Citrus Sinensis ID: 020914

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHccccccccHHHccccHHHHHccHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccEEEEEEccccccHHHHHHHHHHHHHHccHHHHEEEEccccEEEccccEccccccccEccccccEEEEEccHHHHEEEEEccccccccEEccccHHHcccHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAAEAEEmslkdkgneffkAGNYLKAAALYTQAikqdpsnptlfsNRAAAFLHLVKLNKALAdaettislnpqwekgyfrkgCILEAMEQYDDALSAFQTALqynpqsaeVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKsemsekygaeECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLdkektdtekyapivnvdkafesphthgscfQFLRQYAddsfssaaclvapksiisypqvwrgqglrkwrhsqqdgffvqfespllrklwfipssnekgktlcrdpevldisaheVFPRLFKEKLSNS
Flexible Loop (DISEMBL)
maaeaeemslkdkgNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAettislnpqwekgYFRKGCILEAMEQYDDALSAFQTALQynpqsaevsrkIKRVSqlakdkkraqevenirsnvdmvQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKswhetskvdaKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDisahevfprlfkeklsns
Low Complexity Region (SEG)
MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS
Disordered region (IsUnstruct)
****************FFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY*************************************************KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRL********
Disordered Region (DISOPRED)
****A*E**LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR*********************************************HVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISY************************ESPL**********************VLDISAHEVFPR**K******
Disordered Region (DISEMBL)
**********KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY*************************EVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS
Disordered Region (DISPRO)
****AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	320	2.2.26 [Sep-21-2011]
Q43468	569	Heat shock protein STI OS	no	no	0.353	0.198	0.403	3e-18
O54981	543	Stress-induced-phosphopro	yes	no	0.334	0.197	0.416	3e-17
P31948	543	Stress-induced-phosphopro	yes	no	0.328	0.193	0.416	5e-17
Q3ZBZ8	543	Stress-induced-phosphopro	yes	no	0.328	0.193	0.416	5e-17
Q60864	543	Stress-induced-phosphopro	yes	no	0.306	0.180	0.416	6e-17
O35814	543	Stress-induced-phosphopro	yes	no	0.306	0.180	0.416	6e-17
Q4R8N7	543	Stress-induced-phosphopro	N/A	no	0.328	0.193	0.416	6e-17
Q54DA8	564	Protein STIP1 homolog OS=	yes	no	0.434	0.246	0.347	4e-15
Q54IP0	539	DnaJ homolog subfamily C	no	no	0.337	0.200	0.348	1e-14
Q9H6T3	665	RNA polymerase II-associa	no	no	0.334	0.160	0.336	1e-14

>sp|Q43468|STIP_SOYBN Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 72/114 (63%), Gaps = 1/114 (0%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           ++KGNE FK   Y +A   YT+AIK++P +   +SNRAA +  L  + + L DAE  I L
Sbjct: 385 REKGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSNRAACYTKLGAMPEGLKDAEKCIEL 444

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAK 123
           +P + KGY RKG +  +M++YD AL  ++  L+++P + E+   I+R V Q+ K
Sbjct: 445 DPTFSKGYTRKGAVQFSMKEYDKALETYREGLKHDPNNQELLDGIRRCVEQINK 498

Glycine max (taxid: 3847)

>sp|O54981|STIP1_CRIGR Stress-induced-phosphoprotein 1 OS=Cricetulus griseus GN=STIP1 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 65/108 (60%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct: 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
            P + KGY RK   LEAM+ Y  A+  +Q AL+ +    E +   +R 
Sbjct: 424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALELDSSCKEAADGYQRC 471

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Cricetulus griseus (taxid: 10029)

>sp|P31948|STIP1_HUMAN Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 64/108 (59%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct: 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
            P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R 
Sbjct: 424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 471

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Homo sapiens (taxid: 9606)

>sp|Q3ZBZ8|STIP1_BOVIN Stress-induced-phosphoprotein 1 OS=Bos taurus GN=STIP1 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 64/108 (59%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct: 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
            P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R 
Sbjct: 424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSNCKEAADGYQRC 471

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Bos taurus (taxid: 9913)

>sp|Q60864|STIP1_MOUSE Stress-induced-phosphoprotein 1 OS=Mus musculus GN=Stip1 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 64/108 (59%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct: 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
            P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R 
Sbjct: 424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 471

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Mus musculus (taxid: 10090)

>sp|O35814|STIP1_RAT Stress-induced-phosphoprotein 1 OS=Rattus norvegicus GN=Stip1 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 64/108 (59%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct: 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
            P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R 
Sbjct: 424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 471

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Rattus norvegicus (taxid: 10116)

>sp|Q4R8N7|STIP1_MACFA Stress-induced-phosphoprotein 1 OS=Macaca fascicularis GN=STIP1 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 64/108 (59%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct: 364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
            P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R 
Sbjct: 424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSRKEAADGYQRC 471

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Macaca fascicularis (taxid: 9541)

>sp|Q54DA8|STIP1_DICDI Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 25/164 (15%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KG E FK G + +A   + +AI+++P + T++SNR+AA+  L++   A+ DA+  I L
Sbjct: 383 KNKGVEHFKKGEFPEAIKCFEEAIRRNPKDHTIYSNRSAAYSKLLEYKLAIKDADKCIEL 442

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY---NPQSAEVSRKI------------ 115
            P + KGY RKG  L AM +Y  AL  +   L+    NP+  ++SRK             
Sbjct: 443 EPTFIKGYIRKGTALFAMREYQQALEVYDQGLRIEANNPELLDLSRKTVAALTKLQSTLT 502

Query: 116 --KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA 157
             +R+ Q AKD     E++ I S+  M Q L     +MSE   A
Sbjct: 503 DEERLQQAAKDP----EIQKILSDPIMNQIL----KDMSENPAA 538

Dictyostelium discoideum (taxid: 44689)

>sp|Q54IP0|DNJC7_DICDI DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 4/112 (3%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLFSNRAAAFLHLVKLNKALADA 64
           S K +GNE+F++ NY  A   +T+A+  DP     N  L+SNRAAA +HL ++++A+ D 
Sbjct: 237 SKKKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDC 296

Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116
            + ++++P + K Y R+       E Y+DA+  ++ A   +P++ E+ R IK
Sbjct: 297 TSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQRNIK 348

Dictyostelium discoideum (taxid: 44689)

>sp|Q9H6T3|RPAP3_HUMAN RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 68/113 (60%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           + LK+KGN++FK G Y +A   YT+ +  DP NP L +NRA+A+  L K   A +D    
Sbjct: 134 LVLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLA 193

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
           ++LN  + K Y R+G    A+++ ++A   ++  L+  P + E + +++++SQ
Sbjct: 194 VALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQ 246

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
255552073	330	heat shock protein 70 (HSP70)-interactin	0.987	0.957	0.832	1e-159
224099829	334	predicted protein [Populus trichocarpa]	0.981	0.940	0.821	1e-158
449455294	331	PREDICTED: RNA polymerase II-associated	0.971	0.939	0.826	1e-156
224111122	334	predicted protein [Populus trichocarpa]	0.981	0.940	0.808	1e-155
225432762	330	PREDICTED: serine/threonine-protein phos	0.993	0.963	0.792	1e-154
297737096	329	unnamed protein product [Vitis vinifera]	0.993	0.966	0.792	1e-154
356537369	325	PREDICTED: RNA polymerase II-associated	1.0	0.984	0.790	1e-153
449516834	338	PREDICTED: LOW QUALITY PROTEIN: RNA poly	0.971	0.920	0.805	1e-152
359806614	324	uncharacterized protein LOC100790717 [Gl	0.981	0.969	0.802	1e-152
15219673	328	tetratricopeptide repeat-containing prot	0.981	0.957	0.767	1e-146

>gi|255552073|ref|XP_002517081.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223543716|gb|EEF45244.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 263/316 (83%), Positives = 292/316 (92%)

Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
            EE+SLKDKGNEFFKAGNYLKAAALYTQAIK DPSNPTL+SNRAAAFL LVKLNKALADA
Sbjct: 15  GEEVSLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNPTLYSNRAAAFLQLVKLNKALADA 74

Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124
           E TI+LNPQWEKGYFRKGC+LEAME+YDDA +AFQTAL+YNPQS+EVSRKIKR+SQLAK+
Sbjct: 75  EMTITLNPQWEKGYFRKGCVLEAMERYDDASAAFQTALKYNPQSSEVSRKIKRISQLAKE 134

Query: 125 KKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSK 184
           KKRAQEVE++RSNVD+ +H D+ KSEMSEK G+EEC K +FSF+VETME AVKSWHETSK
Sbjct: 135 KKRAQEVESMRSNVDLAKHFDKLKSEMSEKIGSEECLKEIFSFLVETMEMAVKSWHETSK 194

Query: 185 VDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPK 244
           VD +VYFLLDKEKT ++KYAP VN+DKAFESPHTH SCF FLRQYA++SFS AACLVAPK
Sbjct: 195 VDPRVYFLLDKEKTQSDKYAPAVNIDKAFESPHTHSSCFTFLRQYAEESFSKAACLVAPK 254

Query: 245 SIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDIS 304
           SIISYPQVW+GQG RKW+H Q DGFFVQFESP LRKLWFI S+NEKG+TLCRDPE+LDIS
Sbjct: 255 SIISYPQVWKGQGSRKWKHGQHDGFFVQFESPCLRKLWFISSTNEKGQTLCRDPEMLDIS 314

Query: 305 AHEVFPRLFKEKLSNS 320
           AHEVFPRLFKEKL NS
Sbjct: 315 AHEVFPRLFKEKLPNS 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099829|ref|XP_002311636.1| predicted protein [Populus trichocarpa] gi|222851456|gb|EEE89003.1| predicted protein [Populus trichocarpa]

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 258/314 (82%), Positives = 290/314 (92%)

Query: 6   EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
           EE+SLKDKGNEFFKAGNYLKAAALYTQAIK DPSNPTL+SNRAAAFL LVKLNKALADAE
Sbjct: 20  EEISLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNPTLYSNRAAAFLQLVKLNKALADAE 79

Query: 66  TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125
           TTI+LNPQWEKGYFRKGC+LEAMEQYD+AL+ FQ ALQYNP+S EVSRKIKR+SQLAKDK
Sbjct: 80  TTITLNPQWEKGYFRKGCVLEAMEQYDNALATFQIALQYNPRSTEVSRKIKRISQLAKDK 139

Query: 126 KRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV 185
           KRAQEVE++RSNV+M +HL+  KSEMSE  G+EEC+K +FSF+VETMETAVKSWHE SKV
Sbjct: 140 KRAQEVESMRSNVNMEKHLETLKSEMSEMLGSEECFKEMFSFLVETMETAVKSWHEASKV 199

Query: 186 DAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKS 245
           D +VYFLLDKEKT T+KYAP+VN+DKAFESPHTHG+CF FLRQYA+DSFS AAC+V PK+
Sbjct: 200 DPRVYFLLDKEKTLTDKYAPVVNIDKAFESPHTHGNCFSFLRQYAEDSFSKAACVVVPKN 259

Query: 246 IISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISA 305
           IISYPQVW+GQG RKWRH Q DG FVQ+ESPL+RK+WFI SSNEKG+TLCRDPE+LDISA
Sbjct: 260 IISYPQVWKGQGSRKWRHGQHDGIFVQYESPLMRKIWFIASSNEKGQTLCRDPEILDISA 319

Query: 306 HEVFPRLFKEKLSN 319
           HEV PRLFKEK+ N
Sbjct: 320 HEVLPRLFKEKMPN 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455294|ref|XP_004145388.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis sativus]

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 257/311 (82%), Positives = 283/311 (90%)

Query: 7   EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET 66
           E SLKDKGNEFFKAGNYLKAAALYTQAIK DPSN  L+SNRAAAFLHLVKLNKALADAE 
Sbjct: 18  EPSLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNHALYSNRAAAFLHLVKLNKALADAEM 77

Query: 67  TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126
           TI L+PQWEKGYFRKGCILEAME+YDDALSAFQTALQYNPQSAEVSRKIKRVSQL KDKK
Sbjct: 78  TIKLSPQWEKGYFRKGCILEAMEKYDDALSAFQTALQYNPQSAEVSRKIKRVSQLVKDKK 137

Query: 127 RAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD 186
           RAQEVE  RSN+DM +HLD+ KSE+SEKYG+EECWK +FSF+VETME AV+SWHETS VD
Sbjct: 138 RAQEVEKKRSNIDMTKHLDKLKSELSEKYGSEECWKDIFSFLVETMEAAVRSWHETSNVD 197

Query: 187 AKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSI 246
           AKVY+LLD EKTDTEKYAP+VN+DKAFESPHTH  CFQFLR+YA+DS S AACLV PKS+
Sbjct: 198 AKVYYLLDNEKTDTEKYAPVVNIDKAFESPHTHSDCFQFLRKYAEDSVSRAACLVTPKSL 257

Query: 247 ISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAH 306
           ISYPQVW+GQG RKW+H Q DGFFVQ E+P LRKLWF+PSS+E G+ LCRDPEVLDI+AH
Sbjct: 258 ISYPQVWKGQGSRKWKHGQHDGFFVQLETPSLRKLWFVPSSSELGRPLCRDPEVLDIAAH 317

Query: 307 EVFPRLFKEKL 317
           E+ PR+FKEKL
Sbjct: 318 ELLPRIFKEKL 328

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111122|ref|XP_002315755.1| predicted protein [Populus trichocarpa] gi|222864795|gb|EEF01926.1| predicted protein [Populus trichocarpa]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 254/314 (80%), Positives = 287/314 (91%)

Query: 6   EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
           EE+SLKDKGNEFFKAGNYLKAAALYTQAIK DPSNPTL+SNRAAAFL LVKLNKALADAE
Sbjct: 20  EEISLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNPTLYSNRAAAFLQLVKLNKALADAE 79

Query: 66  TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125
           TTI LNPQWEKGYFRKGC+LE ME+YDDAL+ FQ ALQ+NPQS EVSRKIKR+SQLA+DK
Sbjct: 80  TTIKLNPQWEKGYFRKGCVLEGMERYDDALATFQIALQHNPQSTEVSRKIKRISQLARDK 139

Query: 126 KRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV 185
           KRAQEV+++RSNVDM +HL+  KSEM EK G+EEC+K +FSF+VETMETAVKSWHE SKV
Sbjct: 140 KRAQEVQSMRSNVDMAKHLETLKSEMFEKLGSEECFKDMFSFLVETMETAVKSWHEASKV 199

Query: 186 DAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKS 245
           D +VYFLLDKEKT T+KYAP+VN+DKAFESPH+H +CF FLRQYADDSFS AACLV PK+
Sbjct: 200 DPRVYFLLDKEKTQTDKYAPVVNIDKAFESPHSHSNCFSFLRQYADDSFSKAACLVVPKN 259

Query: 246 IISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISA 305
           IISYPQVW+GQG RKW++ Q DGFFVQ+ES L+RK+WFI S+NEKG+TLCRDPEVLDI A
Sbjct: 260 IISYPQVWKGQGSRKWKYGQHDGFFVQYESHLMRKIWFIASTNEKGQTLCRDPEVLDIGA 319

Query: 306 HEVFPRLFKEKLSN 319
           HEV PRLFKEKL+N
Sbjct: 320 HEVLPRLFKEKLTN 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432762|ref|XP_002283155.1| PREDICTED: serine/threonine-protein phosphatase 5-like [Vitis vinifera]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 252/318 (79%), Positives = 289/318 (90%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           A+E+E++SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL+SNRAAAFLHLVKL KAL
Sbjct: 12  ASESEQVSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLTKAL 71

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121
           ADAETTI+LNP WEKGYFRKGC+LEAME+YDD+L AF+ AL++NPQS+EVSRKIK+++QL
Sbjct: 72  ADAETTITLNPNWEKGYFRKGCVLEAMERYDDSLVAFRIALEHNPQSSEVSRKIKKLTQL 131

Query: 122 AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE 181
           A+DKKR QEVEN RSNVDM +HL+  KSE+SEKYG  E WK +FSF VET+ETA+KSWHE
Sbjct: 132 ARDKKRVQEVENKRSNVDMAKHLETLKSELSEKYGDAEHWKSMFSFTVETIETAIKSWHE 191

Query: 182 TSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLV 241
           TSKVDA+VYFLLDKEKT T+KYAP+VN+DKAFESPHTH SCF FLR YA++SFS AACLV
Sbjct: 192 TSKVDARVYFLLDKEKTQTDKYAPVVNIDKAFESPHTHKSCFTFLRDYAEESFSKAACLV 251

Query: 242 APKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVL 301
           APKSIISYPQVW+GQG RKW+H Q DGFFVQFESP L+KLWF+PSS EKG+ LCRDPEVL
Sbjct: 252 APKSIISYPQVWKGQGSRKWKHGQSDGFFVQFESPSLQKLWFVPSSTEKGQLLCRDPEVL 311

Query: 302 DISAHEVFPRLFKEKLSN 319
           DI  HE+ PR+FK+KL N
Sbjct: 312 DIGVHELLPRIFKQKLPN 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737096|emb|CBI26297.3| unnamed protein product [Vitis vinifera]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 252/318 (79%), Positives = 289/318 (90%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           A+E+E++SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL+SNRAAAFLHLVKL KAL
Sbjct: 11  ASESEQVSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLYSNRAAAFLHLVKLTKAL 70

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121
           ADAETTI+LNP WEKGYFRKGC+LEAME+YDD+L AF+ AL++NPQS+EVSRKIK+++QL
Sbjct: 71  ADAETTITLNPNWEKGYFRKGCVLEAMERYDDSLVAFRIALEHNPQSSEVSRKIKKLTQL 130

Query: 122 AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE 181
           A+DKKR QEVEN RSNVDM +HL+  KSE+SEKYG  E WK +FSF VET+ETA+KSWHE
Sbjct: 131 ARDKKRVQEVENKRSNVDMAKHLETLKSELSEKYGDAEHWKSMFSFTVETIETAIKSWHE 190

Query: 182 TSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLV 241
           TSKVDA+VYFLLDKEKT T+KYAP+VN+DKAFESPHTH SCF FLR YA++SFS AACLV
Sbjct: 191 TSKVDARVYFLLDKEKTQTDKYAPVVNIDKAFESPHTHKSCFTFLRDYAEESFSKAACLV 250

Query: 242 APKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVL 301
           APKSIISYPQVW+GQG RKW+H Q DGFFVQFESP L+KLWF+PSS EKG+ LCRDPEVL
Sbjct: 251 APKSIISYPQVWKGQGSRKWKHGQSDGFFVQFESPSLQKLWFVPSSTEKGQLLCRDPEVL 310

Query: 302 DISAHEVFPRLFKEKLSN 319
           DI  HE+ PR+FK+KL N
Sbjct: 311 DIGVHELLPRIFKQKLPN 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537369|ref|XP_003537200.1| PREDICTED: RNA polymerase II-associated protein 3-like [Glycine max]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 257/325 (79%), Positives = 288/325 (88%), Gaps = 5/325 (1%)

Query: 1   MAAEAEE-----MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV 55
           MAAE +E     MSLKD+GNEFFK+G YLKAAALYTQAIKQDPSNPTL+SNRAAA L L 
Sbjct: 1   MAAETKEVSGSEMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLD 60

Query: 56  KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115
           KLNKAL DAE TI L PQWEKGYFRKG ILEAM++YDDAL+AFQ ALQYNPQS EV++KI
Sbjct: 61  KLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNPQSQEVTKKI 120

Query: 116 KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETA 175
           K+++QL KD KRAQEVEN+RSNVDM +HLD FK+EMS KYG EE WK +FSF+VETMETA
Sbjct: 121 KKINQLMKDSKRAQEVENMRSNVDMAKHLDTFKTEMSGKYGLEEGWKDLFSFLVETMETA 180

Query: 176 VKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFS 235
           VKSWHETS VDA+VYFLLDKEKTDT+KYAP+VN+DKAFESPHTHG+CF FLRQYA++SFS
Sbjct: 181 VKSWHETSSVDARVYFLLDKEKTDTDKYAPVVNIDKAFESPHTHGNCFAFLRQYAEESFS 240

Query: 236 SAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLC 295
            AACLV PK+II+YPQVW+GQG RKW+H+Q DGFFVQFESP LRKLWFIPSSNEKG+TLC
Sbjct: 241 KAACLVTPKNIIAYPQVWKGQGPRKWKHAQSDGFFVQFESPSLRKLWFIPSSNEKGQTLC 300

Query: 296 RDPEVLDISAHEVFPRLFKEKLSNS 320
           RDPEVLDI AHEV PRL KE L +S
Sbjct: 301 RDPEVLDIGAHEVLPRLLKENLPHS 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516834|ref|XP_004165451.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II-associated protein 3-like [Cucumis sativus]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/318 (80%), Positives = 282/318 (88%), Gaps = 7/318 (2%)

Query: 7   EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET 66
           E SLKDKGNEFFKAGNYLKAAALYTQAIK DPSN  L+SNRAAAFLHLVKLNKALADAE 
Sbjct: 18  EPSLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNHALYSNRAAAFLHLVKLNKALADAEM 77

Query: 67  TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126
           TI L+PQWEKGYFRKGCILEAME+YDDALSAFQTALQYNPQSAEVSRKIKRVSQL KDKK
Sbjct: 78  TIKLSPQWEKGYFRKGCILEAMEKYDDALSAFQTALQYNPQSAEVSRKIKRVSQLVKDKK 137

Query: 127 RAQEVENIRSNVDMVQHLDEFKSEMSE-------KYGAEECWKHVFSFVVETMETAVKSW 179
           RAQEVE  RSN+DM +HLD+ KSE+S        KYG+EECWK +FSF+VETME AV+S 
Sbjct: 138 RAQEVEKKRSNIDMTKHLDKLKSELSHSLSIAVXKYGSEECWKDIFSFLVETMEAAVRSX 197

Query: 180 HETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAAC 239
           HETS VDAKVY+LLDKEKTDTEKYAP+VN+DKAFESPHTH  CFQFLR+YA+DS S AAC
Sbjct: 198 HETSNVDAKVYYLLDKEKTDTEKYAPVVNIDKAFESPHTHSDCFQFLRKYAEDSVSRAAC 257

Query: 240 LVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPE 299
           LV PKS+ISYPQVW+GQG RKW+H Q DGFFVQ E+P LRKLWF+PSS+E G+ LCRDPE
Sbjct: 258 LVTPKSLISYPQVWKGQGSRKWKHGQHDGFFVQLETPSLRKLWFVPSSSELGRPLCRDPE 317

Query: 300 VLDISAHEVFPRLFKEKL 317
           VLDI+AHE+ PR+FKEKL
Sbjct: 318 VLDIAAHELLPRIFKEKL 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806614|ref|NP_001241273.1| uncharacterized protein LOC100790717 [Glycine max] gi|255644906|gb|ACU22953.1| unknown [Glycine max]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 252/314 (80%), Positives = 281/314 (89%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
               EMSLKD+GNEFFK+G YLKAAALYTQAIK DPSNPTL+SNRAAA L L KLNKAL 
Sbjct: 7   GSGSEMSLKDQGNEFFKSGKYLKAAALYTQAIKLDPSNPTLYSNRAAALLQLDKLNKALD 66

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122
           DAE TI L PQWEKGYFRKG ILEAM++YDDAL++FQ ALQYNPQS EVS+KIK+++QL 
Sbjct: 67  DAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALASFQIALQYNPQSQEVSKKIKKINQLV 126

Query: 123 KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHET 182
           KD KRAQEVEN+RSNVDM +HLD FK+EMS KYG+EEC K +FSF+VETMETAVKSWHET
Sbjct: 127 KDSKRAQEVENMRSNVDMAKHLDTFKTEMSGKYGSEECLKDLFSFLVETMETAVKSWHET 186

Query: 183 SKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVA 242
           S VDAKVYFLLDKEKTDT+KYAP+VN+DKAFESPHTHG+CF FLRQYA++SFS AACLV 
Sbjct: 187 SSVDAKVYFLLDKEKTDTDKYAPVVNIDKAFESPHTHGNCFAFLRQYAEESFSKAACLVT 246

Query: 243 PKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLD 302
           PK+II+YPQVW+GQG RKW+H+Q DGFFVQFESP LRKLWFIPSSNEKG+T CRDPEVLD
Sbjct: 247 PKNIIAYPQVWKGQGSRKWKHAQSDGFFVQFESPSLRKLWFIPSSNEKGQTWCRDPEVLD 306

Query: 303 ISAHEVFPRLFKEK 316
           I AHEV PRLFKEK
Sbjct: 307 IGAHEVLPRLFKEK 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219673|ref|NP_171915.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|19423984|gb|AAL87273.1| unknown protein [Arabidopsis thaliana] gi|21281239|gb|AAM45091.1| unknown protein [Arabidopsis thaliana] gi|332189547|gb|AEE27668.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 241/314 (76%), Positives = 276/314 (87%)

Query: 7   EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET 66
           E SLK+KGNEFFKAGN+LKAAALYTQAIK DPSN TL+SNRAAAFL LVKL+KALADAET
Sbjct: 15  EKSLKEKGNEFFKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAFLSLVKLSKALADAET 74

Query: 67  TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126
           TI LNPQWEKGYFRKGC+LEAME+Y+DAL+AF+ ALQYNPQS EVSRKIKR+ QL K+K+
Sbjct: 75  TIKLNPQWEKGYFRKGCVLEAMEKYEDALAAFEMALQYNPQSTEVSRKIKRLGQLQKEKQ 134

Query: 127 RAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD 186
           RAQE+EN+RSNVDM +HL+ FKSEMSE YG EECWK +FSF+VETMETAVKSWHETSKVD
Sbjct: 135 RAQELENLRSNVDMAKHLESFKSEMSENYGTEECWKEMFSFIVETMETAVKSWHETSKVD 194

Query: 187 AKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSI 246
            +VYFLLDKEKT T+KYAP VN+DKAF+SP TH +CF +LRQYA++SFS AACLV PKS 
Sbjct: 195 TRVYFLLDKEKTQTDKYAPAVNIDKAFQSPDTHSNCFTYLRQYAEESFSKAACLVTPKSS 254

Query: 247 ISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAH 306
           ISYPQVW+G G RKW+    DG FVQFESP LRK+WFI SS EKG+TLCR+P+ LDI AH
Sbjct: 255 ISYPQVWKGVGSRKWKLGPNDGIFVQFESPSLRKVWFISSSKEKGQTLCREPQALDIGAH 314

Query: 307 EVFPRLFKEKLSNS 320
           E+ PR+FKEK  +S
Sbjct: 315 EILPRIFKEKSKSS 328

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
TAIR|locus:2020240	328	TPR3 "tetratricopeptide repeat	0.987	0.963	0.766	3.3e-134
FB|FBgn0024352	490	Hop "Hsp70/Hsp90 organizing pr	0.434	0.283	0.395	3e-20
WB|WBGene00019983	320	sti-1 [Caenorhabditis elegans	0.375	0.375	0.388	2.6e-19
TAIR|locus:2026197	571	Hop2 "Hop2" [Arabidopsis thali	0.353	0.197	0.412	5.4e-19
ZFIN|ZDB-GENE-041121-17	542	stip1 "stress-induced-phosphop	0.437	0.258	0.370	5.5e-17
UNIPROTKB|Q43468	569	STI "Heat shock protein STI" [	0.353	0.198	0.403	8.5e-17
TAIR|locus:2034620	572	Hop1 "Hop1" [Arabidopsis thali	0.353	0.197	0.385	1.3e-16
TAIR|locus:2139109	558	Hop3 "AT4G12400" [Arabidopsis	0.459	0.263	0.346	2.2e-16
UNIPROTKB|Q3ZBZ8	543	STIP1 "Stress-induced-phosphop	0.437	0.257	0.364	1.9e-15
UNIPROTKB|P31948	543	STIP1 "Stress-induced-phosphop	0.403	0.237	0.372	1.9e-15

TAIR|locus:2020240 TPR3 "tetratricopeptide repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
 Identities = 243/317 (76%), Positives = 279/317 (88%)

Query:     4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
             EAE+ SLK+KGNEFFKAGN+LKAAALYTQAIK DPSN TL+SNRAAAFL LVKL+KALAD
Sbjct:    13 EAEK-SLKEKGNEFFKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAFLSLVKLSKALAD 71

Query:    64 AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123
             AETTI LNPQWEKGYFRKGC+LEAME+Y+DAL+AF+ ALQYNPQS EVSRKIKR+ QL K
Sbjct:    72 AETTIKLNPQWEKGYFRKGCVLEAMEKYEDALAAFEMALQYNPQSTEVSRKIKRLGQLQK 131

Query:   124 DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS 183
             +K+RAQE+EN+RSNVDM +HL+ FKSEMSE YG EECWK +FSF+VETMETAVKSWHETS
Sbjct:   132 EKQRAQELENLRSNVDMAKHLESFKSEMSENYGTEECWKEMFSFIVETMETAVKSWHETS 191

Query:   184 KVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAP 243
             KVD +VYFLLDKEKT T+KYAP VN+DKAF+SP TH +CF +LRQYA++SFS AACLV P
Sbjct:   192 KVDTRVYFLLDKEKTQTDKYAPAVNIDKAFQSPDTHSNCFTYLRQYAEESFSKAACLVTP 251

Query:   244 KSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDI 303
             KS ISYPQVW+G G RKW+    DG FVQFESP LRK+WFI SS EKG+TLCR+P+ LDI
Sbjct:   252 KSSISYPQVWKGVGSRKWKLGPNDGIFVQFESPSLRKVWFISSSKEKGQTLCREPQALDI 311

Query:   304 SAHEVFPRLFKEKLSNS 320
              AHE+ PR+FKEK  +S
Sbjct:   312 GAHEILPRIFKEKSKSS 328

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

FB|FBgn0024352 Hop "Hsp70/Hsp90 organizing protein homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 3.0e-20, P = 3.0e-20
 Identities = 57/144 (39%), Positives = 88/144 (61%)

Query:     4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
             +AEE   K++GN FFK G+Y  A   YT+AIK++P +P L+SNRAA +  L   +  L D
Sbjct:   309 KAEEE--KEQGNLFFKKGDYSTAVKHYTEAIKRNPDDPKLYSNRAACYTKLAAFDLGLKD 366

Query:    64 AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123
              +T I L+ ++ KGY RKG IL+ M+Q   A +A+Q AL+ +P +AE     ++ S    
Sbjct:   367 CDTCIKLDEKFIKGYIRKGKILQGMQQQSKAQAAYQKALELDPNNAEAIEGYRQCSM--N 424

Query:   124 DKKRAQEV-ENIRSNVDMVQHLDE 146
              ++  QEV +N  S+ ++ Q L +
Sbjct:   425 FQRNPQEVLKNAMSDPEIQQILKD 448

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

WB|WBGene00019983 sti-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 231 (86.4 bits), Expect = 2.6e-19, P = 2.6e-19
 Identities = 47/121 (38%), Positives = 74/121 (61%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             K+KGNE+FK G+Y  A   Y +A+K+DP N  L+SNRAA    L++  +AL D +T I L
Sbjct:   144 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 203

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAKDKKRAQ 129
             + ++ KGY RK   L AM ++  A  A++ ALQ +P + E    ++  +    +D ++A+
Sbjct:   204 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLRSNDEDPEKAK 263

Query:   130 E 130
             E
Sbjct:   264 E 264

GO:0000003 "reproduction" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IPI

GO:0051879 "Hsp90 protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0032780 "negative regulation of ATPase activity" evidence=IDA

TAIR|locus:2026197 Hop2 "Hop2" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 5.4e-19, P = 5.4e-19
 Identities = 47/114 (41%), Positives = 73/114 (64%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             ++KGN+FFK   Y  A   YT+AIK++P +P  +SNRAA +  L  + + L DAE  I L
Sbjct:   386 REKGNDFFKEQKYPDAVRHYTEAIKRNPKDPRAYSNRAACYTKLGAMPEGLKDAEKCIEL 445

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAK 123
             +P + KGY RKG +   M++YD+A+  +Q  L+++P + E+   +KR V Q+ K
Sbjct:   446 DPTFLKGYSRKGAVQFFMKEYDNAMETYQKGLEHDPNNQELLDGVKRCVQQINK 499

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

ZFIN|ZDB-GENE-041121-17 stip1 "stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein)" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 5.5e-17, P = 5.5e-17
 Identities = 56/151 (37%), Positives = 89/151 (58%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             K+KGN+ F+ G+Y  A   Y++AIK++P +  LFSNRAA +  L++   AL D E  I+L
Sbjct:   363 KNKGNDAFQKGDYPLAMKHYSEAIKRNPYDAKLFSNRAACYTKLLEFQLALKDCEECINL 422

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR--VSQLAKD---- 124
             +  + KGY RKG  LEAM+ +  A+  +Q AL+ +  S E +  ++R  VSQ  ++    
Sbjct:   423 DSTFIKGYTRKGAALEAMKDFSKAMDVYQKALELDSNSKEATEGLQRCMVSQAMRNDSPE 482

Query:   125 --KKRAQ---EVENIRSNVDMVQHLDEFKSE 150
               K+RA    EV+ I S+  M   L++ + +
Sbjct:   483 DVKRRAMADPEVQQIMSDPAMRMILEQMQKD 513

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q43468 STI "Heat shock protein STI" [Glycine max (taxid:3847)]

 Score = 226 (84.6 bits), Expect = 8.5e-17, P = 8.5e-17
 Identities = 46/114 (40%), Positives = 72/114 (63%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             ++KGNE FK   Y +A   YT+AIK++P +   +SNRAA +  L  + + L DAE  I L
Sbjct:   385 REKGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSNRAACYTKLGAMPEGLKDAEKCIEL 444

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAK 123
             +P + KGY RKG +  +M++YD AL  ++  L+++P + E+   I+R V Q+ K
Sbjct:   445 DPTFSKGYTRKGAVQFSMKEYDKALETYREGLKHDPNNQELLDGIRRCVEQINK 498

GO:0005575 "cellular_component" evidence=ND

GO:0006986 "response to unfolded protein" evidence=IDA

GO:0009408 "response to heat" evidence=IDA

TAIR|locus:2034620 Hop1 "Hop1" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 44/114 (38%), Positives = 74/114 (64%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             ++KGN+FFK   Y +A   YT+AIK++P++   +SNRAA++  L  + + L DAE  I L
Sbjct:   387 REKGNDFFKEQKYPEAIKHYTEAIKRNPNDHKAYSNRAASYTKLGAMPEGLKDAEKCIEL 446

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAK 123
             +P + KGY RK  +   +++YD+A+  +Q  L+++P + E+   +KR V Q+ K
Sbjct:   447 DPTFSKGYSRKAAVQFFLKEYDNAMETYQAGLEHDPSNQELLDGVKRCVQQINK 500

GO:0005737 "cytoplasm" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

TAIR|locus:2139109 Hop3 "AT4G12400" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 2.2e-16, P = 2.2e-16
 Identities = 52/150 (34%), Positives = 85/150 (56%)

Query:     5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
             AEE   ++KGN FFK   Y +A   Y++AIK++P++   +SNRAA +  L  L + L DA
Sbjct:   369 AEEE--REKGNGFFKEQKYPEAVKHYSEAIKRNPNDVRAYSNRAACYTKLGALPEGLKDA 426

Query:    65 ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAK 123
             E  I L+P + KGY RKG I   M++YD A+  +Q  L+++P++ E    ++R V Q+ K
Sbjct:   427 EKCIELDPSFTKGYSRKGAIQFFMKEYDKAMETYQEGLKHDPKNQEFLDGVRRCVEQINK 486

Query:   124 DKKRAQEVENIRSNVDMVQHLDEFKSEMSE 153
               +     E ++          E ++ +S+
Sbjct:   487 ASRGDLTPEELKERQAKAMQDPEVQNILSD 516

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

UNIPROTKB|Q3ZBZ8 STIP1 "Stress-induced-phosphoprotein 1" [Bos taurus (taxid:9913)]

 Score = 216 (81.1 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 55/151 (36%), Positives = 84/151 (55%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct:   364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR--VSQLAKD---- 124
              P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R  ++Q  +     
Sbjct:   424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSNCKEAADGYQRCVMAQYNRHDSPE 483

Query:   125 --KKRAQ---EVENIRSNVDMVQHLDEFKSE 150
               K+RA    EV+ I S+  M   L++ + +
Sbjct:   484 DVKRRAMADPEVQQIMSDPAMRLILEQMQKD 514

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P31948 STIP1 "Stress-induced-phosphoprotein 1" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 48/129 (37%), Positives = 71/129 (55%)

Query:    11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
             K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  I L
Sbjct:   364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423

Query:    71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130
              P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R      ++  + E
Sbjct:   424 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHDSPE 483

Query:   131 VENIRSNVD 139
                 R+  D
Sbjct:   484 DVKRRAMAD 492

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0005634 "nucleus" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=TAS

GO:0006950 "response to stress" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VIII0670 hypothetical protein (334 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	320
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-22
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	8e-16
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-13
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-09
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	4e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	7e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-04
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	2e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	3e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	7e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.003
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.003
TIGR03302	235	TIGR03302, OM_YfiO, outer membrane assembly lipopr	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 89.7 bits (223), Expect = 1e-22
 Identities = 34/98 (34%), Positives = 56/98 (57%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           L + GN ++K G+Y +A   Y +A++ DP N   + N AAA+  L K  +AL D E  + 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
           L+P   K Y+  G     + +Y++AL A++ AL+ +P 
Sbjct: 63  LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 76.7 bits (189), Expect = 8e-16
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKA 60
           MA + E     DK  E F   ++  A  LYTQAI  DP+N  L+++RA A + L    +A
Sbjct: 1   MAKDLE-----DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEA 55

Query: 61  LADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
           +ADA   I L+P   K Y RKG     +E+Y  A +A +      P  +  ++ IK   +
Sbjct: 56  VADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115

Query: 121 LAKD 124
              +
Sbjct: 116 KIAE 119

Length = 356

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 62.7 bits (153), Expect = 6e-13
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL-VKLNKALADAETTI 68
          LK+ GN  FK G+Y +A   Y +A++ DP N   + N A A+L L     +AL D E  +
Sbjct: 6  LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65

Query: 69 SLNP 72
           L+P
Sbjct: 66 ELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 8/149 (5%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
             LK+KGN+ ++  ++ KA  LY++AI+  P +P  +SNRAA    L    K + D    
Sbjct: 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAA 186

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY-----NPQSAE-VSRKIKRVSQL 121
           + L+P + K   R+    + + +Y DAL    TA        N QSA+ V R +K+ ++ 
Sbjct: 187 LELDPDYSKALNRRANAYDGLGKYADALLDL-TASCIIDGFRNEQSAQAVERLLKKFAES 245

Query: 122 AKDKKRAQEVENIRSNVDMVQHLDEFKSE 150
              +    + EN+ S   +  +L  F+ +
Sbjct: 246 KAKEILETKPENLPSVTFVGNYLQSFRPK 274

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 23/94 (24%), Positives = 38/94 (40%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           KG+     GN   A A Y +AI   P+N  +    A   +   +  +A   A+  +   P
Sbjct: 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP 258

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
                ++ K  +    + Y+DA    Q AL+  P
Sbjct: 259 NSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 25/113 (22%), Positives = 42/113 (37%)

Query: 19  KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY 78
           + GN  +A A   +A + +P         A  +L   +L KALA         P   + +
Sbjct: 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW 604

Query: 79  FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131
              G    A    + A+S+F+  L   P SA     +     + K+  +A   
Sbjct: 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 13/62 (20%), Positives = 23/62 (37%)

Query: 12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
                 +AG+Y +A A    A+ + P           A L   +L +A A     ++ +
Sbjct: 2  ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Query: 72 PQ 73
          P 
Sbjct: 62 PD 63

Length = 65

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTI 68
           L   G      G Y +A  L  +A+K +P +      N    +L L K  +AL   E  +
Sbjct: 170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKAL 229

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
            L+P   +  +    +L  + +Y++AL A + AL+ +P
Sbjct: 230 ELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267

Length = 291

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 76  KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
           K  +  G     + +YD+AL  ++ AL+ NP 
Sbjct: 2   KALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80
             + KA  LY + +++DP+NP      A       K  +AL   +  ++  P     Y  
Sbjct: 100 KQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTDAARYEA 159

Query: 81  KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM 140
              +L A E + DAL A+Q AL   P + E + ++ R+         A            
Sbjct: 160 LAYVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRILTRLGAPPAAAR--------LA 211

Query: 141 VQHLDEFKSE 150
            Q+ D F  E
Sbjct: 212 KQYPDLFTPE 221

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 76  KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
           +  +  G     +  YD+AL  ++ AL+ +P 
Sbjct: 2   EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 76  KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
           +  +  G     +  Y++AL A++ AL+ +P 
Sbjct: 2   EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 4/107 (3%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAET 66
            +L + G      G Y +A  L  +A+  DP            A   L    +AL   E 
Sbjct: 96  EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK 155

Query: 67  TISLNP---QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            + L+P   +  +     G +LEA+ +Y++AL   + AL+ NP    
Sbjct: 156 ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDA 202

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
           + +  +L + G  + K G Y +A   Y +A++ DP N     N A   L L +  +AL  
Sbjct: 199 DDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEA 258

Query: 64  AETTISLNPQW-EKGYFRKGCILEAMEQYDDAL 95
            E  + L+P     G      + EA+E  + A 
Sbjct: 259 LEKALELDPDLYNLGLALLLLLAEALELLEKAD 291

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 78  YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
               G  L  +  YD+A+ A++ AL+ +P +AE 
Sbjct: 6   LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEA 39

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 25  KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA--DAETTISLNPQWEKGYFRKG 82
           KA   + +A+K +  +P ++ +RA   LH +K   A A  D + +I L+P +   + + G
Sbjct: 383 KAEEDFDKALKLNSEDPDIYYHRAQ--LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440

Query: 83  CILEAMEQYDDALSAFQTALQYNPQSAEV 111
                      +++ F+   +  P++ +V
Sbjct: 441 VTQYKEGSIASSMATFRRCKKNFPEAPDV 469

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234164 TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 22/115 (19%)

Query: 12  DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRA---AAFLH--LVKLNKALADAET 66
           ++  E   +G+Y +A   +     + P +P  ++ +A    A+ +       +A+A A+ 
Sbjct: 38  EEAKEALDSGDYTEAIKYFEALESRYPFSP--YAEQAQLDLAYAYYKSGDYAEAIAAADR 95

Query: 67  TISLNPQWEK---GYFRKGCILEAMEQYDD----------ALSAFQTALQYNPQS 108
            I L+P        Y+ +G  L    Q D           A  AFQ  ++  P S
Sbjct: 96  FIRLHPNHPDADYAYYLRG--LSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795) [Protein fate, Protein and peptide secretion and trafficking]. Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.97
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.91
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.9
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.9
KOG1126	638	consensus DNA-binding cell division cycle control	99.9
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.89
KOG1126	638	consensus DNA-binding cell division cycle control	99.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.88
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.87
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.87
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.87
PRK11189	296	lipoprotein NlpI; Provisional	99.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.85
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.83
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.83
KOG0553	304	consensus TPR repeat-containing protein [General f	99.82
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.82
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.82
KOG2076	895	consensus RNA polymerase III transcription factor	99.82
PRK15359	144	type III secretion system chaperone protein SscB;	99.82
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.82
KOG1125	579	consensus TPR repeat-containing protein [General f	99.81
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.81
PRK11189	296	lipoprotein NlpI; Provisional	99.81
PRK12370	553	invasion protein regulator; Provisional	99.81
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.81
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.79
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.78
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.78
PRK12370	553	invasion protein regulator; Provisional	99.78
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.76
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.75
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.74
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.74
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.73
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.73
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.73
PLN02789	320	farnesyltranstransferase	99.72
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.71
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.71
KOG1125	579	consensus TPR repeat-containing protein [General f	99.7
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.7
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.69
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.69
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.69
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.68
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.67
PRK15359	144	type III secretion system chaperone protein SscB;	99.66
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.66
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.66
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.65
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.64
KOG1129	478	consensus TPR repeat-containing protein [General f	99.64
PLN02789	320	farnesyltranstransferase	99.63
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.63
KOG2003	840	consensus TPR repeat-containing protein [General f	99.62
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.62
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.61
KOG2003	840	consensus TPR repeat-containing protein [General f	99.61
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.6
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.58
PRK14574	822	hmsH outer membrane protein; Provisional	99.58
KOG2076	895	consensus RNA polymerase III transcription factor	99.57
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.57
KOG1129	478	consensus TPR repeat-containing protein [General f	99.56
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.56
PRK14574	822	hmsH outer membrane protein; Provisional	99.56
KOG4234	271	consensus TPR repeat-containing protein [General f	99.55
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.55
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.54
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.54
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.54
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.53
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.52
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.52
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.52
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.51
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.51
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.51
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.5
PRK15331	165	chaperone protein SicA; Provisional	99.49
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.49
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.49
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.48
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.47
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.47
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.47
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.46
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.45
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.45
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.44
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.44
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.43
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.43
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.41
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.4
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.39
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.38
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.37
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.37
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.36
PRK10803	263	tol-pal system protein YbgF; Provisional	99.36
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.36
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.36
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.36
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.35
KOG0553	304	consensus TPR repeat-containing protein [General f	99.34
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.34
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.33
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.32
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.31
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.28
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.27
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.24
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.22
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.21
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.2
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.2
KOG4555	175	consensus TPR repeat-containing protein [Function	99.2
PF12688	120	TPR_5: Tetratrico peptide repeat	99.2
PF13512	142	TPR_18: Tetratricopeptide repeat	99.19
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.19
PLN03218	1060	maturation of RBCL 1; Provisional	99.18
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.17
PF13371	73	TPR_9: Tetratricopeptide repeat	99.16
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.16
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.15
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.15
PLN03218	1060	maturation of RBCL 1; Provisional	99.15
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.14
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.14
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.14
PF13371	73	TPR_9: Tetratricopeptide repeat	99.14
PRK11906	458	transcriptional regulator; Provisional	99.13
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.13
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.12
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.11
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.1
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.09
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.09
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.07
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.07
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.06
PF12688	120	TPR_5: Tetratrico peptide repeat	99.05
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.05
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.05
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.04
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.04
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.04
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.03
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.03
PRK11906	458	transcriptional regulator; Provisional	99.01
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.97
PRK15331	165	chaperone protein SicA; Provisional	98.96
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.95
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.93
PRK04841	903	transcriptional regulator MalT; Provisional	98.92
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.91
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.9
PLN03077	857	Protein ECB2; Provisional	98.89
PRK10803	263	tol-pal system protein YbgF; Provisional	98.89
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.89
PLN03077	857	Protein ECB2; Provisional	98.87
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.86
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.84
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.82
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.8
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.77
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.76
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.73
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.72
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.71
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.69
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.69
PF13428	44	TPR_14: Tetratricopeptide repeat	98.61
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.61
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.61
PRK04841	903	transcriptional regulator MalT; Provisional	98.6
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.6
PF13428	44	TPR_14: Tetratricopeptide repeat	98.59
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.57
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.56
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.55
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.55
KOG4555	175	consensus TPR repeat-containing protein [Function	98.55
PF13431	34	TPR_17: Tetratricopeptide repeat	98.54
PF13431	34	TPR_17: Tetratricopeptide repeat	98.51
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.46
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.46
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.45
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.45
KOG4234	271	consensus TPR repeat-containing protein [General f	98.44
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.43
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.38
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.37
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.36
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.31
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.31
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.3
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.3
PF13512	142	TPR_18: Tetratricopeptide repeat	98.28
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.25
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.24
KOG1586	288	consensus Protein required for fusion of vesicles	98.24
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.22
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.19
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.17
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.17
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.17
KOG1585	308	consensus Protein required for fusion of vesicles	98.14
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.09
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.02
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.02
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.98
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.97
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.96
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.91
KOG2471	696	consensus TPR repeat-containing protein [General f	97.91
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.86
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.86
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.79
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.79
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.78
KOG1310	758	consensus WD40 repeat protein [General function pr	97.78
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.77
PRK10941	269	hypothetical protein; Provisional	97.74
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.72
KOG1586	288	consensus Protein required for fusion of vesicles	97.69
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.69
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.69
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.67
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.64
KOG1585	308	consensus Protein required for fusion of vesicles	97.63
PRK10941	269	hypothetical protein; Provisional	97.62
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.61
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.61
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.6
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.6
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.6
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.58
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.57
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.55
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.54
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.51
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.49
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.46
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.42
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.41
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.39
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.38
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.36
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.35
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.31
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.31
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.22
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.21
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.19
KOG2471	696	consensus TPR repeat-containing protein [General f	97.08
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	97.07
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.05
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.01
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.97
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.97
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.9
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.87
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	96.86
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.83
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.82
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.78
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.77
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.75
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.7
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.64
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.63
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.63
KOG2449	157	consensus Methylmalonate semialdehyde dehydrogenas	96.61
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.58
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.57
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.51
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.5
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.5
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.5
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.48
KOG3364	149	consensus Membrane protein involved in organellar	96.45
COG2912	269	Uncharacterized conserved protein [Function unknow	96.45
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.45
KOG1258	577	consensus mRNA processing protein [RNA processing	96.42
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.42
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	96.34
COG2912	269	Uncharacterized conserved protein [Function unknow	96.32
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.25
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.2
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.15
KOG3364	149	consensus Membrane protein involved in organellar	96.13
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.11
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.01
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.01
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.01
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.86
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.75
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	95.62
KOG0529	421	consensus Protein geranylgeranyltransferase type I	95.6
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	95.47
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.41
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.38
KOG3616	1636	consensus Selective LIM binding factor [Transcript	95.32
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.29
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	95.25
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.1
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.09
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.08
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.04
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.03
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.02
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.97
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.96
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.96
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.95
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.88
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.73
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	94.68
KOG1258	577	consensus mRNA processing protein [RNA processing	94.68
KOG1310	758	consensus WD40 repeat protein [General function pr	94.65
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.62
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.59
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.51
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.31
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	94.31
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.26
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.25
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.24
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.22
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.03
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.0
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	93.9
COG3947	361	Response regulator containing CheY-like receiver a	93.49
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.39
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.36
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.35
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.29
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.04
KOG0529	421	consensus Protein geranylgeranyltransferase type I	92.97
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	92.97
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.91
KOG2041	1189	consensus WD40 repeat protein [General function pr	92.57
COG3947	361	Response regulator containing CheY-like receiver a	92.21
COG5159	421	RPN6 26S proteasome regulatory complex component [	92.11
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.96
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	91.86
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	91.78
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.74
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.48
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.37
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	91.12
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	90.75
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	90.61
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	90.55
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	90.31
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	90.2
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.03
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	89.85
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	89.67
KOG2422	665	consensus Uncharacterized conserved protein [Funct	89.52
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	89.14
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.13
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.1
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	89.01
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.01
KOG2041	1189	consensus WD40 repeat protein [General function pr	88.95
COG4941	415	Predicted RNA polymerase sigma factor containing a	88.87
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	88.85
KOG2581	493	consensus 26S proteasome regulatory complex, subun	88.68
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.57
KOG2422	665	consensus Uncharacterized conserved protein [Funct	88.15
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.93
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	87.84
KOG3616	1636	consensus Selective LIM binding factor [Transcript	87.57
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	87.02
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.75
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.49
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.66
PF04212	69	MIT: MIT (microtubule interacting and transport) d	85.54
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	85.5
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	85.32
PF04212	69	MIT: MIT (microtubule interacting and transport) d	85.27
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	85.06
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	84.86
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	84.59
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	83.29
PHA02537	230	M terminase endonuclease subunit; Provisional	83.02
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	82.47
KOG3783	546	consensus Uncharacterized conserved protein [Funct	81.77
PF12854	34	PPR_1: PPR repeat	81.15
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	81.12
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	80.11

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=9.9e-34  Score=245.78  Aligned_cols=280  Identities=13%  Similarity=0.122  Sum_probs=246.3

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      +.|.-+.+|.++|.++..+|+...||..|++|+.++|+...+|+++|.+|...+.++.|+.+|.+|+.+.|+++.++-++
T Consensus       213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNl  292 (966)
T KOG4626|consen  213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNL  292 (966)
T ss_pred             hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccce
Confidence            46777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (320)
                      |.+|..+|..+-||.+|++||++.|+.++++.+++..+...|+..+|...+.      .+..+.+..+....++|+++..
T Consensus       293 a~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn------kaL~l~p~hadam~NLgni~~E  366 (966)
T KOG4626|consen  293 ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYN------KALRLCPNHADAMNNLGNIYRE  366 (966)
T ss_pred             EEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHH------HHHHhCCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999977752      2233334455566677888887


Q ss_pred             hhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHH
Q 020914          162 KHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFS  235 (320)
Q Consensus       162 ~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~  235 (320)
                      .|.++.|...|.+|++.++.-..-..+   +|..+|++++|+..|+.++.|+|.+..... +|..|..+|+.  |+.+|+
T Consensus       367 ~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~  446 (966)
T KOG4626|consen  367 QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT  446 (966)
T ss_pred             hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence            787888888887777777665444443   999999999999999999999999866655 99999999998  999999


Q ss_pred             HHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccccccccccccccccc
Q 020914          236 SAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGK  292 (320)
Q Consensus       236 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (320)
                      +||..     +|.++++..|+|+.+...|...+++..+++++..++.|..+..+...
T Consensus       447 rAI~~-----nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh  498 (966)
T KOG4626|consen  447 RAIQI-----NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH  498 (966)
T ss_pred             HHHhc-----CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence            99999     99999999999999999999999999999999888887766666543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-31  Score=231.38  Aligned_cols=280  Identities=13%  Similarity=0.099  Sum_probs=178.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |+.+++|.++|.++..+|+.+.|.++|..||+++|....+...+|..+...|+..+|..+|.+|+..+|..+-+|.++|.
T Consensus       147 p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~  226 (966)
T KOG4626|consen  147 PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGC  226 (966)
T ss_pred             chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcch
Confidence            55566666666666666666666666666666666555555555555555555555555555555555555555555555


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN------------------------------  133 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~------------------------------  133 (320)
                      ++...|+...|+..|++|++++|...+++++||.++...+.+++|...+.                              
T Consensus       227 ~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI  306 (966)
T KOG4626|consen  227 VFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAI  306 (966)
T ss_pred             HHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHH
Confidence            55555555555555555555555555555555555555555555543322                              


Q ss_pred             --HhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc---ccChhHHhhhcChhHHHHhhhhhhc
Q 020914          134 --IRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS---KVDAKVYFLLDKEKTDTEKYAPIVN  208 (320)
Q Consensus       134 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~---~~~~~~~~~lg~~~~A~~~~~~a~~  208 (320)
                        ++.+++..    +.-+..+.+++++....|...++...|.+|+...+.-.   .-..++|..+|+.+.|...|.++++
T Consensus       307 ~~Ykral~~~----P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~  382 (966)
T KOG4626|consen  307 DTYKRALELQ----PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE  382 (966)
T ss_pred             HHHHHHHhcC----CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence              12222222    22233344445555555555555555444443322211   0111199999999999999999999


Q ss_pred             cccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccccccccccccc
Q 020914          209 VDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIP  285 (320)
Q Consensus       209 ~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  285 (320)
                      +.|....... +|.+|...|.+  |+.+|+.|+.+     .|.+++++.|+|+++..+|+.+++...++.++..++-|..
T Consensus       383 v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI-----~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae  457 (966)
T KOG4626|consen  383 VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI-----KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE  457 (966)
T ss_pred             hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc-----CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH
Confidence            9999876665 89999999999  99999999999     9999999999999999999999999999998888887776


Q ss_pred             ccccccc
Q 020914          286 SSNEKGK  292 (320)
Q Consensus       286 ~~~~~~~  292 (320)
                      +..+.+.
T Consensus       458 AhsNLas  464 (966)
T KOG4626|consen  458 AHSNLAS  464 (966)
T ss_pred             HHhhHHH
Confidence            6666543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=3e-25  Score=207.99  Aligned_cols=264  Identities=19%  Similarity=0.260  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      .+..+..+|+.++..|+|++|+..|+++|.+.|+ +..+.++|.||..+|++++|+..++++++++|++..+|+.+|.+|
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~  204 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY  204 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3567889999999999999999999999999996 789999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHH------------------------------HHHHHHHHH----------------
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAE------------------------------VSRKIKRVS----------------  119 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~------------------------------~~~~l~~~~----------------  119 (320)
                      ..+|++++|+..|..++.+++.+..                              .+..++..+                
T Consensus       205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (615)
T TIGR00990       205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN  284 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence            9999999999888766544332211                              111111110                


Q ss_pred             --------------------HHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcch---------------------
Q 020914          120 --------------------QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE---------------------  158 (320)
Q Consensus       120 --------------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  158 (320)
                                          ...+.+++|++.+..  .++.. ...+.....+...|.+                     
T Consensus       285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~--al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~  361 (615)
T TIGR00990       285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEK--ALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD  361 (615)
T ss_pred             ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHH--HHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence                                011345555544321  11100 0001111111122222                     


Q ss_pred             ------hhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhh
Q 020914          159 ------ECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGS  221 (320)
Q Consensus       159 ------~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~  221 (320)
                            +...+......+.+++|+..+.+++.++|.          ++..+|++++|+..|+++++++|.....+. +|.
T Consensus       362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~  441 (615)
T TIGR00990       362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV  441 (615)
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence                  222333333344444455555555555443          677778888888888888888887655444 777


Q ss_pred             HHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914          222 CFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL  278 (320)
Q Consensus       222 ~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  278 (320)
                      ++..+|++  |+..|++++..     .|..+.+|..+|.++..+|+++++...++.+..
T Consensus       442 ~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~  495 (615)
T TIGR00990       442 TQYKEGSIASSMATFRRCKKN-----FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE  495 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            78888888  88888888877     666678888888888888888888777666443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=8.3e-25  Score=204.98  Aligned_cols=231  Identities=16%  Similarity=0.134  Sum_probs=145.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |..+.++..+|.+++..|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|+++.+|+.+|.
T Consensus       328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~  407 (615)
T TIGR00990       328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ  407 (615)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            55666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (320)
                      ++..+|++++|+.+|+++++++|++..++..+|.++...|++++|+....  ..+.    ..+..+.++..+|.++...|
T Consensus       408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~--~al~----~~P~~~~~~~~lg~~~~~~g  481 (615)
T TIGR00990       408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR--RCKK----NFPEAPDVYNYYGELLLDQN  481 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHH----hCCCChHHHHHHHHHHHHcc
Confidence            77777777777777777777777777777777777777777777755532  1111    11223334444555555555


Q ss_pred             HHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--H
Q 020914          164 VFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--A  230 (320)
Q Consensus       164 ~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A  230 (320)
                      .+..|+..+++|+...++.......          .+...|++++|+..+++++.++|.....+. +|.++...|++  |
T Consensus       482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA  561 (615)
T TIGR00990       482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA  561 (615)
T ss_pred             CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            5555555555555443321111111          122246666666666666666665543333 56666666666  6


Q ss_pred             HHHHHHHhch
Q 020914          231 DDSFSSAACL  240 (320)
Q Consensus       231 ~~~~~~al~~  240 (320)
                      +..|++|+++
T Consensus       562 i~~~e~A~~l  571 (615)
T TIGR00990       562 LKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHH
Confidence            6666666655

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.91  E-value=2.9e-23  Score=194.57  Aligned_cols=263  Identities=11%  Similarity=-0.017  Sum_probs=173.5

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      ..|.++.+++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+
T Consensus        71 ~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~l  150 (656)
T PRK15174         71 TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALH  150 (656)
T ss_pred             hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            35788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (320)
                      |.++..+|++++|+..+++++...|+++.++..++. +...|++++|+.....  .+...+...   .......+..+..
T Consensus       151 a~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~--~l~~~~~~~---~~~~~~l~~~l~~  224 (656)
T PRK15174        151 LRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARA--LLPFFALER---QESAGLAVDTLCA  224 (656)
T ss_pred             HHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHH--HHhcCCCcc---hhHHHHHHHHHHH
Confidence            999999999999999999999999999888876644 6677888888766431  111100000   0000111222233


Q ss_pred             hhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhH----HHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HH
Q 020914          162 KHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKT----DTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--AD  231 (320)
Q Consensus       162 ~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~----A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~  231 (320)
                      .|.+..+...+++++...+......-   .++...|++++    |+..+++++.++|.....+. +|.++...+++  |+
T Consensus       225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~  304 (656)
T PRK15174        225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI  304 (656)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            33333333333333322111100000   04455555553    56666666666665433332 55555555555  66


Q ss_pred             HHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          232 DSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       232 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      ..+++++.+     .|..+.++.++|.++..+|+++++...++.
T Consensus       305 ~~l~~al~l-----~P~~~~a~~~La~~l~~~G~~~eA~~~l~~  343 (656)
T PRK15174        305 PLLQQSLAT-----HPDLPYVRAMYARALRQVGQYTAASDEFVQ  343 (656)
T ss_pred             HHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666666655     445555566666666666666655544433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.1e-22  Score=172.91  Aligned_cols=230  Identities=18%  Similarity=0.183  Sum_probs=199.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   86 (320)
                      +.++...|..++-.|++..|...|+++|+++|.+...|..+|.+|...++.++-..+|++|..+||+++++|+.+|++++
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f  405 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF  405 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHH
Q 020914           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS  166 (320)
Q Consensus        87 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (320)
                      -+++|++|+..|++++.++|++..++..++-+..+.++++++....+      ....--+..++++..++.+...++.++
T Consensus       406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fe------e~kkkFP~~~Evy~~fAeiLtDqqqFd  479 (606)
T KOG0547|consen  406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFE------EAKKKFPNCPEVYNLFAEILTDQQQFD  479 (606)
T ss_pred             HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhCCCCchHHHHHHHHHhhHHhHH
Confidence            99999999999999999999999999999999999998888865532      222222445677888889999999999


Q ss_pred             HHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHH
Q 020914          167 FVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDS  233 (320)
Q Consensus       167 ~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~  233 (320)
                      .|.+.|+.|++.-++...+.-+          .+.-.+++.+|++.+++|++++|....... +|.+....++.  |++.
T Consensus       480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAiel  559 (606)
T KOG0547|consen  480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIEL  559 (606)
T ss_pred             HHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999998776652221111          444558999999999999999998766654 88888888888  9999


Q ss_pred             HHHHhchhC
Q 020914          234 FSSAACLVA  242 (320)
Q Consensus       234 ~~~al~~~~  242 (320)
                      |++++.+..
T Consensus       560 FEksa~lAr  568 (606)
T KOG0547|consen  560 FEKSAQLAR  568 (606)
T ss_pred             HHHHHHHHH
Confidence            999997743

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.3e-22  Score=171.09  Aligned_cols=261  Identities=21%  Similarity=0.258  Sum_probs=204.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      ..+.++..+|+-++..|+|++||++|.+||++.|+.+..|.+++-||..+|+|++.++...++|+++|+++.++++++.+
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA  192 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999888876555555


Q ss_pred             HHHccCHHHH----------------------------------------------------------------------
Q 020914           85 LEAMEQYDDA----------------------------------------------------------------------   94 (320)
Q Consensus        85 ~~~~~~~~~A----------------------------------------------------------------------   94 (320)
                      +..+|++++|                                                                      
T Consensus       193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~  272 (606)
T KOG0547|consen  193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK  272 (606)
T ss_pred             HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence            5555544444                                                                      


Q ss_pred             --------------------------------------------------------------------------------
Q 020914           95 --------------------------------------------------------------------------------   94 (320)
Q Consensus        95 --------------------------------------------------------------------------------   94 (320)
                                                                                                      
T Consensus       273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~  352 (606)
T KOG0547|consen  273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA  352 (606)
T ss_pred             CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence                                                                                            


Q ss_pred             ---------------------------HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHH
Q 020914           95 ---------------------------LSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF  147 (320)
Q Consensus        95 ---------------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  147 (320)
                                                 ...|.+|.+++|+++++|+..|+++..++++++|++-+      +.+..+.+.
T Consensus       353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF------~Kai~L~pe  426 (606)
T KOG0547|consen  353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF------QKAISLDPE  426 (606)
T ss_pred             HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH------HHHhhcChh
Confidence                                       44777777778888888888888888888888885442      233333333


Q ss_pred             HHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCcc-----ch
Q 020914          148 KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPH-----TH  219 (320)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~-----~~  219 (320)
                      ..-.+..++-+.+..+.+..++..|++++..|+.+.....-   ++..++++++|++.|+.++++.|......     ..
T Consensus       427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV  506 (606)
T KOG0547|consen  427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV  506 (606)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence            33344445555666777888888888888888876655443   88889999999999999999998842111     12


Q ss_pred             hhH--HHH-hhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccc
Q 020914          220 GSC--FQF-LRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESP  276 (320)
Q Consensus       220 g~~--~~~-~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  276 (320)
                      |..  ..+ -+.+  |+...++|+++     +|.-..++.++|......|+.+++++-|+++
T Consensus       507 ~Ka~l~~qwk~d~~~a~~Ll~KA~e~-----Dpkce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  507 HKALLVLQWKEDINQAENLLRKAIEL-----DPKCEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             hhhHhhhchhhhHHHHHHHHHHHHcc-----CchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            222  222 2445  99999999999     8888999999999999999999998888763

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.7e-23  Score=184.13  Aligned_cols=207  Identities=18%  Similarity=0.199  Sum_probs=173.8

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      +.|..+++|..+|+++--+++++.|+++|++|++++|.++-+|..+|.=+.....+++|..+|+.||..+|.+..+||.+
T Consensus       416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl  495 (638)
T KOG1126|consen  416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL  495 (638)
T ss_pred             hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (320)
                      |.+|.++++++.|.-+|++|+.++|.+......+|.++...|+.++|+.+.+..-.      +++..+         .  
T Consensus       496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~------ld~kn~---------l--  558 (638)
T KOG1126|consen  496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH------LDPKNP---------L--  558 (638)
T ss_pred             hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh------cCCCCc---------h--
Confidence            99999999999999999999999999999999999999999988888665321100      000000         0  


Q ss_pred             hhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHh
Q 020914          162 KHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAA  238 (320)
Q Consensus       162 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al  238 (320)
                              ..       |.++     .+++.++++++|+..++.+.++.|.....+. +|.+|..+|+.  |+..|.=|.
T Consensus       559 --------~~-------~~~~-----~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~  618 (638)
T KOG1126|consen  559 --------CK-------YHRA-----SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL  618 (638)
T ss_pred             --------hH-------HHHH-----HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence                    00       1111     1778889999999999999988888765555 88888888887  999999998


Q ss_pred             chhCCCC
Q 020914          239 CLVAPKS  245 (320)
Q Consensus       239 ~~~~~~~  245 (320)
                      .++|+..
T Consensus       619 ~ldpkg~  625 (638)
T KOG1126|consen  619 DLDPKGA  625 (638)
T ss_pred             cCCCccc
Confidence            8855544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.89  E-value=4.7e-22  Score=186.47  Aligned_cols=264  Identities=11%  Similarity=0.006  Sum_probs=206.6

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      +|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.++...|++++|+..+++++..+|+++.++...+
T Consensus       106 ~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~  185 (656)
T PRK15174        106 NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL  185 (656)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999999887765


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQS-AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (320)
                       .+...|++++|+..++++++.+|.. ......++.++...|++++|+....  ..+..    .+....+...+|..+..
T Consensus       186 -~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~--~al~~----~p~~~~~~~~Lg~~l~~  258 (656)
T PRK15174        186 -SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGE--SALAR----GLDGAALRRSLGLAYYQ  258 (656)
T ss_pred             -HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHH--HHHhc----CCCCHHHHHHHHHHHHH
Confidence             4788999999999999999987643 4445556778888899999976643  22222    22334455556777666


Q ss_pred             hhHHHH----HHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HH
Q 020914          162 KHVFSF----VVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--AD  231 (320)
Q Consensus       162 ~~~~~~----a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~  231 (320)
                      .|.+..    +...+++++...+.......   .++...|++++|+..+++++.++|.....+. +|.++...|++  |+
T Consensus       259 ~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~  338 (656)
T PRK15174        259 SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS  338 (656)
T ss_pred             cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            666554    44444444443332111111   1788889999999999999999988754444 78889899999  99


Q ss_pred             HHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914          232 DSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL  278 (320)
Q Consensus       232 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  278 (320)
                      ..|++++..     +|..+.++...|.++..+|+.+++...++....
T Consensus       339 ~~l~~al~~-----~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~  380 (656)
T PRK15174        339 DEFVQLARE-----KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ  380 (656)
T ss_pred             HHHHHHHHh-----CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999987     666666676778888999999988877766433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=2.9e-22  Score=176.43  Aligned_cols=216  Identities=18%  Similarity=0.245  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------------------------CCCCHHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ----------------------------------DPSNPTLFSNRAAAFL   52 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------------------------~p~~~~~~~~lg~~~~   52 (320)
                      .-.+.++|..|+..++|++|..+|+.+-..                                  +|+.|+.|+.+|.||-
T Consensus       353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS  432 (638)
T KOG1126|consen  353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS  432 (638)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence            356789999999999999999999998555                                  4556777888888888


Q ss_pred             HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           53 HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        53 ~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .+++++.|+.+|++|+++||++.-+|..+|.=+..+.+|+.|..+|++||.++|.+..+|+.+|.++..+++++.|+   
T Consensus       433 LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae---  509 (638)
T KOG1126|consen  433 LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAE---  509 (638)
T ss_pred             hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHH---
Confidence            88888888888888888888777777777777777777888888888888888888888888877777777766662   


Q ss_pred             HHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHh
Q 020914          133 NIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEK  202 (320)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~  202 (320)
                                                                  -.|.+++.++|.          ++..+|+.++|+..
T Consensus       510 --------------------------------------------~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~  545 (638)
T KOG1126|consen  510 --------------------------------------------FHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQL  545 (638)
T ss_pred             --------------------------------------------HHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHH
Confidence                                                        234455556665          77889999999999


Q ss_pred             hhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcc
Q 020914          203 YAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFE  274 (320)
Q Consensus       203 ~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  274 (320)
                      |++|+.++|.....-. .+.++..+++|  |+..+|..-++     .|+-..++.-+|.++.++|+.+.++..|.
T Consensus       546 ~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-----vP~es~v~~llgki~k~~~~~~~Al~~f~  615 (638)
T KOG1126|consen  546 YEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL-----VPQESSVFALLGKIYKRLGNTDLALLHFS  615 (638)
T ss_pred             HHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence            9999999998865554 89999999999  99999999988     66667888899999999999988875554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.88  E-value=4.2e-21  Score=191.13  Aligned_cols=53  Identities=9%  Similarity=-0.068  Sum_probs=42.8

Q ss_pred             hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccc
Q 020914          219 HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESP  276 (320)
Q Consensus       219 ~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  276 (320)
                      +|.++...+++  |++.|++++..     +|.+++++++++.++...|+++++...++..
T Consensus       609 La~~~~~~g~~~~A~~~y~~al~~-----~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l  663 (1157)
T PRK11447        609 LADWAQQRGDYAAARAAYQRVLTR-----EPGNADARLGLIEVDIAQGDLAAARAQLAKL  663 (1157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            44555566677  99999999988     7777899999999999999999988777653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.87  E-value=8e-21  Score=185.59  Aligned_cols=271  Identities=15%  Similarity=0.146  Sum_probs=156.0

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.+...+..+|..+...|++++|+..+++++...|.++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus       563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  642 (899)
T TIGR02917       563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA  642 (899)
T ss_pred             CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            34555666677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhHHHHHH------------
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM-VQHLDEFKS------------  149 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~------------  149 (320)
                      .++...|++++|+..|+++++.+|++..++..++.++...|++++|..+......... .........            
T Consensus       643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A  722 (899)
T TIGR02917       643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA  722 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHH
Confidence            7777777777777777777777777666666666666666666666554321110000 000000000            


Q ss_pred             --------------HHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccC
Q 020914          150 --------------EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKA  212 (320)
Q Consensus       150 --------------~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~  212 (320)
                                    .....++..+...|....+...+++++...+......-   .++...|+.++|+..|+++++..|.
T Consensus       723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  802 (899)
T TIGR02917       723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD  802 (899)
T ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence                          11112222233333333333333333322211110000   0566677777777777777777665


Q ss_pred             cCCccc-hhhHHHHhhHH-HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914          213 FESPHT-HGSCFQFLRQY-ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL  278 (320)
Q Consensus       213 ~~~~~~-~g~~~~~~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  278 (320)
                      ...... +|.++...++- |+..+++++.+     .|..+..|..+|.++..+|+++++...+++...
T Consensus       803 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  865 (899)
T TIGR02917       803 NAVVLNNLAWLYLELKDPRALEYAEKALKL-----APNIPAILDTLGWLLVEKGEADRALPLLRKAVN  865 (899)
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            533322 45555555555 77777777766     444566666777777777777766666655433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.87  E-value=5.4e-21  Score=186.81  Aligned_cols=265  Identities=13%  Similarity=0.075  Sum_probs=201.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.+...+..+|.++...|++++|+..+++++..+|.+...+..++.+|...|++++|+..+++++...|+++.+|..+|
T Consensus       529 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  608 (899)
T TIGR02917       529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLG  608 (899)
T ss_pred             CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHH-----------------
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD-----------------  145 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------------  145 (320)
                      .++...|++++|+..|+++++.+|+++.++..++.++...|++++|......  .+...+...                 
T Consensus       609 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~  686 (899)
T TIGR02917       609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR--ALELKPDNTEAQIGLAQLLLAAKRTE  686 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999999999999999999999999877532  111111100                 


Q ss_pred             -------------HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC--hhHHhhhcChhHHHHhhhhhhccc
Q 020914          146 -------------EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD--AKVYFLLDKEKTDTEKYAPIVNVD  210 (320)
Q Consensus       146 -------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~--~~~~~~lg~~~~A~~~~~~a~~~~  210 (320)
                                   +.........|.++...|.+..+...+.+++...+......  ..++...|++++|++.++++++..
T Consensus       687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  766 (899)
T TIGR02917       687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH  766 (899)
T ss_pred             HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence                         00112222233333334444444444444433322210000  016777888888888888888887


Q ss_pred             cCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          211 KAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       211 ~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      |....... .|.++...|++  |+..|+++++.     .|.++.++.++|.++...|+ .+++..+++
T Consensus       767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~  828 (899)
T TIGR02917       767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-----APDNAVVLNNLAWLYLELKD-PRALEYAEK  828 (899)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence            77654443 77777778887  88888888877     66667888888888888888 666655554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.87  E-value=1.4e-20  Score=187.54  Aligned_cols=89  Identities=9%  Similarity=0.054  Sum_probs=44.9

Q ss_pred             HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCC-CCChhHhhhcccccccccC
Q 020914          189 VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKS-IISYPQVWRGQGLRKWRHS  264 (320)
Q Consensus       189 ~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~l~  264 (320)
                      ++...|++++|++.++++++..|....... +|.++...+++  |+..|++++...++.. ....+.++...|..+...|
T Consensus       646 ~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G  725 (1157)
T PRK11447        646 VDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG  725 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence            455556666666666655555554433322 45555555555  6666666654422211 1112234444555555556


Q ss_pred             cccchhhhccccc
Q 020914          265 QQDGFFVQFESPL  277 (320)
Q Consensus       265 ~~~~~~~~~~~~~  277 (320)
                      +.+.+...+..+.
T Consensus       726 ~~~~A~~~y~~Al  738 (1157)
T PRK11447        726 QPQQALETYKDAM  738 (1157)
T ss_pred             CHHHHHHHHHHHH
Confidence            6666655555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.87  E-value=1.7e-20  Score=159.89  Aligned_cols=128  Identities=16%  Similarity=0.202  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      +..+..++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..+|.++|.
T Consensus        61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  140 (296)
T PRK11189         61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI  140 (296)
T ss_pred             HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      ++...|++++|++.|+++++++|+++.....+ .+....++.++|+...
T Consensus       141 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l  188 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENL  188 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHH
Confidence            99999999999999999999999987422211 2233445667775543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.85  E-value=1.1e-19  Score=161.80  Aligned_cols=262  Identities=11%  Similarity=-0.001  Sum_probs=191.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKG   82 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg   82 (320)
                      ....+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..    ..++..+|
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La  114 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG  114 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            44567789999999999999999999999999999999999999999999999999999999854332    35788999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHH-HHHHHHhhhhcchhhh
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD-EFKSEMSEKYGAEECW  161 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  161 (320)
                      .+|...|++++|+..|+++++.+|.+..++..++.++...|++++|++....  .+...+... .........++..+..
T Consensus       115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~~~~la~~~~~  192 (389)
T PRK11788        115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAER--LEKLGGDSLRVEIAHFYCELAQQALA  192 (389)
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHH--HHHhcCCcchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999877432  111111100 0112223344555555


Q ss_pred             hhHHHHHHHHHHHHHHhHhhcccc---ChhHHhhhcChhHHHHhhhhhhccccCcCC--ccchhhHHHHhhHH--HHHHH
Q 020914          162 KHVFSFVVETMETAVKSWHETSKV---DAKVYFLLDKEKTDTEKYAPIVNVDKAFES--PHTHGSCFQFLRQY--ADDSF  234 (320)
Q Consensus       162 ~~~~~~a~~~~~~a~~~~~~~~~~---~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~--~~~~g~~~~~~~~~--A~~~~  234 (320)
                      .+....+...++++++..+.....   ...++...|++++|++.++++++.+|....  ...++.++...+++  |+..+
T Consensus       193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l  272 (389)
T PRK11788        193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL  272 (389)
T ss_pred             CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            566666666666665543321111   111677778888888888888877765421  12256677777777  88888


Q ss_pred             HHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccc
Q 020914          235 SSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESP  276 (320)
Q Consensus       235 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  276 (320)
                      ++++..     .|+... +..++..+...|+++++...++..
T Consensus       273 ~~~~~~-----~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~  308 (389)
T PRK11788        273 RRALEE-----YPGADL-LLALAQLLEEQEGPEAAQALLREQ  308 (389)
T ss_pred             HHHHHh-----CCCchH-HHHHHHHHHHhCCHHHHHHHHHHH
Confidence            888876     333332 366777788888888777666553

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.83  E-value=3.7e-19  Score=158.36  Aligned_cols=262  Identities=10%  Similarity=-0.020  Sum_probs=200.3

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY   78 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   78 (320)
                      .|+++..+..+|.++...|++++|+..+++++...+..    ..++..+|.+|...|++++|+..|+++++.+|.+..++
T Consensus        65 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  144 (389)
T PRK11788         65 DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGAL  144 (389)
T ss_pred             CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHH
Confidence            57788999999999999999999999999999854332    36789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhh
Q 020914           79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAE-----VSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSE  153 (320)
Q Consensus        79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  153 (320)
                      ..++.++...|++++|++.++++++..|.+..     .+..+|.++...|++++|+....  ..+...    +.......
T Consensus       145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--~al~~~----p~~~~~~~  218 (389)
T PRK11788        145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK--KALAAD----PQCVRASI  218 (389)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH--HHHhHC----cCCHHHHH
Confidence            99999999999999999999999999887633     45678888888999999977643  222221    22234455


Q ss_pred             hhcchhhhhhHHHHHHHHHHHHHHhHhhcc----ccChhHHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH
Q 020914          154 KYGAEECWKHVFSFVVETMETAVKSWHETS----KVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY  229 (320)
Q Consensus       154 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~----~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~  229 (320)
                      .++..+...|.+..|...++++....+...    .....+|...|+.++|+..+++++++.|+.......+.++...+++
T Consensus       219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~  298 (389)
T PRK11788        219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGP  298 (389)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCH
Confidence            567777777777777777777765432211    1111278889999999999999999988765444478888888888


Q ss_pred             --HHHHHHHHhchhCCCCCCChhHhh--hcccccccccCcccchhhhccc
Q 020914          230 --ADDSFSSAACLVAPKSIISYPQVW--RGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       230 --A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                        |+..|+++++.     .|+.....  ++........|+..+++..++.
T Consensus       299 ~~A~~~l~~~l~~-----~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~  343 (389)
T PRK11788        299 EAAQALLREQLRR-----HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD  343 (389)
T ss_pred             HHHHHHHHHHHHh-----CcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence              99999999988     55555443  3222212224466666655544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.83  E-value=3.6e-19  Score=145.76  Aligned_cols=107  Identities=25%  Similarity=0.404  Sum_probs=104.4

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      .+|.++...+.+|..++..|++..|+..|..|++.+|++-.+++.+|.+|..+|+..-|+..+.++|++.|+...+..++
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQS  108 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~  108 (320)
                      |.+++++|++++|...|.++|.-+|++
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~  139 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSN  139 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999965

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=1.6e-19  Score=145.90  Aligned_cols=122  Identities=34%  Similarity=0.578  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      ..++.+...|+-++..++|++|+..|.+||+++|.++..|+++|.+|.++|.++.|+++++.||.+||.+.++|..+|.+
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A  158 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA  158 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK  126 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  126 (320)
                      |..+|++++|++.|+++|+++|++...+..|..+...++...
T Consensus       159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  159 YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999988887766555444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.82  E-value=2e-19  Score=158.06  Aligned_cols=286  Identities=15%  Similarity=0.088  Sum_probs=215.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      +|.+.+.|+..-.+.+...+++.|...|.++-...| ...+|+.-+.....+++.++|+..++++|+..|++...|..+|
T Consensus       614 ~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlG  692 (913)
T KOG0495|consen  614 NPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLG  692 (913)
T ss_pred             CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHh
Confidence            466677777777778888888888888888877666 4689999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhh
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK  162 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (320)
                      +++.++++.+.|.+.|...++..|+.+..|..++.+.+..|...+|..++      +...--.+....++...-......
T Consensus       693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~il------drarlkNPk~~~lwle~Ir~ElR~  766 (913)
T KOG0495|consen  693 QIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSIL------DRARLKNPKNALLWLESIRMELRA  766 (913)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHH------HHHHhcCCCcchhHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999986554      333222233333333344445555


Q ss_pred             hHHHHHHHHHHHHHHhHhhccccChhHHhhhcC---hhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHH
Q 020914          163 HVFSFVVETMETAVKSWHETSKVDAKVYFLLDK---EKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSA  237 (320)
Q Consensus       163 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~---~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~a  237 (320)
                      |....+.....+|++.++....+.....+..++   ..++++.+.+.- .+|  ......+..|..-.++  |.++|++|
T Consensus       767 gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce-~dp--hVllaia~lfw~e~k~~kar~Wf~Ra  843 (913)
T KOG0495|consen  767 GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-HDP--HVLLAIAKLFWSEKKIEKAREWFERA  843 (913)
T ss_pred             CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc-CCc--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666667777777777777777666664333333   333333333321 122  2222367778888888  99999999


Q ss_pred             hchhCCCCCCChhHhhhcccccccccCcc---cchhhhccc--cccccccccccccccccccccCccccccc
Q 020914          238 ACLVAPKSIISYPQVWRGQGLRKWRHSQQ---DGFFVQFES--PLLRKLWFIPSSNEKGKTLCRDPEVLDIS  304 (320)
Q Consensus       238 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (320)
                      ++.     +|+++++|.+.-.....+|.-   ++.+..+++  |..+..| ...+++..+..|.+++||...
T Consensus       844 vk~-----d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W-~avSK~i~n~~~t~~eiL~~~  909 (913)
T KOG0495|consen  844 VKK-----DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW-QAVSKDIKNWRKTPEEILLLV  909 (913)
T ss_pred             Hcc-----CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH-HHHhhhHHhccCCHHHHHHHH
Confidence            999     899999999888777777743   333444433  7888888 788999999999998887553

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.82  E-value=2.4e-18  Score=164.68  Aligned_cols=271  Identities=11%  Similarity=0.066  Sum_probs=200.1

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|..+.++..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++. +..+|
T Consensus        45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la  123 (765)
T PRK10049         45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA  123 (765)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-H--HHHhHHHHHHHHhhhhcchh
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV-D--MVQHLDEFKSEMSEKYGAEE  159 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~  159 (320)
                      .++...|++++|+..|+++++++|++..++..++.++...+..+.|+......... +  ......+....+...+....
T Consensus       124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~  203 (765)
T PRK10049        124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR  203 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence            99999999999999999999999999999999999998888888887664321110 0  00000111111111111111


Q ss_pred             hhhhH---HHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCC--ccchhhHHH
Q 020914          160 CWKHV---FSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES--PHTHGSCFQ  224 (320)
Q Consensus       160 ~~~~~---~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~--~~~~g~~~~  224 (320)
                      ...+.   ...|+..++..+..++......+.          ++...|++++|+..|++++...+....  ....|.++.
T Consensus       204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl  283 (765)
T PRK10049        204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL  283 (765)
T ss_pred             ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence            11122   255666777666655444333332          356778999999999999988643211  112688888


Q ss_pred             HhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          225 FLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       225 ~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      ..+++  |+..|++++...|.. .+.....+..++..+...++++++..-++.
T Consensus       284 ~~g~~e~A~~~l~~~l~~~p~~-~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~  335 (765)
T PRK10049        284 KLHQPEKAQSILTELFYHPETI-ADLSDEELADLFYSLLESENYPGALTVTAH  335 (765)
T ss_pred             hcCCcHHHHHHHHHHhhcCCCC-CCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            89998  999999998763222 111234566666777888999988766554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.1e-18  Score=150.53  Aligned_cols=266  Identities=21%  Similarity=0.351  Sum_probs=201.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      .-....|+..+..|+|+.|+.+|..||.++|.+...|.++..+|..+|+|++|++.-.+.++++|+.+.+|..+|..+..
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~   82 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG   82 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence            44678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH------------------------------------------
Q 020914           88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK------------------------------------------  125 (320)
Q Consensus        88 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~------------------------------------------  125 (320)
                      +|+|++|+..|.+.|+.+|++......+..++......                                          
T Consensus        83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l  162 (539)
T KOG0548|consen   83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL  162 (539)
T ss_pred             cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence            99999999999999999999988877777665221000                                          


Q ss_pred             ---------HHHHHHHH---------------------------------------------------------------
Q 020914          126 ---------KRAQEVEN---------------------------------------------------------------  133 (320)
Q Consensus       126 ---------~~A~~~~~---------------------------------------------------------------  133 (320)
                               -.+.-...                                                               
T Consensus       163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~  242 (539)
T KOG0548|consen  163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET  242 (539)
T ss_pred             hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence                     00000000                                                               


Q ss_pred             ----HhhhhHHHHhH------------------------------------HHHHHHHhhhhcchhhhhhHHHHHHHHHH
Q 020914          134 ----IRSNVDMVQHL------------------------------------DEFKSEMSEKYGAEECWKHVFSFVVETME  173 (320)
Q Consensus       134 ----~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  173 (320)
                          +..++.....+                                    ...........|..+...+.+..++..+.
T Consensus       243 a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~  322 (539)
T KOG0548|consen  243 AIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ  322 (539)
T ss_pred             HHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence                00000000000                                    00011112223444444555555555565


Q ss_pred             HHHHhHhh-------------------ccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHH
Q 020914          174 TAVKSWHE-------------------TSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCF  223 (320)
Q Consensus       174 ~a~~~~~~-------------------~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~  223 (320)
                      +++..+++                   ...++|.          .++..|++..|+..|.+++..+|++...+- ++.||
T Consensus       323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~  402 (539)
T KOG0548|consen  323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY  402 (539)
T ss_pred             HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            55544443                   1111221          788899999999999999999999876665 89999


Q ss_pred             HHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914          224 QFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL  278 (320)
Q Consensus       224 ~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  278 (320)
                      ..++.+  |+++-++++++     +|.+..+|.-.|.++..+.+|+.++..+.+.+.
T Consensus       403 ~kL~~~~~aL~Da~~~ieL-----~p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  403 LKLGEYPEALKDAKKCIEL-----DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HHHhhHHHHHHHHHHHHhc-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999  99999999999     999999999999999999999999888776444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.82  E-value=1.2e-17  Score=151.93  Aligned_cols=264  Identities=17%  Similarity=0.126  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      ...+.++..|+.++..|++++|+..+.++|.++|.++.+|+.+|.+|..+|+.++|..+.-.|-.++|++.+.|..++..
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl  216 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL  216 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH------hHH--HH---------
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQ------HLD--EF---------  147 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~--~~---------  147 (320)
                      ..++|.+.+|+-+|.+|++.+|.+.......+.++...|+...|......  .+...+      ...  ..         
T Consensus       217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~--l~~~~p~~d~er~~d~i~~~~~~~~~~~  294 (895)
T KOG2076|consen  217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQ--LLQLDPPVDIERIEDLIRRVAHYFITHN  294 (895)
T ss_pred             HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHH--HHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999998765321  111110      000  00         


Q ss_pred             -----HHHHhhhh---------------cchhhhhhHHHHHHHHHHHHHH----------------------hHhhcccc
Q 020914          148 -----KSEMSEKY---------------GAEECWKHVFSFVVETMETAVK----------------------SWHETSKV  185 (320)
Q Consensus       148 -----~~~~~~~~---------------~~~~~~~~~~~~a~~~~~~a~~----------------------~~~~~~~~  185 (320)
                           ...+...+               ..++.....++.+...+-.-..                      .++....+
T Consensus       295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~  374 (895)
T KOG2076|consen  295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL  374 (895)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence                 00000000               0001111111111111111111                      00000000


Q ss_pred             C----------------------------------hh-----------HHhhhcChhHHHHhhhhhhccccCcC-Cccc-
Q 020914          186 D----------------------------------AK-----------VYFLLDKEKTDTEKYAPIVNVDKAFE-SPHT-  218 (320)
Q Consensus       186 ~----------------------------------~~-----------~~~~lg~~~~A~~~~~~a~~~~~~~~-~~~~-  218 (320)
                      .                                  +.           ++...|++.+|+..+..++...+... ..|. 
T Consensus       375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~  454 (895)
T KOG2076|consen  375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK  454 (895)
T ss_pred             CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence            0                                  00           77888999999999999988755442 2344 


Q ss_pred             hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          219 HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       219 ~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      +|.||..++.|  |+++|++++.+     .|+..++-..++..+..+|+.+++.+-++.
T Consensus       455 ~a~c~~~l~e~e~A~e~y~kvl~~-----~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~  508 (895)
T KOG2076|consen  455 LARCYMELGEYEEAIEFYEKVLIL-----APDNLDARITLASLYQQLGNHEKALETLEQ  508 (895)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhc-----CCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence            99999999999  99999999998     888889999999999999999998877765

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.82  E-value=1.5e-18  Score=131.67  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      ..++.+|.++...|++++|+.+|++++.++|.+..+|..+|.++..+|++++|+..|++++.++|+++.+++++|.++..
T Consensus        25 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         25 ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            34778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914           88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (320)
Q Consensus        88 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  122 (320)
                      +|++++|+..|++++++.|+++..+..++.+....
T Consensus       105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999888876543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.82  E-value=3.1e-18  Score=164.91  Aligned_cols=219  Identities=12%  Similarity=-0.026  Sum_probs=95.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914           14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD   93 (320)
Q Consensus        14 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~   93 (320)
                      |..+...|++++|+..|++++...|. ...+..+|.++...|++++|+.+|+++++++|++...+..++.....+|++++
T Consensus       516 A~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e  594 (987)
T PRK09782        516 AYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL  594 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence            33334444444444444444333332 22334444444444555555555555555444444444444444444455555


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHH
Q 020914           94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETME  173 (320)
Q Consensus        94 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  173 (320)
                      |+..|+++++++|+ ..++..+|.++...|++++|+..+  .    ....+.+....+...+|.++...|....++..++
T Consensus       595 Al~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l--~----~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~  667 (987)
T PRK09782        595 ALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDL--R----AALELEPNNSNYQAALGYALWDSGDIAQSREMLE  667 (987)
T ss_pred             HHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHH--H----HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            55555555555553 445555555555555555553332  1    1111122222333334444444444444444433


Q ss_pred             HHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCcc-chhhHHHHhhHH--HHHHHHHHhch
Q 020914          174 TAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQFLRQY--ADDSFSSAACL  240 (320)
Q Consensus       174 ~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~-~~g~~~~~~~~~--A~~~~~~al~~  240 (320)
                      +|++..+....+...   ++..+|++++|+..++++++++|...... ..|.+......+  |.+.+.++...
T Consensus       668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~  740 (987)
T PRK09782        668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF  740 (987)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            333332222111111   44555555555555555555555442222 244444444444  55555555544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.81  E-value=1.8e-19  Score=156.62  Aligned_cols=226  Identities=14%  Similarity=0.138  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 020914           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME   89 (320)
Q Consensus        10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~   89 (320)
                      -+..|..+++.|+..+|+-.|+.|+..+|+++++|..||.+....++-..||..+++|++++|++-.++..||..|...|
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHH
Q 020914           90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVV  169 (320)
Q Consensus        90 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  169 (320)
                      .-.+|..++.+-+...|........  ..   .+.+..-                            .-......+....
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~~l~~a--~~---~~~~~~~----------------------------~s~~~~~~l~~i~  414 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYVHLVSA--GE---NEDFENT----------------------------KSFLDSSHLAHIQ  414 (579)
T ss_pred             hHHHHHHHHHHHHHhCccchhcccc--Cc---cccccCC----------------------------cCCCCHHHHHHHH
Confidence            9999999999998888754322110  00   0000000                            0000000111122


Q ss_pred             HHHHHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhc
Q 020914          170 ETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAAC  239 (320)
Q Consensus       170 ~~~~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~  239 (320)
                      ..|-+|...  ....++|.       +|...|++++|+.+|+.|+..+|.+...|. +|..+.--.+.  |+..|.+|++
T Consensus       415 ~~fLeaa~~--~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  415 ELFLEAARQ--LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             HHHHHHHHh--CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence            233333322  22245555       677778999999999999999999988887 88888887777  9999999999


Q ss_pred             hhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          240 LVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      +     .|.|..+++|+|.++..+|-|+++..-+-+
T Consensus       493 L-----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  493 L-----QPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             c-----CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            9     999999999999999999999887654433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=2.2e-18  Score=146.22  Aligned_cols=194  Identities=12%  Similarity=0.108  Sum_probs=166.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 020914           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ   90 (320)
Q Consensus        11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~   90 (320)
                      .-.|+-|...++.+.|+.+|++|+++||....+|..+|.=|..+.+...|+++|++|++++|.+-.+|+.+|++|.-++.
T Consensus       334 CiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M  413 (559)
T KOG1155|consen  334 CIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM  413 (559)
T ss_pred             eeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc
Confidence            34678888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHH
Q 020914           91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVE  170 (320)
Q Consensus        91 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  170 (320)
                      ..=|+-+|++|+++.|.+...|..+|.++..+++.++|+..+.      .+.........++..+|+.+...+..++|..
T Consensus       414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk------rai~~~dte~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  414 HFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK------RAILLGDTEGSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH------HHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence            9999999999999999999999999999999999999977653      3333334445567778888888888888888


Q ss_pred             HHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccc
Q 020914          171 TMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVD  210 (320)
Q Consensus       171 ~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~  210 (320)
                      .|++.++.......+.+.          -+...+++++|..+...++.-+
T Consensus       488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~  537 (559)
T KOG1155|consen  488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE  537 (559)
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence            888888877666666664          4556677888877766666653

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.81  E-value=5.4e-19  Score=150.63  Aligned_cols=214  Identities=14%  Similarity=0.032  Sum_probs=146.3

Q ss_pred             cCCHHHHHHHHHHHHhc---CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 020914           20 AGNYLKAAALYTQAIKQ---DPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL   95 (320)
Q Consensus        20 ~g~~~~A~~~~~~al~~---~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~   95 (320)
                      .+..+.++..+.++|..   +|. .+..|+.+|.+|..+|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            45678899999999964   333 37889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHH
Q 020914           96 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETA  175 (320)
Q Consensus        96 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  175 (320)
                      ..|+++++++|++..++.++|.++...|++++|++...  ..+...+.... . .++.   ......+....++..+.++
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~--~al~~~P~~~~-~-~~~~---~l~~~~~~~~~A~~~l~~~  191 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL--AFYQDDPNDPY-R-ALWL---YLAESKLDPKQAKENLKQR  191 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHhCCCCHH-H-HHHH---HHHHccCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999977642  22222221110 0 0000   0111123344444444443


Q ss_pred             HHhHhhccccChhHHhhhcChhHH--HHh----hhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhch
Q 020914          176 VKSWHETSKVDAKVYFLLDKEKTD--TEK----YAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACL  240 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~lg~~~~A--~~~----~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~  240 (320)
                      +............+...+|+...+  ++.    ++...++.|.....+. +|.++...|++  |+.+|++|+..
T Consensus       192 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        192 YEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            322111110111144556665433  222    2222233443333333 77778888888  88888888877

>PRK12370 invasion protein regulator; Provisional

Probab=99.81  E-value=1.3e-18  Score=160.81  Aligned_cols=126  Identities=17%  Similarity=0.133  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHhcCCCC
Q 020914            7 EMSLKDKGNEFFKA---GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---------KLNKALADAETTISLNPQW   74 (320)
Q Consensus         7 a~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~l~p~~   74 (320)
                      +..++.+|...+..   +++++|+.+|++|++++|+++.+|..+|.++..++         ++++|+..++++++++|++
T Consensus       258 a~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~  337 (553)
T PRK12370        258 STMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN  337 (553)
T ss_pred             HHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC
Confidence            33466677766544   45789999999999999999999999999987554         4899999999999999999


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +.+|..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+...
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~  395 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI  395 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999997764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.81  E-value=9.8e-19  Score=168.36  Aligned_cols=255  Identities=9%  Similarity=-0.091  Sum_probs=196.7

Q ss_pred             hH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            4 EA--EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         4 p~--~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      |.  ++.+++.+|.++.. +++.+|+..|.+++...|++. ....+|.++...|++++|+..|++++...|.+ ..++.+
T Consensus       472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~l  548 (987)
T PRK09782        472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAA  548 (987)
T ss_pred             CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHH
Confidence            55  88999999999998 899999999999999999754 46677888889999999999999998876664 567899


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (320)
                      |.++...|++++|+.+|+++++.+|++......++......|++++|+..+  ...+...+    . ...+..++.++..
T Consensus       549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~--~~AL~l~P----~-~~a~~~LA~~l~~  621 (987)
T PRK09782        549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDL--TRSLNIAP----S-ANAYVARATIYRQ  621 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHH--HHHHHhCC----C-HHHHHHHHHHHHH
Confidence            999999999999999999999999999888877776666679999997764  33333222    1 3445556666666


Q ss_pred             hhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHH
Q 020914          162 KHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFS  235 (320)
Q Consensus       162 ~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~  235 (320)
                      .|....|...+++++...+........   ++...|++++|+..|++++++.|.....+. +|.++..+|++  |+..|+
T Consensus       622 lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~  701 (987)
T PRK09782        622 RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR  701 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            666666666665555544433322222   788889999999999999999998865555 99999999999  999999


Q ss_pred             HHhchhCCCCCCChhHhhhcccccccccCcccchhhhc
Q 020914          236 SAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQF  273 (320)
Q Consensus       236 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  273 (320)
                      +|+++     .|+.+.+....|........+.++...+
T Consensus       702 ~Al~l-----~P~~a~i~~~~g~~~~~~~~~~~a~~~~  734 (987)
T PRK09782        702 LVIDD-----IDNQALITPLTPEQNQQRFNFRRLHEEV  734 (987)
T ss_pred             HHHhc-----CCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999     5555666666666555555555554433

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=4.1e-18  Score=147.79  Aligned_cols=130  Identities=18%  Similarity=0.147  Sum_probs=125.6

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|..+-.|+..|.-|+.-|++.+|..+|.|+..++|....+|...|.+|...|..++|+.+|.+|-++.|+.....+.+|
T Consensus       308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg  387 (611)
T KOG1173|consen  308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG  387 (611)
T ss_pred             CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence            58889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .=|..++.++-|.+.|.+|+.+.|.++-+...+|.+....+.+.+|....
T Consensus       388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f  437 (611)
T KOG1173|consen  388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF  437 (611)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999998774

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.78  E-value=2.4e-17  Score=135.45  Aligned_cols=128  Identities=20%  Similarity=0.228  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      ..+..+..+|..++..|++++|+..++++++.+|.+..++..+|.++..+|++++|+..++++++.+|++..++..+|.+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           85 LEAMEQYDDALSAFQTALQYN--PQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +...|++++|++.|++++...  |.....+..+|.++...|++++|....
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL  158 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999864  556778888999999999999987664

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.1e-17  Score=153.11  Aligned_cols=221  Identities=14%  Similarity=0.142  Sum_probs=183.0

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   80 (320)
                      ++|.++.+++.+|.+.+..|+|..|+.+|++++.++|.. +.....+|.|++++|..+.|+..|+++++++|.++.++..
T Consensus       159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~  238 (1018)
T KOG2002|consen  159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA  238 (1018)
T ss_pred             hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence            579999999999999999999999999999999999986 6788999999999999999999999999999999999999


Q ss_pred             HHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcc
Q 020914           81 KGCILEAME---QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA  157 (320)
Q Consensus        81 lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (320)
                      ||.+-....   .+..++..+.++...+|.+|.+...|+.-+...|++..+..+..-  .+.. ........+..+.+|.
T Consensus       239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~--ai~~-t~~~~~~aes~Y~~gR  315 (1018)
T KOG2002|consen  239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH--AIKN-TENKSIKAESFYQLGR  315 (1018)
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH--HHHh-hhhhHHHHHHHHHHHH
Confidence            998877654   577899999999999999999999999999999999999777431  1111 1233455566777888


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHhhccccChh-----HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHh
Q 020914          158 EECWKHVFSFVVETMETAVKSWHETSKVDAK-----VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFL  226 (320)
Q Consensus       158 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~  226 (320)
                      .+...|+++.|..+|.++...-+.. .+.|.     ++...|+++.|..+|+++++..|+...... +|..|...
T Consensus       316 s~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  316 SYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             HHHhhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence            8888888888888888887766554 22232     888999999999999999988887643333 66665544

>PRK12370 invasion protein regulator; Provisional

Probab=99.78  E-value=2.2e-17  Score=152.60  Aligned_cols=130  Identities=13%  Similarity=0.057  Sum_probs=118.8

Q ss_pred             chHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914            3 AEAEEMSLKDKGNEFFKA---------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ   73 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   73 (320)
                      .|+++.++..+|.++...         +++++|+..+++|++++|+++.++..+|.++...|++++|+..|+++++++|+
T Consensus       291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~  370 (553)
T PRK12370        291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI  370 (553)
T ss_pred             CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            578888999999887643         44899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      ++.+++.+|.++...|++++|+..|+++++++|.++.++..++.++...|++++|+...
T Consensus       371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence            99999999999999999999999999999999999888777776677788899887663

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.76  E-value=7.7e-19  Score=149.13  Aligned_cols=249  Identities=11%  Similarity=0.030  Sum_probs=92.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914           11 KDKGNEFFKAGNYLKAAALYTQAIK-Q-DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (320)
Q Consensus        11 ~~~g~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   88 (320)
                      +.+|.+++..|++++|++.+.+.+. . .|+++..|..+|.+...++++++|+..|++++..+|.++..+..++.+ ...
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            4779999999999999999977654 4 488999999999999999999999999999999999999999999988 799


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHH
Q 020914           89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV  168 (320)
Q Consensus        89 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  168 (320)
                      +++++|+..++++.+..+ ++..+..+..++...++++++..+......    ....+....++..++.++...|....|
T Consensus        91 ~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A  165 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKA  165 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred             cccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999988764 566677777788888999888766432111    111123445566677777777777777


Q ss_pred             HHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhC
Q 020914          169 VETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVA  242 (320)
Q Consensus       169 ~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~  242 (320)
                      ...+++|++..+....+...   ++...|+.+++.+.+.......|.+...+. +|.++..+|++  |+.+|++++..  
T Consensus       166 ~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--  243 (280)
T PF13429_consen  166 LRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--  243 (280)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--
Confidence            77777777666654333222   666778999887788777776666555555 99999999999  99999999988  


Q ss_pred             CCCCCChhHhhhcccccccccCcccchh
Q 020914          243 PKSIISYPQVWRGQGLRKWRHSQQDGFF  270 (320)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~  270 (320)
                         +|..+.++...|.++...|+.+.++
T Consensus       244 ---~p~d~~~~~~~a~~l~~~g~~~~A~  268 (280)
T PF13429_consen  244 ---NPDDPLWLLAYADALEQAGRKDEAL  268 (280)
T ss_dssp             ---STT-HHHHHHHHHHHT---------
T ss_pred             ---ccccccccccccccccccccccccc
Confidence               8888999999999999999999987

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.75  E-value=7.7e-17  Score=147.66  Aligned_cols=253  Identities=15%  Similarity=0.181  Sum_probs=147.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      ..+++++.+|..+..+|+|++|..+|.+++..+|++ .-.++.+|.+|...|+++.|+.+|+++++..|++......+|.
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~  384 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC  384 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            345556666666666666666666666666665555 4555666666666666666666666666666666666666666


Q ss_pred             HHHHcc----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HhHHHHHHHHhhhhcch
Q 020914           84 ILEAME----QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMV-QHLDEFKSEMSEKYGAE  158 (320)
Q Consensus        84 ~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  158 (320)
                      +|...+    .-+.|..+..++++..|.+..+|..++.++....-+.. +..+  ..+++.. ......-+++..+.|..
T Consensus       385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~--~~A~d~L~~~~~~ip~E~LNNvasl  461 (1018)
T KOG2002|consen  385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAY--GNALDILESKGKQIPPEVLNNVASL  461 (1018)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHH--HHHHHHHHHcCCCCCHHHHHhHHHH
Confidence            665554    44555566666666666666666666655543222222 2221  1111111 01112345566666666


Q ss_pred             hhhhhHHHHHHHHHHHHHHhHhhccccCh--------h-----HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHH
Q 020914          159 ECWKHVFSFVVETMETAVKSWHETSKVDA--------K-----VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQ  224 (320)
Q Consensus       159 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~--------~-----~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~  224 (320)
                      +...|.+..|.+.++.|..........+.        .     +...++++..|.+.|..++...|.+...+. +| |..
T Consensus       462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~-~ma  540 (1018)
T KOG2002|consen  462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG-CMA  540 (1018)
T ss_pred             HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh-HHH
Confidence            77777777777777777665331111111        1     666677888888888888888888765554 44 333


Q ss_pred             H--hhHH-HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcc
Q 020914          225 F--LRQY-ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQ  266 (320)
Q Consensus       225 ~--~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~  266 (320)
                      .  ...+ |..++..++..     +...|.+|.-+|+++....+.
T Consensus       541 ~~k~~~~ea~~~lk~~l~~-----d~~np~arsl~G~~~l~k~~~  580 (1018)
T KOG2002|consen  541 RDKNNLYEASLLLKDALNI-----DSSNPNARSLLGNLHLKKSEW  580 (1018)
T ss_pred             HhccCcHHHHHHHHHHHhc-----ccCCcHHHHHHHHHHHhhhhh
Confidence            2  2224 88899998877     666678888888766555444

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3.4e-16  Score=133.05  Aligned_cols=253  Identities=16%  Similarity=0.170  Sum_probs=189.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-----------------------------HHHHHcc
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRA-----------------------------AAFLHLV   55 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-----------------------------~~~~~~g   55 (320)
                      .++..++..|.++-..|....|+..+..++...|-+-.+|..++                             .++..+.
T Consensus       162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~  241 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH  241 (559)
T ss_pred             chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999998887766665554                             3444455


Q ss_pred             CHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           56 KLNKALADAETTISL-NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENI  134 (320)
Q Consensus        56 ~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  134 (320)
                      +.++++..+++.+.. .|++...-...|.+.....++++|+..|+..++.+|-..+-....++++....+..+- .+.. 
T Consensus       242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL-s~LA-  319 (559)
T KOG1155|consen  242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL-SYLA-  319 (559)
T ss_pred             HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH-HHHH-
Confidence            566777777777776 7777777778888888888888888888888888886555444444444333221111 1100 


Q ss_pred             hhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhh
Q 020914          135 RSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYA  204 (320)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~  204 (320)
                          .....++..+++       .-+-.|++.-..+..++|+..|.++++++|+          =|..+.+...|++.|+
T Consensus       320 ----~~v~~idKyR~E-------TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR  388 (559)
T KOG1155|consen  320 ----QNVSNIDKYRPE-------TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR  388 (559)
T ss_pred             ----HHHHHhccCCcc-------ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence                011111122222       2233455666788888899999999999998          4566678999999999


Q ss_pred             hhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          205 PIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       205 ~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      +|++++|.+.-+|. +|+.|..++..  |+-.|++|+.+     .|+++..|..+|.||.++++.+++..++..
T Consensus       389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnDsRlw~aLG~CY~kl~~~~eAiKCykr  457 (559)
T KOG1155|consen  389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----KPNDSRLWVALGECYEKLNRLEEAIKCYKR  457 (559)
T ss_pred             HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            99999999988888 99999999985  99999999999     888899999999999999999998877755

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.74  E-value=2.7e-16  Score=122.54  Aligned_cols=127  Identities=19%  Similarity=0.188  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      -+.+...+|.-|+..|++..|...+++||+.+|++..+|..+|..|..+|+.+.|.+.|++|++++|++.+++.+.|.-+
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL  113 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           86 EAMEQYDDALSAFQTALQY--NPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      ..+|+|++|...|++|+..  .|....++.++|.|....|+++.|.+.+
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l  162 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL  162 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence            9999999999999999984  4556789999999999999999997764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=9.4e-17  Score=139.46  Aligned_cols=262  Identities=15%  Similarity=0.138  Sum_probs=181.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      .+.+.+..++..++..++|.+..+..+..++.+|-+..++-..-.|+..+|+..+=...-.+.+...|+.+-.|+..|.-
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y  321 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY  321 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence            45677888999999999999999999999999998877665544488999998888888888889999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhH
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV  164 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (320)
                      |...|++.+|..+|.|+..++|....+|...|..+...+..++|+..+.....+-      +....-...+|--+...+.
T Consensus       322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~------~G~hlP~LYlgmey~~t~n  395 (611)
T KOG1173|consen  322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM------PGCHLPSLYLGMEYMRTNN  395 (611)
T ss_pred             HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc------cCCcchHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999998999998876643211111      1111111112222333333


Q ss_pred             HHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCc------CC--ccchhhHHHHhhHH--HH
Q 020914          165 FSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAF------ES--PHTHGSCFQFLRQY--AD  231 (320)
Q Consensus       165 ~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~------~~--~~~~g~~~~~~~~~--A~  231 (320)
                      +..|...|.+|....+...-+...   +.+..+.+.+|..+|+.++..-++.      +.  ...+|.++..+++|  |+
T Consensus       396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            444444444443333221111111   5555667777777777777322111      11  11277777777777  78


Q ss_pred             HHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccccc
Q 020914          232 DSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPL  277 (320)
Q Consensus       232 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  277 (320)
                      ..|++||.+     .|.++.++...|-++..+|..+.+..-|-+++
T Consensus       476 ~~~q~aL~l-----~~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  476 DYYQKALLL-----SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHHHHHHHc-----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            888888866     66667777777777777777777766555443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.73  E-value=2.9e-16  Score=117.00  Aligned_cols=103  Identities=9%  Similarity=0.015  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      ++.-+.++..|..++..|++++|...|+-+..++|.++..|+++|.|+..+|+|++|+..|.+++.++|+++.++++.|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCC
Q 020914           84 ILEAMEQYDDALSAFQTALQYNP  106 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p  106 (320)
                      |++.+|+.+.|++.|+.++....
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999874

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.73  E-value=8e-16  Score=127.27  Aligned_cols=113  Identities=22%  Similarity=0.298  Sum_probs=103.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---H
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK---G   77 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~   77 (320)
                      +..+..++.+|..++..|++++|+..|++++..+|.++   .+++.+|.++...|++++|+..|+++++.+|+++.   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            45678999999999999999999999999999999876   68899999999999999999999999999998776   7


Q ss_pred             HHHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914           78 YFRKGCILEAM--------EQYDDALSAFQTALQYNPQSAEVSRKIK  116 (320)
Q Consensus        78 ~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~l~  116 (320)
                      ++.+|.++...        |++++|++.|+++++.+|++..++..+.
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            99999999987        8999999999999999999987765443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=99.72  E-value=7.7e-16  Score=131.25  Aligned_cols=223  Identities=11%  Similarity=-0.005  Sum_probs=165.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      |+..+++--.-.++...+++++|+..+.++|+++|++..+|..+|.++..+| ++++++..++++++.+|++..+|+.+|
T Consensus        34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~  113 (320)
T PLN02789         34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR  113 (320)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence            4455566555566778899999999999999999999999999999999999 689999999999999999999999999


Q ss_pred             HHHHHccCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhh
Q 020914           83 CILEAMEQY--DDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC  160 (320)
Q Consensus        83 ~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (320)
                      .++..+|+.  ++++..++++++++|.+..+|...+.+....|.++++++...  ..+...           .....++.
T Consensus       114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~--~~I~~d-----------~~N~sAW~  180 (320)
T PLN02789        114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH--QLLEED-----------VRNNSAWN  180 (320)
T ss_pred             HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHC-----------CCchhHHH
Confidence            999999974  788999999999999999999999999999999998876642  111111           11122222


Q ss_pred             hhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHH----hhHH--HHHH
Q 020914          161 WKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQF----LRQY--ADDS  233 (320)
Q Consensus       161 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~----~~~~--A~~~  233 (320)
                      .++..-...          ..   +..    .....++++++..+++.++|.....|. +|.++..    +.+.  |++.
T Consensus       181 ~R~~vl~~~----------~~---l~~----~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~  243 (320)
T PLN02789        181 QRYFVITRS----------PL---LGG----LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV  243 (320)
T ss_pred             HHHHHHHhc----------cc---ccc----ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence            222110000          00   000    001134677788899999999998887 6666665    3333  8888


Q ss_pred             HHHHhchhCCCCCCChhHhhhccccccc
Q 020914          234 FSSAACLVAPKSIISYPQVWRGQGLRKW  261 (320)
Q Consensus       234 ~~~al~~~~~~~~~~~~~~~~~~~~~~~  261 (320)
                      +.+++..     +|..+.+.-.++.++.
T Consensus       244 ~~~~~~~-----~~~s~~al~~l~d~~~  266 (320)
T PLN02789        244 CLEVLSK-----DSNHVFALSDLLDLLC  266 (320)
T ss_pred             HHHhhcc-----cCCcHHHHHHHHHHHH
Confidence            8888875     5665666666665554

>TIGR00540 hemY_coli hemY protein

Probab=99.71  E-value=2.6e-15  Score=134.00  Aligned_cols=263  Identities=10%  Similarity=-0.008  Sum_probs=194.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-KGYFRKGCI   84 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~lg~~   84 (320)
                      .+......|...+..|+++.|.+...++.+..|+....+...|.+...+|+++.|...+.++.+..|++. .+....+.+
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l  162 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI  162 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence            4556678899999999999999999999999998888888999999999999999999999999999885 566668999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHh------------HH-----
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV--DMVQH------------LD-----  145 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~------------~~-----  145 (320)
                      +...|++++|...+++.++..|+++.++..++.++...|++++|.+........  .....            +.     
T Consensus       163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~  242 (409)
T TIGR00540       163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD  242 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999888764321110  00000            00     


Q ss_pred             ----H-------------HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcccc-----ChhHHhhhcChhHHHHhh
Q 020914          146 ----E-------------FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV-----DAKVYFLLDKEKTDTEKY  203 (320)
Q Consensus       146 ----~-------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-----~~~~~~~lg~~~~A~~~~  203 (320)
                          .             ..+.+...++..+...|..+.|...++++++..++....     ..-.....++...+++.+
T Consensus       243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~  322 (409)
T TIGR00540       243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI  322 (409)
T ss_pred             cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence                0             122333334444555555666666666665544443311     000233346777888888


Q ss_pred             hhhhccccCcC--Ccc-chhhHHHHhhHH--HHHHHH--HHhchhCCCCCCChhHhhhcccccccccCcccchhhhcc
Q 020914          204 APIVNVDKAFE--SPH-THGSCFQFLRQY--ADDSFS--SAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFE  274 (320)
Q Consensus       204 ~~a~~~~~~~~--~~~-~~g~~~~~~~~~--A~~~~~--~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  274 (320)
                      +++++..|.+.  ... .+|.++...+++  |.+.|+  ++++.     .|+... +..+|.+++.+|+.+++..-+.
T Consensus       323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-----~p~~~~-~~~La~ll~~~g~~~~A~~~~~  394 (409)
T TIGR00540       323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-----QLDAND-LAMAADAFDQAGDKAEAAAMRQ  394 (409)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----CCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence            88888888876  333 388888888888  999999  46555     444444 4588888999998887754443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.71  E-value=1e-15  Score=146.62  Aligned_cols=260  Identities=12%  Similarity=0.054  Sum_probs=187.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |.++........+....|++++|+..+.+++..+|..+.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~   91 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL   91 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44455556666888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (320)
                      ++...|++++|+..++++++.+|+++. +..+|.++...|+.++|+...  ...+...    +....+...++.+....+
T Consensus        92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l--~~al~~~----P~~~~~~~~la~~l~~~~  164 (765)
T PRK10049         92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAM--TQALPRA----PQTQQYPTEYVQALRNNR  164 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHH--HHHHHhC----CCCHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999 999999999999999997664  3333322    223333334455554444


Q ss_pred             HHHHHHHHHHHHHHhHh---hccccChh-----HH-----hhhcCh---hHHHHhhhhhhccccCc---CCccch-----
Q 020914          164 VFSFVVETMETAVKSWH---ETSKVDAK-----VY-----FLLDKE---KTDTEKYAPIVNVDKAF---ESPHTH-----  219 (320)
Q Consensus       164 ~~~~a~~~~~~a~~~~~---~~~~~~~~-----~~-----~~lg~~---~~A~~~~~~a~~~~~~~---~~~~~~-----  219 (320)
                      ....|+..++++.. .+   ..+..++.     ..     ...+++   ++|++.++.+++..|..   ......     
T Consensus       165 ~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~  243 (765)
T PRK10049        165 LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR  243 (765)
T ss_pred             ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence            44545544443221 00   00000111     11     112233   77899999998663322   211111     


Q ss_pred             hhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          220 GSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       220 g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      ...+...+++  |+..|+++++..+  ..|.++..|.  |.++..+|+++++...++.
T Consensus       244 l~~Ll~~g~~~eA~~~~~~ll~~~~--~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~  297 (765)
T PRK10049        244 LGALLARDRYKDVISEYQRLKAEGQ--IIPPWAQRWV--ASAYLKLHQPEKAQSILTE  297 (765)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhccCC--CCCHHHHHHH--HHHHHhcCCcHHHHHHHHH
Confidence            1223456777  9999999886622  2355566665  7789999999998776655

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=1e-15  Score=133.60  Aligned_cols=222  Identities=13%  Similarity=0.103  Sum_probs=148.4

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH-
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR-   80 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-   80 (320)
                      ..|.++++|..+|.+....++=..||..+++|++++|++-.++..||.+|...|.-.+|+.++.+=|...|.....-.. 
T Consensus       314 qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~  393 (579)
T KOG1125|consen  314 QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAG  393 (579)
T ss_pred             hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccC
Confidence            4799999999999999999999999999999999999999999999999999999999999998877665432111000 


Q ss_pred             ------HHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHh
Q 020914           81 ------KGCILEAMEQYDDALSAFQTALQYNP--QSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMS  152 (320)
Q Consensus        81 ------lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  152 (320)
                            .+.-......+..-.+.|-.+....|  .++++...||.++...|++++|+..+                    
T Consensus       394 ~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf--------------------  453 (579)
T KOG1125|consen  394 ENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF--------------------  453 (579)
T ss_pred             ccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH--------------------
Confidence                  00000001112222334444444445  44555555555555555444443221                    


Q ss_pred             hhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhh
Q 020914          153 EKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGS  221 (320)
Q Consensus       153 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~  221 (320)
                                                 +.++...|+          ++..-.+..+|+..|.+|+++.|.++-... +|.
T Consensus       454 ---------------------------~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI  506 (579)
T KOG1125|consen  454 ---------------------------EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI  506 (579)
T ss_pred             ---------------------------HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence                                       111111111          222445677888899999999999876655 899


Q ss_pred             HHHHhhHH--HHHHHHHHhchhCCCCCCCh-----hHhhhcccccccccCcccchh
Q 020914          222 CFQFLRQY--ADDSFSSAACLVAPKSIISY-----PQVWRGQGLRKWRHSQQDGFF  270 (320)
Q Consensus       222 ~~~~~~~~--A~~~~~~al~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~  270 (320)
                      ++..+|-|  |++.|-.||.+.+......-     ..+|-.+-.++..+++.+-..
T Consensus       507 S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  507 SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence            99999999  99999999988665332222     357777777777777666443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.70  E-value=1.4e-15  Score=114.63  Aligned_cols=114  Identities=20%  Similarity=0.259  Sum_probs=107.5

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      ..|.++...+.+|..++..|++++|+..+++++..+|.++.++..+|.++..+|++++|+..+++++.++|+++..++.+
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l   91 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA   91 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            36788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      |.++...|++++|+..|+++++++|++.......
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  125 (135)
T TIGR02552        92 AECLLALGEPESALKALDLAIEICGENPEYSELK  125 (135)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence            9999999999999999999999999987765443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.69  E-value=1.3e-15  Score=132.66  Aligned_cols=114  Identities=34%  Similarity=0.559  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   88 (320)
                      .+...|..++..|+|++|+..|.++++++|+++.+++++|.+|..+|++++|+..+++++.++|+++.+|+.+|.++..+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914           89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (320)
Q Consensus        89 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  122 (320)
                      |+|++|+..|+++++++|++..+...++.+...+
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988886655

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.69  E-value=1.1e-15  Score=121.97  Aligned_cols=113  Identities=13%  Similarity=0.105  Sum_probs=84.2

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccC--HHHHHH
Q 020914           20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL-EAMEQ--YDDALS   96 (320)
Q Consensus        20 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~-~~~~~--~~~A~~   96 (320)
                      .++.++++..++++++.+|+++.+|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+  +++|++
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            566677777777777777777777777777777777777777777777777777777777777764 55566  477777


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           97 AFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        97 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .++++++++|++..++..+|..+...|++++|+...
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~  167 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELW  167 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence            777777777777777777777777777777776653

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.69  E-value=3.7e-15  Score=122.41  Aligned_cols=130  Identities=19%  Similarity=0.208  Sum_probs=122.5

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN--PQWEKGYFR   80 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~   80 (320)
                      .|.++..+..+|.++...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..+++++...  |.....+..
T Consensus        61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  140 (234)
T TIGR02521        61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN  140 (234)
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence            467788999999999999999999999999999999999999999999999999999999999999864  567789999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +|.++...|++++|+..|+++++.+|++..++..++.++...|++++|....
T Consensus       141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  192 (234)
T TIGR02521       141 AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL  192 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999997764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=6e-17  Score=135.77  Aligned_cols=252  Identities=20%  Similarity=0.227  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      ..+.....+|..++.+.+|.+|+..|..||+..|+++..|.+++.++..+|+++.|....++.++++|+.+..+...++|
T Consensus        47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c  126 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC  126 (486)
T ss_pred             HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHH------------hhC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHH
Q 020914           85 LEAMEQYDDALSAFQTAL------------QYN------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE  146 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al------------~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  146 (320)
                      +..+++..+|.+.|+..-            .+-      |....+...-+.++...+++++|+.....      ...++.
T Consensus       127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~------ilkld~  200 (486)
T KOG0550|consen  127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID------ILKLDA  200 (486)
T ss_pred             hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH------HHhccc
Confidence            998888888876555211            111      22233344445677777777777544211      111112


Q ss_pred             HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh----------------------HHhhhcChhHHHHhhh
Q 020914          147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------------VYFLLDKEKTDTEKYA  204 (320)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------------------~~~~lg~~~~A~~~~~  204 (320)
                      ...+...--|.++......+.       ++.+|.+++.++|.                      -.+..|++..|.+.|.
T Consensus       201 ~n~~al~vrg~~~yy~~~~~k-------a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt  273 (486)
T KOG0550|consen  201 TNAEALYVRGLCLYYNDNADK-------AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT  273 (486)
T ss_pred             chhHHHHhcccccccccchHH-------HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence            222222222333333333333       33333333333332                      3445566666666666


Q ss_pred             hhhccccCcCCc-----cchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcc
Q 020914          205 PIVNVDKAFESP-----HTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFE  274 (320)
Q Consensus       205 ~a~~~~~~~~~~-----~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  274 (320)
                      .++.++|+....     +.++.+...+|+.  |+..-+.|+++     ++.|-.++.-+|+|+..+++++++...++
T Consensus       274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-----D~syikall~ra~c~l~le~~e~AV~d~~  345 (486)
T KOG0550|consen  274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-----DSSYIKALLRRANCHLALEKWEEAVEDYE  345 (486)
T ss_pred             HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666654221     1133333444444  66666666666     56666666666666666666665555443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=6.9e-15  Score=123.59  Aligned_cols=236  Identities=18%  Similarity=0.169  Sum_probs=181.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH----------------------------------HHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL----------------------------------FSNRAA   49 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------------------~~~lg~   49 (320)
                      |++..-+..+|++++..|++.+|+-.|+++..++|.....                                  |+--|.
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~  308 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ  308 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence            6678889999999999999999999999999999986433                                  333444


Q ss_pred             HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 020914           50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (320)
Q Consensus        50 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  129 (320)
                      ..+..+++..|+.+-+++|+.+|++.+++...|.++..+|+.++|+-.|+.|..+.|....+|..|-.+|...|++.+|.
T Consensus       309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~  388 (564)
T KOG1174|consen  309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN  388 (564)
T ss_pred             hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence            55555667899999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             HHHHHhhhhHHHHhHHHHHHHHhhhhc-chhhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhH
Q 020914          130 EVENIRSNVDMVQHLDEFKSEMSEKYG-AEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKT  198 (320)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~  198 (320)
                      .+-.  ..+.    .-+........+| .+...      --..-++|-..+++++.+.|.          .....|+++.
T Consensus       389 ~~An--~~~~----~~~~sA~~LtL~g~~V~~~------dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D  456 (564)
T KOG1174|consen  389 ALAN--WTIR----LFQNSARSLTLFGTLVLFP------DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKD  456 (564)
T ss_pred             HHHH--HHHH----Hhhcchhhhhhhcceeecc------CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccch
Confidence            5421  1111    1111112222222 11110      011234555566666777775          6777899999


Q ss_pred             HHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcc
Q 020914          199 DTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQ  256 (320)
Q Consensus       199 A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~  256 (320)
                      ++..+++++...|+......+|.++.....+  |++.|..|+.+     +|..-.+..|+
T Consensus       457 ~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~-----dP~~~~sl~Gl  511 (564)
T KOG1174|consen  457 IIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ-----DPKSKRTLRGL  511 (564)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----CccchHHHHHH
Confidence            9999999999988766555599999999998  99999999988     55555555543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.66  E-value=1.5e-15  Score=115.23  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=98.5

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 020914           26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN  105 (320)
Q Consensus        26 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  105 (320)
                      -...|+++++++|++   +..+|.++...|++++|+..|++++.++|.+..+|..+|.++..+|++++|+..|+++++++
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            357899999999974   67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914          106 PQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       106 p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      |+++.++..+|.++...|++++|+..+
T Consensus        89 p~~~~a~~~lg~~l~~~g~~~eAi~~~  115 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEPGLAREAF  115 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999997764

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.66  E-value=9.2e-15  Score=114.09  Aligned_cols=131  Identities=18%  Similarity=0.138  Sum_probs=123.6

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFR   80 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~   80 (320)
                      .|+...+|..++.+|...|+.+.|.+.|++|+.++|++.++++|.|..+..+|++++|...|++|+..  .|..+..|-+
T Consensus        65 DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN  144 (250)
T COG3063          65 DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLEN  144 (250)
T ss_pred             CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhh
Confidence            58889999999999999999999999999999999999999999999999999999999999999984  3566889999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                      +|.|-.+.|+++.|.++|+++|+++|+++.+...++..+...|++-.|....+
T Consensus       145 ~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         145 LGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             hHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999976543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.66  E-value=2.3e-14  Score=127.41  Aligned_cols=258  Identities=10%  Similarity=-0.018  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHhcCCCCHHH-HHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR-AAAFLHLVKLNKALADAETTISLNPQWEKG-YFRKGC   83 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~l~p~~~~~-~~~lg~   83 (320)
                      .+...+..|...+..|+|++|.+...++-+..+ ++..++.+ +.+....|+++.|...+.++.+.+|++..+ ....+.
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~  161 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR  161 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            456678889999999999999988887665433 35555555 555599999999999999999999998644 345599


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-H----HH----------------
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVD-M----VQ----------------  142 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~----~~----------------  142 (320)
                      ++...|++++|+..+++.++.+|+++.+...++.++...|++++|.++........ .    ..                
T Consensus       162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~  241 (398)
T PRK10747        162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA  241 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999986643221100 0    00                


Q ss_pred             ---------------hHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-----HHhhhcChhHHHHh
Q 020914          143 ---------------HLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----VYFLLDKEKTDTEK  202 (320)
Q Consensus       143 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----~~~~lg~~~~A~~~  202 (320)
                                     ...+..+.+...++......|....+.+.+++++..     .-++.     .....++.+++++.
T Consensus       242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-----~~~~~l~~l~~~l~~~~~~~al~~  316 (398)
T PRK10747        242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-----QYDERLVLLIPRLKTNNPEQLEKV  316 (398)
T ss_pred             hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCHHHHHHHhhccCCChHHHHHH
Confidence                           000112233334455555555566666666555431     11222     22344889999999


Q ss_pred             hhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          203 YAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       203 ~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      .+..++..|++..... .|.++...+++  |.+.|+++++.     .|+... +..++.++.++|+.+++...+.+
T Consensus       317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-----~P~~~~-~~~La~~~~~~g~~~~A~~~~~~  386 (398)
T PRK10747        317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-----RPDAYD-YAWLADALDRLHKPEEAAAMRRD  386 (398)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999998765554 89999999999  99999999988     666543 45678889999998887655544

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.65  E-value=1.3e-14  Score=129.17  Aligned_cols=177  Identities=12%  Similarity=0.114  Sum_probs=133.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL----   70 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   70 (320)
                      .|........+|..|..+|+|+.|+..++.|+++        .|.-......+|.+|..++++.+|+..|++|+.+    
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            4666777888999999999999999999999988        6665677777999999999999999999999987    


Q ss_pred             ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020914           71 ----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP--------QSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV  138 (320)
Q Consensus        71 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  138 (320)
                          +|..+.++.+||.+|...|+|++|..++++|+++..        .-...+..++.+....+++++|..++.  ..+
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q--~al  352 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ--KAL  352 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH--HHH
Confidence                355567899999999999999999999999999832        224457777888888889999887753  222


Q ss_pred             HHHH----hHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhh
Q 020914          139 DMVQ----HLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE  181 (320)
Q Consensus       139 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~  181 (320)
                      ....    ......+.+...+|..+...|.+.+|...+++|+...+.
T Consensus       353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~  399 (508)
T KOG1840|consen  353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE  399 (508)
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            2221    111234455555566566556566666666655555443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=5.3e-15  Score=128.12  Aligned_cols=121  Identities=42%  Similarity=0.685  Sum_probs=115.6

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      .+|..+..-...|+.++..|+|..|+..|.+||..+|+++.+|.|+|.||..+|.+..|+.+.+.+++++|++..+|.+.
T Consensus       353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK  432 (539)
T KOG0548|consen  353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK  432 (539)
T ss_pred             hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            35777888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  122 (320)
                      |.++..+.+|+.|++.|+++++.+|++.++...+..+...+
T Consensus       433 g~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  433 GAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999988887764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.64  E-value=1.8e-14  Score=117.78  Aligned_cols=255  Identities=15%  Similarity=0.154  Sum_probs=168.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQD---PS-------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ   73 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   73 (320)
                      |.-+.++++  .+++..++...|-......++++   |.       +...-..+|.||.++|-+.+|...++.+|+..| 
T Consensus       178 p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-  254 (478)
T KOG1129|consen  178 PTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-  254 (478)
T ss_pred             hHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-
Confidence            444455554  46677777777776666555442   21       123335689999999999999999999998776 


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhh
Q 020914           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSE  153 (320)
Q Consensus        74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  153 (320)
                      .++.+..++.+|.+..+...|+..|...++..|.+.......+++++.+++++.|.+++....  +    ..+...+...
T Consensus       255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl--k----~~~~nvEaiA  328 (478)
T KOG1129|consen  255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL--K----LHPINVEAIA  328 (478)
T ss_pred             chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH--h----cCCccceeee
Confidence            678888899999999999999999999999999999999889999888888888866642110  0    0011111111


Q ss_pred             hhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCcc-chhhHHHHhhHH--H
Q 020914          154 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQFLRQY--A  230 (320)
Q Consensus       154 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~-~~g~~~~~~~~~--A  230 (320)
                      ..+                               .-|+.-++.+-|+.+|.+.++++-.....+ .+|.|-...++|  +
T Consensus       329 cia-------------------------------~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~  377 (478)
T KOG1129|consen  329 CIA-------------------------------VGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV  377 (478)
T ss_pred             eee-------------------------------eccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence            111                               156666777777777777777754443333 267776666776  7


Q ss_pred             HHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccccccccccccccccccccccccCccc
Q 020914          231 DDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEV  300 (320)
Q Consensus       231 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (320)
                      +.+|++|+.......  .-.++|+|+|.+....|++.-+..+|.-.+..++....++++.++.-.+..+|
T Consensus       378 L~sf~RAlstat~~~--~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  378 LPSFQRALSTATQPG--QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI  445 (478)
T ss_pred             HHHHHHHHhhccCcc--hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence            777777776543221  12566777777777777776666666555555555555555555554444444

>PLN02789 farnesyltranstransferase

Probab=99.63  E-value=4.1e-14  Score=120.70  Aligned_cols=120  Identities=12%  Similarity=0.086  Sum_probs=114.0

Q ss_pred             chHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHhcCCCCHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAG-NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL--NKALADAETTISLNPQWEKGYF   79 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~l~p~~~~~~~   79 (320)
                      +|++..+|..+|.++...| ++++|+..+.++++.+|++..+|+.++.++..+|+.  ++++.+++++++++|++..+|.
T Consensus        67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~  146 (320)
T PLN02789         67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS  146 (320)
T ss_pred             CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH
Confidence            6889999999999999999 689999999999999999999999999999999974  7889999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (320)
Q Consensus        80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  122 (320)
                      .+|.++..+|++++|++++.++|+.+|.+..+|...+.+....
T Consensus       147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        147 HRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999887654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.63  E-value=1.1e-14  Score=116.21  Aligned_cols=113  Identities=13%  Similarity=0.165  Sum_probs=105.0

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHhcCCCCHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAF-LHLVK--LNKALADAETTISLNPQWEKGYF   79 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~l~p~~~~~~~   79 (320)
                      +|+++..|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+  +++|...++++++++|+++.+++
T Consensus        69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~  148 (198)
T PRK10370         69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM  148 (198)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence            6889999999999999999999999999999999999999999999985 67787  59999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      .+|.+++.+|++++|+.+++++++++|.+..-...+
T Consensus       149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        149 LLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            999999999999999999999999999876554333

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.62  E-value=3e-15  Score=127.25  Aligned_cols=195  Identities=18%  Similarity=0.173  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      ++.++.+.|++.+..|++++|.+.|++|+.-+....++++++|.++..+|+.++|+++|-+.-.+--++++++++++.+|
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy  568 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY  568 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            45678899999999999999999999999999989999999999999999999999999988888888999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHH
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF  165 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (320)
                      ..+.+..+|++.+.++..+-|+++.++..|+.++...|+..+|....-     +.. ..-+...+..       .|.+.+
T Consensus       569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y-----dsy-ryfp~nie~i-------ewl~ay  635 (840)
T KOG2003|consen  569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY-----DSY-RYFPCNIETI-------EWLAAY  635 (840)
T ss_pred             HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh-----hcc-cccCcchHHH-------HHHHHH
Confidence            999999999999999999999999999999999999999888865421     111 1111122222       233444


Q ss_pred             HHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCc
Q 020914          166 SFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (320)
Q Consensus       166 ~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~  213 (320)
                      ..-.+..++++..|+++..+.|+          ++...|++++|.+.|...-.--|..
T Consensus       636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped  693 (840)
T KOG2003|consen  636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED  693 (840)
T ss_pred             HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence            44455566677777777777775          8889999999999998877665554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.62  E-value=1.2e-15  Score=129.61  Aligned_cols=230  Identities=13%  Similarity=0.066  Sum_probs=92.0

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++..|..+|.+....+++++|+..|++++..++.++..+..++.+ ...+++++|+..++++.+.++ ++..+....
T Consensus        40 ~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l  117 (280)
T PF13429_consen   40 PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSAL  117 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHH
Confidence            477888899999999999999999999999999999888888888888 789999999999999887664 567777788


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhh
Q 020914           83 CILEAMEQYDDALSAFQTALQYN--PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC  160 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (320)
                      .++...++++++...++++....  |.++..|..+|.++...|+.++|+..+  +..+...    +....+...++....
T Consensus       118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~--~~al~~~----P~~~~~~~~l~~~li  191 (280)
T PF13429_consen  118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY--RKALELD----PDDPDARNALAWLLI  191 (280)
T ss_dssp             H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH--HHHHHH-----TT-HHHHHHHHHHHC
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHcC----CCCHHHHHHHHHHHH
Confidence            88999999999999999977655  678889999999999999999997664  3343333    334444555666666


Q ss_pred             hhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHH
Q 020914          161 WKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSF  234 (320)
Q Consensus       161 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~  234 (320)
                      ..|....+...+.......+....+...   ++..+|++++|+..+++++..+|.+..... ++.++...|++  |...+
T Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~  271 (280)
T PF13429_consen  192 DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR  271 (280)
T ss_dssp             TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred             HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6777766555555544443333333332   899999999999999999999987654443 88888899998  88888


Q ss_pred             HHHhch
Q 020914          235 SSAACL  240 (320)
Q Consensus       235 ~~al~~  240 (320)
                      .+++..
T Consensus       272 ~~~~~~  277 (280)
T PF13429_consen  272 RQALRL  277 (280)
T ss_dssp             ------
T ss_pred             cccccc
Confidence            887743

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.61  E-value=1.1e-14  Score=129.76  Aligned_cols=235  Identities=13%  Similarity=0.122  Sum_probs=180.9

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q 020914           37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--------NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY----  104 (320)
Q Consensus        37 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----  104 (320)
                      +|.-..+...+|..|..+|++++|+..+++|+++        .|.-......+|.+|..+++|.+|+..|++||.+    
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            4555678888999999999999999999999998        5666666777999999999999999999999997    


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHh
Q 020914          105 ----NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMV--QHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKS  178 (320)
Q Consensus       105 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  178 (320)
                          +|.-..++.+|+.++...|++.+|....+....+...  ....+.........+......+.++.+..++.++++.
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence                4555678999999999999999998775433222211  1122334445555666677788888999999998888


Q ss_pred             HhhccccCh-h----------HHhhhcChhHHHHhhhhhhccccCcC---------CccchhhHHHHhhHH--HHHHHHH
Q 020914          179 WHETSKVDA-K----------VYFLLDKEKTDTEKYAPIVNVDKAFE---------SPHTHGSCFQFLRQY--ADDSFSS  236 (320)
Q Consensus       179 ~~~~~~~~~-~----------~~~~lg~~~~A~~~~~~a~~~~~~~~---------~~~~~g~~~~~~~~~--A~~~~~~  236 (320)
                      +.++..... .          .|...|++++|.+.|++++++.....         ..|.+|..+..++.+  |...|+.
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence            886554333 2          89999999999999999998864331         123366667777777  8888988


Q ss_pred             Hhchh--CCCCCCChhHhhhcccccccccCcccchhh
Q 020914          237 AACLV--APKSIISYPQVWRGQGLRKWRHSQQDGFFV  271 (320)
Q Consensus       237 al~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  271 (320)
                      ++.+.  -....|+....+.|++.+|..+|+++.+..
T Consensus       435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~  471 (508)
T KOG1840|consen  435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE  471 (508)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence            88775  122344556679999999999999998863

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.61  E-value=6.4e-15  Score=125.30  Aligned_cols=224  Identities=17%  Similarity=0.126  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914           10 LKDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus        10 ~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      -.++...++.+|  ++.+|.++-..|+.++..++.+..+.|.+-+..|++++|.+.|+.+|..+..+.++++++|..+..
T Consensus       457 a~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~  536 (840)
T KOG2003|consen  457 ANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA  536 (840)
T ss_pred             hhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH
Confidence            344555555543  688888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHH
Q 020914           88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSF  167 (320)
Q Consensus        88 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (320)
                      +|+.++|+++|-+.-.+--++.+++..++.++..+.+..+|++++.      ....+-+..+.+...+++.+...|+-.+
T Consensus       537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~------q~~slip~dp~ilskl~dlydqegdksq  610 (840)
T KOG2003|consen  537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM------QANSLIPNDPAILSKLADLYDQEGDKSQ  610 (840)
T ss_pred             hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH------HhcccCCCCHHHHHHHHHHhhcccchhh
Confidence            9999999999999999999999999999999999999999988752      2222334566777788888888888877


Q ss_pred             HHHHHHHHHHhHhhcccc---ChhHHhhhcChhHHHHhhhhhhccccCcCCccc--hhhHHHHhhHH--HHHHHHHHhch
Q 020914          168 VVETMETAVKSWHETSKV---DAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT--HGSCFQFLRQY--ADDSFSSAACL  240 (320)
Q Consensus       168 a~~~~~~a~~~~~~~~~~---~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~--~g~~~~~~~~~--A~~~~~~al~~  240 (320)
                      +.+.+-.....|+-.+..   ....|....=.++|+.+++++.-+.|+.. .|.  .+.|+...|.|  |.+.|...-..
T Consensus       611 afq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~-kwqlmiasc~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  611 AFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS-KWQLMIASCFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             hhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            777666555555543322   11256666678899999999999988753 343  78899999999  99999888766

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.60  E-value=2.9e-14  Score=132.92  Aligned_cols=130  Identities=12%  Similarity=0.008  Sum_probs=126.5

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++++++.+|.+....|++++|+..++.++++.|++..++.+++.++.+++++++|+..+++++..+|+++.+++.+|
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            46779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .++..+|++++|+..|++++..+|+++.++..+|.++...|+.++|...+
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~  211 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL  211 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998775

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=8.4e-14  Score=117.60  Aligned_cols=123  Identities=25%  Similarity=0.398  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETTISL   70 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (320)
                      .+......|+.+++.|+|..|...|++|+..-+..               ..++.|++.|+.++++|.+|+..++++|.+
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            35567889999999999999999999998763321               367999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        71 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      +|+|+.++|++|.++..+|+|+.|+..|++++++.|+|..+...+..+......+...
T Consensus       287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k  344 (397)
T KOG0543|consen  287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK  344 (397)
T ss_pred             CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999888777666554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.58  E-value=6.8e-14  Score=132.72  Aligned_cols=131  Identities=12%  Similarity=0.032  Sum_probs=116.6

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      ..|..+...+..+.+.+++|+++.|+..|+++++.+|.++.+...+..++...|+.++|+..+++++.-.|........+
T Consensus        29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal  108 (822)
T PRK14574         29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA  108 (822)
T ss_pred             cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence            46788999999999999999999999999999999999975555999999999999999999999994444455555556


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      |.++..+|++++|++.|+++++.+|+++.++..++.++...++.++|++..
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l  159 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQA  159 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            889999999999999999999999999999999989999999999997664

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.57  E-value=3.8e-13  Score=123.02  Aligned_cols=105  Identities=18%  Similarity=0.238  Sum_probs=102.7

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      ..|.++.+|+.+|.+|-.+|+.++|..+.-.|-.++|++.+.|..++....++|++.+|+-+|.+||+.+|.+.+..+.+
T Consensus       168 qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~er  247 (895)
T KOG2076|consen  168 QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYER  247 (895)
T ss_pred             hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            36888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCC
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNP  106 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p  106 (320)
                      +.+|.++|+...|...|.+++..+|
T Consensus       248 s~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  248 SSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHhChHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.57  E-value=3.2e-13  Score=119.46  Aligned_cols=244  Identities=13%  Similarity=0.128  Sum_probs=174.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |....+++.++.-.+..++|...+...+..++..|.+++.+-..|..+..+|+-++|......++..++...-+|+.+|.
T Consensus         4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl   83 (700)
T KOG1156|consen    4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGL   83 (700)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (320)
                      ++....+|++|+++|+.|++++|+|..+|.-++.+...+++++-..+....      ...+.+.....+..+.....-.|
T Consensus        84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~------LLql~~~~ra~w~~~Avs~~L~g  157 (700)
T KOG1156|consen   84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQ------LLQLRPSQRASWIGFAVAQHLLG  157 (700)
T ss_pred             HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHH------HHHhhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998877544211      11112222233333444445556


Q ss_pred             HHHHHHHHHHHHHHhHhhccccChh-------------HHhhhcChhHHHHhhhhhhc-cccCcCCccchhhHHHHhhHH
Q 020914          164 VFSFVVETMETAVKSWHETSKVDAK-------------VYFLLDKEKTDTEKYAPIVN-VDKAFESPHTHGSCFQFLRQY  229 (320)
Q Consensus       164 ~~~~a~~~~~~a~~~~~~~~~~~~~-------------~~~~lg~~~~A~~~~~~a~~-~~~~~~~~~~~g~~~~~~~~~  229 (320)
                      ....+.+..+.-.....  ..+.+.             +....|..++|++....--. +-.......+.+.++..++++
T Consensus       158 ~y~~A~~il~ef~~t~~--~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l  235 (700)
T KOG1156|consen  158 EYKMALEILEEFEKTQN--TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL  235 (700)
T ss_pred             HHHHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence            66666666555433322  111111             44455665665544432211 111112233467777888888


Q ss_pred             --HHHHHHHHhchhCCCCCCChhHhhhcccccc
Q 020914          230 --ADDSFSSAACLVAPKSIISYPQVWRGQGLRK  260 (320)
Q Consensus       230 --A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  260 (320)
                        |+..|..-+..     +|+..+-+.++-.++
T Consensus       236 EeA~~~y~~Ll~r-----nPdn~~Yy~~l~~~l  263 (700)
T KOG1156|consen  236 EEAVKVYRRLLER-----NPDNLDYYEGLEKAL  263 (700)
T ss_pred             HhHHHHHHHHHhh-----CchhHHHHHHHHHHH
Confidence              88888888866     444444344443444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.56  E-value=6.5e-14  Score=114.60  Aligned_cols=233  Identities=14%  Similarity=0.104  Sum_probs=173.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 020914           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ   90 (320)
Q Consensus        11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~   90 (320)
                      .++|++|+..|-+.+|...++.+++..| .++.+..++.+|.+..+...|+..+...+...|.++-.....+.++..+++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence            4689999999999999999999999888 689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHH
Q 020914           91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVE  170 (320)
Q Consensus        91 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  170 (320)
                      +++|.+.|+.+++.+|.+.++..-++.-+...++.+-|..++.  ..+.    +....+++..+.|.+-..-+.++.++ 
T Consensus       306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYR--RiLq----mG~~speLf~NigLCC~yaqQ~D~~L-  378 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYR--RILQ----MGAQSPELFCNIGLCCLYAQQIDLVL-  378 (478)
T ss_pred             HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHH--HHHH----hcCCChHHHhhHHHHHHhhcchhhhH-
Confidence            9999999999999999999998888888878888888866642  2221    22223334444444433333333333 


Q ss_pred             HHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhcccc--Cc-CCcc-chhhHHHHhhHH--HHHHHHHHhchhCCC
Q 020914          171 TMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDK--AF-ESPH-THGSCFQFLRQY--ADDSFSSAACLVAPK  244 (320)
Q Consensus       171 ~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~--~~-~~~~-~~g~~~~~~~~~--A~~~~~~al~~~~~~  244 (320)
                                                    ..+++++....  .. ...| .+|.+....|.+  |..+|+-|+..    
T Consensus       379 ------------------------------~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~----  424 (478)
T KOG1129|consen  379 ------------------------------PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS----  424 (478)
T ss_pred             ------------------------------HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc----
Confidence                                          33333333211  11 1122 256666666777  88888888866    


Q ss_pred             CCCChhHhhhcccccccccCcccchhhhcccccccccccccc
Q 020914          245 SIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPS  286 (320)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  286 (320)
                       +++..+++.|+|....+-|+.+++..-+..+....++....
T Consensus       425 -d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~  465 (478)
T KOG1129|consen  425 -DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV  465 (478)
T ss_pred             -CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence             77778888888888888888888766666655554443333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.56  E-value=1.7e-13  Score=109.31  Aligned_cols=129  Identities=18%  Similarity=0.209  Sum_probs=97.4

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      +|.+...+...|...+..|+|.+|+..+.++..++|++.++|..+|.+|.++|+.++|...|.+++++.|+.+.+..++|
T Consensus        96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg  175 (257)
T COG5010          96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG  175 (257)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence            34555566667777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      ..|.-.|+++.|...+..+....+.+..+..+++.+....|++++|..+
T Consensus       176 ms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         176 MSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence            7777777777777777777777777777777777777777777777655

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.56  E-value=4.9e-13  Score=126.96  Aligned_cols=271  Identities=13%  Similarity=0.076  Sum_probs=183.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |.....+..+|..+..+|++++|++.|+++++.+|+++.++..++.++...++.++|+..+++++..+|++... ..++.
T Consensus        99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~lay  177 (822)
T PRK14574         99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSY  177 (822)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHH
Confidence            34455666668899999999999999999999999999999999999999999999999999999999986554 56677


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----H-----HH-------------
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV----D-----MV-------------  141 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-----~~-------------  141 (320)
                      ++..+++..+|++.|+++++.+|++.+++..+..+....|-...|.++.......    +     ..             
T Consensus       178 L~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~  257 (822)
T PRK14574        178 LNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPT  257 (822)
T ss_pred             HHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccc
Confidence            7767888877999999999999999999888888877777776666553311100    0     00             


Q ss_pred             -------HhHHHHHH---HHhhhhcc----------hhhhhhHHHHHHHHHHHHHHhHhhcccc---Chh--------HH
Q 020914          142 -------QHLDEFKS---EMSEKYGA----------EECWKHVFSFVVETMETAVKSWHETSKV---DAK--------VY  190 (320)
Q Consensus       142 -------~~~~~~~~---~~~~~~~~----------~~~~~~~~~~a~~~~~~a~~~~~~~~~~---~~~--------~~  190 (320)
                             ..++....   .+....+.          ....+-..-...+.+.+++..|+.....   .|.        +|
T Consensus       258 ~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday  337 (822)
T PRK14574        258 RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY  337 (822)
T ss_pred             ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence                   00000000   00100000          0011111223345566666666553311   122        88


Q ss_pred             hhhcChhHHHHhhhhhhccccCc-----CCccchhhH--HHHhhHH--HHHHHHHHhchhC----------CCCCCChhH
Q 020914          191 FLLDKEKTDTEKYAPIVNVDKAF-----ESPHTHGSC--FQFLRQY--ADDSFSSAACLVA----------PKSIISYPQ  251 (320)
Q Consensus       191 ~~lg~~~~A~~~~~~a~~~~~~~-----~~~~~~g~~--~~~~~~~--A~~~~~~al~~~~----------~~~~~~~~~  251 (320)
                      ..+++.++|+..|..++.-++..     ......+.+  +...++|  |....++..+..|          ..++|++.+
T Consensus       338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~  417 (822)
T PRK14574        338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE  417 (822)
T ss_pred             HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence            89999999999999987755321     111113333  3345567  8888888876433          157888888


Q ss_pred             hhhcccccccccCcccchhhhccc
Q 020914          252 VWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       252 ~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      +...++.++.-.|+..++...+++
T Consensus       418 ~~~l~a~~~~~~gdl~~Ae~~le~  441 (822)
T PRK14574        418 GQTLLVQSLVALNDLPTAQKKLED  441 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            888889989999999888777765

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.55  E-value=4.7e-13  Score=102.23  Aligned_cols=124  Identities=35%  Similarity=0.602  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   79 (320)
                      ..+..+...|+.++..|+|++|..-|..||++.|..     ..+|.++|.++.++++++.|+..+.++|+++|.+..++.
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~  172 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE  172 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence            346778899999999999999999999999999876     467999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      ++|.+|..+..|++|++.|++.++.+|...++...+.++--......++
T Consensus       173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk  221 (271)
T KOG4234|consen  173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK  221 (271)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999999999988888776655555444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.55  E-value=1.1e-13  Score=104.25  Aligned_cols=105  Identities=11%  Similarity=0.130  Sum_probs=101.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914           28 ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ  107 (320)
Q Consensus        28 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  107 (320)
                      +.|++++..+|++..+.+.+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..|+++++.+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914          108 SAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       108 ~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      ++..+..+|.++...|++++|....
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~  108 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKAL  108 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999997764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.54  E-value=3.9e-14  Score=116.59  Aligned_cols=226  Identities=16%  Similarity=0.169  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 020914           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME   89 (320)
Q Consensus        10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~   89 (320)
                      +..+|+.|+.+|+|++||.||.+++..+|.++..+.++|.+|+++..+..|...++.|+.++..+..+|.++|.+-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHH
Q 020914           90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVV  169 (320)
Q Consensus        90 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  169 (320)
                      ...+|.+.++.+|++.|++.+....++.+..    ..++.-........  .+........+      .....|....-.
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I~~KsT~G~--~~A~Q~~~Q~l------~~K~~G~~Fsk~  247 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKIATKSTPGF--TPARQGMIQIL------PIKKPGYKFSKK  247 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhHHhhcCCCC--Cccccchhhhc------cccCcchhhhhh
Confidence            9999999999999999998877766655432    22221110000000  00000000000      011122222333


Q ss_pred             HHHHHHHHhHhhccc---------cChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHH
Q 020914          170 ETMETAVKSWHETSK---------VDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSA  237 (320)
Q Consensus       170 ~~~~~a~~~~~~~~~---------~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~a  237 (320)
                      +.++.++.++.....         ++...|....+++.++....+++..+|.+.-... .|.+-..++..  +...|+.+
T Consensus       248 ~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~  327 (536)
T KOG4648|consen  248 AMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTA  327 (536)
T ss_pred             hccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhhe
Confidence            444445544443221         2222566666677777666666666666543332 55555555555  66677777


Q ss_pred             hchhCCCCCC
Q 020914          238 ACLVAPKSII  247 (320)
Q Consensus       238 l~~~~~~~~~  247 (320)
                      +.+.|.+..+
T Consensus       328 ~~~~P~~~~~  337 (536)
T KOG4648|consen  328 VKVAPAVETP  337 (536)
T ss_pred             eeeccccccc
Confidence            7664444433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.54  E-value=3e-13  Score=111.88  Aligned_cols=129  Identities=19%  Similarity=0.224  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHhcCC
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT---LFSNRAAAFLHL--------VKLNKALADAETTISLNP   72 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~--------g~~~~A~~~~~~al~l~p   72 (320)
                      |....+++.+|.+++..|++++|+..|+++++.+|+++.   +++.+|.++...        |++++|+..|++++..+|
T Consensus        67 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  146 (235)
T TIGR03302        67 PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP  146 (235)
T ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence            344578999999999999999999999999999998875   799999999987        899999999999999999


Q ss_pred             CCHHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           73 QWEKGY-----------------FRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        73 ~~~~~~-----------------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      ++..++                 ..+|.+|+..|++.+|+..|+++++..|+.   +.++..+|.++...|++++|....
T Consensus       147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~  226 (235)
T TIGR03302       147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA  226 (235)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            986542                 467899999999999999999999997765   589999999999999999997653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.54  E-value=3.4e-13  Score=99.03  Aligned_cols=107  Identities=19%  Similarity=0.245  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFR   80 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~   80 (320)
                      ++.++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|++++|+..|++++..+|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999876   5789999999999999999999999999999885   678999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (320)
Q Consensus        81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  113 (320)
                      +|.++..+|++++|+..++++++..|++..+..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            999999999999999999999999999877653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.53  E-value=9.1e-13  Score=124.10  Aligned_cols=230  Identities=10%  Similarity=0.039  Sum_probs=160.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-------
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-------   75 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-------   75 (320)
                      +|.+..+|..+...+...+++++|+...+.+++.+|+...+++.+|.++.+.+++++|...  .++.+.+.+.       
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH  104 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence            5788999999999999999999999999999999999999999999999999998877766  6777666655       


Q ss_pred             ------------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 020914           76 ------------KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQH  143 (320)
Q Consensus        76 ------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  143 (320)
                                  .+++.+|.||-++|+.++|...|+++|+++|+++.+..++|..+... +.++|+.+..  +++.....
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~--KAV~~~i~  181 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLK--KAIYRFIK  181 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHH--HHHHHHHh
Confidence                        89999999999999999999999999999999999999999999988 9999988753  22222111


Q ss_pred             HHHH--HHHHhhhhcchhhhhh-HHHHHHHHHHHHHHhHhhccc-cCh--hHHhhhcChhHHHHhhhhhhccccCcCCcc
Q 020914          144 LDEF--KSEMSEKYGAEECWKH-VFSFVVETMETAVKSWHETSK-VDA--KVYFLLDKEKTDTEKYAPIVNVDKAFESPH  217 (320)
Q Consensus       144 ~~~~--~~~~~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~-~~~--~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~  217 (320)
                      ....  ..+++..+.......+ .+...+......+. +.+... +.|  ..|....++++++..++.+++++|......
T Consensus       182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~  260 (906)
T PRK14720        182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE-FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR  260 (906)
T ss_pred             hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence            1100  0111111111111111 11111122221111 111111 111  177788899999999999999998865442


Q ss_pred             c-hhhHHHHhhHH-HHHHHHHHhch
Q 020914          218 T-HGSCFQFLRQY-ADDSFSSAACL  240 (320)
Q Consensus       218 ~-~g~~~~~~~~~-A~~~~~~al~~  240 (320)
                      . +..||.  +.| ....|+..+++
T Consensus       261 ~~l~~~y~--~kY~~~~~~ee~l~~  283 (906)
T PRK14720        261 EELIRFYK--EKYKDHSLLEDYLKM  283 (906)
T ss_pred             HHHHHHHH--HHccCcchHHHHHHH
Confidence            2 444444  666 54555555543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.52  E-value=1.3e-12  Score=116.09  Aligned_cols=224  Identities=8%  Similarity=-0.003  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLF-SNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      .+...+......|+++.|..++.++.+.+|+...+. ...+..+...|++++|+..+++.++.+|+++.++..++.+|..
T Consensus       120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~  199 (398)
T PRK10747        120 NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR  199 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            344446666999999999999999999999875443 4459999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHH------------------------------------------HHHHHHHHHHHHHH
Q 020914           88 MEQYDDALSAFQTALQYNPQSAEV------------------------------------------SRKIKRVSQLAKDK  125 (320)
Q Consensus        88 ~~~~~~A~~~~~~al~~~p~~~~~------------------------------------------~~~l~~~~~~~~~~  125 (320)
                      .|++++|++.+.+..+..+.++..                                          ...++..+...|+.
T Consensus       200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~  279 (398)
T PRK10747        200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH  279 (398)
T ss_pred             HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH
Confidence            999999998888888765554332                                          22223333333333


Q ss_pred             HHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---hhHHhhhcChhHHHHh
Q 020914          126 KRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---AKVYFLLDKEKTDTEK  202 (320)
Q Consensus       126 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---~~~~~~lg~~~~A~~~  202 (320)
                      ++|.....  .....     +....+...++.+  ..+....++...++..+..++...+.   ..++...+++.+|.+.
T Consensus       280 ~~A~~~L~--~~l~~-----~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~  350 (398)
T PRK10747        280 DTAQQIIL--DGLKR-----QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA  350 (398)
T ss_pred             HHHHHHHH--HHHhc-----CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            33322211  00000     0011111111111  11334444444444333333222111   1188888999999999


Q ss_pred             hhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchh
Q 020914          203 YAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLV  241 (320)
Q Consensus       203 ~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~  241 (320)
                      +++++++.|+......++.++...|+.  |..+|++++.+.
T Consensus       351 le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        351 FRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            999999999876545688899999888  999999998764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.52  E-value=1.7e-12  Score=107.11  Aligned_cols=214  Identities=15%  Similarity=0.185  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   88 (320)
                      .+......++..|++..||.+..+.|++.|-++..+..++.||...|+...||..++.+-++..++.+.++.++.+++..
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV  236 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence            45556677788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHH
Q 020914           89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV  168 (320)
Q Consensus        89 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  168 (320)
                      |+.+.++...+.+|+++|++..++-..-.+....+..+.+.+..+                            .+.+..+
T Consensus       237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie----------------------------~~~~t~c  288 (504)
T KOG0624|consen  237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIE----------------------------EKHWTEC  288 (504)
T ss_pred             hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHh----------------------------hhhHHHH
Confidence            999999999999999999998776554444333333333322110                            1111112


Q ss_pred             HHHHHHHHHhHhhccccCh-------hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHh
Q 020914          169 VETMETAVKSWHETSKVDA-------KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAA  238 (320)
Q Consensus       169 ~~~~~~a~~~~~~~~~~~~-------~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al  238 (320)
                      +...++.++.-+....+.-       .++..-|++.+|+.....+++++|+.....- ++.+|..-+.|  |+..|++|.
T Consensus       289 le~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~  368 (504)
T KOG0624|consen  289 LEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL  368 (504)
T ss_pred             HHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            2222222221111111111       1666666777777777777777776543332 55566666666  777777777


Q ss_pred             chhCCCCCCChhHhhhc
Q 020914          239 CLVAPKSIISYPQVWRG  255 (320)
Q Consensus       239 ~~~~~~~~~~~~~~~~~  255 (320)
                      +.     +++...+-.|
T Consensus       369 e~-----n~sn~~~reG  380 (504)
T KOG0624|consen  369 EL-----NESNTRAREG  380 (504)
T ss_pred             hc-----CcccHHHHHH
Confidence            66     4444444443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.52  E-value=8.9e-13  Score=121.59  Aligned_cols=178  Identities=13%  Similarity=0.118  Sum_probs=131.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH------------------------------------H
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSN------------------------------------R   47 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------------------------------l   47 (320)
                      |.-+.++..+|.+|..--+...|..+|.+|.++||.++.++-.                                    +
T Consensus       489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r  568 (1238)
T KOG1127|consen  489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR  568 (1238)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc
Confidence            3456788889999998889999999999999999886544444                                    5


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 020914           48 AAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR  127 (320)
Q Consensus        48 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  127 (320)
                      |..|...++..+|+..|+.++..+|++..+|..+|.+|...|++.-|++.|.+|..++|.+..+.+..+.+....|++.+
T Consensus       569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence            55555555666888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh-hHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhh
Q 020914          128 AQEVENIRSN-VDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE  181 (320)
Q Consensus       128 A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~  181 (320)
                      |.......-. ............+...+........|....+...++++++.+.-
T Consensus       649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~  703 (1238)
T KOG1127|consen  649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV  703 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            9876542111 11111111122333333444444555566666666666666554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.51  E-value=6.7e-13  Score=104.11  Aligned_cols=106  Identities=19%  Similarity=0.270  Sum_probs=95.1

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   79 (320)
                      .+..+..++.+|..+...|++++|+.+|++++...|+.   +.++.++|.++..+|++++|+..+++++..+|++..++.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            45778889999999999999999999999999887653   578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccC--------------HHHHHHHHHHHHhhCCCC
Q 020914           80 RKGCILEAMEQ--------------YDDALSAFQTALQYNPQS  108 (320)
Q Consensus        80 ~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~  108 (320)
                      .+|.++..+|+              +++|++++++++..+|++
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999888              567777777777777776

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.51  E-value=9.4e-14  Score=116.92  Aligned_cols=264  Identities=13%  Similarity=0.149  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CCCHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLN------PQWEK   76 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~~~   76 (320)
                      ...+...|.-+++.|++...+.+|+.|++...++    ..+|..+|.+|..+++|++|+++-..-|.+.      -..++
T Consensus        17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK   96 (639)
T KOG1130|consen   17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK   96 (639)
T ss_pred             HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence            3456677889999999999999999999998776    4678999999999999999999876554432      24567


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHH--------------------HHHHH
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQ------SAEVSRKIKRVSQLAKDK--------------------KRAQE  130 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~--------------------~~A~~  130 (320)
                      +--++|+++.-+|.|++|+.+..+-|.+...      ...+++++|.+|...|+-                    +.|.+
T Consensus        97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~  176 (639)
T KOG1130|consen   97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK  176 (639)
T ss_pred             ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence            7889999999999999999999998887543      245889999998776642                    11111


Q ss_pred             HHHHhhhhHHHHhHHH--HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHh----h-----ccccChhHHhhhcChhHH
Q 020914          131 VENIRSNVDMVQHLDE--FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWH----E-----TSKVDAKVYFLLDKEKTD  199 (320)
Q Consensus       131 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~----~-----~~~~~~~~~~~lg~~~~A  199 (320)
                      +  +..++.....+..  .....+..+|+.++-.|++..++...+.-++.-.    +     +..-..+++..+|+++.|
T Consensus       177 f--y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A  254 (639)
T KOG1130|consen  177 F--YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELA  254 (639)
T ss_pred             H--HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhH
Confidence            1  1222222222221  1223333444545545544444433332221111    1     111111289999999999


Q ss_pred             HHhhhhhhccc----cCc---CCccchhhHHHHhhHH--HHHHHHHHhchhCCC-CCCChhHhhhcccccccccCcccch
Q 020914          200 TEKYAPIVNVD----KAF---ESPHTHGSCFQFLRQY--ADDSFSSAACLVAPK-SIISYPQVWRGQGLRKWRHSQQDGF  269 (320)
Q Consensus       200 ~~~~~~a~~~~----~~~---~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~  269 (320)
                      +++|+..+.+.    ...   ...+.+|+.|..++.|  |+.++.+-+.+...- +...-..+++.+|+++-.+|....+
T Consensus       255 ~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA  334 (639)
T KOG1130|consen  255 IEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA  334 (639)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence            99998877543    222   3345589999999999  999999988764322 2233466788888888888877766


Q ss_pred             hhh
Q 020914          270 FVQ  272 (320)
Q Consensus       270 ~~~  272 (320)
                      +..
T Consensus       335 l~f  337 (639)
T KOG1130|consen  335 LYF  337 (639)
T ss_pred             HHH
Confidence            543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.51  E-value=1e-13  Score=91.35  Aligned_cols=67  Identities=22%  Similarity=0.466  Sum_probs=39.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCC
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME-QYDDALSAFQTALQYNP  106 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p  106 (320)
                      ++.+|..+|.++...|++++|+..|+++++++|+++.+|+++|.++..+| ++++|+++|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34555556666666666666666666666666665666666666666655 45666666666665555

...

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.50  E-value=6.3e-13  Score=106.04  Aligned_cols=129  Identities=14%  Similarity=0.219  Sum_probs=122.0

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      +|.+... ......+...|+-+.+.....++...+|.+..++...|......|++.+|+..++++..+.|+++++|..+|
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg  141 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG  141 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence            4666677 888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      -+|.+.|++++|...|.+++++.|.++.+..++|..+...|+++.|..+.
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ll  191 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLL  191 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999997764

>PRK15331 chaperone protein SicA; Provisional

Probab=99.49  E-value=1.4e-12  Score=97.85  Aligned_cols=110  Identities=16%  Similarity=0.106  Sum_probs=102.2

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      +++.-+..+..|.-++..|++++|...|+-....+|.+++.|..+|.|+..+++|++|+..|..+..++++++...+..|
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  113 (320)
                      .||..+|+.+.|+.+|+.++. .|.+..+..
T Consensus       113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~  142 (165)
T PRK15331        113 QCQLLMRKAAKARQCFELVNE-RTEDESLRA  142 (165)
T ss_pred             HHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence            999999999999999999999 566555443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.49  E-value=9.7e-14  Score=91.45  Aligned_cols=67  Identities=27%  Similarity=0.535  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCC
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNP   72 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p   72 (320)
                      ++..|..+|.+++..|+|++|+.+|+++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57899999999999999999999999999999999999999999999999 79999999999999998

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.49  E-value=8e-13  Score=92.28  Aligned_cols=99  Identities=34%  Similarity=0.626  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   88 (320)
                      .++.+|..++..|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCC
Q 020914           89 EQYDDALSAFQTALQYNPQ  107 (320)
Q Consensus        89 ~~~~~A~~~~~~al~~~p~  107 (320)
                      |++++|...+.++++.+|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999998874

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2.3e-13  Score=114.51  Aligned_cols=237  Identities=14%  Similarity=0.134  Sum_probs=173.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------------
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI--------------   68 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------------   68 (320)
                      -|+++..|.+++-+++..|+|++|...+++.++++|..+..+...+.|+..+++..+|...++..-              
T Consensus        79 ~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~  158 (486)
T KOG0550|consen   79 CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKL  158 (486)
T ss_pred             CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcc
Confidence            477889999999999999999999999999999999998888888888888888877765554211              


Q ss_pred             -hc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH
Q 020914           69 -SL---NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL  144 (320)
Q Consensus        69 -~l---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  144 (320)
                       ..   .|-...+-+..+.|+..+|++++|...--..+++++.+.++....|.++....+.+.++..+.  +.+...+..
T Consensus       159 ~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~--qal~ldpdh  236 (486)
T KOG0550|consen  159 APSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQ--QALRLDPDH  236 (486)
T ss_pred             cccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHh--hhhccChhh
Confidence             00   133455667778888888999999888888888899988888888888887777777765532  222222211


Q ss_pred             HHHH-HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh--------------HHhhhcChhHHHHhhhhhhcc
Q 020914          145 DEFK-SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK--------------VYFLLDKEKTDTEKYAPIVNV  209 (320)
Q Consensus       145 ~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--------------~~~~lg~~~~A~~~~~~a~~~  209 (320)
                      .... .......-..+...|.-..-.+.+..|.++|..++.++|.              +...+|+..+|+...+.++.|
T Consensus       237 ~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i  316 (486)
T KOG0550|consen  237 QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI  316 (486)
T ss_pred             hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence            1110 0000011111222344444455666666666666666665              667889999999999999999


Q ss_pred             ccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchh
Q 020914          210 DKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLV  241 (320)
Q Consensus       210 ~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~  241 (320)
                      ++.+..... .|.|+..++++  |++.|++|++..
T Consensus       317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999865555 89999999999  999999999873

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.47  E-value=2.8e-12  Score=115.72  Aligned_cols=260  Identities=15%  Similarity=0.083  Sum_probs=180.2

Q ss_pred             HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CC
Q 020914            7 EMSLKDKGNEFFKA-----------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP-QW   74 (320)
Q Consensus         7 a~~~~~~g~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~   74 (320)
                      +..++.+|.+|-.+           ....++++.+++|++.+|+|+.+.+.++.-|..+++.+.|.+..++++++++ ++
T Consensus       433 ~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~  512 (799)
T KOG4162|consen  433 PRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDS  512 (799)
T ss_pred             hhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc
Confidence            45566667666432           2357899999999999999999999999999999999999999999999955 67


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 020914           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENI--------------------  134 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~--------------------  134 (320)
                      +.+|..++.++...+++.+|+.....++.-.|+|......-..+....++.+++......                    
T Consensus       513 ~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~  592 (799)
T KOG4162|consen  513 AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKL  592 (799)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhh
Confidence            999999999999999999999999999999998654433333333333333333322110                    


Q ss_pred             ---hh-----------hhHHHHhHHHH-----------------------------HHHHhhhhcchhhhhhHHHHHHHH
Q 020914          135 ---RS-----------NVDMVQHLDEF-----------------------------KSEMSEKYGAEECWKHVFSFVVET  171 (320)
Q Consensus       135 ---~~-----------~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~a~~~  171 (320)
                         ..           .+.....+...                             ...++...+..+...+.-+.+.. 
T Consensus       593 ~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~-  671 (799)
T KOG4162|consen  593 LRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARS-  671 (799)
T ss_pred             hhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHH-
Confidence               00           00000000000                             00011111111111112222222 


Q ss_pred             HHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHH--HHHH
Q 020914          172 METAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADD--SFSS  236 (320)
Q Consensus       172 ~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~--~~~~  236 (320)
                            +..++..+.|.          .+...|...+|.+.|..++.++|+.+.... +|.++...|.-  |..  ....
T Consensus       672 ------CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~d  745 (799)
T KOG4162|consen  672 ------CLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSD  745 (799)
T ss_pred             ------HHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence                  22233333332          566778999999999999999999866655 89999988875  666  8899


Q ss_pred             HhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914          237 AACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL  278 (320)
Q Consensus       237 al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  278 (320)
                      |+++     +|..+++|+++|.++..+|+.+.+-++|..+..
T Consensus       746 alr~-----dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  746 ALRL-----DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             HHhh-----CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            9999     888899999999999999999998877766444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.47  E-value=1.5e-11  Score=100.80  Aligned_cols=222  Identities=14%  Similarity=0.121  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHH
Q 020914           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-----EKGYFRKGCI   84 (320)
Q Consensus        10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-----~~~~~~lg~~   84 (320)
                      =+-.|.-++-.++.++|+..|...++.+|...+++..+|..|+..|..+.||..-+..++ .|+.     ..+...+|.-
T Consensus        38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence            355788888899999999999999999999999999999999999999999998766655 5654     4588999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhH
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV  164 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (320)
                      |+..|=++.|...|........--..+...|-.+|...++|++|++.-.....+.  ..  .    .....+..++....
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~--~q--~----~~~eIAqfyCELAq  188 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG--GQ--T----YRVEIAQFYCELAQ  188 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--Cc--c----chhHHHHHHHHHHH
Confidence            9999999999999999888766667899999999999999999987633111110  00  0    01112233333333


Q ss_pred             HHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCC--ccchhhHHHHhhHH--H
Q 020914          165 FSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES--PHTHGSCFQFLRQY--A  230 (320)
Q Consensus       165 ~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~--~~~~g~~~~~~~~~--A  230 (320)
                      -..+....++|.....+++..+|+          +....|++..|++.++.+++-+|.+..  ...+..||..+|+-  .
T Consensus       189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~  268 (389)
T COG2956         189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG  268 (389)
T ss_pred             HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            333444444444444444444444          777788888888888888888887732  23366777777776  6


Q ss_pred             HHHHHHHhch
Q 020914          231 DDSFSSAACL  240 (320)
Q Consensus       231 ~~~~~~al~~  240 (320)
                      +....++.+.
T Consensus       269 ~~fL~~~~~~  278 (389)
T COG2956         269 LNFLRRAMET  278 (389)
T ss_pred             HHHHHHHHHc
Confidence            6666666644

>TIGR00540 hemY_coli hemY protein

Probab=99.47  E-value=6.2e-12  Score=112.37  Aligned_cols=233  Identities=8%  Similarity=0.005  Sum_probs=153.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      |+....+...|.....+|+++.|..++.++.+..|+.. .+....+.++...|++++|...+++.++..|+++.++..++
T Consensus       115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~  194 (409)
T TIGR00540       115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAE  194 (409)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44456678889999999999999999999999988875 56666799999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHH------------------------------------------HHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSR------------------------------------------KIKRVSQ  120 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------------------------------------~l~~~~~  120 (320)
                      .++...|++++|++.+.+.++..+.++....                                          .++..+.
T Consensus       195 ~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~  274 (409)
T TIGR00540       195 EAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI  274 (409)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH
Confidence            9999999999999999998877544433221                                          1111111


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc--ccChh---HHhhhcC
Q 020914          121 LAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS--KVDAK---VYFLLDK  195 (320)
Q Consensus       121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~--~~~~~---~~~~lg~  195 (320)
                      ..|+.++|.+..  ...+...+............++.  ...++...+...++++.+..+...  .+.-.   ++...|+
T Consensus       275 ~~g~~~~A~~~l--~~~l~~~pd~~~~~~~~l~~~~~--l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~  350 (409)
T TIGR00540       275 DCDDHDSAQEII--FDGLKKLGDDRAISLPLCLPIPR--LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE  350 (409)
T ss_pred             HCCChHHHHHHH--HHHHhhCCCcccchhHHHHHhhh--cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc
Confidence            122222221111  00000000000000000000000  111223334444444443333222  11111   7889999


Q ss_pred             hhHHHHhhh--hhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhch
Q 020914          196 EKTDTEKYA--PIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACL  240 (320)
Q Consensus       196 ~~~A~~~~~--~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~  240 (320)
                      +++|.++++  .+++..|+......+|.++..+|+.  |.+.|++++..
T Consensus       351 ~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       351 FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999  6878888876655689999999998  99999999865

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.46  E-value=8.8e-12  Score=110.53  Aligned_cols=215  Identities=13%  Similarity=0.026  Sum_probs=166.4

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      -|.+.+.+--+|..+...|+-++|..+-..++..++.+...|.-+|.+++.-.+|++|+.+|+.|+.+.|+|...|.-++
T Consensus        37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDls  116 (700)
T KOG1156|consen   37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLS  116 (700)
T ss_pred             CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHhHHHHHHHHhhhhcchhh
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM--VQHLDEFKSEMSEKYGAEEC  160 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  160 (320)
                      .+..++++++-....=.+.+++.|.....|...+......|++..|..+.+.......  .........++.........
T Consensus       117 lLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~  196 (700)
T KOG1156|consen  117 LLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILI  196 (700)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999877442222111  11111111222222233333


Q ss_pred             hhhHHHHHHHHHHHHHHhHhhc---cccChhHHhhhcChhHHHHhhhhhhccccCcCCcc
Q 020914          161 WKHVFSFVVETMETAVKSWHET---SKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPH  217 (320)
Q Consensus       161 ~~~~~~~a~~~~~~a~~~~~~~---~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~  217 (320)
                      ..|..+.+++...+--....+.   ......++..+++.++|...|...+..+|+....+
T Consensus       197 E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy  256 (700)
T KOG1156|consen  197 EAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY  256 (700)
T ss_pred             HcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence            3343444444333222222221   12222389999999999999999999999875443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.45  E-value=4.1e-12  Score=99.34  Aligned_cols=106  Identities=17%  Similarity=0.171  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   80 (320)
                      ...+..++.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+..+++++.++|.....+..
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~  111 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN  111 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            3457788999999999999999999999999887653   4589999999999999999999999999999999988888


Q ss_pred             HHHHHH-------HccCHH-------HHHHHHHHHHhhCCCCH
Q 020914           81 KGCILE-------AMEQYD-------DALSAFQTALQYNPQSA  109 (320)
Q Consensus        81 lg~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~  109 (320)
                      +|.++.       .+|+++       +|+..|++++..+|.+.
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            888888       667766       55566666777777554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.45  E-value=4.8e-12  Score=94.55  Aligned_cols=100  Identities=12%  Similarity=0.077  Sum_probs=94.6

Q ss_pred             HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 020914           33 AIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (320)
Q Consensus        33 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  111 (320)
                      ...+. ++.-+..+.+|..+...|++++|...|+.+..++|.+...|+++|.|+..+|+|++|+..|.+++.++|+++.+
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34567 77889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 020914          112 SRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       112 ~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +.++|.++...|+.+.|.+..
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF  126 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKAL  126 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999997653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.44  E-value=7.6e-12  Score=107.90  Aligned_cols=128  Identities=15%  Similarity=0.154  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |....+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|++.+++++.++|+.+..++++|+
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      +|+..|++.+|+..++..+..+|+++..|..|++.+..+|+..++...
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A  430 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA  430 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence            999999999999999999999999999999999999999998888443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.44  E-value=5.5e-12  Score=111.94  Aligned_cols=232  Identities=14%  Similarity=0.014  Sum_probs=172.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      ..+.|+.-+.....+++.++|+..++++|+..|.....|..+|.++.++++.+.|...|...++..|+.+..|..++.+-
T Consensus       650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle  729 (913)
T KOG0495|consen  650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE  729 (913)
T ss_pred             cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence            35667777788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHH
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF  165 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (320)
                      ...|+.-.|...++++.-.||++...|...-++..+.|..+.|..+.  .+++...+....+..+.....+....     
T Consensus       730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm--akALQecp~sg~LWaEaI~le~~~~r-----  802 (913)
T KOG0495|consen  730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM--AKALQECPSSGLLWAEAIWLEPRPQR-----  802 (913)
T ss_pred             HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH--HHHHHhCCccchhHHHHHHhccCccc-----
Confidence            99999999999999999999999999999999999999999986652  33333333222222111111111000     


Q ss_pred             HHHHHHHHHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHH
Q 020914          166 SFVVETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFS  235 (320)
Q Consensus       166 ~~a~~~~~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~  235 (320)
                         ......|+...    .-+|.       .++...++++|.++|.++++++|+.-..|. .-.++...|.-  -.+.|.
T Consensus       803 ---kTks~DALkkc----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~  875 (913)
T KOG0495|consen  803 ---KTKSIDALKKC----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK  875 (913)
T ss_pred             ---chHHHHHHHhc----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence               11111122111    12222       788888999999999999999998654442 11222233322  566777


Q ss_pred             HHhchhCCCCCCChhHhhhcc
Q 020914          236 SAACLVAPKSIISYPQVWRGQ  256 (320)
Q Consensus       236 ~al~~~~~~~~~~~~~~~~~~  256 (320)
                      +....     .|.++..|...
T Consensus       876 ~c~~~-----EP~hG~~W~av  891 (913)
T KOG0495|consen  876 KCETA-----EPTHGELWQAV  891 (913)
T ss_pred             HHhcc-----CCCCCcHHHHH
Confidence            77766     78888888743

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.43  E-value=4.4e-11  Score=98.55  Aligned_cols=173  Identities=14%  Similarity=0.164  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL---FSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYF   79 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~   79 (320)
                      .+..++..|..++..|+|++|++.|++++...|..+.+   .+.+|.+|.+.+++++|+..+++.++++|++   +.+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            56779999999999999999999999999999988644   5999999999999999999999999999876   56899


Q ss_pred             HHHHHHHHccC------------------HHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020914           80 RKGCILEAMEQ------------------YDDALSAFQTALQYNPQSAEVS---RKIKRVSQLAKDKKRAQEVENIRSNV  138 (320)
Q Consensus        80 ~lg~~~~~~~~------------------~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~  138 (320)
                      .+|.++..+++                  ..+|+..|++.++..|++..+-   ..+..+...+...             
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~-------------  177 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY-------------  177 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH-------------
Confidence            99998755541                  3578899999999999886543   2222222211111             


Q ss_pred             HHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh------hHHhhhcChhHHHHhhh
Q 020914          139 DMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA------KVYFLLDKEKTDTEKYA  204 (320)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~------~~~~~lg~~~~A~~~~~  204 (320)
                                   ....+..+..+|.+.-|...++..++.|+.......      .+|..+|..++|.....
T Consensus       178 -------------e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        178 -------------ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             -------------HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence                         112345555566667788888888888876544322      27778888888766543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.43  E-value=4.7e-13  Score=91.77  Aligned_cols=82  Identities=23%  Similarity=0.398  Sum_probs=74.2

Q ss_pred             HcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 020914           19 KAGNYLKAAALYTQAIKQDPS--NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALS   96 (320)
Q Consensus        19 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~   96 (320)
                      .+|+|+.|+..|+++++.+|.  +...++.+|.||..+|+|++|+..+++ ++.+|.+...++.+|.|+..+|++++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            468999999999999999995  467788899999999999999999999 88999999999999999999999999999


Q ss_pred             HHHHH
Q 020914           97 AFQTA  101 (320)
Q Consensus        97 ~~~~a  101 (320)
                      +|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.41  E-value=1.2e-11  Score=96.73  Aligned_cols=139  Identities=11%  Similarity=0.109  Sum_probs=110.4

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCH
Q 020914           17 FFKAGNYLKAAALYTQAIKQDPSN--PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQY   91 (320)
Q Consensus        17 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~   91 (320)
                      ++-...|..+...+...++.++..  +..++.+|.++...|++++|+..|++++.+.|+.   +.+|.++|.++..+|++
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~   88 (168)
T CHL00033          9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH   88 (168)
T ss_pred             cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence            444555777777776666666665  6778999999999999999999999999997763   46899999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHH
Q 020914           92 DDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVET  171 (320)
Q Consensus        92 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  171 (320)
                      ++|+..|++++.++|.....+..+|.++...|+..                                 ...|.+..+...
T Consensus        89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~---------------------------------~~~g~~~~A~~~  135 (168)
T CHL00033         89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQA---------------------------------IEQGDSEIAEAW  135 (168)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHH---------------------------------HHcccHHHHHHH
Confidence            99999999999999999999999998887555322                                 124445556666


Q ss_pred             HHHHHHhHhhccccChh
Q 020914          172 METAVKSWHETSKVDAK  188 (320)
Q Consensus       172 ~~~a~~~~~~~~~~~~~  188 (320)
                      +++++..|.++....|.
T Consensus       136 ~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        136 FDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHHHHHHHHHHHhCcc
Confidence            77777777777666663

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.40  E-value=7e-11  Score=95.08  Aligned_cols=168  Identities=15%  Similarity=0.220  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGY   78 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~   78 (320)
                      ..+..++..|..++..|+|.+|+..|++.+...|..   +.+.+.+|.++...|++++|+..+++.++..|++   +.++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            467899999999999999999999999999998876   6889999999999999999999999999999986   4689


Q ss_pred             HHHHHHHHHcc-----------CHHHHHHHHHHHHhhCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHhH
Q 020914           79 FRKGCILEAME-----------QYDDALSAFQTALQYNPQSAEVSRK---IKRVSQLAKDKKRAQEVENIRSNVDMVQHL  144 (320)
Q Consensus        79 ~~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  144 (320)
                      +.+|.+++.+.           ...+|+..|+..++..|++..+-..   +..+...+..                    
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~--------------------  142 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAE--------------------  142 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHH--------------------
Confidence            99999987654           3458999999999999998655432   2222111111                    


Q ss_pred             HHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh------hHHhhhcChhH
Q 020914          145 DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA------KVYFLLDKEKT  198 (320)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~------~~~~~lg~~~~  198 (320)
                            -....+..+..+|.+.-|...++..++.|+.......      .+|..+|....
T Consensus       143 ------~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~  196 (203)
T PF13525_consen  143 ------HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA  196 (203)
T ss_dssp             ------HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             ------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence                  1112355666677777777888877777776443322      26666666553

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.39  E-value=1e-12  Score=110.78  Aligned_cols=261  Identities=12%  Similarity=0.086  Sum_probs=176.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CCH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP------QWE   75 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p------~~~   75 (320)
                      ..+.++|+.|+..++|++|+++-..-|.+      .-..+.+.-++|.++..+|.|++|+.++.+-|.+..      ...
T Consensus        56 AIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~  135 (639)
T KOG1130|consen   56 AIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLES  135 (639)
T ss_pred             HHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhh
Confidence            35778999999999999999986655433      122356778999999999999999999988877643      246


Q ss_pred             HHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q 020914           76 KGYFRKGCILEAMEQ--------------------YDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQ  129 (320)
Q Consensus        76 ~~~~~lg~~~~~~~~--------------------~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~  129 (320)
                      .++|++|.+|...|+                    ++.|++.|..-|++....      ..++-+||..+..+|+++.|+
T Consensus       136 RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai  215 (639)
T KOG1130|consen  136 RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAI  215 (639)
T ss_pred             HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHH
Confidence            799999999998764                    334555555555553332      236778888999999999998


Q ss_pred             HHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---------hHHhhhcChhHHH
Q 020914          130 EVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---------KVYFLLDKEKTDT  200 (320)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---------~~~~~lg~~~~A~  200 (320)
                      ..-+.+..+.....-..........+|+++...|.+..|.+.|..++..-.+...-..         +.|..+.++++||
T Consensus       216 ~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI  295 (639)
T KOG1130|consen  216 HFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAI  295 (639)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHH
Confidence            8755444333332223334456677888888888877777777765433222111111         1777788899999


Q ss_pred             HhhhhhhccccCc-------CCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCC-hhHhhhcccccccccCcccc
Q 020914          201 EKYAPIVNVDKAF-------ESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIIS-YPQVWRGQGLRKWRHSQQDG  268 (320)
Q Consensus       201 ~~~~~a~~~~~~~-------~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~  268 (320)
                      .++.+-+.|....       ...|.+|..|..++..  |+..-++.+.+.....++. -..+-.|+...-..+|+.+.
T Consensus       296 ~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  296 TYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence            9999888776443       3356688888888876  6666666665543333333 23445555555566666554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.38  E-value=2.5e-12  Score=83.55  Aligned_cols=64  Identities=25%  Similarity=0.438  Sum_probs=40.1

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914           46 NRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        46 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  109 (320)
                      .+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4566666666666666666666666666666666666666666666666666666666666553

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=1.4e-10  Score=92.17  Aligned_cols=121  Identities=14%  Similarity=0.135  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |.+.+.....|..+-..|++++|+++|+..++-+|.+...+-..-.+...+|+.-+||+.+...++.++++.++|..++.
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae  162 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE  162 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            33444444555555555666666666666666666555555555555555555556666666666666666666666666


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  124 (320)
                      +|...|+|++|.-+++..+-+.|.++-.+..++.++..+|-
T Consensus       163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            66666666666666666666666666555555555554443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2.7e-11  Score=102.34  Aligned_cols=257  Identities=9%  Similarity=0.005  Sum_probs=182.6

Q ss_pred             HHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH--------------
Q 020914           14 GNEFFKAGN--YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG--------------   77 (320)
Q Consensus        14 g~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~--------------   77 (320)
                      +......++  +.-+..++-.-...-|++...+..+|.|+...|++.+|+.-|+++..+||.+..+              
T Consensus       203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~  282 (564)
T KOG1174|consen  203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGC  282 (564)
T ss_pred             HHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCH
Confidence            334444444  4455556666677889999999999999999999999999999999999987654              


Q ss_pred             --------------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020914           78 --------------------YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN  137 (320)
Q Consensus        78 --------------------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  137 (320)
                                          |+.-|.+++..+++..|+..-+|++..+|.+.+++..-|.++...++.++|.-.+     
T Consensus       283 e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaF-----  357 (564)
T KOG1174|consen  283 EQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAF-----  357 (564)
T ss_pred             hhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHH-----
Confidence                                4444555666788889999999999999999999999999999999999885332     


Q ss_pred             hHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc---ccCh-h-HHhhhcChhHHHHhhhhhhccccC
Q 020914          138 VDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS---KVDA-K-VYFLLDKEKTDTEKYAPIVNVDKA  212 (320)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~---~~~~-~-~~~~lg~~~~A~~~~~~a~~~~~~  212 (320)
                       ..+..+.+.+.+++..+-..|...+.+.+|.-.-..++..+....   ++-. . ++..----++|...+++++.+.|.
T Consensus       358 -R~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~  436 (564)
T KOG1174|consen  358 -RTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI  436 (564)
T ss_pred             -HHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc
Confidence             333344444555555555556666666666666665555554322   1111 1 122222357899999999999998


Q ss_pred             cCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccccccc
Q 020914          213 FESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLW  282 (320)
Q Consensus       213 ~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  282 (320)
                      +...-. .+.....-|++  ++...++++...++      .....-+|.++...+.++++++.|..++..+|.
T Consensus       437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~  503 (564)
T KOG1174|consen  437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK  503 (564)
T ss_pred             cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence            754433 55566666777  99999999965222      233556678888888888888888765554443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.8e-11  Score=100.28  Aligned_cols=112  Identities=18%  Similarity=0.186  Sum_probs=98.5

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCCCHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK---LNKALADAETTISLNPQWEKGY   78 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~   78 (320)
                      .+|++++.|..+|.+|+.+|++..|...|.+|+++.|++++.+..+|.++..+.+   -.++...+++++.+||.++.+.
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral  230 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL  230 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence            4788999999999999999999999999999999999999999999998887754   4688899999999999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914           79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (320)
Q Consensus        79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  113 (320)
                      +.+|..++..|+|.+|+..+++.++..|.+..-..
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~  265 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS  265 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence            99999999999999999999999998887765443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.36  E-value=3.6e-11  Score=99.73  Aligned_cols=108  Identities=12%  Similarity=0.123  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHH
Q 020914            6 EEMSLKDKGNEF-FKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGY   78 (320)
Q Consensus         6 ~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~   78 (320)
                      +...++..|..+ +..|+|++|+..|++.+...|++   +.+++.+|.+|+..|++++|+..|+++++..|+   .++++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            357788888887 66899999999999999999998   589999999999999999999999999999887   57899


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914           79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (320)
Q Consensus        79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  113 (320)
                      +.+|.++..+|++++|+..|+++++..|+...+..
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~  255 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ  255 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            99999999999999999999999999999886543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.36  E-value=2.9e-11  Score=106.37  Aligned_cols=166  Identities=17%  Similarity=0.079  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----hcCCCCHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI----SLNPQWEKGYFRKG   82 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~l~p~~~~~~~~lg   82 (320)
                      .+..+..|..+...|++++|+..++++++.+|++..++.. +..+..+|.+..+.....+++    ..+|....++..+|
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a  121 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA  121 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence            3455566777777777777777777777777777666554 444444444333333333333    45566666667777


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhh
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK  162 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (320)
                      .++...|++++|+..++++++++|+++.++..+|.++...|++++|+....  ..+...+.........+..++..+...
T Consensus       122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~--~~l~~~~~~~~~~~~~~~~la~~~~~~  199 (355)
T cd05804         122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFME--SWRDTWDCSSMLRGHNWWHLALFYLER  199 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH--hhhhccCCCcchhHHHHHHHHHHHHHC
Confidence            788888888888888888888888888888888888888888888876642  222211111111122233445555555


Q ss_pred             hHHHHHHHHHHHH
Q 020914          163 HVFSFVVETMETA  175 (320)
Q Consensus       163 ~~~~~a~~~~~~a  175 (320)
                      |.++.+...++++
T Consensus       200 G~~~~A~~~~~~~  212 (355)
T cd05804         200 GDYEAALAIYDTH  212 (355)
T ss_pred             CCHHHHHHHHHHH
Confidence            5555555555554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.36  E-value=1.5e-11  Score=96.45  Aligned_cols=118  Identities=14%  Similarity=0.199  Sum_probs=98.0

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914           38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (320)
Q Consensus        38 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  114 (320)
                      |..+.+++.+|.++...|++++|+.+|++++++.|+.   +.+++.+|.++..+|++++|+..|++++...|.+..++..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3557789999999999999999999999999987764   5799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh
Q 020914          115 IKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (320)
Q Consensus       115 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~  188 (320)
                      +|.++...|+...+.                                 +....++..+++|.+.+.++...+|.
T Consensus       112 lg~~~~~~g~~~~a~---------------------------------~~~~~A~~~~~~A~~~~~~a~~~~p~  152 (172)
T PRK02603        112 IAVIYHKRGEKAEEA---------------------------------GDQDEAEALFDKAAEYWKQAIRLAPN  152 (172)
T ss_pred             HHHHHHHcCChHhHh---------------------------------hCHHHHHHHHHHHHHHHHHHHhhCch
Confidence            998887776665552                                 22334556667777777777776665

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.36  E-value=4.1e-12  Score=82.52  Aligned_cols=65  Identities=28%  Similarity=0.434  Sum_probs=61.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q 020914           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE   75 (320)
Q Consensus        11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   75 (320)
                      +.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999875

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.35  E-value=4.7e-11  Score=111.65  Aligned_cols=143  Identities=6%  Similarity=-0.058  Sum_probs=124.9

Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914           35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (320)
Q Consensus        35 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  114 (320)
                      .-.|+++.++.++|.+...+|.+++|...++.++++.|++..++..++.++.+++++++|+..+++++..+|+++.++..
T Consensus        80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            44788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc
Q 020914          115 IKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS  183 (320)
Q Consensus       115 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~  183 (320)
                      +|.++..+|++++|++.+.  ..+.    ..+....+...+|..+...|..+.|...|++|+.......
T Consensus       160 ~a~~l~~~g~~~~A~~~y~--~~~~----~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFE--RLSR----QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHHHHHhcchHHHHHHHH--HHHh----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            9999999999999988864  2222    1223455666778888888888888888888887766544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.34  E-value=8.4e-12  Score=101.55  Aligned_cols=100  Identities=14%  Similarity=0.242  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  121 (320)
                      +-+-.-|.-....++|++|+..|.+||+++|.++-.|.+++.+|.++|.++.|++.++.||.++|.+..+|..||.++..
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            45666788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHh
Q 020914          122 AKDKKRAQEVENIRSNVDMVQH  143 (320)
Q Consensus       122 ~~~~~~A~~~~~~~~~~~~~~~  143 (320)
                      +|++.+|++.+  ++.++..+.
T Consensus       162 ~gk~~~A~~ay--kKaLeldP~  181 (304)
T KOG0553|consen  162 LGKYEEAIEAY--KKALELDPD  181 (304)
T ss_pred             cCcHHHHHHHH--HhhhccCCC
Confidence            99999998773  455544433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=3.1e-10  Score=90.16  Aligned_cols=168  Identities=14%  Similarity=0.050  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 020914           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME   89 (320)
Q Consensus        10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~   89 (320)
                      +-....+.+..|+.+-|..|+++.-...|.+..+-...|..+...|+|++|+++|+..|+-||.+..++-..--+...+|
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G  134 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG  134 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC
Confidence            34455667788999999999999888889999999999999999999999999999999999999999999888999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHH
Q 020914           90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVV  169 (320)
Q Consensus        90 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  169 (320)
                      +.-+||+.+...++..+.+.++|..++.+|...|++.+|.=.+      +...-..|..+.....++++.+..|.    .
T Consensus       135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl------EE~ll~~P~n~l~f~rlae~~Yt~gg----~  204 (289)
T KOG3060|consen  135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL------EELLLIQPFNPLYFQRLAEVLYTQGG----A  204 (289)
T ss_pred             CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH------HHHHHcCCCcHHHHHHHHHHHHHHhh----H
Confidence            9999999999999999999999999999999999999994332      22222334444455555555554442    2


Q ss_pred             HHHHHHHHhHhhccccCh
Q 020914          170 ETMETAVKSWHETSKVDA  187 (320)
Q Consensus       170 ~~~~~a~~~~~~~~~~~~  187 (320)
                      ..++-+.+.|.+++++.|
T Consensus       205 eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  205 ENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHHHHHHhCh
Confidence            223333444444444444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=3.5e-10  Score=92.84  Aligned_cols=204  Identities=15%  Similarity=0.097  Sum_probs=128.0

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG   77 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   77 (320)
                      .|...++.+.+|+.+...|+.+.||..-+..++ .|+.     ..+...+|.-|...|-++.|...|...+....--..+
T Consensus        65 d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A  143 (389)
T COG2956          65 DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA  143 (389)
T ss_pred             CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH
Confidence            456667777777777777777777777655443 4443     3566777777777777777777776666544444566


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHh
Q 020914           78 YFRKGCILEAMEQYDDALSAFQTALQYNPQS-----AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMS  152 (320)
Q Consensus        78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  152 (320)
                      .-.+-.+|....++++|++.-++.+++.|..     +..+..++.......+.++|....      ..+...++......
T Consensus       144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l------~kAlqa~~~cvRAs  217 (389)
T COG2956         144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL------KKALQADKKCVRAS  217 (389)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH------HHHHhhCccceehh
Confidence            6777777777777777777777777776654     334556666666666666664432      22222333344445


Q ss_pred             hhhcchhhhhhHHHHHHHHHHHHHHhHhhccc----cChhHHhhhcChhHHHHhhhhhhccccCc
Q 020914          153 EKYGAEECWKHVFSFVVETMETAVKSWHETSK----VDAKVYFLLDKEKTDTEKYAPIVNVDKAF  213 (320)
Q Consensus       153 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~----~~~~~~~~lg~~~~A~~~~~~a~~~~~~~  213 (320)
                      ..+|++....|.+..+.+.++.+.+.-+..+.    ....+|..+|+..+.+..+.++.+..+..
T Consensus       218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            55677777777777777777666654443221    11227778888888888877777766543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.32  E-value=6.4e-11  Score=104.16  Aligned_cols=203  Identities=15%  Similarity=0.014  Sum_probs=155.4

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY   78 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   78 (320)
                      ..|+.+.++..+|..+...|+.+.|...+.++....|.+   .+.....|.++...|++++|+..++++++.+|++..++
T Consensus         1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~   80 (355)
T cd05804           1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL   80 (355)
T ss_pred             CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence            368999999999999999999999999999999887755   56788889999999999999999999999999999888


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHH----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhh
Q 020914           79 FRKGCILEAMEQYDDALSAFQTAL----QYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEK  154 (320)
Q Consensus        79 ~~lg~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (320)
                      .. +..+..+|++..+.....+++    ..+|....+...+|.++...|++++|+...  +..+...    +........
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~--~~al~~~----p~~~~~~~~  153 (355)
T cd05804          81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAA--RRALELN----PDDAWAVHA  153 (355)
T ss_pred             HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHH--HHHHhhC----CCCcHHHHH
Confidence            76 666666665554444444444    567777788888999999999999997764  2333322    222445556


Q ss_pred             hcchhhhhhHHHHHHHHHHHHHHhHhhcccc-------ChhHHhhhcChhHHHHhhhhhhcccc
Q 020914          155 YGAEECWKHVFSFVVETMETAVKSWHETSKV-------DAKVYFLLDKEKTDTEKYAPIVNVDK  211 (320)
Q Consensus       155 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-------~~~~~~~lg~~~~A~~~~~~a~~~~~  211 (320)
                      ++.++...|.++.+...+++++..++.....       ...++...|++++|+..|++++...|
T Consensus       154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            6777777777788888877777665432111       11277888999999999999977665

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.31  E-value=3.9e-10  Score=101.95  Aligned_cols=197  Identities=15%  Similarity=0.181  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhcCC--------
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-----KLNKALADAETTISLNP--------   72 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~l~p--------   72 (320)
                      ....+-.+|.+++..|++++|...|...|..||++...+..+..+.....     +.+.-.+.|++.-...|        
T Consensus        37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl  116 (517)
T PF12569_consen   37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL  116 (517)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHh
Confidence            34456677888888888888888888888888888777777777762222     12222222222211110        


Q ss_pred             -----------------------------------------------------------------------CC----HHH
Q 020914           73 -----------------------------------------------------------------------QW----EKG   77 (320)
Q Consensus        73 -----------------------------------------------------------------------~~----~~~   77 (320)
                                                                                             +.    ..+
T Consensus       117 ~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~  196 (517)
T PF12569_consen  117 PLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWT  196 (517)
T ss_pred             hcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHH
Confidence                                                                                   00    134


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcc
Q 020914           78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA  157 (320)
Q Consensus        78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (320)
                      ++.+|+.|-..|++++|+++.++|+...|+.++.+...|.++...|++.+|.+.......++.....      +......
T Consensus       197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy------iNsK~aK  270 (517)
T PF12569_consen  197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY------INSKCAK  270 (517)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH------HHHHHHH
Confidence            6888999999999999999999999999999999999999999999999997665444444433222      2222223


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHhhccccChh-----------------HHhhhcChhHHHHhhhhhhccccCc
Q 020914          158 EECWKHVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (320)
Q Consensus       158 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----------------~~~~lg~~~~A~~~~~~a~~~~~~~  213 (320)
                      .....|.++.|.....    .|.+... +|.                 +|...|++..|+..|..+.++-...
T Consensus       271 y~LRa~~~e~A~~~~~----~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~  338 (517)
T PF12569_consen  271 YLLRAGRIEEAEKTAS----LFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF  338 (517)
T ss_pred             HHHHCCCHHHHHHHHH----hhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3333344444444332    2333221 221                 8889999999999998888764433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.28  E-value=1.3e-11  Score=114.05  Aligned_cols=197  Identities=11%  Similarity=0.047  Sum_probs=145.7

Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           55 VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENI  134 (320)
Q Consensus        55 g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  134 (320)
                      .+...|+..|-++++++|..+.+|-.+|.+|...-+...|.++|++|.+++|++..++...+..+.....++.|.++...
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999766210


Q ss_pred             hhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcC
Q 020914          135 RSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFE  214 (320)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~  214 (320)
                        ..+.++                             ...+...|....    -.|..-++...|+..++.++.++|.+.
T Consensus       552 --~~qka~-----------------------------a~~~k~nW~~rG----~yyLea~n~h~aV~~fQsALR~dPkD~  596 (1238)
T KOG1127|consen  552 --AAQKAP-----------------------------AFACKENWVQRG----PYYLEAHNLHGAVCEFQSALRTDPKDY  596 (1238)
T ss_pred             --Hhhhch-----------------------------HHHHHhhhhhcc----ccccCccchhhHHHHHHHHhcCCchhH
Confidence              000000                             001112222211    155577888889999999999999888


Q ss_pred             Cccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccccccccccccccccccc
Q 020914          215 SPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKG  291 (320)
Q Consensus       215 ~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (320)
                      ..|. +|.+|...|+|  |++.|.||..+     +|..--+-+-.+.....+|+|+++...++.-+.....+.|..++.+
T Consensus       597 n~W~gLGeAY~~sGry~~AlKvF~kAs~L-----rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLa  671 (1238)
T KOG1127|consen  597 NLWLGLGEAYPESGRYSHALKVFTKASLL-----RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLA  671 (1238)
T ss_pred             HHHHHHHHHHHhcCceehHHHhhhhhHhc-----CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            7887 89999999998  99999999988     6655333333455567788888887766553333333344444433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.27  E-value=3.4e-10  Score=87.89  Aligned_cols=110  Identities=17%  Similarity=0.222  Sum_probs=105.0

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      +....+.-++.+|..|-..|=+.-|.-.|.+++.+.|.-+.++..+|.-+...|+++.|.+.|+..+++||.+.-++.++
T Consensus        60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR  139 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  139 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  111 (320)
                      |..+.--|+|+-|.+.+.+-..-+|++|--
T Consensus       140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR  169 (297)
T COG4785         140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFR  169 (297)
T ss_pred             ceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence            999999999999999999999999999753

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.24  E-value=1.9e-10  Score=104.10  Aligned_cols=126  Identities=19%  Similarity=0.136  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      ..|...|..+...++-++|..|+.++-.++|..+..|+..|.++...|++.+|.+.|..|+.++|+++.+...+|.++..
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle  730 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE  730 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           88 MEQYDDALS--AFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        88 ~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                      .|+..-|..  .+..+++++|.++++|+.+|.+....|+.++|-+.+.
T Consensus       731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~  778 (799)
T KOG4162|consen  731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ  778 (799)
T ss_pred             hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence            999888888  9999999999999999999999999999999966643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.22  E-value=6.6e-11  Score=106.44  Aligned_cols=129  Identities=13%  Similarity=0.119  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      .++.+...+|...+..++|+++..+++.+++++|-....|+.+|.|..++++++.|..+|.+++.++|++..+|.+++.+
T Consensus       483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a  562 (777)
T KOG1128|consen  483 ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA  562 (777)
T ss_pred             hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence            45566777777788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                      |..+++-.+|...+++|++.+-++...|.+...+....|.+++|+..+.
T Consensus       563 yi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~  611 (777)
T KOG1128|consen  563 YIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH  611 (777)
T ss_pred             HHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999987754

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.21  E-value=4.9e-10  Score=77.86  Aligned_cols=90  Identities=19%  Similarity=0.307  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (320)
Q Consensus        43 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  122 (320)
                      +++.+|.++...|++++|+..++++++..|++..+++.+|.++...+++++|++.|++++...|.+..++..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 020914          123 KDKKRAQEVE  132 (320)
Q Consensus       123 ~~~~~A~~~~  132 (320)
                      |+++.|....
T Consensus        82 ~~~~~a~~~~   91 (100)
T cd00189          82 GKYEEALEAY   91 (100)
T ss_pred             HhHHHHHHHH
Confidence            9999986653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.20  E-value=3.3e-10  Score=108.35  Aligned_cols=251  Identities=8%  Similarity=-0.091  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQWEKGYFRKGC   83 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~   83 (320)
                      +...|..+...|...|++++|+..|++..+.. ..+...+..+..++.+.|++++|.+.+..+++.. +.+..++..+..
T Consensus       289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~  368 (697)
T PLN03081        289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD  368 (697)
T ss_pred             ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence            34455666666666666666666666655432 1134556666666666666666666666666554 345556666666


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (320)
                      .|.+.|++++|.+.|++..+   .+..+|..+...+...|+.++|+++..........++     ...+..+-......|
T Consensus       369 ~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-----~~T~~~ll~a~~~~g  440 (697)
T PLN03081        369 LYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-----HVTFLAVLSACRYSG  440 (697)
T ss_pred             HHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHhcCC
Confidence            66677777777777766543   2455666677777777777777666432111111111     111222233334455


Q ss_pred             HHHHHHHHHHHHHHhHhhccccChh---------HHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHH
Q 020914          164 VFSFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADD  232 (320)
Q Consensus       164 ~~~~a~~~~~~a~~~~~~~~~~~~~---------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~  232 (320)
                      ..+.+...++...+.+    .+.|.         .+...|+.++|.+.++..- ..|+......+...+...+++  |..
T Consensus       441 ~~~~a~~~f~~m~~~~----g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p~~~~~~~Ll~a~~~~g~~~~a~~  515 (697)
T PLN03081        441 LSEQGWEIFQSMSENH----RIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKPTVNMWAALLTACRIHKNLELGRL  515 (697)
T ss_pred             cHHHHHHHHHHHHHhc----CCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence            5666666666544322    22232         6777888888888877642 334332211233344455555  888


Q ss_pred             HHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcc
Q 020914          233 SFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFE  274 (320)
Q Consensus       233 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  274 (320)
                      .+++.+.+     .|.....|..+.+.|.+.|+.+++..-++
T Consensus       516 ~~~~l~~~-----~p~~~~~y~~L~~~y~~~G~~~~A~~v~~  552 (697)
T PLN03081        516 AAEKLYGM-----GPEKLNNYVVLLNLYNSSGRQAEAAKVVE  552 (697)
T ss_pred             HHHHHhCC-----CCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence            88888877     44444557777788888898888765443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.20  E-value=1.1e-08  Score=86.52  Aligned_cols=263  Identities=10%  Similarity=-0.023  Sum_probs=188.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-WEKGYFRKGCIL   85 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~   85 (320)
                      +......|..-+..|+|.+|.....++-+..+.-.-++..-+.+-.++|+.+.|-.++.++-+..++ .-.....++.+.
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll  163 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL  163 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            4455667888889999999999999998888877888888999999999999999999999999554 466788899999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------HHH------------------
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV------DMV------------------  141 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~------------------  141 (320)
                      ...|+++.|.....++++..|.++.+......++...|.+.....+.......      +..                  
T Consensus       164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~  243 (400)
T COG3071         164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN  243 (400)
T ss_pred             HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999887664311100      000                  


Q ss_pred             ------------HhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhcc
Q 020914          142 ------------QHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNV  209 (320)
Q Consensus       142 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~  209 (320)
                                  +......+++...+..-....|..+.|.+..+++++.-.+.--...--....++...-++..++.+..
T Consensus       244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~  323 (400)
T COG3071         244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQ  323 (400)
T ss_pred             cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence                        00000112222223333344445555555555554322211100000223446777777888888888


Q ss_pred             ccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          210 DKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       210 ~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      .|+..+.+. +|..+...+.+  |...|+.|++..+.      ...|..+|.++-.+|+...+-...++
T Consensus       324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s------~~~~~~la~~~~~~g~~~~A~~~r~e  386 (400)
T COG3071         324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS------ASDYAELADALDQLGEPEEAEQVRRE  386 (400)
T ss_pred             CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC------hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence            888776665 99999999999  99999999976322      34477788888888888776544444

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.20  E-value=1.1e-09  Score=78.08  Aligned_cols=102  Identities=23%  Similarity=0.288  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKG   82 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg   82 (320)
                      ...+-..|..+...|+.+.|++.|.++|.+-|..+.+|.+++.++..+|+.++|++.+++++++.-+.    -.++.++|
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg  122 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG  122 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            45677789999999999999999999999999999999999999999999999999999999996543    36799999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQS  108 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~  108 (320)
                      .+|..+|+-+.|...|+.+-++....
T Consensus       123 ~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  123 LLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            99999999999999999998875443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.20  E-value=7.4e-10  Score=80.19  Aligned_cols=96  Identities=20%  Similarity=0.121  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGYFRK   81 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l   81 (320)
                      .++++.|..+-..|+.++|+..|++++......   ..++..+|.++..+|++++|+..+++++.-.|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578899999999999999999999999875544   578999999999999999999999999999888   78888889


Q ss_pred             HHHHHHccCHHHHHHHHHHHHh
Q 020914           82 GCILEAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~  103 (320)
                      +.++...|+.++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999887775

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.19  E-value=1.4e-09  Score=79.96  Aligned_cols=108  Identities=19%  Similarity=0.244  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGY   78 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~   78 (320)
                      ..+..++..|...+..|+|++|++.|+......|..   ..+...+|.+|+..+++++|+..+++-|+++|.++   -++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            346789999999999999999999999999887764   68999999999999999999999999999999874   589


Q ss_pred             HHHHHHHHHccC---------------HHHHHHHHHHHHhhCCCCHHHH
Q 020914           79 FRKGCILEAMEQ---------------YDDALSAFQTALQYNPQSAEVS  112 (320)
Q Consensus        79 ~~lg~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~  112 (320)
                      +.+|.+++.+..               ..+|...|++.++..|++..+-
T Consensus        88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~  136 (142)
T PF13512_consen   88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA  136 (142)
T ss_pred             HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            999999999877               8899999999999999987653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.19  E-value=2.6e-10  Score=99.61  Aligned_cols=89  Identities=12%  Similarity=0.142  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914           44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (320)
Q Consensus        44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  123 (320)
                      +...|...+..|+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..+++++.++|+++.++..+|.++...|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 020914          124 DKKRAQEVE  132 (320)
Q Consensus       124 ~~~~A~~~~  132 (320)
                      ++++|+..+
T Consensus        85 ~~~eA~~~~   93 (356)
T PLN03088         85 EYQTAKAAL   93 (356)
T ss_pred             CHHHHHHHH
Confidence            999997764

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.18  E-value=2.4e-09  Score=104.92  Aligned_cols=250  Identities=14%  Similarity=0.021  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCCHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTIS----LNPQWEKGYFR   80 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~   80 (320)
                      ...|..+...|.+.|++++|+..|.+..+.  .| +...|..+...|.+.|++++|.+.|++...    +.|+ ...|..
T Consensus       507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyna  584 (1060)
T PLN03218        507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGA  584 (1060)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHH
Confidence            344555555555666666666666555432  23 345555666666666666666666665543    2332 345555


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchh
Q 020914           81 KGCILEAMEQYDDALSAFQTALQYN-PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE  159 (320)
Q Consensus        81 lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (320)
                      +-.+|.+.|++++|.+.|+.+.+.+ +.+..+|..+...+...|++++|..++.........+.     ...+..+...+
T Consensus       585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-----~~TynsLI~a~  659 (1060)
T PLN03218        585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-----EVFFSALVDVA  659 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHH
Confidence            5556666666666666666666554 34455566666666666666666555332111100000     11222233334


Q ss_pred             hhhhHHHHHHHHHHHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhcc--ccCcCCccchhhHHHHhhHH-
Q 020914          160 CWKHVFSFVVETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNV--DKAFESPHTHGSCFQFLRQY-  229 (320)
Q Consensus       160 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~~--~~~~~~~~~~g~~~~~~~~~-  229 (320)
                      ...|.++.+...+++..+.   ....+..       +|...|+.++|.+.|+.+...  .|+......+-..|...+++ 
T Consensus       660 ~k~G~~eeA~~l~~eM~k~---G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e  736 (1060)
T PLN03218        660 GHAGDLDKAFEILQDARKQ---GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP  736 (1060)
T ss_pred             HhCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence            4444455555555443321   1111111       666667777777777666542  34333222244455555666 


Q ss_pred             -HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchh
Q 020914          230 -ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFF  270 (320)
Q Consensus       230 -A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  270 (320)
                       |++.|++........+    ..+|..+-..+.+.|+.+.+.
T Consensus       737 eAlelf~eM~~~Gi~Pd----~~Ty~sLL~a~~k~G~le~A~  774 (1060)
T PLN03218        737 KALEVLSEMKRLGLCPN----TITYSILLVASERKDDADVGL  774 (1060)
T ss_pred             HHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCCHHHHH
Confidence             7777766654321111    233444444555555555544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.17  E-value=1.3e-10  Score=76.08  Aligned_cols=66  Identities=21%  Similarity=0.241  Sum_probs=39.2

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914           18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus        18 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      +..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++..+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            445666666666666666666666666666666666666666666666666666665555554443

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.16  E-value=2.7e-10  Score=75.74  Aligned_cols=66  Identities=20%  Similarity=0.392  Sum_probs=40.2

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914           48 AAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (320)
Q Consensus        48 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  113 (320)
                      ..+|...+++++|+.++++++.++|+++..|..+|.++..+|++++|++.|+++++..|+++.+..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            345556666666666666666666666666666666666666666666666666666665555443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.16  E-value=9e-10  Score=83.77  Aligned_cols=127  Identities=22%  Similarity=0.183  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGY   78 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~   78 (320)
                      ..+...+......+..++...+...+++.+.-+|+.   ..+...+|.++...|++++|+..|+.++...|+.   +.+.
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            345667777778888999999999999999999988   5778889999999999999999999999987765   4688


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +++|.++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|...+
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y  141 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAY  141 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            8999999999999999999966 4445556778889999999999999998765

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.4e-10  Score=91.20  Aligned_cols=100  Identities=27%  Similarity=0.420  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      ..+..+...|+.++...+|..|+.+|.+||.++|..+..|.+++.|++++.+++.+.....++++++|+.+.+++.+|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhh
Q 020914           85 LEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~  104 (320)
                      ......|++|+..++++..+
T Consensus        88 ~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHhhccccHHHHHHHHHHHH
Confidence            99999999999999999766

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.15  E-value=1.9e-09  Score=98.14  Aligned_cols=128  Identities=16%  Similarity=0.169  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHhc--C
Q 020914            5 AEEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--------KLNKALADAETTISL--N   71 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~l--~   71 (320)
                      ..+..++.+|..++..++   +..|+.+|++|++++|+++.++-.++.++....        +..++....++++.+  +
T Consensus       337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~  416 (517)
T PRK10153        337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL  416 (517)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence            467788899999887765   889999999999999999999999999886652        345667777777764  7


Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           72 PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        72 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                      |..+.+|..+|..+...|++++|...+++|+.++| +..+|..+|.++...|+.++|++.+.
T Consensus       417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~  477 (517)
T PRK10153        417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS  477 (517)
T ss_pred             cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88889999999999999999999999999999999 58899999999999999999987753

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.15  E-value=3e-09  Score=104.21  Aligned_cols=252  Identities=10%  Similarity=-0.017  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDP-SNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRKGCI   84 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~   84 (320)
                      ..+..+-..+.+.|++++|...|+++.+... .+...|..+...|.+.|++++|+..|++..+.  .| +...|..+...
T Consensus       473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a  551 (1060)
T PLN03218        473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISA  551 (1060)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence            3444555556666666666666666655432 14566666666666666666666666666543  23 34556666666


Q ss_pred             HHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhh
Q 020914           85 LEAMEQYDDALSAFQTALQY----NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC  160 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (320)
                      |.+.|++++|.+.|++....    .| +..++..+...+...|++++|.+++.........     .....+..+...+.
T Consensus       552 ~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~-----p~~~tynsLI~ay~  625 (1060)
T PLN03218        552 CGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIK-----GTPEVYTIAVNSCS  625 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-----CChHHHHHHHHHHH
Confidence            66666666666666666542    23 2455555656666666666666554321111100     01123333444455


Q ss_pred             hhhHHHHHHHHHHHHHHhHhhccccChh---------HHhhhcChhHHHHhhhhhhccc--cCcCCccchhhHHHHhhHH
Q 020914          161 WKHVFSFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVD--KAFESPHTHGSCFQFLRQY  229 (320)
Q Consensus       161 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~---------~~~~lg~~~~A~~~~~~a~~~~--~~~~~~~~~g~~~~~~~~~  229 (320)
                      ..|.++.|...+++....   .  +.|+         .+...|+.++|.+.++.+.+.+  |+......+..+|...+++
T Consensus       626 k~G~~deAl~lf~eM~~~---G--v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~  700 (1060)
T PLN03218        626 QKGDWDFALSIYDDMKKK---G--VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW  700 (1060)
T ss_pred             hcCCHHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence            556666666666654321   1  2222         6777899999999999888754  4333333466677778887


Q ss_pred             --HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          230 --ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       230 --A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                        |++.|++.......   | ...+|..+...+.+.|+.++++.-+.+
T Consensus       701 eeA~~lf~eM~~~g~~---P-dvvtyN~LI~gy~k~G~~eeAlelf~e  744 (1060)
T PLN03218        701 KKALELYEDIKSIKLR---P-TVSTMNALITALCEGNQLPKALEVLSE  744 (1060)
T ss_pred             HHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence              99999988654222   2 256688888889999999888766554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.14  E-value=4.1e-09  Score=80.12  Aligned_cols=94  Identities=23%  Similarity=0.248  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      ..+.+.+|.+++..|++++|+..|++++...|+.   +.+...+|.++...|++++|+..++. +.-.+-.+.++..+|+
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd  126 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD  126 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence            3444455555555555555555555555444332   23444455555555555555555533 1222223344444555


Q ss_pred             HHHHccCHHHHHHHHHHH
Q 020914           84 ILEAMEQYDDALSAFQTA  101 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~a  101 (320)
                      +|...|++++|+..|++|
T Consensus       127 i~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  127 IYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHCCCHHHHHHHHHHh
Confidence            555555555555555544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.14  E-value=9.9e-10  Score=99.05  Aligned_cols=124  Identities=21%  Similarity=0.250  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH----------------------------HHHHHccCHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRA----------------------------AAFLHLVKLN   58 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----------------------------~~~~~~g~~~   58 (320)
                      ...|-....+|...|+..+|.....+-++ .|.++..|..+|                            ......++|+
T Consensus       424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs  502 (777)
T KOG1128|consen  424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS  502 (777)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence            44566677778888888888888777777 444444444443                            3344567899


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           59 KALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        59 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      ++..+++..++++|-....|+.+|.+..++++++.|.++|.+++.++|++.++|++++..+...++..+|...
T Consensus       503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~  575 (777)
T KOG1128|consen  503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK  575 (777)
T ss_pred             HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988888443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.14  E-value=1.1e-09  Score=80.26  Aligned_cols=92  Identities=20%  Similarity=0.206  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRK  114 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  114 (320)
                      +..++.+|..+...|++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|++++..+|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999886   5799999999999999999999999999999886   678999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 020914          115 IKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       115 l~~~~~~~~~~~~A~~~~  132 (320)
                      +|.++...+++++|....
T Consensus        82 ~~~~~~~~~~~~~A~~~~   99 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATL   99 (119)
T ss_pred             HHHHHHHhCChHHHHHHH
Confidence            999999999999987664

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.14  E-value=3.7e-10  Score=75.09  Aligned_cols=70  Identities=23%  Similarity=0.430  Sum_probs=65.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914           14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus        14 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      ..+++..++|++|+.++++++.++|+++.++..+|.++..+|++++|+..++++++..|+++.+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            5688999999999999999999999999999999999999999999999999999999999988766654

>PRK11906 transcriptional regulator; Provisional

Probab=99.13  E-value=2.5e-09  Score=93.06  Aligned_cols=124  Identities=13%  Similarity=-0.008  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCC
Q 020914            9 SLKDKGNEFFKAGN---YLKAAALYTQAI---KQDPSNPTLFSNRAAAFLHL---------VKLNKALADAETTISLNPQ   73 (320)
Q Consensus         9 ~~~~~g~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~l~p~   73 (320)
                      .++.+|...+..+.   .+.|+.+|.+|+   +++|..+.+|..++.|+...         ..-.+|...-++|++++|+
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            55888888877764   568999999999   99999999999999999876         2346889999999999999


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      ++.++..+|.++...++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|.+..
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i  395 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI  395 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999996553

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.13  E-value=2e-10  Score=75.18  Aligned_cols=67  Identities=18%  Similarity=0.246  Sum_probs=61.6

Q ss_pred             HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 020914           51 FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR  117 (320)
Q Consensus        51 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  117 (320)
                      +...|++++|+..|++++..+|++..+++.+|.+|...|++++|.+.+++++..+|+++.++..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            3578999999999999999999999999999999999999999999999999999999888776654

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=2.1e-09  Score=88.27  Aligned_cols=110  Identities=14%  Similarity=0.092  Sum_probs=102.0

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHH
Q 020914           22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME---QYDDALSAF   98 (320)
Q Consensus        22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~---~~~~A~~~~   98 (320)
                      +.+.-+.-.+.-+..||++++-|..+|.+|..+|+++.|...|.+|+++.|++++.+..+|.+++...   .-.++...|
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            46677788888899999999999999999999999999999999999999999999999999988764   456899999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           99 QTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        99 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      +++++.+|++..+...|+..+...|++.+|...
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~  249 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAA  249 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHH
Confidence            999999999999999999999999999999765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.11  E-value=4.5e-09  Score=91.09  Aligned_cols=155  Identities=13%  Similarity=0.001  Sum_probs=127.2

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914           37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (320)
Q Consensus        37 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  116 (320)
                      +|....+++..+..++..|++++|...++..+...|+|+..+-..|+++...++.++|.+.+++++.++|+.+..+.++|
T Consensus       302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            37888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcCh
Q 020914          117 RVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKE  196 (320)
Q Consensus       117 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~  196 (320)
                      +.+...|++++|+....      ......+..+..+..+++.+...|+..++..-+.              ..++..|++
T Consensus       382 ~all~~g~~~eai~~L~------~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A--------------E~~~~~G~~  441 (484)
T COG4783         382 QALLKGGKPQEAIRILN------RYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA--------------EGYALAGRL  441 (484)
T ss_pred             HHHHhcCChHHHHHHHH------HHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH--------------HHHHhCCCH
Confidence            99999999999976642      2222223344555556666665555444433222              267789999


Q ss_pred             hHHHHhhhhhhcccc
Q 020914          197 KTDTEKYAPIVNVDK  211 (320)
Q Consensus       197 ~~A~~~~~~a~~~~~  211 (320)
                      ++|+..+..+.+...
T Consensus       442 ~~A~~~l~~A~~~~~  456 (484)
T COG4783         442 EQAIIFLMRASQQVK  456 (484)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999988887653

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.10  E-value=2e-09  Score=101.93  Aligned_cols=202  Identities=8%  Similarity=-0.036  Sum_probs=156.5

Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----
Q 020914           35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA-----  109 (320)
Q Consensus        35 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----  109 (320)
                      ..+|.+..++..+...+...|++++|+..++.+++.+|+...+|+.+|.++.+.+++.+|...  .++.+.+.+.     
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence            568999999999999999999999999999999999999999999999999999998887766  6777666665     


Q ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHH
Q 020914          110 --------------EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETA  175 (320)
Q Consensus       110 --------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  175 (320)
                                    .++..+|.+|..+|+.++|.+..+      .....++..+.+...++..+... +.+.|..++.+|
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~ye------r~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA  175 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWE------RLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA  175 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHH------HHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence                          899999999999999999977643      22333355666777777777766 777777777777


Q ss_pred             HHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCcc---------chh------------hHHHHhhHH--HHH
Q 020914          176 VKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPH---------THG------------SCFQFLRQY--ADD  232 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~---------~~g------------~~~~~~~~~--A~~  232 (320)
                      +..           +....++..+.+...+.++.+|......         ..|            .+|...+.|  ++.
T Consensus       176 V~~-----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~  244 (906)
T PRK14720        176 IYR-----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY  244 (906)
T ss_pred             HHH-----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence            654           4455677778888888888777653220         123            455566667  899


Q ss_pred             HHHHHhchhCCCCCCChhHhhhccccccc
Q 020914          233 SFSSAACLVAPKSIISYPQVWRGQGLRKW  261 (320)
Q Consensus       233 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~  261 (320)
                      .++.++++     +|...-+..+++.|+.
T Consensus       245 iLK~iL~~-----~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        245 ILKKILEH-----DNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHhc-----CCcchhhHHHHHHHHH
Confidence            99999988     4444556777777776

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.09  E-value=2.9e-10  Score=98.27  Aligned_cols=118  Identities=31%  Similarity=0.518  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   86 (320)
                      +.-+-..++..+..+.|+.|+..|.+||+++|+.+..+-+++.++.+.+++..|+.++.+|++++|....+|+.+|.+.+
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            45567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (320)
Q Consensus        87 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  124 (320)
                      .++++.+|...|++...+.|+++.+...+..+.....+
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888765544

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=5.2e-09  Score=82.87  Aligned_cols=107  Identities=26%  Similarity=0.387  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSN----------PTLFSNRAAAFLHLVKLNKALADAETT   67 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~a   67 (320)
                      ....+...|+-++..|+|++|...|..|+..        .|..          ...+.|.+.|+...|+|-++++....+
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            3567899999999999999999999999743        3443          467899999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914           68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (320)
Q Consensus        68 l~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  112 (320)
                      |..+|++..+|+.+|.++...-+..+|...|.++|+++|.-..+-
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            999999999999999999999999999999999999999876543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.08  E-value=6.8e-10  Score=96.37  Aligned_cols=68  Identities=26%  Similarity=0.356  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG---YFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        37 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      +|+++.+|+++|.+|..+|+|++|+..|+++|+++|++..+   |+++|.+|..+|++++|++++++|+++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44555555555555555555555555555555555555533   555555555555555555555555554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.07  E-value=2.8e-10  Score=77.92  Aligned_cols=78  Identities=14%  Similarity=0.187  Sum_probs=70.3

Q ss_pred             ccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           54 LVKLNKALADAETTISLNPQ--WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        54 ~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      .|+|++|+..++++++.+|.  +...++.+|.||+.+|+|++|+..+++ ++.+|.+......+|.++..+|++++|++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999999999995  567788899999999999999999999 999999999999999999999999999876


Q ss_pred             H
Q 020914          132 E  132 (320)
Q Consensus       132 ~  132 (320)
                      +
T Consensus        81 l   81 (84)
T PF12895_consen   81 L   81 (84)
T ss_dssp             H
T ss_pred             H
Confidence            4

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=3.2e-08  Score=87.56  Aligned_cols=202  Identities=17%  Similarity=0.133  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      .+++.--+.+...|+|++|++...+.+...|+++.+...--.+..++++|++|+...++-....-.+.. .+..+-|.++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yr   91 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHHH
Confidence            456666677788899999999999999999999999998889999999999998554333222222221 2678888899


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh-hHHH------------HhH---------
Q 020914           88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIR-SN-VDMV------------QHL---------  144 (320)
Q Consensus        88 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~------------~~~---------  144 (320)
                      +++.++|+.+++   .+++.+..+....+++...++++++|..++... ++ .+..            ..+         
T Consensus        92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~  168 (652)
T KOG2376|consen   92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP  168 (652)
T ss_pred             cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence            999999998888   556777777888888888899999988876522 11 0000            000         


Q ss_pred             --HHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh------------------HHhhhcChhHHHHhhh
Q 020914          145 --DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK------------------VYFLLDKEKTDTEKYA  204 (320)
Q Consensus       145 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~------------------~~~~lg~~~~A~~~~~  204 (320)
                        ....-+..++.+-.+...|.+..|++.+++|.....+.+.....                  ++..+|+..+|...|.
T Consensus       169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~  248 (652)
T KOG2376|consen  169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV  248 (652)
T ss_pred             CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence              00011222333333455667777777777775544443321111                  7777888888888888


Q ss_pred             hhhccccCc
Q 020914          205 PIVNVDKAF  213 (320)
Q Consensus       205 ~a~~~~~~~  213 (320)
                      ..+..+|.+
T Consensus       249 ~~i~~~~~D  257 (652)
T KOG2376|consen  249 DIIKRNPAD  257 (652)
T ss_pred             HHHHhcCCC
Confidence            887776654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.06  E-value=1.1e-08  Score=83.17  Aligned_cols=107  Identities=16%  Similarity=0.261  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRK   81 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l   81 (320)
                      ...|+.+..++..|+|.+|...|..-++..|+.   +.+++.||.+++.+|+|+.|...|..+++-.|++   +++++.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            448999999999999999999999999999986   6999999999999999999999999999988865   6889999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  114 (320)
                      |.+...+|+.++|...|+++++..|+...+...
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            999999999999999999999999998877643

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.05  E-value=1.3e-08  Score=73.70  Aligned_cols=92  Identities=18%  Similarity=0.153  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ---SAEVSRK  114 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~  114 (320)
                      +.+++.+|.++..+|+.++|+..|++++...++.   ..+++.+|.++..+|++++|+..+++++...|+   +..+...
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            3678999999999999999999999999976543   679999999999999999999999999999898   7788888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 020914          115 IKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       115 l~~~~~~~~~~~~A~~~~  132 (320)
                      ++.++...|+.++|+...
T Consensus        81 ~Al~L~~~gr~~eAl~~~   98 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWL   98 (120)
T ss_pred             HHHHHHHCCCHHHHHHHH
Confidence            888999999999997653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.05  E-value=4.9e-09  Score=100.34  Aligned_cols=121  Identities=10%  Similarity=-0.019  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--C-----------
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP--Q-----------   73 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~-----------   73 (320)
                      ...+..+...|.+.|++++|...|++..+  | +...|..+...|.+.|++++|+..|++.++..+  +           
T Consensus       158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~  234 (697)
T PLN03081        158 QYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS  234 (697)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence            44555666667777777777777766532  2 455677777777777777777777777655322  1           


Q ss_pred             -----------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914           74 -----------------------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE  130 (320)
Q Consensus        74 -----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  130 (320)
                                             +..++..+...|.+.|++++|.+.|+..   .+.+..+|..+...+...|+.++|.+
T Consensus       235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~  311 (697)
T PLN03081        235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALC  311 (697)
T ss_pred             hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHH
Confidence                                   2223445566677777777777777654   34466677777777777777777776


Q ss_pred             HHH
Q 020914          131 VEN  133 (320)
Q Consensus       131 ~~~  133 (320)
                      ++.
T Consensus       312 lf~  314 (697)
T PLN03081        312 LYY  314 (697)
T ss_pred             HHH
Confidence            643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.05  E-value=9.9e-09  Score=89.62  Aligned_cols=114  Identities=18%  Similarity=0.132  Sum_probs=106.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 020914           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA   94 (320)
Q Consensus        15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A   94 (320)
                      ..+...++++.|++.+++..+.+|+   +...++.++...++..+|+..+.++++.+|.+...+...+..+...++++.|
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            4445678999999999999988874   6677999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           95 LSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        95 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      ++..++++.+.|++...|..|+.+|...|+++.|+..
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla  290 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA  290 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            9999999999999999999999999999999999755

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.04  E-value=4.5e-09  Score=89.15  Aligned_cols=180  Identities=17%  Similarity=0.107  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--C----
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP--S----NPTLFSNRAAAFLHLVKLNKALADAETTISLNP--Q----   73 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~----   73 (320)
                      -++.+...|+.|...|++++|..+|.++....-  +    -+..+...|.+|... ++++|+.+|++|+.+.-  +    
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~  112 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ  112 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence            356677788888889999999999999976532  1    146778888887766 99999999999998732  2    


Q ss_pred             CHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHH
Q 020914           74 WEKGYFRKGCILEAM-EQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE  146 (320)
Q Consensus        74 ~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  146 (320)
                      -..++..+|.+|... |++++|+++|++|+.+....      ..++..++.++...|++++|+++++...  ...     
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~--~~~-----  185 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA--KKC-----  185 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--HTC-----
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHh-----
Confidence            256788999999998 99999999999999873322      3456677777778888888876643100  000     


Q ss_pred             HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCc
Q 020914          147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESP  216 (320)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~  216 (320)
                              +.....   . ..+.+.+-.++           -++...|+...|.+.+++....+|.+...
T Consensus       186 --------l~~~l~---~-~~~~~~~l~a~-----------l~~L~~~D~v~A~~~~~~~~~~~~~F~~s  232 (282)
T PF14938_consen  186 --------LENNLL---K-YSAKEYFLKAI-----------LCHLAMGDYVAARKALERYCSQDPSFASS  232 (282)
T ss_dssp             --------CCHCTT---G-HHHHHHHHHHH-----------HHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred             --------hccccc---c-hhHHHHHHHHH-----------HHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence                    000000   0 00111111111           16667788888888999988888876543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.04  E-value=1.2e-09  Score=94.95  Aligned_cols=70  Identities=19%  Similarity=0.170  Sum_probs=66.7

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL---FSNRAAAFLHLVKLNKALADAETTISLN   71 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (320)
                      +.|+++.+++++|..++..|+|++|+..|++||+++|+++.+   |+++|.+|..+|+.++|+.++++|+++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            468899999999999999999999999999999999999855   9999999999999999999999999983

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.04  E-value=1.2e-07  Score=76.37  Aligned_cols=171  Identities=18%  Similarity=0.228  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGYF   79 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~   79 (320)
                      .+..|++.|...++.|+|++|+..|++.....|..   ..+...++.++.+.+++++|+...++-+++.|.++   -+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            46789999999999999999999999999988876   58899999999999999999999999999998764   5788


Q ss_pred             HHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHH
Q 020914           80 RKGCILEAM--------EQYDDALSAFQTALQYNPQSAEVSR---KIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK  148 (320)
Q Consensus        80 ~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  148 (320)
                      .+|.+++..        .--.+|+..|+..+...|++..+-.   .+..+...+...                       
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~-----------------------  169 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH-----------------------  169 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH-----------------------
Confidence            899987653        2345788999999999999865432   222222111111                       


Q ss_pred             HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh------HHhhhcChhHHHHh
Q 020914          149 SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK------VYFLLDKEKTDTEK  202 (320)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~------~~~~lg~~~~A~~~  202 (320)
                         ....+..+..+|.+.-+...++..++.|++.-...+.      +|..+|-.++|...
T Consensus       170 ---Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         170 ---EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             ---HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence               1223566666777777777777777777654433332      66667766666443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.03  E-value=4.6e-09  Score=79.75  Aligned_cols=96  Identities=18%  Similarity=0.334  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--
Q 020914           23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFRKGCILEAMEQ--   90 (320)
Q Consensus        23 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~--   90 (320)
                      |+.|.+.++.....+|.+++.+++=|.++..+.+          +++|+.-|+.||.++|+...+++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6889999999999999999999999999988855          4688999999999999999999999999988764  


Q ss_pred             ---------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914           91 ---------YDDALSAFQTALQYNPQSAEVSRKIKRV  118 (320)
Q Consensus        91 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~  118 (320)
                               |++|..+|++|+..+|++...+..|...
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                     7889999999999999998877666443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.03  E-value=1.3e-08  Score=83.89  Aligned_cols=195  Identities=9%  Similarity=-0.091  Sum_probs=122.8

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHH
Q 020914           39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG---YFRKGCILEAMEQYDDALSAFQTALQYNPQSA---EVS  112 (320)
Q Consensus        39 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~  112 (320)
                      ..+..++..|..+...|+|++|+..|++++...|..+.+   .+.+|.+|+.++++++|+..|++.++.+|+++   .++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            357889999999999999999999999999999988654   59999999999999999999999999999885   456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhh
Q 020914          113 RKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFL  192 (320)
Q Consensus       113 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~  192 (320)
                      +.+|.++...+.-.-.                      -................|...+++-++.|++..- .+.+-..
T Consensus       110 Y~~g~~~~~~~~~~~~----------------------~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-a~~A~~r  166 (243)
T PRK10866        110 YMRGLTNMALDDSALQ----------------------GFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-TTDATKR  166 (243)
T ss_pred             HHHHHhhhhcchhhhh----------------------hccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-HHHHHHH
Confidence            6666554322210000                      0000011111112223344555555555554321 1111111


Q ss_pred             hcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchh
Q 020914          193 LDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFF  270 (320)
Q Consensus       193 lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  270 (320)
                      +.....-+..            .....|..|...+.|  |+..|+.+++..|...  ..+++..-++.++..+|..+++-
T Consensus       167 l~~l~~~la~------------~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~--~~~eal~~l~~ay~~lg~~~~a~  232 (243)
T PRK10866        167 LVFLKDRLAK------------YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ--ATRDALPLMENAYRQLQLNAQAD  232 (243)
T ss_pred             HHHHHHHHHH------------HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc--hHHHHHHHHHHHHHHcCChHHHH
Confidence            1111111100            012366777777888  8888888887654433  45777777788888888777653

>PRK11906 transcriptional regulator; Provisional

Probab=99.01  E-value=1e-08  Score=89.34  Aligned_cols=109  Identities=9%  Similarity=-0.027  Sum_probs=99.0

Q ss_pred             chHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914            3 AEAEEMSLKDKGNEFFKA---------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ   73 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   73 (320)
                      .|..+.++..++.+++..         .+-.+|.+..++|++++|.++.++..+|.+....++++.|+..|++|+.++|+
T Consensus       291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn  370 (458)
T PRK11906        291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD  370 (458)
T ss_pred             CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc
Confidence            356678888888887654         34578999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 020914           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (320)
Q Consensus        74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  111 (320)
                      .+.+|+..|.+....|+.++|++..+++++++|.-..+
T Consensus       371 ~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        371 IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence            99999999999999999999999999999999976554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.97  E-value=6.7e-10  Score=74.86  Aligned_cols=64  Identities=22%  Similarity=0.343  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLN-------PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      +.++.++|.+|..+|++++|+.+|++++++.       |..+.++.++|.++..+|++++|+++|++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4455555555555555555555555555431       112345555666666666666666666665554

...

>PRK15331 chaperone protein SicA; Provisional

Probab=98.96  E-value=1.7e-08  Score=76.00  Aligned_cols=97  Identities=9%  Similarity=-0.024  Sum_probs=91.2

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        36 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      +.++.-+..+..|.-++..|++++|...|+-....+|.+++.|+.+|.|+..+++|++|+..|..|..++++++...+..
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            44555688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 020914          116 KRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       116 ~~~~~~~~~~~~A~~~~  132 (320)
                      |.++..+|+...|...+
T Consensus       112 gqC~l~l~~~~~A~~~f  128 (165)
T PRK15331        112 GQCQLLMRKAAKARQCF  128 (165)
T ss_pred             HHHHHHhCCHHHHHHHH
Confidence            99999999999997654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.95  E-value=2.3e-09  Score=72.18  Aligned_cols=68  Identities=15%  Similarity=0.271  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ----D---PSNPTLFSNRAAAFLHLVKLNKALADAETTISLN   71 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (320)
                      |.-+..+.++|.++...|+|++|+.+|++++++    .   |..+.++.++|.++..+|++++|++.+++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            677899999999999999999999999999965    2   2236789999999999999999999999999863

...

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.93  E-value=5.9e-08  Score=81.03  Aligned_cols=190  Identities=15%  Similarity=0.150  Sum_probs=124.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914           15 NEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD   93 (320)
Q Consensus        15 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~   93 (320)
                      ..+....+|+.|+..++-.+..+.+.. ..-..+|.|++++|+|++|+..|+-+.+.+.-+.+.+.+++.|++.+|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            456678899999999998887765543 6677799999999999999999999998777788999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHH
Q 020914           94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETME  173 (320)
Q Consensus        94 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  173 (320)
                      |...-.+|    |+++-....+-.+-...++-++-..+   .+.+      .... +-...++.+...+..++.|+..|.
T Consensus       110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~f---h~~L------qD~~-EdqLSLAsvhYmR~HYQeAIdvYk  175 (557)
T KOG3785|consen  110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTF---HSSL------QDTL-EDQLSLASVHYMRMHYQEAIDVYK  175 (557)
T ss_pred             HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHH---HHHH------hhhH-HHHHhHHHHHHHHHHHHHHHHHHH
Confidence            98766654    66665554444444444444333222   1111      1110 111223344444444444444444


Q ss_pred             HHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc
Q 020914          174 TAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT  218 (320)
Q Consensus       174 ~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~  218 (320)
                      ..+..-++.+.++-.   +|+.+.=++-+.+.+...+.--|++.....
T Consensus       176 rvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N  223 (557)
T KOG3785|consen  176 RVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN  223 (557)
T ss_pred             HHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence            444333333333322   788888888888888888877776654443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.92  E-value=1.6e-07  Score=92.93  Aligned_cols=267  Identities=10%  Similarity=-0.019  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------H
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------E   75 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~   75 (320)
                      ......+|.++...|++++|...+++++...|..     ..+...+|.++...|++++|...+++++......      .
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~  531 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL  531 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            3455567888999999999999999999865543     2456789999999999999999999999764321      3


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH-HH
Q 020914           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL-DE  146 (320)
Q Consensus        76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~  146 (320)
                      .++..+|.++...|++++|...+++++.+...        ...++..++.++...|++++|.....  ......... ..
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~--~al~~~~~~~~~  609 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCAR--KGLEVLSNYQPQ  609 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH--HhHHhhhccCch
Confidence            46778899999999999999999999987322        12345677888888899999976642  222221111 11


Q ss_pred             HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---h-------hHHhhhcChhHHHHhhhhhhccccCcCC-
Q 020914          147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---A-------KVYFLLDKEKTDTEKYAPIVNVDKAFES-  215 (320)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---~-------~~~~~lg~~~~A~~~~~~a~~~~~~~~~-  215 (320)
                      .........+.+....|....+...++++...........   .       ..+...|+.+.|...........+.... 
T Consensus       610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  689 (903)
T PRK04841        610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHF  689 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchh
Confidence            1222334456666677777778777777766544321100   0       1334467777877776665542221110 


Q ss_pred             ----ccchhhHHHHhhHH--HHHHHHHHhchhCCCCCC-ChhHhhhcccccccccCcccchhhhccc
Q 020914          216 ----PHTHGSCFQFLRQY--ADDSFSSAACLVAPKSII-SYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       216 ----~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                          ....+.++...+++  |...+++++........+ .-..++..+|.+++..|+...+...+.+
T Consensus       690 ~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~  756 (903)
T PRK04841        690 LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE  756 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                01256666777777  888999988764333222 2345677888889999988777655544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.91  E-value=3e-08  Score=89.93  Aligned_cols=141  Identities=14%  Similarity=0.155  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  121 (320)
                      .+++.+|..|...|++++|+.+.++||...|..++.|+..|.++.+.|++.+|.+.++.|-.+++.+..+-...+....+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhH--HHHhHHHH-HHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhc
Q 020914          122 AKDKKRAQEVENIRSNVD--MVQHLDEF-KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHET  182 (320)
Q Consensus       122 ~~~~~~A~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~  182 (320)
                      .|+.++|+++.......+  ....+... ........|.++...|.+..|++.+......|.+-
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~  338 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF  338 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            999999988754332222  11222211 22333445788888888888888888888777653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=2.4e-08  Score=85.07  Aligned_cols=100  Identities=15%  Similarity=0.207  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   86 (320)
                      ..++.+++.++.+.++|.+|+....++|+++|+++.+++.+|.++..+|+|+.|+.+|+++++++|+|..+...+..+-.
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HccCHHHH-HHHHHHHHhhCC
Q 020914           87 AMEQYDDA-LSAFQTALQYNP  106 (320)
Q Consensus        87 ~~~~~~~A-~~~~~~al~~~p  106 (320)
                      +..++.+. .+.|.+++..-+
T Consensus       337 k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            88777665 788888887654

>PLN03077 Protein ECB2; Provisional

Probab=98.89  E-value=3.9e-08  Score=96.39  Aligned_cols=258  Identities=10%  Similarity=-0.070  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP-QWEKGYFRKGC   83 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~   83 (320)
                      ...|..+...+.+.|++++|++.|++..+.  .|+. ..+..+-.++...|++++|.+.++.+++... .+..++..+..
T Consensus       354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~  432 (857)
T PLN03077        354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE  432 (857)
T ss_pred             eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            345666777777778888888887766543  3443 3333333455566666666666666665432 24556667777


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHH--HHH------------
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE--FKS------------  149 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~------------  149 (320)
                      .|.+.|++++|.+.|++..+   .+..+|..+...+...|+.++|+.++..... ...++...  ...            
T Consensus       433 ~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~  508 (857)
T PLN03077        433 MYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCG  508 (857)
T ss_pred             HHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHh
Confidence            77777777777777776432   3455666666666667777777665432110 00000000  000            


Q ss_pred             ----------------HHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh--hHHhhhcChhHHHHhhhhhhcc--
Q 020914          150 ----------------EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA--KVYFLLDKEKTDTEKYAPIVNV--  209 (320)
Q Consensus       150 ----------------~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~--~~~~~lg~~~~A~~~~~~a~~~--  209 (320)
                                      .+...+-+.+...|.++.|...|+..   -++....+.  ..|...|+.++|++.|++..+.  
T Consensus       509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~  585 (857)
T PLN03077        509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV  585 (857)
T ss_pred             HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence                            00111122333334444444443331   000000000  1666778888888888877653  


Q ss_pred             ccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          210 DKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       210 ~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      .|+......+-..+...|..  |.+.|+...+...-.++   ...|..+...+.+.|+.+++..-+++
T Consensus       586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~---~~~y~~lv~~l~r~G~~~eA~~~~~~  650 (857)
T PLN03077        586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN---LKHYACVVDLLGRAGKLTEAYNFINK  650 (857)
T ss_pred             CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            45444333233334455666  77788777743222211   24466666777777777777665554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.89  E-value=3.3e-08  Score=82.21  Aligned_cols=92  Identities=20%  Similarity=0.181  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHH
Q 020914           41 PTLFSNRAAAF-LHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSR  113 (320)
Q Consensus        41 ~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  113 (320)
                      ...++..|..+ ...|+|++|+..|+..++..|+.   +.+++.+|.+|+..|++++|+..|+++++..|++   ++++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            47788888887 56799999999999999999998   5899999999999999999999999999998875   77899


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 020914          114 KIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       114 ~l~~~~~~~~~~~~A~~~~  132 (320)
                      .+|.++...|+.++|...+
T Consensus       222 klg~~~~~~g~~~~A~~~~  240 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVY  240 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHH
Confidence            9999999999999997764

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.89  E-value=3e-08  Score=90.38  Aligned_cols=107  Identities=15%  Similarity=0.071  Sum_probs=93.0

Q ss_pred             chHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 020914            3 AEAEEMSLKDKGNEFFKA--------GNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP   72 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   72 (320)
                      .|+.+.++-.++.++...        ++...+.....+++.+  +|.++.++.-+|......|++++|...+++|+.++|
T Consensus       372 dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p  451 (517)
T PRK10153        372 EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM  451 (517)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence            577888888888877554        2345667777776664  788889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 020914           73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE  110 (320)
Q Consensus        73 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  110 (320)
                       +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus       452 -s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        452 -SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence             5889999999999999999999999999999999885

>PLN03077 Protein ECB2; Provisional

Probab=98.87  E-value=1e-07  Score=93.50  Aligned_cols=242  Identities=7%  Similarity=-0.124  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHH-------
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-NPQWEKGY-------   78 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~-------   78 (320)
                      ...+..+...|.+.|++++|.+.|++..+   .+...|..+...|...|+.++|+..|++.+.. .|+.....       
T Consensus       424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~  500 (857)
T PLN03077        424 VVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACA  500 (857)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHh
Confidence            44667778889999999999999987543   35678888999999999999999999988753 44433221       


Q ss_pred             ---------------------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           79 ---------------------------FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        79 ---------------------------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                                                 ..+-..|.+.|+.++|...|+..    +.+..+|..+...+...|+.++|+++
T Consensus       501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~l  576 (857)
T PLN03077        501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVEL  576 (857)
T ss_pred             hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence                                       22336788889999999998876    66788999999999999999999887


Q ss_pred             HHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh---------HHhhhcChhHHHHh
Q 020914          132 ENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEK  202 (320)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---------~~~~lg~~~~A~~~  202 (320)
                      ..........++..     .+..+-......|.++++...++...+.+    .+.|+         .+...|+.++|.+.
T Consensus       577 f~~M~~~g~~Pd~~-----T~~~ll~a~~~~g~v~ea~~~f~~M~~~~----gi~P~~~~y~~lv~~l~r~G~~~eA~~~  647 (857)
T PLN03077        577 FNRMVESGVNPDEV-----TFISLLCACSRSGMVTQGLEYFHSMEEKY----SITPNLKHYACVVDLLGRAGKLTEAYNF  647 (857)
T ss_pred             HHHHHHcCCCCCcc-----cHHHHHHHHhhcChHHHHHHHHHHHHHHh----CCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence            64322211111111     11112233444566777777777655333    23332         77788999999999


Q ss_pred             hhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchh
Q 020914          203 YAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFF  270 (320)
Q Consensus       203 ~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  270 (320)
                      ++.. .+.|+......+-..+...+..  +....++.+++     .|+.+..+..+++.|...|+++++.
T Consensus       648 ~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l-----~p~~~~~y~ll~n~ya~~g~~~~a~  711 (857)
T PLN03077        648 INKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFEL-----DPNSVGYYILLCNLYADAGKWDEVA  711 (857)
T ss_pred             HHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCcchHHHHHHHHHHCCChHHHH
Confidence            9876 3555532211111122333333  77778888888     5555666888888898899888764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.86  E-value=1.2e-07  Score=76.43  Aligned_cols=126  Identities=17%  Similarity=0.197  Sum_probs=101.4

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccC-----------HHHHHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVK-----------LNKALADAETTI   68 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al   68 (320)
                      +|-...+++.+|.+++..|++++|+..|++.++..|++   +.+++.+|.++..+..           ..+|+..|+..+
T Consensus        38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li  117 (203)
T PF13525_consen   38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI  117 (203)
T ss_dssp             STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence            56677899999999999999999999999999999987   4789999999776643           458999999999


Q ss_pred             hcCCCCHHH-----------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHHHHHHHH
Q 020914           69 SLNPQWEKG-----------------YFRKGCILEAMEQYDDALSAFQTALQYNPQSAE---VSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        69 ~l~p~~~~~-----------------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~A  128 (320)
                      +..|+...+                 -+..|..|++.|.|..|+.-|+.+++..|+...   ++..+...+..+|..+.+
T Consensus       118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            999987432                 355788899999999999999999999999854   567777777777777744

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=4.3e-08  Score=81.03  Aligned_cols=107  Identities=30%  Similarity=0.496  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   80 (320)
                      ..|..+...|+.++...+|..|+.+|.++|...-.+    +..|.|+|.|...+|+|..|+..+.+++.++|.+..++++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            457788999999999999999999999999875443    6789999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 020914           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (320)
Q Consensus        81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  111 (320)
                      =+.|++.+.++.+|....+..+.++-+...+
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            9999999999999999999988876554443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.82  E-value=7.6e-07  Score=77.24  Aligned_cols=257  Identities=11%  Similarity=0.042  Sum_probs=181.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      +...|..-|.--..++++..|...|++||..+..+..+|...+.+-++..+...|...+++|+.+-|.-.+.|+..--+-
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE  151 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME  151 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            45567777888888999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHH
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF  165 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (320)
                      ..+|+...|.+.|++-++..|+ ..+|...-......+..+.|..+++..-.  ..+.     ...+..++......|.+
T Consensus       152 E~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~--~HP~-----v~~wikyarFE~k~g~~  223 (677)
T KOG1915|consen  152 EMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVL--VHPK-----VSNWIKYARFEEKHGNV  223 (677)
T ss_pred             HHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHhe--eccc-----HHHHHHHHHHHHhcCcH
Confidence            9999999999999999999995 56777777777888888888877542111  1111     12233455556666777


Q ss_pred             HHHHHHHHHHHHhHhhccccChh------HHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH----H-----
Q 020914          166 SFVVETMETAVKSWHETSKVDAK------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY----A-----  230 (320)
Q Consensus       166 ~~a~~~~~~a~~~~~~~~~~~~~------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~----A-----  230 (320)
                      ..+...|+.|++.+.+......-      .-..+..++.|.-.|+-+++.-|..........+...-++|    .     
T Consensus       224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I  303 (677)
T KOG1915|consen  224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI  303 (677)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence            77778888877766552111000      11233556777777777777666543222222233333333    1     


Q ss_pred             ----HHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          231 ----DDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       231 ----~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                          .-.|++-+..     +|.+.++|+..-..-...|+.+...+-++.
T Consensus       304 v~KRk~qYE~~v~~-----np~nYDsWfdylrL~e~~g~~~~Ire~yEr  347 (677)
T KOG1915|consen  304 VGKRKFQYEKEVSK-----NPYNYDSWFDYLRLEESVGDKDRIRETYER  347 (677)
T ss_pred             hhhhhhHHHHHHHh-----CCCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence                2246777766     888888998665544444554444333333

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=6.9e-07  Score=74.83  Aligned_cols=121  Identities=21%  Similarity=0.187  Sum_probs=85.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--------------cCC----
Q 020914           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS--------------LNP----   72 (320)
Q Consensus        11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------l~p----   72 (320)
                      .-+|.+++..|+|++|+..|+-+.+.+...++.+.++|.|++.+|.|.+|...-.++-+              ++.    
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~  140 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI  140 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence            34589999999999999999999887777789999999999999998888766555422              111    


Q ss_pred             --------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           73 --------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        73 --------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                              +..+--..++.+++..-.|++|++.|++.|.-+|+....-..++.++..+..++-+.++
T Consensus       141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqev  207 (557)
T KOG3785|consen  141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEV  207 (557)
T ss_pred             HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence                    01122344555555666788888888888888777766666666666666555554443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.77  E-value=3.1e-07  Score=77.74  Aligned_cols=121  Identities=13%  Similarity=-0.047  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--KLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      +.+.....-.+++..++++.|.+.++.+-+.+.+..-....-|++....|  ++++|.-.|+......|..+..+..+|.
T Consensus       130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~  209 (290)
T PF04733_consen  130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV  209 (290)
T ss_dssp             CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            45566667788899999999999999988888766555555555555555  5899999999988888889999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK  126 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  126 (320)
                      ++..+|+|++|.+.+++++..+|.++++..++..+....|+..
T Consensus       210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~  252 (290)
T PF04733_consen  210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT  252 (290)
T ss_dssp             HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred             HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence            9999999999999999999999999999999998888888773

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.76  E-value=9e-08  Score=83.71  Aligned_cols=98  Identities=17%  Similarity=0.238  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   86 (320)
                      ++....++.++...++-.+|+..+.+++..+|.+..++...+..+...++++.|+...++++++.|++...|+.|+.+|.
T Consensus       200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi  279 (395)
T PF09295_consen  200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYI  279 (395)
T ss_pred             CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            44566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhh
Q 020914           87 AMEQYDDALSAFQTALQY  104 (320)
Q Consensus        87 ~~~~~~~A~~~~~~al~~  104 (320)
                      .+|++++|+..+..+--.
T Consensus       280 ~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  280 QLGDFENALLALNSCPML  297 (395)
T ss_pred             hcCCHHHHHHHHhcCcCC
Confidence            999999999777654433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=1.4e-07  Score=77.09  Aligned_cols=176  Identities=15%  Similarity=0.166  Sum_probs=120.3

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 020914           18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSA   97 (320)
Q Consensus        18 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~   97 (320)
                      .+..+|..||+++..-.+.+|.+-..+..+|.||+...+|..|..+|++.-.+.|...+..+..++.++..+.+.+|+..
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--H---hhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHH
Q 020914           98 FQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN--I---RSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETM  172 (320)
Q Consensus        98 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  172 (320)
                      ......    ++..+...       -+.+.|+...+  +   +.-++..+  ...........|=.....|.++.+.+.|
T Consensus       101 ~~~~~D----~~~L~~~~-------lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkF  167 (459)
T KOG4340|consen  101 AFLLLD----NPALHSRV-------LQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKF  167 (459)
T ss_pred             HHHhcC----CHHHHHHH-------HHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHH
Confidence            765543    23322222       22233332211  0   00000000  0111222233344445556666666666


Q ss_pred             HHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhccc
Q 020914          173 ETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVD  210 (320)
Q Consensus       173 ~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~~~  210 (320)
                      ..|.+.    .-..|.       +++..+++..|++.....++.+
T Consensus       168 qaAlqv----sGyqpllAYniALaHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  168 QAALQV----SGYQPLLAYNLALAHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             HHHHhh----cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            665542    122222       8888899999998887776543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=1.7e-06  Score=76.93  Aligned_cols=124  Identities=22%  Similarity=0.237  Sum_probs=100.6

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS---NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   79 (320)
                      .|+++.+++..-.++.+.++|++|+..    ++.++.   +....+..+.|.+++++.++|+.+++   -+++.+..+..
T Consensus        42 ~pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~  114 (652)
T KOG2376|consen   42 VPDDEDAIRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLE  114 (652)
T ss_pred             CCCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHH
Confidence            478888999999999999999999955    444442   12223789999999999999999998   56788888999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCC-------------------------------HHHHHHHHHHHHHHHHHHHH
Q 020914           80 RKGCILEAMEQYDDALSAFQTALQYNPQS-------------------------------AEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------------------------------~~~~~~l~~~~~~~~~~~~A  128 (320)
                      ..|++++++|+|++|...|+..++.+-++                               .+..++.+-++...|++.+|
T Consensus       115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA  194 (652)
T KOG2376|consen  115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQA  194 (652)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence            99999999999999999999986654332                               34567788888889999999


Q ss_pred             HHHHH
Q 020914          129 QEVEN  133 (320)
Q Consensus       129 ~~~~~  133 (320)
                      +++..
T Consensus       195 ~elL~  199 (652)
T KOG2376|consen  195 IELLE  199 (652)
T ss_pred             HHHHH
Confidence            98864

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.71  E-value=4.4e-08  Score=81.45  Aligned_cols=221  Identities=6%  Similarity=-0.047  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914           44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (320)
Q Consensus        44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  123 (320)
                      .-..|..|+++|+|++||+||.+++..+|.++-.+.+++.+|+++.+|..|...+..|+.++.....+|...+.....+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhh--hhhHHHHHHHHHHHHHHhHhhccccCh--hHHhhhcChhHH
Q 020914          124 DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC--WKHVFSFVVETMETAVKSWHETSKVDA--KVYFLLDKEKTD  199 (320)
Q Consensus       124 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~--~~~~~lg~~~~A  199 (320)
                      ...+|.+-.+.      ...+.+...++...+..+..  .......+..-+-.|...-.+.+.+..  ..+...|.++.+
T Consensus       180 ~~~EAKkD~E~------vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~  253 (536)
T KOG4648|consen  180 NNMEAKKDCET------VLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVP  253 (536)
T ss_pred             hHHHHHHhHHH------HHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccc
Confidence            98888654322      11121212221111111110  011111111001111111112221111  167777888888


Q ss_pred             HHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          200 TEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       200 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      +.+|.+-................+.....|  |+..-.+++..     .+.+-.+.-+.|.+.--+|...++...+++
T Consensus       254 i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~-----~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T  326 (536)
T KOG4648|consen  254 VVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNP-----KPTPMPDTSGPPKAETIAKTSKEVKPTKQT  326 (536)
T ss_pred             eeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCC-----CCCcCcccCCCchhHHHHhhhhhcCcchhh
Confidence            888866655443333222234556666666  87777788766     555555566667666666666655544444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.69  E-value=1.5e-06  Score=66.43  Aligned_cols=122  Identities=21%  Similarity=0.241  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIK-QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFRKGC   83 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~   83 (320)
                      ....+.+|+.+...|++.+|...|++++. +.-.++..+..++.+.+..+++..|...+++..+-+|.  .+.....+|.
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR  168 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR  168 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence            34577899999999999999999999985 56678899999999999999999999999999999985  5788899999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  129 (320)
                      ++...|++.+|...|+.++...|+ +.+....+..+..+|+.+++.
T Consensus       169 ~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~  213 (251)
T COG4700         169 TLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREAN  213 (251)
T ss_pred             HHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHH
Confidence            999999999999999999999885 566667788888888777774

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.69  E-value=3.3e-07  Score=69.77  Aligned_cols=68  Identities=24%  Similarity=0.243  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914           57 LNKALADAETTISLNPQWEKGYFRKGCILEAMEQ----------YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (320)
Q Consensus        57 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  124 (320)
                      ++.|.+.++.....+|.+++.+++.|.++..+.+          +++|+.-|+.||.++|+...++..+|.++...+.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999999988754          4678999999999999999999999999887664

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.61  E-value=1.1e-07  Score=56.01  Aligned_cols=41  Identities=20%  Similarity=0.295  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (320)
Q Consensus        76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  116 (320)
                      .+++.+|.+|..+|++++|++.|+++++.+|+++.+|..++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            34555555555555555555555555555555555555544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.61  E-value=2.3e-08  Score=83.00  Aligned_cols=100  Identities=28%  Similarity=0.447  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      ......+...+..|.+++|++.|..+|+++|..+..|..+|.+++++++...|+..|..++.++|+....|-.+|.+...
T Consensus       115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl  194 (377)
T KOG1308|consen  115 NDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL  194 (377)
T ss_pred             HHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence            34455667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCC
Q 020914           88 MEQYDDALSAFQTALQYNPQ  107 (320)
Q Consensus        88 ~~~~~~A~~~~~~al~~~p~  107 (320)
                      +|++++|..++..+.+++-+
T Consensus       195 lg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  195 LGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hhchHHHHHHHHHHHhcccc
Confidence            99999999999999998643

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.61  E-value=4.1e-05  Score=65.33  Aligned_cols=241  Identities=11%  Similarity=0.072  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      ..-++..-+...-..|+++.|-.+..++-+..++ .-.....++......|+++.|.....+++...|.++.+....-.+
T Consensus       117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~  196 (400)
T COG3071         117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRA  196 (400)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHH
Confidence            3456666777888899999999999999998444 356788899999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHH---HH--HHHHHHHHHHHHHHHHH----hhhhHHHHhHHHHHHHHhhhh
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKI---KR--VSQLAKDKKRAQEVENI----RSNVDMVQHLDEFKSEMSEKY  155 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---~~--~~~~~~~~~~A~~~~~~----~~~~~~~~~~~~~~~~~~~~~  155 (320)
                      |...|++.+......+.-+-.--+.+-...+   +.  +....++-..+..+...    .......+.+......-+...
T Consensus       197 y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l  276 (400)
T COG3071         197 YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL  276 (400)
T ss_pred             HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence            9999999998888777666433222111110   00  00001111111111000    000111111111111111111


Q ss_pred             cchhhhhhHHHHHH--------------------HHHHHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhc
Q 020914          156 GAEECWKHVFSFVV--------------------ETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVN  208 (320)
Q Consensus       156 ~~~~~~~~~~~~a~--------------------~~~~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~  208 (320)
                      |.-..+...+..++                    ....++++.+-+-..-+|.       .+...+.+.+|..+++.++.
T Consensus       277 ~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~  356 (400)
T COG3071         277 GDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK  356 (400)
T ss_pred             CChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            11111111111111                    1122333334344444444       55666779999999999999


Q ss_pred             cccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCC
Q 020914          209 VDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSI  246 (320)
Q Consensus       209 ~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~  246 (320)
                      ..|+.......|.++..+++-  |-..++.++.+..+.+.
T Consensus       357 ~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~  396 (400)
T COG3071         357 LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL  396 (400)
T ss_pred             cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence            999887777799999999986  99999999966544443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.60  E-value=3.7e-06  Score=83.29  Aligned_cols=239  Identities=11%  Similarity=-0.005  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-------   73 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-------   73 (320)
                      ..++..+|.++...|++++|...+.+++......      ..++..+|.++...|++++|...+++++.+...       
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  570 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP  570 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            4466788999999999999999999999763321      356788999999999999999999999886321       


Q ss_pred             -CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH-HH
Q 020914           74 -WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ-----SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL-DE  146 (320)
Q Consensus        74 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~  146 (320)
                       ...++..+|.++...|++++|...+++++.+...     ...++..++.+....|+++.|.........+...... ..
T Consensus       571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~  650 (903)
T PRK04841        571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD  650 (903)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence             2344667899999999999999999999886432     2445666888888899999887654221111000000 00


Q ss_pred             HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhc-------cccChhHHhhhcChhHHHHhhhhhhccccCcCC----
Q 020914          147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHET-------SKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFES----  215 (320)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~----  215 (320)
                      ............+...|....+..............       ......++...|++.+|...+++++........    
T Consensus       651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~  730 (903)
T PRK04841        651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL  730 (903)
T ss_pred             HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence            000000000001111222222222222111000000       000111677889999999999998876433211    


Q ss_pred             ---ccchhhHHHHhhHH--HHHHHHHHhchhCCCC
Q 020914          216 ---PHTHGSCFQFLRQY--ADDSFSSAACLVAPKS  245 (320)
Q Consensus       216 ---~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~  245 (320)
                         ....|.++...|+.  |...+.+|+.+..+..
T Consensus       731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g  765 (903)
T PRK04841        731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG  765 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence               11256777777887  9999999998865544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.60  E-value=3.7e-07  Score=77.50  Aligned_cols=126  Identities=13%  Similarity=0.125  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCC--C--
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP--S----NPTLFSNRAAAFLHL-VKLNKALADAETTISLNPQ--W--   74 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~--~--   74 (320)
                      .+..+...|.++. .+++++|+.+|++|+++.-  .    -+.++..+|.+|... |++++|++.|++|+.+...  .  
T Consensus        74 Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~  152 (282)
T PF14938_consen   74 AAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH  152 (282)
T ss_dssp             HHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh
Confidence            3455566566654 4499999999999998621  1    257899999999999 9999999999999998432  2  


Q ss_pred             --HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----H---HHHHHHHHHHHHHHHHHHHHHHH
Q 020914           75 --EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS----A---EVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        75 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~---~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                        ..++...|.++..+|+|++|++.|++.....-++    .   ..+...+.++...|+...|....
T Consensus       153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~  219 (282)
T PF14938_consen  153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKAL  219 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence              4578899999999999999999999998864322    1   23455667777778877775543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.59  E-value=1.3e-07  Score=55.71  Aligned_cols=42  Identities=14%  Similarity=0.120  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      .++..+|.+|..+|++++|+..|+++++.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            566777777777777777777777777777777777777664

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=1.5e-06  Score=71.23  Aligned_cols=130  Identities=20%  Similarity=0.214  Sum_probs=111.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------c--
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS----------L--   70 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------l--   70 (320)
                      +|.+-..+-.+|.+|+...+|..|.+||++.-.+.|.........+..++..+.+..|+........          +  
T Consensus        40 ~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqa  119 (459)
T KOG4340|consen   40 SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQA  119 (459)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            5666778899999999999999999999999999999888888888888888888877765543322          2  


Q ss_pred             ------------------CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914           71 ------------------NP--QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE  130 (320)
Q Consensus        71 ------------------~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  130 (320)
                                        -|  +.+....+.|.+.++.|++++|++-|+.|++...-++-.-++++.++...+++..|++
T Consensus       120 AIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk  199 (459)
T KOG4340|consen  120 AIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK  199 (459)
T ss_pred             HHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence                              13  4567788999999999999999999999999999999999999999999999999987


Q ss_pred             HH
Q 020914          131 VE  132 (320)
Q Consensus       131 ~~  132 (320)
                      ..
T Consensus       200 ~i  201 (459)
T KOG4340|consen  200 HI  201 (459)
T ss_pred             HH
Confidence            63

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.56  E-value=1.2e-06  Score=71.29  Aligned_cols=89  Identities=19%  Similarity=0.168  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 020914           44 FSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKR  117 (320)
Q Consensus        44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~  117 (320)
                      .|+.|.-++..|+|..|...|..-++..|+.   +.++|.||.+++.+|+|++|...|..+++-.|++   ++++..+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            8999999999999999999999999999985   6899999999999999999999999999998876   688999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 020914          118 VSQLAKDKKRAQEVE  132 (320)
Q Consensus       118 ~~~~~~~~~~A~~~~  132 (320)
                      +...+|+.++|..++
T Consensus       224 ~~~~l~~~d~A~atl  238 (262)
T COG1729         224 SLGRLGNTDEACATL  238 (262)
T ss_pred             HHHHhcCHHHHHHHH
Confidence            999999999996663

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.55  E-value=2.2e-05  Score=63.63  Aligned_cols=98  Identities=22%  Similarity=0.257  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HH
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIK--QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC-IL   85 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~-~~   85 (320)
                      .....+..+...+++..++..+..++.  ..+.....+...|..+...+++.+++..+..++..++.........+. ++
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL  140 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence            344445555555555555555555554  444455555555555555555555555555555555544333333444 55


Q ss_pred             HHccCHHHHHHHHHHHHhhCC
Q 020914           86 EAMEQYDDALSAFQTALQYNP  106 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p  106 (320)
                      ...|+++.|+..|.+++..+|
T Consensus       141 ~~~~~~~~a~~~~~~~~~~~~  161 (291)
T COG0457         141 YELGDYEEALELYEKALELDP  161 (291)
T ss_pred             HHcCCHHHHHHHHHHHHhcCC
Confidence            555555555555555555444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.55  E-value=4.9e-07  Score=70.65  Aligned_cols=92  Identities=18%  Similarity=0.186  Sum_probs=86.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      .+..++.+|..|-.+|-+.-|.-+|.+++.+.|+-+.++..+|.-+...|+|+.|.+.|...++++|.+..+..+.|...
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHH
Q 020914          120 QLAKDKKRAQEV  131 (320)
Q Consensus       120 ~~~~~~~~A~~~  131 (320)
                      ...|++.-|.+-
T Consensus       144 YY~gR~~LAq~d  155 (297)
T COG4785         144 YYGGRYKLAQDD  155 (297)
T ss_pred             eecCchHhhHHH
Confidence            888888877643

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.55  E-value=3.8e-06  Score=60.33  Aligned_cols=89  Identities=17%  Similarity=0.187  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS----AEVSRKIKR  117 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~  117 (320)
                      ..+-.-|.+....|+.+.|++.|.++|.+-|..+.+|.++++++.-.|+.++|++.+.+++++..+.    -.++...|.
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~  123 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL  123 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            4566678899999999999999999999999999999999999999999999999999999996554    346788899


Q ss_pred             HHHHHHHHHHHHH
Q 020914          118 VSQLAKDKKRAQE  130 (320)
Q Consensus       118 ~~~~~~~~~~A~~  130 (320)
                      ++...|+.+.|..
T Consensus       124 lyRl~g~dd~AR~  136 (175)
T KOG4555|consen  124 LYRLLGNDDAARA  136 (175)
T ss_pred             HHHHhCchHHHHH
Confidence            9999999888843

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.54  E-value=7.4e-08  Score=53.02  Aligned_cols=32  Identities=22%  Similarity=0.386  Sum_probs=16.6

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 020914           64 AETTISLNPQWEKGYFRKGCILEAMEQYDDAL   95 (320)
Q Consensus        64 ~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~   95 (320)
                      |++||+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44555555555555555555555555555543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.51  E-value=1.1e-07  Score=52.36  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=31.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 020914           29 LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA   62 (320)
Q Consensus        29 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~   62 (320)
                      +|++||+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4889999999999999999999999999999963

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.46  E-value=3.3e-07  Score=50.67  Aligned_cols=32  Identities=28%  Similarity=0.621  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ  107 (320)
Q Consensus        76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  107 (320)
                      .+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.46  E-value=3.9e-05  Score=69.27  Aligned_cols=223  Identities=13%  Similarity=0.072  Sum_probs=133.8

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIK-QDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNP---   72 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---   72 (320)
                      .+|.+...|..+  +-+..|+..+-+..|..|+. .+|..     ..+|...|..|...|+.+.|...|+++++.+=   
T Consensus       344 Qn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v  421 (835)
T KOG2047|consen  344 QNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV  421 (835)
T ss_pred             cCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence            466777777764  34557778888888888874 46653     36788888888888888888888888887642   


Q ss_pred             -CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           73 -QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------------------AEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        73 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------------------~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                       +-+..|...|..-....+++.|.+..++|+..-...                  ..+|..++.+....|-++.-...  
T Consensus       422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v--  499 (835)
T KOG2047|consen  422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV--  499 (835)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH--
Confidence             236778888888888888888888888887752220                  12344444444444443333222  


Q ss_pred             HhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh---------------HHhhhcChhH
Q 020914          134 IRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---------------VYFLLDKEKT  198 (320)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---------------~~~~lg~~~~  198 (320)
                          .+...++....+.+..+++...       +-...++++.+.|++.+.+-+-               .-+.--+.+.
T Consensus       500 ----YdriidLriaTPqii~NyAmfL-------Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr  568 (835)
T KOG2047|consen  500 ----YDRIIDLRIATPQIIINYAMFL-------EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER  568 (835)
T ss_pred             ----HHHHHHHhcCCHHHHHHHHHHH-------HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence                2222333333344444444333       3455666677777776655442               1111235778


Q ss_pred             HHHhhhhhhccccCcCCccchhhHHHHhhH-H-----HHHHHHHHhch
Q 020914          199 DTEKYAPIVNVDKAFESPHTHGSCFQFLRQ-Y-----ADDSFSSAACL  240 (320)
Q Consensus       199 A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~-~-----A~~~~~~al~~  240 (320)
                      |...|+++++.-|...+ -++-..|..++. +     |++.|++|...
T Consensus       569 aRdLFEqaL~~Cpp~~a-KtiyLlYA~lEEe~GLar~amsiyerat~~  615 (835)
T KOG2047|consen  569 ARDLFEQALDGCPPEHA-KTIYLLYAKLEEEHGLARHAMSIYERATSA  615 (835)
T ss_pred             HHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            88888999887663221 112223333332 2     77777777654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.45  E-value=2.7e-05  Score=63.05  Aligned_cols=129  Identities=25%  Similarity=0.302  Sum_probs=112.7

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHhcCC---CCHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAA-AFLHLVKLNKALADAETTISLNP---QWEKGY   78 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~l~p---~~~~~~   78 (320)
                      .+.....+...|......+++..++..+.+++...+.........+. ++...|++++|+..+.+++..+|   .....+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  170 (291)
T COG0457          91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL  170 (291)
T ss_pred             ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence            35567788999999999999999999999999988887666666666 89999999999999999999887   467778


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           79 FRKGCILEAMEQYDDALSAFQTALQYNPQ-SAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      ..++..+...+++++|+..+.+++...|. ....+..++..+...+.+..+...
T Consensus       171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  224 (291)
T COG0457         171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY  224 (291)
T ss_pred             HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHH
Confidence            88888899999999999999999999999 688888898888888877777554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.45  E-value=2.1e-06  Score=72.72  Aligned_cols=107  Identities=16%  Similarity=0.112  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      +.-.....+.+.+..|  ++.+|.-.|+...+..|.++..+..+|.|+..+|+|++|...+++++..+|+++.++.+++.
T Consensus       164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv  243 (290)
T PF04733_consen  164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV  243 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            3344455555666655  69999999999888888899999999999999999999999999999999999999999999


Q ss_pred             HHHHccCH-HHHHHHHHHHHhhCCCCHHHH
Q 020914           84 ILEAMEQY-DDALSAFQTALQYNPQSAEVS  112 (320)
Q Consensus        84 ~~~~~~~~-~~A~~~~~~al~~~p~~~~~~  112 (320)
                      +...+|+. +.+.++..+.-..+|+++.+-
T Consensus       244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             HHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence            99999999 556678888888899987654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=4.7e-06  Score=64.44  Aligned_cols=92  Identities=11%  Similarity=0.146  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-----KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      +.-+-.-|.-++..|+|++|..-|..||.+.|..+     -.|.++|.++.+++.++.|+....++++++|.+..+....
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            34456678899999999999999999999999753     5788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 020914          116 KRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       116 ~~~~~~~~~~~~A~~~~  132 (320)
                      +.+|..+..++.|++-+
T Consensus       175 Aeayek~ek~eealeDy  191 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDY  191 (271)
T ss_pred             HHHHHhhhhHHHHHHHH
Confidence            99999999999996553

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.43  E-value=4e-07  Score=50.30  Aligned_cols=32  Identities=22%  Similarity=0.406  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQ   73 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   73 (320)
                      .+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.38  E-value=9.9e-07  Score=48.66  Aligned_cols=33  Identities=21%  Similarity=0.555  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS  108 (320)
Q Consensus        76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  108 (320)
                      .+|+.+|.+++.+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            455566666666666666666666666666553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.37  E-value=9.3e-05  Score=56.82  Aligned_cols=116  Identities=12%  Similarity=0.079  Sum_probs=97.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHH
Q 020914           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS-LNPQWEKGYFRKGCILEAMEQYDD   93 (320)
Q Consensus        15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~p~~~~~~~~lg~~~~~~~~~~~   93 (320)
                      ....+.=+.+.+..-..+.+...|. ..-.+.+|.....+|++.+|...|++++. +..+++..+..++++.+.++++..
T Consensus        64 ~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~  142 (251)
T COG4700          64 MALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA  142 (251)
T ss_pred             HHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence            3344445666666667777777774 46678899999999999999999999986 678999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHHHH
Q 020914           94 ALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        94 A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      |...+++..+.+|..  ++....++..+...|++..|+..
T Consensus       143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesa  182 (251)
T COG4700         143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESA  182 (251)
T ss_pred             HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHH
Confidence            999999999999864  66777889999999999988654

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=9e-07  Score=70.14  Aligned_cols=90  Identities=13%  Similarity=0.158  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914           44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (320)
Q Consensus        44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  123 (320)
                      +-.-|..++.-.+|+.|+.+|.++|.++|..+..|.+++.||+++.+++.+.....++++++|+...+++.+|.......
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            44567788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 020914          124 DKKRAQEVEN  133 (320)
Q Consensus       124 ~~~~A~~~~~  133 (320)
                      .+++|+..+.
T Consensus        93 ~~~eaI~~Lq  102 (284)
T KOG4642|consen   93 GYDEAIKVLQ  102 (284)
T ss_pred             cccHHHHHHH
Confidence            9999987643

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.31  E-value=1.6e-06  Score=47.85  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQW   74 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   74 (320)
                      .+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            455556666666666666666666666665543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.31  E-value=3.6e-05  Score=64.96  Aligned_cols=88  Identities=19%  Similarity=0.260  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------H
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQW-----EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA------E  110 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------~  110 (320)
                      +++.+++..+.++.++.+++.+....+.+....     ...+..+|.++..++.|+++++.|++|+++..++.      .
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq  163 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ  163 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence            555555555555555555555555554442211     23444455555555555555555555555432221      2


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 020914          111 VSRKIKRVSQLAKDKKRAQ  129 (320)
Q Consensus       111 ~~~~l~~~~~~~~~~~~A~  129 (320)
                      ++..+|.++...+++++|.
T Consensus       164 vcv~Lgslf~~l~D~~Kal  182 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKAL  182 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHh
Confidence            3444555555555555543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.30  E-value=1.5e-05  Score=67.13  Aligned_cols=123  Identities=16%  Similarity=0.155  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----C---
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----W---   74 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~---   74 (320)
                      .....+|+.+...+.|+++++.|++|+++..++      -.++..+|..|..+.++++|+-+..+|..+-..    +   
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            345668888899999999999999999774332      367889999999999999999999998887432    2   


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914           75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQYN------PQSAEVSRKIKRVSQLAKDKKRAQE  130 (320)
Q Consensus        75 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~~  130 (320)
                         .-+.+.++..+..+|+.-+|.++.+.+.++.      |-.+.....++.+|...|+.+.|..
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~  267 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR  267 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence               2457788888999999999999999988872      2234456667788888888877643

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.30  E-value=2.7e-05  Score=65.88  Aligned_cols=125  Identities=13%  Similarity=0.069  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH-LVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   86 (320)
                      -.|....+...+.+..+.|...|.+|.+..+....+|...|..-+. .++.+.|...|+.+++..|.+...|......+.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            3577777888888889999999999997777778999999999667 556666999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHHHHHH
Q 020914           87 AMEQYDDALSAFQTALQYNPQSA---EVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        87 ~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .+++.+.|...|++++..-|...   .+|..........|+.+....+.
T Consensus        82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~  130 (280)
T PF05843_consen   82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE  130 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999877655   57777777777777777665553

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.28  E-value=5.7e-05  Score=55.88  Aligned_cols=82  Identities=13%  Similarity=0.134  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHH
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE---VSR  113 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  113 (320)
                      .+..++.-|...+..|+|++|++.|+......|-   ...+.+.+|.+|+..+++++|+..+++-++++|.++.   +++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            3678999999999999999999999999999885   4689999999999999999999999999999999864   566


Q ss_pred             HHHHHHHH
Q 020914          114 KIKRVSQL  121 (320)
Q Consensus       114 ~l~~~~~~  121 (320)
                      ..|.++..
T Consensus        89 ~~gL~~~~   96 (142)
T PF13512_consen   89 MRGLSYYE   96 (142)
T ss_pred             HHHHHHHH
Confidence            66665543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=6.7e-05  Score=62.77  Aligned_cols=125  Identities=18%  Similarity=0.074  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCH---HHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-NPQWE---KGYFRKGC   83 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~---~~~~~lg~   83 (320)
                      +.....+-+.+..|++.+|....++.+.-.|.+--++..--.++...|+...-...+++++-. +|+-|   -.+-.++.
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF  183 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF  183 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence            445566777888999999999999999999999988888888999999999999999999977 77764   44555677


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .+...|-|++|.+.-++++++||.+.-+....+.+++..++.+++.++.
T Consensus       184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM  232 (491)
T KOG2610|consen  184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM  232 (491)
T ss_pred             hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence            7889999999999999999999999999999999999999999998763

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.24  E-value=6.1e-05  Score=57.19  Aligned_cols=96  Identities=20%  Similarity=0.184  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----------------------PTLFSNRAAAFLHLVKLNKALADAE   65 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~   65 (320)
                      ..+...|......|+.+.++..+.+++.+-...                      ..+...++..+...|++++|+..++
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            345566777788899999999999999874221                      3556667777778888888888888


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           66 TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        66 ~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  103 (320)
                      +++..+|-+..+|..+-.+|..+|+..+|++.|+++.+
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888877644

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=0.0011  Score=52.85  Aligned_cols=127  Identities=14%  Similarity=0.206  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQD----P--SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE----   75 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----   75 (320)
                      .++.+..-|+.|-...+|..|-..|-++-+..    .  +-+..|...+.||.+. +.++|+.++++++++..+-.    
T Consensus        33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~  111 (288)
T KOG1586|consen   33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTM  111 (288)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHH
Confidence            34556666677777777888877777776442    1  1256677777777655 88999999999998876543    


Q ss_pred             --HHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           76 --KGYFRKGCILEAM-EQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        76 --~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                        .-+..+|.+|..- .++++|+.+|+++-+.....      -.++...+..-...+++.+|+.+++
T Consensus       112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iye  178 (288)
T KOG1586|consen  112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYE  178 (288)
T ss_pred             HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3455788888764 88888999888887764433      2345555666666777777776643

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.22  E-value=8.9e-05  Score=72.38  Aligned_cols=126  Identities=11%  Similarity=-0.049  Sum_probs=56.6

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIK-QDPSNP----TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK   76 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~   76 (320)
                      ++|+++-.|.+---...+.++.++|.+..++||. +++...    ..|..+-+.-..-|.-+.-.+.|++|-+.. +-..
T Consensus      1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~ 1531 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYT 1531 (1710)
T ss_pred             cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHH
Confidence            3444555555544444455555555555555552 232211    122222222222233333444444444432 2233


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      .|..|..+|...+++++|.+.|+..++.......+|..++..+....+-+.|
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHH
Confidence            4445555555555555555555555555555555555555554444443333

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.19  E-value=0.00046  Score=62.63  Aligned_cols=126  Identities=9%  Similarity=0.059  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----------
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----------   73 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----------   73 (320)
                      ..|...|..|-..|+.+.|...|++|...+=..    +.+|+.-|..-....+++.|+...++|...-..          
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            468899999999999999999999999875332    688999999999999999999999999875321          


Q ss_pred             --------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           74 --------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        74 --------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                              ....|...++.....|-++.....|++.+.+.=-.|..-.+.+..+.....++++.+.++
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE  535 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE  535 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                    245688889999999999999999999999999999999999999999898998877765

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.17  E-value=0.00018  Score=63.02  Aligned_cols=116  Identities=13%  Similarity=0.174  Sum_probs=101.3

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914           18 FKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD   93 (320)
Q Consensus        18 ~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~   93 (320)
                      +...+.+.+.+.|+.+|++-|..    +.+|...|..-.++.+...|...+-.||-..|.+. ..-..-.+-.++++++.
T Consensus       377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDR  455 (677)
T KOG1915|consen  377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDR  455 (677)
T ss_pred             HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHH
Confidence            35688999999999999999974    78899999999999999999999999999999754 22233345567899999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENI  134 (320)
Q Consensus        94 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  134 (320)
                      ....|++-|...|.+..+|...+.+...+|+.+.|..++++
T Consensus       456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifel  496 (677)
T KOG1915|consen  456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFEL  496 (677)
T ss_pred             HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999887653

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.17  E-value=0.00065  Score=63.79  Aligned_cols=110  Identities=18%  Similarity=0.158  Sum_probs=96.7

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 020914           17 FFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALS   96 (320)
Q Consensus        17 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~   96 (320)
                      ....++|..|+....+.+...|+..-+...-|.++.++|+.++|..+++..-...+++...+--+-.||..++++++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            45678999999999999999999999999999999999999999988887777788888899999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 020914           97 AFQTALQYNPQSAEVSRKIKRVSQLAKDKKR  127 (320)
Q Consensus        97 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  127 (320)
                      +|++++..+|+ .+....+-.++.+.+.+.+
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~  128 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKK  128 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999 6666666666666665543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.17  E-value=0.0004  Score=56.40  Aligned_cols=78  Identities=15%  Similarity=0.065  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE---VSRK  114 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~  114 (320)
                      +.-+++-|..-...|+|++|+..|+.+....|..   .++...++.++++.+++++|+...++-+++.|+++.   +++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            6889999999999999999999999999998864   678999999999999999999999999999998865   4444


Q ss_pred             HHHH
Q 020914          115 IKRV  118 (320)
Q Consensus       115 l~~~  118 (320)
                      .|.+
T Consensus       114 kgLs  117 (254)
T COG4105         114 KGLS  117 (254)
T ss_pred             HHHH
Confidence            4444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.0015  Score=52.55  Aligned_cols=121  Identities=22%  Similarity=0.153  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQWEK   76 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~   76 (320)
                      ..+..-+..+....+|++|-.++.+|++-..++      +.++-..|.....+..+.++...|++|..+     .|+.+.
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA  111 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA  111 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence            445555666677788999999999888554443      466777888888888999999999998877     355444


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A  128 (320)
                      .-...+-=....-++++|++.|++++.+-..+      .+.+...++++....++.+|
T Consensus       112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea  169 (308)
T KOG1585|consen  112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA  169 (308)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence            44445544556778889999999988874433      23445556667777777766

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.09  E-value=2.8e-06  Score=70.89  Aligned_cols=105  Identities=16%  Similarity=0.159  Sum_probs=85.7

Q ss_pred             HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914           51 FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE  130 (320)
Q Consensus        51 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  130 (320)
                      .+..|.+++|++.|..+|.++|.....|-.+|.++..+++...|+..+..++.++|+.+.-+...|.....+|.+.+|-.
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~  203 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH  203 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999866


Q ss_pred             HHHHhhhhHHHHhHHHHHHHHhhhh
Q 020914          131 VENIRSNVDMVQHLDEFKSEMSEKY  155 (320)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~  155 (320)
                      .+.....++..........++..+.
T Consensus       204 dl~~a~kld~dE~~~a~lKeV~p~a  228 (377)
T KOG1308|consen  204 DLALACKLDYDEANSATLKEVFPNA  228 (377)
T ss_pred             HHHHHHhccccHHHHHHHHHhccch
Confidence            6544444444444333333333333

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=9.9e-05  Score=59.76  Aligned_cols=107  Identities=19%  Similarity=0.198  Sum_probs=90.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIK----QD--PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK   76 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~   76 (320)
                      +|.++.-...+|.+.++-|+.+.|..+|+++-+    ++  .....+..+.+.+|...+++..|...|.+++..||.++.
T Consensus       208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~  287 (366)
T KOG2796|consen  208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV  287 (366)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence            366777788899999999999999999985432    22  223466778888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  109 (320)
                      +-.+.|.|+..+|+..+|++..+.++.+.|...
T Consensus       288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            999999999999999999999999999999764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.02  E-value=1.1e-05  Score=44.37  Aligned_cols=31  Identities=39%  Similarity=0.783  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 020914           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNP  106 (320)
Q Consensus        76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  106 (320)
                      .+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3455566666666666666666666666555

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.98  E-value=1.3e-05  Score=44.06  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQ   73 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   73 (320)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45666666666666666666666666666664

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.00073  Score=54.90  Aligned_cols=125  Identities=14%  Similarity=0.118  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCC--CCHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTIS----LNP--QWEKGYFR   80 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p--~~~~~~~~   80 (320)
                      ..++....++.-.|+|.-.+..+.+.++.+ |..+.....+|.+-.+.|+.+.|..+|+++-+    ++.  .+.-.+.+
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            345667788888999999999999999988 67889999999999999999999999995543    332  34556778


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .+.+|...++|.+|...|.+++..+|.++.+-++-+.|....|+...|++..
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~  309 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQL  309 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999999999999997664

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=0.0015  Score=53.27  Aligned_cols=113  Identities=14%  Similarity=0.115  Sum_probs=83.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 020914           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL----VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ   90 (320)
Q Consensus        15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~   90 (320)
                      .++.+..+++-|.+..+++.+++.  ...+..+|.++..+    ++++.|.-.|+..-...|-.+.....++.|++.+|+
T Consensus       145 qI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~  222 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence            344444444555555555544443  33444455555443    567888888888888778888899999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 020914           91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (320)
Q Consensus        91 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  129 (320)
                      |++|...++.+|..+++++++..++-.+-...|...++.
T Consensus       223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence            999999999999999999999999988877777776553

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.91  E-value=0.0038  Score=58.54  Aligned_cols=104  Identities=20%  Similarity=0.176  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHH----------HhcCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETT----------ISLNPQ----------WEKGYFRKGCILEAMEQYDDALSAFQT  100 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~l~p~----------~~~~~~~lg~~~~~~~~~~~A~~~~~~  100 (320)
                      -..|++.|.-+...++.+.|+++|+++          |.-+|.          ++..|...|+.+...|+.+.|+..|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            467899999999999999999999875          223442          456788889999999999999999988


Q ss_pred             HHhh---------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH
Q 020914          101 ALQY---------------------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL  144 (320)
Q Consensus       101 al~~---------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  144 (320)
                      |-..                     ...+..+.+.+++.|+..|+..+|..++.....+..+..+
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRl 1002 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRL 1002 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7543                     2345667889999999999999999887766666555443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.91  E-value=4.1e-05  Score=67.02  Aligned_cols=118  Identities=15%  Similarity=0.102  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQA-IKQDPS--------NPTLFSNRAAAFLHLVKLNKALADAETTISL-----   70 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----   70 (320)
                      +.+.+++.+...++..|+|..|.+.+... +...|.        ..-+|.++|.+++++|.|.-+..+|.+||+.     
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999987643 223333        2346789999999999999999999999961     


Q ss_pred             ----CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914           71 ----NP---------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (320)
Q Consensus        71 ----~p---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  122 (320)
                          .|         ..-...|+.|..|...|++-.|.++|.++++....++..|..++.+-...
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                12         23568999999999999999999999999999999999999999876543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.00021  Score=59.75  Aligned_cols=92  Identities=11%  Similarity=0.115  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLN---PQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  116 (320)
                      +.-+-.-|+-|++-.+|..|+.+|.+.|+-.   |+ ++..|.+++-+...+|+|..|+....++++++|.+..+++.-+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            5667788999999999999999999999874   33 4678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 020914          117 RVSQLAKDKKRAQEVE  132 (320)
Q Consensus       117 ~~~~~~~~~~~A~~~~  132 (320)
                      .++..+..+..|....
T Consensus       161 kc~~eLe~~~~a~nw~  176 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWC  176 (390)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988776553

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.00095  Score=55.25  Aligned_cols=122  Identities=20%  Similarity=0.180  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH-HH--H
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR-KG--C   83 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-lg--~   83 (320)
                      .+.-+..|......|++.+|...|..++...|++..+...++.||...|+.+.|...+...=.-..  ...+.. .+  .
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~l~a~i~  211 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHGLQAQIE  211 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHHHHHHHH
Confidence            344567788899999999999999999999999999999999999999999988777654311111  111111 11  2


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      .+.+.....+. ..+++.+..+|++.++...++..+...|+.+.|.+.
T Consensus       212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~  258 (304)
T COG3118         212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEH  258 (304)
T ss_pred             HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            33333333322 446677778888888888888888888888888765

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.79  E-value=3.2e-05  Score=67.65  Aligned_cols=90  Identities=16%  Similarity=0.118  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914           44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (320)
Q Consensus        44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  123 (320)
                      .-+-+...+.-++++.|+..|.+||+++|+++..+-+++.++...++|..|+..+.+|++++|....+|...|......+
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            44556777788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 020914          124 DKKRAQEVEN  133 (320)
Q Consensus       124 ~~~~A~~~~~  133 (320)
                      .+.+|...++
T Consensus        87 ~~~~A~~~l~   96 (476)
T KOG0376|consen   87 EFKKALLDLE   96 (476)
T ss_pred             HHHHHHHHHH
Confidence            9999876543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=0.0017  Score=52.87  Aligned_cols=240  Identities=10%  Similarity=0.024  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   88 (320)
                      .++.. +-++..|+|..++..-.+.-... ...+..+.+..+|..+|++..-+......-   .....+...++.....-
T Consensus        11 ~LF~i-Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e   85 (299)
T KOG3081|consen   11 ELFNI-RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELE   85 (299)
T ss_pred             hHHHH-HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCc
Confidence            34443 56778899999988877754433 678888899999999999876655443321   12233444455555555


Q ss_pred             cCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHH
Q 020914           89 EQYDDALSAFQTALQYNPQ--SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS  166 (320)
Q Consensus        89 ~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (320)
                      ++.++-+.....-+.....  +......-+.++...+++++|.........++.           .....++......++
T Consensus        86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~-----------~Al~VqI~lk~~r~d  154 (299)
T KOG3081|consen   86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEA-----------AALNVQILLKMHRFD  154 (299)
T ss_pred             chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHH-----------HHHHHHHHHHHHHHH
Confidence            5555544444443332222  222333344666666777777655432111111           111122222222333


Q ss_pred             HHHHHHHHHHHhHhhcccc-ChhHHh----hhcChhHHHHhhhhhhc-cccCcCCccchhhHHHHhhHH--HHHHHHHHh
Q 020914          167 FVVETMETAVKSWHETSKV-DAKVYF----LLDKEKTDTEKYAPIVN-VDKAFESPHTHGSCFQFLRQY--ADDSFSSAA  238 (320)
Q Consensus       167 ~a~~~~~~a~~~~~~~~~~-~~~~~~----~lg~~~~A~~~~~~a~~-~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al  238 (320)
                      .|.+..++....-+++.-. ...+|.    .-++.+.|.-.|+..-+ ..|......-...|...+++|  |....+.|+
T Consensus       155 ~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL  234 (299)
T KOG3081|consen  155 LAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL  234 (299)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence            3333333333222221111 011222    22457777777777776 555543333356677788889  999999999


Q ss_pred             chhCCCCCCChhHhhhcccccccccCcccch
Q 020914          239 CLVAPKSIISYPQVWRGQGLRKWRHSQQDGF  269 (320)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  269 (320)
                      ..     ++.+|+++.|+-.+-..+|...+.
T Consensus       235 ~k-----d~~dpetL~Nliv~a~~~Gkd~~~  260 (299)
T KOG3081|consen  235 DK-----DAKDPETLANLIVLALHLGKDAEV  260 (299)
T ss_pred             hc-----cCCCHHHHHHHHHHHHHhCCChHH
Confidence            87     778899999999888888888554

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.78  E-value=0.00076  Score=52.33  Aligned_cols=100  Identities=24%  Similarity=0.203  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-EKGYFRKGC   83 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~   83 (320)
                      .+-..++..+...|++++|+..++.++....+.   +-+-..+|.+...+|++++|+..++....  ++. +..-..+|+
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGD  167 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGD  167 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhh
Confidence            355677888888899999999998888543322   35567788889999999999888765422  221 233556799


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~  109 (320)
                      ++...|+-++|+..|++++..+++.+
T Consensus       168 ill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         168 ILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHcCchHHHHHHHHHHHHccCChH
Confidence            99999999999999999998875443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.78  E-value=0.00013  Score=64.51  Aligned_cols=107  Identities=27%  Similarity=0.309  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL---VKLNKALADAETTISLNPQWEKGYFR   80 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~   80 (320)
                      |..++..+..|+-.+..+....|+..|.+++...|.....+.+++.++.+.   |+.-.|+..+..|++++|...++|+.
T Consensus       371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~  450 (758)
T KOG1310|consen  371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR  450 (758)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence            566777888888888889999999999999999999999999999999876   46678999999999999999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 020914           81 KGCILEAMEQYDDALSAFQTALQYNPQSAE  110 (320)
Q Consensus        81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  110 (320)
                      ++.++..++++.+|+++...+....|.+..
T Consensus       451 la~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  451 LARALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            999999999999999999888888886544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.77  E-value=9.4e-05  Score=66.21  Aligned_cols=106  Identities=21%  Similarity=0.220  Sum_probs=94.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Q 020914           14 GNEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD   92 (320)
Q Consensus        14 g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~   92 (320)
                      |......|+...|+.|+..|+...|... ....++|.+..+.|-...|-..+.++|.++...+-.++.+|.++..+.+.+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~  693 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS  693 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence            4444568999999999999999988653 568899999999999999999999999999889999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           93 DALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        93 ~A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      .|++.|+.|++++|+++.+-..+-.+.
T Consensus       694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  694 GALEAFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            999999999999999999887776554

>PRK10941 hypothetical protein; Provisional

Probab=97.74  E-value=0.00056  Score=57.04  Aligned_cols=78  Identities=17%  Similarity=0.198  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  118 (320)
                      .....++-.+|...++++.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|+..++..++..|+++.+-.....+
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            367888999999999999999999999999999999999999999999999999999999999999999876544443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.00051  Score=55.12  Aligned_cols=90  Identities=12%  Similarity=0.129  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISL--------NPQW----------EKGYFRKGCILEAMEQYDDALSAFQTAL  102 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al  102 (320)
                      ..++...|+-++++|+|.+|...|+.|+-.        .|..          ...+.+.++|+...|+|-++++.....|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            578999999999999999999999998753        3443          3578999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914          103 QYNPQSAEVSRKIKRVSQLAKDKKRAQE  130 (320)
Q Consensus       103 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~  130 (320)
                      +.+|++..+++..+......-+..+|.+
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~  285 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKA  285 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHH
Confidence            9999999999999998876666666643

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.0055  Score=49.06  Aligned_cols=102  Identities=15%  Similarity=0.122  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCC------
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHL-VKLNKALADAETTISLNPQW------   74 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~------   74 (320)
                      ..+...+++ ++.++.++|+.+++++|++..+-      +.-+..+|.+|..- .++++||.+|+++-......      
T Consensus        75 t~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA  153 (288)
T KOG1586|consen   75 TTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA  153 (288)
T ss_pred             HHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence            334444444 44558999999999999886554      34456888888766 89999999999998765432      


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 020914           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE  110 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  110 (320)
                      -.++..-++.-..+++|.+|+..|++.....-++.-
T Consensus       154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L  189 (288)
T KOG1586|consen  154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL  189 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            356777788888899999999999999887666644

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.69  E-value=0.00083  Score=47.23  Aligned_cols=92  Identities=21%  Similarity=0.345  Sum_probs=69.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHhcCCCCHHHH
Q 020914           13 KGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVK-----------LNKALADAETTISLNPQWEKGY   78 (320)
Q Consensus        13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~l~p~~~~~~   78 (320)
                      ++..++..|++-+|++..+..+..++++.   ..+..-|.++..+..           .-.|+++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46778899999999999999998887765   566777887766643           2367778888888888777777


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           79 FRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        79 ~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      +.+|.-+-...-|++++.-.+++|.+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            77777766666777777777777665

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.69  E-value=0.0027  Score=45.06  Aligned_cols=94  Identities=18%  Similarity=0.286  Sum_probs=71.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------C
Q 020914           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPS------------NPTLFSNRAAAFLHLVKLNKALADAETTISL-------N   71 (320)
Q Consensus        11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-------~   71 (320)
                      ...|.-.+..|-|++|...+.+|.+....            ++-++-.++.++..+|+|++++..-+++|..       +
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~   92 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH   92 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence            34455567789999999999999976432            2467888999999999999988888888764       4


Q ss_pred             CCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           72 PQWE----KGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        72 p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      .+..    .+-+++|..+..+|+.++|+..|+++-+.
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            4543    45577899999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.67  E-value=0.0028  Score=62.55  Aligned_cols=114  Identities=11%  Similarity=0.002  Sum_probs=57.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccC
Q 020914           13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFRKGCILEAMEQ   90 (320)
Q Consensus        13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~~~   90 (320)
                      +..+|...+++++|.++++..++...+....|...|..++..++-+.|...+.+||+.-|.  +.+..-.-|++-++.|+
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence            3444444555555555555555544444555555555555555555555555555555554  44444445555555555


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 020914           91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK  126 (320)
Q Consensus        91 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  126 (320)
                      .+.+...|+-.|.-.|.-.+.|.-+.......|..+
T Consensus      1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred             chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH
Confidence            555555555555555555555544444433333333

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.64  E-value=0.00011  Score=39.80  Aligned_cols=31  Identities=23%  Similarity=0.447  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQ  107 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  107 (320)
                      +++.+|.++..+|++++|++.|++.++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4555555555555555555555555555554

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.019  Score=46.40  Aligned_cols=196  Identities=13%  Similarity=0.103  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFRKGCILEAMEQYDDALSAFQTALQYN-----PQSA  109 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~  109 (320)
                      +..|..-+.+|+..+++++|..++.+|++-..++      +.++-+.|.+...+..+.|+...|++|..+.     |+.+
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            5678888999999999999999999999654443      4677788889999999999999999998873     2222


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh
Q 020914          110 -EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (320)
Q Consensus       110 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~  188 (320)
                       .+...-+.+. ...+.+.|+.+++....+-....-.....+++...++++.....+.++-..+.+-.....+.-.....
T Consensus       111 AmaleKAak~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~  189 (308)
T KOG1585|consen  111 AMALEKAAKAL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ  189 (308)
T ss_pred             HHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence             2233333332 23456666666532222111111111222333334444444333333333222221111111111111


Q ss_pred             ---------HHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH---HHHHHHHHh
Q 020914          189 ---------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY---ADDSFSSAA  238 (320)
Q Consensus       189 ---------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~---A~~~~~~al  238 (320)
                               ++....++..|...++..-++..- .....-..+-.+++-|   -.+.+.+.+
T Consensus       190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f-~~sed~r~lenLL~ayd~gD~E~~~kvl  250 (308)
T KOG1585|consen  190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF-LKSEDSRSLENLLTAYDEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc-cChHHHHHHHHHHHHhccCCHHHHHHHH
Confidence                     445556888888887776665322 1111122233344445   566666666

>PRK10941 hypothetical protein; Provisional

Probab=97.62  E-value=0.00099  Score=55.60  Aligned_cols=77  Identities=16%  Similarity=0.124  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      -+.++=.++...++++.|+.+.+..+.++|+++.-+..+|.+|.++|.+..|..+++..++..|+++.+-....++.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            45566678899999999999999999999999999999999999999999999999999999999998876665554

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.61  E-value=0.00037  Score=57.79  Aligned_cols=74  Identities=22%  Similarity=0.163  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 020914           44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR  117 (320)
Q Consensus        44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  117 (320)
                      -.+.|.-..+.|+.++|...|+.|+.+.|++++++...|......++.-+|-.+|-+||.++|.+.++..+..+
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            34445556678888999999999999999999999999988888888888999999999999988888776654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.61  E-value=0.0018  Score=54.91  Aligned_cols=137  Identities=9%  Similarity=-0.036  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA-MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  120 (320)
                      -+|..+.....+.+..+.|...|.+|++..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|......+.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            3678888888889999999999999997777789999999999777 566666999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhh
Q 020914          121 LAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE  181 (320)
Q Consensus       121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~  181 (320)
                      ..++.+.+..+++..-.  .... ......++..+.+.....|......+..+++.+.++.
T Consensus        82 ~~~d~~~aR~lfer~i~--~l~~-~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   82 KLNDINNARALFERAIS--SLPK-EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HTT-HHHHHHHHHHHCC--TSSC-HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HhCcHHHHHHHHHHHHH--hcCc-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            99999998777542211  1000 0002223333444444445555555555555555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.60  E-value=0.00053  Score=62.39  Aligned_cols=113  Identities=16%  Similarity=0.148  Sum_probs=91.5

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHH
Q 020914           20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKGCILEAMEQYDDAL   95 (320)
Q Consensus        20 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~~~~~~A~   95 (320)
                      ..+.+.|.+.+.......|+.+-..+..|.++...|+.++|++.|++++......    .-+++.+|.++..+.+|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            4577889999999999999999999999999999999999999999998644432    346888999999999999999


Q ss_pred             HHHHHHHhhCCCCHH-HHHHHHHHHHHHHHH-------HHHHHHH
Q 020914           96 SAFQTALQYNPQSAE-VSRKIKRVSQLAKDK-------KRAQEVE  132 (320)
Q Consensus        96 ~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~-------~~A~~~~  132 (320)
                      .+|.+.++.+.-... ..+..|.++...++.       ++|.++.
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~  370 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELF  370 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHH
Confidence            999999997665433 344556777777777       6665553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.60  E-value=0.0015  Score=61.45  Aligned_cols=123  Identities=15%  Similarity=0.042  Sum_probs=100.4

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|+...+....|.++++.|+.++|..+++..-...+++...+.-+-.||..+|++++|..+|++++..+|+ .+..+.+=
T Consensus        39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lF  117 (932)
T KOG2053|consen   39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLF  117 (932)
T ss_pred             CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHH
Confidence            36667788888999999999999999888877888889999999999999999999999999999999999 88899999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAE-VSRKIKRVSQLAKDKK  126 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~  126 (320)
                      .+|.+.+.|.+-.+.--+.-+..|+.+. .|..++.+.......+
T Consensus       118 mayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~  162 (932)
T KOG2053|consen  118 MAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN  162 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence            9999999988755555555567888765 3554554444433333

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.60  E-value=0.0011  Score=58.77  Aligned_cols=117  Identities=9%  Similarity=0.062  Sum_probs=92.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--------------------
Q 020914           14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--------------------   73 (320)
Q Consensus        14 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--------------------   73 (320)
                      -....+..+.+.-++.-.+||+++|+.+.+|..+|.=  ......+|...|+++++....                    
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~  252 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR  252 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence            3455678899999999999999999999999998852  133456677777776654210                    


Q ss_pred             -----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           74 -----WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--SAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        74 -----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                           ...+...+|.|..++|+.+||++.|+..++.+|.  +..++.+|..++...+.+.++..+.
T Consensus       253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL  318 (539)
T PF04184_consen  253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL  318 (539)
T ss_pred             cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence                 1234577899999999999999999999998875  4568999999999999999987764

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.58  E-value=0.0015  Score=59.53  Aligned_cols=76  Identities=16%  Similarity=0.152  Sum_probs=40.1

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHHHHHHHHHHH
Q 020914           56 KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA----EVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        56 ~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      ..+.|.+.++...+..|+.+-..+..|.++...|+.++|++.|++++.....-.    -++..++.++....+|++|...
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~  327 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY  327 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence            445555555555555555555555555555555555555555555553222221    2344555555555555555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.57  E-value=0.0098  Score=51.80  Aligned_cols=114  Identities=14%  Similarity=0.022  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-hcCCCCHHHHHH
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQ----DPSNPTLFSNRAAAFLH---LVKLNKALADAETTI-SLNPQWEKGYFR   80 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al-~l~p~~~~~~~~   80 (320)
                      ...++-..|....+|+.-++..+..-.+    -++...+.+.+|-++.+   .|+.++|+..+..++ ...+.+++.+-.
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            3444445666667777666666655444    33456667777777777   788888888887744 445567778888


Q ss_pred             HHHHHHHc---------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914           81 KGCILEAM---------EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (320)
Q Consensus        81 lg~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  123 (320)
                      .|.+|..+         ...++|+..|.++.+++|+. ..=++++.++...|
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g  273 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAG  273 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcC
Confidence            88777542         34677888888888887543 33344444444444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.55  E-value=0.00017  Score=40.15  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           78 YFRKGCILEAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        78 ~~~lg~~~~~~~~~~~A~~~~~~al~  103 (320)
                      |.++|.+|..+|++++|+++|+++|.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55566666666666666666666443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.54  E-value=0.00016  Score=39.19  Aligned_cols=31  Identities=16%  Similarity=0.205  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQ   73 (320)
Q Consensus        43 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   73 (320)
                      +++.+|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4556666666666666666666666666664

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.51  E-value=0.00055  Score=56.77  Aligned_cols=80  Identities=15%  Similarity=0.162  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      .+..-...+.-....|+.++|...|+.|+.+.|.+++++...|.....-++.-+|-.+|-+||.++|.+.+++.+++...
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            34455566677788999999999999999999999999999999999999999999999999999999999999887553

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.49  E-value=0.0012  Score=40.12  Aligned_cols=39  Identities=10%  Similarity=0.117  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      .++.+|..+.++|+|++|..+.+.+|++.|++.++....
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            455666666666666666666666666666666655433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.46  E-value=0.0051  Score=46.59  Aligned_cols=111  Identities=13%  Similarity=-0.025  Sum_probs=88.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      +..-...++....+-...++.+++...+...-.+.|..+++-..-|..+...|+|.+|+..++.+..-.|..+.+--.++
T Consensus         6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA   85 (160)
T PF09613_consen    6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA   85 (160)
T ss_pred             cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            44556788888889999999999999999888899999999999999999999999999999999998999998888899


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      .|+..+|+.+==.. -+.+++-.+ ++.+....
T Consensus        86 ~CL~~~~D~~Wr~~-A~evle~~~-d~~a~~Lv  116 (160)
T PF09613_consen   86 LCLYALGDPSWRRY-ADEVLESGA-DPDARALV  116 (160)
T ss_pred             HHHHHcCChHHHHH-HHHHHhcCC-ChHHHHHH
Confidence            99999888764322 223444333 44444333

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.42  E-value=0.0013  Score=49.76  Aligned_cols=63  Identities=21%  Similarity=0.209  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS   69 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   69 (320)
                      ..++..++..+...|++++|+..+++++..+|.+..+|..+-.+|...|+..+|+..|+++..
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            456777888899999999999999999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.41  E-value=0.00089  Score=40.64  Aligned_cols=43  Identities=16%  Similarity=0.119  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      +.++.+|..+.++|+|++|..+.+.+|++.|+|.++......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4567888888888888888888888888888888776555443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.39  E-value=0.00031  Score=39.04  Aligned_cols=25  Identities=16%  Similarity=0.197  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH
Q 020914           44 FSNRAAAFLHLVKLNKALADAETTI   68 (320)
Q Consensus        44 ~~~lg~~~~~~g~~~~A~~~~~~al   68 (320)
                      +.++|.+|..+|+|++|+++|+++|
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.38  E-value=0.026  Score=53.27  Aligned_cols=96  Identities=14%  Similarity=0.133  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH----------HhcCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQA----------IKQDPS----------NPTLFSNRAAAFLHLVKLNKALADAETTI   68 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~a----------l~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al   68 (320)
                      .+++.+..+-..++.+.|+++|+++          |.-+|.          ++..|..-|.-+...|+.+.|+.+|..|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            4777888888899999999999987          222343          35677778888999999999999998875


Q ss_pred             hcC---------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           69 SLN---------------------PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        69 ~l~---------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      .-.                     ..+-.+-|.+|..|...|++.+|+..|.+|-..
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            432                     456678899999999999999999988876554

>smart00028 TPR Tetratricopeptide repeats

Probab=97.36  E-value=0.00038  Score=37.00  Aligned_cols=31  Identities=26%  Similarity=0.566  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQ  107 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  107 (320)
                      ++..+|.++..+|++++|+..|+++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4555555666666666666666655555553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.35  E-value=0.052  Score=47.03  Aligned_cols=91  Identities=16%  Similarity=0.140  Sum_probs=75.9

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 020914           28 ALYTQAIKQDPSNPTLFSNRAAAFLHLVK------------LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL   95 (320)
Q Consensus        28 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~   95 (320)
                      ..+++.+.-+|.+..+|..+...--.+-.            .+.-+..|++||+.+|++...+..+-.+.....+-++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45778888899999999988876655533            457788999999999999999988888888888888889


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHH
Q 020914           96 SAFQTALQYNPQSAEVSRKIKRV  118 (320)
Q Consensus        96 ~~~~~al~~~p~~~~~~~~l~~~  118 (320)
                      +-+++++..+|++...|...-..
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~  108 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDF  108 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHH
Confidence            99999999999999988765543

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.31  E-value=0.0052  Score=54.48  Aligned_cols=95  Identities=14%  Similarity=0.133  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHH
Q 020914           24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ-YDDALSAFQTAL  102 (320)
Q Consensus        24 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al  102 (320)
                      ..-...|+.|+...+.++..|........+.+.+.+--..|.+++..+|+++..|..-|.=.+..+. .+.|...|.++|
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            3456779999999999999999998888888889999999999999999999999998887777776 999999999999


Q ss_pred             hhCCCCHHHHHHHHHH
Q 020914          103 QYNPQSAEVSRKIKRV  118 (320)
Q Consensus       103 ~~~p~~~~~~~~l~~~  118 (320)
                      +.+|+++..|...-.+
T Consensus       168 R~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  168 RFNPDSPKLWKEYFRM  183 (568)
T ss_pred             hcCCCChHHHHHHHHH
Confidence            9999999988765443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.31  E-value=0.0047  Score=42.38  Aligned_cols=64  Identities=16%  Similarity=0.240  Sum_probs=30.5

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHH
Q 020914           61 LADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKD  124 (320)
Q Consensus        61 ~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~  124 (320)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+|+.  ..+...+-.+...+|.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            344455555555555555555555555555555555555555555443  3344444444444443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.22  E-value=0.003  Score=43.30  Aligned_cols=75  Identities=17%  Similarity=0.154  Sum_probs=55.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914           26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW--EKGYFRKGCILEAMEQYDDALSAFQT  100 (320)
Q Consensus        26 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~  100 (320)
                      .+..+++++..+|++..+.+.+|..+...|++++|++.+-.+++.+|++  ..+.-.+=.++..+|.-+.-...|++
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR   83 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR   83 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            4677889999999999999999999999999999999999999999876  55555555555555554444444443

>smart00028 TPR Tetratricopeptide repeats

Probab=97.21  E-value=0.00068  Score=35.95  Aligned_cols=32  Identities=28%  Similarity=0.423  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQ   73 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   73 (320)
                      .++..+|.++..+|++++|+..++++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            34556666666666666666666666666554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.19  E-value=0.022  Score=49.93  Aligned_cols=121  Identities=16%  Similarity=0.159  Sum_probs=100.2

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--C-C---
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLFSNRAAAFLHLVKLNKALADAETTISL--N-P---   72 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~-p---   72 (320)
                      ....+..|...+.+....|+++.|...+.++...++.    .+.+.+..+......|+..+|+..++..+..  . +   
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            3456788999999999999999999999999886522    4788999999999999999999999888871  1 0   


Q ss_pred             ----------------------------CCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914           73 ----------------------------QWEKGYFRKGCILEAM------EQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (320)
Q Consensus        73 ----------------------------~~~~~~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  118 (320)
                                                  ..+.++..+|.-...+      +..++++..|+++++++|+...+|..+|..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                        0135677777777777      889999999999999999999999999887


Q ss_pred             HHHHH
Q 020914          119 SQLAK  123 (320)
Q Consensus       119 ~~~~~  123 (320)
                      +...-
T Consensus       302 ~~~~~  306 (352)
T PF02259_consen  302 NDKLL  306 (352)
T ss_pred             HHHHH
Confidence            75443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.08  E-value=0.00071  Score=59.56  Aligned_cols=80  Identities=14%  Similarity=0.198  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIK-Q--------DP---------SNPTLFSNRAAAFLHLVKLNKALADAETTIS   69 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-~--------~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   69 (320)
                      -.|.++|.+++..|.|.-++.+|.+|++ .        .|         ...++.|+.|..|...|+.-.|.++|.+++.
T Consensus       284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            3567999999999999999999999995 1        12         1358899999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHH
Q 020914           70 LNPQWEKGYFRKGCILEA   87 (320)
Q Consensus        70 l~p~~~~~~~~lg~~~~~   87 (320)
                      ....+|..|.+++.|...
T Consensus       364 vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  364 VFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHhcCcHHHHHHHHHHHH
Confidence            999999999999998764

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.07  E-value=0.034  Score=45.72  Aligned_cols=198  Identities=12%  Similarity=0.092  Sum_probs=103.2

Q ss_pred             ccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-----CCH-HHHHHHHHHHHHHH
Q 020914           54 LVKLNKALADAETTISLNPQW----EKGYFRKGCILEAMEQYDDALSAFQTALQYNP-----QSA-EVSRKIKRVSQLAK  123 (320)
Q Consensus        54 ~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~-~~~~~l~~~~~~~~  123 (320)
                      ..+.++|+..|++++++.|..    ..++-++-.+++++++|++-.+.|.+.|..-.     +.. .....+-..-...+
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            347788888888888888764    34667777788888888888888777765311     111 11111111111111


Q ss_pred             HHHHHHHHHHH-hhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc------------cc---Ch
Q 020914          124 DKKRAQEVENI-RSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS------------KV---DA  187 (320)
Q Consensus       124 ~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~------------~~---~~  187 (320)
                      +.+-..++++. ..++..+ ....+.-.....+|..+..++.+....+...+-...+...-            .+   .-
T Consensus       120 ~m~LLQ~FYeTTL~ALkdA-KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI  198 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDA-KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI  198 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhh-hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence            22222122110 0011100 00111112233467777777777666666655443333211            00   11


Q ss_pred             hHHhhhcChhHHHHhhhhhhccccCcCCccchhhH-------HHHhhHH--HHHHHHHHhchhCCCCCCChhHh
Q 020914          188 KVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSC-------FQFLRQY--ADDSFSSAACLVAPKSIISYPQV  252 (320)
Q Consensus       188 ~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~-------~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~  252 (320)
                      .+|..+.+-++-...|++++.+......+...|.+       ...-|+|  |-..|=.|.+-.....+|.-...
T Consensus       199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttC  272 (440)
T KOG1464|consen  199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTC  272 (440)
T ss_pred             hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHH
Confidence            16667777777778889999887665544445544       3344556  66666666655555555655444

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.05  E-value=0.02  Score=46.26  Aligned_cols=91  Identities=19%  Similarity=0.118  Sum_probs=68.5

Q ss_pred             HcCCHHHHHHHHHHHHhc----CCC---CHHHHHHHHHHHHHccCHH-------HHHHHHHHHHhcC--CC----CHHHH
Q 020914           19 KAGNYLKAAALYTQAIKQ----DPS---NPTLFSNRAAAFLHLVKLN-------KALADAETTISLN--PQ----WEKGY   78 (320)
Q Consensus        19 ~~g~~~~A~~~~~~al~~----~p~---~~~~~~~lg~~~~~~g~~~-------~A~~~~~~al~l~--p~----~~~~~   78 (320)
                      ....+++|++.|.-|+-.    .+.   -+.++..+|++|..+|+.+       +|+..|++++...  |.    ...+.
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            345788999999888732    222   2678999999999999955       5566666666543  22    25788


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914           79 FRKGCILEAMEQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  109 (320)
                      +.+|.+..++|++++|+..|.+++.....+.
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999998654443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.01  E-value=0.022  Score=42.44  Aligned_cols=92  Identities=11%  Similarity=-0.094  Sum_probs=78.9

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      +++.-...+......-...++.+++...+...-.+.|+.+++-..-|..+...|+|.+|+..++....-.+..+-+--.+
T Consensus         5 Cs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~   84 (153)
T TIGR02561         5 CSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL   84 (153)
T ss_pred             CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence            34555667777788888899999999999888888999999999999999999999999999999998888888888888


Q ss_pred             HHHHHHccCHHH
Q 020914           82 GCILEAMEQYDD   93 (320)
Q Consensus        82 g~~~~~~~~~~~   93 (320)
                      +.|+..+|+.+=
T Consensus        85 A~CL~al~Dp~W   96 (153)
T TIGR02561        85 ALCLNAKGDAEW   96 (153)
T ss_pred             HHHHHhcCChHH
Confidence            999988888753

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.059  Score=45.73  Aligned_cols=130  Identities=12%  Similarity=0.048  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   79 (320)
                      |.+.-++..--..++..|+...-...+++.+-. +|+.   .-+.-.++-++...|-|++|.+.-++++++||.+..+.+
T Consensus       134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H  213 (491)
T KOG2610|consen  134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH  213 (491)
T ss_pred             chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence            566667777778889999999999999999977 7766   344455677788999999999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           80 RKGCILEAMEQYDDALSAFQTALQYNPQS----AEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                      .++.++...|++.++.+...+.-..=...    ..-|-..+.++...+.++.|++++.
T Consensus       214 a~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  214 AKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             HHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            99999999999999998877643221110    0112234455566678888877754

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.97  E-value=0.19  Score=42.62  Aligned_cols=100  Identities=14%  Similarity=0.056  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CCCC----------HHHHHHHHHHHHHccCHH---HHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAG-NYLKAAALYTQAIKQ----DPSN----------PTLFSNRAAAFLHLVKLN---KALADAETTI   68 (320)
Q Consensus         7 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~----~p~~----------~~~~~~lg~~~~~~g~~~---~A~~~~~~al   68 (320)
                      ++.+++.|...+..+ ++++|+..+++|+++    .+..          ..++..++.+|...+.++   +|....+.+-
T Consensus        35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~  114 (278)
T PF08631_consen   35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE  114 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            467899999999999 999999999999877    2211          367888899998888765   4555555565


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 020914           69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP  106 (320)
Q Consensus        69 ~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  106 (320)
                      .-.|+.+..+...=.+....++.+++.+.+.+++.--+
T Consensus       115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            66788888876666666668999999999999998655

It is also involved in sporulation [].

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.90  E-value=0.0017  Score=51.67  Aligned_cols=57  Identities=25%  Similarity=0.492  Sum_probs=34.3

Q ss_pred             HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914           52 LHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS  108 (320)
Q Consensus        52 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  108 (320)
                      ...++.+.|.+.|.+++.+-|+....|+++|....+.|+++.|.+.|++.++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344555566666666666666666666666666666666666666666666666554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.87  E-value=0.26  Score=42.81  Aligned_cols=194  Identities=14%  Similarity=0.054  Sum_probs=124.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHH
Q 020914           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSN--PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-KGYFRKGCILEA   87 (320)
Q Consensus        11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~lg~~~~~   87 (320)
                      ...|.+....|+-..|...-.++-.+-..+  +-++..-+.+-..-|+++.|.+-|+-.+. +|+.- -.+..+-.--..
T Consensus        88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr  166 (531)
T COG3898          88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR  166 (531)
T ss_pred             HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence            445677777889999999988887544333  44555667778888999999999987765 55322 122222223346


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHH--HHHHHHhhhhcchhhhhhHH
Q 020914           88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD--EFKSEMSEKYGAEECWKHVF  165 (320)
Q Consensus        88 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  165 (320)
                      +|..+-|+.+-+.+-...|.-+.++...-......|+++.|+.+..-+..........  .....+...-.        .
T Consensus       167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA--------~  238 (531)
T COG3898         167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA--------M  238 (531)
T ss_pred             cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH--------H
Confidence            8999999999999999999999998888777888899999998865433322221110  11111111000        0


Q ss_pred             HHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCc
Q 020914          166 SFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (320)
Q Consensus       166 ~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~  213 (320)
                      .........|...-..+.++.|.          .++..|+..++-..++.+.+..|..
T Consensus       239 s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP  296 (531)
T COG3898         239 SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP  296 (531)
T ss_pred             HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence            00111122233333445555554          7888888888888888888887754

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.0029  Score=53.57  Aligned_cols=119  Identities=24%  Similarity=0.290  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------C--------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDP-----------S--------NPTLFSNRAAAFLHLVKLNKALADAETTI   68 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al   68 (320)
                      ....+.|...+..+++..|..-|.+++..-.           +        -.....+++.+-...+.+..|+.....++
T Consensus       223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~  302 (372)
T KOG0546|consen  223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL  302 (372)
T ss_pred             hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence            4455677889999999999999999985311           1        12456778899999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 020914           69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK  126 (320)
Q Consensus        69 ~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  126 (320)
                      ..+++...+++.+|+.+..+.++++|++.++.+....|++......+..+.....++.
T Consensus       303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~  360 (372)
T KOG0546|consen  303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN  360 (372)
T ss_pred             ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence            9999999999999999999999999999999999999999988777766554444433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.83  E-value=0.035  Score=43.51  Aligned_cols=96  Identities=19%  Similarity=0.133  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHH----HH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNP--QWEK----GY   78 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~----~~   78 (320)
                      .++..+|..|.+.|++++|++.|.++.+.....   ..++.++-.+....+++........++-.+-.  +++.    ..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            456666666666666666666666665543221   35556666666666666666666666654422  2222    12


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           79 FRKGCILEAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        79 ~~lg~~~~~~~~~~~A~~~~~~al~  103 (320)
                      ..-|..+...++|.+|.+.|-.++.
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCc
Confidence            2235555556666666666655543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.82  E-value=0.019  Score=40.49  Aligned_cols=83  Identities=22%  Similarity=0.145  Sum_probs=66.5

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 020914           47 RAAAFLHLVKLNKALADAETTISLNPQWE---KGYFRKGCILEAMEQ-----------YDDALSAFQTALQYNPQSAEVS  112 (320)
Q Consensus        47 lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~  112 (320)
                      ++..++..|++-+|++..+..+...+++.   ..+...|.++..+..           .-.|+++|.++..+.|..+...
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46778899999999999999999988765   567778999877643           2358999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 020914          113 RKIKRVSQLAKDKKRAQ  129 (320)
Q Consensus       113 ~~l~~~~~~~~~~~~A~  129 (320)
                      +.+|.-......|+++.
T Consensus        82 ~~la~~l~s~~~Ykk~v   98 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAV   98 (111)
T ss_pred             HHHHHHhhhHHHHHHHH
Confidence            88887655555565553

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.78  E-value=0.013  Score=50.95  Aligned_cols=91  Identities=20%  Similarity=0.366  Sum_probs=75.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC--------CCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914           12 DKGNEFFKAGNYLKAAALYTQAIKQD--------PSN----------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ   73 (320)
Q Consensus        12 ~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   73 (320)
                      .-|...+++++|..|+.-|..||++-        |..          ..+-..+..||.++++.+-|+....+.|.++|.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            34566778888888888888887762        111          234567999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914           74 WEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (320)
Q Consensus        74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al  102 (320)
                      +..-+...|.|+..+.+|.+|...+--+.
T Consensus       261 ~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988776554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.77  E-value=0.16  Score=44.47  Aligned_cols=82  Identities=12%  Similarity=0.100  Sum_probs=69.3

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHH-HHhhCCCCHHH
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISL----NPQWEKGYFRKGCILEA---MEQYDDALSAFQT-ALQYNPQSAEV  111 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~  111 (320)
                      ++....++=.+|+...+|+.-+...+..-.+    -++.+..-+..|.++-+   .|+.++|+..+.. .....+.++++
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3577788888999999999999999887776    45677788899999999   9999999999999 44567788999


Q ss_pred             HHHHHHHHHH
Q 020914          112 SRKIKRVSQL  121 (320)
Q Consensus       112 ~~~l~~~~~~  121 (320)
                      +..+|.++..
T Consensus       220 ~gL~GRIyKD  229 (374)
T PF13281_consen  220 LGLLGRIYKD  229 (374)
T ss_pred             HHHHHHHHHH
Confidence            9999998854

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.75  E-value=0.044  Score=48.95  Aligned_cols=74  Identities=15%  Similarity=-0.002  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFRKGCILEAMEQYDDALSAFQTALQY-NPQSAEVSRK  114 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~  114 (320)
                      ..+...+|.|.+++|+.++|++.++..++.+|.  +..++.++-.++..+++|.++...+.+.=++ -|..+...+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT  335 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT  335 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence            344556777777777777777777777776664  4556777777777777777777666665333 2344443333

The molecular function of this protein is uncertain.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.069  Score=43.74  Aligned_cols=114  Identities=22%  Similarity=0.242  Sum_probs=98.5

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-HHH
Q 020914           18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD-DAL   95 (320)
Q Consensus        18 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~-~A~   95 (320)
                      ....+-..|+..-..+|.++|.+-.+|..+-.++..++ +..+-++.++..+.-+|++-+.|+.+-.+...+|++. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            34455678999999999999999999988888888776 5678889999999999999999999999999999998 889


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           96 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        96 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      +..+.++..+..+..+|...--+....+.++.-+.+
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y  169 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAY  169 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence            999999999999999998888887777777765443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.64  E-value=0.33  Score=42.71  Aligned_cols=98  Identities=13%  Similarity=0.060  Sum_probs=73.0

Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------------C------------CCC---HHHHHHHHHH
Q 020914           34 IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--------------N------------PQW---EKGYFRKGCI   84 (320)
Q Consensus        34 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------------~------------p~~---~~~~~~lg~~   84 (320)
                      +..+|.+.+++..++.++..+|+.+.|.+..++||-.              +            +.|   ..+.+.....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            4568999999999999999999999999999988642              1            112   2356777888


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCC-CHHH-HHHHHHHHHHHHHHHHHHHH
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQ-SAEV-SRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~-~~~~-~~~l~~~~~~~~~~~~A~~~  131 (320)
                      +.+.|-+.-|.+..+-.+.++|. |+-. ...+-......++++--+++
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~  161 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDF  161 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHH
Confidence            88999999999999999999999 6543 33333344445666655554

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.037  Score=46.12  Aligned_cols=60  Identities=10%  Similarity=0.044  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT  100 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  100 (320)
                      .+.-..-+.-....|++.+|...|..++...|++..+...++.||...|+.+.|...+..
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            455566677788899999999999999999999999999999999999999999877654

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=0.21  Score=44.57  Aligned_cols=194  Identities=13%  Similarity=0.106  Sum_probs=117.6

Q ss_pred             HcCCHHHHHHHHHHHHhcC------CCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCC-------C
Q 020914           19 KAGNYLKAAALYTQAIKQD------PSN--------PTLFSNRAAAFLHLVKLNKALADAETTISL---NPQ-------W   74 (320)
Q Consensus        19 ~~g~~~~A~~~~~~al~~~------p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~-------~   74 (320)
                      ..|-+++|.++-+++|..-      |-.        ...+-.+..|-.-.|++.+|++....+.+.   .|.       .
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            4566788888888887542      111        245667888999999999999988887765   444       3


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHhHHHHHHH
Q 020914           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ-SAE--VSRKIKRVSQLAKDKKRAQEVENIRSNV-DMVQHLDEFKSE  150 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~  150 (320)
                      +..++.+|.-....+.++.|...|..|++.-.. +..  +-.+++.+|...++.+.--+..+..... ............
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~  446 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEAS  446 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHH
Confidence            567888999999999999999999999987443 323  3455677777766554433332211111 011111112223


Q ss_pred             HhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC----------hhHHhhhcChhHHHHhhhhhhccccCc
Q 020914          151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD----------AKVYFLLDKEKTDTEKYAPIVNVDKAF  213 (320)
Q Consensus       151 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~----------~~~~~~lg~~~~A~~~~~~a~~~~~~~  213 (320)
                      +..-+|-.....+.+.++.....+.++.- ++..++          ..++..+|+..++.+...-++++.+..
T Consensus       447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi  518 (629)
T KOG2300|consen  447 ILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI  518 (629)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence            33333333333444444444433333222 111111          117888899999999998888876544

>KOG2449 consensus Methylmalonate semialdehyde dehydrogenase [Amino acid transport and metabolism; Carbohydrate transport and metabolism]

Probab=96.61  E-value=7e-05  Score=53.92  Aligned_cols=95  Identities=19%  Similarity=0.322  Sum_probs=83.4

Q ss_pred             HHHHhhHHHHHHHHHHhchh-CCCCCCChhHhhhcccccccccCcccchhhhccccccccccccccccccccccccCccc
Q 020914          222 CFQFLRQYADDSFSSAACLV-APKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEV  300 (320)
Q Consensus       222 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (320)
                      +...+..||...|-++-.+. .|+...+++++|-.-+.+++..+-.++.+...+.|.-...|+..+....+..+|.+++.
T Consensus        54 r~~yl~~ya~~~f~~~tiLsvtP~ms~ykeeI~gpVlv~l~~~tldd~I~Iin~nPygn~t~i~Tsn~atark~~~e~~a  133 (157)
T KOG2449|consen   54 RFIYLPGYAEGNFVGPTILSVTPNMSCYKEEIFGPVLVRLETETLDDAIFIINNNPYGNGTAIFTSNGATARKFCHEPDA  133 (157)
T ss_pred             ceEEeeccccCCcccceEEEecCCcceeHhhhhcceEEEEeecCCCceeEEEecCCCCceeEEEecCcHHhhhhhcCCCc
Confidence            34444556777777776665 78888999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhhchHHHhhh
Q 020914          301 LDISAHEVFPRLFKEK  316 (320)
Q Consensus       301 ~~~~~~~~~~~~~~~~  316 (320)
                      .++.++..+++.|+.+
T Consensus       134 ~qig~~~~ip~ilk~~  149 (157)
T KOG2449|consen  134 GQIGANVPIPVILKMF  149 (157)
T ss_pred             cceeccccccccccce
Confidence            9999999999999875

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.58  E-value=0.023  Score=51.58  Aligned_cols=106  Identities=13%  Similarity=0.191  Sum_probs=88.9

Q ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914           10 LKDKGNEFF-KAGNYLKAAALYTQAIKQDPSNP--TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (320)
Q Consensus        10 ~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   86 (320)
                      ++.++-.|. .+|+..+|..|+..++-..|...  .++..+|.++.+.|...+|--.+.-|+.-.|....-++-+|+++.
T Consensus       215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~a  294 (886)
T KOG4507|consen  215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYA  294 (886)
T ss_pred             HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHH
Confidence            344444444 57999999999999998877653  578899999999999999998888888888877777999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           87 AMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        87 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      .++.+.....+|..+.+..|.........
T Consensus       295 ml~~~N~S~~~ydha~k~~p~f~q~~~q~  323 (886)
T KOG4507|consen  295 MLGEYNHSVLCYDHALQARPGFEQAIKQR  323 (886)
T ss_pred             HHhhhhhhhhhhhhhhccCcchhHHHHHH
Confidence            99999999999999999999876654443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.57  E-value=0.34  Score=45.37  Aligned_cols=116  Identities=14%  Similarity=0.106  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHHHHH
Q 020914            8 MSLKDKGNEFFKAG-----NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLNPQWEKGYF   79 (320)
Q Consensus         8 ~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~   79 (320)
                      .+.+.+|.+|....     ++..|...|.++-+..  ++.+.+.+|.+|..-.   +...|..+|..|.+.  .+..+.+
T Consensus       289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~  364 (552)
T KOG1550|consen  289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIY  364 (552)
T ss_pred             ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHH
Confidence            35677889998853     7788999999998876  4788999999998776   578999999888654  5788999


Q ss_pred             HHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-HHHHHHH
Q 020914           80 RKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA-KDKKRAQ  129 (320)
Q Consensus        80 ~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~  129 (320)
                      .+|.||..    ..+...|..+|+++-+.+  ++.+...++.++... +.+..+.
T Consensus       365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~  417 (552)
T KOG1550|consen  365 RLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTAL  417 (552)
T ss_pred             HHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHH
Confidence            99999865    358899999999999988  555555666555433 4444443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.034  Score=50.92  Aligned_cols=97  Identities=16%  Similarity=0.197  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .+.+-+...++..+|..+++.|...+..-|.+      +....+++.||..+.+.+.|.+.++.|=+.+|.++-.-..+-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            35567788899999999999999999876654      577889999999999999999999999999999998888888


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhC
Q 020914           83 CILEAMEQYDDALSAFQTALQYN  105 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~  105 (320)
                      .+....+.-++|+.+..+.....
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhhh
Confidence            88889999999999988877653

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.50  E-value=0.0053  Score=48.98  Aligned_cols=60  Identities=22%  Similarity=0.224  Sum_probs=56.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q 020914           16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE   75 (320)
Q Consensus        16 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   75 (320)
                      .....++.+.|.+.|.+++++.|+....|+.+|....+.|+.+.|...|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            456789999999999999999999999999999999999999999999999999999764

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.50  E-value=0.21  Score=43.29  Aligned_cols=103  Identities=10%  Similarity=-0.024  Sum_probs=83.1

Q ss_pred             cchHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914            2 AAEAEEMSLKDKGNEFFKAGN------------YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS   69 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   69 (320)
                      .+|.+.++|..+....-..-.            .+.-+..|++||+.+|++..++..+=.+.....+.++..+-+++++.
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~   93 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF   93 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            468889999988876654432            46778899999999999999999998899999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhh
Q 020914           70 LNPQWEKGYFRKGCILEA---MEQYDDALSAFQTALQY  104 (320)
Q Consensus        70 l~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~  104 (320)
                      .+|++...|...-.....   .-.++.....|.++|..
T Consensus        94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            999999988765433322   23577888888888775

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.50  E-value=0.0084  Score=50.04  Aligned_cols=89  Identities=12%  Similarity=0.109  Sum_probs=76.8

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914           30 YTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR-KGCILEAMEQYDDALSAFQTALQYNPQS  108 (320)
Q Consensus        30 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~p~~  108 (320)
                      |.++-...|+++..|...+.--.+.|-|.+--..|.++++.+|.+++.|.. -+--++..++++.+...|.++|+.+|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            445555678899999999988888999999999999999999999999976 4455778899999999999999999999


Q ss_pred             HHHHHHHHHH
Q 020914          109 AEVSRKIKRV  118 (320)
Q Consensus       109 ~~~~~~l~~~  118 (320)
                      +..|...-++
T Consensus       176 p~iw~eyfr~  185 (435)
T COG5191         176 PRIWIEYFRM  185 (435)
T ss_pred             chHHHHHHHH
Confidence            9998776543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=0.4  Score=42.87  Aligned_cols=165  Identities=9%  Similarity=-0.057  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-C--HH
Q 020914           10 LKDKGNEFFKAGNYLKAAALYTQAIKQ---DPS-------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-W--EK   76 (320)
Q Consensus        10 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~--~~   76 (320)
                      +-.+..+-.-.|++.+|++....+.+.   .|.       .+..++.+|.-....|.++.|...|..|+++... +  ..
T Consensus       326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~  405 (629)
T KOG2300|consen  326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF  405 (629)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence            334556677889999999998888754   344       3577888999999999999999999999987543 3  34


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHH
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQS----------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE  146 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  146 (320)
                      +-.++|.+|.+.|+-+.-.+..+   .+.|.+          ..+++..|......+++.+|............+.++..
T Consensus       406 ~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~r  482 (629)
T KOG2300|consen  406 CNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNR  482 (629)
T ss_pred             HHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHH
Confidence            55678999999877655433333   345553          23455666666778888888766432222333344444


Q ss_pred             HHHHHhhhhcchhhhhhHHHHHHHHHHHHHH
Q 020914          147 FKSEMSEKYGAEECWKHVFSFVVETMETAVK  177 (320)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~  177 (320)
                      +..--...+|.+....|+..++.+...-+..
T Consensus       483 L~a~~LvLLs~v~lslgn~~es~nmvrpamq  513 (629)
T KOG2300|consen  483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQ  513 (629)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHhccchHHH
Confidence            4444444455555555555555544444443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.45  E-value=0.17  Score=37.04  Aligned_cols=76  Identities=12%  Similarity=0.133  Sum_probs=63.4

Q ss_pred             CHHHHHHHHHHHHHccC---HHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914           40 NPTLFSNRAAAFLHLVK---LNKALADAETTIS-LNPQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~-l~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  114 (320)
                      .....+++++++.+..+   .++.+..++..++ -.|+ .-+..|.++..+.++++|+.|+.+.+..|+..|++.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            45778899999988765   5688999999997 4554 45688889999999999999999999999999999988654


Q ss_pred             H
Q 020914          115 I  115 (320)
Q Consensus       115 l  115 (320)
                      -
T Consensus       111 k  111 (149)
T KOG3364|consen  111 K  111 (149)
T ss_pred             H
Confidence            3

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.03  Score=46.22  Aligned_cols=78  Identities=23%  Similarity=0.241  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  118 (320)
                      .....++=..+...++++.|..+.++.+.++|+++.-+.-+|.+|.++|.+.-|++.++..++..|+++.+-.....+
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            356667777888999999999999999999999999999999999999999999999999999999998876544443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.45  E-value=0.31  Score=38.20  Aligned_cols=56  Identities=16%  Similarity=0.106  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +-..++..+...|++++|+..++.++....+.   .-+-..|+.+....|++++|+...
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            45667888889999999999999888653332   345677888888899999987664

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.42  E-value=0.34  Score=44.40  Aligned_cols=125  Identities=11%  Similarity=0.008  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQWEKGYFRKGC   83 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~   83 (320)
                      .+-..|..-.......|+++...-.|++++.--....+.|...+.-....|+.+-|-..+..+.++. |+.+..+..-+.
T Consensus       295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~  374 (577)
T KOG1258|consen  295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR  374 (577)
T ss_pred             HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence            4455666666777789999999999999998777888999999999999999999999998888874 667788888888


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  129 (320)
                      .-...|++..|...+++...-.|+...+-.....+....|..+.+.
T Consensus       375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            8888999999999999999888998888777777777777777664

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.42  E-value=0.067  Score=40.60  Aligned_cols=87  Identities=15%  Similarity=0.061  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  120 (320)
                      ...+..+..+-...++.+.+...+.-.-.+.|+.+..-..-|.++...|++.+|+..|+....-.|..+.+...++.++.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            45677777888888999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 020914          121 LAKDKKR  127 (320)
Q Consensus       121 ~~~~~~~  127 (320)
                      ..++..-
T Consensus        90 ~~~D~~W   96 (160)
T PF09613_consen   90 ALGDPSW   96 (160)
T ss_pred             HcCChHH
Confidence            7776653

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=96.34  E-value=0.082  Score=52.48  Aligned_cols=129  Identities=16%  Similarity=0.143  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHH------HHHHH-HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAA------LYTQA-IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN------   71 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------   71 (320)
                      ..+......|......|.+.+|.+      .+... -.+.|..+..+..++..+..+|++++|+..-.++.-+.      
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            566778888888999999998888      44422 24578889999999999999999999999988876552      


Q ss_pred             --CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           72 --PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        72 --p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                        |+....+.+++...+..++...|...+.+++.+        .|.-.....+++.++...++++.|+...+
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le 1081 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLE 1081 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHH
Confidence              566788999999999999999999999999886        45555667888888888888888877643

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.32  E-value=0.038  Score=45.60  Aligned_cols=74  Identities=14%  Similarity=0.172  Sum_probs=66.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914           12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus        12 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      ++=..+...++++.|..+.++.+.++|.++.-+.-+|.+|.++|.+.-|++.++..+...|+.+.+-..++...
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            34456778899999999999999999999999999999999999999999999999999999988776665543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.25  E-value=0.012  Score=33.50  Aligned_cols=29  Identities=21%  Similarity=0.297  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           76 KGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      .++.++|.+|..+|++++|+..+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46777888888888888888888887775

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.16  Score=46.41  Aligned_cols=105  Identities=19%  Similarity=0.052  Sum_probs=82.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-HHhcCCCCHHHHHHH------HHHH
Q 020914           13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET-TISLNPQWEKGYFRK------GCIL   85 (320)
Q Consensus        13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~l~p~~~~~~~~l------g~~~   85 (320)
                      +...+...+....+.-....++..+|+++.++.++|.+....|..-.++..+.. +....|++......+      |...
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            455566677888888888889999999999999999988888877777666655 888888887665555      8888


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKR  117 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  117 (320)
                      ..+|+..++....++++.+.|.++.+...+..
T Consensus       153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~  184 (620)
T COG3914         153 KLLGRTAEAELALERAVDLLPKYPRVLGALMT  184 (620)
T ss_pred             HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence            88888899999999999999988665544433

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.15  E-value=0.11  Score=48.66  Aligned_cols=112  Identities=13%  Similarity=0.113  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKA-----GNYLKAAALYTQAIK-------QDPSNPTLFSNRAAAFLHLV-----KLNKALADAETT   67 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~-------~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~a   67 (320)
                      .++.+...+|.+++.-     .+.+.|+.+|+.+.+       ..  .+.+.+.+|.+|....     ++..|+..|.++
T Consensus       242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a  319 (552)
T KOG1550|consen  242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA  319 (552)
T ss_pred             cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence            4567788888888765     589999999999977       33  5678899999999854     678899999988


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914           68 ISLNPQWEKGYFRKGCILEAME---QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (320)
Q Consensus        68 l~l~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  122 (320)
                      -.+.  ++.+.+.+|.++..-.   ++..|.++|..|.+.  .+..+...++.++..-
T Consensus       320 A~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G  373 (552)
T KOG1550|consen  320 AELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG  373 (552)
T ss_pred             HhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence            7765  6778888999998755   578999999988774  6778888888887643

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.13  E-value=0.11  Score=38.07  Aligned_cols=78  Identities=12%  Similarity=0.135  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAG---NYLKAAALYTQAIK-QDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   80 (320)
                      +.+..++++.++....   +..+.+.+++..++ -.|.. -+..+.++..+.++++|++++.+.+..|+..|++.++.-.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3456788888887654   46789999999996 55543 4788999999999999999999999999999999988754


Q ss_pred             HHH
Q 020914           81 KGC   83 (320)
Q Consensus        81 lg~   83 (320)
                      .-.
T Consensus       111 k~~  113 (149)
T KOG3364|consen  111 KET  113 (149)
T ss_pred             HHH
Confidence            433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.11  E-value=0.014  Score=33.22  Aligned_cols=30  Identities=20%  Similarity=0.254  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISL   70 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (320)
                      +.++.++|.+|..+|++++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            356777888888888888888888887765

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.01  E-value=1.6  Score=42.22  Aligned_cols=123  Identities=14%  Similarity=-0.014  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS---------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---   74 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---   74 (320)
                      ++-....+.....+.++.+|..+..++-..-|.         .++.--..|.+....|+.++|++..+.++..-|.+   
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~  494 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR  494 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence            445566788888999999999999888754332         14566667888899999999999999999987764   


Q ss_pred             --HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----CHHHHH--HHHHHHHHHHHHHHHH
Q 020914           75 --EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ----SAEVSR--KIKRVSQLAKDKKRAQ  129 (320)
Q Consensus        75 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~--~l~~~~~~~~~~~~A~  129 (320)
                        ..++...|.+.+-.|++++|..+.+.+.++...    ...+|.  ..+.+....|+...+.
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~  557 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE  557 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence              457888999999999999999999998887332    333443  3356666777444443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.01  E-value=0.25  Score=42.06  Aligned_cols=94  Identities=19%  Similarity=0.145  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcc-------
Q 020914           22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQW-EKGYFRKGCILEAME-------   89 (320)
Q Consensus        22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~~~~~-------   89 (320)
                      +..+|+..|..+.+  ..++.+.+.+|..|..    ..+..+|...|++|....-.. ..+.+.+|.+|..-.       
T Consensus        92 ~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~  169 (292)
T COG0790          92 DKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY  169 (292)
T ss_pred             cHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence            34455555553322  2334555555555544    235555555555555443222 233444444444321       


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           90 QYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        90 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      +...|...|.++-...  ++.+...+|.++
T Consensus       170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y  197 (292)
T COG0790         170 DDKKALYLYRKAAELG--NPDAQLLLGRMY  197 (292)
T ss_pred             HHHhHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence            1224555555544443  444444455444

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.01  E-value=0.014  Score=32.61  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           76 KGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      ++|..+|.+-...++|++|++.|+++|++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46788899999999999999999998876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.86  E-value=0.16  Score=44.52  Aligned_cols=102  Identities=15%  Similarity=0.203  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-C-------------------------C------CHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--D-P-------------------------S------NPTLFSNRAAAF   51 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~-p-------------------------~------~~~~~~~lg~~~   51 (320)
                      .+...+..++.+...|+..+|+..++..+..  . +                         .      .+.++..+|.-.
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            4667788899999999999999999988871  1 1                         0      145677777777


Q ss_pred             HHc------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH-----------------HHHHHHHHHHHhhCCC
Q 020914           52 LHL------VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQY-----------------DDALSAFQTALQYNPQ  107 (320)
Q Consensus        52 ~~~------g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~-----------------~~A~~~~~~al~~~p~  107 (320)
                      ..+      +..++++..|.++++++|+...+|+.+|..+..+-+.                 ..|+..|-+++...+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            777      8889999999999999999999999999888654221                 3477888888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.75  E-value=0.096  Score=51.45  Aligned_cols=101  Identities=16%  Similarity=0.192  Sum_probs=81.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLV-------KLNKALADAETTISLNPQWEKGYFR   80 (320)
Q Consensus        11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~l~p~~~~~~~~   80 (320)
                      ....+.++....|++|+..|++.-.-.|..   -++.+..|.+....-       .+++|+..|++.. -.|.-|--|..
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  557 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG  557 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence            344567788889999999999999888875   477888888887652       3566776666543 25677888999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (320)
Q Consensus        81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  112 (320)
                      .|.+|.++|+|+|-+++|.-|++..|.++..-
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEIS  589 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence            99999999999999999999999999987653

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=95.62  E-value=0.17  Score=50.47  Aligned_cols=128  Identities=20%  Similarity=0.201  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-----   70 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----   70 (320)
                      |..+..+..++.++...|++++|+..-.++.-+        .|+....+.+++......++...|+..+.+++.+     
T Consensus       970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen  970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence            567788999999999999999999998888644        3556788999999999999999999999999876     


Q ss_pred             ---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           71 ---NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--------SAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        71 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                         .|.-.....+++.++..+++++.|+.+.+.|++.+..        ....+..++++....+.+..|...
T Consensus      1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred             CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence               3555667789999999999999999999999996432        245677777888788888777544

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=0.22  Score=43.48  Aligned_cols=99  Identities=12%  Similarity=0.088  Sum_probs=84.8

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----HHHHH
Q 020914           22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK--LNKALADAETTISLNPQWEKGYFRKGCILEAMEQ----YDDAL   95 (320)
Q Consensus        22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~----~~~A~   95 (320)
                      -.++-+.+...++..+|+.-.+|+.+..++.+.+.  +..-+..++++++.||.+-.+|..+-.+......    ..+-+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            46677888889999999999999999999998775  5888999999999999999998887766655443    46778


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914           96 SAFQTALQYNPQSAEVSRKIKRVSQ  120 (320)
Q Consensus        96 ~~~~~al~~~p~~~~~~~~l~~~~~  120 (320)
                      +...+++..++.+..+|.....+..
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHH
Confidence            8999999999999999998887765

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.47  E-value=0.36  Score=39.90  Aligned_cols=51  Identities=6%  Similarity=0.099  Sum_probs=42.4

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           19 KAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTIS   69 (320)
Q Consensus        19 ~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~   69 (320)
                      ...+.++|+..|++++++.|...    .++-.+-.+++++|+|++-+..|.+.|.
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            34578999999999999988763    5777888899999999998888887664

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.41  E-value=0.095  Score=36.25  Aligned_cols=56  Identities=16%  Similarity=0.211  Sum_probs=42.7

Q ss_pred             HHHccCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 020914           51 FLHLVKLNKALADAETTISLNPQ---------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNP  106 (320)
Q Consensus        51 ~~~~g~~~~A~~~~~~al~l~p~---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  106 (320)
                      ..+.|+|.+|++.+.+.+.....         ...+..++|.++...|++++|+..++.++++..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            34677888887777776655321         245678899999999999999999999998744

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.38  E-value=0.068  Score=45.17  Aligned_cols=62  Identities=13%  Similarity=0.070  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914           60 ALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (320)
Q Consensus        60 A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  121 (320)
                      |..+|.+|+.+.|++...|+++|.++...|+.-+|+-+|-+++......+.+..++..+...
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            56777888888888888888888888878888888888888877655567777777766655

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=95.32  E-value=0.6  Score=44.07  Aligned_cols=60  Identities=28%  Similarity=0.287  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHH------HHhc----CCCC-HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAET------TISL----NPQW-EKGYFRKGCILEAMEQYDDALSAFQTA  101 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~------al~l----~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~a  101 (320)
                      +.|-.-|.+|.+..++++|+++|++      ++++    .|.. ...--..|.-+...|+++.|+.+|-.+
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea  732 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA  732 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence            5566677888888888888888764      4444    3432 333445678888889999888887654

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.29  E-value=0.068  Score=29.47  Aligned_cols=20  Identities=20%  Similarity=0.127  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHccCHHHHHHH
Q 020914           44 FSNRAAAFLHLVKLNKALAD   63 (320)
Q Consensus        44 ~~~lg~~~~~~g~~~~A~~~   63 (320)
                      ++.+|..+...|++++|+..
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            33344444444444444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=95.25  E-value=0.88  Score=41.39  Aligned_cols=73  Identities=12%  Similarity=0.104  Sum_probs=54.5

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           31 TQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        31 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      ++-|+.+|.+..+|+.+-.-+..+ .+++....|++.+.-.|..+.+|......-...++|+.-...|.+||..
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            455677787777777776655544 7778888888888888888877777777777777777777777777764

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.10  E-value=0.33  Score=31.95  Aligned_cols=34  Identities=12%  Similarity=0.217  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN   40 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~   40 (320)
                      +......|.-++.+.+.++|+..+.++++..++.
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~   39 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDR   39 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh
Confidence            3444455555555555555555555555544443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.09  E-value=0.15  Score=48.03  Aligned_cols=115  Identities=25%  Similarity=0.413  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLFSNRAAAFLHL--VKLNKALADAETTISLNPQWEKGYF   79 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~   79 (320)
                      .+......|+.+++.+++.+|.--|..++.+-|.    .+....+.+.|+..+  |+|.+++...+-++...|....++.
T Consensus        52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll  131 (748)
T KOG4151|consen   52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL  131 (748)
T ss_pred             HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence            3456778899999999999999889999988774    356677888888766  6899999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (320)
Q Consensus        80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  120 (320)
                      .++.+|..+++++-|++...-.....|.+..+-....++..
T Consensus       132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~  172 (748)
T KOG4151|consen  132 KRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG  172 (748)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence            99999999999999999988888899999766554444433

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.08  E-value=0.039  Score=30.84  Aligned_cols=28  Identities=18%  Similarity=0.197  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQ   36 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~   36 (320)
                      .+..+|.+-+..++|++|+..|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4455555555555666666555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.04  E-value=1.5  Score=40.30  Aligned_cols=104  Identities=20%  Similarity=0.121  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-H
Q 020914           25 KAAALYTQAIKQDPSNPTLFSN--RAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT-A  101 (320)
Q Consensus        25 ~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~-a  101 (320)
                      -++..+...+.++|.++..+..  +...+..++....++-.+..++..+|++..++.++|.+....|....++..+.. +
T Consensus        49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a  128 (620)
T COG3914          49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA  128 (620)
T ss_pred             HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3677777777888888877444  588888899999999999999999999999999999999888887777766655 9


Q ss_pred             HhhCCCCHHHHHHH------HHHHHHHHHHHHH
Q 020914          102 LQYNPQSAEVSRKI------KRVSQLAKDKKRA  128 (320)
Q Consensus       102 l~~~p~~~~~~~~l------~~~~~~~~~~~~A  128 (320)
                      +...|.+......+      +.....+++..++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (620)
T COG3914         129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEA  161 (620)
T ss_pred             HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHH
Confidence            99999998877666      4444444444444

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.03  E-value=2.1  Score=37.75  Aligned_cols=101  Identities=15%  Similarity=0.061  Sum_probs=78.6

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------CCC------------C---HHHHHHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------------DPS------------N---PTLFSNRAAAFLH   53 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------~p~------------~---~~~~~~lg~~~~~   53 (320)
                      .|-+++++.+++.++..+|++..|.+..++||=.              ++.            |   -.+.+.....+.+
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~  115 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR  115 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence            5778999999999999999999999999999622              111            1   2567777888999


Q ss_pred             ccCHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           54 LVKLNKALADAETTISLNPQ-WEKG-YFRKGCILEAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        54 ~g~~~~A~~~~~~al~l~p~-~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~  103 (320)
                      .|.+..|++.++-.+.+||. ++-+ .+.+-....+.++|+-=++.++....
T Consensus       116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            99999999999999999998 6654 34444444567788777777765544

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.02  E-value=0.36  Score=39.10  Aligned_cols=79  Identities=14%  Similarity=0.012  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 020914            5 AEEMSLKDKGNEFFKAGNY-------LKAAALYTQAIKQD--PS----NPTLFSNRAAAFLHLVKLNKALADAETTISLN   71 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~-------~~A~~~~~~al~~~--p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (320)
                      ..+..+..+|.+|-..|+-       ..|+..|.++++..  |.    ...+.+.+|...+++|++++|+..|.+++...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            4467888999999999984       45666666666443  22    25789999999999999999999999999864


Q ss_pred             CCCH-HHHHHHHH
Q 020914           72 PQWE-KGYFRKGC   83 (320)
Q Consensus        72 p~~~-~~~~~lg~   83 (320)
                      .... ..+..+|.
T Consensus       196 ~~s~~~~l~~~AR  208 (214)
T PF09986_consen  196 KASKEPKLKDMAR  208 (214)
T ss_pred             CCCCcHHHHHHHH
Confidence            3332 34544443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.97  E-value=0.34  Score=31.87  Aligned_cols=63  Identities=13%  Similarity=0.097  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH---HHHHHccCHHHHHHHHHHHHhh
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG---CILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg---~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      .-....|.-++..++.++|+..++++++..++.+..+..+|   .+|...|+|.++++.--+-+.+
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677788899999999999999999888777665555   6788999999998877666554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.96  E-value=0.28  Score=45.27  Aligned_cols=90  Identities=17%  Similarity=0.055  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      .++.+-|.-.++..+|..+++.|...+..-|.+      .+....++.||..+.+.+.|.++++.|-+.+|.++-....+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            445667777889999999999999999876643      56788899999999999999999999999999998887777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 020914          116 KRVSQLAKDKKRAQEV  131 (320)
Q Consensus       116 ~~~~~~~~~~~~A~~~  131 (320)
                      ..+....+.-++|+..
T Consensus       435 ~~~~~~E~~Se~AL~~  450 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTC  450 (872)
T ss_pred             HHHHHHhcchHHHHHH
Confidence            7776667777777644

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.96  E-value=0.75  Score=40.91  Aligned_cols=122  Identities=15%  Similarity=0.021  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHhc---------CC---C
Q 020914            9 SLKDKGNEFFKAGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA--DAETTISL---------NP---Q   73 (320)
Q Consensus         9 ~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~l---------~p---~   73 (320)
                      -+..-+.-+...|. -+.|++.++.+++..|.+...-...  ...-...|.+|+.  .+.+.+.+         .|   .
T Consensus       381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~  458 (549)
T PF07079_consen  381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS  458 (549)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence            45566777888887 7889999999999988875332221  1122223444432  22233322         23   2


Q ss_pred             CHHHHHHHH--HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           74 WEKGYFRKG--CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        74 ~~~~~~~lg--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                      +.+.-..++  .-++..|+|.++.-+-.-..++.| ++.++..+|-+....+++++|.+...
T Consensus       459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~  519 (549)
T PF07079_consen  459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ  519 (549)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            344444444  456789999999999999999999 99999999999999999999987743

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.95  E-value=0.11  Score=36.02  Aligned_cols=57  Identities=18%  Similarity=0.177  Sum_probs=46.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 020914           16 EFFKAGNYLKAAALYTQAIKQDPS---------NPTLFSNRAAAFLHLVKLNKALADAETTISLNP   72 (320)
Q Consensus        16 ~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   72 (320)
                      .....|+|.+|++.+.+.+.....         ...+..++|.+....|++++|+..+++++++-.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            456789999998888888755221         246788899999999999999999999998854

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.88  E-value=0.46  Score=35.58  Aligned_cols=86  Identities=15%  Similarity=0.045  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  121 (320)
                      ..+.....+-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..|+....-.+..+.+...++.++..
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            44555555556689999999999888889999999999999999999999999999999999888888888888888887


Q ss_pred             HHHHHH
Q 020914          122 AKDKKR  127 (320)
Q Consensus       122 ~~~~~~  127 (320)
                      .|+..-
T Consensus        91 l~Dp~W   96 (153)
T TIGR02561        91 KGDAEW   96 (153)
T ss_pred             cCChHH
Confidence            776653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.73  E-value=0.22  Score=44.63  Aligned_cols=75  Identities=16%  Similarity=0.119  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLNPQWEKGYFR   80 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~   80 (320)
                      +...|..-....-+.+.+.+--..|.+++..+|+++.+|..-|.=.+..+. .+.|.+.+.++|+.+|+++..|..
T Consensus       104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence            444555554444455668899999999999999999999999888777776 889999999999999999987643

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.68  E-value=0.6  Score=38.47  Aligned_cols=112  Identities=12%  Similarity=0.121  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHhcCCCCHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAG-NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLN-KALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      |.+--.|.-+-.++-..+ +..+-++++...++-+|.+-.+|..+-.+...+|++. .-+++.+.++..+.++-.+|-.+
T Consensus        74 pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshR  153 (318)
T KOG0530|consen   74 PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHR  153 (318)
T ss_pred             cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHH
Confidence            444445555555555443 5677888899999999999999999999999999888 88899999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      -.+....+.++.-+.+....|+.+-.+-.+|...
T Consensus       154 qW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~R  187 (318)
T KOG0530|consen  154 QWVLRFFKDYEDELAYADELLEEDIRNNSAWNQR  187 (318)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhhhccchhhee
Confidence            9999999999999999999998887777777653

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=94.68  E-value=2  Score=39.59  Aligned_cols=192  Identities=9%  Similarity=0.010  Sum_probs=125.7

Q ss_pred             HHHcCCHHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914           17 FFKAGNYLKAAALYTQAIKQ-----DPS---NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (320)
Q Consensus        17 ~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   88 (320)
                      +.......+.+..++..+.-     .|-   .-..|......-...|+++...-.|++++--.....+.|...+.-....
T Consensus       265 ~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~  344 (577)
T KOG1258|consen  265 YQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESS  344 (577)
T ss_pred             HHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHc
Confidence            33444556666677766642     232   3467888888888999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHhHHHHHHHHhhhhcchhhhhhHHH
Q 020914           89 EQYDDALSAFQTALQY-NPQSAEVSRKIKRVSQLAKDKKRAQEVENIR-SNVDMVQHLDEFKSEMSEKYGAEECWKHVFS  166 (320)
Q Consensus        89 ~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (320)
                      |+..-|-..+.++.++ .|+.+.++..-+.+....|++..|..+++.. +..............+....|+......   
T Consensus       345 ~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~---  421 (577)
T KOG1258|consen  345 GDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY---  421 (577)
T ss_pred             CchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH---
Confidence            9999999999998887 5667778888888888899999998775311 1111111111122223333333322211   


Q ss_pred             HHHHHHHHHHHhHhhccccChh--------HHhhhcChhHHHHhhhhhhccccCc
Q 020914          167 FVVETMETAVKSWHETSKVDAK--------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (320)
Q Consensus       167 ~a~~~~~~a~~~~~~~~~~~~~--------~~~~lg~~~~A~~~~~~a~~~~~~~  213 (320)
                        ...+-..+........+.+.        .+...++.+.|...+..++++.|..
T Consensus       422 --~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~  474 (577)
T KOG1258|consen  422 --KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC  474 (577)
T ss_pred             --HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence              11111112112222222222        5566688889999999999988875

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.65  E-value=0.14  Score=46.23  Aligned_cols=89  Identities=16%  Similarity=0.067  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914           44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM---EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (320)
Q Consensus        44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  120 (320)
                      +..-|.=-+..+....|+..|.++++.-|+....+.+++.++++.   |+--.|+.....|++++|....+|+.|+.++.
T Consensus       377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~  456 (758)
T KOG1310|consen  377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN  456 (758)
T ss_pred             HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence            333333334455678999999999999999999999999999885   56677889999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020914          121 LAKDKKRAQEVE  132 (320)
Q Consensus       121 ~~~~~~~A~~~~  132 (320)
                      .++++.+|++..
T Consensus       457 el~r~~eal~~~  468 (758)
T KOG1310|consen  457 ELTRYLEALSCH  468 (758)
T ss_pred             HHhhHHHhhhhH
Confidence            999999998663

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.62  E-value=0.15  Score=28.08  Aligned_cols=33  Identities=15%  Similarity=0.185  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHH--HHHhhCCCC
Q 020914           76 KGYFRKGCILEAMEQYDDALSAFQ--TALQYNPQS  108 (320)
Q Consensus        76 ~~~~~lg~~~~~~~~~~~A~~~~~--~al~~~p~~  108 (320)
                      +.++.+|-.+...|++++|+..|+  -+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            568889999999999999999944  777777754

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.59  E-value=0.57  Score=33.58  Aligned_cols=65  Identities=14%  Similarity=0.133  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIK-------QDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISL   70 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-------~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (320)
                      ++.++-.++..+...|+|++++..-.++|.       ++.+.    ..+.+++|.++..+|+.++|+..|+.+-++
T Consensus        54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            355677788889999999999998888884       34443    356778999999999999999999998664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.51  E-value=3.1  Score=36.54  Aligned_cols=98  Identities=16%  Similarity=0.049  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      .+-.....+..-.-.|+++.|.+-|+..+. +|+. .--+..+-.--..+|..+.|+.+-+++-..-|.-+.++...-..
T Consensus       119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~  197 (531)
T COG3898         119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA  197 (531)
T ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence            344556667778889999999999998775 4432 11233333334578999999999999999999999998888788


Q ss_pred             HHHccCHHHHHHHHHHHHhh
Q 020914           85 LEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~  104 (320)
                      ....|+++.|++..+.....
T Consensus       198 r~~~gdWd~AlkLvd~~~~~  217 (531)
T COG3898         198 RCAAGDWDGALKLVDAQRAA  217 (531)
T ss_pred             HHhcCChHHHHHHHHHHHHH
Confidence            88999999999998876654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.31  E-value=0.067  Score=27.01  Aligned_cols=22  Identities=18%  Similarity=0.043  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHH
Q 020914           77 GYFRKGCILEAMEQYDDALSAF   98 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~   98 (320)
                      +.+.+|.++..+|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3444455555555555554443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.31  E-value=3.3  Score=40.92  Aligned_cols=58  Identities=17%  Similarity=0.171  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  103 (320)
                      +.+|..+|.+..+.|...+|++.|-+|     +++..|...-++-.+.|.|++=+.++..|-+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            445555555555555555555555333     4444444444555555555555555544443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.26  E-value=0.33  Score=40.74  Aligned_cols=63  Identities=17%  Similarity=0.193  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  103 (320)
                      ..++..++..+...|+++.++..+++.+.++|-+..+|..+-..|...|+...|+..|++.-+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            456777777777777777787888877888887777777777777777877777777776555

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.25  E-value=0.082  Score=26.67  Aligned_cols=24  Identities=17%  Similarity=-0.121  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAE   65 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~   65 (320)
                      .+.+.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345556666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.24  E-value=1.8  Score=36.67  Aligned_cols=112  Identities=15%  Similarity=0.069  Sum_probs=79.6

Q ss_pred             HHHcCCHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHhc----CC---CC------
Q 020914           17 FFKAGNYLKAAALYTQAIKQD----PSN----PTLFSNRAAAFLHLV-KLNKALADAETTISL----NP---QW------   74 (320)
Q Consensus        17 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l----~p---~~------   74 (320)
                      ...+|+++.|..++.|+-...    |+.    +..+++.|......+ +++.|+..++++.++    .+   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            357899999999999986543    433    578999999999999 999999999999887    21   11      


Q ss_pred             -HHHHHHHHHHHHHccCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           75 -EKGYFRKGCILEAMEQYD---DALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        75 -~~~~~~lg~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                       ..++..++.+|...+.++   +|....+.+-.-.|+.+..+..--.+....++.+.+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~  140 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEY  140 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHH
Confidence             346778899998887765   455555555556787777764444444333334443

It is also involved in sporulation [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.22  E-value=0.88  Score=35.63  Aligned_cols=62  Identities=8%  Similarity=-0.007  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGYFRKGCILEAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  103 (320)
                      .++..+|..|.+.|+.++|++.|.++......   ..+.++.+-.+....+++.....+..++-.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            44555555555555555555555554443322   123444444444555555555555444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.03  E-value=0.47  Score=39.85  Aligned_cols=65  Identities=12%  Similarity=0.083  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL   70 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (320)
                      ...++..++..+...|+++.+++.+++.+..+|.+..+|..+=..|...|+...|+..|++.-+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            45678888999999999999999999999999999999999999999999999999999887664

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.00  E-value=0.097  Score=43.96  Aligned_cols=77  Identities=10%  Similarity=0.152  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSN-RAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   80 (320)
                      |.++..|..-+......|-|.+--..|.+++..+|.+++.|.. -+.-+...++.+.+...|.++|.++|+++..|+.
T Consensus       104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            3455666666666667788888999999999999999999987 5666778899999999999999999999988764

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.90  E-value=7.5  Score=38.64  Aligned_cols=113  Identities=12%  Similarity=0.047  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCC-HH------
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN--PQW-EK------   76 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~-~~------   76 (320)
                      .+..|-.+|...++.|...+|++.|-+|     +++..|...-.+-.+.|+|++-+.++.-|-+.-  |.- ..      
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence            4568999999999999999999999765     567888888888899999999999887765532  211 11      


Q ss_pred             ------------------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           77 ------------------GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        77 ------------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                                        -.-..|+-++..|.|+.|.-.|.        +..-|..++..+..+|+++.|.+.
T Consensus      1178 kt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred             HhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHH
Confidence                              12233444555566666655553        344566777777777777777654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.49  E-value=0.39  Score=40.12  Aligned_cols=56  Identities=20%  Similarity=0.210  Sum_probs=33.6

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914           45 SNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT  100 (320)
Q Consensus        45 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  100 (320)
                      ...+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+--.|++.|++
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            33455555566666666666666666666666666666666666666666555554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.39  E-value=0.49  Score=37.47  Aligned_cols=71  Identities=13%  Similarity=0.128  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHHHHHH
Q 020914           56 KLNKALADAETTISLNP--QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ----SAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        56 ~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      .-++|..-|-++=. .|  +.+...+.+|..|. ..+.++|+..+.++|++.+.    ++++...|+.++...++++.|
T Consensus       121 ~d~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  121 GDQEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CcHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            33566655543322 22  45667777776665 56777777777777777543    367777777777777777766

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.36  E-value=0.4  Score=40.41  Aligned_cols=62  Identities=16%  Similarity=0.067  Sum_probs=53.0

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914           26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus        26 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      |+.+|.+|+.+.|.+...|+.+|.+....|+.=.|+=+|-+++-...-.+.+.-++..++..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999997655568888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.35  E-value=1.1  Score=40.04  Aligned_cols=52  Identities=17%  Similarity=0.170  Sum_probs=36.3

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914           48 AAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT  100 (320)
Q Consensus        48 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  100 (320)
                      |..++..|+|.++..+..-..++.| .+.++..+|.|++...+|++|..++..
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            3445566777777777777777777 777777777777777777777776654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.29  E-value=0.5  Score=41.55  Aligned_cols=86  Identities=15%  Similarity=-0.007  Sum_probs=69.8

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCC--------C-----C-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 020914           45 SNRAAAFLHLVKLNKALADAETTISLNP--------Q-----W-----EKGYFRKGCILEAMEQYDDALSAFQTALQYNP  106 (320)
Q Consensus        45 ~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~-----~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  106 (320)
                      ..=|..++++++|..|..-|..+|++..        .     +     ..+--.+..||..+++.+-|+..-.+.+-++|
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP  259 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP  259 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence            3346667788888888888888888732        1     1     12345688999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH
Q 020914          107 QSAEVSRKIKRVSQLAKDKKRAQE  130 (320)
Q Consensus       107 ~~~~~~~~l~~~~~~~~~~~~A~~  130 (320)
                      .+..-+...+.+...+.+|.+|-.
T Consensus       260 ~~frnHLrqAavfR~LeRy~eAar  283 (569)
T PF15015_consen  260 SYFRNHLRQAAVFRRLERYSEAAR  283 (569)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988843

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.04  E-value=0.93  Score=40.67  Aligned_cols=113  Identities=16%  Similarity=0.184  Sum_probs=78.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 020914           16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL   95 (320)
Q Consensus        16 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~   95 (320)
                      .....|+.-.|-.-...++.-.|.+|......+.++..+|.|+.|...+.-+=..-..-..+...+-...+.+|++++|.
T Consensus       298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence            44567888888888888999999999999999999999999999988886655444444445555556667788888887


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           96 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        96 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      ..-.-.|.-.-+++++....+.....+|-++++
T Consensus       378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~  410 (831)
T PRK15180        378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKS  410 (831)
T ss_pred             HHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence            777777665555555433333333334444444

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.97  E-value=1.2  Score=39.04  Aligned_cols=114  Identities=14%  Similarity=0.099  Sum_probs=92.3

Q ss_pred             cchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----HHHHHHHHHHHHhcCCCCH
Q 020914            2 AAEAEEMSLKDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----LNKALADAETTISLNPQWE   75 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----~~~A~~~~~~al~l~p~~~   75 (320)
                      .+|+.--+|+.+..++.+.+  ++..=+...+++++.+|.+..+|..+=.+......    ..+-+++.+++|.-++.|.
T Consensus       104 ~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNY  183 (421)
T KOG0529|consen  104 VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNY  183 (421)
T ss_pred             hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhh
Confidence            36888899999999999876  47889999999999999998888777666555443    5677899999999999999


Q ss_pred             HHHHHHHHHHHH------ccC------HHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           76 KGYFRKGCILEA------MEQ------YDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        76 ~~~~~lg~~~~~------~~~------~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      .+|+.+..++..      .|.      ...-++.-..|+-.+|++..+|+..
T Consensus       184 saWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~  235 (421)
T KOG0529|consen  184 SAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH  235 (421)
T ss_pred             hHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence            999999988873      231      2345677777888899999998764

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=92.97  E-value=0.35  Score=25.34  Aligned_cols=30  Identities=23%  Similarity=0.276  Sum_probs=21.0

Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914           89 EQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (320)
Q Consensus        89 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  118 (320)
                      |+.+.|...|++++...|.++..|......
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            456677777777777777777777665543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.91  E-value=9.8  Score=37.07  Aligned_cols=197  Identities=13%  Similarity=0.046  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----C--H
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----W--E   75 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~--~   75 (320)
                      +...-..|.+....|+++.|++..+.+++.-|.+     ..++...|.+..-.|++++|.....++.++...    .  .
T Consensus       458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~  537 (894)
T COG2909         458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLAL  537 (894)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            3455567889999999999999999999887765     577899999999999999999999999887432    2  3


Q ss_pred             HHHHHHHHHHHHccC--HHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHH--HH
Q 020914           76 KGYFRKGCILEAMEQ--YDDALSAFQTALQ----YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD--EF  147 (320)
Q Consensus        76 ~~~~~lg~~~~~~~~--~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~  147 (320)
                      .+....+.++...|+  +.+....|...-.    ..|-+.......+.++...-+.+.+..-  .+..+.......  +.
T Consensus       538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~e--ar~~~~~~~~~~~~~~  615 (894)
T COG2909         538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAE--ARLGIEVGSVYTPQPL  615 (894)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHH--hhhcchhhhhcccchh
Confidence            455667888899993  3333333333222    2343333333333333222223333221  122222211110  00


Q ss_pred             -HHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-----------HHhhhcChhHHHHhhhhh
Q 020914          148 -KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAPI  206 (320)
Q Consensus       148 -~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----------~~~~lg~~~~A~~~~~~a  206 (320)
                       .-.....+.......|+.+.+....++......... .++.           .+...|+...+.....+.
T Consensus       616 ~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         616 LSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence             111112445555566666666666665554444332 1111           455667777777666553

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=92.57  E-value=9.8  Score=36.19  Aligned_cols=27  Identities=15%  Similarity=0.180  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETT   67 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~a   67 (320)
                      ..++.++|..+..+..|++|.++|.+.
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            466777777777777777777777654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=92.21  E-value=0.64  Score=38.91  Aligned_cols=59  Identities=20%  Similarity=0.156  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT   67 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   67 (320)
                      .+...+..+...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.|+..|++.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            34556778889999999999999999999999999999999999999988888888764

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.11  E-value=6.5  Score=33.10  Aligned_cols=170  Identities=12%  Similarity=0.102  Sum_probs=102.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHccCHH----------HHHHH---------
Q 020914           11 KDKGNEFFKAGNYLKAAALYTQAIKQDP--------SNPTLFSNRAAAFLHLVKLN----------KALAD---------   63 (320)
Q Consensus        11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~----------~A~~~---------   63 (320)
                      ..+++-....+++++|+..|.+.+...-        ....+...++..|...|++.          ++...         
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            6778888999999999999999986621        12467888999999999874          22222         


Q ss_pred             HHHHHhcCCCCHH---------------------------HHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHH
Q 020914           64 AETTISLNPQWEK---------------------------GYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAE  110 (320)
Q Consensus        64 ~~~al~l~p~~~~---------------------------~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~  110 (320)
                      .+..++..|..++                           .-..+..++++.|+|.+|+......+.-      .|.-..
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            2333444443211                           1233556677888888888766655532      233344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-hHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHh
Q 020914          111 VSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQ-HLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWH  180 (320)
Q Consensus       111 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~  180 (320)
                      ++..=+.++...++..++............+. -......++....|...+...++.-|-.+|=+|.+-|.
T Consensus       167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft  237 (421)
T COG5159         167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT  237 (421)
T ss_pred             hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence            55555566666666665544332222111111 11223444555556667766677777777777776664

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.96  E-value=12  Score=35.78  Aligned_cols=83  Identities=18%  Similarity=0.101  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHh-cCCC---CHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCC--CCH----HHHHHHHHHHHHccCHH
Q 020914           24 LKAAALYTQAIK-QDPS---NPTLFSNRAAAFL-HLVKLNKALADAETTISLNP--QWE----KGYFRKGCILEAMEQYD   92 (320)
Q Consensus        24 ~~A~~~~~~al~-~~p~---~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p--~~~----~~~~~lg~~~~~~~~~~   92 (320)
                      ..|+.|++-+++ ..+.   .+.++..+|.++. ...+.+.|..++++++.+..  +..    .+.+.++.++.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            456777776663 2211   2466777777777 67788888888888877653  332    23455677777777666


Q ss_pred             HHHHHHHHHHhhCCC
Q 020914           93 DALSAFQTALQYNPQ  107 (320)
Q Consensus        93 ~A~~~~~~al~~~p~  107 (320)
                       |....+++++...+
T Consensus       118 -a~~~l~~~I~~~~~  131 (608)
T PF10345_consen  118 -ALKNLDKAIEDSET  131 (608)
T ss_pred             -HHHHHHHHHHHHhc
Confidence             88888887776544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.86  E-value=1.3  Score=29.04  Aligned_cols=30  Identities=23%  Similarity=0.131  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIK   35 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~   35 (320)
                      .+..+..++..+-..|++++|+.+|+++++
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe   34 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIE   34 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            455666667777777777777777665543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=91.78  E-value=0.78  Score=34.32  Aligned_cols=54  Identities=19%  Similarity=0.075  Sum_probs=37.5

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD   93 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~   93 (320)
                      ........+......|+++-|....+.++..+|++..+...++.++..+|.-.+
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            356666777777778888888888888888888888888888888877765543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.74  E-value=11  Score=35.95  Aligned_cols=109  Identities=16%  Similarity=0.001  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---
Q 020914            4 EAEEMSLKDKGNEFF-KAGNYLKAAALYTQAIKQDPS--N----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---   73 (320)
Q Consensus         4 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---   73 (320)
                      -.++...+.+|.+++ ...++++|..++++++.+...  .    ..+-+.++.++.+.+... |+..++++|+...+   
T Consensus        56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~  134 (608)
T PF10345_consen   56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH  134 (608)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence            367888999999999 678999999999999877643  2    244566789998888877 99999999987544   


Q ss_pred             C-HHHHHHH--HHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHH
Q 020914           74 W-EKGYFRK--GCILEAMEQYDDALSAFQTALQYN--PQSAEVSR  113 (320)
Q Consensus        74 ~-~~~~~~l--g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~  113 (320)
                      . +...+.+  ...+...+++..|++.++......  +.++.+..
T Consensus       135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v  179 (608)
T PF10345_consen  135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV  179 (608)
T ss_pred             hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence            2 2222222  333333489999999999999876  46655433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.48  E-value=0.47  Score=42.04  Aligned_cols=61  Identities=23%  Similarity=0.272  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           43 LFSNRAAAFLHLVKLNKALADAETTISLN---------PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        43 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~---------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      +...+..++..+|+|..|++.++.. .++         +-+...+|..|-+|+.+++|.+|++.|...|-.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778888999999999987543 222         234567899999999999999999999988753

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.37  E-value=1  Score=35.74  Aligned_cols=71  Identities=14%  Similarity=0.091  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHHHHH
Q 020914           23 YLKAAALYTQAIKQDP--SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----WEKGYFRKGCILEAMEQYDDAL   95 (320)
Q Consensus        23 ~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~lg~~~~~~~~~~~A~   95 (320)
                      -++|...|-++= -.|  +++++.+.+|..|. ..+.++|+..+.++|++.+.    +++.+..++.++..+|+++.|-
T Consensus       122 d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  122 DQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             cHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            367887776543 333  46899999998776 67889999999999998653    5899999999999999999984

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=91.12  E-value=3.9  Score=43.91  Aligned_cols=114  Identities=17%  Similarity=0.140  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC---------
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQ---------   73 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~---------   73 (320)
                      ..-++.|.+.|.+....|+++.|-...-+|.+..  -+.++..+|...+..|+-..|+..+++.+.++ |+         
T Consensus      1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred             chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence            4567899999999999999999999999998877  47999999999999999999999999999663 33         


Q ss_pred             -C------HHHHHHHHHHHHHccCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           74 -W------EKGYFRKGCILEAMEQYD--DALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        74 -~------~~~~~~lg~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                       .      ..+.+..+.-....++++  +-++.|+.+.++.|.....++.+|..+
T Consensus      1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence             1      123444444455566643  456899999999998877777777443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=90.75  E-value=0.74  Score=23.97  Aligned_cols=27  Identities=22%  Similarity=0.394  Sum_probs=14.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914           22 NYLKAAALYTQAIKQDPSNPTLFSNRA   48 (320)
Q Consensus        22 ~~~~A~~~~~~al~~~p~~~~~~~~lg   48 (320)
                      +++.|...|++++...|.++.+|...+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            445555555555555555555555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=90.61  E-value=0.84  Score=40.93  Aligned_cols=106  Identities=17%  Similarity=0.191  Sum_probs=83.3

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|..+.-....+.+....|.|+.|...+.-+-..-.....+..-+-.....+|++++|...-.-.+.-.-++++....-+
T Consensus       319 ~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa  398 (831)
T PRK15180        319 QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAA  398 (831)
T ss_pred             CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeec
Confidence            34555566677889999999999999887665554444566666667788999999999998888877767777776666


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQS  108 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~  108 (320)
                      ..-..+|-+++|....++.+.++|..
T Consensus       399 ~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        399 GSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             ccHHHHhHHHHHHHHHHHHhccCChh
Confidence            66778889999999999999998864

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=90.55  E-value=9.8  Score=32.27  Aligned_cols=106  Identities=13%  Similarity=0.058  Sum_probs=81.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 020914           13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV----KLNKALADAETTISLNPQWEKGYFRKGCILEA-   87 (320)
Q Consensus        13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-   87 (320)
                      .+......+++..|...+.++-...  ++.+...+|.+|..-.    +..+|+..|+  ......++.+.+.+|.+|.. 
T Consensus        47 ~~~~~~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G  122 (292)
T COG0790          47 NGAGSAYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANG  122 (292)
T ss_pred             ccccccccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcC
Confidence            3444557789999999999887633  3478888888887653    6789999999  44556788899999999987 


Q ss_pred             ---ccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHH
Q 020914           88 ---MEQYDDALSAFQTALQYNPQS-AEVSRKIKRVSQLA  122 (320)
Q Consensus        88 ---~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~  122 (320)
                         ..++.+|...|+++.+..-.. ..+...++.++..-
T Consensus       123 ~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g  161 (292)
T COG0790         123 RGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSG  161 (292)
T ss_pred             CCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Confidence               559999999999999985544 34477777776553

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=90.31  E-value=15  Score=33.92  Aligned_cols=117  Identities=12%  Similarity=-0.027  Sum_probs=84.1

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH-
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR-   80 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-   80 (320)
                      .+|.+..+|+.+-..+..+ .+++....|++.+...|..+.+|......-....+|+.-...|.++|..-= +.+.|.. 
T Consensus        15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lY   92 (656)
T KOG1914|consen   15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLY   92 (656)
T ss_pred             cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHH
Confidence            4788999999998777766 999999999999999999999999999999999999999999999986422 1333322 


Q ss_pred             HHHHHHHccCHHHH----HHHHHHHHh---hCCCCHHHHHHHHHHHH
Q 020914           81 KGCILEAMEQYDDA----LSAFQTALQ---YNPQSAEVSRKIKRVSQ  120 (320)
Q Consensus        81 lg~~~~~~~~~~~A----~~~~~~al~---~~p~~~~~~~~l~~~~~  120 (320)
                      +.-+-...|+...+    .+.|+-++.   .++.....|...+..+.
T Consensus        93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~  139 (656)
T KOG1914|consen   93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLE  139 (656)
T ss_pred             HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence            12222233333332    344444444   35666677776665543

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=90.20  E-value=11  Score=32.41  Aligned_cols=96  Identities=9%  Similarity=-0.004  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----------------
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-----------------   71 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----------------   71 (320)
                      .-+..-....+..+..+-|+.-..|++++|..+.++..++.-  ...-..+|...+++|++.-                 
T Consensus       186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~  263 (556)
T KOG3807|consen  186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH  263 (556)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence            344455566778888888999999999999999999888753  2233456777777776541                 


Q ss_pred             ------CCCHHH--HHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 020914           72 ------PQWEKG--YFRKGCILEAMEQYDDALSAFQTALQYNP  106 (320)
Q Consensus        72 ------p~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~p  106 (320)
                            ..+...  -..++.|-.++|+..+|++.|+...+-.|
T Consensus       264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence                  012233  34578999999999999999998877766

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.03  E-value=0.74  Score=40.86  Aligned_cols=60  Identities=17%  Similarity=0.186  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQD---------PSNPTLFSNRAAAFLHLVKLNKALADAETTIS   69 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   69 (320)
                      ++..+.+++.-.|+|..|++..+- |+++         +-+...++..|-+|..+++|.+|+..|..+|.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566778888999999999999764 3332         22467899999999999999999999998875

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=89.85  E-value=34  Score=37.44  Aligned_cols=86  Identities=21%  Similarity=0.190  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHc
Q 020914           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG-CILEAM   88 (320)
Q Consensus        10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg-~~~~~~   88 (320)
                      +.+.-...-..|++..|..+|++++..+|+....+...-.+-...|.++..+...+-.....++...-|+.+| .+-.++
T Consensus      1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence            3444445567799999999999999999998877777777777888888888877766666665555555544 333555


Q ss_pred             cCHHHHH
Q 020914           89 EQYDDAL   95 (320)
Q Consensus        89 ~~~~~A~   95 (320)
                      ++++.-.
T Consensus      1532 ~qwD~~e 1538 (2382)
T KOG0890|consen 1532 SQWDLLE 1538 (2382)
T ss_pred             cchhhhh
Confidence            5555433

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=89.67  E-value=4  Score=33.92  Aligned_cols=55  Identities=20%  Similarity=0.159  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHH
Q 020914           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQ------WEKGYFRKGCILEAMEQYDDALSA   97 (320)
Q Consensus        43 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~~~~~~~~A~~~   97 (320)
                      +...+|.-|...|+|++|+..|+.+......      ...+...+-.|+..+|+.++.+..
T Consensus       180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~  240 (247)
T PF11817_consen  180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT  240 (247)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            3445555555555555555555555433221      123344444555555555554443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.52  E-value=18  Score=33.66  Aligned_cols=112  Identities=16%  Similarity=0.114  Sum_probs=78.7

Q ss_pred             cCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----C-----------
Q 020914           20 AGNYLKAAALYTQAIKQ------------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-----N-----------   71 (320)
Q Consensus        20 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~-----------   71 (320)
                      ...|++|...|.-|...            .|.+...+..++.++..+|+.+-|....+++|--     .           
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            45678888888877654            3556789999999999999998888877777632     2           


Q ss_pred             -----CCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-HHHHHHHHHHH
Q 020914           72 -----PQWEK---GYFRKGCILEAMEQYDDALSAFQTALQYNPQ-SAEVSRKIKRVSQ-LAKDKKRAQEV  131 (320)
Q Consensus        72 -----p~~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~-~~~~~~~A~~~  131 (320)
                           |.|-.   +.+..-.-+.+.|-+.-|.+..+-.+.++|. ++.+...+-.++. ...+|+--+++
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~  400 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIEL  400 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHH
Confidence                 22222   3344445566789999999999999999998 7766555554443 44555555544

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.14  E-value=4.2  Score=35.87  Aligned_cols=109  Identities=17%  Similarity=0.109  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------C-CCHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS---NPTLFSNRAAAFLHLVKLNKALADAETTISLN-------P-QWEK   76 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p-~~~~   76 (320)
                      .++-.+|..|...|+++.|+.+|.++-..-.+   ....+.+.-.+-..+|+|..-..+..+|.+--       + -.+.
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k  230 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK  230 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence            57888999999999999999999996554332   25778888888889999998888888887641       0 0234


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHH
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIK  116 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~  116 (320)
                      +...-|.+...+++|..|.++|-.+..-        .|.+..++..+.
T Consensus       231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLc  278 (466)
T KOG0686|consen  231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLC  278 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhH
Confidence            5566677788888999999988766542        455555555543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.13  E-value=6.4  Score=39.26  Aligned_cols=102  Identities=13%  Similarity=0.159  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914            8 MSLKDKGNEFFKA----G---NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (320)
Q Consensus         8 ~~~~~~g~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   80 (320)
                      ++.+..|..+..+    |   .+++|+..|++. .-.|.-|-=|.+.|.+|.++|+|++-+++|.-|++..|++|..-..
T Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (932)
T PRK13184        513 EAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL  591 (932)
T ss_pred             HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence            5677778777643    2   477888888763 3456667779999999999999999999999999999998865444


Q ss_pred             HHHHHHHc-----cCHHHHHHHHHHHHhhCCCCHH
Q 020914           81 KGCILEAM-----EQYDDALSAFQTALQYNPQSAE  110 (320)
Q Consensus        81 lg~~~~~~-----~~~~~A~~~~~~al~~~p~~~~  110 (320)
                      .-.+-.++     .+-..|....--++.+-|....
T Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (932)
T PRK13184        592 RDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS  626 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            43333322     1233455555666777776543

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.10  E-value=2  Score=32.19  Aligned_cols=55  Identities=9%  Similarity=0.021  Sum_probs=41.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      -.+.....+.-.+..|++.-|.+....++..+|++..+....+.++..+|...+.
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~  123 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN  123 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence            3455566777778889999999999999999999999999999988888776553

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=89.01  E-value=0.42  Score=40.99  Aligned_cols=79  Identities=14%  Similarity=0.064  Sum_probs=65.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 020914           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME   89 (320)
Q Consensus        11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~   89 (320)
                      .+.+.+-+..+.+..|+..-..+++.++....+++.++..+..+.++++|++.+..+....|++......+..+-....
T Consensus       279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~  357 (372)
T KOG0546|consen  279 RNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK  357 (372)
T ss_pred             cchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence            3456677778888888888888888899999999999999999999999999999999999999877665554444333

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.01  E-value=4.2  Score=26.63  Aligned_cols=28  Identities=11%  Similarity=0.143  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           92 DDALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        92 ~~A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      .+|++.+.++++..|+++........+.
T Consensus        30 ~~aIe~L~q~~~~~pD~~~k~~yr~ki~   57 (75)
T cd02682          30 KKAIEVLSQIVKNYPDSPTRLIYEQMIN   57 (75)
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            3344455555666777776554444443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=88.95  E-value=2.2  Score=40.24  Aligned_cols=84  Identities=15%  Similarity=0.166  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      ...+++.+.|..+.....|++|.++|.+.-        -.-+...|++++++|++-    +.....-|++.+.+-.+|+.
T Consensus       794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~--------~~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~m  861 (1189)
T KOG2041|consen  794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCG--------DTENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADM  861 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHH
Confidence            345789999999999999999999998752        234567788888887654    44455568888899999999


Q ss_pred             HHHccCHHHHHHHHHH
Q 020914           85 LEAMEQYDDALSAFQT  100 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~  100 (320)
                      +...|.-++|+++|-+
T Consensus       862 f~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  862 FTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHhhchHHHHHHHHHh
Confidence            9999999999988865

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=88.87  E-value=4.4  Score=34.79  Aligned_cols=95  Identities=20%  Similarity=0.219  Sum_probs=68.3

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 020914           22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRKGCILEAMEQYDDALSAFQ   99 (320)
Q Consensus        22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~   99 (320)
                      +|..-...|+-...+.| ++.+-.|++.+..+..=.+.++...+-...-  -.++...+-.+|..+.++|+.++|...|+
T Consensus       311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd  389 (415)
T COG4941         311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD  389 (415)
T ss_pred             ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence            45544444554444444 4666677777777777777777777665554  23456677889999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHH
Q 020914          100 TALQYNPQSAEVSRKIKR  117 (320)
Q Consensus       100 ~al~~~p~~~~~~~~l~~  117 (320)
                      +++.+.++..+..+....
T Consensus       390 rAi~La~~~aer~~l~~r  407 (415)
T COG4941         390 RAIALARNAAERAFLRQR  407 (415)
T ss_pred             HHHHhcCChHHHHHHHHH
Confidence            999999988876655443

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=88.85  E-value=2.9  Score=30.21  Aligned_cols=66  Identities=18%  Similarity=0.129  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHH----HHh
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAET----TIS   69 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~----al~   69 (320)
                      .+..+|+..++.+++-.++-.|++|+.+..+-               .....++|..++..|+.+=.+.+++-    ++.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            35678888999999999999999998652211               34566777777777777777777643    344


Q ss_pred             cCCCC
Q 020914           70 LNPQW   74 (320)
Q Consensus        70 l~p~~   74 (320)
                      +-|..
T Consensus        83 LiPQC   87 (140)
T PF10952_consen   83 LIPQC   87 (140)
T ss_pred             hccCC
Confidence            55543

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=88.68  E-value=5.9  Score=34.97  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CC--CCHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DP-SNPTLFSNRAAAFLHLVKLNKALADAETTISL--NP--QWEK   76 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p--~~~~   76 (320)
                      +..|+-...++-..|+...-...+..-+..     +. ..+...+.+=.+|..-+.|+.|-....++.--  ..  ..+.
T Consensus       169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR  248 (493)
T KOG2581|consen  169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence            455667777777778766555555444432     22 22456777888999999999998887776522  12  2355


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  109 (320)
                      ..+.+|.+..-+++|..|.++|-+|+...|.+.
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            677899999999999999999999999999853

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.57  E-value=19  Score=32.81  Aligned_cols=85  Identities=13%  Similarity=-0.010  Sum_probs=45.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHH-------HHHHHhc-----------CCCCHH
Q 020914           16 EFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALAD-------AETTISL-----------NPQWEK   76 (320)
Q Consensus        16 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~l-----------~p~~~~   76 (320)
                      .....|+++++....... ++-|.- ......++..+.+.|-++.|+..       |+-||++           ..+++.
T Consensus       270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~  348 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPE  348 (443)
T ss_dssp             HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHH
T ss_pred             HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHH
Confidence            334556666655554311 111221 23344455555555555555443       2222222           235788


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHH
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTA  101 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~a  101 (320)
                      .|..+|......|+++-|.++|+++
T Consensus       349 ~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  349 KWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            9999999999999999999999875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.15  E-value=22  Score=33.06  Aligned_cols=100  Identities=17%  Similarity=0.080  Sum_probs=72.7

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCC----------------CH---HHHHHHHHHHHHccCH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIK-----QDPS----------------NP---TLFSNRAAAFLHLVKL   57 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~----------------~~---~~~~~lg~~~~~~g~~   57 (320)
                      ++|=+.+.+..++.+...+|+.+.|....+++|=     ..|.                +-   -+++..-..+.+.|.+
T Consensus       279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~  358 (665)
T KOG2422|consen  279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW  358 (665)
T ss_pred             cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence            5788999999999999999999999999888872     2222                21   2334444566678999


Q ss_pred             HHHHHHHHHHHhcCCC-CHHHHHHHHHHH-HHccCHHHHHHHHHHH
Q 020914           58 NKALADAETTISLNPQ-WEKGYFRKGCIL-EAMEQYDDALSAFQTA  101 (320)
Q Consensus        58 ~~A~~~~~~al~l~p~-~~~~~~~lg~~~-~~~~~~~~A~~~~~~a  101 (320)
                      .-|.+.+.-.++++|. +|-+...+-++| .+..+|+==|+.++..
T Consensus       359 rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~  404 (665)
T KOG2422|consen  359 RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP  404 (665)
T ss_pred             HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            9999999999999998 776655555444 3445566555555544

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.93  E-value=5.3  Score=32.25  Aligned_cols=59  Identities=20%  Similarity=0.172  Sum_probs=35.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 020914           16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW   74 (320)
Q Consensus        16 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   74 (320)
                      .+.+.+..++|+...+.-++-+|.+......+-..+.-.|+|++|..-++-+-.+.|++
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            34555566666666666666666666555555555666666666666666666666654

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=87.84  E-value=15  Score=34.46  Aligned_cols=88  Identities=15%  Similarity=0.098  Sum_probs=70.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 020914           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA   94 (320)
Q Consensus        15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A   94 (320)
                      ..+-++...+.+....+.-+.-....+......+..+...|..++|-.+|++.+..+|+  .+++..+.-+.+.|-..+|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   93 (578)
T PRK15490         16 LTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDA   93 (578)
T ss_pred             HHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHH
Confidence            33445666777777777655555556778888999999999999999999999999998  7888889999999999888


Q ss_pred             HHHHHHHHhhCCC
Q 020914           95 LSAFQTALQYNPQ  107 (320)
Q Consensus        95 ~~~~~~al~~~p~  107 (320)
                      ...++   ++.|.
T Consensus        94 ~~~~~---~~~~~  103 (578)
T PRK15490         94 QLILK---KVSNG  103 (578)
T ss_pred             HHHHH---HhCcc
Confidence            88877   45555

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=87.57  E-value=28  Score=33.59  Aligned_cols=22  Identities=18%  Similarity=0.049  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 020914          112 SRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus       112 ~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                      +...|.++....++++|.+.+.
T Consensus       664 ydkagdlfeki~d~dkale~fk  685 (1636)
T KOG3616|consen  664 YDKAGDLFEKIHDFDKALECFK  685 (1636)
T ss_pred             HHhhhhHHHHhhCHHHHHHHHH
Confidence            4444555555556666655543

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=87.02  E-value=19  Score=32.09  Aligned_cols=62  Identities=15%  Similarity=0.186  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--HHHH--HHHHHHHccCHHHHHHHHHHHHhc
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT--LFSN--RAAAFLHLVKLNKALADAETTISL   70 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~--lg~~~~~~g~~~~A~~~~~~al~l   70 (320)
                      --...+..++..++|..|...+......-|....  .+..  .|..++..-++.+|.+.++..+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5567788899999999999999999875333333  3333  466677888999999999988765

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.75  E-value=1.5  Score=25.43  Aligned_cols=25  Identities=8%  Similarity=0.122  Sum_probs=22.4

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           79 FRKGCILEAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        79 ~~lg~~~~~~~~~~~A~~~~~~al~  103 (320)
                      +.+|.+|..+|+.+.|.+.++..+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999999999999885

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.49  E-value=8.7  Score=31.05  Aligned_cols=62  Identities=19%  Similarity=0.206  Sum_probs=55.8

Q ss_pred             HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 020914           49 AAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE  110 (320)
Q Consensus        49 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  110 (320)
                      .-+.+.+..++|+...+.-++-+|.+......+-+++.-.|++++|...++-+-++.|++..
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            34667788999999999999999999999999999999999999999999999999998754

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.66  E-value=1.8  Score=25.07  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=22.7

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           45 SNRAAAFLHLVKLNKALADAETTIS   69 (320)
Q Consensus        45 ~~lg~~~~~~g~~~~A~~~~~~al~   69 (320)
                      +.+|.+|..+|+.+.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999999999999985

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=85.54  E-value=2.8  Score=26.89  Aligned_cols=28  Identities=43%  Similarity=0.534  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAI   34 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al   34 (320)
                      +..+...|...=..|++++|+.+|.+++
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai   32 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAI   32 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4445555555555566666555555554

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.50  E-value=2.3  Score=27.99  Aligned_cols=30  Identities=17%  Similarity=0.270  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIK   35 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~   35 (320)
                      .+..+..+|...=..|+|++|+.+|..+++
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie   34 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            344555555666666666666666665554

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.32  E-value=2.6  Score=27.82  Aligned_cols=27  Identities=15%  Similarity=0.298  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQA   33 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~a   33 (320)
                      +..+...|...=..|+|++|+.+|.++
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~a   32 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEG   32 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            344444444444455555554444443

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=85.27  E-value=1.7  Score=27.87  Aligned_cols=18  Identities=22%  Similarity=0.628  Sum_probs=11.1

Q ss_pred             HHccCHHHHHHHHHHHHh
Q 020914           86 EAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~  103 (320)
                      -..|++++|+.+|.+++.
T Consensus        16 D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen   16 DEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHTTSHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            356666666666666555

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.06  E-value=1.9  Score=28.44  Aligned_cols=17  Identities=24%  Similarity=0.376  Sum_probs=10.3

Q ss_pred             HccCHHHHHHHHHHHHh
Q 020914           87 AMEQYDDALSAFQTALQ  103 (320)
Q Consensus        87 ~~~~~~~A~~~~~~al~  103 (320)
                      ..|+|++|+.+|+.+++
T Consensus        18 ~~g~y~eA~~~Y~~aie   34 (76)
T cd02681          18 QEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HccCHHHHHHHHHHHHH
Confidence            45666666666666555

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.86  E-value=2  Score=28.48  Aligned_cols=35  Identities=11%  Similarity=0.240  Sum_probs=24.6

Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           55 VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        55 g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      +.|++|..+.++||..+               ..|+.++|+.+|++++..
T Consensus         3 ~~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~   37 (79)
T cd02679           3 GYYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRE   37 (79)
T ss_pred             hHHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHH
Confidence            34677777777777665               447778888888877764

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=84.59  E-value=7  Score=32.44  Aligned_cols=62  Identities=16%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS------NPTLFSNRAAAFLHLVKLNKALADAETTI   68 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al   68 (320)
                      ......+|..++..|+|++|+++|+.+......      ...+...+-.|+..+|+.+..+...-+.+
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            345678999999999999999999999755332      25778889999999999999888765544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=83.29  E-value=11  Score=33.27  Aligned_cols=42  Identities=29%  Similarity=0.202  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 020914           23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA   64 (320)
Q Consensus        23 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   64 (320)
                      .-+|+..++.++..+|.+..+...+..+|..+|-.+.|...|
T Consensus       199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~  240 (365)
T PF09797_consen  199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHY  240 (365)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            344555555555555555555555555555555555555555

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=83.02  E-value=2.4  Score=34.58  Aligned_cols=92  Identities=22%  Similarity=0.169  Sum_probs=55.8

Q ss_pred             HHHcCCHHHHHHHHHHHHhcC---CCC---------HHHHHHHHHHHHHccCHH-HH-HHHHHHHHhc--CCCC--HHHH
Q 020914           17 FFKAGNYLKAAALYTQAIKQD---PSN---------PTLFSNRAAAFLHLVKLN-KA-LADAETTISL--NPQW--EKGY   78 (320)
Q Consensus        17 ~~~~g~~~~A~~~~~~al~~~---p~~---------~~~~~~lg~~~~~~g~~~-~A-~~~~~~al~l--~p~~--~~~~   78 (320)
                      .+..|+|+.|++....||+.+   |+.         ++-...-+..-...|+.- -. ...+.....-  -|+.  ++.|
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~  172 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY  172 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence            356799999999999999875   322         122333444444455421 11 1112222110  1333  3456


Q ss_pred             HHHHHHHH---------HccCHHHHHHHHHHHHhhCCCC
Q 020914           79 FRKGCILE---------AMEQYDDALSAFQTALQYNPQS  108 (320)
Q Consensus        79 ~~lg~~~~---------~~~~~~~A~~~~~~al~~~p~~  108 (320)
                      -..|..+.         ..++...|+.++++|+.++|..
T Consensus       173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~  211 (230)
T PHA02537        173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC  211 (230)
T ss_pred             HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence            66677773         4578889999999999999864

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.47  E-value=3.2  Score=27.21  Aligned_cols=33  Identities=12%  Similarity=0.205  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           57 LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        57 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      .++|+....+|+.-|               ..|+|++|+..|..+++.
T Consensus         3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~   35 (75)
T cd02680           3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL   35 (75)
T ss_pred             HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence            345555555555444               567788888888777764

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.77  E-value=35  Score=31.54  Aligned_cols=65  Identities=8%  Similarity=0.043  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCC
Q 020914           43 LFSNRAAAFLHLVKLNKALADAETTISL---NPQ----WEKGYFRKGCILEAMEQ-YDDALSAFQTALQYNPQ  107 (320)
Q Consensus        43 ~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~----~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~  107 (320)
                      -+..+|.++..+|+...|..+|..+++.   ...    .|.++|.+|..+..++. ..+|...+.+|-....+
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d  523 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD  523 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence            3566899999999999999999888732   111    36789999999999988 99999999988776543

>PF12854 PPR_1: PPR repeat

Probab=81.15  E-value=5.4  Score=21.40  Aligned_cols=26  Identities=4%  Similarity=0.116  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAET   66 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~   66 (320)
                      ...|..+-..|.+.|+.++|++.|++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            44555555555555666655555543

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.12  E-value=9.8  Score=33.97  Aligned_cols=96  Identities=19%  Similarity=0.168  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHccCHH----------HHHHHHHHH
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQ-----------DPSNPTLFSNRAAAFLHLVKLN----------KALADAETT   67 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~a   67 (320)
                      .++.+|...+....|.+|+.++-.|=+.           -.+.+-.-..+.+||+.+.+..          -|...|.++
T Consensus       165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s  244 (568)
T KOG2561|consen  165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS  244 (568)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence            5778889999999999999887766433           3344556667788999887642          333333332


Q ss_pred             H--------hcC-CCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           68 I--------SLN-PQWE------KGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        68 l--------~l~-p~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      -        .+. |..+      ..+..-|.+.+++|+-++|.++++.+...
T Consensus       245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~  296 (568)
T KOG2561|consen  245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK  296 (568)
T ss_pred             hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            1        111 2222      34566699999999999999999998764

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=80.11  E-value=46  Score=30.19  Aligned_cols=78  Identities=15%  Similarity=0.048  Sum_probs=58.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 020914           29 LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP  106 (320)
Q Consensus        29 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  106 (320)
                      -++.-|+-+|++...|+.+-.-|-.+|.+++-.+.|++...-.|-.+.+|...-.--...++|..-...|.++|...-
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l  107 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL  107 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence            455567778888888888888888888888888888888888887777775544333445677777777777776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	320
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		1e-19
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		2e-18
1wao_1	477	Pp5 Structure Length = 477		1e-14
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		2e-14
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		1e-13
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		8e-13
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		3e-12
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		1e-10
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		2e-10
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		2e-09
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		1e-08
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		2e-08
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		2e-08
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		3e-08
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		3e-08
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		3e-07
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-07
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-06
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		2e-06
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		6e-06
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		2e-05
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		4e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		4e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		6e-05
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		6e-05
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		1e-04
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		1e-04
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		3e-04

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 66/106 (62%)
Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K+KGNE+FK G+Y  A   Y +A+K+DP N  L+SNRAA    L++  +AL D +T I L
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116
           + ++ KGY RK   L AM ++  A  A++ ALQ +P + E    ++
Sbjct: 77  DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 66/111 (59%)
Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           + +K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL D E  
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 76
Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
           I L P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R 
Sbjct: 77  IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
           AEE  LK + N++FKA +Y  A   Y+QAI+ +PSN   + NR+ A+L       AL DA
Sbjct: 6   AEE--LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63
Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124
              I L+ ++ KGY+R+     A+ ++  AL  ++T ++  P   +   K +  +++ K 
Sbjct: 64  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 123
Query: 125 KKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE--ECWKHVFSFVVETME 173
           K   + +        +V  LD     + ++Y     E  K   SF+ E M+
Sbjct: 124 KAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQ 174

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           LK+KGN+    GN   A   Y++AIK DP N  L+SNR+AA+       KA  D   T+ 
Sbjct: 7   LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY---NPQSAE 110
           L P W KGY RK   LE + ++++A   ++  L++   NPQ  E
Sbjct: 67  LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
           AEE  LK + N++FKA +Y  A   Y+QAI+ +PSN   + NR+ A+L       AL DA
Sbjct: 13  AEE--LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 70
Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124
              I L+ ++ KGY+R+     A+ ++  AL  ++T ++  P   +   K +  +++ K 
Sbjct: 71  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 130
Query: 125 KKRAQEV---ENIRSNVD 139
           K   + +   E+ RS VD
Sbjct: 131 KAFERAIAGDEHKRSVVD 148

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 59/104 (56%)
Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
           AE   LK +GNE  K  N+  A   Y +AI+ +P+N   F NRAAA+  L     A+ D 
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108
           E  I ++P + K Y R G  L ++ ++ +A++ ++ AL+ +P +
Sbjct: 70  ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           LK++GN  F    Y +AAA Y +AI ++P     ++NRA  +L + +  +ALAD    + 
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 70  LNPQWEKGYFRKG-CILEAMEQYDDALSAFQTA 101
           L+ Q  K +F  G C LE ME YD+A++  Q A
Sbjct: 67  LDGQSVKAHFFLGQCQLE-MESYDEAIANLQRA 98

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           LK++GN  F    Y +AAA Y +AI ++P     ++NRA  +L + +  +ALAD    + 
Sbjct: 12  LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71
Query: 70  LNPQWEKGYFRKG-CILEAMEQYDDALSAFQTA 101
           L+ Q  K +F  G C LE ME YD+A++  Q A
Sbjct: 72  LDGQSVKAHFFLGQCQLE-MESYDEAIANLQRA 103

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 51/103 (49%)
Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKA 60
           MA   E   LK +GN       Y KA  LYTQA+   P+NP   SNRAAA+    +  KA
Sbjct: 5   MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKA 64
Query: 61  LADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103
             DAE    ++P++ K + R G     M  Y  A  A++  ++
Sbjct: 65  AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 57/112 (50%)
Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           + K+ GN ++K G+Y KA   Y +A++ DP+N + + N   A+       KA+   +  +
Sbjct: 11  AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
            L+P   K ++R+G        Y  A+  +Q AL+ +P +A+  + +    Q
Sbjct: 71  ELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQ 122

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
           AEE  L+  G E+F   ++  A   YT+ IK+ P +   +SNRAAA   L+   +A+AD 
Sbjct: 4   AEEARLE--GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA 101
              I  +P + + Y RK     A+++Y  AL     A
Sbjct: 62  NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
           AEE  L+  G E+F   ++  A   YT+ IK+ P +   +SNRAAA   L+   +A+AD 
Sbjct: 139 AEEARLE--GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196
Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA 101
              I  +P + + Y RK     A+++Y  AL     A
Sbjct: 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
           +A  + LK++GN FF A N+ +A   Y  AI+ DP+ P  +SN +A ++    L K +  
Sbjct: 18  QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEF 77
Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDA---LSAFQTALQYNPQSAE--VSRKIKRV 118
               + + P   K   R+    E++  + DA   LS       ++  S E  + R + + 
Sbjct: 78  TTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQ 137
Query: 119 S------QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEM 151
           +       L+KD+ R  +V  + SN  +      F S +
Sbjct: 138 AMKVLNENLSKDEGRGSQV--LPSNTSLASFFGIFDSHL 174

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
           +A  + LK++GN FF A N+ +A   Y  AI+ DP+ P  +SN +A ++    L K +  
Sbjct: 22  QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEF 81
Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDA---LSAFQTALQYNPQSAE--VSRKIKRV 118
               + + P   K   R+    E++  + DA   LS       ++  S E  + R + + 
Sbjct: 82  TTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQ 141
Query: 119 S------QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEM 151
           +       L+KD+ R  +V  + SN  +      F S +
Sbjct: 142 AMKVLNENLSKDEGRGSQV--LPSNTSLASFFGIFDSHL 178

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPS---NPTLFSNRAAAFLHLVKLNKALADAET 66
           L+ +GNE FK G+Y  A A YTQA+  D +      L  NRAA  L L   +KA  +A  
Sbjct: 31  LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASK 90
Query: 67  TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119
            I  +    K  +R+   LE + + D A+   Q  +   P++      ++ +S
Sbjct: 91  AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%)
Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           GN ++K G+Y +A   Y +A++ DP+N   + N   A+      ++A+   +  + L+P 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
             + ++  G        YD+A+  +Q AL+ +P +AE  + +    Q
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 52/98 (53%)
Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           GN ++K G+Y +A   Y +A++ DP +   + N   A+      ++A+   +  + L+P+
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
             + ++  G        YD+A+  +Q AL+ +P+SAE 
Sbjct: 68  SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 10  LKDKGNEFFKAGNYLKAAALYTQAI-----------KQDPSNPTL----FSNRAAAFLHL 54
           +K+KG  +FK G Y++A   Y + +           K+  ++ +     F N A  +L L
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 55  VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
            +  KA+   +  + L+   EKG +R+G     M +++ A   F+  L+ NPQ+     +
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 115 IKRVSQLAKD 124
           I    + AK+
Sbjct: 391 ISMCQKKAKE 400

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 10  LKDKGNEFFKAGNYLKAAALYTQAI-----------KQDPSNPTL----FSNRAAAFLHL 54
           +K+KG  +FK G Y++A   Y + +           K+  ++ +     F N A  +L L
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 55  VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
            +  KA+   +  + L+   EKG +R+G     M +++ A   F+  L+ NPQ+     +
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 115 IKRVSQLAKD 124
           I    + AK+
Sbjct: 391 IFMCQKKAKE 400

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 8  MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
          ++LKDKGN+FF+   Y  A   Y  A++    +P  +SN +A ++ +  L K +  +   
Sbjct: 7  LALKDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65
Query: 68 ISLNPQWEKGYFRKGCILEAMEQYDDAL 95
          + L P + K   R+    E + ++ DA+
Sbjct: 66 LELKPDYSKVLLRRASANEGLGKFADAM 93

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           G +   AG    A + +  A+  DP N   +  RA  FL   K   AL D    I+L   
Sbjct: 10  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXD 69
Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133
           +     ++G +L    + D+A   F+  L+ NP   E   + +  SQL K    A E + 
Sbjct: 70  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE---EKEAESQLVK----ADEXQR 122
Query: 134 IRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAV 176
           +RS     Q LD F        GA+  +    +F+ + +E  V
Sbjct: 123 LRS-----QALDAFD-------GAD--YTAAITFLDKILEVCV 151

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 51/107 (47%)
Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           GN ++K G+Y +A   Y +A++  P+N   + N   A+      ++A+   +  + L P 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
             + ++  G        YD+A+  +Q AL+  P +AE  + +    Q
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQ 122

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 41/97 (42%)
Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           G +   AG    A + +  A+  DP N   +  RA  FL + K   AL D    I L   
Sbjct: 33  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92
Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +     ++G +L    + D+A   F+  L+ NP   E
Sbjct: 93  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE 129

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
          K++GN  FK G Y +A   Y Q I   P NP  +SN+A A + L +  +A+
Sbjct: 8  KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAI 58

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 49/110 (44%)
Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           SL +  N   + GN  +A  LY +A++  P      SN A+      KL +AL   +  I
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
            ++P +   Y   G  L+ M+    AL  +  A+Q NP  A+    +  +
Sbjct: 71  RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 40/97 (41%)
Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           G +   AG    A + +  A+  DP N   +  RA  FL   K   AL D    I L   
Sbjct: 33  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXD 92
Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +     ++G +L    + D+A   F+  L+ NP   E
Sbjct: 93  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE 129

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 49/107 (45%)
Query: 12  DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
           D GN     G   +A A Y +AI+  P+    +SN    F    ++  A+   E  ++L+
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
           P +   Y   G +L+    +D A++A+  AL  +P  A V   +  V
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	320
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	8e-45
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-44
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	6e-44
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-44
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-43
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	4e-43
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-43
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-42
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	8e-42
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	8e-35
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-34
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-32
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-32
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-28
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-21
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-28
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-25
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-27
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-24
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-25
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-24
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	3e-19
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-19
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-19
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-18
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-17
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-10
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-12
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-17
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-16
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-14
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-15
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-07
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-15
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-15
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-15
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-14
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-12
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-10
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-11
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	5e-11
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	5e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	5e-08
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-07
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	2e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-04

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  149 bits (378), Expect = 8e-45
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 2/153 (1%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
             AEE  LK + N++FKA +Y  A   Y+QAI+ +PSN   + NR+ A+L       AL 
Sbjct: 11  KRAEE--LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 68

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122
           DA   I L+ ++ KGY+R+     A+ ++  AL  ++T ++  P   +   K +  +++ 
Sbjct: 69  DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 128

Query: 123 KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY 155
           K K   + +        +V  LD     + ++Y
Sbjct: 129 KQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 161

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  146 bits (370), Expect = 3e-44
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 2/117 (1%)

Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
           +  E  LK+KGN+    GN   A   Y++AIK DP N  L+SNR+AA+       KA  D
Sbjct: 3   QVNE--LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60

Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
              T+ L P W KGY RK   LE + ++++A   ++  L++   + ++   ++ +  
Sbjct: 61  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  145 bits (369), Expect = 6e-44
 Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 2/118 (1%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
             A+E   K+KGNE+FK G+Y  A   Y +A+K+DP N  L+SNRAA    L++  +AL 
Sbjct: 11  ELAQE--EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
           D +T I L+ ++ KGY RK   L AM ++  A  A++ ALQ +P + E    ++   +
Sbjct: 69  DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  145 bits (369), Expect = 7e-44
 Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
             A    +K+KGNE F+ G+Y +A   YT+AIK++P +  L+SNRAA +  L++   AL 
Sbjct: 14  DLALM--VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122
           D E  I L P + KGY RK   LEAM+ Y  A+  +Q AL  +    E +   +R     
Sbjct: 72  DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131

Query: 123 KD 124
            +
Sbjct: 132 YN 133

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  145 bits (367), Expect = 4e-43
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 4/133 (3%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
             E+++  LK +GN       Y KA  LYTQA+   P+NP   SNRAAA+    +  KA 
Sbjct: 8   TPESDK--LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAA 65

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP--QSAEVSRKIKRVS 119
            DAE    ++P++ K + R G     M  Y  A  A++  ++      S  + R ++   
Sbjct: 66  EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125

Query: 120 QLAKDKKRAQEVE 132
           +  ++  R  E  
Sbjct: 126 RKIEEANRGAEPP 138

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  143 bits (364), Expect = 4e-43
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 4/135 (2%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           +  A+E  LK++GN  F    Y +AAA Y +AI ++P     ++NRA  +L + +  +AL
Sbjct: 6   SPSAQE--LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL 63

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-VSRKIKRVSQ 120
           AD    + L+ Q  K +F  G     ME YD+A++  Q A     +        I    +
Sbjct: 64  ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 123

Query: 121 LAKDKKRAQEVENIR 135
           +AK KKR   +E  R
Sbjct: 124 IAK-KKRWNSIEERR 137

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  148 bits (375), Expect = 5e-43
 Identities = 51/236 (21%), Positives = 89/236 (37%), Gaps = 10/236 (4%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           +  A+E  LK++GN  F    Y +AAA Y +AI ++P     ++NRA  +L + +  +AL
Sbjct: 1   SPSAQE--LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL 58

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121
           AD    + L+ Q  K +F  G     ME YD+A++  Q A     +           +  
Sbjct: 59  ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118

Query: 122 AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE 181
              KKR   +E  R + +   H    +   +E+    E  +       +      +    
Sbjct: 119 IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178

Query: 182 TSKVDAKVYFLLDKEKTDTEKYAPIVNVD--------KAFESPHTHGSCFQFLRQY 229
            +K D  +  + +      EK       D        +    P    S   + R+ 
Sbjct: 179 EAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKD 234

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  141 bits (357), Expect = 5e-42
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
           AEAE   LK +GNE  K  N+  A   Y +AI+ +P+N   F NRAAA+  L     A+ 
Sbjct: 10  AEAER--LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122
           D E  I ++P + K Y R G  L ++ ++ +A++ ++ AL+ +P +      +K      
Sbjct: 68  DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127

Query: 123 KD 124
           ++
Sbjct: 128 RE 129

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  140 bits (355), Expect = 8e-42
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           + +AEE   + +G E+F   ++  A   YT+ IK+ P +   +SNRAAA   L+   +A+
Sbjct: 1   SMKAEE--ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI 58

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP--QSAEVSRKIKRVS 119
           AD    I  +P + + Y RK     A+++Y  AL     A   +    +   +R+I ++ 
Sbjct: 59  ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118

Query: 120 QLAKDKK 126
             A  ++
Sbjct: 119 YKASQQR 125

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  134 bits (339), Expect = 4e-39
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS---NPTLFSNRAAAFLHLVKLN 58
           A+  E+  L+ +GNE FK G+Y  A A YTQA+  D +      L  NRAA  L L   +
Sbjct: 25  ASSVEQ--LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD 82

Query: 59  KALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
           KA  +A   I  +    K  +R+   LE + + D A+   Q  +   P++      ++ +
Sbjct: 83  KAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142

Query: 119 S 119
           S
Sbjct: 143 S 143

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  122 bits (308), Expect = 8e-35
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
             +A +   K+ GN+ +K  ++  A   Y +A + DP+N T  +N+AA +      NK  
Sbjct: 1   GKQALK--EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCR 58

Query: 62  ADAETTISLNPQWE-------KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
              E  I +  +         K Y R G      E+Y DA+  +  +L  +  + +V +K
Sbjct: 59  ELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKK 117

Query: 115 IKRVSQLAKDKKR 127
            ++  ++ K+++R
Sbjct: 118 CQQAEKILKEQER 130

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  119 bits (301), Expect = 5e-34
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 3/112 (2%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
           ++ E+   K++GN  FK G Y +A   Y Q I   P NP  +SN+A A + L +  +A+ 
Sbjct: 2   SQFEK--QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
             +  +      E    R       +E    A+ + Q  +    +  E   +
Sbjct: 60  MCQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGYDR 110

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  124 bits (313), Expect = 2e-32
 Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 19/233 (8%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
              AEE  LK + N++FKA +Y  A   Y+QAI+ +PSN   + NR+ A+L       AL
Sbjct: 3   LKRAEE--LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121
            DA   I L+ ++ KGY+R+     A+ ++  AL  ++T ++  P   +   K +  +++
Sbjct: 61  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120

Query: 122 AK--DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMET--AVK 177
            K    +RA   +  + +V     ++    E        E  K   SF+ E M+     K
Sbjct: 121 VKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQK 180

Query: 178 SWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-----HGSCFQF 225
             H         Y +L + K    K + +V          T     HG   QF
Sbjct: 181 KLHR-----KCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHG---QF 225

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  115 bits (289), Expect = 5e-32
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKA 60
           M   A     KD GN  +K  ++ KA   Y +AI+ DPSN T ++N+AA +    K  + 
Sbjct: 4   MTDAAIA--EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61

Query: 61  LADAETTISLNPQWE-------KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113
           +   E  + +  +         K   R G   +       A+  F  +L       E+ +
Sbjct: 62  VQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120

Query: 114 KIKRV 118
           K+K +
Sbjct: 121 KVKEL 125

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  109 bits (276), Expect = 1e-28
 Identities = 29/100 (29%), Positives = 49/100 (49%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           + +G E+F   ++  A   YT+ IK+ P +   +SNRAAA   L+   +A+AD    I  
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +P + + Y RK     A+++Y  AL     A   + +   
Sbjct: 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 242

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 90.3 bits (225), Expect = 2e-21
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 11/132 (8%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
           A+ E    K +GN+F+KA  + +A   Y +A +    + T  +NRAAA     +   A++
Sbjct: 5   ADKE----KAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAIS 59

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE------VSRKIK 116
                +    +    Y         +      L   +  ++Y  +S        +  K++
Sbjct: 60  TLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLR 119

Query: 117 RVSQLAKDKKRA 128
              +  K  +  
Sbjct: 120 NAEKELKKAEAE 131

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 72.6 bits (179), Expect = 4e-15
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           K     F + GN         + I+    + T     A     L    K L  AE    +
Sbjct: 76  KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYV 134

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           NP+  +    +G        + +A+ A+   ++  P+ A 
Sbjct: 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR 174

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 72.6 bits (179), Expect = 4e-15
 Identities = 13/98 (13%), Positives = 28/98 (28%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
             +   K  N  K           +P            +        A+      I   P
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +  +GY  +   L  +  + +A++    A++ +P    
Sbjct: 171 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 208

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 58.3 bits (142), Expect = 5e-10
 Identities = 12/79 (15%), Positives = 31/79 (39%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +     K  ++ +A A   +AI++DP+    +  +A A + + +   AL   +   + + 
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238

Query: 73  QWEKGYFRKGCILEAMEQY 91
           +   G   +       +  
Sbjct: 239 EVNNGSSAREIDQLYYKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 8/73 (10%), Positives = 20/73 (27%), Gaps = 1/73 (1%)

Query: 38  PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSA 97
            S           F    + ++A+        L+         +        +Y+ A+S 
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60

Query: 98  FQTALQYNPQSAE 110
              A++   +   
Sbjct: 61  LNDAVEQGREMRA 73

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  110 bits (277), Expect = 5e-28
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
           A+ E+    + G +   AG    A + +  A+  DP N   +  RA  FL + K   AL 
Sbjct: 1   ADVEK--HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP 58

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122
           D    I+L   +     ++G +L    + D+A   F+  L+ NP   E      ++ +  
Sbjct: 59  DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD 118

Query: 123 KDKKRAQ 129
           + ++   
Sbjct: 119 EMQRLRS 125

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  101 bits (254), Expect = 9e-25
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 4/123 (3%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADA 64
            L +   E  + G Y  A + Y   +K +PS               F    K  +A+   
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124
              + + P        +       E YD+A+  ++ A ++N    ++   +++  +L K 
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

Query: 125 KKR 127
            ++
Sbjct: 356 SQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 93.1 bits (232), Expect = 1e-21
 Identities = 22/125 (17%), Positives = 51/125 (40%)

Query: 6   EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
           E   L+ +  + F   +Y  A     + ++    +  L   RA  F+   +  KA++D +
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 178

Query: 66  TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125
               L     + +++   +   +  ++ +LS  +  L+ +          K+V +L K  
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238

Query: 126 KRAQE 130
           + A+E
Sbjct: 239 ESAEE 243

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 12/115 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +   F K G   KA +    A K    N   F   +  +  L     +L++    + L+ 
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219

Query: 73  ------------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115
                       +           L    +Y DA S +++ ++  P  AE + + 
Sbjct: 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 15/113 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR---------------AAAFLHLVKL 57
           +G+   K G   +A   + + +K +PS                       A         
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 58  NKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             A+   +  + +     +    +        +   A+S  + A +    + E
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 15/114 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +   F   G    A    T+ I            R    L   KL++A  D +  +  NP
Sbjct: 43  RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102

Query: 73  QWEKGYFRKGCILEA---------------MEQYDDALSAFQTALQYNPQSAEV 111
             ++    +  +++A                  Y  A++     L+     AE+
Sbjct: 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  110 bits (278), Expect = 2e-27
 Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 2/157 (1%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           ++LKDKGN+FF+   Y  A   Y  A++    +P  +SN +A ++ +  L K +  +   
Sbjct: 7   LALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKA 65

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAF-QTALQYNPQSAEVSRKIKRVSQLAKDKK 126
           + L P + K   R+    E + ++ DA+      +L  +   A +   ++R        K
Sbjct: 66  LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSK 125

Query: 127 RAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163
             ++  +I +       L    ++  +          
Sbjct: 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 86.0 bits (213), Expect = 7e-19
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 1/101 (0%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           L+  G   F   + L A     +AI+  P     +   A          +     +  + 
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALK 298

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           L+      Y+ +G +   ++ YD A   F  A + +P++  
Sbjct: 299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF 339

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 85.2 bits (211), Expect = 1e-18
 Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 9/108 (8%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH---------LVKLNKALAD 63
                    ++ KA   Y  AI+ +     ++   A              +    +A   
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437

Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            E    L+P+ E+       +    E  D+A++ F+ +        E 
Sbjct: 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 83.6 bits (207), Expect = 4e-18
 Identities = 19/99 (19%), Positives = 42/99 (42%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                    +  +    + +A+K D +N +++ +R      L   ++A  D +    L+P
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +    Y +  C+     ++DD  + F  A +  P++ EV
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV 374

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 80.2 bits (198), Expect = 6e-17
 Identities = 18/99 (18%), Positives = 33/99 (33%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G   F   NY +A   + +A + DP N   +   A       K +             P
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +  +       IL     +D AL  +  A++   +   +
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 74.8 bits (184), Expect = 4e-15
 Identities = 16/107 (14%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                ++   +     L+++A ++ P  P + +  A         +KAL   +  I L  
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 73  QWEKGYFRKGCIL---------EAMEQYDDALSAFQTALQYNPQSAE 110
           + +  Y     ++           +E + +A +  + A + +P+S +
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ 450

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 2/101 (1%)

Query: 12  DKGNEFFKA-GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
                F KA   + +      +  K          +             A  D +  I L
Sbjct: 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            P+    Y     I+       +  + F  AL+ +  ++ V
Sbjct: 267 FPRVN-SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 14/119 (11%), Positives = 25/119 (21%), Gaps = 12/119 (10%)

Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH------- 53
              + E +        FF         A Y ++ + D       SN              
Sbjct: 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADE 210

Query: 54  -----LVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
                     + L        L  +        G           A    + A++  P+
Sbjct: 211 SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR 269

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  110 bits (276), Expect = 2e-27
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 5/147 (3%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
           A+ E+    + G +   AG    A + +  A+  DP N   +  RA  FL + K   AL 
Sbjct: 24  ADVEK--HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP 81

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV---SRKIKRVS 119
           D    I L   +     ++G +L    + D+A   F+  L+ NP   E      ++ +  
Sbjct: 82  DLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD 141

Query: 120 QLAKDKKRAQEVENIRSNVDMVQHLDE 146
           ++ + + +A            +  LD+
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDK 168

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  102 bits (256), Expect = 1e-24
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 4/124 (3%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADA 64
            L +   E  + G Y  A + Y   +K +PS               F    K  +A+   
Sbjct: 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318

Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124
              + + P        +       E YD+A+  ++TA ++N    ++   +++  +L K 
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378

Query: 125 KKRA 128
            ++ 
Sbjct: 379 SQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 92.4 bits (230), Expect = 3e-21
 Identities = 24/125 (19%), Positives = 53/125 (42%)

Query: 6   EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
           E   L+ +    F +G+Y  A A   + ++    +  L   RA  F+   +  KA++D +
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201

Query: 66  TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125
               L     + +++   +   +  ++ +LS  +  L+ +          K+V +L K  
Sbjct: 202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261

Query: 126 KRAQE 130
           + A+E
Sbjct: 262 ESAEE 266

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 67.8 bits (166), Expect = 8e-13
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +   F K G   KA +    A K    N   F   +  +  L     +L++    + L+ 
Sbjct: 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242

Query: 73  QWEKGY------------FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115
             ++ +                  L    +Y DA S +++ ++  P  AE + + 
Sbjct: 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS 297

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 15/113 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTL---------------FSNRAAAFLHLVKL 57
           +G+   K G   +A   + + +K +PS                     ++A         
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 58  NKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             A+A  +  + +     +    +        +   A+S  + A +    + E
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 18/114 (15%), Positives = 31/114 (27%), Gaps = 15/114 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +   F   G    A    T+ I+           R    L   KL++A  D +  +  NP
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125

Query: 73  ---------------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
                             +    +         Y  A++     L+     AE+
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 1/129 (0%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
           AE    S +   + F K    ++A  + ++ ++ +P N     +RA A+L     ++A+ 
Sbjct: 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 350

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK-IKRVSQL 121
           D ET    N   ++           ++Q           ++ N +  E+ +   K   Q 
Sbjct: 351 DYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410

Query: 122 AKDKKRAQE 130
             D  + +E
Sbjct: 411 HPDNFQNEE 419

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 11/67 (16%)

Query: 44  FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103
             +            +++AD E            +   G  L A  Q  DALS F  A+ 
Sbjct: 6   HHSSGVDLGTENLYFQSMADVEK-----------HLELGKKLLAAGQLADALSQFHAAVD 54

Query: 104 YNPQSAE 110
            +P +  
Sbjct: 55  GDPDNYI 61

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  103 bits (259), Expect = 6e-25
 Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 1/153 (0%)

Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
           +A  + LK++GN FF A N+ +A   Y  AI+ DP+ P  +SN +A ++    L K +  
Sbjct: 22  QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEF 81

Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA-LQYNPQSAEVSRKIKRVSQLA 122
               + + P   K   R+    E++  + DA+       L  +   A +   ++R     
Sbjct: 82  TTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQ 141

Query: 123 KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY 155
             K   + +         V   +   +     +
Sbjct: 142 AMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 85.9 bits (213), Expect = 8e-19
 Identities = 19/99 (19%), Positives = 36/99 (36%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                    N  +    + +A+  +P  P  + +R   +  L     A  D +   SLNP
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +    Y +  C+L    ++ ++ + F       P   EV
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           L   G   F   N L A  L  ++I   P  P  +   A          +     +  + 
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVD 304

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           LNP++   Y+ +G +   ++ Y +A   FQ A   NP++  
Sbjct: 305 LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY 345

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 80.2 bits (198), Expect = 6e-17
 Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 16/115 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV----------------K 56
                   G++  A   Y  A + +     +                            K
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443

Query: 57  LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            N A+        L+P+ E+       +   ME+ D+A+  F+ +        E 
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 76.3 bits (188), Expect = 1e-15
 Identities = 17/99 (17%), Positives = 33/99 (33%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G  +F   +Y  A   + +A   +P N   +   A       K  ++ A    T    P
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
              +       IL     +D A+  +  A +      ++
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 16/114 (14%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                +K G + ++ A + +   + P+ P + +  A         + A+   +    L  
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 73  QWEKGYFRKGCILE----------------AMEQYDDALSAFQTALQYNPQSAE 110
             EK +   G ++                   E+++ A+     A + +P+S +
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 4/94 (4%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFS----NRAAAFLHLVKLNKALADAETTISLNPQWEK 76
           G+++       Q     PS    ++    NR   F      N+A+   +  I L+P    
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 77  GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            Y        +    +  +     AL+  P  ++
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSK 94

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 17/111 (15%), Positives = 29/111 (26%), Gaps = 1/111 (0%)

Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKA 60
           + +  +E  L            Y    +  T       +                 L  A
Sbjct: 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262

Query: 61  LADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
               + +I+L+P     Y      L   E   +    FQ A+  NP+    
Sbjct: 263 QVLLQESINLHPTPN-SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.6 bits (142), Expect = 7e-10
 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 2/96 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH--LVKLNKALADAETTISL 70
           + +    + NY  A AL + A+++  S        A   L       +  L+       L
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
                      G          DA    Q ++  +P
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP 274

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 2/99 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +         +  A  L T+A + DP +       A   L + K+++A+   E +  L  
Sbjct: 434 QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
             ++    +        +    L A          +   
Sbjct: 494 TMDEKL--QATTFAEAAKIQKRLRADPIISAKMELTLAR 530

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 96.3 bits (240), Expect = 2e-24
 Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAI------------------KQDPSNPTLFSNRAAA 50
           +L+ KGNE F   +Y +A   Y  A+                  + D  N  L++N +  
Sbjct: 13  ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQC 72

Query: 51  FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +L++  L++A   +   +      EK  FR+     A  + D+A    +  L+ +P +A 
Sbjct: 73  YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS 132

Query: 111 VSRKIKRVSQLAKDKKRAQE 130
           V  +  ++    + +K+A  
Sbjct: 133 VVAREMKIVTERRAEKKADS 152

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 97.2 bits (242), Expect = 2e-24
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 16/137 (11%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----------------TLFSNRAAAFL 52
            +K++GNEFFK     +A   Y +A+                       +   N A  + 
Sbjct: 40  DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN 99

Query: 53  HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
                 KA+  A   + ++    K  ++ G         ++A      A   NP + ++ 
Sbjct: 100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 159

Query: 113 RKIKRVSQLAKDKKRAQ 129
              +      K+ ++  
Sbjct: 160 NSYELCVNKLKEARKKD 176

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 95.0 bits (236), Expect = 2e-22
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---------------TLFSNRAAAFLHL 54
           +K++G  +FK G Y +A   Y + +                          N A   L L
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209

Query: 55  VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
              + A+      + L+   EKG  R+G    A+  ++ A + FQ  LQ  P +     +
Sbjct: 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269

Query: 115 IKRVSQLAKDKKRAQ 129
           +    Q  + +   +
Sbjct: 270 LAVCQQRIRRQLARE 284

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 88.4 bits (220), Expect = 5e-20
 Identities = 28/103 (27%), Positives = 44/103 (42%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
            L    +  F+     ++A   T AIKQ+P     +SN    +    +L +A+      +
Sbjct: 35  VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            L P +  GY      L A    + A+ A+ +ALQYNP    V
Sbjct: 95  RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 86.4 bits (215), Expect = 3e-19
 Identities = 18/100 (18%), Positives = 43/100 (43%)

Query: 12  DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
           +  +  ++AG++  A     Q  +Q+P N  +    ++      +L+++   +   I  N
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           P   + Y   G + +   Q  +A+  ++ AL+  P   + 
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 86.1 bits (214), Expect = 3e-19
 Identities = 21/98 (21%), Positives = 42/98 (42%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN + + G   +A   Y  A++  P     + N AAA +    +  A+    + +  NP
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                    G +L+A+ + ++A + +  A++  P  A 
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 84.9 bits (211), Expect = 8e-19
 Identities = 20/98 (20%), Positives = 37/98 (37%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                  AG+   A   Y  A++ +P    + S+       L +L +A A     I   P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            +   +   GC+  A  +   A+  F+ A+  +P   +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 82.6 bits (205), Expect = 6e-18
 Identities = 16/98 (16%), Positives = 42/98 (42%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
             N   + G+  +A   Y  A++  P++    +N A        + +A+      + + P
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           ++   +     +L+   +  +AL  ++ A++ +P  A+
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 82.2 bits (204), Expect = 9e-18
 Identities = 27/99 (27%), Positives = 46/99 (46%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN     G   +A A Y +AI+  P+    +SN    F    ++  A+   E  ++L+P
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            +   Y   G +L+    +D A++A+  AL  +P  A V
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 20/99 (20%), Positives = 36/99 (36%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
               +++ G    A   Y +AI+  P  P  + N A A      + +A     T + L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
                      I       ++A+  ++ AL+  P+ A  
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 79.9 bits (198), Expect = 4e-17
 Identities = 22/98 (22%), Positives = 40/98 (40%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN   +A  + +A A Y +A+   P++  +  N A  +     ++ A+      I L P
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            +   Y      L+      +A   + TAL+  P  A+
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 79.9 bits (198), Expect = 6e-17
 Identities = 18/98 (18%), Positives = 36/98 (36%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  F   G    A   + +A+  DP+    + N           ++A+A     +SL+P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                +    C+       D A+  ++ A++  P   +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
             N   + GN  +A  LY +A++  P      SN A+      KL +AL   +  I ++P
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 73  QWEKGYFRKGCILEAME 89
            +   Y   G  L+ M+
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 86.3 bits (214), Expect = 3e-19
 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 16/137 (11%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAI------KQDPSNP----------TLFSNRAAAFL 52
            LK+ GN FFK+ N+  A   YT+ +      +    +           +   N  A  L
Sbjct: 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL 284

Query: 53  HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
            +     A+      + ++P   K  +R+    + +++YD AL+  + A +  P+   + 
Sbjct: 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ 344

Query: 113 RKIKRVSQLAKDKKRAQ 129
            ++ +V Q  K +K  +
Sbjct: 345 AELLKVKQKIKAQKDKE 361

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 80.9 bits (200), Expect = 5e-19
 Identities = 18/122 (14%), Positives = 34/122 (27%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
            L   G   ++AG +  A  ++      D  +   F    A    L    +AL       
Sbjct: 20  QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGA 79

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128
            ++    +  F        +   D A S F +A               R   + +     
Sbjct: 80  LMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR 139

Query: 129 QE 130
           ++
Sbjct: 140 KD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 60.9 bits (148), Expect = 8e-12
 Identities = 7/84 (8%), Positives = 19/84 (22%)

Query: 28  ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87
                                       K + A    +    L+    + +   G   ++
Sbjct: 5   GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64

Query: 88  MEQYDDALSAFQTALQYNPQSAEV 111
           +  Y+ AL ++      +      
Sbjct: 65  LGLYEQALQSYSYGALMDINEPRF 88

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 83.9 bits (208), Expect = 6e-19
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET---TIS 69
             +  FK  NY +A  ++ +   +  ++P +++ RA  +  L K + A  D ET    ++
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                   +   G IL    Q   A+  +Q A+  +    +
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD 109

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 79.2 bits (196), Expect = 2e-17
 Identities = 19/98 (19%), Positives = 33/98 (33%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G    K G    A   Y  A+ +D +   ++    + F +      A+   E  I    
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
              K ++  G      ++Y  A S+F   L+  P    
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G+ F+  GN+  A     + I+   ++P +F     A+ +  +  KA +     + L P
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173

Query: 73  QWEKGYFRKGCILEAM---EQYDDALSAFQTALQYNPQSAE 110
               GY  +     A     +   A   ++  ++       
Sbjct: 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 72.7 bits (179), Expect = 5e-15
 Identities = 8/101 (7%), Positives = 28/101 (27%), Gaps = 3/101 (2%)

Query: 13  KGNEFFKAGNY---LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +   +++   Y    K    Y   +    +    F       +   + + A+   +  + 
Sbjct: 43  RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            +      Y + G        +  A+   +  ++      +
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK 143

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 11/109 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL---VKLNKALADAETTIS 69
            G  ++    Y+KA + + + ++  P+    +  RA A        K   A    E  I 
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 70  L--------NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +          +  +                 A +A++  L  +P + +
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK 256

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 9/74 (12%), Positives = 19/74 (25%), Gaps = 3/74 (4%)

Query: 40  NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ 99
           N  +    A          +A+       +        Y R+      + +YD A    +
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 100 T---ALQYNPQSAE 110
           T    +      + 
Sbjct: 62  TYFSKVNATKAKSA 75

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 12/81 (14%), Positives = 21/81 (25%), Gaps = 8/81 (9%)

Query: 19  KAGNYLKAAALYTQAIKQDPSNPTL--------FSNRAAAFLHLVKLNKALADAETTISL 70
                  A   Y + I+                    A  +       KA A  +  ++L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

Query: 71  NPQWEKGYFRKGCILEAMEQY 91
           +P  +K        LE    +
Sbjct: 251 DPTNKKAIDGLKMKLEHHHHH 271

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 81.4 bits (202), Expect = 3e-18
 Identities = 24/110 (21%), Positives = 51/110 (46%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
            +    M+   +     + G+Y KAA  +T+AI+++  +   + N A     + +L +AL
Sbjct: 18  GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERAL 77

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           A  +  + L+      Y+  G +    E Y +A   F+ AL+   ++ ++
Sbjct: 78  AFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 77.6 bits (192), Expect = 7e-17
 Identities = 23/98 (23%), Positives = 40/98 (40%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN +     Y +A  ++ +A++    N  LF       + L +   AL   +  + LN 
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
              +  F+ G  L      D+ALS F    + +P  A+
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD 194

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 14/98 (14%), Positives = 29/98 (29%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G    K      A     +A++ + ++            +   L++AL+        +P
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                ++  G      E  + AL     A+   P    
Sbjct: 191 GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 20/98 (20%), Positives = 36/98 (36%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
             N         +A A Y +A++ D S  T +      ++      +A    E  +    
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +    ++  G +L  +EQ   AL   Q A++ N    E
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 57.9 bits (141), Expect = 4e-10
 Identities = 14/79 (17%), Positives = 25/79 (31%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G      G   +A + +    +QDP +   F N    + +     KAL   +  I + P
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224

Query: 73  QWEKGYFRKGCILEAMEQY 91
                   K  +      +
Sbjct: 225 DHMLALHAKKLLGHHHHHH 243

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 82.8 bits (204), Expect = 4e-18
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 17/137 (12%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----------------TLFSNRAAAFL 52
            K  GN  FK     +A   Y  AI     +                      N AA  +
Sbjct: 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI 241

Query: 53  HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
            L + ++A+      ++   +  K  FR+G     + Q D A   F+ A +Y P    + 
Sbjct: 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301

Query: 113 RKIKRVSQLAKDKKRAQ 129
           R+++ +++  K   + Q
Sbjct: 302 RELRALAEQEKALYQKQ 318

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 83.3 bits (206), Expect = 6e-18
 Identities = 17/101 (16%), Positives = 38/101 (37%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           L  K +  F    ++   A+ T+ ++ DP N  ++    A+     + NK    +   + 
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            +P+    +   G     + +  +A   F  +   +PQ   
Sbjct: 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 74.5 bits (183), Expect = 6e-15
 Identities = 14/98 (14%), Positives = 37/98 (37%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                 ++G   K   +    + + P     +      +L + K+++A      + +++P
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           Q+   +           ++D A+SA+ TA +    +  
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 71.4 bits (175), Expect = 5e-14
 Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 7/113 (6%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIK-------QDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
            G   F   +   A   +  A+         +      ++N   A+  L   + A+    
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540

Query: 66  TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
             + L+      +     +    +    A++    +L  +P     S  +KR 
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 15/103 (14%), Positives = 29/103 (28%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           SL           + L+ A  Y  +I     +  L   +A       +    LA     +
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            ++P     Y      L    + +         +  +P+ A  
Sbjct: 333 EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 68.3 bits (167), Expect = 6e-13
 Identities = 13/99 (13%), Positives = 30/99 (30%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  +       +A   ++++   DP     +   A +F    + ++A++   T   L  
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
                Y   G     +     A    Q++         +
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 15/100 (15%), Positives = 32/100 (32%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
             + F   G + +A + YT A +        +       + L  +  A    +++ +L  
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
                    G +         A++ FQ AL    ++    
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 12/102 (11%), Positives = 32/102 (31%), Gaps = 3/102 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA---ETTIS 69
           +G  +    N+ +A   Y +A+  D      F    +  L        L       T   
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            +  + +  +       + E        + +++    +S+++
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDL 307

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 12/74 (16%), Positives = 26/74 (35%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G+ + K   Y  A     Q +    ++  + +  A  +LH      A+     +++++P
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 73  QWEKGYFRKGCILE 86
                       LE
Sbjct: 582 NEIMASDLLKRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 17/132 (12%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
              +   G+Y +A  L T+    + S+   +   A   + L     AL     T      
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGALNLLGETNPFRKD 182

Query: 74  WEKG----------------YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117
            +                   + +G +   +  +D A   ++ AL  + +  E   ++  
Sbjct: 183 EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS 242

Query: 118 VSQLAKDKKRAQ 129
              L  D++   
Sbjct: 243 NHLLTADEEWDL 254

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 74.4 bits (184), Expect = 6e-17
 Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G   + AGNY ++  L+ +AI+ DP     +  +  A  +L +  +A+      I++  
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 73  --QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
               +  +  K   L  +E  +      +   +    
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 58.2 bits (142), Expect = 4e-11
 Identities = 13/70 (18%), Positives = 27/70 (38%)

Query: 37  DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALS 96
              NP  +              +++   E  I L+P+  K +  KG  L  +E+Y++A+ 
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61

Query: 97  AFQTALQYNP 106
            +   +    
Sbjct: 62  CYNYVINVIE 71

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 41.3 bits (98), Expect = 4e-05
 Identities = 8/42 (19%), Positives = 22/42 (52%)

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +  Q  + Y+ +G +      Y +++  F+ A+Q +P+ ++ 
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 78.9 bits (195), Expect = 7e-17
 Identities = 19/107 (17%), Positives = 45/107 (42%)

Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
           + ++++++ +   F     Y +   L   A++ +P++  L ++    +      + A A+
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAAN 194

Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
               + L P   + + + G  L    +  +AL A+  AL  NP    
Sbjct: 195 LRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR 241

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 15/99 (15%), Positives = 31/99 (31%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G    K  N  +AA  +    +  P     + +         K   A+        L+P
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +    +             + AL++ +  L   PQ  ++
Sbjct: 87  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 20/98 (20%), Positives = 37/98 (37%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  +  + NY  AAA   +A++  P +  L++   A   +  +  +AL      + +NP
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            + +  +        M QYD A      A+        
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT 275

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 17/91 (18%), Positives = 28/91 (30%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80
           G+ L+    Y                   + L L  L +A    E      P+ E+ +  
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 81  KGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            G      E+   A+ A   A   +P+   V
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAV 91

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 15/114 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G    +      A      A   DP +  + +  A +  +    N ALA     +   P
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 73  Q---------------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           Q                +     +     A  +Y +  +    AL+ NP  A++
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 15/113 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFS---------------NRAAAFLHLVKL 57
                    N   A A     +   P    L S               +    F    + 
Sbjct: 95  LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154

Query: 58  NKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            +        + +NP   + +   G +      YD A +  + A++  P  A+
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ 207

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 12/103 (11%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +A   Y +A+  +P    +  N A ++ ++ + + A       I +  
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271

Query: 73  QWEKGYFRK------------GCILEAMEQYDDALSAFQTALQ 103
                                  +L  M + D     +   ++
Sbjct: 272 GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 74.9 bits (184), Expect = 8e-17
 Identities = 19/125 (15%), Positives = 41/125 (32%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
            L       +++G Y  A  ++      D  +   F    A    + + + A+       
Sbjct: 23  QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128
            ++    +  F     L    +  +A S    A +      E      RVS + +  K  
Sbjct: 83  VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLK 142

Query: 129 QEVEN 133
           +E+++
Sbjct: 143 KEMKH 147

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 61.9 bits (150), Expect = 4e-12
 Identities = 11/91 (12%), Positives = 22/91 (24%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80
           G             +          + A           A    +    L+    + +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 81  KGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            G   +AM QYD A+ ++      +      
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 76.0 bits (188), Expect = 9e-17
 Identities = 20/98 (20%), Positives = 38/98 (38%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           KG    KAG Y +A  L  Q    D  +  +  +   A++    +++     E +++  P
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
              K     G     +++YD A+       + NP +  
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN 111

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 74.0 bits (183), Expect = 4e-16
 Identities = 18/98 (18%), Positives = 41/98 (41%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  + +   Y  A  L  +  + +P N  +      A  +L + ++A+   +  + L P
Sbjct: 82  LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
              K +       E M ++++AL  F+ A + +  ++ 
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 74.0 bits (183), Expect = 4e-16
 Identities = 20/98 (20%), Positives = 41/98 (41%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  + K G   +   L  +++   P N  + +     ++ + K + A+         NP
Sbjct: 48  LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                 FR G  L+ + ++D+A+ +F+ AL   P   +
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK 145

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 60.5 bits (148), Expect = 3e-11
 Identities = 7/77 (9%), Positives = 21/77 (27%)

Query: 34  IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93
           +  D      + ++  +     + ++A+   E     +          G         D 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 94  ALSAFQTALQYNPQSAE 110
                + +L   P + +
Sbjct: 61  GTELLERSLADAPDNVK 77

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 6/44 (13%), Positives = 14/44 (31%)

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +  +   +  Y  KG       +Y  A+   +     +    +V
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV 44

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 16/99 (16%), Positives = 33/99 (33%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G  +   G    A   ++QA+   P  P +F+            + A    ++ + L+P
Sbjct: 49  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            +   +  +G  L    +   A        Q +P     
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR 147

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 69.3 bits (170), Expect = 9e-14
 Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 4/101 (3%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQ----DPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
                         A   Q +      D     L   R   +  L     A  D    ++
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           + P   + +   G  L     +D A  AF + L+ +P    
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 112

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 22  NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLNPQWEKGY 78
           +  +A  +  Q  ++       ++       ++     + +  ADA    SL     +  
Sbjct: 159 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 218

Query: 79  FRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           F  G    ++   D A + F+ A+  N  +  
Sbjct: 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 1/98 (1%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G    +AGN+  A   +   ++ DP+      NR  A  +  +   A  D       +P
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                        + +++   A    +   + + +   
Sbjct: 143 NDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQW 179

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 12/84 (14%), Positives = 22/84 (26%)

Query: 16  EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE 75
              +     +  A  T                   +L L  L+ A A  +  ++ N    
Sbjct: 190 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249

Query: 76  KGYFRKGCILEAMEQYDDALSAFQ 99
             +      L  + Q  D L+   
Sbjct: 250 VEHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 48  AAAFLHLVKLNKALADAE----TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103
           A      ++    LA  E    +    + +  +  + +G + +++     A + F  AL 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 104 YNPQSAEV 111
             P   EV
Sbjct: 72  IRPDMPEV 79

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 10/53 (18%), Positives = 19/53 (35%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
            G  +   G+   A AL+  A+  +  N             L +    LA+++
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 72.5 bits (178), Expect = 7e-16
 Identities = 14/104 (13%), Positives = 30/104 (28%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +     +F+  G   +A   +      D  N       AA +    +  +A        +
Sbjct: 39  IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113
           L        F  G     ++    A   F+  +Q++       +
Sbjct: 99  LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIK 142

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 53.3 bits (128), Expect = 6e-09
 Identities = 9/105 (8%), Positives = 26/105 (24%)

Query: 7   EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET 66
            +++ +  +      + + + A                 + A  F +  ++ +A      
Sbjct: 2   SLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF 61

Query: 67  TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
               +            I +  EQ+  A   +  A          
Sbjct: 62  LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 76.7 bits (189), Expect = 9e-16
 Identities = 13/98 (13%), Positives = 22/98 (22%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P      ++       L  + + L        L P
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           Q            +A+E     L     A    P+   
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 379

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 76.7 bits (189), Expect = 9e-16
 Identities = 15/98 (15%), Positives = 23/98 (23%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +   +  QA    P      ++       L  + + L        L P
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 273

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           Q            +A+E     L     A    PQ   
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVV 311

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 76.7 bits (189), Expect = 1e-15
 Identities = 13/98 (13%), Positives = 22/98 (22%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P      ++       L  + + L        L P
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +            +A+E     L     A    PQ   
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVV 447

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 76.3 bits (188), Expect = 1e-15
 Identities = 15/98 (15%), Positives = 22/98 (22%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                           +  QA    P      ++       L  + + L        L P
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           Q        G   +A+E     L     A    PQ   
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 243

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 12/99 (12%), Positives = 22/99 (22%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P      ++       L  + + L        L P
Sbjct: 78  HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 137

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +            +A+E     L     A    P+    
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVA 176

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 74.0 bits (182), Expect = 6e-15
 Identities = 14/101 (13%), Positives = 23/101 (22%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +              +   +  QA    P      ++       L  +   L        
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHG 168

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           L P+        G   +A+E     L     A    PQ   
Sbjct: 169 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 209

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 16/101 (15%), Positives = 25/101 (24%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +   G          +   +  QA    P      ++       L  + + L        
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 236

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           L PQ        G   +A+E     L     A    PQ   
Sbjct: 237 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 277

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 71.7 bits (176), Expect = 4e-14
 Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 7/128 (5%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +   G          +   +  QA    P      ++       L  + + L        
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 372

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-------VSRKIKRVSQLA 122
           L P+        G   +A+E     L     A    P+            + ++ V +L 
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLL 432

Query: 123 KDKKRAQE 130
               +A  
Sbjct: 433 PVLCQAHG 440

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 71.7 bits (176), Expect = 4e-14
 Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 7/123 (5%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +   +  QA    P      ++ +     L  + + L        L P
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-------VSRKIKRVSQLAKDK 125
           Q        G   +A+E     L     A    PQ            + ++ V +L    
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 367

Query: 126 KRA 128
            +A
Sbjct: 368 CQA 370

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 68.6 bits (168), Expect = 4e-13
 Identities = 16/94 (17%), Positives = 23/94 (24%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +   +  QA    P      ++       L  + + L        L P
Sbjct: 384 NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 443

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
           Q        G    A+E     LS    AL    
Sbjct: 444 QQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.9 bits (166), Expect = 8e-13
 Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 7/127 (5%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G        +    AL    +   P      ++       L  + + L        L P
Sbjct: 44  RGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 103

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-------VSRKIKRVSQLAKDK 125
           Q            +A+E     L     A    P+            + ++ V  L    
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163

Query: 126 KRAQEVE 132
            +A  + 
Sbjct: 164 CQAHGLT 170

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 13/100 (13%), Positives = 21/100 (21%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
                          A  L    ++ D       + R              A     ++L
Sbjct: 8   HQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNL 67

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            P+            +A+E     L     A    PQ   
Sbjct: 68  TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVV 107

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 75.5 bits (186), Expect = 1e-15
 Identities = 16/99 (16%), Positives = 32/99 (32%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G    + G+   A  L+  A++QDP +   +           +   A++     + L P
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
             +                  A    +  L+Y P  A +
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 168

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 23/115 (20%), Positives = 46/115 (40%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  F  +G Y KA   +T A+   P++  L++   A   +  +  +A+A     + L P
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127
            + +  +  G     +  + +A+  F  AL    +S     +   +S+      R
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 2/100 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSN--PTLFSNRAAAFLHLVKLNKALADAETTISL 70
                     +L+   L+  A++ DP++  P +       F    + +KA+      +S+
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            P     + + G  L    Q ++A++A++ AL+  P    
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 286

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 67.8 bits (166), Expect = 6e-13
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFS----NRAAAFLHLVK 56
           + AE EEM+ +D     + +      +A Y +  + +  NP              L    
Sbjct: 20  LQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGD 79

Query: 57  LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           L  A+   E  +  +P+  + +   G      EQ   A+SA +  L+  P +   
Sbjct: 80  LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 134

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 15/113 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G    +    L A +   + ++  P N T     A +F +     +A       +   P
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

Query: 73  QWEKGYFRKGCI---------------LEAMEQYDDALSAFQTALQYNPQSAE 110
            +                         L +   + +    F  A++ +P S +
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID 216

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 73.2 bits (180), Expect = 2e-15
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 8   MSLKD------KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           MSL +      +G       ++  A   ++        +  +  N    +  L  + +A 
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAE 57

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
                +I+ +      YF++G +    E+YD A+   + AL    
Sbjct: 58  KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 63.2 bits (154), Expect = 6e-12
 Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 16/113 (14%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  +    N  +A   +T++I +D      +  R   +    K + A+ D +  +    
Sbjct: 43  IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102

Query: 73  ----------------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109
                              +  +    +    E++  A      A     +  
Sbjct: 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 32/131 (24%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTL----------------FSNRAAAFLHLVK 56
           +G  +++   Y  A     +A+ Q   N  +                  N A  +    +
Sbjct: 77  RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136

Query: 57  LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116
             KA        S+  +                  D A+        Y P    V R  +
Sbjct: 137 WKKAEEQLALATSMKSEPRHSK------------IDKAMECVWKQKLYEPVVIPVGRLFR 184

Query: 117 ----RVSQLAK 123
               +V+QLAK
Sbjct: 185 PNERQVAQLAK 195

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 75.5 bits (185), Expect = 2e-15
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 15/139 (10%)

Query: 6   EEMSLKDKGNEFFKAGNYLKAAALYTQAI---------------KQDPSNPTLFSNRAAA 50
           +   +K+KG  +FK G Y++A   Y + +                 +      F N A  
Sbjct: 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326

Query: 51  FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +L L +  KA+   +  + L+   EKG +R+G     M +++ A   F+  L+ NPQ+  
Sbjct: 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386

Query: 111 VSRKIKRVSQLAKDKKRAQ 129
              +I    + AK+     
Sbjct: 387 ARLQISMCQKKAKEHNERD 405

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 1/102 (0%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +       +   ++     L +  +++DP + +         + L K N+    +   + 
Sbjct: 25  VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84

Query: 70  LNPQWEKGYFRKGCILEAM-EQYDDALSAFQTALQYNPQSAE 110
           L P     +F  GC    +  + + A      A         
Sbjct: 85  LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP 126

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 9/115 (7%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIK---------QDPSNPTLFSNRAAAFLHLVKLNKALAD 63
            G   F+ G +  A   +  A++                L +N       L K  +AL  
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258

Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
               + L PQ    Y   G I   M  +++A+  F TAL            +   
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 14/102 (13%), Positives = 26/102 (25%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G+ F     + +A A Y  A +               +        A       +S+ P
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
           +        G +     ++  A   F  AL+           
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 1/100 (1%)

Query: 13  KGNEFFKAGNYLKAA-ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
            G  +   G+  + A    ++A   + +    +     +F    + ++A+A   T   L 
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155

Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
                     G           A   F  AL   P+   V
Sbjct: 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 8/91 (8%), Positives = 25/91 (27%), Gaps = 1/91 (1%)

Query: 21  GNYLKAAA-LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79
           G+Y K +  +  +++     N  +  + A    +              +  +P       
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60

Query: 80  RKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                L  + + ++        +   P +  
Sbjct: 61  VHIGTLVELNKANELFYLSHKLVDLYPSNPV 91

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 15/86 (17%), Positives = 26/86 (30%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G+   K   Y +A   + QA+   P N + +S        +     A+    T + L  
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAF 98
                    G  +E      +A    
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGA 327

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 7/128 (5%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G +  K G+          AI QDP +   +               A+   +  + L P
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-------VSRKIKRVSQLAKDK 125
              K                DA  A +  ++ NP+               +R+S+   D 
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190

Query: 126 KRAQEVEN 133
              + V+ 
Sbjct: 191 SVLEGVKE 198

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 19/98 (19%), Positives = 41/98 (41%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  F  +G + +A   +  A+   P + +L++   A   +  +  +A+      + + P
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            + +  +  G     +  Y +A+S F TAL    +S  
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 67.8 bits (166), Expect = 5e-13
 Identities = 20/115 (17%), Positives = 33/115 (28%), Gaps = 5/115 (4%)

Query: 1   MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFS----NRAAAFLHLVK 56
           M AE EEM+ +       +        +   +       NP              L    
Sbjct: 22  MQAEWEEMA-RRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGD 80

Query: 57  LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           L   +   E  I  +P   + +   G      E    A+ A Q  L+  P + + 
Sbjct: 81  LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA 135

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 2/103 (1%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDP--SNPTLFSNRAAAFLHLVKLNKALADAETT 67
            +        +        LY +A  Q+    +P L +     F    + N+A+      
Sbjct: 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +++ P+    + R G  L   ++ ++A+ A+  AL+  P    
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 12/110 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
               +    +   A       IKQ+P    L  N+  +     +++K+  D+     +  
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

Query: 73  QWEK------------GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            + +                 G +     +++ A+ AF  AL   P+   
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 19/113 (16%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +A   YT+A++  P       N   + ++L    +A+++  T +SL  
Sbjct: 253 LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312

Query: 73  QWEKGYFRKGCI------------LEAMEQYDDA-------LSAFQTALQYNP 106
           +                       L  M+Q +         L     A   +P
Sbjct: 313 KSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLDP 365

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 72.5 bits (178), Expect = 3e-15
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL-NKALADAETTI 68
           L+         G    A  +Y + ++ +  N          +    +   K L      +
Sbjct: 91  LEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127
           S   + +   +R G       +Y+ A ++ Q  +   P S E  + + ++ ++ K+  R
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP-STEAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 70.2 bits (172), Expect = 2e-14
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 16/115 (13%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSN----------------PTLFSNRAAAFLHLVK 56
           K +   +AG   +A + + Q I  +                     L +  A A+     
Sbjct: 10  KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 57  LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            +KA    +  +   P           +     Q  DAL  ++  LQ    +   
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 69.4 bits (170), Expect = 3e-14
 Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 1/130 (0%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
            +E       +    + K  NY KA   Y + +++ P+N       A   +   +   AL
Sbjct: 49  NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108

Query: 62  ADAETTISLNPQWEKGYFRKGCIL-EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
              E  + L           G       EQ    L      L    +      +      
Sbjct: 109 RMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKL 168

Query: 121 LAKDKKRAQE 130
                ++A+ 
Sbjct: 169 FTTRYEKARN 178

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 16/82 (19%)

Query: 46  NRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK----------------GCILEAME 89
            + +A +   +  +A++    TI+LN    + Y+                      +   
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 90  QYDDALSAFQTALQYNPQSAEV 111
            YD A   ++  LQ  P + + 
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDC 90

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 70.1 bits (173), Expect = 3e-15
 Identities = 26/98 (26%), Positives = 51/98 (52%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN ++K G+Y +A   Y +A++ DP+N   + N   A+      ++A+   +  + L+P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
              + ++  G        YD+A+  +Q AL+ +P +AE
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 53.2 bits (129), Expect = 4e-09
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 37  DPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95
           DP N    + N   A+      ++A+   +  + L+P   + ++  G        YD+A+
Sbjct: 4   DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63

Query: 96  SAFQTALQYNPQSAE 110
             +Q AL+ +P +AE
Sbjct: 64  EYYQKALELDPNNAE 78

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 47.0 bits (113), Expect = 5e-07
 Identities = 17/73 (23%), Positives = 34/73 (46%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN ++K G+Y +A   Y +A++ DP+N   + N   A+      ++A+   +  + L+P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 73  QWEKGYFRKGCIL 85
              +     G   
Sbjct: 109 NNAEAKQNLGNAK 121

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 70.1 bits (173), Expect = 4e-15
 Identities = 26/98 (26%), Positives = 52/98 (53%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN ++K G+Y +A   Y +A++ DP +   + N   A+      ++A+   +  + L+P
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +  + ++  G        YD+A+  +Q AL+ +P+SAE
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 69.3 bits (171), Expect = 8e-15
 Identities = 24/96 (25%), Positives = 50/96 (52%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN ++K G+Y +A   Y +A++ DP +   + N   A+      ++A+   +  + L+P
Sbjct: 41  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108
           +  + ++  G        YD+A+  +Q AL+ +P+S
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.4 bits (127), Expect = 8e-09
 Identities = 16/67 (23%), Positives = 34/67 (50%)

Query: 44  FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103
           + N   A+      ++A+   +  + L+P+  + ++  G        YD+A+  +Q AL+
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63

Query: 104 YNPQSAE 110
            +P+SAE
Sbjct: 64  LDPRSAE 70

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 74.5 bits (182), Expect = 6e-15
 Identities = 30/102 (29%), Positives = 47/102 (46%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           SL +  N   + GN  +A  LY +A++  P      SN A+      KL +AL   +  I
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            ++P +   Y   G  L+ M+    AL  +  A+Q NP  A+
Sbjct: 71  RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 72.2 bits (176), Expect = 3e-14
 Identities = 19/98 (19%), Positives = 40/98 (40%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
            +   + G   +A   Y +AI+  P+    +SN       +  +  AL      I +NP 
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +   +     I +      +A+++++TAL+  P   + 
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.1 bits (137), Expect = 3e-09
 Identities = 21/101 (20%), Positives = 39/101 (38%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            GN   +  +   A   YT+AI+ +P+     SN A+       + +A+A   T + L P
Sbjct: 83  MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113
            +   Y      L+ +  + D     +  +       E +R
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNR 183

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.4 bits (117), Expect = 8e-07
 Identities = 11/75 (14%), Positives = 32/75 (42%)

Query: 37  DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALS 96
            P++    +N A        + +A+      + + P++   +     +L+   +  +AL 
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 97  AFQTALQYNPQSAEV 111
            ++ A++ +P  A+ 
Sbjct: 65  HYKEAIRISPTFADA 79

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 66.2 bits (162), Expect = 6e-14
 Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 1/108 (0%)

Query: 26  AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85
                   + Q   N  L       +    + + AL      +  +P +   +   G  L
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 86  EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133
           +       A  A+++ L       +     K +    +   R   +E+
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQQVV-KELQVFLRRLAREDALEH 110

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 11/54 (20%), Positives = 19/54 (35%)

Query: 57  LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           +       E  ++         F  G      EQ+D AL   + AL ++P  + 
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV 54

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 71.2 bits (174), Expect = 9e-14
 Identities = 13/102 (12%), Positives = 23/102 (22%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           ++              +   +  QA    P      ++       L  + + L       
Sbjct: 228 AIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAH 287

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            L P         G   +A+E     L     A    P    
Sbjct: 288 GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVV 329

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 69.3 bits (169), Expect = 4e-13
 Identities = 12/101 (11%), Positives = 22/101 (21%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +              +   +  QA    P+     ++       L  + + L        
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           L P             +A+E     L     A    P    
Sbjct: 255 LPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVV 295

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.0 bits (163), Expect = 2e-12
 Identities = 12/103 (11%), Positives = 22/103 (21%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           ++              +   +  QA    P      ++       L  + + L       
Sbjct: 262 AIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAH 321

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
            L P             +A+E     L     A    P     
Sbjct: 322 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 364

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.0 bits (163), Expect = 2e-12
 Identities = 12/102 (11%), Positives = 22/102 (21%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           ++   G          +   +  QA    P      ++       L  + + L       
Sbjct: 533 AIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH 592

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            L               +A+E     L     A    P    
Sbjct: 593 GLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVV 634

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 65.1 bits (158), Expect = 9e-12
 Identities = 14/103 (13%), Positives = 25/103 (24%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           +++   G          +   +  QA    P      ++       L  + + L      
Sbjct: 295 VAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQA 354

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             L P         G   +A+E     L     A    P    
Sbjct: 355 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 397

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 64.7 bits (157), Expect = 1e-11
 Identities = 12/98 (12%), Positives = 22/98 (22%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P+     ++       L  + + L        L P
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 664

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                    G   +A+E     L     A     +   
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVV 702

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 64.7 bits (157), Expect = 1e-11
 Identities = 11/103 (10%), Positives = 23/103 (22%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           +++              +   +  QA    P      ++       L  + + L      
Sbjct: 634 VAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 693

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             L  +            +A+E     L     A    P    
Sbjct: 694 HGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVV 736

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 63.9 bits (155), Expect = 2e-11
 Identities = 12/98 (12%), Positives = 20/98 (20%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P      ++       L  + + L        L P
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 562

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                    G   +A+E     L     A         
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV 600

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.4 bits (151), Expect = 7e-11
 Identities = 13/98 (13%), Positives = 21/98 (21%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +   +  QA           ++       L  + + L        L P
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                    G   +A+E     L     A    P    
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVV 770

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 61.6 bits (149), Expect = 1e-10
 Identities = 12/98 (12%), Positives = 20/98 (20%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +   +  QA           ++       L  + + L        L P
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                        +A+E     L     A    P    
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 13/98 (13%), Positives = 21/98 (21%), Gaps = 1/98 (1%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P      ++       L  + + L        L P
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 393

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                    G   +A+E     L     A    P    
Sbjct: 394 DQVVAIASNG-GKQALETVQRLLPVLCQAHGLTPDQVV 430

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 10/98 (10%), Positives = 19/98 (19%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  Q     P+     ++       L  + + L        L P
Sbjct: 435 HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                        +A+      L     A    P    
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVV 532

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.7 bits (144), Expect = 4e-10
 Identities = 12/98 (12%), Positives = 20/98 (20%), Gaps = 1/98 (1%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G          +   +  QA    P      ++       L  + + L        L P
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTP 426

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                        +A+E     L          P    
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVV 464

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 13/103 (12%), Positives = 25/103 (24%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           + +  +G        +    AL    +   P+     ++       L  + + L      
Sbjct: 159 VKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQA 218

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             L P             +A+E     L     A    P    
Sbjct: 219 HGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVV 261

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 13/95 (13%), Positives = 21/95 (22%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
                       +   +  QA    P      ++       L  + + L        L P
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
                    G   +A+E     L     A    P 
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 13/90 (14%), Positives = 21/90 (23%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80
               +   +  QA    P      ++       L  + + L     T  L P        
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468

Query: 81  KGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                +A+E     L     A    P    
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVV 498

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 10/102 (9%), Positives = 19/102 (18%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +              +   +  QA    P      ++       L  + + L        
Sbjct: 704 IASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 763

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           L P             +A+E     L                
Sbjct: 764 LTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVA 805

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 12/86 (13%), Positives = 19/86 (22%)

Query: 25  KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84
            A  L    ++ D       + R              A     ++L P            
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201

Query: 85  LEAMEQYDDALSAFQTALQYNPQSAE 110
            +A+E     L     A    P    
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVV 227

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 13/121 (10%), Positives = 27/121 (22%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           +++   G          +   +  QA    P+     ++       L  + + L      
Sbjct: 736 VAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQD 795

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127
             L               +A+E     L     A                  Q  +  +R
Sbjct: 796 HGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQR 855

Query: 128 A 128
            
Sbjct: 856 L 856

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 8/101 (7%), Positives = 18/101 (17%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           +              +   +  Q      +     ++       L  + + L        
Sbjct: 772 IASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHG 831

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
           L               +A+E     L          P    
Sbjct: 832 LTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVV 872

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 9/103 (8%), Positives = 20/103 (19%), Gaps = 1/103 (0%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           +++              +   +  Q            ++       L  + + L      
Sbjct: 872 VAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGK-QALETVQRLLPVLCQD 930

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             L P             +A+E     L          P    
Sbjct: 931 HGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVV 973

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 10/102 (9%), Positives = 20/102 (19%), Gaps = 1/102 (0%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           ++              +   +  Q     P      ++       L  + + L       
Sbjct: 839 AIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDH 898

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            L           G   +A+E     L          P    
Sbjct: 899 GLTLDQVVAIASNGGK-QALETVQRLLPVLCQDHGLTPDQVV 939

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 67.9 bits (167), Expect = 1e-13
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G + +  G Y  A  L+ +A+K++P +P      A   L L  +N AL + +T ++  P
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 73  QWEKGYFRKGCILEAME-----------QYDDALSAFQTALQYNPQSAE 110
           ++  GY        A+              + ALS  + A + NP+ A 
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP 119

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G  +   G   KA A   QA+  +   P + S  A  +L + +L++ALA     +   P
Sbjct: 124 RGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
           +      R    L    + ++A  A      ++ 
Sbjct: 183 KDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 11  KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
           +   +     G   +A ++   A + +P    L   R   +  L + +KA A  +  ++L
Sbjct: 88  RQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
               E        +  +M + D+AL+ +  AL+  P+  +
Sbjct: 148 EDTPE-IRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-----------KLNKAL 61
                 K G    A       + + P     +   + A++ L             L +AL
Sbjct: 45  LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
           +  +    +NP++   + ++G +   + + D A ++ + AL    
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 11/73 (15%), Positives = 22/73 (30%)

Query: 38  PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSA 97
            +              L + + AL   E  +  NPQ  +  +        +   + AL  
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 98  FQTALQYNPQSAE 110
            +T +   P+   
Sbjct: 62  GKTLVARTPRYLG 74

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 69.9 bits (171), Expect = 2e-13
 Identities = 13/92 (14%), Positives = 32/92 (34%)

Query: 20  AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79
             +  +       A++  P +   +   A A L +          +  ++L+P   +   
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 80  RKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           R G +    +++ +A    Q A    P+   +
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 67.9 bits (166), Expect = 8e-13
 Identities = 14/98 (14%), Positives = 29/98 (29%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
            +     G+         + +   P +P   +          +  +A    +      P+
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89

Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
                   G  LE   Q + A +A+  A Q  P+   +
Sbjct: 90  HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 15/99 (15%), Positives = 33/99 (33%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +G    K  N  +AA  +    +++P     + +         K   A+        L+P
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
           +    +             + AL++ +  L   PQ  ++
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 37  DPSNPTLFS----NRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD 92
           + +NP ++         + L L  L +A    E      P+ E+ +   G      E+  
Sbjct: 9   EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68

Query: 93  DALSAFQTALQYNPQSAEV 111
            A+ A   A   +P+   V
Sbjct: 69  LAIIALNHARMLDPKDIAV 87

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 13/97 (13%), Positives = 30/97 (30%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           G    +     +A   + ++++ + + P++    A       +   A    +       Q
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             +       + +  E  D A S      +  P S E
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 2/122 (1%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
           G   ++   Y +A     +A +    P    +F N     L + K  +A    E ++ LN
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171

Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131
                       +L    +Y  A   +    Q   Q+A       R++++ +D+  A   
Sbjct: 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY 231

Query: 132 EN 133
             
Sbjct: 232 GL 233

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           G  + + GN  +A     +A++ DPS+    +  A  F   ++   A  +    ++ + +
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103

Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQ--YNPQSAE 110
             +     G  L   ++Y++A      A Q    P+ + 
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSR 142

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 9/87 (10%), Positives = 25/87 (28%)

Query: 25  KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84
                  +  K        +      +L      +A       + ++P     +     +
Sbjct: 21  MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVV 80

Query: 85  LEAMEQYDDALSAFQTALQYNPQSAEV 111
            +   +   A   ++ AL  + ++A V
Sbjct: 81  FQTEMEPKLADEEYRKALASDSRNARV 107

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 59.9 bits (145), Expect = 4e-11
 Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 4/123 (3%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL---VKLNKALADAETTISL 70
           G  +    +Y  +   Y QA++    N  L++  A    +        +  A  +  ++L
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 71  NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130
           +                   Y  A+  +Q  +  N      ++ ++ ++  AK  +R  +
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM-AKLLQRRSD 169

Query: 131 VEN 133
           +E+
Sbjct: 170 LEH 172

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 3/113 (2%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           A  AE    +D  ++F    N           I+ +P N   ++     +L     + +L
Sbjct: 5   AVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSL 64

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQY---DDALSAFQTALQYNPQSAEV 111
                 + L  +  + Y     +L             +    AL  +      
Sbjct: 65  LAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 59.5 bits (143), Expect = 5e-11
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 23/145 (15%)

Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT------------LFSNRAAAFL 52
                          AG Y +AAA   +A++   + P               +  A A  
Sbjct: 9   VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 68

Query: 53  HLVKLNKALADAETTISLNP-----------QWEKGYFRKGCILEAMEQYDDALSAFQTA 101
            L   ++AL  A+  +                W    + +   L+ + +  +A+  F+  
Sbjct: 69  GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128

Query: 102 LQYNPQSAEVSRKIKRVSQLAKDKK 126
           ++   +    +   +R+ ++A D+ 
Sbjct: 129 VEMIEERKGETPGKERMMEVAIDRI 153

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 16/75 (21%), Positives = 33/75 (44%)

Query: 36  QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95
           +DP +P      A   L     ++ALA  E  +  +P +   Y+  G + E +++ DDA+
Sbjct: 2   EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61

Query: 96  SAFQTALQYNPQSAE 110
             +   ++   +   
Sbjct: 62  DTYAQGIEVAREEGT 76

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 10/87 (11%), Positives = 22/87 (25%), Gaps = 1/87 (1%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNK-ALADAETTISLNPQWEKGYF 79
               K      + +            +  A       +  A       + L P+  + + 
Sbjct: 82  EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141

Query: 80  RKGCILEAMEQYDDALSAFQTALQYNP 106
           + G +         A + F  AL +  
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGALTHCK 168

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 58.9 bits (142), Expect = 6e-10
 Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 11/109 (10%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFL--------HLVKLNKALADA 64
             +    + + + +      A++ D  +   +     A+L        +     +AL+  
Sbjct: 185 TDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244

Query: 65  ETTISLNPQWEKG---YFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                ++ +       +  +  + +  E Y +AL  F  A   +P   E
Sbjct: 245 AQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 3/129 (2%)

Query: 21  GNYLKAAALYTQAIKQD---PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG 77
               +A + Y QA K D    SNP L  NRA    +     +AL       +L+P W + 
Sbjct: 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294

Query: 78  YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN 137
             R+  +LE + +    L +         QS   S +   +      + ++   + +   
Sbjct: 295 QQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLE 354

Query: 138 VDMVQHLDE 146
           +  +  L  
Sbjct: 355 LKPLSTLQP 363

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 14/113 (12%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFS--------NRAAAFLHLVKLNKALADA 64
            G  ++K G+   A   ++ A+    +  +L +           +   H   +  ++  A
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202

Query: 65  ETTISLNPQWEKGYFRKGCIL--------EAMEQYDDALSAFQTALQYNPQSA 109
           +  + ++    + ++  G           +  +    ALSA+  A + + +++
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 43.5 bits (102), Expect = 5e-05
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 56  KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD-DALSAFQTALQYNPQSAEV 111
           ++ K L   E  +       +    KG  L     Y  +A      A++  P+  E 
Sbjct: 83  EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA 139

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 3/101 (2%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
             E+ +  +Y +A A    A+K DP N   +  RA  + +L   +KA       +S+ P 
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74

Query: 74  WEKGYFRKGCIL-EAMEQYDDALSAFQTALQ--YNPQSAEV 111
             +     G  L   + +  ++++ F  AL     P     
Sbjct: 75  SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIA 115

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 4/97 (4%)

Query: 19  KAGNYLKAAALYTQAIKQDPSNPTL---FSNRAAAFLHLVKLNKALADAETTISLNPQWE 75
           +     ++ A + +A+  DP+ PT      N+        +   A A  + +++  PQ+ 
Sbjct: 89  RLNRPAESMAYFDKAL-ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147

Query: 76  KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
             +           Q  DA   F+             
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 46  NRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN 105
             A  ++      +A A  E  +  +P+ E  +  +  I + ++  D A  +F+ AL   
Sbjct: 13  QLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK 72

Query: 106 PQSAEV 111
           P SAE+
Sbjct: 73  PDSAEI 78

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           KG    K G +  A A   +++   P  P  F   A   +   +L  A    +   S   
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
             +      G   +  +   +A +A++   Q       
Sbjct: 179 VLQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPY 214

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 58.4 bits (141), Expect = 9e-10
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 18  FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNK---ALADAETTISLNPQW 74
                  +A   + +A+++ P NP   S  A A   L        A+      I LNP  
Sbjct: 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208

Query: 75  EKGYFRKGCILEAM----EQYDDALSAFQTALQYNPQSAEV 111
           +         L  M    E+  +     + AL+  P   +V
Sbjct: 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 55.3 bits (133), Expect = 8e-09
 Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 19/120 (15%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK------------- 56
           L+     + +     KA  L  +A++  P+N  L       +   V              
Sbjct: 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

Query: 57  ------LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
                 +  A+A  +     N    +       +    +QY++A   FQ           
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 14/110 (12%), Positives = 35/110 (31%), Gaps = 19/110 (17%)

Query: 21  GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80
               +   L  +A+++ P    +  + A  +    + +KA+   +  +   P     + +
Sbjct: 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286

Query: 81  KGCIL-------------------EAMEQYDDALSAFQTALQYNPQSAEV 111
            GC                     + +E    A++  + A + N     V
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 23  YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP---QWEKGYF 79
              A A   +A + + +   + S  A+      +  +A    +   S        +  + 
Sbjct: 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375

Query: 80  RKGCILE-AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123
           R G      M+  D A+  F   ++ N +S E  +   ++ ++AK
Sbjct: 376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 19/136 (13%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQ---------DPSNPTLFSNRAAAFLHLVKLNKALADA 64
                  G    A     +A +          +  +   + N A  + H+ +L+      
Sbjct: 58  AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117

Query: 65  ETTISLNPQWEKG--------YFRKGCIL--EAMEQYDDALSAFQTALQYNPQSAEVSRK 114
           +    +  ++              +G         Q + A   F+ AL+  P++ E +  
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177

Query: 115 IKRVSQLAKDKKRAQE 130
           +   S    +   +Q 
Sbjct: 178 LAIASYRLDNWPPSQN 193

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 10/90 (11%)

Query: 18  FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG 77
           ++     KA   + + +K +  +               KL K    A+  +S N    + 
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKS-------REKEKMKDKLQKI---AKMRLSKNGADSEA 432

Query: 78  YFRKGCILEAMEQYDDALSAFQTALQYNPQ 107
                 + E  E+   A    +  L+    
Sbjct: 433 LHVLAFLQELNEKMQQADEDSERGLESGSL 462

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAET 66
           M       E    G+   A     + ++ +P      +     A+  L    KAL + ++
Sbjct: 1   MDQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60

Query: 67  TISLNPQWEKGYFRKGCILEAMEQYD-DALSAFQTALQYN 105
            I LNP       RK  +++ +  Y+ D  +  +    ++
Sbjct: 61  AIELNPDSPALQARKM-VMDILNFYNKDMYNQLEHHHHHH 99

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 46  NRAAAFLHLVKLNKALADAETTISLNPQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQY 104
                 ++   +  AL   E  +   P   ++ Y+  G     +  +  AL+ +Q+A++ 
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 105 NPQSAEV 111
           NP S  +
Sbjct: 65  NPDSPAL 71

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 49.7 bits (120), Expect = 2e-08
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 37  DPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95
           DP N    + N   A+      ++A+   +  + L+P   + ++  G        YD+A+
Sbjct: 4   DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63

Query: 96  SAFQTALQYNPQSAE 110
             +Q AL+ +P +AE
Sbjct: 64  EYYQKALELDPNNAE 78

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 17/73 (23%), Positives = 34/73 (46%)

Query: 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           GN ++K G+Y +A   Y +A++ DP+N   + N   A+      ++A+   +  + L+P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 73 QWEKGYFRKGCIL 85
             +     G   
Sbjct: 75 NNAEAKQNLGNAK 87

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 1/95 (1%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLN 71
                 +     +A  L   AI+ + +N T++  R      L K L++ +      I   
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162

Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
           P+  + +  +  ++E +      L      L  + 
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 15/157 (9%), Positives = 49/157 (31%), Gaps = 10/157 (6%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
           +        +  +        + QD  N   + +R          +  L   +  +  + 
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231

Query: 73  QWEKGYFRKGCILEAMEQYDD------ALSAFQTALQYNPQSAEV---SRKIKRVSQLAK 123
           +    + ++  ++     Y+D       +      ++  P +       + I +   L+K
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK 291

Query: 124 DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC 160
                 ++ +++ +     +L  F  ++ E     +C
Sbjct: 292 YPNLLNQLLDLQPSHSSP-YLIAFLVDIYEDMLENQC 327

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 9/80 (11%), Positives = 29/80 (36%), Gaps = 1/80 (1%)

Query: 33  AIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ-Y 91
            I        ++    A      +  +A       I LN      +  +  +L+++++  
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 92  DDALSAFQTALQYNPQSAEV 111
            + ++     ++  P++ +V
Sbjct: 149 HEEMNYITAIIEEQPKNYQV 168

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 3/96 (3%)

Query: 21  GNYLKAAALYTQAIK---QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG 77
           G   +A   Y +AI    Q       +    + F  L +  KA A     +   P  +  
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 78  YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113
                 +L  + +Y+  +      +        +  
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
           G+ F   G Y KA A+    +KQ P++  L    A    +L +  + +      I+    
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93

Query: 74  WEK-GYFRKGCILEAMEQYDDAL 95
            E    +++     A+  Y D L
Sbjct: 94  DETIQSYKQ-----AILFYADKL 111

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 24  LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83
           L         + +  +   ++  +A + L   K +++     T I L   W   Y   G 
Sbjct: 260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGK 318

Query: 84  ILEAMEQYDDALSAFQTALQYNP 106
           + E      +A  A+ TA    P
Sbjct: 319 VYEMKGMNREAADAYLTAFNLRP 341

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 11/99 (11%), Positives = 26/99 (26%), Gaps = 10/99 (10%)

Query: 18  FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLN----------KALADAETT 67
               +  +A+ L  + ++  P      + +A   +     +              D   T
Sbjct: 210 GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
           +         Y  K        + D++  A  T +    
Sbjct: 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 17/117 (14%), Positives = 26/117 (22%), Gaps = 3/117 (2%)

Query: 17  FFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL--VKLNKALADAETTISLNPQW 74
             K      A     +   QD          A   L     KL  A    +         
Sbjct: 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199

Query: 75  EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV-SRKIKRVSQLAKDKKRAQE 130
                 +     A  +++ A    Q AL  +    E     +     L K  +    
Sbjct: 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 4/98 (4%)

Query: 18  FKAGNYLKAAALYTQAIK--QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE 75
             A +          A++      +    +      L L +L+ A  + +     +    
Sbjct: 105 LMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT 164

Query: 76  KGYFRKGCILEAM--EQYDDALSAFQTALQYNPQSAEV 111
                   +  A   E+  DA   FQ        +  +
Sbjct: 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLL 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 57/397 (14%), Positives = 99/397 (24%), Gaps = 138/397 (34%)

Query: 10  LKDKGNE----FFKAG---NY--LKAAALYTQAIKQDPSNPT---------------LFS 45
           L  K  E    F +     NY  L  + + T+   + PS  T               +F+
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQ--RQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 46  ----NRAAAFLHLVKLNKALADAETTISLNPQWEKG---YFRKGC--------------I 84
               +R   +L   KL +AL      + L P   K        G               +
Sbjct: 128 KYNVSRLQPYL---KLRQAL------LELRP--AKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 85  LEAME-----------QYDDALSAFQTALQYN-----PQSAEVSRKIKRVSQLAKDKKRA 128
              M+              + +      L Y         ++ S  IK      + + R 
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 129 QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188
                   N  +V  L   ++         + W   F+   + + T       T     +
Sbjct: 237 LLKSKPYENCLLV--LLNVQNA--------KAWNA-FNLSCKILLT-------TR--FKQ 276

Query: 189 VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAP----- 243
           V    D     T  +  + +               ++L     D          P     
Sbjct: 277 V---TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSI 332

Query: 244 --KSIISYPQVWRGQGLRKWRHSQQD-------GFFVQFESPLLRKLW-----F-----I 284
             +SI      W       W+H   D             E    RK++     F     I
Sbjct: 333 IAESIRDGLATWDN-----WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 285 PSSNEKGKTLCR-----DPEVLDISAHEVFPRLFKEK 316
           P+       L           + +  +++      EK
Sbjct: 388 PT-----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 2/129 (1%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
           A+  E+  L  + +E  + G + +A  +      +  S   +   +A   L   +   A 
Sbjct: 3   ASPDEQ--LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQ 60

Query: 62  ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121
               T                  L         L   +  L  NP + E++ ++      
Sbjct: 61  ELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ 120

Query: 122 AKDKKRAQE 130
               + A E
Sbjct: 121 VGRDEEALE 129

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNK 59
           EA  + L  +G    K+G+     + +  A++    +      ++S    A+ +L    K
Sbjct: 6   EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65

Query: 60  ALADAETTISLNPQWE------KGYFRKGCILEAMEQYDDALSAFQTALQ 103
           AL      ++L           K     G  L+ +  +D+A+   Q  L 
Sbjct: 66  ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 2   AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKL 57
           +A    + L  +G    K+G+     + +  A++    +      ++S    A+ +L   
Sbjct: 2   SASC--LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59

Query: 58  NKALA------DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103
            KAL           TI       K     G  L+ +  +D+A+   Q  L 
Sbjct: 60  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	320
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.95
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.95
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.93
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.93
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.92
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.92
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.91
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.91
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.91
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.91
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.91
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.9
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.9
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.9
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.9
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.9
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.9
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.89
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.89
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.89
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.88
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.88
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.88
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.87
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.86
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.86
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.86
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.86
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.86
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.85
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.85
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.85
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.85
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.85
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.85
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.84
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.84
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.84
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.83
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.83
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.83
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.83
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.83
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.83
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.82
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.82
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.82
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.82
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.82
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.8
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.8
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.8
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.8
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.8
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.8
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.8
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.8
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.8
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.79
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.79
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.79
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.79
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.79
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.78
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.78
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.78
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.78
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.77
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.77
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.76
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.76
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.76
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.76
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.75
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.75
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.75
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.75
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.75
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.75
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.74
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.74
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.74
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.74
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.73
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.73
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.72
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.72
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.72
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.72
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.71
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.71
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.71
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.7
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.7
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.7
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.7
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.68
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.68
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.68
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.68
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.67
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.66
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.66
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.65
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.64
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.64
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.64
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.63
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.63
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.63
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.63
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.62
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.6
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.6
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.6
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.59
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.59
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.59
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.58
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.58
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.57
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.57
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.56
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.56
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.54
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.54
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.54
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.53
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.53
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.53
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.52
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.52
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.52
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.52
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.51
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.51
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.5
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.5
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.48
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.48
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.48
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.47
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.47
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.47
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.47
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.46
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.44
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.43
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.43
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.42
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.42
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.41
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.41
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.4
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.4
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.4
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.39
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.36
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.36
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.34
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.3
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.3
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.26
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.25
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.19
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.16
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.13
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.13
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.09
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.08
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.07
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.06
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.06
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.02
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.01
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.99
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.98
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.98
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.94
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.88
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.74
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.68
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.62
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.6
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.35
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.35
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.31
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.13
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.11
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.09
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.08
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.99
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.98
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.79
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.7
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.7
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.68
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.58
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.34
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.15
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.07
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.0
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.69
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.68
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.6
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.51
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.5
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.68
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.38
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.31
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.1
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.95
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.48
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.27
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.27
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	93.11
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.66
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.51
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.39
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.16
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.54
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	89.62
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	87.5
2vkj_A	106	TM1634; membrane protein, TPR motif joint center f	86.76
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	85.06
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.88
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	84.79
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	84.52
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	83.59
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	82.47
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	82.27
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	82.12
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	82.0
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	81.55
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	81.48
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	80.24
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	80.08

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=5e-30  Score=226.35  Aligned_cols=256  Identities=15%  Similarity=0.160  Sum_probs=127.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |.++.++..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++++|++..++..+|.
T Consensus        64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  143 (388)
T 1w3b_A           64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN  143 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (320)
                      ++..+|++++|++.|+++++.+|++..+|..+|.++...|++++|+..+.  ..+..    .+.....+..+|.++...|
T Consensus       144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~~----~p~~~~~~~~lg~~~~~~~  217 (388)
T 1w3b_A          144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE--KAVTL----DPNFLDAYINLGNVLKEAR  217 (388)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH--HHHHH----CTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHHhc----CCCcHHHHHHHHHHHHHcC
Confidence            44444444444444444444444444444444444444444444433321  11111    1111122222333333333


Q ss_pred             HHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--H
Q 020914          164 VFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--A  230 (320)
Q Consensus       164 ~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A  230 (320)
                      .+.       +|+..+.+++.+.|.          ++...|++++|+..|+++++++|.....+. +|.++...|++  |
T Consensus       218 ~~~-------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  290 (388)
T 1w3b_A          218 IFD-------RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA  290 (388)
T ss_dssp             CTT-------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred             CHH-------HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            333       333333333333332          566667777777777777777666543333 66666666666  7


Q ss_pred             HHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccccc
Q 020914          231 DDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPL  277 (320)
Q Consensus       231 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  277 (320)
                      ++.|++++++     .|..+.+|.++|.++...|+++++...+++..
T Consensus       291 ~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  332 (388)
T 1w3b_A          291 EDCYNTALRL-----CPTHADSLNNLANIKREQGNIEEAVRLYRKAL  332 (388)
T ss_dssp             HHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHhh-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7777777766     55556667777777777777766665555433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=8.7e-30  Score=224.80  Aligned_cols=269  Identities=11%  Similarity=0.083  Sum_probs=226.7

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++.+|+++.+|..+|
T Consensus        97 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  176 (388)
T 1w3b_A           97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG  176 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            57788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhh
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK  162 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (320)
                      .++...|++++|+..|+++++++|++..++..+|.++...|++++|+....  ..+..    .+....+...+|.++...
T Consensus       177 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~--~al~~----~p~~~~~~~~l~~~~~~~  250 (388)
T 1w3b_A          177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL--RALSL----SPNHAVVHGNLACVYYEQ  250 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHH--HHHHH----CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH--HHHhh----CcCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999976642  22222    223344555667777777


Q ss_pred             hHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHH
Q 020914          163 HVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSS  236 (320)
Q Consensus       163 ~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~  236 (320)
                      |.+..+...++++++..+.......   .++...|++++|+..|++++++.|.....+. +|.++...+++  |+..|++
T Consensus       251 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  330 (388)
T 1w3b_A          251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7777777776666654332111111   1788889999999999999999987754444 88889999999  9999999


Q ss_pred             HhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccccccc
Q 020914          237 AACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLW  282 (320)
Q Consensus       237 al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  282 (320)
                      ++++     .|..+.+|.++|.++..+|+++++...+++.....+.
T Consensus       331 al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  371 (388)
T 1w3b_A          331 ALEV-----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HTTS-----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            9988     7778999999999999999999998888776554443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.95  E-value=7.3e-28  Score=211.41  Aligned_cols=247  Identities=12%  Similarity=-0.008  Sum_probs=199.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      +|..+.++..+|.++...|++++|+..|+++|+++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..+|+++
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~  172 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  172 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            688999999999999999999999999999999999999999999999999997 9999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (320)
                      |.++..+|++++|+.+|+++|+++|++..+|..+|.++...|++++|+..+  ...+..    .+....++..+|.++..
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~--~~al~l----~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV--DQLLKE----DVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH--HHHHHH----CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH--HHHHHh----CCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999997764  233332    23334444455555544


Q ss_pred             -hhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhc--ChhHHHHhhhhhhccccCcCCcc-chhhHHHHhh
Q 020914          162 -KHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLD--KEKTDTEKYAPIVNVDKAFESPH-THGSCFQFLR  227 (320)
Q Consensus       162 -~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg--~~~~A~~~~~~a~~~~~~~~~~~-~~g~~~~~~~  227 (320)
                       .+....++  .+.++..+.+++.++|.          ++...|  ++++|++.+..+ +.+|...... .+|.++..++
T Consensus       247 l~~~~~eA~--~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~  323 (382)
T 2h6f_A          247 TTGYNDRAV--LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML  323 (382)
T ss_dssp             TTCSCSHHH--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred             hcCcchHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence             22222221  22234556666666665          455556  689999999888 7777664333 3888888874


Q ss_pred             --------H-H--HHHHHHHH-hchhCCCCCCChhHhhhccccccccc
Q 020914          228 --------Q-Y--ADDSFSSA-ACLVAPKSIISYPQVWRGQGLRKWRH  263 (320)
Q Consensus       228 --------~-~--A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~l  263 (320)
                              + +  |++.|+++ +++     +|.....|..++..+...
T Consensus       324 ~~~~~~~~~~~~~A~~~~~~l~~~~-----DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          324 ENQCDNKEDILNKALELCEILAKEK-----DTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHHH
Confidence                    3 4  99999999 888     888888999998765543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.95  E-value=1.1e-27  Score=194.78  Aligned_cols=195  Identities=17%  Similarity=0.192  Sum_probs=151.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHh
Q 020914           84 ILEAM-----------EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMS  152 (320)
Q Consensus        84 ~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  152 (320)
                      ++..+           |++++|+..|+++++++|+++.++..+|.++...|++++|+..                     
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~---------------------  140 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEAS---------------------  140 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH---------------------
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHH---------------------
Confidence            99999           9999999999999999999999999998888777777666433                     


Q ss_pred             hhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCc-cchhhHHHHhhHH--
Q 020914          153 EKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESP-HTHGSCFQFLRQY--  229 (320)
Q Consensus       153 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~-~~~g~~~~~~~~~--  229 (320)
                                                                        |+++++++ ..... ..+|.++...|++  
T Consensus       141 --------------------------------------------------~~~al~~~-~~~~~~~~la~~~~~~g~~~~  169 (217)
T 2pl2_A          141 --------------------------------------------------LKQALALE-DTPEIRSALAELYLSMGRLDE  169 (217)
T ss_dssp             --------------------------------------------------HHHHHHHC-CCHHHHHHHHHHHHHHTCHHH
T ss_pred             --------------------------------------------------HHHHHhcc-cchHHHHHHHHHHHHcCCHHH
Confidence                                                              22222222 11111 1266667777777  


Q ss_pred             HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          230 ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       230 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      |+..|++++++     +|.++.++.++|.++..+|+++++...+++
T Consensus       170 A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          170 ALAQYAKALEQ-----APKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHHHH-----STTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHh-----CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            77777777777     666677777777777777777777655543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.95  E-value=4.2e-28  Score=212.20  Aligned_cols=263  Identities=14%  Similarity=0.137  Sum_probs=206.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      ++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.+|
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY  143 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            45669999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhh
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKI----------KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY  155 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (320)
                      ..+|++++|+..|+++++++|++..++..+          |.++...|++++|+....  ..+...+..  ....+...+
T Consensus       144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~--~~~~~~~~l  219 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL--EAAHQNGDM--IDPDLQTGL  219 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHH--HHHHHSCSS--CCHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH--HHHHhCcCc--cCHHHHHHH
Confidence            999999999999999999999887766555          889999999999987753  222222110  033455566


Q ss_pred             cchhhhhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--
Q 020914          156 GAEECWKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--  229 (320)
Q Consensus       156 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--  229 (320)
                      |.++...|.+..|...+++++...+......-.   ++...|++++|+..|++++++.|.....+. +|.++..+|++  
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            777777777777777777666554432211111   888999999999999999999998755554 89999999999  


Q ss_pred             HHHHHHHHhchhCCCCCCC-------hhHhhhcccccccccCcccchhhh
Q 020914          230 ADDSFSSAACLVAPKSIIS-------YPQVWRGQGLRKWRHSQQDGFFVQ  272 (320)
Q Consensus       230 A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~  272 (320)
                      |+..|++++++.|....+.       ...+|.++|.++..+|+.+.+...
T Consensus       300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  349 (365)
T 4eqf_A          300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA  349 (365)
T ss_dssp             HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            9999999999976654321       467899999999999988765433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.95  E-value=4.2e-27  Score=204.27  Aligned_cols=268  Identities=16%  Similarity=0.168  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      +++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            45566666666666777777777777766666666666666676666666776776666666666666666666666666


Q ss_pred             HHccCHHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhh------------
Q 020914           86 EAMEQYDDALSAFQTALQYNP---QSAEVSRKI------------KRVSQLAKDKKRAQEVENIRSNV------------  138 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~------------  138 (320)
                      ...|++++|+..|+++++++|   ++..++..+            +.++...|++++|+.........            
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            666666666666666666666   555555555            45555566666665443210000            


Q ss_pred             ----------------HHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------------h
Q 020914          139 ----------------DMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------------A  187 (320)
Q Consensus       139 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------------~  187 (320)
                                      .......+....+...+|.++...|.+..+...+++++...+......               .
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a  241 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA  241 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence                            000011111223344445555555555555555555554433322110               1


Q ss_pred             hHHhhhcChhHHHHhhhhhhccccCcCCc-----cchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccc
Q 020914          188 KVYFLLDKEKTDTEKYAPIVNVDKAFESP-----HTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRK  260 (320)
Q Consensus       188 ~~~~~lg~~~~A~~~~~~a~~~~~~~~~~-----~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  260 (320)
                      .++...|++++|+..+++++++.|.....     ..+|.++...+++  |+..|+++++.     +|..+.+|..+|.++
T Consensus       242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-----EPDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHH
Confidence            14778899999999999999988875321     1267888888888  99999999988     777799999999999


Q ss_pred             cccCcccchhhhcccccc
Q 020914          261 WRHSQQDGFFVQFESPLL  278 (320)
Q Consensus       261 ~~l~~~~~~~~~~~~~~~  278 (320)
                      ..+|+++++...++....
T Consensus       317 ~~~g~~~~A~~~~~~a~~  334 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQE  334 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHh
Confidence            999999998877776544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=199.37  Aligned_cols=268  Identities=14%  Similarity=0.091  Sum_probs=191.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |.++..+..+|..++..|++++|+..|+++++.+|.+..++..++.++..+|++++|+..++++++.+|+++.+++.+|.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   98 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC   98 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            44556777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhh
Q 020914           84 ILEAME-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK  162 (320)
Q Consensus        84 ~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (320)
                      ++...| ++++|+..|+++++++|++..++..+|.++...|++++|+....  ..+...    +........+|..+...
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~a~~~~----~~~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF--TAAQLM----KGCHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHH--HHHHHT----TTCSHHHHHHHHHHHHT
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHH--HHHHhc----cccHHHHHHHHHHHHHH
Confidence            888888 88888888888888888888888888888888888888866642  222221    11223344466667777


Q ss_pred             hHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccC---------cCCcc-chhhHHHHhhHH
Q 020914          163 HVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKA---------FESPH-THGSCFQFLRQY  229 (320)
Q Consensus       163 ~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~---------~~~~~-~~g~~~~~~~~~  229 (320)
                      |.+..+...+++++...+.......   .++...|++++|+..+++++.+.+.         ....+ .+|.++...+++
T Consensus       173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            7777777777777765544322111   1677777778888777777776422         11122 267777777777


Q ss_pred             --HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccccccc
Q 020914          230 --ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLW  282 (320)
Q Consensus       230 --A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  282 (320)
                        |+..|++++++     .|..+.+|.++|.++..+|+++++...++......+.
T Consensus       253 ~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          253 AEALDYHRQALVL-----IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             HHHHHHHHHHHHH-----STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             HHHHHHHHHHHhh-----CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence              77788888777     5556777777787777778777777776665444433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=2e-27  Score=204.24  Aligned_cols=254  Identities=13%  Similarity=0.038  Sum_probs=220.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      .|.+...+..+|.++...|++++|+..++++++.+|.++.++..+|.++...| ++++|+..|+++++++|+++.+|..+
T Consensus        52 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  131 (330)
T 3hym_B           52 DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAY  131 (330)
T ss_dssp             CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHH
T ss_pred             CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            46667788889999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (320)
                      |.++...|++++|+..|++++++.|++..++..+|.++...|++++|+....  ..+.    ..+....+...+|.++..
T Consensus       132 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~al~----~~~~~~~~~~~l~~~~~~  205 (330)
T 3hym_B          132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS--QALS----IAPEDPFVMHEVGVVAFQ  205 (330)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH--HHHT----TCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH--HHHH----hCCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999977743  2322    333445677788888999


Q ss_pred             hhHHHHHHHHHHHHHHhHhhcccc-----Ch-------hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhH
Q 020914          162 KHVFSFVVETMETAVKSWHETSKV-----DA-------KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQ  228 (320)
Q Consensus       162 ~~~~~~a~~~~~~a~~~~~~~~~~-----~~-------~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~  228 (320)
                      .|.+..+...+++++...+.....     .+       .++..+|++++|+..+++++++.|.....+. +|.++...++
T Consensus       206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  285 (330)
T 3hym_B          206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN  285 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence            999999999999998876442211     11       1888999999999999999999998765555 8999999999


Q ss_pred             H--HHHHHHHHhchhCCCCCCChhHhhhcccccc-cccCccc
Q 020914          229 Y--ADDSFSSAACLVAPKSIISYPQVWRGQGLRK-WRHSQQD  267 (320)
Q Consensus       229 ~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~  267 (320)
                      +  |++.|++++++     .|.++.+|..+|.++ ..+|+.+
T Consensus       286 ~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          286 FENAVDYFHTALGL-----RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHTTTTT-----CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHHHcc-----CCCchHHHHHHHHHHHHHhCchh
Confidence            9  99999999998     788899999999988 5555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=7.9e-27  Score=203.89  Aligned_cols=264  Identities=12%  Similarity=0.079  Sum_probs=215.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   86 (320)
                      +..++.+|.+++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHH
Q 020914           87 AMEQYDDALSAFQTALQYNPQSAEVSR----------------KIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE  150 (320)
Q Consensus        87 ~~~~~~~A~~~~~~al~~~p~~~~~~~----------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  150 (320)
                      .+|++++|+..|+++++++|++..++.                .++.++ ..|++++|+....  ..+...+...  ...
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~--~a~~~~p~~~--~~~  218 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFL--AAVRLDPTSI--DPD  218 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHH--HHHHHSTTSC--CHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHH--HHHHhCcCcc--cHH
Confidence            999999999999999999999887765                466666 8899999977743  2222221100  344


Q ss_pred             HhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHh
Q 020914          151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFL  226 (320)
Q Consensus       151 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~  226 (320)
                      +...+|.++...|.+..|...+++++...+......-   .++...|++++|+..|++++++.|.....+. +|.++...
T Consensus       219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL  298 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            5566677777777777777777777665433221111   1888999999999999999999987754544 89999999


Q ss_pred             hHH--HHHHHHHHhchhCCCCC------CChhHhhhcccccccccCcccchhhhccc
Q 020914          227 RQY--ADDSFSSAACLVAPKSI------ISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       227 ~~~--A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      |++  |+..|++++.+.|....      +..+.+|.++|.++..+|+++.+......
T Consensus       299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            999  99999999998665522      23478999999999999999988655443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=1.8e-26  Score=207.15  Aligned_cols=272  Identities=17%  Similarity=0.173  Sum_probs=209.3

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      .+|.++..++.+|..++..|++++|+..|+++++.+|.++.+++.+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus        21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  100 (450)
T 2y4t_A           21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR  100 (450)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHHHHHHHHHHHHHHHhhhh--------
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSA---EVSRKI------------KRVSQLAKDKKRAQEVENIRSNV--------  138 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~--------  138 (320)
                      |.+|..+|++++|+..|+++++++|++.   .++..+            |.++...|++++|+.........        
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  180 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR  180 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence            9999999999999999999999999988   777666            55577788888887664321100        


Q ss_pred             --------------------HHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC------------
Q 020914          139 --------------------DMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD------------  186 (320)
Q Consensus       139 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~------------  186 (320)
                                          .......+....++..++.++...|.+..|+..+++++...+......            
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  260 (450)
T 2y4t_A          181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL  260 (450)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence                                000001111223344444555555555555555555554433221111            


Q ss_pred             ---hhHHhhhcChhHHHHhhhhhhccccCcC-----CccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcc
Q 020914          187 ---AKVYFLLDKEKTDTEKYAPIVNVDKAFE-----SPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQ  256 (320)
Q Consensus       187 ---~~~~~~lg~~~~A~~~~~~a~~~~~~~~-----~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~  256 (320)
                         ..++...|++++|+..|++++++.|...     ....+|.++...+++  |+..|++++.+     .|..+.+|..+
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~~~l  335 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-----EPDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHH
Confidence               1256778999999999999999988742     122378888888888  99999999988     77779999999


Q ss_pred             cccccccCcccchhhhcccccc
Q 020914          257 GLRKWRHSQQDGFFVQFESPLL  278 (320)
Q Consensus       257 ~~~~~~l~~~~~~~~~~~~~~~  278 (320)
                      |.++..+|+++++...++....
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQE  357 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999998877766443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.94  E-value=1.3e-26  Score=198.76  Aligned_cols=266  Identities=10%  Similarity=0.099  Sum_probs=215.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      .++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.+
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   98 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   98 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHH--------------HH-HHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHH
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKI--------------KR-VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS  149 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  149 (320)
                      +...|++++|+..|+++++.+|.+..++..+              +. ++...|++++|+....  ..+..    .+...
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~~~~~----~~~~~  172 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH--AALEM----NPNDA  172 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH--HHHHH----STTCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH--HHHhh----CCCCH
Confidence            9999999999999999999999998888777              66 6778899999977643  22222    12234


Q ss_pred             HHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHH
Q 020914          150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQF  225 (320)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~  225 (320)
                      .+...++.++...|.+..+...+++++...+.......   .++...|++++|+..+++++++.|.....+. +|.++..
T Consensus       173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            55666677777777777777777777665433221111   1888899999999999999999987654444 8999999


Q ss_pred             hhHH--HHHHHHHHhchhCCCCCCC-------hhHhhhcccccccccCcccchhhhcccc
Q 020914          226 LRQY--ADDSFSSAACLVAPKSIIS-------YPQVWRGQGLRKWRHSQQDGFFVQFESP  276 (320)
Q Consensus       226 ~~~~--A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~  276 (320)
                      .+++  |+..|++++.+.|....+.       .+.+|..+|.++..+|+++.+...+...
T Consensus       253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            9999  9999999999955432222       6889999999999999999987666653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.94  E-value=1.1e-26  Score=201.52  Aligned_cols=237  Identities=9%  Similarity=0.032  Sum_probs=160.8

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      ++..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHH----HHhHHHHH-----HHHhhhhcchhhhh---------------------------h
Q 020914          120 QLAKDKKRAQEVENIRSNVDM----VQHLDEFK-----SEMSEKYGAEECWK---------------------------H  163 (320)
Q Consensus       120 ~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~---------------------------~  163 (320)
                      ...|++++|+...........    ........     .......+..+...                           +
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            999999999887542211111    00000000     00011112222223                           3


Q ss_pred             HHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-------------hh
Q 020914          164 VFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-------------HG  220 (320)
Q Consensus       164 ~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-------------~g  220 (320)
                      ......+.+++|+..+.+++.+.|.          ++...|++++|+..+++++++.|.....+.             .|
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a  241 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA  241 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence            3333344444555555555554443          666667777777777777777665533221             25


Q ss_pred             hHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccccc
Q 020914          221 SCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPL  277 (320)
Q Consensus       221 ~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  277 (320)
                      .++...+++  |+..|++++...|... .....++..+|.++..+|+++++...++...
T Consensus       242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  299 (359)
T 3ieg_A          242 EELIRDGRYTDATSKYESVMKTEPSVA-EYTVRSKERICHCFSKDEKPVEAIRICSEVL  299 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            556666666  7777777776632211 1112446667777777787777776665533

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.4e-25  Score=202.74  Aligned_cols=264  Identities=18%  Similarity=0.206  Sum_probs=213.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      ...+.+++.+|..++..|+|++|+..|++++..+| ++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            46789999999999999999999999999999999 69999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCC-------------------------------------------------------
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQS-------------------------------------------------------  108 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~-------------------------------------------------------  108 (320)
                      ++..+|++++|+..|+++++.+|.+                                                       
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            9999999999999999999998743                                                       


Q ss_pred             ------------------------HHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHH-------HH---hHHHHHHHH
Q 020914          109 ------------------------AEVSRKIKRVSQL---AKDKKRAQEVENIRSNVDM-------VQ---HLDEFKSEM  151 (320)
Q Consensus       109 ------------------------~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~-------~~---~~~~~~~~~  151 (320)
                                              ..++..+|.+...   .|++++|+....  ..+..       .+   ...+....+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT--KAARLFEEQLDKNNEDEKLKEKLAIS  239 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH--HHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH--HHHHHhhhhhccCccccccChHHHHH
Confidence                                    5556666666554   788888877643  22221       11   112455667


Q ss_pred             hhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhh
Q 020914          152 SEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLR  227 (320)
Q Consensus       152 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~  227 (320)
                      ...+|..+...|.+..+...+++++...+. ....-   .++...|++++|+..+++++.+.|.....+. +|.++...+
T Consensus       240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence            777788888888888888888888766544 11111   1778888999999999999988887655444 788888888


Q ss_pred             HH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccc
Q 020914          228 QY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESP  276 (320)
Q Consensus       228 ~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  276 (320)
                      ++  |+..|++++..     .|..+.+|..+|.++..+|+++++...+...
T Consensus       319 ~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  364 (514)
T 2gw1_A          319 NYDQAGKDFDKAKEL-----DPENIFPYIQLACLAYRENKFDDCETLFSEA  364 (514)
T ss_dssp             CTTHHHHHHHHHHHT-----CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh-----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88  99999999887     5666788888999999999888887666553

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=9.4e-25  Score=180.87  Aligned_cols=240  Identities=15%  Similarity=0.137  Sum_probs=186.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EK   76 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~   76 (320)
                      +..+..+..+|.+++..|++++|+.+|+++++.+ .++.++..+|.++..+|++++|+..++++++++|++       +.
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            6789999999999999999999999999999999 899999999999999999999999999999999877       79


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhc
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYG  156 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (320)
                      ++..+|.++..+|++++|+..|+++++++|.        +.++...|++++|+.....      .....+....+...+|
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~  146 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEA------EAYVNPEKAEEARLEG  146 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHH------HHHCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHH------HHHcCcchHHHHHHHH
Confidence            9999999999999999999999999999987        3455666777777655321      1122233445566667


Q ss_pred             chhhhhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--H
Q 020914          157 AEECWKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--A  230 (320)
Q Consensus       157 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A  230 (320)
                      .++...|.+..+...+++++...+......-.   ++...|++++|+..+++++++.|.....+. +|.++...+++  |
T Consensus       147 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            77777777777777777766654432211111   777888888888888888888887654444 78888888888  8


Q ss_pred             HHHHHHHhchhCCC-CCCChhHhhhcccc
Q 020914          231 DDSFSSAACLVAPK-SIISYPQVWRGQGL  258 (320)
Q Consensus       231 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~  258 (320)
                      +..|++++++.+.. ..|....++..++.
T Consensus       227 ~~~~~~a~~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          227 LETLDAARTKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence            88888888883211 01555666665544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.93  E-value=1.5e-25  Score=205.42  Aligned_cols=265  Identities=18%  Similarity=0.217  Sum_probs=173.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      +..+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..|+++++++|+++.+++.+|.
T Consensus        22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  101 (537)
T 3fp2_A           22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHH--------------------------------------------------
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSR--------------------------------------------------  113 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------------------------------------------------  113 (320)
                      ++..+|++++|+..|+ ++.++|+....+.                                                  
T Consensus       102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV  180 (537)
T ss_dssp             HHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred             HHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence            9999999999988884 6666555433210                                                  


Q ss_pred             ------------------HH--------HHHHHHHHHHHHHHHHHHHhhhhHHHHh---HHHHH----------------
Q 020914          114 ------------------KI--------KRVSQLAKDKKRAQEVENIRSNVDMVQH---LDEFK----------------  148 (320)
Q Consensus       114 ------------------~l--------~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~----------------  148 (320)
                                        .+        +......+++++|+....  ..+...+.   .....                
T Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~--~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~  258 (537)
T 3fp2_A          181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH--SLLSANTVDDPLRENAALALCYTGIFHFLKNN  258 (537)
T ss_dssp             HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH--HHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH--HHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence                              00        111122234445544322  11111110   01111                


Q ss_pred             -----------------HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhc
Q 020914          149 -----------------SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVN  208 (320)
Q Consensus       149 -----------------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~  208 (320)
                                       ......+|.++...|.+..+...+++++...+.......   .++...|++++|+..+++++.
T Consensus       259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  338 (537)
T 3fp2_A          259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS  338 (537)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence                             122233333344444444444444444433222111100   166677777777777777777


Q ss_pred             cccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccc
Q 020914          209 VDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESP  276 (320)
Q Consensus       209 ~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  276 (320)
                      ++|.....+. +|.++...|++  |+..|++++..     .|..+.+|.++|.++..+|+++++...++..
T Consensus       339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK-----FPTLPEVPTFFAEILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            7776544443 67777777777  77777777777     5556777777777777777777776666553

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.93  E-value=2.6e-25  Score=186.24  Aligned_cols=245  Identities=15%  Similarity=0.128  Sum_probs=187.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRK   81 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~l   81 (320)
                      +++.++..|.+++..|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..++++++ .|++    ..+|..+
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999 4443    4569999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (320)
                      |.++..+|++++|+..|+++++++|++..++..+|.++...|++++|+....  ..+..    .+....++..+|.....
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~al~~----~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME--KQIRP----TTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG--GGCCS----SCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH--HHhhc----CCCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987753  33322    22223344445522222


Q ss_pred             hhHHHHHHHHHHHHHHhHhhccccC---hhHHhhhcC---hhHHHHhhhhhhccc---cCc------CCccchhhHHHHh
Q 020914          162 KHVFSFVVETMETAVKSWHETSKVD---AKVYFLLDK---EKTDTEKYAPIVNVD---KAF------ESPHTHGSCFQFL  226 (320)
Q Consensus       162 ~~~~~~a~~~~~~a~~~~~~~~~~~---~~~~~~lg~---~~~A~~~~~~a~~~~---~~~------~~~~~~g~~~~~~  226 (320)
                      .+.+..|...++++++..+......   ..++..+|+   +++|+..+++++++.   |..      .....+|.++...
T Consensus       155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  234 (272)
T 3u4t_A          155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN  234 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence            3355555555555555443321110   117777788   888999999999885   331      1122378888888


Q ss_pred             hHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccc
Q 020914          227 RQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWR  262 (320)
Q Consensus       227 ~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  262 (320)
                      +++  |++.|++++++     +|.++.++-.++.+...
T Consensus       235 ~~~~~A~~~~~~al~~-----~p~~~~a~~~l~~~~~~  267 (272)
T 3u4t_A          235 RDKVKADAAWKNILAL-----DPTNKKAIDGLKMKLEH  267 (272)
T ss_dssp             TCHHHHHHHHHHHHHH-----CTTCHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHhc-----CccHHHHHHHhhhhhcc
Confidence            888  99999999999     78889999888765543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.93  E-value=3e-24  Score=158.97  Aligned_cols=117  Identities=38%  Similarity=0.643  Sum_probs=114.4

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      +|+.++++.++|+.++..|+|++|+..|+++++++|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+|
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg   88 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA   88 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      .++..+|++++|++.|+++++++|++..++..++.++
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999988763

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=1.7e-24  Score=194.19  Aligned_cols=248  Identities=12%  Similarity=0.058  Sum_probs=148.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--------
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE--------   75 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--------   75 (320)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..|+++++++|++.        
T Consensus        57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  136 (450)
T 2y4t_A           57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ  136 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            455566666666666666666666666666666666666666666666666666666666666666655554        


Q ss_pred             -----------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914           76 -----------------------------------------KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (320)
Q Consensus        76 -----------------------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  114 (320)
                                                               .++..+|.+|...|++++|+..|+++++.+|+++.++..
T Consensus       137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  216 (450)
T 2y4t_A          137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK  216 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence                                                     444444444444444444444444444444444445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHH--------HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcccc-
Q 020914          115 IKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK--------SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV-  185 (320)
Q Consensus       115 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-  185 (320)
                      +|.++...|++++|+....  ..+...+......        .......+..+...|.+..+...+++++...+..... 
T Consensus       217 l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  294 (450)
T 2y4t_A          217 ISTLYYQLGDHELSLSEVR--ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT  294 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHH--HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHH--HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH
Confidence            5555554555555444321  1111111100000        0001112455555566666666666665544331110 


Q ss_pred             ------ChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcc
Q 020914          186 ------DAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQ  256 (320)
Q Consensus       186 ------~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~  256 (320)
                            ...++...|++++|+..+++++.+.|.....+. +|.++...+++  |+..|++++++     .|..+.+|..+
T Consensus       295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l  369 (450)
T 2y4t_A          295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-----NENDQQIREGL  369 (450)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CcchHHHHHHH
Confidence                  011788889999999999999999987755554 89999999999  99999999998     77779999999


Q ss_pred             cc
Q 020914          257 GL  258 (320)
Q Consensus       257 ~~  258 (320)
                      +.
T Consensus       370 ~~  371 (450)
T 2y4t_A          370 EK  371 (450)
T ss_dssp             HH
T ss_pred             HH
Confidence            83

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.92  E-value=7.1e-25  Score=203.74  Aligned_cols=264  Identities=13%  Similarity=0.101  Sum_probs=220.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |.++..+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  381 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI  381 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (320)
                      +|...|++++|++.|+++++++|.+..+|..++.++...|++++|++.+..  .+..    .+.....+..++..+...|
T Consensus       382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~----~~~~~~~~~~l~~~~~~~g  455 (597)
T 2xpi_A          382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT--AARL----FQGTHLPYLFLGMQHMQLG  455 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH--HHHT----TTTCSHHHHHHHHHHHHHT
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--HHHh----CccchHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999877532  1111    1223344555667777777


Q ss_pred             HHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccc------cCc--CCccchhhHHHHhhHH--H
Q 020914          164 VFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVD------KAF--ESPHTHGSCFQFLRQY--A  230 (320)
Q Consensus       164 ~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~------~~~--~~~~~~g~~~~~~~~~--A  230 (320)
                      .++.+...++++++..+.......   .++...|++++|++.|++++++.      |..  .....+|.++...|++  |
T Consensus       456 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A  535 (597)
T 2xpi_A          456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA  535 (597)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence            777777777777654433111111   18888999999999999999883      432  1222388889999999  9


Q ss_pred             HHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914          231 DDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL  278 (320)
Q Consensus       231 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  278 (320)
                      ++.|++++++     .|..+.+|..+|.++..+|+++++...+++...
T Consensus       536 ~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  578 (597)
T 2xpi_A          536 IDALNQGLLL-----STNDANVHTAIALVYLHKKIPGLAITHLHESLA  578 (597)
T ss_dssp             HHHHHHHHHH-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            9999999988     677789999999999999999999877766444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.92  E-value=2.8e-25  Score=194.04  Aligned_cols=256  Identities=14%  Similarity=0.083  Sum_probs=194.2

Q ss_pred             HHHHHcCCHHHHHH-HHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 020914           15 NEFFKAGNYLKAAA-LYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME   89 (320)
Q Consensus        15 ~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~   89 (320)
                      .++...|+|++|+. .|++++.+.|.++    ..++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|
T Consensus        33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           33 EAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence            36677899999999 9999999988874    669999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHH------------HHHhhhhcc
Q 020914           90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK------------SEMSEKYGA  157 (320)
Q Consensus        90 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~  157 (320)
                      ++++|+..|+++++++|++..++..+|.++...|++++|+....  ..+...+......            .......+.
T Consensus       113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 1fch_A          113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR--DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS  190 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHTSTTTGGGCC---------------CTTHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence            99999999999999999999999999999999999999987753  2222111110000            000112333


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHhhcc--ccC---hhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--
Q 020914          158 EECWKHVFSFVVETMETAVKSWHETS--KVD---AKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--  229 (320)
Q Consensus       158 ~~~~~~~~~~a~~~~~~a~~~~~~~~--~~~---~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--  229 (320)
                      .. ..|.+..+...+++++...+...  ...   ..++...|++++|+..+++++.+.|.....+. +|.++...+++  
T Consensus       191 ~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          191 LL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             Hh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence            33 55666666666666665544411  111   11888899999999999999999988754544 89999999999  


Q ss_pred             HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914          230 ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL  278 (320)
Q Consensus       230 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  278 (320)
                      |+..|++++.+     .|..+.+|.++|.++..+|+++++...++....
T Consensus       270 A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  313 (368)
T 1fch_A          270 AVAAYRRALEL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALN  313 (368)
T ss_dssp             HHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999998     777799999999999999999999877766443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.91  E-value=1.3e-23  Score=195.20  Aligned_cols=247  Identities=11%  Similarity=0.032  Sum_probs=214.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |.+...+..++.++...|++++|+..+++++..+|+++.++..+|.+|...|++++|+..|+++++++|++..+|..+|.
T Consensus       336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  415 (597)
T 2xpi_A          336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH  415 (597)
T ss_dssp             TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            55667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (320)
                      +|...|++++|++.|+++++..|++..++..++.++...|++++|++...  ..+..    .+....++..++..+...|
T Consensus       416 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~----~~~~~~~~~~l~~~~~~~g  489 (597)
T 2xpi_A          416 SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ--SSYAL----FQYDPLLLNELGVVAFNKS  489 (597)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH--HHHHH----CCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH--HHHHh----CCCChHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999987753  22221    2223456677888888889


Q ss_pred             HHHHHHHHHHHHHHhHhhccccC---h-------hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--H
Q 020914          164 VFSFVVETMETAVKSWHETSKVD---A-------KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--A  230 (320)
Q Consensus       164 ~~~~a~~~~~~a~~~~~~~~~~~---~-------~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A  230 (320)
                      .++.|...++++++..++...-.   .       .++...|++++|+..++++++++|.....+. +|.++...|++  |
T Consensus       490 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  569 (597)
T 2xpi_A          490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA  569 (597)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            99999999999888765411110   1       1888999999999999999999987655554 89999999999  9


Q ss_pred             HHHHHHHhchhCCCCCCChhHhhhccccccc
Q 020914          231 DDSFSSAACLVAPKSIISYPQVWRGQGLRKW  261 (320)
Q Consensus       231 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  261 (320)
                      ++.|++++++     +|.++.+|..++.++.
T Consensus       570 ~~~~~~~l~~-----~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          570 ITHLHESLAI-----SPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHH-----CTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhc-----CCCChHHHHHHHHHHh
Confidence            9999999999     8888999999988764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.91  E-value=6.3e-24  Score=200.10  Aligned_cols=175  Identities=21%  Similarity=0.217  Sum_probs=155.7

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      +.|++++++.++|.++..+|++++|+.+|++|++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.+|+++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (320)
                      |.++..+|++++|+++|+++++++|++..++.++|.++...|++++|++.+  ++.+.    +.+....++..+|.++..
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~--~~Al~----l~P~~~~a~~~L~~~l~~  157 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY--RTALK----LKPDFPDAYCNLAHCLQI  157 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH--HHHHH----HCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH--HHHHH----hCCCChHHHhhhhhHHHh
Confidence            999999999999999999999999999999999999999999999997774  33333    333445566677777777


Q ss_pred             hhHHHHHHHHHHHHHHhHhhc
Q 020914          162 KHVFSFVVETMETAVKSWHET  182 (320)
Q Consensus       162 ~~~~~~a~~~~~~a~~~~~~~  182 (320)
                      .+.+..+...++++++...+.
T Consensus       158 ~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          158 VCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             TTCCTTHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhChhH
Confidence            787778888888877766553

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.91  E-value=4.9e-24  Score=189.12  Aligned_cols=272  Identities=14%  Similarity=0.139  Sum_probs=223.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCC
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTISL------NPQ   73 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~   73 (320)
                      |..+..++.+|..++..|++++|+..|+++++++|+++    .++..+|.+|..+|++++|+..+++++++      .|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            67788999999999999999999999999999999986    68999999999999999999999999998      577


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHH-----------------HHHHHH
Q 020914           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKD-----------------KKRAQE  130 (320)
Q Consensus        74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~-----------------~~~A~~  130 (320)
                      ...++..+|.+|..+|++++|+..|++++++      .|....++..+|.++...|+                 +++|+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            7899999999999999999999999999999      56667899999999999999                 888877


Q ss_pred             HHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcccc---------ChhHHhhhcChhHHHH
Q 020914          131 VENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV---------DAKVYFLLDKEKTDTE  201 (320)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~---------~~~~~~~lg~~~~A~~  201 (320)
                      .......+............++..+|.++...|.+..|...+++++...+.....         ...++..+|++++|+.
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE  284 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            6532222222222234455677778888888999999999999998877764321         1118889999999999


Q ss_pred             hhhhhhccccCcC-------CccchhhHHHHhhHH--HHHHHHHHhchhCCCC-CCChhHhhhcccccccccCcccchhh
Q 020914          202 KYAPIVNVDKAFE-------SPHTHGSCFQFLRQY--ADDSFSSAACLVAPKS-IISYPQVWRGQGLRKWRHSQQDGFFV  271 (320)
Q Consensus       202 ~~~~a~~~~~~~~-------~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~  271 (320)
                      .+++++.+.+...       ....+|.++...+++  |+..|++++.+.+... .+....++..+|.++..+|+++++..
T Consensus       285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  364 (411)
T 4a1s_A          285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK  364 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            9999999876541       122378888888888  9999999998754332 22335689999999999999999887


Q ss_pred             hccc
Q 020914          272 QFES  275 (320)
Q Consensus       272 ~~~~  275 (320)
                      .+++
T Consensus       365 ~~~~  368 (411)
T 4a1s_A          365 YAEQ  368 (411)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7665

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.91  E-value=5.2e-24  Score=192.43  Aligned_cols=264  Identities=13%  Similarity=0.018  Sum_probs=177.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ---------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN----   71 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----   71 (320)
                      ..+..+..+|.++..+|++++|+++|++|+++         +|....+|.++|.+|..+|++++|+.++++++++.    
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34566788999999999999999999999986         67778899999999999999999999999999873    


Q ss_pred             ----CCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHH
Q 020914           72 ----PQWEKGYFRKGCILEAM--EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK---RAQEVENIRSNVDMVQ  142 (320)
Q Consensus        72 ----p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~  142 (320)
                          ++.+.++..+|.++...  ++|++|+++|+++++++|+++.++..++.+....+.+.   +|++.  +...+...+
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~--~~~al~l~p  206 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDP--LRQAIRLNP  206 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHH--HHHHHHHCS
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHH--HHHHhhcCC
Confidence                45688999999888765  47999999999999999999999999998877666553   34333  222332222


Q ss_pred             hHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-
Q 020914          143 HLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-  218 (320)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-  218 (320)
                      ........+...++......+.+..+...+++++...+.......   .+|...|++++|+..+++++++.|.....+. 
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  286 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ  286 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence            222222222222223333334444455555554443322211111   1667777777777777777777776543333 


Q ss_pred             hhhHHHHh-------------------hHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914          219 HGSCFQFL-------------------RQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES  275 (320)
Q Consensus       219 ~g~~~~~~-------------------~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  275 (320)
                      +|.+|...                   +.+  |+..|++++.+     +|..+.+|.++|.++..+|+++++...+++
T Consensus       287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k  359 (472)
T 4g1t_A          287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA-----NDNLFRVCSILASLHALADQYEEAEYYFQK  359 (472)
T ss_dssp             HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-----CTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-----CCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence            55554321                   123  67777777776     556666677777777777777777665554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.91  E-value=3.8e-23  Score=168.89  Aligned_cols=201  Identities=15%  Similarity=0.113  Sum_probs=158.2

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP-SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      .|.++..++.+|.+++..|++++|+..|+++++++| .+..+++++|.++..+|++++|+..|+++++++|+++.+++.+
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   82 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK   82 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            455679999999999999999999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHH--HHHHh
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSA-------EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF--KSEMS  152 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~  152 (320)
                      |.+|..+|++++|+..|+++++++|+++       .++..+|.++...|++++|+..+.  ..+..    .+.  ....+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~--~al~~----~p~~~~~~~~  156 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK--HATDV----TSKKWKTDAL  156 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHTTS----SCHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH--HHHhc----CCCcccHHHH
Confidence            9999999999999999999999999999       669999999999999999987753  22222    222  34455


Q ss_pred             hhhcchhhhhhHHHHHHHHHHHHHHhHhhccc-cChhHHhhhcChhHHHHhhhhhhccccCcC
Q 020914          153 EKYGAEECWKHVFSFVVETMETAVKSWHETSK-VDAKVYFLLDKEKTDTEKYAPIVNVDKAFE  214 (320)
Q Consensus       153 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~-~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~  214 (320)
                      ..+|.++...|..     .++++......... .........+.+++|+..++++++++|...
T Consensus       157 ~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  214 (228)
T 4i17_A          157 YSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRT  214 (228)
T ss_dssp             HHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Confidence            5556655544432     11222111110000 000144566778999999999999998753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.5e-24  Score=197.50  Aligned_cols=263  Identities=13%  Similarity=0.110  Sum_probs=216.3

Q ss_pred             hHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----c--C-------CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFK---AGNYLKAAALYTQAIK-----Q--D-------PSNPTLFSNRAAAFLHLVKLNKALADAET   66 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   66 (320)
                      |.++..++.+|.+++.   .|++++|+..|+++++     +  +       |.++.++..+|.++...|++++|+..|++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  262 (514)
T 2gw1_A          183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK  262 (514)
T ss_dssp             SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5678899999999887   8999999999999999     6  4       44578899999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHH
Q 020914           67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE  146 (320)
Q Consensus        67 al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  146 (320)
                      +++.+|+ +.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+....  ..+...    +
T Consensus       263 ~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~----~  335 (514)
T 2gw1_A          263 AIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD--KAKELD----P  335 (514)
T ss_dssp             HHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH--HHHHTC----S
T ss_pred             HHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHhC----h
Confidence            9999999 99999999999999999999999999999999999999999999999999999977643  222211    1


Q ss_pred             HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCC------cc
Q 020914          147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFES------PH  217 (320)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~------~~  217 (320)
                      ....+...++.++...|.+..+...+++++...+.......   .++...|++++|+..+++++.+.|....      .+
T Consensus       336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  415 (514)
T 2gw1_A          336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL  415 (514)
T ss_dssp             SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence            22335555677777777777788877777765443322211   1888899999999999999999887643      33


Q ss_pred             -chhhHHHH---hhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914          218 -THGSCFQF---LRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL  278 (320)
Q Consensus       218 -~~g~~~~~---~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  278 (320)
                       .+|.++..   .+++  |+..|++++..     .|..+.+|..+|.++..+|+++++...+++...
T Consensus       416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  477 (514)
T 2gw1_A          416 VGKATLLTRNPTVENFIEATNLLEKASKL-----DPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD  477 (514)
T ss_dssp             HHHHHHHHTSCCTTHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhcCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence             38888888   9999  99999999988     677789999999999999999998877766443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.91  E-value=1e-23  Score=173.21  Aligned_cols=215  Identities=16%  Similarity=0.170  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      ..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|++..++..+|.+
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhH
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV  164 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (320)
                      +..+|++++|+..|+++++.+|.+..++..+|.++...|++++|+....  ..+...+.    ...+..           
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~--~~~~~~~~----~~~~~~-----------  163 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ--RAVELNEN----DTEARF-----------  163 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHH--HHHHHCTT----CHHHHH-----------
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH--HHHHhCCc----cHHHHH-----------
Confidence            9999999999999999999999999999999999999999999976642  11111100    000000           


Q ss_pred             HHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchh
Q 020914          165 FSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLV  241 (320)
Q Consensus       165 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~  241 (320)
                                          ....++...|++++|+..+++++...|.....+. +|.++...+++  |+..|++++++ 
T Consensus       164 --------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-  222 (243)
T 2q7f_A          164 --------------------QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI-  222 (243)
T ss_dssp             --------------------HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-
T ss_pred             --------------------HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-
Confidence                                0012667788889999999998888877644444 88888889998  99999999998 


Q ss_pred             CCCCCCChhHhhhccccccc
Q 020914          242 APKSIISYPQVWRGQGLRKW  261 (320)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~  261 (320)
                          .|.++.++..++....
T Consensus       223 ----~p~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          223 ----QPDHMLALHAKKLLGH  238 (243)
T ss_dssp             ----CTTCHHHHHHHTC---
T ss_pred             ----CcchHHHHHHHHHHHh
Confidence                7778888887776443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.91  E-value=7.6e-24  Score=185.87  Aligned_cols=205  Identities=10%  Similarity=0.033  Sum_probs=161.1

Q ss_pred             chHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      +|.++.+|+.+|.++...|+ +++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|+++|+++|++..+|+++
T Consensus       127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~l  206 (382)
T 2h6f_A          127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR  206 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHH
Confidence            68889999999999999997 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHHHHHHHH---HHHHhhhhHHHHhHHHHHHHHhhhhcc
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL-AKDKKRAQE---VENIRSNVDMVQHLDEFKSEMSEKYGA  157 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (320)
                      |.++..+|++++|+.+|+++++++|++..+|..+|.++.. .|..++|+.   +..+...+.    +.+....++..++.
T Consensus       207 g~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~----l~P~~~~a~~~l~~  282 (382)
T 2h6f_A          207 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK----LVPHNESAWNYLKG  282 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH----HSTTCHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH----HCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999988 444466631   111223333    33333444555555


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhc--------C-hhHHHHhhhhh-hccccCcCCcc
Q 020914          158 EECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLD--------K-EKTDTEKYAPI-VNVDKAFESPH  217 (320)
Q Consensus       158 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg--------~-~~~A~~~~~~a-~~~~~~~~~~~  217 (320)
                      ++...|.     ..++++++.+.+. ...|.          +|..+|        + .++|++.|+++ ++++|.....|
T Consensus       283 ll~~~g~-----~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w  356 (382)
T 2h6f_A          283 ILQDRGL-----SKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYW  356 (382)
T ss_dssp             HHTTTCG-----GGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             HHHccCc-----cchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence            5554441     1233344444333 34443          566654        2 58999999999 99999754333

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.91  E-value=1.1e-22  Score=160.34  Aligned_cols=128  Identities=19%  Similarity=0.256  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      +++..|+++|.++...|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..+++++..+|+++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +...++++.|+..+.++++++|++..++..+|.++...|++++|++.+
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  130 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAY  130 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHH
Confidence            999999999999999999999999999999999999999999997764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.90  E-value=8.4e-24  Score=184.82  Aligned_cols=230  Identities=10%  Similarity=0.050  Sum_probs=177.5

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH-
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK-   81 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l-   81 (320)
                      .|.++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..|+++++++|++..++..+ 
T Consensus        95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  174 (365)
T 4eqf_A           95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK  174 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----
T ss_pred             CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc
Confidence            4778899999999999999999999999999999999999999999999999999999999999999999877666655 


Q ss_pred             ---------HHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHH
Q 020914           82 ---------GCILEAMEQYDDALSAFQTALQYNPQ--SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE  150 (320)
Q Consensus        82 ---------g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  150 (320)
                               |.++...|++++|+..|+++++++|+  ++.++..+|.++...|++++|+....  ..+..    .+....
T Consensus       175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~~----~p~~~~  248 (365)
T 4eqf_A          175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN--AALTV----RPEDYS  248 (365)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH--HHHHH----CTTCHH
T ss_pred             cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHh----CCCCHH
Confidence                     99999999999999999999999999  99999999999999999999987743  22222    223345


Q ss_pred             HhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCC------------
Q 020914          151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFES------------  215 (320)
Q Consensus       151 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~------------  215 (320)
                      ++..+|.++...|.+..|+..+++++...+......-   .++..+|++++|+..|++++++.|....            
T Consensus       249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  328 (365)
T 4eqf_A          249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGN  328 (365)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHH
Confidence            6666777777777777777777777665443221111   1888999999999999999999887422            


Q ss_pred             ccc-hhhHHHHhhHH--HHHHHHHHh
Q 020914          216 PHT-HGSCFQFLRQY--ADDSFSSAA  238 (320)
Q Consensus       216 ~~~-~g~~~~~~~~~--A~~~~~~al  238 (320)
                      .+. +|.++..+++.  +....++++
T Consensus       329 ~~~~l~~~~~~~g~~~~a~~~~~~~l  354 (365)
T 4eqf_A          329 IWAALRIALSLMDQPELFQAANLGDL  354 (365)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence            111 55555555555  555544443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.90  E-value=1.8e-23  Score=179.37  Aligned_cols=273  Identities=15%  Similarity=0.159  Sum_probs=218.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCC
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISL------NPQ   73 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~   73 (320)
                      +.+...++..|..++..|++++|+..|+++++.+|.+    ..++..+|.++...|++++|+..+++++.+      .|.
T Consensus         2 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (338)
T 3ro2_A            2 SASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   81 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence            4567889999999999999999999999999999998    478999999999999999999999999988      455


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH--------------------HHH
Q 020914           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKD--------------------KKR  127 (320)
Q Consensus        74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~  127 (320)
                      ...++..+|.++..+|++++|+..|++++++.|..      ..++..+|.++...|+                    +++
T Consensus        82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (338)
T 3ro2_A           82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA  161 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence            67899999999999999999999999999986654      3489999999999999                    888


Q ss_pred             HHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------hhHHhhhcChhH
Q 020914          128 AQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEKT  198 (320)
Q Consensus       128 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------~~~~~~lg~~~~  198 (320)
                      |+........+............+...+|.++...|.+..+...+++++...+......         ..++...|++++
T Consensus       162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  241 (338)
T 3ro2_A          162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  241 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence            87765322222111222344556777788888888999999999999888776633211         118889999999


Q ss_pred             HHHhhhhhhccccCcCC-------ccchhhHHHHhhHH--HHHHHHHHhchhCCCC-CCChhHhhhcccccccccCcccc
Q 020914          199 DTEKYAPIVNVDKAFES-------PHTHGSCFQFLRQY--ADDSFSSAACLVAPKS-IISYPQVWRGQGLRKWRHSQQDG  268 (320)
Q Consensus       199 A~~~~~~a~~~~~~~~~-------~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~  268 (320)
                      |+..+++++.+.+....       ...+|.++...+++  |+..|++++.+.+... .+....++..+|.++..+|++++
T Consensus       242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  321 (338)
T 3ro2_A          242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ  321 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            99999999988665421       22377788888888  9999999998754332 22335689999999999999999


Q ss_pred             hhhhcccc
Q 020914          269 FFVQFESP  276 (320)
Q Consensus       269 ~~~~~~~~  276 (320)
                      +...+++.
T Consensus       322 A~~~~~~a  329 (338)
T 3ro2_A          322 AMHFAEKH  329 (338)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88766553

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.90  E-value=1.4e-22  Score=163.41  Aligned_cols=124  Identities=15%  Similarity=0.107  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSN----------------RAAAFLHLVKLNKALADAETTI   68 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~al   68 (320)
                      .+++.++.+|..++..|++++|+..|+++++.+|+++.+++.                +|.+|..+|++++|+..|++++
T Consensus         2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   81 (208)
T 3urz_A            2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL   81 (208)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            357889999999999999999999999999999999999999                9999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        69 ~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      +++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++..+|.++...+..+.+
T Consensus        82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~  141 (208)
T 3urz_A           82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK  141 (208)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHH
Confidence            999999999999999999999999999999999999999999999999998777655443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.90  E-value=5.2e-23  Score=172.23  Aligned_cols=220  Identities=15%  Similarity=0.108  Sum_probs=128.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |.++..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  119 (275)
T 1xnf_A           40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  119 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence            55666677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (320)
                      ++..+|++++|+..|+++++++|++......++.. ...|++++|+...                               
T Consensus       120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~-------------------------------  167 (275)
T 1xnf_A          120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVL-------------------------------  167 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHH-------------------------------
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHH-------------------------------
Confidence            77777777777777777777777666555444433 3445555554442                               


Q ss_pred             HHHHHHHHHHHHHHhHhhccccCh--hHHhhhcChhHHHHhhhhhhccccCc-----CCccchhhHHHHhhHH--HHHHH
Q 020914          164 VFSFVVETMETAVKSWHETSKVDA--KVYFLLDKEKTDTEKYAPIVNVDKAF-----ESPHTHGSCFQFLRQY--ADDSF  234 (320)
Q Consensus       164 ~~~~a~~~~~~a~~~~~~~~~~~~--~~~~~lg~~~~A~~~~~~a~~~~~~~-----~~~~~~g~~~~~~~~~--A~~~~  234 (320)
                               .+++...+.......  ..+...++.++|+..+++++...|..     .....+|.++...|++  |+..|
T Consensus       168 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  238 (275)
T 1xnf_A          168 ---------KQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF  238 (275)
T ss_dssp             ---------HHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------HHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence                     222221111100000  03344455566666666666655532     1112266666667776  77777


Q ss_pred             HHHhchhCCCCCCChhHhhhcccccccccCcccchhhh
Q 020914          235 SSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQ  272 (320)
Q Consensus       235 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  272 (320)
                      ++++.+     +|..   |...+.++..+|++++++..
T Consensus       239 ~~al~~-----~p~~---~~~~~~~~~~l~~~~~a~~~  268 (275)
T 1xnf_A          239 KLAVAN-----NVHN---FVEHRYALLELSLLGQDQDD  268 (275)
T ss_dssp             HHHHTT-----CCTT---CHHHHHHHHHHHHHHHC---
T ss_pred             HHHHhC-----Cchh---HHHHHHHHHHHHHHHhhHHH
Confidence            777766     4433   33334566666666666544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.90  E-value=1.7e-23  Score=184.73  Aligned_cols=271  Identities=16%  Similarity=0.162  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCC
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISL------NPQW   74 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~   74 (320)
                      ..+..++.+|..++..|++++|+.+|+++++..|.+    +.++..+|.++...|++++|+..+++++.+      .|..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            456789999999999999999999999999999998    468999999999999999999999999987      3456


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH--------------------HHHH
Q 020914           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKD--------------------KKRA  128 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~A  128 (320)
                      ..++..+|.++..+|++++|+..|++++++.|..      ..++..+|.++...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            7899999999999999999999999999997754      4589999999999999                    9998


Q ss_pred             HHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------hhHHhhhcChhHH
Q 020914          129 QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEKTD  199 (320)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------~~~~~~lg~~~~A  199 (320)
                      +........+.......+....++..+|.++...|.+..+...+++++...++.....         ..++...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            8775322222111222344566777888888889999999999999988777643211         1188899999999


Q ss_pred             HHhhhhhhccccCcC-------CccchhhHHHHhhHH--HHHHHHHHhchhCCCC-CCChhHhhhcccccccccCcccch
Q 020914          200 TEKYAPIVNVDKAFE-------SPHTHGSCFQFLRQY--ADDSFSSAACLVAPKS-IISYPQVWRGQGLRKWRHSQQDGF  269 (320)
Q Consensus       200 ~~~~~~a~~~~~~~~-------~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~  269 (320)
                      +..+++++.+.+...       ....+|.++...|++  |+..|++++.+.+... .+..+.++.++|.++..+|+++++
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            999999998876542       122377788888888  9999999998854433 233467899999999999999998


Q ss_pred             hhhccc
Q 020914          270 FVQFES  275 (320)
Q Consensus       270 ~~~~~~  275 (320)
                      ...+++
T Consensus       327 ~~~~~~  332 (406)
T 3sf4_A          327 MHFAEK  332 (406)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776655

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=6.6e-23  Score=187.87  Aligned_cols=227  Identities=15%  Similarity=0.166  Sum_probs=189.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   86 (320)
                      +.++..+|.++...|++++|+..|+++++.+|+ +.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            567999999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHH
Q 020914           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS  166 (320)
Q Consensus        87 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (320)
                      ..|++++|+..|+++++++|++..++..+|.++...|++++|+....  ..+..    .+....+...+|.++...|.+.
T Consensus       322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~~~~~----~~~~~~~~~~l~~~~~~~g~~~  395 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN--ETKLK----FPTLPEVPTFFAEILTDRGDFD  395 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH--HHHHH----CTTCTHHHHHHHHHHHHTTCHH
T ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHh----CCCChHHHHHHHHHHHHhCCHH
Confidence            99999999999999999999999999999999999999999987743  22222    2223345556677777777777


Q ss_pred             HHHHHHHHHHHhHhhccccCh---------hHHhhh----------cChhHHHHhhhhhhccccCcCCccc-hhhHHHHh
Q 020914          167 FVVETMETAVKSWHETSKVDA---------KVYFLL----------DKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFL  226 (320)
Q Consensus       167 ~a~~~~~~a~~~~~~~~~~~~---------~~~~~l----------g~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~  226 (320)
                      .|...+++++...+.......         .++...          |++++|+..++++++++|.....+. +|.++...
T Consensus       396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  475 (537)
T 3fp2_A          396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM  475 (537)
T ss_dssp             HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            777777777776655433222         155555          8888888888888888877654444 78888888


Q ss_pred             hHH--HHHHHHHHhch
Q 020914          227 RQY--ADDSFSSAACL  240 (320)
Q Consensus       227 ~~~--A~~~~~~al~~  240 (320)
                      |++  |++.|++++++
T Consensus       476 g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          476 EKIDEAIELFEDSAIL  491 (537)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHh
Confidence            888  88888888877

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.90  E-value=1.7e-22  Score=182.44  Aligned_cols=274  Identities=13%  Similarity=0.062  Sum_probs=189.5

Q ss_pred             hHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914            4 EAEEMSLKDKGNEFFKA--GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH---LVKLNKALADAETTISLNPQWEKGY   78 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l~p~~~~~~   78 (320)
                      +..+..+..+|..+...  ++|++|+.+|+++++++|+++.++..+|.++..   .+++++|++.|+++++++|+++.++
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~  212 (472)
T 4g1t_A          133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK  212 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHH
T ss_pred             hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHH
Confidence            34567788888877765  579999999999999999999999999998665   4677899999999999999999999


Q ss_pred             HHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhh
Q 020914           79 FRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEK  154 (320)
Q Consensus        79 ~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (320)
                      ..+|.++..    .|++++|+++|++++.++|++..++..+|.++...|++++|+....  ..+...+.    ...+...
T Consensus       213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~--~al~~~p~----~~~~~~~  286 (472)
T 4g1t_A          213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK--KALEYIPN----NAYLHCQ  286 (472)
T ss_dssp             HHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHSTT----CHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH--HHHHhCCC----hHHHHHH
Confidence            999877665    4678899999999999999999999999999999999999987743  33332222    1122222


Q ss_pred             hcchh------------hhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccC
Q 020914          155 YGAEE------------CWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKA  212 (320)
Q Consensus       155 ~~~~~------------~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~  212 (320)
                      +|.++            ...+........+++|+..+.++..++|.          ++..+|++++|+..|++++++.+.
T Consensus       287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~  366 (472)
T 4g1t_A          287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT  366 (472)
T ss_dssp             HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            22222            22233445566667777777777666664          788889999999999999988765


Q ss_pred             cCCc----cchhhH-HHHhhHH--HHHHHHHHhchhCCC-------------------CCCChhHhhhcccccccccCcc
Q 020914          213 FESP----HTHGSC-FQFLRQY--ADDSFSSAACLVAPK-------------------SIISYPQVWRGQGLRKWRHSQQ  266 (320)
Q Consensus       213 ~~~~----~~~g~~-~~~~~~~--A~~~~~~al~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~  266 (320)
                      ....    ..+|.+ +...+++  |+..|++|+++.|..                   .+|..+.+|.++|.++..+|++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~  446 (472)
T 4g1t_A          367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKM  446 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            4221    113333 2344556  888888888764432                   1567788999999999999999


Q ss_pred             cchhhhccccccccccc
Q 020914          267 DGFFVQFESPLLRKLWF  283 (320)
Q Consensus       267 ~~~~~~~~~~~~~~~~~  283 (320)
                      +++...+++++...+..
T Consensus       447 ~~A~~~y~kALe~~~~~  463 (472)
T 4g1t_A          447 QQADEDSERGLESGSLI  463 (472)
T ss_dssp             C----------------
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            99999998877655553

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.90  E-value=2.2e-23  Score=188.85  Aligned_cols=119  Identities=13%  Similarity=0.134  Sum_probs=95.4

Q ss_pred             chHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNY-LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      .|.++..++.+|.++...|++ ++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|+ ..++..+
T Consensus        98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~l  176 (474)
T 4abn_A           98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNL  176 (474)
T ss_dssp             CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHH
Confidence            345677788888888888888 88888888888888888888888888888888888888888888888887 6788888


Q ss_pred             HHHHHHc---------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914           82 GCILEAM---------EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (320)
Q Consensus        82 g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  122 (320)
                      |.++..+         |++++|+..|+++++++|++..+|..+|.++...
T Consensus       177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  226 (474)
T 4abn_A          177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL  226 (474)
T ss_dssp             HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            8888888         8888888888888888888888888887777665

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.89  E-value=1.6e-22  Score=164.15  Aligned_cols=164  Identities=13%  Similarity=0.114  Sum_probs=134.4

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHhcC
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL-----------VKLNKALADAETTISLN   71 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~l~   71 (320)
                      .|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+           |++++|+..|+++++++
T Consensus        35 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  114 (217)
T 2pl2_A           35 NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN  114 (217)
T ss_dssp             SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence            6888999999999999999999999999999999999999999999999999           99999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHH
Q 020914           72 PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEM  151 (320)
Q Consensus        72 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  151 (320)
                      |+++.+++.+|.++..+|++++|+..|+++++++ +++.++..+|.++...|++++|+..+.  ..+..    .+....+
T Consensus       115 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~----~P~~~~~  187 (217)
T 2pl2_A          115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA--KALEQ----APKDLDL  187 (217)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH--HHHHH----STTCHHH
T ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH--HHHHh----CCCChHH
Confidence            9999999999999999999999999999999999 999999999999999999999976642  22222    2223334


Q ss_pred             hhhhcchhhhhhHHHHHHHHHH
Q 020914          152 SEKYGAEECWKHVFSFVVETME  173 (320)
Q Consensus       152 ~~~~~~~~~~~~~~~~a~~~~~  173 (320)
                      ...++.++...|.+..|...++
T Consensus       188 ~~~la~~~~~~g~~~~A~~~~~  209 (217)
T 2pl2_A          188 RVRYASALLLKGKAEEAARAAA  209 (217)
T ss_dssp             HHHHHHHHTC------------
T ss_pred             HHHHHHHHHHccCHHHHHHHHH
Confidence            4444554444444444444433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.89  E-value=6.9e-22  Score=163.48  Aligned_cols=210  Identities=14%  Similarity=0.110  Sum_probs=170.7

Q ss_pred             chHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            3 AEAE-EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         3 ~p~~-a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      +|.. +..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|++..++..+
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  111 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY  111 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence            4555 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchh
Q 020914           82 GCILEAMEQYDDALSAFQTALQ--YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE  159 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (320)
                      |.++...|++++|++.|+++++  ..|.+..++..+|.++...|++++|+....  ..+...+.    ...+...+    
T Consensus       112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~~~~~~~~----~~~~~~~l----  181 (252)
T 2ho1_A          112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFE--KSLRLNRN----QPSVALEM----  181 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCSC----CHHHHHHH----
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCcc----cHHHHHHH----
Confidence            9999999999999999999999  889999999999999999999999976642  11111100    00000001    


Q ss_pred             hhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHH
Q 020914          160 CWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSS  236 (320)
Q Consensus       160 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~  236 (320)
                                                 ..++..+|++++|+..++++++..|.....+. .+.++...+++  |...+++
T Consensus       182 ---------------------------a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  234 (252)
T 2ho1_A          182 ---------------------------ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ  234 (252)
T ss_dssp             ---------------------------HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---------------------------HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence                                       12566778888888888888888776543333 67777778887  8889999


Q ss_pred             HhchhCCCCCCChhHhhh
Q 020914          237 AACLVAPKSIISYPQVWR  254 (320)
Q Consensus       237 al~~~~~~~~~~~~~~~~  254 (320)
                      ++++     .|..+.++.
T Consensus       235 ~~~~-----~p~~~~~~~  247 (252)
T 2ho1_A          235 LKRL-----YPGSLEYQE  247 (252)
T ss_dssp             HHHH-----CTTSHHHHH
T ss_pred             HHHH-----CCCCHHHHH
Confidence            8887     555555443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.89  E-value=3.6e-23  Score=177.35  Aligned_cols=233  Identities=14%  Similarity=0.106  Sum_probs=188.3

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH-
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK-   81 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l-   81 (320)
                      .|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++...+..+ 
T Consensus        51 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  130 (327)
T 3cv0_A           51 APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL  130 (327)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-----
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHh
Confidence            4678889999999999999999999999999999999999999999999999999999999999999999998888887 


Q ss_pred             -------------HH-HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHH
Q 020914           82 -------------GC-ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF  147 (320)
Q Consensus        82 -------------g~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  147 (320)
                                   |. ++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+....  ..+..    .+.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--~~~~~----~~~  204 (327)
T 3cv0_A          131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLR--RAVEL----RPD  204 (327)
T ss_dssp             ---------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHH----CTT
T ss_pred             HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHH--HHHHh----CCC
Confidence                         77 78999999999999999999999999999999999999999999987743  22222    222


Q ss_pred             HHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccC------------
Q 020914          148 KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKA------------  212 (320)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~------------  212 (320)
                      ...+...+|.++...|.+..|...+++++...+......-   .++..+|++++|+..+++++.+.|.            
T Consensus       205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  284 (327)
T 3cv0_A          205 DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA  284 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhc
Confidence            3445556677777777777777777777665433211111   1888999999999999999999888            


Q ss_pred             cCCccc-hhhHHHHhhHH--HHHHHHHHhchh
Q 020914          213 FESPHT-HGSCFQFLRQY--ADDSFSSAACLV  241 (320)
Q Consensus       213 ~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~  241 (320)
                      ....+. +|.++..++++  |...+++++...
T Consensus       285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  316 (327)
T 3cv0_A          285 TRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF  316 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence            332333 78888888888  999998888763

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.88  E-value=4.1e-22  Score=157.13  Aligned_cols=177  Identities=12%  Similarity=0.105  Sum_probs=143.4

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914           39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (320)
Q Consensus        39 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  118 (320)
                      +++.+|+++|.+|..+|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..+++++...|++..++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhH
Q 020914          119 SQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKT  198 (320)
Q Consensus       119 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~  198 (320)
                      +...++++.+.....  ......    +....+...                               ...++..+|++++
T Consensus        83 ~~~~~~~~~a~~~~~--~a~~~~----~~~~~~~~~-------------------------------lg~~~~~~g~~~~  125 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQ--RAIALN----TVYADAYYK-------------------------------LGLVYDSMGEHDK  125 (184)
T ss_dssp             HHHTTCHHHHHHHHH--HHHHHC----TTCHHHHHH-------------------------------HHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHH--HHHHhC----ccchHHHHH-------------------------------HHHHHHHhCCchh
Confidence            998888888865532  111110    000000000                               0127778899999


Q ss_pred             HHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhccccc
Q 020914          199 DTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLR  259 (320)
Q Consensus       199 A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  259 (320)
                      |++.|+++++++|.....+. +|.++..+|++  |++.|++|+++     +|..  +++++|.+
T Consensus       126 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~--a~~~lali  182 (184)
T 3vtx_A          126 AIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK-----EEKK--AKYELALV  182 (184)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----THHH--HHHCSCCS
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----CccC--HHHHHHhh
Confidence            99999999999998765555 89999999999  99999999988     5544  45555543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.88  E-value=2.9e-21  Score=162.01  Aligned_cols=236  Identities=15%  Similarity=0.113  Sum_probs=178.3

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKG   77 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~   77 (320)
                      +.|.++.+++.+|.++...|++++|+.+|+++++  |.++.+++.+|.+|..    .+++++|+..|+++++++  ++.+
T Consensus         1 a~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a   76 (273)
T 1ouv_A            1 MAEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG   76 (273)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence            3688899999999999999999999999999999  7789999999999999    999999999999999985  8999


Q ss_pred             HHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHhHHHHHH
Q 020914           78 YFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVENIRSNVDMVQHLDEFKS  149 (320)
Q Consensus        78 ~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~  149 (320)
                      ++.+|.+|..    .+++++|+..|+++++.  +++.++..+|.++..    .+++++|+..+..  .+...      ..
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~--a~~~~------~~  146 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK--ACDLN------DG  146 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH--HHHTT------CH
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHH--HHhcC------cH
Confidence            9999999999    99999999999999998  489999999999999    8999999877532  22211      22


Q ss_pred             HHhhhhcchhhh----hhHHHHHHHHHHHHHHhHhh-ccccChhHHhh----hcChhHHHHhhhhhhccccCcCCccchh
Q 020914          150 EMSEKYGAEECW----KHVFSFVVETMETAVKSWHE-TSKVDAKVYFL----LDKEKTDTEKYAPIVNVDKAFESPHTHG  220 (320)
Q Consensus       150 ~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~-~~~~~~~~~~~----lg~~~~A~~~~~~a~~~~~~~~~~~~~g  220 (320)
                      .....+|.++..    .+.+..+...++++++.-.. +......+|..    .+++++|+..++++++.++. .....+|
T Consensus       147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~-~a~~~l~  225 (273)
T 1ouv_A          147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENG-GGCFNLG  225 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCH-HHHHHHH
Confidence            334445555554    55666666666666543110 00000016666    78888888888888887662 2223377


Q ss_pred             hHHHH----hhHH--HHHHHHHHhchhCCCCCCChhHhhhccc
Q 020914          221 SCFQF----LRQY--ADDSFSSAACLVAPKSIISYPQVWRGQG  257 (320)
Q Consensus       221 ~~~~~----~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~  257 (320)
                      .++..    .+++  |+.+|++|+++     .|..+..++...
T Consensus       226 ~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~l~~~  263 (273)
T 1ouv_A          226 AMQYNGEGVTRNEKQAIENFKKGCKL-----GAKGACDILKQL  263 (273)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHH-----TCHHHHHHHHTC
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHHc-----CCHHHHHHHHHH
Confidence            77776    6677  88888888887     555555555433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.88  E-value=5.1e-21  Score=154.95  Aligned_cols=210  Identities=13%  Similarity=0.056  Sum_probs=165.2

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++..++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   83 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG   83 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc-cCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchh
Q 020914           83 CILEAM-EQYDDALSAFQTALQ--YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE  159 (320)
Q Consensus        83 ~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (320)
                      .++... |++++|+..|+++++  .+|.+..++..+|.++...|++++|+....  ..+...+.    ...+...++   
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~~~----~~~~~~~la---  154 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK--RSLAAQPQ----FPPAFKELA---  154 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHSTT----CHHHHHHHH---
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCC----CchHHHHHH---
Confidence            999999 999999999999999  677778999999999999999999976642  11111110    111111111   


Q ss_pred             hhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhcccc-CcCCccc-hhhHHHHhhHH--HHHHHH
Q 020914          160 CWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDK-AFESPHT-HGSCFQFLRQY--ADDSFS  235 (320)
Q Consensus       160 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~-~~~~~~~-~g~~~~~~~~~--A~~~~~  235 (320)
                                                  .++...|++++|+..+++++++.| .....+. .+.++...+.+  |...++
T Consensus       155 ----------------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  206 (225)
T 2vq2_A          155 ----------------------------RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA  206 (225)
T ss_dssp             ----------------------------HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ----------------------------HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence                                        255667777777777777777776 5433333 44445556666  666666


Q ss_pred             HHhchhCCCCCCChhHhhh
Q 020914          236 SAACLVAPKSIISYPQVWR  254 (320)
Q Consensus       236 ~al~~~~~~~~~~~~~~~~  254 (320)
                      .++..     .|..+.++.
T Consensus       207 ~~~~~-----~p~~~~~~~  220 (225)
T 2vq2_A          207 QLQAN-----FPYSEELQT  220 (225)
T ss_dssp             HHHHH-----CTTCHHHHH
T ss_pred             HHHHh-----CCCCHHHHH
Confidence            66656     555555544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.87  E-value=6.5e-22  Score=151.01  Aligned_cols=119  Identities=13%  Similarity=0.098  Sum_probs=84.0

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++..++.+|.+|+..|+|++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|+++.+++.+|
T Consensus        27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  106 (150)
T 4ga2_A           27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIA  106 (150)
T ss_dssp             HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45666667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHccCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSA-FQTALQYNPQSAEVSRKIKRVSQL  121 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~  121 (320)
                      .+|..+|++++|++. ++++++++|+++.++...+.++..
T Consensus       107 ~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A          107 ELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             HHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            777777777666654 367777777777777666665543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.87  E-value=1.9e-21  Score=148.10  Aligned_cols=107  Identities=13%  Similarity=0.088  Sum_probs=104.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      +|+++.+++.+|.+++..|++++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+++|
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg  111 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG  111 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~  109 (320)
                      .+|..+|++++|+.+|++++++.|+.+
T Consensus       112 ~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          112 QCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999865

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.86  E-value=5.4e-23  Score=172.08  Aligned_cols=228  Identities=11%  Similarity=-0.046  Sum_probs=178.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914           13 KGNEFFKAGNYLKAAALYTQAIKQD----PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (320)
Q Consensus        13 ~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   88 (320)
                      ++......|++++|+..|+++++..    |.++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~   90 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA   90 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence            3344456789999999999999984    456899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHH
Q 020914           89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV  168 (320)
Q Consensus        89 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  168 (320)
                      |++++|+..|+++++++|++..++..+|.++...|++++|+....  ..+...+....           ...        
T Consensus        91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~~~~~~-----------~~~--------  149 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL--AFYQDDPNDPF-----------RSL--------  149 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCTTCHH-----------HHH--------
T ss_pred             cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH--HHHHhCCCChH-----------HHH--------
Confidence            999999999999999999999999999999999999999976642  11111111000           000        


Q ss_pred             HHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCC
Q 020914          169 VETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSI  246 (320)
Q Consensus       169 ~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~  246 (320)
                                       ........|++++|+..+++++...|.....+..+.++...+.+  |+..+++++...+. ..
T Consensus       150 -----------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~  211 (275)
T 1xnf_A          150 -----------------WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS-LA  211 (275)
T ss_dssp             -----------------HHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHH-HH
T ss_pred             -----------------HHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccc-cc
Confidence                             00122456889999999999888877765544444444444445  99999999977322 12


Q ss_pred             CChhHhhhcccccccccCcccchhhhccccccc
Q 020914          247 ISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLR  279 (320)
Q Consensus       247 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  279 (320)
                      |..+.+|..+|.++..+|+++++...++.....
T Consensus       212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            234788999999999999999998777765443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.86  E-value=2.6e-20  Score=155.22  Aligned_cols=211  Identities=11%  Similarity=0.106  Sum_probs=156.1

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EK   76 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~   76 (320)
                      .|.++..++.+|..++..|+|++|+..|+++++.+|.+   +.+++.+|.+|..+|++++|+..|+++++++|++   +.
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            46678999999999999999999999999999999999   8999999999999999999999999999998854   67


Q ss_pred             HHHHHHHHHHH--------ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHH
Q 020914           77 GYFRKGCILEA--------MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK  148 (320)
Q Consensus        77 ~~~~lg~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  148 (320)
                      +++.+|.++..        +|++++|+..|+++++.+|++..+...+..+....+....+                    
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~--------------------  150 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARK--------------------  150 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHH--------------------
Confidence            89999999999        99999999999999999999987765544332221111110                    


Q ss_pred             HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCC----ccchhhHHH
Q 020914          149 SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFES----PHTHGSCFQ  224 (320)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~----~~~~g~~~~  224 (320)
                         ...+|                               .+|...|++++|+..|+++++..|....    ...+|.++.
T Consensus       151 ---~~~la-------------------------------~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~  196 (261)
T 3qky_A          151 ---QYEAA-------------------------------RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI  196 (261)
T ss_dssp             ---HHHHH-------------------------------HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             ---HHHHH-------------------------------HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence               11112                               2555666777777777777766665422    122666666


Q ss_pred             Hh----------hHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccch
Q 020914          225 FL----------RQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGF  269 (320)
Q Consensus       225 ~~----------~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  269 (320)
                      .+          +++  |+..|++++...|..  +....+...++.+...++++++.
T Consensus       197 ~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          197 AYAEQSVRARQPERYRRAVELYERLLQIFPDS--PLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             HHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhcccchhhcccchHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHHHHhhhh
Confidence            55          667  888888888763322  22244555556666666665553

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.1e-21  Score=162.42  Aligned_cols=213  Identities=10%  Similarity=0.070  Sum_probs=176.6

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHH
Q 020914           39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-------AEV  111 (320)
Q Consensus        39 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~  111 (320)
                      +.+..+..+|.++...|++++|+..|+++++.+ +++.++..+|.++..+|++++|+..|+++++++|++       +.+
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            346889999999999999999999999999999 999999999999999999999999999999999987       799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh---
Q 020914          112 SRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---  188 (320)
Q Consensus       112 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---  188 (320)
                      +..+|.++...|++++|+....  ..+...+.            +..+...       +.+++|+..+.+.+...|.   
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~--~a~~~~~~------------~~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~  140 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQ--KSLTEHRT------------ADILTKL-------RNAEKELKKAEAEAYVNPEKAE  140 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH--HHHHHCCC------------HHHHHHH-------HHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHH--HHHhcCch------------hHHHHHH-------hHHHHHHHHHHHHHHcCcchHH
Confidence            9999999999999999987643  22221111            2223333       4444455555555445554   


Q ss_pred             -------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccc
Q 020914          189 -------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGL  258 (320)
Q Consensus       189 -------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~  258 (320)
                             ++...|++++|+..+++++++.|.....+. +|.++...+++  |+..|++++..     .|..+.+|..+|.
T Consensus       141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~  215 (258)
T 3uq3_A          141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFVRAYIRKAT  215 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CHHHHHHHHHHHH
Confidence                   888999999999999999999988755444 89999999999  99999999998     7777999999999


Q ss_pred             cccccCcccchhhhcccccc
Q 020914          259 RKWRHSQQDGFFVQFESPLL  278 (320)
Q Consensus       259 ~~~~l~~~~~~~~~~~~~~~  278 (320)
                      ++..+|+++++...++....
T Consensus       216 ~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          216 AQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            99999999999877766443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.86  E-value=2e-21  Score=162.49  Aligned_cols=206  Identities=7%  Similarity=0.011  Sum_probs=166.6

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY   78 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   78 (320)
                      .|.++.++..+|.++...|++++|+..++++++ .|.+    +.++..+|.++..+|++++|+..|+++++++|+++.++
T Consensus        33 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  111 (272)
T 3u4t_A           33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY  111 (272)
T ss_dssp             TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHH
Confidence            466677899999999999999999999999999 4443    45699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcch
Q 020914           79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE  158 (320)
Q Consensus        79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (320)
                      ..+|.+|..+|++++|+..|+++++++|.++.++..+|......+++++|+....  ..+...    +........+|.+
T Consensus       112 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~a~~~~----p~~~~~~~~~~~~  185 (272)
T 3u4t_A          112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV--KVLELK----PNIYIGYLWRARA  185 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHS----TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhC----ccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999944444568888877642  222222    2223444455666


Q ss_pred             hhhhhH---HHHHHHHHHHHHHhHhhccccC-----------hhHHhhhcChhHHHHhhhhhhccccCcCC
Q 020914          159 ECWKHV---FSFVVETMETAVKSWHETSKVD-----------AKVYFLLDKEKTDTEKYAPIVNVDKAFES  215 (320)
Q Consensus       159 ~~~~~~---~~~a~~~~~~a~~~~~~~~~~~-----------~~~~~~lg~~~~A~~~~~~a~~~~~~~~~  215 (320)
                      +...+.   ...+...++++++.........           ..+|...|++++|++.++++++++|....
T Consensus       186 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  256 (272)
T 3u4t_A          186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK  256 (272)
T ss_dssp             HHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHH
Confidence            666665   6667888888887764333211           11888899999999999999999998643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.86  E-value=1.1e-21  Score=184.73  Aligned_cols=168  Identities=11%  Similarity=0.187  Sum_probs=139.8

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        36 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      -.|+++.+++++|.+|..+|++++|+..|++|++++|+++.+|+++|.+|..+|++++|+++|+++++++|++..++.++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcC
Q 020914          116 KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDK  195 (320)
Q Consensus       116 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~  195 (320)
                      |.++...|++++|++.+.  +.+...+.    ....+..+                               ..++..+|+
T Consensus        84 g~~l~~~g~~~~A~~~~~--kAl~l~P~----~~~a~~~L-------------------------------g~~~~~~g~  126 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYT--RAIQINPA----FADAHSNL-------------------------------ASIHKDSGN  126 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHH--HHHHHCTT----CHHHHHHH-------------------------------HHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHH--HHHHhCCC----CHHHHHHH-------------------------------HHHHHHcCC
Confidence            999999999998866532  22211111    00000000                               126778899


Q ss_pred             hhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhch
Q 020914          196 EKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACL  240 (320)
Q Consensus       196 ~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~  240 (320)
                      +++|++.|+++++++|.....+. +|.++..++++  |.+.|++++++
T Consensus       127 ~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l  174 (723)
T 4gyw_A          127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence            99999999999999998765554 88889999998  99999999988

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.8e-20  Score=138.37  Aligned_cols=117  Identities=27%  Similarity=0.475  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |.++..+..+|..++..|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.+|+.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q 020914           84 ILEAMEQYDDALSAFQTALQYN------PQSAEVSRKIKRVSQ  120 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~  120 (320)
                      ++..+|++++|+..|+++++++      |++..++..++.+..
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            9999999999999999999999      999999888877654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.85  E-value=1.4e-21  Score=172.38  Aligned_cols=262  Identities=9%  Similarity=0.073  Sum_probs=210.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------   74 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------   74 (320)
                      +..+..+|.+++..|++++|+.+|++++.+      .|..+.++..+|.++..+|++++|+..+++++.+.|..      
T Consensus        47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  126 (406)
T 3sf4_A           47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  126 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence            678999999999999999999999999977      34457899999999999999999999999999987653      


Q ss_pred             HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           75 EKGYFRKGCILEAMEQ--------------------YDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      ..++..+|.+|...|+                    +++|+..|++++++      .|....++..+|.++...|++++|
T Consensus       127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  206 (406)
T 3sf4_A          127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA  206 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred             HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence            5589999999999999                    99999999999988      344466899999999999999999


Q ss_pred             HHHHHHhhhhHHHHh--HHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------hhHHhhhcChh
Q 020914          129 QEVENIRSNVDMVQH--LDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEK  197 (320)
Q Consensus       129 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------~~~~~~lg~~~  197 (320)
                      +....  ..+.....  .......++..+|.++...|.+..+...+++++...+......         ..++...|+++
T Consensus       207 ~~~~~--~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  284 (406)
T 3sf4_A          207 VIAHE--QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE  284 (406)
T ss_dssp             HHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHH--HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence            87753  33332222  2334455777788888889999999999999988776642111         11888999999


Q ss_pred             HHHHhhhhhhccccCcCC-------ccchhhHHHHhhHH--HHHHHHHHhchhCCCC-CCChhHhhhcccccccccCccc
Q 020914          198 TDTEKYAPIVNVDKAFES-------PHTHGSCFQFLRQY--ADDSFSSAACLVAPKS-IISYPQVWRGQGLRKWRHSQQD  267 (320)
Q Consensus       198 ~A~~~~~~a~~~~~~~~~-------~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~  267 (320)
                      +|+..+++++++.+....       ...+|.++...|++  |+..|++++.+.+... .+....++..+|.++..+|+..
T Consensus       285 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          285 KAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            999999999988655421       22378888888888  9999999998854433 3345778899999999888876


Q ss_pred             chh
Q 020914          268 GFF  270 (320)
Q Consensus       268 ~~~  270 (320)
                      ...
T Consensus       365 ~~~  367 (406)
T 3sf4_A          365 STN  367 (406)
T ss_dssp             CC-
T ss_pred             HHH
Confidence            543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.85  E-value=3.4e-20  Score=141.09  Aligned_cols=118  Identities=14%  Similarity=0.090  Sum_probs=110.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      +|.++..++.+|..++..|++++|+..|++++..+|.++.+|+++|.++..+|++++|+..|++++.++|+++.+++.+|
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   96 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA   96 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  120 (320)
                      .+|..+|++++|+..|+++++++|+++........+..
T Consensus        97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  134 (148)
T 2vgx_A           97 ECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS  134 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHH
Confidence            99999999999999999999999998876544444433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.85  E-value=9.4e-20  Score=155.75  Aligned_cols=236  Identities=10%  Similarity=0.012  Sum_probs=175.6

Q ss_pred             hHHHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------ccCH-------HHHH
Q 020914            4 EAEEMSLKDKGNEFFKA----GNY----LKAAALYTQAIKQDPSNPTLFSNRAAAFLH-------LVKL-------NKAL   61 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~   61 (320)
                      |.+...|......-...    ++.    ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+
T Consensus         5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~   84 (308)
T 2ond_A            5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA   84 (308)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence            45556666665554443    243    789999999999999999999999999874       5885       9999


Q ss_pred             HHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 020914           62 ADAETTIS-LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-VSRKIKRVSQLAKDKKRAQEVENIRSNVD  139 (320)
Q Consensus        62 ~~~~~al~-l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  139 (320)
                      ..|++|++ ++|++..+|..+|.++...|++++|+..|+++++++|.++. +|..+|.++...|++++|...+.  ..+.
T Consensus        85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~a~~  162 (308)
T 2ond_A           85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK--KARE  162 (308)
T ss_dssp             HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH--HHHT
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHH--HHHh
Confidence            99999999 79999999999999999999999999999999999999987 99999999999999999977653  2222


Q ss_pred             HHHhHHHHHHHHhhhhcchhh-hhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhcc---ccC
Q 020914          140 MVQHLDEFKSEMSEKYGAEEC-WKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNV---DKA  212 (320)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~---~~~  212 (320)
                      ..+.    ...++...+.... ..|....+...|+++++.++....+.-.   .+..+|+.++|+..|++++..   .|.
T Consensus       163 ~~p~----~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~  238 (308)
T 2ond_A          163 DART----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             STTC----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             cCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence            1111    1112211222211 1466667777777777666543322222   667789999999999999995   443


Q ss_pred             -cCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCC
Q 020914          213 -FESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKS  245 (320)
Q Consensus       213 -~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~  245 (320)
                       ....|. .+.+....|++  |...++++++..|...
T Consensus       239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence             222333 56666777777  9999999998855443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=5.2e-21  Score=162.65  Aligned_cols=238  Identities=13%  Similarity=0.095  Sum_probs=176.7

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---   70 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---   70 (320)
                      ..|..+.++..+|.++...|++++|+..|++++++        .|..+.++..+|.+|...|++++|+..+++++.+   
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999985        6777899999999999999999999999999988   


Q ss_pred             -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020914           71 -----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN--------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN  137 (320)
Q Consensus        71 -----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  137 (320)
                           +|....++..+|.++..+|++++|+..|++++++.        |....++..+|.++...|++++|+....  ..
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--~a  179 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ--RA  179 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH--HH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--HH
Confidence                 45668899999999999999999999999999984        5567789999999999999999987753  33


Q ss_pred             hHHHHhH----HHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc--ccChh----------------HHhhhcC
Q 020914          138 VDMVQHL----DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS--KVDAK----------------VYFLLDK  195 (320)
Q Consensus       138 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~--~~~~~----------------~~~~lg~  195 (320)
                      +......    .+....+...++.++...|.+..|...+++++...+...  ...+.                .+...+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS  259 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence            3322211    344556677778888888888888888888887654421  11111                3333445


Q ss_pred             hhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchh
Q 020914          196 EKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLV  241 (320)
Q Consensus       196 ~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~  241 (320)
                      +.+++..+..+....|.....+. +|.++...|++  |++.|++|+++.
T Consensus       260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            55555566666655554433333 77788888888  888888888774

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.85  E-value=6.2e-22  Score=151.11  Aligned_cols=119  Identities=13%  Similarity=0.046  Sum_probs=110.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 020914           12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQY   91 (320)
Q Consensus        12 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~   91 (320)
                      .+|.++...|++++|+..+++++..+|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914           92 DDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE  130 (320)
Q Consensus        92 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  130 (320)
                      ++|+.+|+++++++|+++.++..+|.++...|++++|..
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~  120 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK  120 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence            999999999999999999999999999999998876643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.85  E-value=3.5e-21  Score=181.69  Aligned_cols=121  Identities=12%  Similarity=0.022  Sum_probs=108.6

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAI--------KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW   74 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   74 (320)
                      .|.++.+++..|   ...|++++|++.|++++        +.+|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus       390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  466 (681)
T 2pzi_A          390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR  466 (681)
T ss_dssp             CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence            355566666666   78999999999999999        9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 020914           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK  126 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  126 (320)
                      +.+|+.+|.++..+|++++|++.|+++++++|++..++..+|.++...|+++
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~  518 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTD  518 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Confidence            9999999999999999999999999999999999999998888765444433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=2.4e-21  Score=164.25  Aligned_cols=236  Identities=7%  Similarity=-0.032  Sum_probs=182.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914           15 NEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD   93 (320)
Q Consensus        15 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~   93 (320)
                      ...+..|+|++|+..+++....+|++ .++...++.+|..+|++++|+..++..   +|....++..++..+...+++++
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHH
Confidence            55678889999999888877777776 357788888999999999988877652   56567788888888888888999


Q ss_pred             HHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHH
Q 020914           94 ALSAFQTALQY--NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVET  171 (320)
Q Consensus        94 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  171 (320)
                      |++.+++++..  +|+++.++..+|.++...|++++|++....           +....+....+.++...|..+.|...
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~  152 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----------GDSLECMAMTVQILLKLDRLDLARKE  152 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999888875  588888888899988888999988776532           12233455556666667777777777


Q ss_pred             HHHHHHhHhhccccCh-h----HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCC
Q 020914          172 METAVKSWHETSKVDA-K----VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAP  243 (320)
Q Consensus       172 ~~~a~~~~~~~~~~~~-~----~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~  243 (320)
                      +++++...+......- .    .+...|++++|+..|+++++..|.....+. +|.++..+|++  |++.|++++.+   
T Consensus       153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---  229 (291)
T 3mkr_A          153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK---  229 (291)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            7776655433211100 1    222348999999999999999887755554 89999999999  99999999998   


Q ss_pred             CCCCChhHhhhcccccccccCcccch
Q 020914          244 KSIISYPQVWRGQGLRKWRHSQQDGF  269 (320)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~l~~~~~~  269 (320)
                        +|.++++|.++|.++..+|+..++
T Consensus       230 --~p~~~~~l~~l~~~~~~~g~~~ea  253 (291)
T 3mkr_A          230 --DSGHPETLINLVVLSQHLGKPPEV  253 (291)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred             --CCCCHHHHHHHHHHHHHcCCCHHH
Confidence              888899999999999999998764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.85  E-value=5.3e-20  Score=138.96  Aligned_cols=123  Identities=15%  Similarity=0.101  Sum_probs=114.3

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      .+|.++..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+++.+++.+
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  124 (320)
                      |.++..+|++++|+..|+++++++|+++........+....+.
T Consensus        93 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  135 (142)
T 2xcb_A           93 AECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA  135 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999998776665555544443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.84  E-value=1.2e-20  Score=142.33  Aligned_cols=117  Identities=16%  Similarity=0.234  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHhc--
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-------NPT-----LFSNRAAAFLHLVKLNKALADAETTISL--   70 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~l--   70 (320)
                      ..+..+.++|+.++..|+|++|+..|++||+++|+       +..     +|.++|.++..+|+|++|+.+|+++|++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            45788999999999999999999999999999999       444     9999999999999999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914           71 -----NPQWEKGY----FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (320)
Q Consensus        71 -----~p~~~~~~----~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  121 (320)
                           +|+++.+|    +++|.++..+|++++|+.+|+++++++|++..+...+..+...
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~  148 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV  148 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                 99999999    9999999999999999999999999999998877776665443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.84  E-value=5.9e-20  Score=135.97  Aligned_cols=112  Identities=25%  Similarity=0.379  Sum_probs=102.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------H
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------E   75 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~   75 (320)
                      .++.+.++.++|+.++..|+|++|+.+|++||+++|+++.+|.++|.+|..+|++++|+..|+++++++|++       .
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999999998875       3


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      .+|.++|.++..+|++++|++.|+++|+.+|+ ++....+
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l  122 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV  122 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence            58999999999999999999999999999885 5544443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.84  E-value=6.8e-20  Score=154.58  Aligned_cols=106  Identities=31%  Similarity=0.479  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |.++..++.+|..++..|++++|+..|++++..+|+++.+++++|.+|..+|++++|+..++++++++|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~  109 (320)
                      +|..+|++++|+..|+++++++|++.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccch
Confidence            99999999999999999999999764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.83  E-value=3.2e-20  Score=163.42  Aligned_cols=231  Identities=10%  Similarity=0.009  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc---CC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HH
Q 020914           10 LKDKGNEFFKAGNYLKAAALYTQAIKQ---DP---SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EK   76 (320)
Q Consensus        10 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~   76 (320)
                      ++.+|..++..|++++|+..|++|+++   .|   ..+.+++.+|.+|..+|++++|+..+++|+++.+..       ..
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            444999999999999999999999987   23   246899999999999999999999999999985443       46


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH-H-HHH
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSA------EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL-D-EFK  148 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~-~~~  148 (320)
                      ++..+|.+|..+|++++|+.+|++++++.|...      .++.++|.++...|++++|+....  ..+...... . +..
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~--~al~~~~~~~~~~~~  263 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK--RAIAVFEESNILPSL  263 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHTTCGGGH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHhhccchhH
Confidence            899999999999999999999999999866443      589999999999999999988753  333322211 1 344


Q ss_pred             HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcccc--------ChhHHhhhcC---hhHHHHhhhhhhccccCcCCcc
Q 020914          149 SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV--------DAKVYFLLDK---EKTDTEKYAPIVNVDKAFESPH  217 (320)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~--------~~~~~~~lg~---~~~A~~~~~~a~~~~~~~~~~~  217 (320)
                      ..+...+|.++...|.+..|...+++++...+.....        ...++...|+   ..+|+..+++.-..........
T Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~  343 (383)
T 3ulq_A          264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAI  343 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            6677778888888888888888888888776542211        1116667777   7778777777622211112223


Q ss_pred             chhhHHHHhhHH--HHHHHHHHhchhC
Q 020914          218 THGSCFQFLRQY--ADDSFSSAACLVA  242 (320)
Q Consensus       218 ~~g~~~~~~~~~--A~~~~~~al~~~~  242 (320)
                      .+|.+|...|++  |+..|++|+.+..
T Consensus       344 ~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          344 DVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            488888889998  9999999998743

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.83  E-value=3.7e-20  Score=164.06  Aligned_cols=232  Identities=14%  Similarity=0.142  Sum_probs=191.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCC
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL------NPQW   74 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~   74 (320)
                      +..+..+|.++...|++++|+..|++++++      .|..+.++..+|.+|..+|++++|+..|++++.+      .|..
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  165 (411)
T 4a1s_A           86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE  165 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH
Confidence            468999999999999999999999999988      5667899999999999999999999999999998      5667


Q ss_pred             HHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           75 EKGYFRKGCILEAMEQ-----------------YDDALSAFQTALQYN------PQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~-----------------~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      ..++..+|.+|..+|+                 +++|+..|++++++.      |....++..+|.++...|++++|+..
T Consensus       166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  245 (411)
T 4a1s_A          166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH  245 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            8899999999999999                 999999999999874      33456899999999999999999877


Q ss_pred             HHHhhhhHHHH--hHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------hhHHhhhcChhHHH
Q 020914          132 ENIRSNVDMVQ--HLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEKTDT  200 (320)
Q Consensus       132 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------~~~~~~lg~~~~A~  200 (320)
                      ..  ..+....  ........++..+|.++...|.+..+...+++++...++.....         ..++...|++++|+
T Consensus       246 ~~--~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  323 (411)
T 4a1s_A          246 HQ--ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI  323 (411)
T ss_dssp             HH--HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HH--HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            53  3333222  22233445677788888889999999999999988777542111         11888999999999


Q ss_pred             HhhhhhhccccCcC-------CccchhhHHHHhhHH--HHHHHHHHhch
Q 020914          201 EKYAPIVNVDKAFE-------SPHTHGSCFQFLRQY--ADDSFSSAACL  240 (320)
Q Consensus       201 ~~~~~a~~~~~~~~-------~~~~~g~~~~~~~~~--A~~~~~~al~~  240 (320)
                      ..+++++.+.+...       ....+|.++..+|++  |+..|++|+.+
T Consensus       324 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          324 EYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99999998865542       222378888888888  99999999988

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.83  E-value=2.3e-19  Score=146.33  Aligned_cols=210  Identities=12%  Similarity=0.100  Sum_probs=155.5

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914           38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP-QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (320)
Q Consensus        38 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  116 (320)
                      +.++..++.+|.++...|++++|+..|+++++++| .+..+++.+|.++..+|++++|+..|+++++++|++..++..+|
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            56789999999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-----HHh
Q 020914          117 RVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----VYF  191 (320)
Q Consensus       117 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----~~~  191 (320)
                      .++...|++++|+...  ...+...+.    ...+...++.++...|......+.+++|+..+.+++.++|.     ++.
T Consensus        84 ~~~~~~~~~~~A~~~~--~~al~~~p~----~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  157 (228)
T 4i17_A           84 AAYRDMKNNQEYIATL--TEGIKAVPG----NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALY  157 (228)
T ss_dssp             HHHHHTTCHHHHHHHH--HHHHHHSTT----CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHH--HHHHHHCCC----cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence            9999999999998774  333332222    22222333444555555555666666677777777766664     344


Q ss_pred             hhcCh--hHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhccccc
Q 020914          192 LLDKE--KTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLR  259 (320)
Q Consensus       192 ~lg~~--~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  259 (320)
                      .+|..  ..+...++++..+.+... ....+......+.|  |+..|++++++     +|..+.++..++.+
T Consensus       158 ~l~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~l~~i  223 (228)
T 4i17_A          158 SLGVLFYNNGADVLRKATPLASSNK-EKYASEKAKADAAFKKAVDYLGEAVTL-----SPNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHHHHHHH
Confidence            44432  233334466666654431 11244445566667  99999999999     77777777766544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.83  E-value=6.2e-20  Score=157.16  Aligned_cols=235  Identities=11%  Similarity=0.117  Sum_probs=188.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------   74 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------   74 (320)
                      +..+..+|.++...|++++|+..+++++++      .|..+.++..+|.++..+|++++|+..+++++++.|..      
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  122 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  122 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence            678999999999999999999999999987      44557899999999999999999999999999986643      


Q ss_pred             HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           75 EKGYFRKGCILEAMEQ--------------------YDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      ..++..+|.++..+|+                    +++|+..+++++.+      .|....++..+|.++...|++++|
T Consensus       123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  202 (338)
T 3ro2_A          123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA  202 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            4489999999999999                    99999999999987      334456899999999999999999


Q ss_pred             HHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------hhHHhhhcChhHH
Q 020914          129 QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEKTD  199 (320)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------~~~~~~lg~~~~A  199 (320)
                      +.....................+...+|.++...|.+..+...+++++...+......         ..++...|++++|
T Consensus       203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  282 (338)
T 3ro2_A          203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA  282 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence            8775322222222222334455777788888888999999999999888776542111         1188899999999


Q ss_pred             HHhhhhhhccccCcCC-------ccchhhHHHHhhHH--HHHHHHHHhchh
Q 020914          200 TEKYAPIVNVDKAFES-------PHTHGSCFQFLRQY--ADDSFSSAACLV  241 (320)
Q Consensus       200 ~~~~~~a~~~~~~~~~-------~~~~g~~~~~~~~~--A~~~~~~al~~~  241 (320)
                      +..+++++.+.+....       ...+|.++...|++  |+..|++++.+.
T Consensus       283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            9999999988655422       22378888888888  999999999873

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.83  E-value=4.7e-19  Score=144.41  Aligned_cols=111  Identities=19%  Similarity=0.185  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---HHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK---GYF   79 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~   79 (320)
                      .+..++.+|..++..|+|++|+..|+++++..|.+   ..+++.+|.+|..+|++++|+..|+++++.+|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            46789999999999999999999999999999876   479999999999999999999999999999999864   899


Q ss_pred             HHHHHHHH------------------ccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914           80 RKGCILEA------------------MEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (320)
Q Consensus        80 ~lg~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~  116 (320)
                      .+|.++..                  +|++++|+..|+++++.+|+++.++..+.
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~  137 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK  137 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence            99999986                  57999999999999999999987765433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.83  E-value=2.7e-19  Score=138.40  Aligned_cols=117  Identities=31%  Similarity=0.407  Sum_probs=111.7

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .+.++..++.+|.+++..|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.+|+.+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      .+|..+|++++|+.+|+++++++|++..++...+...
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999999999999999999999999777666543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.82  E-value=1.6e-19  Score=139.45  Aligned_cols=123  Identities=27%  Similarity=0.399  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------------------DPSNPTLFSNRAAAFLHLVKLNKALADAET   66 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   66 (320)
                      ..+..+..+|..++..|+|++|+..|.+++.+                  +|.++.++.++|.||..+|++++|+..+++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            46789999999999999999999999999999                  777789999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHH
Q 020914           67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA-EVSRKIKRVSQLAKDKKR  127 (320)
Q Consensus        67 al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~  127 (320)
                      +++++|+++.+|+.+|.+|..+|++++|+..|+++++++|+++ .+...++.+....+...+
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~  150 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA  150 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999 778888887766655443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.82  E-value=4.2e-19  Score=145.56  Aligned_cols=130  Identities=16%  Similarity=0.144  Sum_probs=125.7

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++.+|+++.++..+|
T Consensus        53 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  132 (243)
T 2q7f_A           53 NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG  132 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .++...|++++|+..|+++++.+|++..++..+|.++...|++++|+...
T Consensus       133 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          133 TVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF  182 (243)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999997664

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.82  E-value=5.3e-19  Score=138.41  Aligned_cols=129  Identities=18%  Similarity=0.170  Sum_probs=124.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      +..+..++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   84 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL   84 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      ++...|++++|++.|+++++.+|.+..++..+|.++...|++++|+...
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  133 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF  133 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999997764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.82  E-value=2.1e-19  Score=152.29  Aligned_cols=234  Identities=8%  Similarity=-0.059  Sum_probs=179.2

Q ss_pred             chHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHH
Q 020914            3 AEAE-EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYF   79 (320)
Q Consensus         3 ~p~~-a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~   79 (320)
                      +|.+ .++...++..+...|++++|+..++.   .+|....++..++..+...|++++|++.+++++..  +|+++.+++
T Consensus        29 ~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~  105 (291)
T 3mkr_A           29 SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLL  105 (291)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHH
Confidence            4555 45778889999999999999998866   26667788999999999999999999999999875  699999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchh
Q 020914           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE  159 (320)
Q Consensus        80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (320)
                      .+|.++...|++++|++.|++     |++..++..+|.++...|++++|+....  ..+...+...  ...+...+....
T Consensus       106 ~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~--~~~~~~p~~~--~~~l~~a~~~l~  176 (291)
T 3mkr_A          106 MAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELK--KMQDQDEDAT--LTQLATAWVSLA  176 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCTTCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHhhCcCcH--HHHHHHHHHHHH
Confidence            999999999999999999998     8999999999999999999999987753  2222222110  011111111222


Q ss_pred             hhhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH---HHH
Q 020914          160 CWKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY---ADD  232 (320)
Q Consensus       160 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~---A~~  232 (320)
                      ...|.+..|...+++++...+....+.-.   ++..+|++++|+..++++++++|.....+. +|.++..+|++   +.+
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~  256 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR  256 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence            23356666777777666654432222111   788999999999999999999998865554 88888888887   568


Q ss_pred             HHHHHhchhCCCCCCChhHhh
Q 020914          233 SFSSAACLVAPKSIISYPQVW  253 (320)
Q Consensus       233 ~~~~al~~~~~~~~~~~~~~~  253 (320)
                      .+++++++     +|+++.+.
T Consensus       257 ~~~~~~~~-----~P~~~~~~  272 (291)
T 3mkr_A          257 YLSQLKDA-----HRSHPFIK  272 (291)
T ss_dssp             HHHHHHHH-----CTTCHHHH
T ss_pred             HHHHHHHh-----CCCChHHH
Confidence            99999999     67666553

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.82  E-value=7.4e-19  Score=152.02  Aligned_cols=128  Identities=21%  Similarity=0.317  Sum_probs=123.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETT   67 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a   67 (320)
                      .|..+.++..+|.+++..|++++|+..|+++++++|.+               ..++.++|.+|..+|++++|+.+|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            47789999999999999999999999999999999998               699999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914           68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE  130 (320)
Q Consensus        68 l~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~  130 (320)
                      ++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.++...|++++|..
T Consensus       223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998853

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.81  E-value=1e-18  Score=149.36  Aligned_cols=236  Identities=11%  Similarity=-0.041  Sum_probs=183.3

Q ss_pred             chHHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFK-------AGNY-------LKAAALYTQAIK-QDPSNPTLFSNRAAAFLHLVKLNKALADAETT   67 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   67 (320)
                      .|.++..|+..|..+..       .|++       ++|+..|++|++ ++|++..+|..+|.++...|++++|+..|+++
T Consensus        46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  125 (308)
T 2ond_A           46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  125 (308)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            57889999999999874       5885       999999999999 79999999999999999999999999999999


Q ss_pred             HhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHhHH
Q 020914           68 ISLNPQWEK-GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL-AKDKKRAQEVENIRSNVDMVQHLD  145 (320)
Q Consensus        68 l~l~p~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~  145 (320)
                      ++++|+++. +|..+|.++...|++++|+..|+++++.+|.+..+|...+.+... .|++++|...++  ..+.    ..
T Consensus       126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~--~al~----~~  199 (308)
T 2ond_A          126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE--LGLK----KY  199 (308)
T ss_dssp             HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHH--HHHH----HH
T ss_pred             HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHH----hC
Confidence            999999987 999999999999999999999999999999999888777666433 588888876642  2222    23


Q ss_pred             HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhH--h--hccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc
Q 020914          146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSW--H--ETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT  218 (320)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--~--~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~  218 (320)
                      +....+...++..+...|....+...|++++...  +  +...+...   .....|+.+.|...+++++++.|.......
T Consensus       200 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~  279 (308)
T 2ond_A          200 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE  279 (308)
T ss_dssp             TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch
Confidence            3345666777777777788888888888877631  1  11111111   556789999999999999999997543321


Q ss_pred             hhhHHHHhhHHHHHHHHHHhchhCCCCCCChhHhhhcccc
Q 020914          219 HGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGL  258 (320)
Q Consensus       219 ~g~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  258 (320)
                      .+.+   ..+      .+.+.+     +|..++++..+|-
T Consensus       280 ~~~~---~~r------~~~l~~-----~P~~~~~ln~lgY  305 (308)
T 2ond_A          280 TALL---VDR------YKFMDL-----YPCSASELKALGY  305 (308)
T ss_dssp             HHHH---HTT------TCBTTB-----CSSCHHHHHTTTC
T ss_pred             HHHH---HHH------HHhccc-----CCCCHHHHHhcCC
Confidence            2111   111      144455     7777888888774

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=2e-19  Score=169.78  Aligned_cols=179  Identities=12%  Similarity=-0.019  Sum_probs=147.4

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++.+++.+|.++...|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|
T Consensus       429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg  508 (681)
T 2pzi_A          429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALA  508 (681)
T ss_dssp             CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred             cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhh
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK  162 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (320)
                      .++..+|++++ ++.|+++++++|++..++.++|.++...|++++|++.+  ...+...+    .........+.++...
T Consensus       509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~--~~al~l~P----~~~~a~~~~~~~~~~~  581 (681)
T 2pzi_A          509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL--DEVPPTSR----HFTTARLTSAVTLLSG  581 (681)
T ss_dssp             HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH--HTSCTTST----THHHHHHHHHHHTC--
T ss_pred             HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH--HhhcccCc----ccHHHHHHHHHHHHcc
Confidence            99999999999 99999999999999999999999999999999997774  33333322    2333444455554443


Q ss_pred             hHHHHH-HHHHHHHHHhHhhccccChh
Q 020914          163 HVFSFV-VETMETAVKSWHETSKVDAK  188 (320)
Q Consensus       163 ~~~~~a-~~~~~~a~~~~~~~~~~~~~  188 (320)
                      +....+ .+.+++|+..+.......+.
T Consensus       582 ~~~~~~~~~~~~~A~~~l~~~~~~~~~  608 (681)
T 2pzi_A          582 RSTSEVTEEQIRDAARRVEALPPTEPR  608 (681)
T ss_dssp             -----CCHHHHHHHHHHHHTSCTTSTT
T ss_pred             CCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence            332333 56777777777666544443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.80  E-value=6.9e-18  Score=130.00  Aligned_cols=128  Identities=30%  Similarity=0.490  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      ..+..++.+|.+++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHHHHHH
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV--SQLAKDKKRAQEVE  132 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~A~~~~  132 (320)
                      +..+|++++|+..|+++++++|++..++..++.+  +...|++++|+...
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~  140 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD  140 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999988665554  66778888887664

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.80  E-value=8e-19  Score=130.02  Aligned_cols=122  Identities=37%  Similarity=0.609  Sum_probs=117.1

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      ..|..+.+++.+|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|+++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  123 (320)
                      |.++..+|++++|+..|+++++++|.+..++..++.++...|
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999886554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.80  E-value=5e-19  Score=143.13  Aligned_cols=199  Identities=11%  Similarity=0.003  Sum_probs=158.9

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        36 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      .+|.++.++..+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|++.|+++++.+|++..++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhc
Q 020914          116 KRVSQLA-KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLD  194 (320)
Q Consensus       116 ~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg  194 (320)
                      |.++... |++++|+.....  .+. .+ ..+....+...+                               ..++...|
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~--~~~-~~-~~~~~~~~~~~l-------------------------------~~~~~~~~  127 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDK--ALA-DP-TYPTPYIANLNK-------------------------------GICSAKQG  127 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHH--HHT-ST-TCSCHHHHHHHH-------------------------------HHHHHHTT
T ss_pred             HHHHHHhcCcHHHHHHHHHH--HHc-Cc-CCcchHHHHHHH-------------------------------HHHHHHcC
Confidence            9999999 999999766431  111 00 000000000000                               12666788


Q ss_pred             ChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCC-ChhHhhhcccccccccCcccchh
Q 020914          195 KEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSII-SYPQVWRGQGLRKWRHSQQDGFF  270 (320)
Q Consensus       195 ~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~  270 (320)
                      ++++|+..++++++..|.....+. +|.++...+++  |+..|++++..     .| ..+.+|...+.++...|+.+.+.
T Consensus       128 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~  202 (225)
T 2vq2_A          128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR-----VEVLQADDLLLGWKIAKALGNAQAAY  202 (225)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence            888888889888888887644444 88889999999  99999999988     45 55788888888888888887765


Q ss_pred             hhcc
Q 020914          271 VQFE  274 (320)
Q Consensus       271 ~~~~  274 (320)
                      .-+.
T Consensus       203 ~~~~  206 (225)
T 2vq2_A          203 EYEA  206 (225)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.80  E-value=2.3e-18  Score=126.91  Aligned_cols=122  Identities=30%  Similarity=0.498  Sum_probs=117.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++.++|+++.+++.+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  124 (320)
                      .++..+|++++|+..|+++++++|++..++..++.++...|+
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999877665

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.80  E-value=1.7e-18  Score=129.30  Aligned_cols=121  Identities=27%  Similarity=0.432  Sum_probs=112.6

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++..++.+|.+++..|++++|+..|++++..+|.++.+++++|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQ-----SAEVSRKIKRVSQLAK  123 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~  123 (320)
                      .++..+|++++|+..|+++++++|+     +..++..+..+.....
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  130 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998     6777777776655443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.80  E-value=9.9e-20  Score=138.57  Aligned_cols=111  Identities=11%  Similarity=-0.013  Sum_probs=104.4

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914           22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA  101 (320)
Q Consensus        22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  101 (320)
                      ++-.+-..+++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.+|+++|.++..+|++++|+.+|+++
T Consensus        17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            34444466788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914          102 LQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       102 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      ++++|+++.+|..+|.++...|++++|+..+
T Consensus        97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~  127 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECF  127 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999998774

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.80  E-value=2.8e-18  Score=141.65  Aligned_cols=130  Identities=14%  Similarity=0.135  Sum_probs=124.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS--LNPQWEKGYFR   80 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~   80 (320)
                      .|..+.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++.  .+|.++.++..
T Consensus        67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  146 (252)
T 2ho1_A           67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN  146 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence            4667889999999999999999999999999999999999999999999999999999999999999  88999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|....
T Consensus       147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  198 (252)
T 2ho1_A          147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY  198 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999997664

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.80  E-value=4.2e-18  Score=135.83  Aligned_cols=126  Identities=17%  Similarity=0.249  Sum_probs=119.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----------------TLFSNRAAAFLHLVKLNKALADAETT   67 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~A~~~~~~a   67 (320)
                      +..+..+..+|..++..|+|++|+..|.+++.+.|.++                .++.++|.++..+|++++|+.+++++
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            45788999999999999999999999999999999887                89999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 020914           68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (320)
Q Consensus        68 l~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  129 (320)
                      ++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++..++.
T Consensus       115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888888774

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.80  E-value=4.9e-19  Score=150.17  Aligned_cols=212  Identities=11%  Similarity=-0.004  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------H
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------E   75 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~   75 (320)
                      ..+...|.++...|++++|+.+|.+++++.+.      .+.++.++|.+|..+|++++|+.+|++++++.|..      .
T Consensus        38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a  117 (292)
T 1qqe_A           38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (292)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            35666678888899999999999999987432      26789999999999999999999999999987753      5


Q ss_pred             HHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHH
Q 020914           76 KGYFRKGCILEAM-EQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK  148 (320)
Q Consensus        76 ~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  148 (320)
                      .++.++|.+|... |++++|+.+|++++++.|.+      ..++..+|.++...|++++|+..+.  ..+...+..... 
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~~~~~~~-  194 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS--KLIKSSMGNRLS-  194 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHTTSSCTTT-
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHhcCCcc-
Confidence            6888999999995 99999999999999988754      4567888888888888888866532  111111100000 


Q ss_pred             HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc------hhhH
Q 020914          149 SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT------HGSC  222 (320)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~------~g~~  222 (320)
                         .......+...|                        .++..+|++.+|+..|+++++++|.......      ++..
T Consensus       195 ---~~~~~~~~~~lg------------------------~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~  247 (292)
T 1qqe_A          195 ---QWSLKDYFLKKG------------------------LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA  247 (292)
T ss_dssp             ---GGGHHHHHHHHH------------------------HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHH------------------------HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence               000000000001                        1566778888888888888888776543221      1222


Q ss_pred             HH--HhhHH--HHHHHHHHhchhCCCCCCChhHhhh
Q 020914          223 FQ--FLRQY--ADDSFSSAACLVAPKSIISYPQVWR  254 (320)
Q Consensus       223 ~~--~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~  254 (320)
                      +.  ..+++  |+..|++++.+     +|.+...+.
T Consensus       248 ~~~~~~~~~~~A~~~~~~~~~l-----~~~~~~~~~  278 (292)
T 1qqe_A          248 VNEGDSEQLSEHCKEFDNFMRL-----DKWKITILN  278 (292)
T ss_dssp             HHTTCTTTHHHHHHHHTTSSCC-----CHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHhccCCcc-----HHHHHHHHH
Confidence            22  22346  88888888877     666655555

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.79  E-value=6.9e-19  Score=159.27  Aligned_cols=129  Identities=12%  Similarity=0.174  Sum_probs=125.0

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCC
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL---------VKLNKALADAETTISLNPQ   73 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~l~p~   73 (320)
                      .|.++.+|+.+|.++...|++++|+.+|+++++++|+ ..++.++|.++..+         |++++|+..|+++++++|+
T Consensus       133 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  211 (474)
T 4abn_A          133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL  211 (474)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence            5778899999999999999999999999999999999 79999999999999         9999999999999999999


Q ss_pred             CHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           74 WEKGYFRKGCILEAM--------EQYDDALSAFQTALQYNP---QSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        74 ~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      ++.+|+.+|.+|..+        |++++|+..|+++++++|   +++.++..+|.++...|++++|++.+
T Consensus       212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  281 (474)
T 4abn_A          212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF  281 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999        999999999999999999   99999999999999999999997764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.79  E-value=1.4e-18  Score=127.30  Aligned_cols=104  Identities=14%  Similarity=0.114  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   86 (320)
                      ...++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++.
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHH
Q 020914           87 AMEQYDDALSAFQTALQYNPQSAE  110 (320)
Q Consensus        87 ~~~~~~~A~~~~~~al~~~p~~~~  110 (320)
                      .+|++++|+..|+++++++|++..
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC-------
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999998754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.79  E-value=1.1e-18  Score=153.31  Aligned_cols=231  Identities=14%  Similarity=0.104  Sum_probs=171.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------C
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDP------SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-------W   74 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-------~   74 (320)
                      ..++.+|..++..|++++|+..|++|+++.+      ..+.+++++|.+|..+|++++|+..+++++++.+.       .
T Consensus       102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  181 (378)
T 3q15_A          102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT  181 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence            3678899999999999999999999998742      24689999999999999999999999999998543       2


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh-HHHH
Q 020914           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQH-LDEF  147 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~  147 (320)
                      +.++..+|.+|..+|++++|+++|++++++.+.      ...++.++|.++...|++++|+....  ..+..... ..+.
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~--~al~~~~~~~~~~  259 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ--KAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH--HHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHhhCChh
Confidence            568899999999999999999999999997442      24578999999999999999987753  33332221 1122


Q ss_pred             HHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh--------hHHhhhcC---hhHHHHhhhhhhccccCcCCc
Q 020914          148 KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA--------KVYFLLDK---EKTDTEKYAPIVNVDKAFESP  216 (320)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~--------~~~~~lg~---~~~A~~~~~~a~~~~~~~~~~  216 (320)
                      ...+...+|.++...|.+..|...+++++....+.....-        .++...|+   ..+|+..+++.-.........
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~  339 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACA  339 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHH
Confidence            3566677788888888888888888888776544221111        14555566   667777666532211111222


Q ss_pred             cchhhHHHHhhHH--HHHHHHHHhch
Q 020914          217 HTHGSCFQFLRQY--ADDSFSSAACL  240 (320)
Q Consensus       217 ~~~g~~~~~~~~~--A~~~~~~al~~  240 (320)
                      ..+|.+|...|++  |+..|+++++.
T Consensus       340 ~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          340 RSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            2377788888888  88888888865

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.79  E-value=2.3e-18  Score=138.60  Aligned_cols=162  Identities=11%  Similarity=0.087  Sum_probs=122.4

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHh
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR----------------KGCILEAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~----------------lg~~~~~~~~~~~A~~~~~~al~  103 (320)
                      ++..+...|..+...|++++|+..|+++++++|+++.+|+.                +|.+|..+|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            57788999999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc
Q 020914          104 YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS  183 (320)
Q Consensus       104 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~  183 (320)
                      ++|+++.++..+|.++...|++++|+..+  ...+.    +.+.....+..+|.++...+.     ...+.+...+.+..
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~--~~al~----~~P~~~~a~~~lg~~~~~~~~-----~~~~~~~~~~~~~~  151 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMY--EKILQ----LEADNLAANIFLGNYYYLTAE-----QEKKKLETDYKKLS  151 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHH--HHHHH----HCTTCHHHHHHHHHHHHHHHH-----HHHHHHHHHHC---
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHH--HHHHH----cCCCCHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHh
Confidence            99999999999999999999999997764  22222    233344455555555543332     22333444454444


Q ss_pred             ccChh---------HHhhhcChhHHHHhhhhhhccccC
Q 020914          184 KVDAK---------VYFLLDKEKTDTEKYAPIVNVDKA  212 (320)
Q Consensus       184 ~~~~~---------~~~~lg~~~~A~~~~~~a~~~~~~  212 (320)
                      ...|.         ++..+|++++|+..|++++++.|+
T Consensus       152 ~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          152 SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            44432         444556677777777777777665

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.79  E-value=3.4e-18  Score=142.37  Aligned_cols=188  Identities=12%  Similarity=0.025  Sum_probs=137.8

Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--
Q 020914           34 IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS--  108 (320)
Q Consensus        34 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--  108 (320)
                      ..++|.++..++.+|..+...|++++|+..|+++++.+|++   +.+++.+|.+|..+|++++|+..|+++++++|++  
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            45688999999999999999999999999999999999999   9999999999999999999999999999998865  


Q ss_pred             -HHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhH
Q 020914          109 -AEVSRKIKRVSQL--------AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSW  179 (320)
Q Consensus       109 -~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~  179 (320)
                       +.++..+|.++..        .|++++|+..+                                        ++++..+
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~----------------------------------------~~~l~~~  127 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAF----------------------------------------QLFIDRY  127 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHH----------------------------------------HHHHHHC
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHH----------------------------------------HHHHHHC
Confidence             5688889988877        66666664442                                        2222222


Q ss_pred             hhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhccc
Q 020914          180 HETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQG  257 (320)
Q Consensus       180 ~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~  257 (320)
                      +....    +.............+...         ...+|.++...|+|  |+..|++++...|..  +..+.+|+.+|
T Consensus       128 p~~~~----~~~a~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~a~~~l~  192 (261)
T 3qky_A          128 PNHEL----VDDATQKIRELRAKLARK---------QYEAARLYERRELYEAAAVTYEAVFDAYPDT--PWADDALVGAM  192 (261)
T ss_dssp             TTCTT----HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS--TTHHHHHHHHH
T ss_pred             cCchh----HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHccCHHHHHHHHHHHHHHCCCC--chHHHHHHHHH
Confidence            21110    000000000000000000         23489999999999  999999999884432  23678999999


Q ss_pred             cccccc----------Ccccchhhhcccc
Q 020914          258 LRKWRH----------SQQDGFFVQFESP  276 (320)
Q Consensus       258 ~~~~~l----------~~~~~~~~~~~~~  276 (320)
                      .++..+          |+++++...+...
T Consensus       193 ~~~~~~g~~~~~~~~~~~~~~A~~~~~~~  221 (261)
T 3qky_A          193 RAYIAYAEQSVRARQPERYRRAVELYERL  221 (261)
T ss_dssp             HHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccchhhcccchHHHHHHHHHHH
Confidence            999987          8888887777653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.78  E-value=3.4e-18  Score=153.99  Aligned_cols=129  Identities=25%  Similarity=0.416  Sum_probs=119.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETT   67 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a   67 (320)
                      .|..+.++..+|..++..|+|++|+..|++|++++|.+               ..+|+++|.||..+|++++|+.+|+++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            36788999999999999999999999999999999998               699999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        68 l~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      ++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++...++++++...
T Consensus       344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.78  E-value=6.9e-19  Score=129.95  Aligned_cols=101  Identities=11%  Similarity=0.137  Sum_probs=95.6

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 020914           32 QAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (320)
Q Consensus        32 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  111 (320)
                      ++..++|+.+.++.++|.+|+..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            45578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 020914          112 SRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       112 ~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      |..+|.++...|++++|+..+
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~  104 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAY  104 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999997764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.78  E-value=1.6e-17  Score=120.11  Aligned_cols=114  Identities=32%  Similarity=0.574  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      .+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      ..+|++++|+..|+++++++|+++.++..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999999888764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.78  E-value=3.9e-18  Score=150.06  Aligned_cols=204  Identities=13%  Similarity=0.074  Sum_probs=157.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW--   74 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--   74 (320)
                      +..+.++..+|.++...|++++|+.++.+|+++.+.       .+.++.++|.+|..+|++++|+..|++++++.|..  
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  219 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ  219 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            457889999999999999999999999999988443       35689999999999999999999999999986543  


Q ss_pred             ----HHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH
Q 020914           75 ----EKGYFRKGCILEAMEQYDDALSAFQTALQ-----YN-PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL  144 (320)
Q Consensus        75 ----~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  144 (320)
                          ..++.++|.+|..+|++++|+.+|+++++     .+ |....++..+|.++...|++++|+....  ..+......
T Consensus       220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~~~~  297 (383)
T 3ulq_A          220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHS--KGMAYSQKA  297 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHc
Confidence                35899999999999999999999999999     46 7888999999999999999999987753  333332221


Q ss_pred             H-HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------hhHHhhhcChhHHHHhhhhhhccccCc
Q 020914          145 D-EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEKTDTEKYAPIVNVDKAF  213 (320)
Q Consensus       145 ~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------~~~~~~lg~~~~A~~~~~~a~~~~~~~  213 (320)
                      . +........++.++...|..    ..+++|+..+.+.....         ..+|..+|++++|+..+++++++....
T Consensus       298 ~~~~~~~~~~~l~~~~~~~~~~----~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i  372 (383)
T 3ulq_A          298 GDVIYLSEFEFLKSLYLSGPDE----EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI  372 (383)
T ss_dssp             TCHHHHHHHHHHHHHHTSSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence            1 11111133456666555553    33455555554442111         118899999999999999999886654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.77  E-value=3.3e-17  Score=138.62  Aligned_cols=240  Identities=13%  Similarity=0.039  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNY-LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--KLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      ......-......|.+ ++|+.++.++|.++|++..+|+.+|.++..+|  ++++++.+++++|.++|++..+|+.++.+
T Consensus        33 ~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~i  112 (306)
T 3dra_A           33 KQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLI  112 (306)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence            3444445555666666 68999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             H----HHc---cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHhHHHHHHHHhhhh
Q 020914           85 L----EAM---EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK--RAQEVENIRSNVDMVQHLDEFKSEMSEKY  155 (320)
Q Consensus        85 ~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (320)
                      +    ..+   ++++++++.+.++++.+|.+..+|...+.+....+.++  ++++...  ..+...+.    ........
T Consensus       113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~--~~i~~d~~----N~sAW~~R  186 (306)
T 3dra_A          113 IGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVD--KVIDTDLK----NNSAWSHR  186 (306)
T ss_dssp             HHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHH--HHHHHCTT----CHHHHHHH
T ss_pred             HHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHH--HHHHhCCC----CHHHHHHH
Confidence            9    777   78999999999999999999999999999998888776  6654432  22211111    11111111


Q ss_pred             cchhhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhH-HHHhhhhhhccc---cCcCCcc-chh
Q 020914          156 GAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKT-DTEKYAPIVNVD---KAFESPH-THG  220 (320)
Q Consensus       156 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~-A~~~~~~a~~~~---~~~~~~~-~~g  220 (320)
                      +.+....+.. .....++++++.+.+++.++|.          ++...|+... ..+..+++++++   +...... .++
T Consensus       187 ~~ll~~l~~~-~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la  265 (306)
T 3dra_A          187 FFLLFSKKHL-ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA  265 (306)
T ss_dssp             HHHHHSSGGG-CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred             HHHHHhcccc-chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence            1111111100 0012255555556666656655          4445555444 444556666655   3222222 256


Q ss_pred             hHHHHhhHH--HHHHHHHHhc-hhCCCCCCChhHhhhccccc
Q 020914          221 SCFQFLRQY--ADDSFSSAAC-LVAPKSIISYPQVWRGQGLR  259 (320)
Q Consensus       221 ~~~~~~~~~--A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~  259 (320)
                      .++...++.  |++.|+++++ .     +|.-...|..++..
T Consensus       266 ~~~~~~~~~~~A~~~~~~l~~~~-----Dpir~~yW~~~~~~  302 (306)
T 3dra_A          266 KIYTQQKKYNESRTVYDLLKSKY-----NPIRSNFWDYQISK  302 (306)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHT
T ss_pred             HHHHccCCHHHHHHHHHHHHhcc-----ChHHHHHHHHHHhh
Confidence            666666666  8888888775 4     55546667766653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.77  E-value=1.1e-18  Score=136.62  Aligned_cols=130  Identities=12%  Similarity=0.029  Sum_probs=114.8

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      ++|...+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..+
T Consensus         1 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~   79 (176)
T 2r5s_A            1 SNASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLI   79 (176)
T ss_dssp             -----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHH
Confidence            46777788999999999999999999999999999999999999999999999999999999999999999 88877777


Q ss_pred             HHHHH-HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           82 GCILE-AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        82 g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +.+.. ..++..+|+..|+++++++|+++.++..+|.++...|++++|+..+
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  131 (176)
T 2r5s_A           80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL  131 (176)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence            75543 3345567899999999999999999999999999999999997764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.76  E-value=7.1e-18  Score=142.98  Aligned_cols=220  Identities=12%  Similarity=0.054  Sum_probs=154.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHH
Q 020914           22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ------WEKGYFRKGCILEAMEQYDDAL   95 (320)
Q Consensus        22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~~~~~~~~A~   95 (320)
                      ++++|+.+|.++              |.+|..+|++++|+.+|++++.+.+.      .+.+|.++|.+|..+|++++|+
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            488999998887              67889999999999999999998542      2678999999999999999999


Q ss_pred             HHHHHHHhhCCCC------HHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHH
Q 020914           96 SAFQTALQYNPQS------AEVSRKIKRVSQLA-KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV  168 (320)
Q Consensus        96 ~~~~~al~~~p~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  168 (320)
                      .+|++++++.|..      ..++..+|.++... |++++|+..+  ...+...+..           +...         
T Consensus        98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~--~~Al~~~~~~-----------~~~~---------  155 (292)
T 1qqe_A           98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY--ELAGEWYAQD-----------QSVA---------  155 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH--HHHHHHHHHT-----------TCHH---------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH--HHHHHHHHhC-----------CChH---------
Confidence            9999999997754      45788888888885 8888886654  2222221110           0000         


Q ss_pred             HHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCc--------cchhhHHHHhhHH--HHHHHHHHh
Q 020914          169 VETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESP--------HTHGSCFQFLRQY--ADDSFSSAA  238 (320)
Q Consensus       169 ~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~--------~~~g~~~~~~~~~--A~~~~~~al  238 (320)
                           .+...+..    ...++..+|++++|+..|++++++.|.....        ...|.++..++++  |+..|++++
T Consensus       156 -----~~~~~~~~----lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  226 (292)
T 1qqe_A          156 -----LSNKCFIK----CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ  226 (292)
T ss_dssp             -----HHHHHHHH----HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred             -----HHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                 00000000    0137778899999999999999988776432        2268888889999  999999999


Q ss_pred             chhCCCCCCChhHhhhccccccc--ccCcccchhhhcccccccccccccc
Q 020914          239 CLVAPKSIISYPQVWRGQGLRKW--RHSQQDGFFVQFESPLLRKLWFIPS  286 (320)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~  286 (320)
                      .+.|..........+.+++..+.  ..+++++++..+.......+|....
T Consensus       227 ~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~  276 (292)
T 1qqe_A          227 SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI  276 (292)
T ss_dssp             CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred             hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence            99554443332334555555443  5678888999998877777775433

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.76  E-value=1.1e-17  Score=139.84  Aligned_cols=130  Identities=14%  Similarity=0.148  Sum_probs=120.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL----   70 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   70 (320)
                      .|..+.++..+|.++...|++++|+.+|++++++        +|..+.++..+|.+|..+|++++|+..|++++.+    
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999999999999999987        3666789999999999999999999999999998    


Q ss_pred             ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           71 ----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        71 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                          +|....++..+|.++..+|++++|+..|++++++        .|....++..+|.++...|++++|+...
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  192 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY  192 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                5777889999999999999999999999999999        7777889999999999999999998775

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.76  E-value=5.7e-17  Score=118.26  Aligned_cols=117  Identities=23%  Similarity=0.453  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      .+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  122 (320)
                      ...|++++|+..|+++++++|++..++..++.++...
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999887543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.76  E-value=6.7e-17  Score=135.31  Aligned_cols=196  Identities=16%  Similarity=0.132  Sum_probs=158.1

Q ss_pred             hHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCH
Q 020914            4 EAEEMSLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWE   75 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~   75 (320)
                      |.++.+++.+|.++..    .+++++|+..|+++++.+  ++.+++.+|.+|..    .+++++|+..|+++++.+  ++
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~  110 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA  110 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence            5567899999999999    999999999999999986  79999999999999    999999999999999984  89


Q ss_pred             HHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHhHHHH
Q 020914           76 KGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVENIRSNVDMVQHLDEF  147 (320)
Q Consensus        76 ~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~  147 (320)
                      .+++.+|.+|..    .+++++|+..|+++++.+  ++.++..+|.++..    .+++++|+..+..  .++.      .
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~--a~~~------~  180 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDK--ACDL------K  180 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH--HHHT------T
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH--HHHC------C
Confidence            999999999999    999999999999999976  78899999999988    8899999877532  2221      1


Q ss_pred             HHHHhhhhcchhhh----hhHHHHHHHHHHHHHHhHhhcc-ccChhHHhh----hcChhHHHHhhhhhhccccCc
Q 020914          148 KSEMSEKYGAEECW----KHVFSFVVETMETAVKSWHETS-KVDAKVYFL----LDKEKTDTEKYAPIVNVDKAF  213 (320)
Q Consensus       148 ~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~----lg~~~~A~~~~~~a~~~~~~~  213 (320)
                      .+.....+|.++..    .+.+..|...++++++.-+... .....+|..    .+++++|+.+|+++++++|..
T Consensus       181 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          181 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence            23344556666666    6667777777776665421000 000016777    899999999999999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.75  E-value=1.2e-17  Score=141.26  Aligned_cols=129  Identities=16%  Similarity=0.082  Sum_probs=123.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      |.++..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++..+|+....+...+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            66788999999999999999999999999999999999999999999999999999999999999999988888888888


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .+...++.++|+..|++++..+|+++.++..+|.++...|++++|+..+
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l  242 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL  242 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHH
Confidence            8999999999999999999999999999999999999999999997764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.75  E-value=3.3e-17  Score=120.69  Aligned_cols=120  Identities=25%  Similarity=0.381  Sum_probs=112.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EK   76 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~   76 (320)
                      |..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++.+.|++       +.
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999877       89


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914           77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (320)
Q Consensus        77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  124 (320)
                      +++.+|.++..+|++++|+..|++++++.| ++..+..++.+....++
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 68888888887765544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.75  E-value=2.4e-18  Score=143.85  Aligned_cols=162  Identities=12%  Similarity=0.098  Sum_probs=131.5

Q ss_pred             HHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHH
Q 020914           18 FKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--------NPQWEKGYFRK   81 (320)
Q Consensus        18 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~l   81 (320)
                      ...|++++|+.+|++|+++        +|..+.++..+|.+|...|++++|+..+++++++        +|....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4568888889999888874        3666889999999999999999999999999988        46678899999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH----HHHHH
Q 020914           82 GCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL----DEFKS  149 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~  149 (320)
                      |.++..+|++++|+..|++++.+        +|....++..+|.++...|++++|+....  ..+......    .+...
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~  169 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYR--RALEIYATRLGPDDPNVA  169 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH--HHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHhcCCCCHHHH
Confidence            99999999999999999999998        56778899999999999999999987753  333322111    34455


Q ss_pred             HHhhhhcchhhhhhHHHHHHHHHHHHHHhHhh
Q 020914          150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHE  181 (320)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~  181 (320)
                      .+...+|.++...|.+..|...+++++...+.
T Consensus       170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            66677788888888888888888887776554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=3.4e-17  Score=123.60  Aligned_cols=117  Identities=30%  Similarity=0.449  Sum_probs=111.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   79 (320)
                      .|.++..++.+|..++..|++++|+..|+++++.+|++   ..++.++|.+|..+|++++|+..++++++++|+++.+++
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            36678999999999999999999999999999999987   899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      .+|.++..+|++++|+..|+++++++|++..++..++.+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999998877664

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.75  E-value=6.4e-17  Score=126.44  Aligned_cols=130  Identities=18%  Similarity=0.247  Sum_probs=125.0

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++..+..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  117 (186)
T 3as5_A           38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG  117 (186)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .++...|++++|+..|+++++.+|+++.++..+|.++...|++++|....
T Consensus       118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A          118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999997664

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.75  E-value=4.3e-17  Score=120.29  Aligned_cols=113  Identities=15%  Similarity=0.164  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRK   81 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l   81 (320)
                      .+++.+|..++..|++++|+..|+++++.+|+++   .+++.+|.++..+|++++|+..|+++++.+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4678999999999999999999999999999988   899999999999999999999999999999999   8999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  120 (320)
                      |.++..+|++++|+..|+++++..|+++.+......+..
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            999999999999999999999999999888766655543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.74  E-value=4.8e-17  Score=142.26  Aligned_cols=125  Identities=23%  Similarity=0.387  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIK----------------QDPSNPTLFSNRAAAFLHLVKLNKALADAETTI   68 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   68 (320)
                      ..+..+..+|..++..|+|++|+..|+++++                .+|.++.++.++|.+|..+|++++|+.++++++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            4567899999999999999999999999998                788889999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 020914           69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ  129 (320)
Q Consensus        69 ~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~  129 (320)
                      +++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++.+++.
T Consensus       301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.74  E-value=8.1e-17  Score=118.96  Aligned_cols=125  Identities=23%  Similarity=0.394  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      .+++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        88 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .|++++|+..|+++++..|.+..++..++.++...|++++|....
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  126 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY  126 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence            999999999999999999999999999999999999999987664

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.74  E-value=2.7e-17  Score=143.94  Aligned_cols=269  Identities=10%  Similarity=-0.018  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----TLFSNRAAAFLHLVKLNKALADAETTISLNPQW------   74 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------   74 (320)
                      .+..+..+|.++...|++++|+..+++++...|...     .++..+|.++...|++++|+..+++++.+.|..      
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   92 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            456788899999999999999999999999887653     368899999999999999999999999986643      


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHH-
Q 020914           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYN--------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD-  145 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-  145 (320)
                      ..++..+|.++...|++++|+..|++++++.        |....++..+|.++...|++++|.....  ..+....... 
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~  170 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR--SGIEVLSSYQP  170 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHTTTSCG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHhhccCc
Confidence            2447889999999999999999999999985        3345678889999999999999987753  2222222110 


Q ss_pred             HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccc---cCh-------hHHhhhcChhHHHHhhhhhhccccCcCC
Q 020914          146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSK---VDA-------KVYFLLDKEKTDTEKYAPIVNVDKAFES  215 (320)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~---~~~-------~~~~~lg~~~~A~~~~~~a~~~~~~~~~  215 (320)
                      ......+..++.++...|.+..+...+++++........   ...       .++...|++++|...+++++...+....
T Consensus       171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  250 (373)
T 1hz4_A          171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH  250 (373)
T ss_dssp             GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch
Confidence            012345556777888888888899888888876544211   000       1366889999999999999987654211


Q ss_pred             c-----cchhhHHHHhhHH--HHHHHHHHhchhCCCCCCCh-hHhhhcccccccccCcccchhhhcccc
Q 020914          216 P-----HTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISY-PQVWRGQGLRKWRHSQQDGFFVQFESP  276 (320)
Q Consensus       216 ~-----~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~  276 (320)
                      .     ..++.++...|++  |+..+++++...+....+.. ..++..+|.++..+|+.+++...+...
T Consensus       251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a  319 (373)
T 1hz4_A          251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA  319 (373)
T ss_dssp             GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            1     1266777788888  99999999977544332222 357888899999999999887766653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.74  E-value=7.9e-17  Score=129.57  Aligned_cols=127  Identities=20%  Similarity=0.251  Sum_probs=118.1

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      +...+..++.+|..++..|++++|+..|++++  +| ++.+++++|.+|..+|++++|+..|+++++++|+++.+++.+|
T Consensus         2 s~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg   78 (213)
T 1hh8_A            2 SLVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRG   78 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            34567889999999999999999999999995  44 7899999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSA----------------EVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .++..+|++++|+..|++++++.|++.                .++..+|.++...|++++|+...
T Consensus        79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  144 (213)
T 1hh8_A           79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL  144 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence            999999999999999999999988877                89999999999999999997664

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.73  E-value=1.8e-17  Score=124.68  Aligned_cols=99  Identities=14%  Similarity=0.258  Sum_probs=90.7

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914           18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL----------NKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus        18 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      -+.+.|++|+..++++++++|+++.+|+++|.++..++++          ++|+..|++||+++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3456799999999999999999999999999999999876          599999999999999999999999999998


Q ss_pred             cc-----------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914           88 ME-----------QYDDALSAFQTALQYNPQSAEVSRKIK  116 (320)
Q Consensus        88 ~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~  116 (320)
                      +|           ++++|+++|++|++++|++...+..+.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            85           899999999999999999976655443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.73  E-value=9.7e-18  Score=127.41  Aligned_cols=108  Identities=10%  Similarity=-0.005  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           25 KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        25 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      .+-..|++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|++++.+
T Consensus         5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914          105 NPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       105 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +|+++.++..+|.++...|++++|+..+
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~  112 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGL  112 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999997764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.72  E-value=4.4e-16  Score=142.87  Aligned_cols=129  Identities=12%  Similarity=-0.047  Sum_probs=111.7

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      +|.+..+|..++.. ...|++++|...|+++++.+|.++.+|..+|..+...|++++|...|++++...| +...|...+
T Consensus         9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~   86 (530)
T 2ooe_A            9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYL   86 (530)
T ss_dssp             CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHH
Confidence            68899999999984 7899999999999999999999999999999999999999999999999999999 678998888


Q ss_pred             H-HHHHccCHHHHHH----HHHHHHhh---CCCCHHHHHHHHHHHHH---------HHHHHHHHHHHH
Q 020914           83 C-ILEAMEQYDDALS----AFQTALQY---NPQSAEVSRKIKRVSQL---------AKDKKRAQEVEN  133 (320)
Q Consensus        83 ~-~~~~~~~~~~A~~----~~~~al~~---~p~~~~~~~~l~~~~~~---------~~~~~~A~~~~~  133 (320)
                      . +....|++++|.+    .|++++..   +|.+..+|..++.+...         .|++++|..++.
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~  154 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ  154 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence            5 4456788887765    88888864   56778899888887665         788888877654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.72  E-value=1.4e-16  Score=147.45  Aligned_cols=130  Identities=11%  Similarity=0.071  Sum_probs=124.5

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++.++..+|.++...|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|+++.+++.+|
T Consensus        19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   98 (568)
T 2vsy_A           19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG   98 (568)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA---KDKKRAQEVE  132 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~  132 (320)
                      .++..+|++++|++.|+++++++|++..++..++.++...   |++++|.+..
T Consensus        99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~  151 (568)
T 2vsy_A           99 HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV  151 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            9999999999999999999999999999999999999999   9999997764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.72  E-value=9e-18  Score=151.86  Aligned_cols=131  Identities=30%  Similarity=0.480  Sum_probs=121.7

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .+..+.++..+|..++..|++++|+..|++|++++|+++.++.++|.+|..+|++++|+..++++++++|+++.+++++|
T Consensus         2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   81 (477)
T 1wao_1            2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   81 (477)
T ss_dssp             CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV--SQLAKDKKRAQEVEN  133 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~A~~~~~  133 (320)
                      .+|..+|++++|++.|+++++++|++..++..++.+  +...|++++|++...
T Consensus        82 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           82 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999988  777899999987754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.72  E-value=1e-16  Score=135.95  Aligned_cols=208  Identities=13%  Similarity=0.092  Sum_probs=147.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN---   71 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---   71 (320)
                      .|..+.++..+|.++...|++++|+.+|++++.+        .|....++..+|.+|..+|++++|+..+++++++.   
T Consensus        65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  144 (311)
T 3nf1_A           65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  144 (311)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence            5778899999999999999999999999999987        35567899999999999999999999999999884   


Q ss_pred             -----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020914           72 -----PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV  138 (320)
Q Consensus        72 -----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  138 (320)
                           |....++..+|.++...|++++|+..|++++++        .|....++..+|.++...|++++|+....  ..+
T Consensus       145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al  222 (311)
T 3nf1_A          145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK--EIL  222 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH--HHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHH
Confidence                 566788999999999999999999999999998        77778899999999999999999987753  222


Q ss_pred             HHHHhHH-----------HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc---ccChhHHhhhcChhHHHHhhh
Q 020914          139 DMVQHLD-----------EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS---KVDAKVYFLLDKEKTDTEKYA  204 (320)
Q Consensus       139 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~---~~~~~~~~~lg~~~~A~~~~~  204 (320)
                      .......           ..........+......+.+..+...+..+....+...   .....+|..+|++++|+..++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  302 (311)
T 3nf1_A          223 TRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE  302 (311)
T ss_dssp             HHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            2221110           00111111112222212222222222232222111111   111238889999999999999


Q ss_pred             hhhccccC
Q 020914          205 PIVNVDKA  212 (320)
Q Consensus       205 ~a~~~~~~  212 (320)
                      +++++.|.
T Consensus       303 ~al~l~~~  310 (311)
T 3nf1_A          303 AAMRSRKQ  310 (311)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHhhc
Confidence            99988764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.71  E-value=4e-17  Score=116.88  Aligned_cols=107  Identities=18%  Similarity=0.185  Sum_probs=103.0

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFR   80 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~   80 (320)
                      .|.++..++.+|.+++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++++|+  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHc-cCHHHHHHHHHHHHhhCCCCH
Q 020914           81 KGCILEAM-EQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        81 lg~~~~~~-~~~~~A~~~~~~al~~~p~~~  109 (320)
                      +|.++..+ |++++|++++++++...|.++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999 999999999999999999763

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.71  E-value=8.6e-16  Score=139.56  Aligned_cols=119  Identities=11%  Similarity=0.067  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914            7 EMSLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGY   78 (320)
Q Consensus         7 a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~   78 (320)
                      +.+++.+|.++..    .+++++|+..|+++++.  .++.+++.+|.+|..    .+++++|+..|+++.+.  +++.++
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~  150 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQ  150 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence            3455555555555    55555555555555543  245555555555555    45555555555555443  345555


Q ss_pred             HHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHHHHH
Q 020914           79 FRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEV  131 (320)
Q Consensus        79 ~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~  131 (320)
                      +.+|.+|..    .+++++|++.|+++++.  .++.++..+|.++..    .+++++|+..
T Consensus       151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  209 (490)
T 2xm6_A          151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQW  209 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence            555555554    45555555555555553  345555555555554    4455555444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.71  E-value=2e-16  Score=133.81  Aligned_cols=203  Identities=7%  Similarity=-0.019  Sum_probs=154.3

Q ss_pred             chHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHhcCCC
Q 020914            3 AEAEEMSLKDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAF----LHL---VKLNKALADAETTISLNPQ   73 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~----~~~---g~~~~A~~~~~~al~l~p~   73 (320)
                      +|++..+|..+|.++...|  ++++++.++.+++..+|++..+|+.++.++    ..+   +++++++.+++++++.+|+
T Consensus        63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk  142 (306)
T 3dra_A           63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK  142 (306)
T ss_dssp             CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred             CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence            6889999999999999999  999999999999999999999999999999    777   8999999999999999999


Q ss_pred             CHHHHHHHHHHHHHccCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhHHHHhHH
Q 020914           74 WEKGYFRKGCILEAMEQYD--DALSAFQTALQYNPQSAEVSRKIKRVSQLAKD------KKRAQEVENIRSNVDMVQHLD  145 (320)
Q Consensus        74 ~~~~~~~lg~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~  145 (320)
                      +..+|..++.++..+|+++  ++++.++++++.+|.+..+|...+.+....+.      ++++++..  ...+...+   
T Consensus       143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~--~~aI~~~p---  217 (306)
T 3dra_A          143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV--KDKIVKCP---  217 (306)
T ss_dssp             CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH--HHHHHHCS---
T ss_pred             CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH--HHHHHhCC---
Confidence            9999999999999999999  99999999999999999999999998877765      66665443  22222211   


Q ss_pred             HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---h----------hHHhhhcChhHHHHhhhhhhc-ccc
Q 020914          146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---A----------KVYFLLDKEKTDTEKYAPIVN-VDK  211 (320)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---~----------~~~~~lg~~~~A~~~~~~a~~-~~~  211 (320)
                       ....+....+.+....|.      ..+...+...+.+.+.   +          .++...|+.++|++.|+.+.+ ++|
T Consensus       218 -~n~SaW~y~~~ll~~~~~------~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dp  290 (306)
T 3dra_A          218 -QNPSTWNYLLGIHERFDR------SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP  290 (306)
T ss_dssp             -SCHHHHHHHHHHHHHTTC------CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred             -CCccHHHHHHHHHHhcCC------ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccCh
Confidence             111222222222222111      1111112222222222   1          277788999999999999996 788


Q ss_pred             CcCCcc
Q 020914          212 AFESPH  217 (320)
Q Consensus       212 ~~~~~~  217 (320)
                      .....|
T Consensus       291 ir~~yW  296 (306)
T 3dra_A          291 IRSNFW  296 (306)
T ss_dssp             GGHHHH
T ss_pred             HHHHHH
Confidence            754444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.71  E-value=1.2e-16  Score=147.88  Aligned_cols=155  Identities=11%  Similarity=0.066  Sum_probs=115.2

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 020914           20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ   99 (320)
Q Consensus        20 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~   99 (320)
                      .|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.+++.+|.+|..+|++++|++.|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhh---hHHHHHHHHHHHHH
Q 020914          100 TALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK---HVFSFVVETMETAV  176 (320)
Q Consensus       100 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~a~  176 (320)
                      ++++++|++..++..+|.++...|++++|++.+.  ..+...    +....+...++.++...   |....+...+++++
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~----p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT--RAHQLL----PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHC----TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhC----CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            9999999999999999999999999999977643  222222    22334555566666666   66777777777666


Q ss_pred             HhHh
Q 020914          177 KSWH  180 (320)
Q Consensus       177 ~~~~  180 (320)
                      +..+
T Consensus       156 ~~~p  159 (568)
T 2vsy_A          156 AQGV  159 (568)
T ss_dssp             HHTC
T ss_pred             hcCC
Confidence            5544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=4.6e-16  Score=143.14  Aligned_cols=179  Identities=14%  Similarity=0.105  Sum_probs=147.1

Q ss_pred             HHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914           15 NEFFKAGNY-LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus        15 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      ......|++ ++|+..+.+++.++|++..+|+.++.++..+|+          +++|+.+++++++.+|++..+|+.+|.
T Consensus        36 ~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w  115 (567)
T 1dce_A           36 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW  115 (567)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            344456655 578999999999999999999999999999999          999999999999999999999999999


Q ss_pred             HHHHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914           84 ILEAME--QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (320)
Q Consensus        84 ~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (320)
                      ++..++  ++++|++.+.++++++|.+..+|...+.+....|.                                     
T Consensus       116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~-------------------------------------  158 (567)
T 1dce_A          116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV-------------------------------------  158 (567)
T ss_dssp             HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-------------------------------------
T ss_pred             HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-------------------------------------
Confidence            999999  77999999999999999999999988776533220                                     


Q ss_pred             hhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHh--------------
Q 020914          162 KHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFL--------------  226 (320)
Q Consensus       162 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~--------------  226 (320)
                                                       .+++++++++++++.+|.....|. +|.++..+              
T Consensus       159 ---------------------------------~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~  205 (567)
T 1dce_A          159 ---------------------------------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE  205 (567)
T ss_dssp             ---------------------------------CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred             ---------------------------------ChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence                                             223445555555555665555554 45444443              


Q ss_pred             hHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccc
Q 020914          227 RQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDG  268 (320)
Q Consensus       227 ~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  268 (320)
                      +.+  |++.+++|+.+     +|.+..+|+.++.++..++.+.+
T Consensus       206 ~~~~eel~~~~~ai~~-----~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          206 NVLLKELELVQNAFFT-----DPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHHHHHHHHHHHHH-----CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             HHHHHHHHHHHHHHhh-----CCCCccHHHHHHHHHhcCCCccc
Confidence            567  99999999999     88889999999999998888665

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.70  E-value=3.6e-16  Score=122.13  Aligned_cols=106  Identities=13%  Similarity=0.186  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHhcCCCCHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAA-FLHLVKL--NKALADAETTISLNPQWEKGYFR   80 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~--~~A~~~~~~al~l~p~~~~~~~~   80 (320)
                      |.++..++.+|.++...|++++|+.+|+++++++|+++.++..+|.+ +...|++  ++|+..++++++++|+++.+++.
T Consensus        41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  120 (177)
T 2e2e_A           41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML  120 (177)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHH
Confidence            33444555555555555555555555555555555555555555555 4445554  55555555555555555555555


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914           81 KGCILEAMEQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~  109 (320)
                      +|.++..+|++++|+..|+++++++|++.
T Consensus       121 la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          121 LASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            55555555555555555555555555443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.70  E-value=4.5e-16  Score=141.41  Aligned_cols=124  Identities=10%  Similarity=0.074  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCH
Q 020914            4 EAEEMSLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWE   75 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~   75 (320)
                      +.++.+++.+|..+..    .+++++|+..|+++++.  .++.+++.+|.+|..    .+++++|+..|+++.+.  +++
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~  111 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP  111 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence            4578899999999999    99999999999999986  579999999999999    99999999999999875  589


Q ss_pred             HHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 020914           76 KGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVEN  133 (320)
Q Consensus        76 ~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~  133 (320)
                      .+++.+|.+|..    .+++++|+..|+++.+.  +++.++..+|.++..    .+++++|++.+.
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  175 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYS  175 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            999999999999    89999999999999875  689999999999987    678888877653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.70  E-value=1.9e-15  Score=128.64  Aligned_cols=121  Identities=6%  Similarity=-0.028  Sum_probs=115.1

Q ss_pred             cchHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHh
Q 020914            2 AAEAEEMSLKDKGNEFFKAGN----------YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK--LNKALADAETTIS   69 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~   69 (320)
                      -+|++..+|..++.++...|.          +++++.++.+++..+|.+..+|+.++.++..+|+  +++++.+++++++
T Consensus        59 ~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~  138 (331)
T 3dss_A           59 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE  138 (331)
T ss_dssp             TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred             HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence            478999999999999988776          7899999999999999999999999999999995  9999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914           70 LNPQWEKGYFRKGCILEAMEQ-YDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (320)
Q Consensus        70 l~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  122 (320)
                      ++|.|..+|..++.+....|. ++++++++.++++.+|.+..+|..++.+....
T Consensus       139 ~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          139 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999 69999999999999999999999999988777

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.70  E-value=3.8e-16  Score=127.07  Aligned_cols=129  Identities=12%  Similarity=0.141  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHH------------------ccCHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT---LFSNRAAAFLH------------------LVKLNKALA   62 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~------------------~g~~~~A~~   62 (320)
                      |....+++.+|.+++..|++++|+..|+++++.+|+++.   +++.+|.++..                  .|++++|+.
T Consensus        38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  117 (225)
T 2yhc_A           38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS  117 (225)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence            344689999999999999999999999999999999864   89999999986                  579999999


Q ss_pred             HHHHHHhcCCCCHHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHH
Q 020914           63 DAETTISLNPQWEKGY-----------------FRKGCILEAMEQYDDALSAFQTALQYNPQSA---EVSRKIKRVSQLA  122 (320)
Q Consensus        63 ~~~~al~l~p~~~~~~-----------------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~  122 (320)
                      .|+++++.+|+++.++                 +.+|.+|...|++++|+..|+++++..|+++   .++..+|.++...
T Consensus       118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  197 (225)
T 2yhc_A          118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM  197 (225)
T ss_dssp             HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence            9999999999987554                 6789999999999999999999999999986   6799999999999


Q ss_pred             HHHHHHHHHH
Q 020914          123 KDKKRAQEVE  132 (320)
Q Consensus       123 ~~~~~A~~~~  132 (320)
                      |++++|++..
T Consensus       198 g~~~~A~~~~  207 (225)
T 2yhc_A          198 QMNAQAEKVA  207 (225)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCcHHHHHHH
Confidence            9999997664

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=9.3e-17  Score=121.00  Aligned_cols=105  Identities=9%  Similarity=-0.008  Sum_probs=98.6

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914           28 ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ  107 (320)
Q Consensus        28 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  107 (320)
                      ..|++++.++|++..+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914          108 SAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       108 ~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      ++.++..+|.++...|++++|+..+
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~  109 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGF  109 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999997764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.68  E-value=2.8e-17  Score=119.57  Aligned_cols=95  Identities=14%  Similarity=0.155  Sum_probs=87.0

Q ss_pred             HcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 020914           19 KAGNYLKAAALYTQAIKQ---DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL   95 (320)
Q Consensus        19 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~   95 (320)
                      ..|++++|+..|++++++   +|+++.++.++|.+|..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   68889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHH
Q 020914           96 SAFQTALQYNPQSAEVSR  113 (320)
Q Consensus        96 ~~~~~al~~~p~~~~~~~  113 (320)
                      ..|+++++..|+++.+..
T Consensus        82 ~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHH
Confidence            999999999999987654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.68  E-value=2.8e-16  Score=137.99  Aligned_cols=203  Identities=11%  Similarity=0.020  Sum_probs=150.5

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--   73 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--   73 (320)
                      .|..+.+++.+|.++...|++++|+.++++|+++.+.       .+.++.++|.+|..+|++++|+..|++++++.+.  
T Consensus       137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~  216 (378)
T 3q15_A          137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ  216 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence            3567889999999999999999999999999987443       2568999999999999999999999999997432  


Q ss_pred             ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH
Q 020914           74 ----WEKGYFRKGCILEAMEQYDDALSAFQTALQ-----YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL  144 (320)
Q Consensus        74 ----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  144 (320)
                          ...++.++|.+|..+|++++|+.+|+++++     .+|....++..+|.++...|++++|+....  ..+......
T Consensus       217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~  294 (378)
T 3q15_A          217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE--EGLDHITAR  294 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCCTT
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHc
Confidence                356899999999999999999999999999     788889999999999999999999987753  222221110


Q ss_pred             H-HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcccc---------ChhHHhhhcChhHHHHhhhhhhcccc
Q 020914          145 D-EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV---------DAKVYFLLDKEKTDTEKYAPIVNVDK  211 (320)
Q Consensus       145 ~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~---------~~~~~~~lg~~~~A~~~~~~a~~~~~  211 (320)
                      . +........++..+...+..    ..+++|+..+.+....         ...+|...|++++|+..|++++++.+
T Consensus       295 ~~~~~~~~~~~l~~ly~~~~~~----~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  367 (378)
T 3q15_A          295 SHKFYKELFLFLQAVYKETVDE----RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE  367 (378)
T ss_dssp             CCSCHHHHHHHHHHHHSSSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            0 00001112223333333321    2344444444432211         11288999999999999999998654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.68  E-value=4.5e-15  Score=125.68  Aligned_cols=173  Identities=10%  Similarity=-0.011  Sum_probs=130.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISLNPQW---   74 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---   74 (320)
                      |.....+...+..++..|+|++|+..+.++++..|...      ..++.+|.++...|++++|+..+++++.+.+..   
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            56677888999999999999999999999999888754      457789999999999999999999999876543   


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh-
Q 020914           75 ---EKGYFRKGCILEAMEQYDDALSAFQTAL---QYNPQSA----EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQH-  143 (320)
Q Consensus        75 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-  143 (320)
                         ..++..+|.+|..+|++++|+.+|++++   +..|++.    .++.++|.++...|++++|+....  ..+..... 
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~--kal~~~~~~  229 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN--KAIEISCRI  229 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHH--HHHHHHHhc
Confidence               5689999999999999999999999999   5566643    689999999999999999987753  22222211 


Q ss_pred             -HHHHHHHHhhhhcchhhhhhHHHHH-HHHHHHHHHh
Q 020914          144 -LDEFKSEMSEKYGAEECWKHVFSFV-VETMETAVKS  178 (320)
Q Consensus       144 -~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~a~~~  178 (320)
                       .......++..+|.++...|.++.| ...+++|+..
T Consensus       230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence             0011233444455555555555555 4444544443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.68  E-value=5.8e-17  Score=140.18  Aligned_cols=125  Identities=21%  Similarity=0.303  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----------------TLFSNRAAAFLHLVKLNKALADAET   66 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~   66 (320)
                      +..+..++.+|..++..|+|++|+..|++++.+.|++.                 .+++++|.+|..+|++++|+..|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            56788999999999999999999999999999999876                 4999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-HHHHHH
Q 020914           67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA-KDKKRA  128 (320)
Q Consensus        67 al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A  128 (320)
                      +++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+.... +..+++
T Consensus       256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999885443 334444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.67  E-value=3.3e-16  Score=122.41  Aligned_cols=129  Identities=12%  Similarity=0.047  Sum_probs=115.2

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFL-HLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      .|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. ..+...+|+..++++++++|+++.+++.+
T Consensus        36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l  114 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL  114 (176)
T ss_dssp             HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH
Confidence            588899999999999999999999999999999999 8877776665533 33444568999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      |.++...|++++|+..|+++++++|+.  ..++..++.++...|+.++|...+
T Consensus       115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A          115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            999999999999999999999999986  669999999999999999886654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.66  E-value=4.3e-16  Score=121.67  Aligned_cols=117  Identities=12%  Similarity=0.108  Sum_probs=107.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHccCH--H
Q 020914           16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI-LEAMEQY--D   92 (320)
Q Consensus        16 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~-~~~~~~~--~   92 (320)
                      .+...|++++|+..++++++.+|.++.++..+|.+|...|++++|+..|+++++++|+++.++..+|.+ +...|++  +
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            355788999999999999999999999999999999999999999999999999999999999999999 8899999  9


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           93 DALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        93 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +|+..|+++++++|++..++..+|.++...|++++|+...
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  138 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW  138 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHH
Confidence            9999999999999999999999999999999999997764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.66  E-value=1.2e-15  Score=130.41  Aligned_cols=196  Identities=11%  Similarity=-0.004  Sum_probs=153.1

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      +|+-..++.....+....+..++|+..+.++|.++|++..+|+.++.++..+| .+++++.+++++|..+|++..+|+.+
T Consensus        50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR  129 (349)
T 3q7a_A           50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR  129 (349)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            34555666666666667777789999999999999999999999999999999 59999999999999999999999999


Q ss_pred             HHHHHHc-c-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchh
Q 020914           82 GCILEAM-E-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE  159 (320)
Q Consensus        82 g~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (320)
                      +.++..+ + +++++++.+.++++.+|.+..+|...+.+....+.++.+                            .  
T Consensus       130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~----------------------------~--  179 (349)
T 3q7a_A          130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI----------------------------S--  179 (349)
T ss_dssp             HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC----------------------------C--
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc----------------------------c--
Confidence            9999998 8 999999999999999999999999999887666544310                            0  


Q ss_pred             hhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhH-------H--
Q 020914          160 CWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQ-------Y--  229 (320)
Q Consensus       160 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~-------~--  229 (320)
                               ...                        ..++++.++++++++|.+...|. +|.++..+++       +  
T Consensus       180 ---------~~~------------------------~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~e  226 (349)
T 3q7a_A          180 ---------EAQ------------------------WGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQD  226 (349)
T ss_dssp             ---------HHH------------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred             ---------hhh------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHH
Confidence                     001                        12344444555555555544444 4444444332       4  


Q ss_pred             HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcc
Q 020914          230 ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQ  266 (320)
Q Consensus       230 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~  266 (320)
                      +++++++++.+     +|.+..+|..+..++.+.|..
T Consensus       227 ELe~~~~aI~~-----~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          227 ELIYILKSIHL-----IPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCC
Confidence            99999999988     888899998877777666654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=2.5e-15  Score=110.51  Aligned_cols=95  Identities=13%  Similarity=0.170  Sum_probs=91.0

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 020914           38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR  117 (320)
Q Consensus        38 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  117 (320)
                      |..+..+..+|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.++..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            44578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 020914          118 VSQLAKDKKRAQEVE  132 (320)
Q Consensus       118 ~~~~~~~~~~A~~~~  132 (320)
                      ++...|++++|+...
T Consensus        81 ~~~~~~~~~~A~~~~   95 (126)
T 3upv_A           81 AQIAVKEYASALETL   95 (126)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHH
Confidence            999999999997764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.64  E-value=5.3e-15  Score=135.66  Aligned_cols=129  Identities=16%  Similarity=0.051  Sum_probs=111.3

Q ss_pred             chHHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFK-------AGNYL-------KAAALYTQAIK-QDPSNPTLFSNRAAAFLHLVKLNKALADAETT   67 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   67 (320)
                      .|.++..|+..|..+..       .|+++       +|+..|++|++ ++|+++.+|..+|.++...|++++|...|+++
T Consensus       268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a  347 (530)
T 2ooe_A          268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  347 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            47788999999999986       79987       99999999997 89999999999999999999999999999999


Q ss_pred             HhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHHHHHHHHHHH
Q 020914           68 ISLNPQWE-KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS-QLAKDKKRAQEV  131 (320)
Q Consensus        68 l~l~p~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~~~~A~~~  131 (320)
                      ++++|+++ .+|..+|.++.+.|++++|++.|++|++..|.....+...+.+. ...|+.++|..+
T Consensus       348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~  413 (530)
T 2ooe_A          348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  413 (530)
T ss_dssp             HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence            99999985 69999999999999999999999999999998777766554432 234555555443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.64  E-value=1.2e-16  Score=138.18  Aligned_cols=144  Identities=9%  Similarity=0.047  Sum_probs=121.0

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 020914           19 KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---------------EKGYFRKGC   83 (320)
Q Consensus        19 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~   83 (320)
                      ..+++++|+..|+++++.+|..+.++..+|.++..+|++++|+..|+++++++|++               ..+|+++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34667788889999999999999999999999999999999999999999999998               699999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH  163 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (320)
                      +|..+|++++|+.+|+++++++|++..++..+|.++...|++++|+..+  ...+...    +....+...++.++...+
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~--~~al~l~----P~~~~a~~~l~~~~~~~~  278 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF--QKVLQLY----PNNKAAKTQLAVCQQRIR  278 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH--HHHHHHC----SSCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH--HHHHHHC----CCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999997764  2333322    223334445555555555


Q ss_pred             HHHHH
Q 020914          164 VFSFV  168 (320)
Q Consensus       164 ~~~~a  168 (320)
                      ....+
T Consensus       279 ~~~~a  283 (336)
T 1p5q_A          279 RQLAR  283 (336)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.64  E-value=7.1e-16  Score=113.84  Aligned_cols=92  Identities=13%  Similarity=0.114  Sum_probs=80.9

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-------HH
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-------VS  112 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~  112 (320)
                      .+.++.++|.+++..|+|++|+.+|++|++++|+++.+|.++|.+|..+|++++|++.|+++++++|++..       ++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999987743       56


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 020914          113 RKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus       113 ~~l~~~~~~~~~~~~A~~~  131 (320)
                      ..+|.++...|++++|++.
T Consensus        87 ~~lg~~~~~~~~~~~A~~~  105 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQW  105 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHH
Confidence            6666666666666666554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.64  E-value=2.7e-15  Score=131.19  Aligned_cols=235  Identities=11%  Similarity=0.022  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLN--------   71 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------   71 (320)
                      .+.++..+|.++...|++++|+..+++++.+.|..      ..++.++|.++..+|++++|+..+++++.+.        
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            34578899999999999999999999999876543      2457899999999999999999999999875        


Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH--
Q 020914           72 PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-----AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL--  144 (320)
Q Consensus        72 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--  144 (320)
                      |....++..+|.++...|++++|+..+++++.+.|..     ..++..++.++...|++++|......  ........  
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~--a~~~~~~~~~  209 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR--LENLLGNGKY  209 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHH--HHHHHTTSCC
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--HHHHHhccCc
Confidence            3346688899999999999999999999999998753     46788999999999999999877532  22111110  


Q ss_pred             -HHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcccc-------ChhHHhhhcChhHHHHhhhhhhccccCcC--
Q 020914          145 -DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV-------DAKVYFLLDKEKTDTEKYAPIVNVDKAFE--  214 (320)
Q Consensus       145 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-------~~~~~~~lg~~~~A~~~~~~a~~~~~~~~--  214 (320)
                       ...........+..+...|....+...+++++.........       ...++...|++++|...++.++.+.+...  
T Consensus       210 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~  289 (373)
T 1hz4_A          210 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM  289 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcch
Confidence             00011111111222334444555555444443221110000       01177788999999999999988754421  


Q ss_pred             -----CccchhhHHHHhhHH--HHHHHHHHhchhC
Q 020914          215 -----SPHTHGSCFQFLRQY--ADDSFSSAACLVA  242 (320)
Q Consensus       215 -----~~~~~g~~~~~~~~~--A~~~~~~al~~~~  242 (320)
                           .....|.++...|++  |...|++++.+.+
T Consensus       290 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          290 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence                 122257777788888  9999999998743

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.63  E-value=1.8e-14  Score=122.85  Aligned_cols=165  Identities=12%  Similarity=0.087  Sum_probs=96.1

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHH
Q 020914           46 NRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSR  113 (320)
Q Consensus        46 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~  113 (320)
                      ..|.+|..+|++++|+.+|.+++.+.+..      ..++.++|.+|..+|++++|+.+|++++++.+..      ..++.
T Consensus        41 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~  120 (307)
T 2ifu_A           41 KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD  120 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            33556666666666666666666664422      3456666666666666666666666666663321      34556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH--HHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh----
Q 020914          114 KIKRVSQLAKDKKRAQEVENIRSNVDMVQHL--DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA----  187 (320)
Q Consensus       114 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~----  187 (320)
                      ++|.++.. |++++|+..+  ...+......  ......++..+|.++...|.+..|+..+++++...++......    
T Consensus       121 ~lg~~~~~-g~~~~A~~~~--~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  197 (307)
T 2ifu_A          121 RAGKLMEP-LDLSKAVHLY--QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK  197 (307)
T ss_dssp             HHHHHHTT-TCHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHc-CCHHHHHHHH--HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence            66666665 6666665553  2222222211  1122344555566666666666666666666665544321000    


Q ss_pred             -----hHHhhhcChhHHHHhhhhhhccccCcC
Q 020914          188 -----KVYFLLDKEKTDTEKYAPIVNVDKAFE  214 (320)
Q Consensus       188 -----~~~~~lg~~~~A~~~~~~a~~~~~~~~  214 (320)
                           .++..+|++++|+..|++++ +.|...
T Consensus       198 ~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          198 CIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence                 16667789999999999999 888754

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.63  E-value=2.7e-14  Score=121.56  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=104.9

Q ss_pred             HHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914           17 FFKAGNYL-KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus        17 ~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      ....|++. +|+..+.++|.++|++..+|+.++.++..++.          +++++.+++.++..+|++..+|+.++.++
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL  118 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  118 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34677776 89999999999999999999999999999887          78999999999999999999999999999


Q ss_pred             HHccC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH-HHHHHHH
Q 020914           86 EAMEQ--YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD-KKRAQEV  131 (320)
Q Consensus        86 ~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~  131 (320)
                      ..+++  +++++.++.++++++|.+..+|...+.+....|. ++++++.
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            99995  8999999999999999999999999999888877 4666554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.63  E-value=8.8e-15  Score=117.50  Aligned_cols=105  Identities=12%  Similarity=0.148  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----------
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE----------   75 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----------   75 (320)
                      ++.+++.+|.++...|++++|+..|+++++++|.++.+++++|.+|..+|++++|+..|++++++.|++.          
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            5679999999999999999999999999999999999999999999999999999999999999988877          


Q ss_pred             ------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 020914           76 ------KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE  110 (320)
Q Consensus        76 ------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  110 (320)
                            .+++.+|.++..+|++++|+..|+++++++|++..
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence                  99999999999999999999999999999998743

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.63  E-value=2.9e-15  Score=127.81  Aligned_cols=171  Identities=15%  Similarity=0.089  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------C
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ------W   74 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~   74 (320)
                      ...+...|.++...|++++|+.+|.+++++.+..      +.++.++|.+|..+|++++|+.+|++++++.+.      .
T Consensus        36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~  115 (307)
T 2ifu_A           36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA  115 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            3455666899999999999999999999886533      578999999999999999999999999998543      2


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH--HH
Q 020914           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL--DE  146 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~  146 (320)
                      ..++.++|.+|.. |++++|+.+|++++++.|..      ..++.++|.++...|++++|+..+.  ..+...+..  ..
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~  192 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQ--KEKSMYKEMENYP  192 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHcCChh
Confidence            5689999999999 99999999999999998754      5789999999999999999987753  333332221  11


Q ss_pred             HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh
Q 020914          147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK  188 (320)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~  188 (320)
                      .....       +...+......+.+++|+..+.+++ +.|.
T Consensus       193 ~~~~~-------~~~~g~~~~~~g~~~~A~~~~~~al-~~p~  226 (307)
T 2ifu_A          193 TCYKK-------CIAQVLVQLHRADYVAAQKCVRESY-SIPG  226 (307)
T ss_dssp             HHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred             HHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence            11222       3333444444555666666666666 6663

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.62  E-value=1.3e-15  Score=128.61  Aligned_cols=130  Identities=8%  Similarity=-0.018  Sum_probs=123.2

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|+++.+++.+|.++...|++++|+..+++++..+|+....+...+..+...++.++|+..+++++.++|+++.+++.+|
T Consensus       147 ~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la  226 (287)
T 3qou_A          147 SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA  226 (287)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence            58889999999999999999999999999999999988888888888899999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .++...|++++|+..|+++++.+|++  ..++..++.++...|+.++|...+
T Consensus       227 ~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~  278 (287)
T 3qou_A          227 LQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY  278 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence            99999999999999999999999999  899999999999999988886553

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.62  E-value=1.1e-14  Score=123.26  Aligned_cols=174  Identities=10%  Similarity=0.012  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT------LFSNRAAAFLHLVKLNKALADAETTISLNPQW----   74 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----   74 (320)
                      .....+...+..++..|++++|+..++++++..+..+.      .+..+|.++...|++++|+..|++++.+.+..    
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  152 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence            44556677789999999999999999999998877654      34468999999999999999999999975442    


Q ss_pred             --HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH-
Q 020914           75 --EKGYFRKGCILEAMEQYDDALSAFQTALQYN-------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL-  144 (320)
Q Consensus        75 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-  144 (320)
                        ..++.++|.+|..+|++++|+.+|+++++..       +....++.++|.++...|++++|+....  ..+...... 
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~--~al~~~~~~~  230 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN--KAIEISCRIN  230 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHcC
Confidence              3479999999999999999999999999632       2234588999999999999999987743  333322221 


Q ss_pred             -HHHHHHHhhhhcchhhhhh-HHHHHHHHHHHHHHhHh
Q 020914          145 -DEFKSEMSEKYGAEECWKH-VFSFVVETMETAVKSWH  180 (320)
Q Consensus       145 -~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~  180 (320)
                       ......++..+|.++...| .++.|...+++|+..+.
T Consensus       231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence             1223445555666666666 34666666666665544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=3.8e-15  Score=137.09  Aligned_cols=120  Identities=5%  Similarity=-0.032  Sum_probs=115.5

Q ss_pred             chHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc
Q 020914            3 AEAEEMSLKDKGNEFFKAGN----------YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--KLNKALADAETTISL   70 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l   70 (320)
                      +|++..+|+.+|.++...|+          +++|+.+++++++.+|++..+|+.++.++..+|  ++++|++++++++++
T Consensus        59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~  138 (567)
T 1dce_A           59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  138 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence            68899999999999999998          999999999999999999999999999999999  779999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914           71 NPQWEKGYFRKGCILEAME-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA  122 (320)
Q Consensus        71 ~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  122 (320)
                      +|.+..+|..+|.++..+| .+++++++++++++.+|.+..+|...+.++...
T Consensus       139 d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            9999999999999999999 999999999999999999999999999887654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.60  E-value=2.3e-14  Score=104.67  Aligned_cols=91  Identities=16%  Similarity=0.134  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  121 (320)
                      ..++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020914          122 AKDKKRAQEVE  132 (320)
Q Consensus       122 ~~~~~~A~~~~  132 (320)
                      .|++++|+...
T Consensus        98 ~g~~~~A~~~~  108 (121)
T 1hxi_A           98 EHNANAALASL  108 (121)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            99999997664

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.60  E-value=1.1e-15  Score=126.57  Aligned_cols=215  Identities=11%  Similarity=0.014  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR-------AAAFLHLVKLNKALADAETTISLNPQWEKG   77 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~l~p~~~~~   77 (320)
                      ++...++..|.-+ ..+++.+|...|.++++++|..+.+|.++       +.++..+++..+++..+++++.+.|+...+
T Consensus         5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a   83 (282)
T 4f3v_A            5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA   83 (282)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred             HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence            4567888889886 68999999999999999999999999999       999999999999999999999998875444


Q ss_pred             ---------------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020914           78 ---------------------YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS  136 (320)
Q Consensus        78 ---------------------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  136 (320)
                                           +..++.++...|+|++|.+.|+.++...|++. +.+.+|.++...+++++|+..+.  .
T Consensus        84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~--~  160 (282)
T 4f3v_A           84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVK--S  160 (282)
T ss_dssp             EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHT--T
T ss_pred             hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHH--H
Confidence                                 44588999999999999999999999999988 99999999999999999977643  1


Q ss_pred             hhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccc--cCc-
Q 020914          137 NVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVD--KAF-  213 (320)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~--~~~-  213 (320)
                      ........  ....+...+|.                               ++..+|++++|+..|++++.-.  |.. 
T Consensus       161 a~~~~d~~--~~~~a~~~LG~-------------------------------al~~LG~~~eAl~~l~~a~~g~~~P~~~  207 (282)
T 4f3v_A          161 AGKWPDKF--LAGAAGVAHGV-------------------------------AAANLALFTEAERRLTEANDSPAGEACA  207 (282)
T ss_dssp             GGGCSCHH--HHHHHHHHHHH-------------------------------HHHHTTCHHHHHHHHHHHHTSTTTTTTH
T ss_pred             hhccCCcc--cHHHHHHHHHH-------------------------------HHHHCCCHHHHHHHHHHHhcCCCCcccc
Confidence            11100000  00111111122                               5567788888888888777533  331 


Q ss_pred             -CCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccc
Q 020914          214 -ESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWR  262 (320)
Q Consensus       214 -~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  262 (320)
                       ......|.++..+|+.  |...|++++..     +|. +.++..+..--+.
T Consensus       208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~-----~P~-~~~~~aL~~~~~~  253 (282)
T 4f3v_A          208 RAIAWYLAMARRSQGNESAAVALLEWLQTT-----HPE-PKVAAALKDPSYR  253 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----SCC-HHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCc-HHHHHHHhCCCCC
Confidence             1223488899999998  99999999988     777 7777766654333

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.60  E-value=8.8e-16  Score=109.94  Aligned_cols=95  Identities=24%  Similarity=0.334  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYF   79 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~   79 (320)
                      ++.+++.+|.+++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999999998      88999


Q ss_pred             HHHHHHHHccCHHHHHHHHHH
Q 020914           80 RKGCILEAMEQYDDALSAFQT  100 (320)
Q Consensus        80 ~lg~~~~~~~~~~~A~~~~~~  100 (320)
                      .+|.++..+|++++|+..|++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999998888776654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.59  E-value=1.2e-14  Score=122.41  Aligned_cols=195  Identities=11%  Similarity=0.048  Sum_probs=136.2

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 020914           38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR  117 (320)
Q Consensus        38 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  117 (320)
                      |.++..+..+|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-----HHhh
Q 020914          118 VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----VYFL  192 (320)
Q Consensus       118 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----~~~~  192 (320)
                      ++...|++++|+..+.  ..+...+.    .   ...++............ ......   -.....-.+.     ....
T Consensus        81 ~~~~~g~~~~A~~~~~--~al~l~p~----~---~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~i~~~l~~l~  147 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQ--RAYSLAKE----Q---RLNFGDDIPSALRIAKK-KRWNSI---EERRIHQESELHSYLTRLI  147 (281)
T ss_dssp             HHHHTTCHHHHHHHHH--HHHHHHHH----T---TCCCCSHHHHHHHHHHH-HHHHHH---HHTCCCCCCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHH--HHHHhCcc----c---hhhHHHHHHHHHHHHHH-HHHHHH---HHHHHhhhHHHHHHHHHHH
Confidence            9999999999987643  22222221    1   00111110000000000 111110   1111111121     2334


Q ss_pred             hcChhHHHHhhhhhhccccCcCCccc-hhhHHHHh-hHH--HHHHHHHHhchhCCCC
Q 020914          193 LDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFL-RQY--ADDSFSSAACLVAPKS  245 (320)
Q Consensus       193 lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~-~~~--A~~~~~~al~~~~~~~  245 (320)
                      .|++++|++.++++++++|....... ++..+... +.+  |.+.|+++.+..+...
T Consensus       148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~  204 (281)
T 2c2l_A          148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRD  204 (281)
T ss_dssp             HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCC
T ss_pred             HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Confidence            78999999999999999986532222 34444444 445  8888988886544333

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.59  E-value=1.4e-14  Score=109.18  Aligned_cols=92  Identities=15%  Similarity=0.074  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-------WEK-----GYFRKGCILEAMEQYDDALSAFQTALQY----  104 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-------~~~-----~~~~lg~~~~~~~~~~~A~~~~~~al~~----  104 (320)
                      +..+.++|..+..+|+|++|+..|++||+++|+       +..     +|.++|.++..+|+|++|+.+|+++|++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            577899999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHHHHHHHHHHHH
Q 020914          105 ---NPQSAEVS----RKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       105 ---~p~~~~~~----~~l~~~~~~~~~~~~A~~~~  132 (320)
                         +|++..+|    +++|.++..+|++++|+..+
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y  125 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF  125 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence               99999999    99999999999999997664

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.59  E-value=3.3e-14  Score=104.70  Aligned_cols=106  Identities=23%  Similarity=0.459  Sum_probs=101.5

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|
T Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  110 (136)
T 2fo7_A           31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG  110 (136)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQS  108 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~  108 (320)
                      .++...|++++|+..|++++..+|++
T Consensus       111 ~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          111 NAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999864

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.58  E-value=4.7e-14  Score=101.85  Aligned_cols=99  Identities=12%  Similarity=0.177  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           25 KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        25 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      +|+..|+++++.+|+++.+++.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|++++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC--CHHHHHHHHHHHHHHH
Q 020914          105 NPQ--SAEVSRKIKRVSQLAK  123 (320)
Q Consensus       105 ~p~--~~~~~~~l~~~~~~~~  123 (320)
                      +|.  +......+......++
T Consensus        83 ~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           83 AQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHhc
Confidence            884  4455555554444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.58  E-value=7e-14  Score=103.95  Aligned_cols=98  Identities=16%  Similarity=0.097  Sum_probs=92.5

Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914           35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (320)
Q Consensus        35 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  114 (320)
                      ..+|.++..++.+|.++...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 020914          115 IKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       115 l~~~~~~~~~~~~A~~~~  132 (320)
                      +|.++...|++++|+...
T Consensus        83 l~~~~~~~~~~~~A~~~~  100 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANL  100 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHH
Confidence            999999999999997764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.57  E-value=6.9e-14  Score=111.13  Aligned_cols=116  Identities=12%  Similarity=0.105  Sum_probs=90.6

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHccC
Q 020914           17 FFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS------LNPQWEKGYFRKGCILEAMEQ   90 (320)
Q Consensus        17 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------l~p~~~~~~~~lg~~~~~~~~   90 (320)
                      ++..|++++|.+.++......+..+.++..+|.++...|++++|+..+++++.      ..|....++..+|.++..+|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            45688999999966555443335678899999999999999999999999998      444567789999999999999


Q ss_pred             HHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           91 YDDALSAFQTALQY---NPQS----AEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        91 ~~~A~~~~~~al~~---~p~~----~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +++|+..|++++++   .+++    ..++..+|.++...|++++|+...
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  130 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY  130 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999988   4433    456888899999999999987764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.57  E-value=3.1e-14  Score=109.67  Aligned_cols=96  Identities=15%  Similarity=0.088  Sum_probs=91.8

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914           37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (320)
Q Consensus        37 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  116 (320)
                      ++.++..++.+|.++...|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 020914          117 RVSQLAKDKKRAQEVE  132 (320)
Q Consensus       117 ~~~~~~~~~~~A~~~~  132 (320)
                      .++...|++++|+..+
T Consensus        87 ~~~~~~g~~~~A~~~~  102 (164)
T 3sz7_A           87 LARFDMADYKGAKEAY  102 (164)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHH
Confidence            9999999999997764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.56  E-value=2.1e-13  Score=132.58  Aligned_cols=233  Identities=9%  Similarity=-0.011  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----------
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-----------   74 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-----------   74 (320)
                      .+..|+.+|..+...|++++|+.+|.+|     +++..|...|.++.++|+|++|+++|..|.+..++.           
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 1178 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHH
Confidence            4667888888888888888888888775     677888888888888888888888888877665331           


Q ss_pred             ----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020914           75 ----------------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV  138 (320)
Q Consensus        75 ----------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  138 (320)
                                      ...+..+|..++..|+|++|+..|.++        ..|..++.++..+|++++|++........
T Consensus      1179 Kl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1179 KTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred             hhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence                            112334444444444444444444443        24444444444444444444332211111


Q ss_pred             HHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhcccc
Q 020914          139 DMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVDK  211 (320)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~~~~  211 (320)
                                 ..+...+.+...       .+.|..|..+.. .+..+|.       .|...|.+++|+..++.++.+++
T Consensus      1251 -----------~aWkev~~acve-------~~Ef~LA~~cgl-~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A         1251 -----------RTWKEVCFACVD-------GKEFRLAQMCGL-HIVVHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred             -----------HHHHHHHHHHhh-------hhHHHHHHHHHH-hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence                       001111111111       222333333222 2333443       78889999999999999999997


Q ss_pred             CcCCccc-hhhHHHHhh--HH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchh
Q 020914          212 AFESPHT-HGSCFQFLR--QY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFF  270 (320)
Q Consensus       212 ~~~~~~~-~g~~~~~~~--~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  270 (320)
                      .....+. +|.++...+  +.  +++.|...+.+.+--..-..+..|......|.+-|+++.|.
T Consensus      1312 aH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1312 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             hHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            7655554 676665433  33  89999988865111111144667888888888888888776

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.56  E-value=1.4e-13  Score=105.65  Aligned_cols=92  Identities=14%  Similarity=0.076  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  120 (320)
                      +..+..+|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020914          121 LAKDKKRAQEVE  132 (320)
Q Consensus       121 ~~~~~~~A~~~~  132 (320)
                      ..|++++|+...
T Consensus        93 ~~~~~~~A~~~~  104 (166)
T 1a17_A           93 ALGKFRAALRDY  104 (166)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HhccHHHHHHHH
Confidence            999999998764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.54  E-value=5.6e-15  Score=117.61  Aligned_cols=123  Identities=9%  Similarity=0.041  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--------------
Q 020914           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE--------------   75 (320)
Q Consensus        10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--------------   75 (320)
                      ....+......|+++.|.+.+.......+..+..+..+|.++...|++++|+..|++++.+.|+++              
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~   86 (198)
T 2fbn_A            7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI   86 (198)
T ss_dssp             ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence            344566677788888888888877777777789999999999999999999999999999999887              


Q ss_pred             --HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           76 --KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        76 --~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                        .++.++|.++..+|++++|+.+|+++++++|++..++..+|.++...|++++|+..+
T Consensus        87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  145 (198)
T 2fbn_A           87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL  145 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence              899999999999999999999999999999999999999999999999999997764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.54  E-value=2.2e-15  Score=135.54  Aligned_cols=113  Identities=11%  Similarity=0.108  Sum_probs=106.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q 020914           20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---------------EKGYFRKGCI   84 (320)
Q Consensus        20 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~~   84 (320)
                      .+++++|+..|+++++.+|..+.++.++|.++..+|+|++|+..|++|++++|++               ..+|+++|.+
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            4566788888888888899999999999999999999999999999999999998               6999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      |..+|++++|+.+|+++++++|++..+++.+|.++...|++++|+..+
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~  374 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF  374 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHH
Confidence            999999999999999999999999999999999999999999997764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.54  E-value=1.4e-13  Score=94.63  Aligned_cols=84  Identities=20%  Similarity=0.358  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      .++..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHc
Q 020914           85 LEAM   88 (320)
Q Consensus        85 ~~~~   88 (320)
                      +..+
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.53  E-value=2.1e-13  Score=132.57  Aligned_cols=234  Identities=9%  Similarity=0.022  Sum_probs=138.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc----------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914           13 KGNEFFKAGNYLKAAALYTQAIKQ----------------------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL   70 (320)
Q Consensus        13 ~g~~~~~~g~~~~A~~~~~~al~~----------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (320)
                      .|.++...|.+++|..+|+++-..                      ..+.+.+|+.+|.++...|++++|+.+|.++   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            378888888888888888776211                      1344677777777777777777777777665   


Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHH
Q 020914           71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE  150 (320)
Q Consensus        71 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  150 (320)
                        +++..|...|.++.++|++++|+++|..|.+..++. .+...+|.++...+++++...+.   ...         ...
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rleele~fI---~~~---------n~a 1196 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAELEEFI---NGP---------NNA 1196 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHHHHHHH---hCC---------CHH
Confidence              667777777777777777777777777777766432 12223566665555555432221   000         111


Q ss_pred             HhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhcccc-------------------
Q 020914          151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDK-------------------  211 (320)
Q Consensus       151 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~-------------------  211 (320)
                      -+...|+.....|.++.|...|.+|-. |.+..    .++..+|++++|++.+.++.....                   
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~n-y~rLA----~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVSN-FGRLA----STLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhhH-HHHHH----HHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHH
Confidence            122345555555555555555554421 11111    277788888888888888765433                   


Q ss_pred             -------CcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhccccccc--ccCcccchhhhcc
Q 020914          212 -------AFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKW--RHSQQDGFFVQFE  274 (320)
Q Consensus       212 -------~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~  274 (320)
                             ........+.+|...|.|  |+..+++++.+     ++.....|..+|..+.  +-++..+....|.
T Consensus      1272 cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L-----eraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1272 CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-----ERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred             HHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                   000111245566677777  99999999988     5556677766665543  3334444443333

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.53  E-value=5.9e-14  Score=113.04  Aligned_cols=124  Identities=15%  Similarity=0.123  Sum_probs=111.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhcCCCCHHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV----KLNKALADAETTISLNPQWEKGYF   79 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~l~p~~~~~~~   79 (320)
                      ..++.+++.+|.++...+++++|+..|+++++.  .++.+++++|.+|.. +    ++++|+..|+++.+  ++++.+++
T Consensus        15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~   89 (212)
T 3rjv_A           15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEI   89 (212)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHH
Confidence            356889999999999999999999999999886  579999999999998 7    99999999999954  67999999


Q ss_pred             HHHHHHHH----ccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----HHHHHHHHHHH
Q 020914           80 RKGCILEA----MEQYDDALSAFQTALQYNP--QSAEVSRKIKRVSQL----AKDKKRAQEVE  132 (320)
Q Consensus        80 ~lg~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~A~~~~  132 (320)
                      ++|.+|..    .+++++|+..|+++++..|  .++.++..+|.++..    .+++++|+..+
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            99999998    8999999999999999988  459999999999987    66788886664

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.53  E-value=3.5e-15  Score=134.16  Aligned_cols=107  Identities=16%  Similarity=0.076  Sum_probs=67.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL---NKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus        11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      ..+|..++..|++++|+..|+++.+.  .++.+++.+|.+|...|++   ++|+..|+++++.   ++.+++.+|.++..
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence            56789999999999999999999876  4678899999999999999   8999999999976   78899999997776


Q ss_pred             cc-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914           88 ME-----QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (320)
Q Consensus        88 ~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  124 (320)
                      .+     ++++|+..|+++++.  +++.++..+|.++...+.
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~  121 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPH  121 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGG
T ss_pred             CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCC
Confidence            65     889999999999984  445588888888776554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.52  E-value=2.9e-14  Score=101.68  Aligned_cols=97  Identities=16%  Similarity=0.211  Sum_probs=93.1

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHH
Q 020914           36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--SAEVSR  113 (320)
Q Consensus        36 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~  113 (320)
                      ++|+++.++..+|.++...|++++|+..|+++++++|++..+++.+|.++..+|++++|+..|+++++++|.  +..++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHH-HHHHHHHHHH
Q 020914          114 KIKRVSQLA-KDKKRAQEVE  132 (320)
Q Consensus       114 ~l~~~~~~~-~~~~~A~~~~  132 (320)
                      .+|.++... |++++|++..
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~  100 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAE  100 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHH
Confidence            999999999 9999997764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.52  E-value=8.7e-14  Score=105.87  Aligned_cols=128  Identities=16%  Similarity=0.212  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---   74 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---   74 (320)
                      +..+..+..+|.++...|++++|+.++++++++.+..      ..++..+|.++..+|++++|+..+++++.+.+..   
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            4567899999999999999999999999999886542      2589999999999999999999999999986543   


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHH
Q 020914           75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        75 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                         ..++..+|.++..+|++++|+..+++++++.+..      ..++..+|.++...|++++|...
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  151 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  151 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence               6789999999999999999999999999874322      45667777777777777777555

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.52  E-value=2.1e-13  Score=116.58  Aligned_cols=122  Identities=6%  Similarity=-0.041  Sum_probs=116.6

Q ss_pred             chHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHhcCCCCHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAG-NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL-V-KLNKALADAETTISLNPQWEKGYF   79 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-~~~~A~~~~~~al~l~p~~~~~~~   79 (320)
                      +|++..+|..+|.++...| .+++++.++.+++..+|++..+|+.++.++..+ + ++++++++++++++++|++..+|.
T Consensus        84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~  163 (349)
T 3q7a_A           84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA  163 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence            6888999999999999999 599999999999999999999999999999998 8 999999999999999999999999


Q ss_pred             HHHHHHHHccCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914           80 RKGCILEAMEQYD--------DALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (320)
Q Consensus        80 ~lg~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  124 (320)
                      .++.++..+|+++        ++++.++++++.+|.+..+|...+.+....+.
T Consensus       164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            9999999999998        99999999999999999999999998876654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.52  E-value=8.6e-14  Score=102.55  Aligned_cols=96  Identities=17%  Similarity=0.215  Sum_probs=92.0

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914           37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (320)
Q Consensus        37 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  116 (320)
                      .|..+.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 020914          117 RVSQLAKDKKRAQEVE  132 (320)
Q Consensus       117 ~~~~~~~~~~~A~~~~  132 (320)
                      .++...|++++|+...
T Consensus        92 ~~~~~~~~~~~A~~~~  107 (133)
T 2lni_A           92 AALEAMKDYTKAMDVY  107 (133)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHH
Confidence            9999999999997764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.51  E-value=4.6e-13  Score=113.26  Aligned_cols=125  Identities=10%  Similarity=0.025  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCCCH--
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTI---SLNPQWE--   75 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~--   75 (320)
                      ...++.+|..+...|++++|+.+|+++++..+..      ..++.++|.+|..+|++++|+.+|++++   +..|++.  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~  194 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence            3456778999999999999999999999876544      5789999999999999999999999999   4566643  


Q ss_pred             --HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHH-HHH
Q 020914           76 --KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ------SAEVSRKIKRVSQLAKDKKRA-QEV  131 (320)
Q Consensus        76 --~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A-~~~  131 (320)
                        .+++++|.+|..+|++++|+.+|++++++.++      ...++..+|.++...|++++| ...
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~  259 (293)
T 2qfc_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA  259 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence              69999999999999999999999999998643      267899999999999999999 554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.51  E-value=1.2e-13  Score=124.04  Aligned_cols=227  Identities=11%  Similarity=0.011  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC------------------------
Q 020914            6 EEMSLKDKGNEFFKAG-----NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK------------------------   56 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------------------   56 (320)
                      ++.+++.+|.++...|     ++++|+..|+++++.++  +.+++++|.+|...+.                        
T Consensus        68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~  145 (452)
T 3e4b_A           68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGL  145 (452)
T ss_dssp             ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHH
Confidence            5667788888776665     78888888888887543  3355555555554433                        


Q ss_pred             ---------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914           57 ---------------LNKALADAETTISLNPQWEKGYFRKGCILEAME---QYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (320)
Q Consensus        57 ---------------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~  118 (320)
                                     .++|...++.+...+|.   +++.+|.+|...|   ++++|+..|+++.+..|.....+..+|.+
T Consensus       146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~  222 (452)
T 3e4b_A          146 AQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARV  222 (452)
T ss_dssp             HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                           22333344444444443   8899999999999   99999999999999999999998999998


Q ss_pred             HHHH----HHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcch-h--hhhhHHHHHHHHHHHHHHhHhhccccChh---
Q 020914          119 SQLA----KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE-E--CWKHVFSFVVETMETAVKSWHETSKVDAK---  188 (320)
Q Consensus       119 ~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---  188 (320)
                      +...    +++++|+..+....         +..+.....+|.+ +  ...++...+...+++|.+.-      ++.   
T Consensus       223 y~~g~~~~~d~~~A~~~~~~aa---------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------~~~A~~  287 (452)
T 3e4b_A          223 LGDATLGTPDEKTAQALLEKIA---------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------QPRAEL  287 (452)
T ss_dssp             HTCGGGSSCCHHHHHHHHHHHG---------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT------CHHHHH
T ss_pred             HhCCCCCCCCHHHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC------CHHHHH
Confidence            8655    57788877653211         1223334444544 2  23455666666666655321      222   


Q ss_pred             ---HHhhhc-----ChhHHHHhhhhhhccccCcCCc-cchhhHHHH----hhHH--HHHHHHHHhchhCCCCCCChhHhh
Q 020914          189 ---VYFLLD-----KEKTDTEKYAPIVNVDKAFESP-HTHGSCFQF----LRQY--ADDSFSSAACLVAPKSIISYPQVW  253 (320)
Q Consensus       189 ---~~~~lg-----~~~~A~~~~~~a~~~~~~~~~~-~~~g~~~~~----~~~~--A~~~~~~al~~~~~~~~~~~~~~~  253 (320)
                         ..+..|     ++++|+.+|+++.   +..... ..+|.+|..    .+.+  |+.+|++|.+.       .++.+.
T Consensus       288 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~~~A~  357 (452)
T 3e4b_A          288 LLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-------GQNSAD  357 (452)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-------TCTTHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-------ChHHHH
Confidence               222356     8999999999998   333223 337777665    2245  99999999853       346778


Q ss_pred             hcccccccc
Q 020914          254 RGQGLRKWR  262 (320)
Q Consensus       254 ~~~~~~~~~  262 (320)
                      +++|.++..
T Consensus       358 ~~Lg~~y~~  366 (452)
T 3e4b_A          358 FAIAQLFSQ  366 (452)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHHh
Confidence            888887764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.50  E-value=1.6e-13  Score=108.91  Aligned_cols=128  Identities=13%  Similarity=0.043  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCC--
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIK------QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---NPQ--   73 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~--   73 (320)
                      ..+..+..+|.++...|++++|+..+++++.      ..|..+.++.++|.++..+|++++|+..+++++.+   .++  
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            5688999999999999999999999999998      44556789999999999999999999999999998   443  


Q ss_pred             --CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           74 --WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--S----AEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        74 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                        ...++..+|.++..+|++++|+..+++++++.+.  +    ..++..+|.++...|++++|....
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  170 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHW  170 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence              3567999999999999999999999999987432  2    234688999999999999997664

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.50  E-value=1.2e-13  Score=103.96  Aligned_cols=73  Identities=23%  Similarity=0.274  Sum_probs=67.9

Q ss_pred             HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914           52 LHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQY----------DDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (320)
Q Consensus        52 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  121 (320)
                      .+.+.+++|+..++++++++|+++.+|+++|.++..++++          ++|+..|++||+++|++..+|+++|.++..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4577899999999999999999999999999999999886          599999999999999999999999999987


Q ss_pred             HHH
Q 020914          122 AKD  124 (320)
Q Consensus       122 ~~~  124 (320)
                      .|.
T Consensus        93 lg~   95 (158)
T 1zu2_A           93 FAF   95 (158)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.48  E-value=3.4e-13  Score=92.56  Aligned_cols=84  Identities=19%  Similarity=0.374  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914           39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (320)
Q Consensus        39 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  118 (320)
                      .++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHH
Q 020914          119 SQLA  122 (320)
Q Consensus       119 ~~~~  122 (320)
                      +...
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.3e-13  Score=98.48  Aligned_cols=89  Identities=15%  Similarity=0.211  Sum_probs=83.2

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHH
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSR  113 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~  113 (320)
                      ++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999      88888


Q ss_pred             HHHHHHHHHHHHHHH
Q 020914          114 KIKRVSQLAKDKKRA  128 (320)
Q Consensus       114 ~l~~~~~~~~~~~~A  128 (320)
                      .+|.++...|+++.|
T Consensus        83 ~~~~~~~~~~~~~~a   97 (111)
T 2l6j_A           83 RLELAQGAVGSVQIP   97 (111)
T ss_dssp             HHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHhHhhh
Confidence            889888888766655

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.48  E-value=2.2e-13  Score=99.76  Aligned_cols=98  Identities=11%  Similarity=0.166  Sum_probs=92.3

Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914           35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (320)
Q Consensus        35 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  114 (320)
                      +.+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 020914          115 IKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       115 l~~~~~~~~~~~~A~~~~  132 (320)
                      +|.++...|++++|+...
T Consensus        86 ~~~~~~~~~~~~~A~~~~  103 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYY  103 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHH
Confidence            999999999999997764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.47  E-value=8.3e-14  Score=97.60  Aligned_cols=92  Identities=17%  Similarity=0.206  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT-LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM   88 (320)
Q Consensus        10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   88 (320)
                      .+.+|..++..|++++|+..|+++++.+|+++. +++.+|.+|..+|++++|+..|+++++++|+++.++..        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            357788888889999999999999888888888 88889999999999999999999999988888887754        


Q ss_pred             cCHHHHHHHHHHHHhhCCCCH
Q 020914           89 EQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        89 ~~~~~A~~~~~~al~~~p~~~  109 (320)
                      +.+.+|+..|++++..+|+++
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHhccCcccc
Confidence            677788888888888777653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.47  E-value=3.1e-13  Score=103.82  Aligned_cols=92  Identities=8%  Similarity=0.013  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISL------------------NPQWEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  102 (320)
                      +..+..+|..++..|+|++|+..|++++.+                  +|.+..+|.++|.+|..+|++++|+.++++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            678999999999999999999999999999                  77778999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914          103 QYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       103 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +++|+++.++..+|.++...|++++|+..+
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~  120 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDL  120 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHH
Confidence            999999999999999999999999997764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.47  E-value=8.2e-13  Score=95.83  Aligned_cols=97  Identities=22%  Similarity=0.335  Sum_probs=89.5

Q ss_pred             cCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914           36 QDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (320)
Q Consensus        36 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  114 (320)
                      .+|.. +.+++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            35655 78999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 020914          115 IKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       115 l~~~~~~~~~~~~A~~~~  132 (320)
                      ++.++...|++++|....
T Consensus        83 la~~~~~~~~~~~A~~~~  100 (125)
T 1na0_A           83 LGNAYYKQGDYDEAIEYY  100 (125)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHH
Confidence            999999999999997764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.47  E-value=3.1e-13  Score=114.26  Aligned_cols=124  Identities=10%  Similarity=0.006  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------CCCCH
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISL-------NPQWE   75 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-------~p~~~   75 (320)
                      .+..+|..+...|++++|+.+|++++.+.+..      ..++.++|.+|..+|++++|+.+|+++++.       .|...
T Consensus       117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (293)
T 3u3w_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence            34458999999999999999999999865443      347999999999999999999999999953       22345


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH-HHHHHHHH
Q 020914           76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKD-KKRAQEVE  132 (320)
Q Consensus        76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~-~~~A~~~~  132 (320)
                      .+++++|.+|..+|++++|+.++++++++.+..      ..++..+|.++...|+ +++|++..
T Consensus       197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~  260 (293)
T 3u3w_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY  260 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            689999999999999999999999999986544      7899999999999994 68997764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.46  E-value=6e-13  Score=93.57  Aligned_cols=72  Identities=22%  Similarity=0.402  Sum_probs=61.9

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914           36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ  107 (320)
Q Consensus        36 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  107 (320)
                      .+|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|++.|++++++.|.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            468888999999999999999999999999999999999999999999999999999999999999888664

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.44  E-value=1e-12  Score=94.32  Aligned_cols=93  Identities=12%  Similarity=0.132  Sum_probs=89.3

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      .+..++.+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++.+|+++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020914          120 QLAKDKKRAQEVE  132 (320)
Q Consensus       120 ~~~~~~~~A~~~~  132 (320)
                      ...|++++|....
T Consensus        83 ~~~~~~~~A~~~~   95 (118)
T 1elw_A           83 EFLNRFEEAKRTY   95 (118)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHHhhHHHHHHHH
Confidence            9999999997764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=2.3e-12  Score=96.71  Aligned_cols=98  Identities=11%  Similarity=0.042  Sum_probs=93.0

Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 020914           35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV  111 (320)
Q Consensus        35 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  111 (320)
                      ..+|..+..++.+|.++...|++++|+..|+++++++|++   ..+++.+|.++..+|++++|+..|+++++++|++..+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            3467789999999999999999999999999999999998   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 020914          112 SRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       112 ~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +..+|.++...|++++|+...
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~  122 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDL  122 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999997764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.43  E-value=2.3e-12  Score=114.64  Aligned_cols=202  Identities=10%  Similarity=-0.015  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----------------TLFSNRAAAFLHLVKLNKALADAETTISL   70 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (320)
                      .+....|..+...|+|++|++.|.++++..|...                 .++.++|.+|...|++++|++.+.+++.+
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~   84 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY   84 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3477889999999999999999999999988742                 46899999999999999999999999998


Q ss_pred             CCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020914           71 NPQWEK------GYFRKGCILEAMEQYDDALSAFQTALQYNP------QSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV  138 (320)
Q Consensus        71 ~p~~~~------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  138 (320)
                      .+....      +...+|.++...|++++|+..+++++...+      ....++..+|.++...|++.+|..........
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            765433      456688888899999999999999998743      23678899999999999999998775321111


Q ss_pred             HHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-----------HHhhhcChhHHHHhhhhhh
Q 020914          139 DMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAPIV  207 (320)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----------~~~~lg~~~~A~~~~~~a~  207 (320)
                      ............++...+.++...|++..|...++++......... .+.           ++...|++.+|...|..++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC-PTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            1111112334566777788888888888888888888776554321 111           5667789999999988887


Q ss_pred             ccc
Q 020914          208 NVD  210 (320)
Q Consensus       208 ~~~  210 (320)
                      +..
T Consensus       244 ~~~  246 (434)
T 4b4t_Q          244 ESY  246 (434)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.42  E-value=1.2e-12  Score=96.05  Aligned_cols=91  Identities=18%  Similarity=0.044  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKI  115 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l  115 (320)
                      .+++.+|.++...|++++|+..|+++++.+|+++   .+++.+|.++..+|++++|+..|+++++.+|++   +.++..+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4578999999999999999999999999999998   899999999999999999999999999999999   8999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 020914          116 KRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       116 ~~~~~~~~~~~~A~~~~  132 (320)
                      |.++...|++++|+...
T Consensus        83 a~~~~~~g~~~~A~~~~   99 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTL   99 (129)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHH
Confidence            99999999999997764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.42  E-value=1.3e-12  Score=94.62  Aligned_cols=82  Identities=21%  Similarity=0.165  Sum_probs=76.3

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..+++++..+|+++.......
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999987764433


Q ss_pred             HH
Q 020914           83 CI   84 (320)
Q Consensus        83 ~~   84 (320)
                      .+
T Consensus       103 ai  104 (117)
T 3k9i_A          103 AI  104 (117)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.41  E-value=6.3e-14  Score=122.69  Aligned_cols=227  Identities=10%  Similarity=-0.044  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      ++..|..+|..+...|++++|++.|.++     .++..+...+.++...|++++|+.+++.+++..|+ +.+...++.+|
T Consensus        31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y  104 (449)
T 1b89_A           31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFAL  104 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHH
Confidence            3468888888888888888888888764     35668888888888888888888888888875443 67777788888


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHH
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF  165 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (320)
                      .++|+++++.+.++.     | +..+|..+|..+...|.+++|...+...              .-+..++.++...|.+
T Consensus       105 ~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~y  164 (449)
T 1b89_A          105 AKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEY  164 (449)
T ss_dssp             ----CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCH
T ss_pred             HHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccH
Confidence            888888887777742     4 3358888888888888888887665321              1222334444444444


Q ss_pred             HHHHHHHHHHHHhHhhccccCh-------hHHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHH
Q 020914          166 SFVVETMETAVKSWHETSKVDA-------KVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSS  236 (320)
Q Consensus       166 ~~a~~~~~~a~~~~~~~~~~~~-------~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~  236 (320)
                      +.       |++.+.++.  ++       .++...|+++.|.......+ +.|+.  ......+|...|++  |+..+++
T Consensus       165 q~-------AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~--l~~lv~~Yek~G~~eEai~lLe~  232 (449)
T 1b89_A          165 QA-------AVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADE--LEELINYYQDRGYFEELITMLEA  232 (449)
T ss_dssp             HH-------HHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHH--HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HH-------HHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhh--HHHHHHHHHHCCCHHHHHHHHHH
Confidence            44       444444443  33       27778889999977776533 45543  12255678888888  9999999


Q ss_pred             HhchhCCCCCCChhHhhhccccccc--ccCcccchhhhccc
Q 020914          237 AACLVAPKSIISYPQVWRGQGLRKW--RHSQQDGFFVQFES  275 (320)
Q Consensus       237 al~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~  275 (320)
                      ++.+     ++....+|..+|..+.  +.++..+.+..|.+
T Consensus       233 aL~l-----e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~  268 (449)
T 1b89_A          233 ALGL-----ERAHMGMFTELAILYSKFKPQKMREHLELFWS  268 (449)
T ss_dssp             HTTS-----TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred             HhCC-----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9988     5666888888887654  44455555555444

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.41  E-value=2.5e-13  Score=122.73  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=98.2

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++.++..+|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..+|
T Consensus        36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  115 (477)
T 1wao_1           36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  115 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH--HHHccCHHHHHHHHH-----------HHHhhCCCCHHH
Q 020914           83 CI--LEAMEQYDDALSAFQ-----------TALQYNPQSAEV  111 (320)
Q Consensus        83 ~~--~~~~~~~~~A~~~~~-----------~al~~~p~~~~~  111 (320)
                      .+  +...|++++|++.++           +++.++|+...+
T Consensus       116 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~  157 (477)
T 1wao_1          116 ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP  157 (477)
T ss_dssp             HHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred             HHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence            99  889999999999999           888888876443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.40  E-value=1.6e-12  Score=95.22  Aligned_cols=94  Identities=11%  Similarity=0.061  Sum_probs=89.1

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHH
Q 020914           39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-------AEV  111 (320)
Q Consensus        39 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~  111 (320)
                      ..+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++.|++       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3468899999999999999999999999999999999999999999999999999999999999999887       899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 020914          112 SRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       112 ~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +..+|.++...|++++|....
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~  102 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFY  102 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHH
Confidence            999999999999999997764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.40  E-value=3.5e-14  Score=124.30  Aligned_cols=228  Identities=10%  Similarity=-0.007  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      .+...+...+..+...|+|++|+.+++.+++..+ ++.+...++.+|.++|++.++.++++.     |+ ..+|..+|..
T Consensus        59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~  131 (449)
T 1b89_A           59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDR  131 (449)
T ss_dssp             ---------------------------------------------------CHHHHTTTTTC-----C------------
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHH
Confidence            3556888899999999999999999999998644 378888999999999999998888742     53 4599999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhH
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV  164 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (320)
                      ++..|+|++|+.+|.++        ..|..++.++..+|++++|.+.......+           ..+...+.+....| 
T Consensus       132 ~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~-----------~~Wk~v~~aCv~~~-  191 (449)
T 1b89_A          132 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANST-----------RTWKEVCFACVDGK-  191 (449)
T ss_dssp             -----CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH-----------HHHHHHHHHHHHTT-
T ss_pred             HHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcCCc-----------hhHHHHHHHHHHcC-
Confidence            99999999999999977        47888999999999999998775432111           11222223333333 


Q ss_pred             HHHHHHHHHHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHH--hhHH--HHH
Q 020914          165 FSFVVETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQF--LRQY--ADD  232 (320)
Q Consensus       165 ~~~a~~~~~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~--~~~~--A~~  232 (320)
                            .++.|..+... +..+|.       .|...|++++|+..+++++.+++.-...++ +|.+|..  .++.  +++
T Consensus       192 ------ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~  264 (449)
T 1b89_A          192 ------EFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE  264 (449)
T ss_dssp             ------CHHHHHHTTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ------cHHHHHHHHHH-HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence                  33444433333 445554       788999999999999999999976555555 6666654  3344  899


Q ss_pred             HHHHHhchhCCCCCC-----ChhHhhhcccccccccCcccchhh
Q 020914          233 SFSSAACLVAPKSII-----SYPQVWRGQGLRKWRHSQQDGFFV  271 (320)
Q Consensus       233 ~~~~al~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~  271 (320)
                      .|...+.+     .+     ..+..|..+...+..-++++.|..
T Consensus       265 ~~~~~ini-----~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          265 LFWSRVNI-----PKVLRAAEQAHLWAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHSTTSCH-----HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhcC-----cHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence            99888876     33     335668888888888888887654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.40  E-value=1.5e-12  Score=104.73  Aligned_cols=125  Identities=13%  Similarity=0.052  Sum_probs=111.9

Q ss_pred             hHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCC--C
Q 020914            4 EAEEMSLKDKGNEFFKAG----NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNP--Q   73 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p--~   73 (320)
                      +.++.+++.+|.++.. +    ++++|+.+|+++++  +.++.+++++|.+|..    .+++++|+..|+++++..|  +
T Consensus        47 ~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  123 (212)
T 3rjv_A           47 QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDA  123 (212)
T ss_dssp             TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHH
T ss_pred             cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcc
Confidence            3467899999999998 7    99999999999975  5689999999999998    8999999999999999998  4


Q ss_pred             CHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-H-----HHHHHHHHH
Q 020914           74 WEKGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA-K-----DKKRAQEVE  132 (320)
Q Consensus        74 ~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~-----~~~~A~~~~  132 (320)
                      ++.+++.+|.+|..    .+++++|+..|+++++. |.++.++..+|.++... |     ++++|+..+
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~  191 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWL  191 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence            69999999999999    89999999999999999 77888999999998754 2     678887664

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.39  E-value=1.6e-12  Score=91.29  Aligned_cols=89  Identities=15%  Similarity=0.151  Sum_probs=75.6

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYF   79 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~   79 (320)
                      .+|.++.+++.+|.+++..|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|+  +.....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            478999999999999999999999999999999999999999999999999999999999999999999774  445555


Q ss_pred             HHHHHHHHccC
Q 020914           80 RKGCILEAMEQ   90 (320)
Q Consensus        80 ~lg~~~~~~~~   90 (320)
                      .+..++...+.
T Consensus        82 ~l~~~l~~~~~   92 (100)
T 3ma5_A           82 ELQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHccc
Confidence            55555544443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.36  E-value=6.7e-12  Score=95.25  Aligned_cols=137  Identities=12%  Similarity=0.099  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------  108 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------  108 (320)
                      +.++..+|.++...|++++|+..+++++++.|..      ..++..+|.++..+|++++|+..|++++++.+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            5789999999999999999999999999986643      2589999999999999999999999999986553      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh--HHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhH
Q 020914          109 AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQH--LDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSW  179 (320)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~  179 (320)
                      ..++..+|.++...|++++|+....  ..+.....  .......+...++.++...|.+..+...++++++..
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~--~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHL--KHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            5678899999999999999987643  22222211  122333444445555555555555555555555443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.36  E-value=6.3e-12  Score=113.20  Aligned_cols=126  Identities=11%  Similarity=0.056  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCC
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQW   74 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~   74 (320)
                      ......+..+..+|+|++|+..|++++++     .|++   ..++.++|.+|..+|+|++|+..++++|.+     .|++
T Consensus       310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H  389 (490)
T 3n71_A          310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN  389 (490)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34556667788999999999999999975     3444   578999999999999999999999999986     3444


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQY-----NPQSA---EVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        75 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                         ...+.++|.+|..+|++++|+..|++|+++     .|+++   .....++.++..++.+++|+.++.
T Consensus       390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~  459 (490)
T 3n71_A          390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYH  459 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               567999999999999999999999999986     56665   456788888889999999987753

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.34  E-value=1.5e-12  Score=112.37  Aligned_cols=103  Identities=12%  Similarity=0.109  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-H
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL-E   86 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~-~   86 (320)
                      .+++++|.++...|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.+. .
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999999999999999999999999999999999999999984 4


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHH
Q 020914           87 AMEQYDDALSAFQTALQYNPQSAE  110 (320)
Q Consensus        87 ~~~~~~~A~~~~~~al~~~p~~~~  110 (320)
                      ..+..+++...|.+++...|+++.
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            567788899999999999998764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.30  E-value=2.3e-11  Score=106.18  Aligned_cols=95  Identities=19%  Similarity=0.185  Sum_probs=90.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|..+..+.++|.+++..|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++
T Consensus       269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~  348 (370)
T 1ihg_A          269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  348 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHH
Q 020914           83 CILEAMEQYDDALSA   97 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~   97 (320)
                      .++..+++++++.+.
T Consensus       349 ~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          349 KVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.30  E-value=3.1e-11  Score=99.99  Aligned_cols=125  Identities=8%  Similarity=0.011  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-C-HHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-W-EKGYFRKGCI   84 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~-~~~~~~lg~~   84 (320)
                      .+.....+..+...|+|++|.+.|..++..+|.+. +.+.+|.++...++|++|+..|+.++...+. . ..+++.+|.+
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            45567778999999999999999999999999888 9999999999999999999999988876422 2 4589999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           85 LEAMEQYDDALSAFQTALQYN--PQ-SAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +..+|++++|+..|++++.-.  |. ..++++.+|.++..+|+.++|...+
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l  231 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL  231 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999998654  65 5679999999999999999998774

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.26  E-value=6.4e-11  Score=82.58  Aligned_cols=71  Identities=18%  Similarity=0.365  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914           44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEK-GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK  114 (320)
Q Consensus        44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  114 (320)
                      .+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++..+|++++|++.|+++++++|++..++..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            367899999999999999999999999999999 99999999999999999999999999999999998843

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.25  E-value=3.3e-11  Score=86.66  Aligned_cols=88  Identities=9%  Similarity=0.025  Sum_probs=77.5

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFR   80 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~   80 (320)
                      .|.++..++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+  +..+...
T Consensus        15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (115)
T 2kat_A           15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE   94 (115)
T ss_dssp             TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999884  4555555


Q ss_pred             HHHHHHHccC
Q 020914           81 KGCILEAMEQ   90 (320)
Q Consensus        81 lg~~~~~~~~   90 (320)
                      +...+..+++
T Consensus        95 l~~~l~~l~~  104 (115)
T 2kat_A           95 LQVFLRRLAR  104 (115)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            5555554443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.20  E-value=2.4e-10  Score=101.59  Aligned_cols=179  Identities=12%  Similarity=0.092  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISLNP------   72 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p------   72 (320)
                      ....++..+|.+|...|++++|++.+.+++...+...      .+...+|.++...|++++|+..+++++...+      
T Consensus        53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  132 (434)
T 4b4t_Q           53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF  132 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence            3456799999999999999999999999998765542      4567789999999999999999999988643      


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-hHH
Q 020914           73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQ-HLD  145 (320)
Q Consensus        73 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~  145 (320)
                      ....++..+|.+|...|+|++|+..+++++..      .|....++..+|.++...|++++|...+.....+.... ...
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  212 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT  212 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence            34678999999999999999999999999886      33346789999999999999999988754322222111 122


Q ss_pred             HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc
Q 020914          146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS  183 (320)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~  183 (320)
                      .....+....|..+...+.+..+...+.++.+.+....
T Consensus       213 ~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~  250 (434)
T 4b4t_Q          213 QTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLT  250 (434)
T ss_dssp             HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence            34456677778888888889999999988888776544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.19  E-value=2.8e-10  Score=78.37  Aligned_cols=73  Identities=15%  Similarity=0.124  Sum_probs=63.5

Q ss_pred             CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914           37 DPSNPTLFSNRAAAFLHLVK---LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        37 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  109 (320)
                      +|+++.++..+|.++...++   .++|...++++++++|+++.+++.+|.+++..|+|++|+..++++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            58888899999998877766   68999999999999999999999999999999999999999999999888843

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.16  E-value=6e-10  Score=82.80  Aligned_cols=98  Identities=13%  Similarity=0.121  Sum_probs=88.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHccCHHHHHH
Q 020914           22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLN-P-QWEKGYFRKGCILEAMEQYDDALS   96 (320)
Q Consensus        22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~-p-~~~~~~~~lg~~~~~~~~~~~A~~   96 (320)
                      ....+.+.|.+.+..+|.+.++.+++|+++.+.+   +.++++..++.+++.+ | +..+++|.+|..++++|+|++|++
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            4567888899999999999999999999999998   6779999999999998 7 678999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHH
Q 020914           97 AFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        97 ~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      +++++|+++|++..+......+.
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHH
Confidence            99999999999999886655443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.13  E-value=2.3e-09  Score=100.22  Aligned_cols=213  Identities=9%  Similarity=-0.018  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914           24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL-ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (320)
Q Consensus        24 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  102 (320)
                      +.....|++++...|.++.+|+..+......|+.++|+ ..|++|+...|.+...|+..+......|+++.|.+.|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             hh-----------CCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhh
Q 020914          103 QY-----------NPQ-----------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC  160 (320)
Q Consensus       103 ~~-----------~p~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (320)
                      ..           .|.           ...+|...+.+....|..+.|..++...  +...   ......++...+....
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A--~~~~---~~~~~~lyi~~A~lE~  480 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC--RRLK---KLVTPDIYLENAYIEY  480 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--HHTG---GGSCTHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhc---CCCChHHHHHHHHHHH
Confidence            85           253           3457888888888888888887765322  1110   0011122222233332


Q ss_pred             hhh-HHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHh-------hHH
Q 020914          161 WKH-VFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFL-------RQY  229 (320)
Q Consensus       161 ~~~-~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~-------~~~  229 (320)
                      ..+ ....|...|+.+++.++....+.-.   .....|+.+.|...|++++...|..   ...+.++...       |..
T Consensus       481 ~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~---~~~~~lw~~~~~fE~~~G~~  557 (679)
T 4e6h_A          481 HISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS---HLLKMIFQKVIFFESKVGSL  557 (679)
T ss_dssp             TTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST---THHHHHHHHHHHHHHHTCCS
T ss_pred             HhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHcCCH
Confidence            222 2567788888888777764433322   4456799999999999999987741   1122222222       222


Q ss_pred             --HHHHHHHHhchhCCC
Q 020914          230 --ADDSFSSAACLVAPK  244 (320)
Q Consensus       230 --A~~~~~~al~~~~~~  244 (320)
                        +...++++.+..|+.
T Consensus       558 ~~~~~v~~R~~~~~P~~  574 (679)
T 4e6h_A          558 NSVRTLEKRFFEKFPEV  574 (679)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence              788889999875544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.13  E-value=1.3e-09  Score=91.40  Aligned_cols=196  Identities=9%  Similarity=-0.016  Sum_probs=109.0

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP--QWEKGYFRKGCILEAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        26 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  103 (320)
                      |+..+++.++..+....++..+|.++...|++++|+..+.+++..+|  ++.+++..++.++..+|+.+.|.+.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            66666666665544555556777777777777777777777766665  6666777777777777777777777777766


Q ss_pred             hCCC----CHHHHHHHH--HHHHHHH--HHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHH
Q 020914          104 YNPQ----SAEVSRKIK--RVSQLAK--DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETA  175 (320)
Q Consensus       104 ~~p~----~~~~~~~l~--~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  175 (320)
                      .+|+    +..+...++  .+....|  ++++|..+++  ...+..+...  ...+...   ++...|.+..|.+.++..
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~--El~~~~p~~~--~~~lLln---~~~~~g~~~eAe~~L~~l  237 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYE--ELSQTFPTWK--TQLGLLN---LHLQQRNIAEAQGIVELL  237 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHH--HHHTTSCSHH--HHHHHHH---HHHHHTCHHHHHHHHHHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHH--HHHHhCCCcc--cHHHHHH---HHHHcCCHHHHHHHHHHH
Confidence            6663    222333333  2244444  5666654432  1111111100  0011111   455566666666666655


Q ss_pred             HHhHhhc------cccChh-------HHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhch
Q 020914          176 VKSWHET------SKVDAK-------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACL  240 (320)
Q Consensus       176 ~~~~~~~------~~~~~~-------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~  240 (320)
                      ...++..      -.-+|.       +...+|+  +|.+.++++.+..|+....          ..+  ....|++++..
T Consensus       238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i----------~d~~~k~~~Fd~~~~k  305 (310)
T 3mv2_B          238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI----------KHHQEIDAKFDELVRK  305 (310)
T ss_dssp             HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH----------HHHHHHHHHHHHHHHT
T ss_pred             HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH----------HHHHHHHHHHHHHHHH
Confidence            5444321      111222       4445576  7888889999988874322          333  55566666644

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.09  E-value=5.9e-10  Score=76.72  Aligned_cols=74  Identities=15%  Similarity=0.130  Sum_probs=68.9

Q ss_pred             cchHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE   75 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   75 (320)
                      +.|+++..+..+|.+++..++   .++|...++++++++|+++.+++.+|..++..|+|++|+..++++++.+|..+
T Consensus         1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            468899999999999987766   79999999999999999999999999999999999999999999999999843

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.08  E-value=7.2e-10  Score=98.27  Aligned_cols=103  Identities=11%  Similarity=0.070  Sum_probs=85.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCC---C
Q 020914           11 KDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQ---W   74 (320)
Q Consensus        11 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~---~   74 (320)
                      ...+......|+|++|+..|++++++     .|++   ..++.++|.+|..+|+|++|+..++++|.+     .|+   -
T Consensus       302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  381 (433)
T 3qww_A          302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV  381 (433)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred             HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            33444445678999999999999975     4555   577999999999999999999999999986     344   4


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCHHHHH
Q 020914           75 EKGYFRKGCILEAMEQYDDALSAFQTALQY-----NPQSAEVSR  113 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~  113 (320)
                      ...+.++|.+|..+|++++|+..|++|+++     .|+++.+..
T Consensus       382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          382 ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            567999999999999999999999999997     677776543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.07  E-value=7.8e-10  Score=98.16  Aligned_cols=107  Identities=13%  Similarity=0.089  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCC
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQ   73 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~   73 (320)
                      +..+......+..+|+|++|+..+++++++     .|++   ..++.++|.+|..+|+|++|+..++++|.+     .|+
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            344555566778899999999999999975     3444   578999999999999999999999999986     344


Q ss_pred             C---HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCHHHHH
Q 020914           74 W---EKGYFRKGCILEAMEQYDDALSAFQTALQY-----NPQSAEVSR  113 (320)
Q Consensus        74 ~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~  113 (320)
                      +   ...++++|.+|..+|++++|+..|++|+++     .|+++.+..
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            4   567999999999999999999999999987     677766543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.06  E-value=3.6e-09  Score=88.80  Aligned_cols=148  Identities=7%  Similarity=-0.036  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020914           60 ALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP--QSAEVSRKIKRVSQLAKDKKRAQEVENIRSN  137 (320)
Q Consensus        60 A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  137 (320)
                      |+..+++.+...+....+++.+|.++...|++++|++.+.+++..+|  ++.+++..++.++...|+.+.|.+.......
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            66666666665544555556666666666666666666666666665  5666666666666666666666655322111


Q ss_pred             hHHH--HhHHHHHHHHhhhhcchhhhhh--HHHHHHHHHHHHHHhHhh--ccccChhHHhhhcChhHHHHhhhhhhcc
Q 020914          138 VDMV--QHLDEFKSEMSEKYGAEECWKH--VFSFVVETMETAVKSWHE--TSKVDAKVYFLLDKEKTDTEKYAPIVNV  209 (320)
Q Consensus       138 ~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~a~~~~~~--~~~~~~~~~~~lg~~~~A~~~~~~a~~~  209 (320)
                      ....  ..-+....  ...-+.+....|  .+..+...|++....++.  ...+.-+++..+|++++|...++.+++.
T Consensus       165 ~~~d~~~~~d~~l~--~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          165 AIEDTVSGDNEMIL--NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HSCHHHHHHHHHHH--HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred             cCccccccchHHHH--HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            1110  00001111  111111111111  344455555555555543  1111111666666666666666655555

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.06  E-value=2.4e-09  Score=79.71  Aligned_cols=105  Identities=13%  Similarity=0.042  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHH
Q 020914           21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA----MEQYDDALS   96 (320)
Q Consensus        21 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~~~~~~A~~   96 (320)
                      +++++|+..|+++.+..+..  +.  +|.+|...+..++|+..|+++.+.  +++.+++++|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            46778888888888776433  33  888888878888888888888776  677888888888887    778888888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 020914           97 AFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVEN  133 (320)
Q Consensus        97 ~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~  133 (320)
                      .|+++.+.  .++.+...+|.++..    .+++++|...+.
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~  121 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFE  121 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence            88888775  677888888888877    677777766643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.02  E-value=3.2e-09  Score=78.96  Aligned_cols=98  Identities=14%  Similarity=0.031  Sum_probs=88.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 020914           13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGYFRKGCILEA-   87 (320)
Q Consensus        13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-   87 (320)
                      +|.++...+.+++|+..|+++.+.  .++.+++++|.+|..    .+++++|+..|+++.+.  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            889999999999999999999987  579999999999999    89999999999999987  789999999999999 


Q ss_pred             ---ccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914           88 ---MEQYDDALSAFQTALQYNPQSAEVSRKIK  116 (320)
Q Consensus        88 ---~~~~~~A~~~~~~al~~~p~~~~~~~~l~  116 (320)
                         .+++++|+..|+++.+.  .++.+...++
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence               99999999999999987  4556655554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.01  E-value=3.4e-09  Score=74.67  Aligned_cols=76  Identities=16%  Similarity=0.191  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQD-------PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   79 (320)
                      +...+.+|..++..|+|..|+..|++|++..       +..+.++..+|.++.++|++++|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4555666666666666666666666666542       123444555555555555555555555555555555555444


Q ss_pred             HHH
Q 020914           80 RKG   82 (320)
Q Consensus        80 ~lg   82 (320)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.99  E-value=9.8e-09  Score=87.72  Aligned_cols=126  Identities=12%  Similarity=0.102  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-------HHH-HHHH--HHHhcCC
Q 020914            6 EEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLN-------KAL-ADAE--TTISLNP   72 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-------~A~-~~~~--~al~l~p   72 (320)
                      .+..++.+|..++..++   +.+|+.+|++|++++|+++.++..++.+|.....+.       .++ ..++  .++..+|
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            46677888888887654   589999999999999999999999999997432211       111 1222  2346789


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        73 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      .++.++..+|.++...|++++|+..+++|+.++|+ ..++..+|.++...|++++|++.+
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~  333 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAY  333 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999975 778899999999999999998775

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.98  E-value=3.9e-09  Score=98.71  Aligned_cols=205  Identities=9%  Similarity=-0.030  Sum_probs=150.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----------
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAA-ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-----------   70 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----------   70 (320)
                      .|..+..|+..+......|+.++|+ ..|++|+...|.+..+|...+......|++++|...|++++..           
T Consensus       339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~  418 (679)
T 4e6h_A          339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED  418 (679)
T ss_dssp             TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            3567788999999999999999997 9999999999999999999999999999999999999999975           


Q ss_pred             CCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Q 020914           71 NPQ-----------WEKGYFRKGCILEAMEQYDDALSAFQTALQY-NPQSAEVSRKIKRVSQLAKD-KKRAQEVENIRSN  137 (320)
Q Consensus        71 ~p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~  137 (320)
                      .|.           ...+|...+....+.|..+.|...|.+|++. .+....+|...+.+....+. .+.|..+++  ..
T Consensus       419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife--~~  496 (679)
T 4e6h_A          419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLE--LG  496 (679)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHH--HH
T ss_pred             cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHH--HH
Confidence            253           4568999999999999999999999999998 55556777777766655543 677766542  22


Q ss_pred             hHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhh---ccccChh---HHhhhcChhHHHHhhhhhhcccc
Q 020914          138 VDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE---TSKVDAK---VYFLLDKEKTDTEKYAPIVNVDK  211 (320)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~  211 (320)
                      +...    +....+...+.+.....|....+...|+.|+...+.   ...+...   .-...|+.+.+...++++.+..|
T Consensus       497 Lk~~----p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P  572 (679)
T 4e6h_A          497 LKYF----ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP  572 (679)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred             HHHC----CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            2222    222333344455555555666666666666544331   1111111   33355999999999999999988


Q ss_pred             Cc
Q 020914          212 AF  213 (320)
Q Consensus       212 ~~  213 (320)
                      ..
T Consensus       573 ~~  574 (679)
T 4e6h_A          573 EV  574 (679)
T ss_dssp             TC
T ss_pred             CC
Confidence            74

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.98  E-value=1.1e-08  Score=72.12  Aligned_cols=79  Identities=9%  Similarity=-0.054  Sum_probs=71.4

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLN-------PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  112 (320)
                      ++.-++.+|..++..|+|..|+..|++|++..       +..+.++..+|.++.++|++++|+..++++++++|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            46678999999999999999999999999863       34578999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 020914          113 RKIKRV  118 (320)
Q Consensus       113 ~~l~~~  118 (320)
                      .+++.+
T Consensus        84 ~n~~~~   89 (104)
T 2v5f_A           84 GNLKYF   89 (104)
T ss_dssp             HHHHHH
T ss_pred             hhHHHH
Confidence            887743

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.94  E-value=2.2e-09  Score=96.70  Aligned_cols=103  Identities=6%  Similarity=-0.066  Sum_probs=90.5

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc----
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL----   70 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   70 (320)
                      .|.-+..+.++|.+|..+|+|++|+.++++++++     .|++   +..+.++|.+|..+|++++|+..|++|+.+    
T Consensus       347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~  426 (490)
T 3n71_A          347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT  426 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            4778899999999999999999999999999965     4444   578999999999999999999999999986    


Q ss_pred             -CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 020914           71 -NPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYN  105 (320)
Q Consensus        71 -~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  105 (320)
                       -|++   .....+++.++..++++++|...|+++.+..
T Consensus       427 lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          427 HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4555   4567889999999999999999999986644

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.88  E-value=9.3e-09  Score=84.43  Aligned_cols=107  Identities=14%  Similarity=0.077  Sum_probs=94.0

Q ss_pred             cchHHHHHHHHHHHHHHH-----cCC------HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----cCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFK-----AGN------YLKAAALYTQAIKQDPS--NPTLFSNRAAAFLHL-----VKLNKALAD   63 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~-----~g~------~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~~A~~~   63 (320)
                      ..|++++.++-.|.+...     .|.      ...|...+++|++++|+  +..+|..+|..|...     |+.++|..+
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            357788888888777743     233      57899999999999999  677999999999996     999999999


Q ss_pred             HHHHHhcCCCC-HHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCC
Q 020914           64 AETTISLNPQW-EKGYFRKGCILEA-MEQYDDALSAFQTALQYNPQS  108 (320)
Q Consensus        64 ~~~al~l~p~~-~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~  108 (320)
                      |++||+++|+. ..+++..|..+.. .|++++|.+.+++++..+|..
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999975 9999999999988 599999999999999998874

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.74  E-value=2.8e-08  Score=73.80  Aligned_cols=82  Identities=12%  Similarity=0.051  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAG---NYLKAAALYTQAIKQD-P-SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY   78 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   78 (320)
                      |.+.++.++.|.++...+   +.++++..++..++.+ | ...++++++|..+.++|+|++|+.+++++|+++|++.++.
T Consensus        29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~  108 (152)
T 1pc2_A           29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  108 (152)
T ss_dssp             CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            456889999999999988   7779999999999998 7 5689999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 020914           79 FRKGCIL   85 (320)
Q Consensus        79 ~~lg~~~   85 (320)
                      ..+-.+-
T Consensus       109 ~Lk~~ie  115 (152)
T 1pc2_A          109 ELERLID  115 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.68  E-value=5.1e-07  Score=64.60  Aligned_cols=101  Identities=12%  Similarity=0.087  Sum_probs=87.8

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHccCHHH
Q 020914           19 KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNK---ALADAETTISLN-P-QWEKGYFRKGCILEAMEQYDD   93 (320)
Q Consensus        19 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~l~-p-~~~~~~~~lg~~~~~~~~~~~   93 (320)
                      .......+...|.+.+..++....+-+++|+++.+..+...   +|..++..+..+ | ..-+++|.+|..++++|+|++
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence            34456678888888888888899999999999999988776   999999999887 5 567899999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           94 ALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        94 A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      |+.+++..|++.|++.++......+.
T Consensus        93 A~~~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999999876554443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.62  E-value=2.2e-07  Score=79.46  Aligned_cols=106  Identities=16%  Similarity=0.108  Sum_probs=84.6

Q ss_pred             chHHHHHHHHHHHHHHHcCC-------HHHHHH-HHH--HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 020914            3 AEAEEMSLKDKGNEFFKAGN-------YLKAAA-LYT--QAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP   72 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~-------~~~A~~-~~~--~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   72 (320)
                      .|+.+.++-.++.++.....       ..+++. .+.  .++..+|.++.++..+|.++...|++++|+..+++|+.++|
T Consensus       229 DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~  308 (372)
T 3ly7_A          229 SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM  308 (372)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            47777777777777752211       111111 122  22356799999999999999999999999999999999997


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914           73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        73 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  109 (320)
                      + ..+|..+|.++...|++++|++.|++|+.++|...
T Consensus       309 s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          309 S-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            4 78899999999999999999999999999999875

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.60  E-value=1.1e-06  Score=72.33  Aligned_cols=129  Identities=10%  Similarity=0.089  Sum_probs=98.3

Q ss_pred             hHHHHHHHHHHHHHHHc------CCHHHHHHH-----HHHHH-hcCCCCHHHHHHHHHHHHH---c--c------CHHHH
Q 020914            4 EAEEMSLKDKGNEFFKA------GNYLKAAAL-----YTQAI-KQDPSNPTLFSNRAAAFLH---L--V------KLNKA   60 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~------g~~~~A~~~-----~~~al-~~~p~~~~~~~~lg~~~~~---~--g------~~~~A   60 (320)
                      |..+..++.+|.-|...      ..+.+++..     +.+++ +.+|+++++++..|.+...   .  |      ...+|
T Consensus       103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A  182 (301)
T 3u64_A          103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAA  182 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHH
Confidence            34556666666655322      344444432     34444 5578888888888877754   2  2      35799


Q ss_pred             HHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-HHHHHHHHHH
Q 020914           61 LADAETTISLNPQ--WEKGYFRKGCILEAM-----EQYDDALSAFQTALQYNPQS-AEVSRKIKRVSQL-AKDKKRAQEV  131 (320)
Q Consensus        61 ~~~~~~al~l~p~--~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~~~~~~A~~~  131 (320)
                      ...+++|++++|+  +..+|..+|.+|...     |+.++|.++|++||+++|+. ..++..+|..+.. .++.+.+...
T Consensus       183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~  262 (301)
T 3u64_A          183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEA  262 (301)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Confidence            9999999999999  677999999999996     99999999999999999975 9999999998877 4888888666


Q ss_pred             H
Q 020914          132 E  132 (320)
Q Consensus       132 ~  132 (320)
                      .
T Consensus       263 L  263 (301)
T 3u64_A          263 L  263 (301)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.35  E-value=3.3e-05  Score=69.77  Aligned_cols=120  Identities=6%  Similarity=-0.077  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhc
Q 020914           78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK-DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYG  156 (320)
Q Consensus        78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (320)
                      |...+....+.+..+.|...|++| ...+....+|...+.+....+ +.+.|..+.+.  .+...+.    .+.+...+.
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~--al~~~~~----~~~~~~~yi  361 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS--GLLKHPD----STLLKEEFF  361 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH--HHHHCTT----CHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH--HHHHCCC----CHHHHHHHH
Confidence            444444444567788888888888 433335566666666665555 36666655431  1111111    111222233


Q ss_pred             chhhhhhHHHHHHHHHHHH---HHhHhhccccChhHHhhhcChhHHHHhhhhhhc
Q 020914          157 AEECWKHVFSFVVETMETA---VKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVN  208 (320)
Q Consensus       157 ~~~~~~~~~~~a~~~~~~a---~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~  208 (320)
                      +.....|....+...++.+   ...|.....    .-...|+.+.+...+++++.
T Consensus       362 d~e~~~~~~~~aR~l~er~~k~~~lw~~~~~----fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          362 LFLLRIGDEENARALFKRLEKTSRMWDSMIE----YEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHTCHHHHHHHHHHSCCBHHHHHHHHH----HHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCCHHHHHHHHHHHHH
Confidence            3334445555555555554   222222221    11244777766666666663

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.35  E-value=9.1e-07  Score=78.45  Aligned_cols=86  Identities=9%  Similarity=-0.034  Sum_probs=71.5

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc----
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL----   70 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   70 (320)
                      .|.-+..+.++|.+|..+|+|++|+.++++++.+     .|++   +..++++|.+|..+|++++|+..|++|+++    
T Consensus       325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~  404 (429)
T 3qwp_A          325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT  404 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            4677889999999999999999999999999965     3444   577999999999999999999999999986    


Q ss_pred             -CCCCH---HHHHHHHHHHHHc
Q 020914           71 -NPQWE---KGYFRKGCILEAM   88 (320)
Q Consensus        71 -~p~~~---~~~~~lg~~~~~~   88 (320)
                       -|+++   .++.+++.+...+
T Consensus       405 lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          405 HGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             TCTTSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHH
Confidence             46665   4556666666544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.31  E-value=2.6e-06  Score=75.46  Aligned_cols=76  Identities=7%  Similarity=-0.048  Sum_probs=66.1

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPS---NPTLFSNRAAAFLHLVKLNKALADAETTISL----   70 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   70 (320)
                      .|.-+..+.++|.+|..+|+|++|+.++++++++     .|+   .+..+.++|.+|..+|++++|+..|++|+++    
T Consensus       336 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~  415 (433)
T 3qww_A          336 NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA  415 (433)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999999999965     344   4577999999999999999999999999986    


Q ss_pred             -CCCCHHHH
Q 020914           71 -NPQWEKGY   78 (320)
Q Consensus        71 -~p~~~~~~   78 (320)
                       -|+++..-
T Consensus       416 lG~~Hp~~~  424 (433)
T 3qww_A          416 HGKDHPYIS  424 (433)
T ss_dssp             TCTTCHHHH
T ss_pred             cCCCChHHH
Confidence             57776543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.13  E-value=7.4e-05  Score=67.52  Aligned_cols=202  Identities=4%  Similarity=-0.051  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914           23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (320)
Q Consensus        23 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  102 (320)
                      .+.....|++++...|..+.+|...+..+...|+.++|...|++|+.. |.+...|...+... ..+   +..+.+..+.
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~  269 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKY  269 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHH
Confidence            345678999999999999999999999999999999999999999999 99988877655542 111   1111111111


Q ss_pred             h----------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh-HHHHHHHH
Q 020914          103 Q----------YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH-VFSFVVET  171 (320)
Q Consensus       103 ~----------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~  171 (320)
                      .          ..+....+|...+......+..+.|..++.....    +.   ....++...+......+ ....+...
T Consensus       270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~----~~---~~~~v~i~~A~lE~~~~~d~~~ar~i  342 (493)
T 2uy1_A          270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGN----EG---VGPHVFIYCAFIEYYATGSRATPYNI  342 (493)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT----SC---CCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhC----CC---CChHHHHHHHHHHHHHCCChHHHHHH
Confidence            1          0111246788888888788888888777543311    10   01123333333333334 47778888


Q ss_pred             HHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhch
Q 020914          172 METAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACL  240 (320)
Q Consensus       172 ~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~  240 (320)
                      ++.++..+++...+.-.   .....|+.+.|...|+++..    ....|. ...+-...|..  +.+.+++++..
T Consensus       343 fe~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~  413 (493)
T 2uy1_A          343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK----TSRMWDSMIEYEFMVGSMELFRELVDQKMDA  413 (493)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            99888877653322111   34567888999999998843    222232 22222333444  55567777753

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.11  E-value=3.8e-05  Score=56.16  Aligned_cols=109  Identities=11%  Similarity=-0.033  Sum_probs=85.3

Q ss_pred             chHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNY------LKAAALYTQAIKQDPSN--------PTLFSNRAAAFLHLVKLNKALADAETTI   68 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al   68 (320)
                      +|.+.+.|..-....-..|+.      ++-++.|++|+..-|..        ...|...|.. ...++.++|.+.|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            567788888888888777888      78888888888766542        4566667754 56688888888888888


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914           69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (320)
Q Consensus        69 ~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  112 (320)
                      ++....+.+|...|.--.+.|+...|.+.+.+|+.+.|...+..
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            88777888888888888888888888888888888888776654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.09  E-value=2.8e-05  Score=58.10  Aligned_cols=91  Identities=13%  Similarity=0.150  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCC--
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQD---PSN------PTLFSNRAAAFLHLVKLNKALADAETTISLN---PQW--   74 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~--   74 (320)
                      +++.....++..|.|+.|+-....++.+.   |+-      ..++..+|.+++..++|..|...|++||+..   |..  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            56778889999999999999999877653   331      3588999999999999999999999997752   111  


Q ss_pred             --------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 020914           75 --------------------EKGYFRKGCILEAMEQYDDALSAFQ   99 (320)
Q Consensus        75 --------------------~~~~~~lg~~~~~~~~~~~A~~~~~   99 (320)
                                          .+..+.++.||..++++++|+..++
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le  146 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD  146 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence                                1455666666666666666666554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.08  E-value=1.3e-05  Score=57.34  Aligned_cols=82  Identities=11%  Similarity=0.014  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLK---AAALYTQAIKQD-P-SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY   78 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   78 (320)
                      +.+.++.++.|.++....+...   +|..++..+..+ | ..-+.++.+|..++++|+|++|..+++.+|+..|++.++.
T Consensus        32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            3457888999999999887766   999999998877 5 4568999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 020914           79 FRKGCIL   85 (320)
Q Consensus        79 ~~lg~~~   85 (320)
                      -....+-
T Consensus       112 ~Lk~~i~  118 (126)
T 1nzn_A          112 ELERLID  118 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.99  E-value=0.00042  Score=50.31  Aligned_cols=81  Identities=9%  Similarity=-0.036  Sum_probs=70.9

Q ss_pred             CCCHHHHHHHHHHHHHccCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914           38 PSNPTLFSNRAAAFLHLVKL---NKALADAETTISLNPQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (320)
Q Consensus        38 p~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  113 (320)
                      +..+.+.+++|+++.+..+.   .+++..++..+...|. .-+.+|.+|..+.++|+|++|..+.+..|++.|++.++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45789999999999999865   4799999999998884 5789999999999999999999999999999999998875


Q ss_pred             HHHHH
Q 020914          114 KIKRV  118 (320)
Q Consensus       114 ~l~~~  118 (320)
                      ....+
T Consensus       116 Lk~~I  120 (144)
T 1y8m_A          116 LKSMV  120 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.98  E-value=0.00016  Score=51.86  Aligned_cols=80  Identities=9%  Similarity=-0.041  Sum_probs=70.3

Q ss_pred             CHHHHHHHHHHHHHccCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           40 NPTLFSNRAAAFLHLVKL---NKALADAETTISLNPQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      .+.+-+++|+++.+..+.   .++|..++..++.+|. .-+.++.+|..+.++|+|++|..+.+.+|++.|++..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            679999999999998765   4799999999998884 578999999999999999999999999999999999987655


Q ss_pred             HHHH
Q 020914          116 KRVS  119 (320)
Q Consensus       116 ~~~~  119 (320)
                      ..+.
T Consensus       119 ~~Ie  122 (134)
T 3o48_A          119 SMVE  122 (134)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.79  E-value=0.00026  Score=50.74  Aligned_cols=80  Identities=11%  Similarity=-0.044  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      ++++.++.|.++....+   ..++|..++..+..+|. .-+.++.+|..+.++|+|++|..+.+.+|+..|+|.++.-..
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            45788888999988765   45799999999998884 478999999999999999999999999999999999887666


Q ss_pred             HHHH
Q 020914           82 GCIL   85 (320)
Q Consensus        82 g~~~   85 (320)
                      ..+-
T Consensus       119 ~~Ie  122 (134)
T 3o48_A          119 SMVE  122 (134)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.70  E-value=0.0052  Score=45.84  Aligned_cols=102  Identities=11%  Similarity=0.032  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--c--------------
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS--L--------------   70 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l--------------   70 (320)
                      .+--..++..++-.|+|..|+-.+.     .-+.+.+.+.-+.||..+.+|.+|+.+++..+.  .              
T Consensus        33 ~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff  107 (242)
T 3kae_A           33 PEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF  107 (242)
T ss_dssp             -CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred             hHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence            3445667889999999999988764     234588888999999999999999999999993  2              


Q ss_pred             -CCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914           71 -NPQWEK-GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR  113 (320)
Q Consensus        71 -~p~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  113 (320)
                       +|.+.+ .+..+|.++..+|+-+||+.+|.......|-.+.+-.
T Consensus       108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn  152 (242)
T 3kae_A          108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN  152 (242)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence             244444 4667899999999999999999999999987666543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.70  E-value=0.00052  Score=49.82  Aligned_cols=81  Identities=12%  Similarity=-0.027  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNY---LKAAALYTQAIKQDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR   80 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   80 (320)
                      ...++.++.++++....+.   .+++..++..+..+|. .-+.++.+|..+.++|+|++|..+.+.+|+..|+|.++.-.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            3567888999999988754   5799999999998885 46899999999999999999999999999999999988766


Q ss_pred             HHHHH
Q 020914           81 KGCIL   85 (320)
Q Consensus        81 lg~~~   85 (320)
                      ...+-
T Consensus       117 k~~Ie  121 (144)
T 1y8m_A          117 KSMVE  121 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.68  E-value=0.0004  Score=50.85  Aligned_cols=97  Identities=18%  Similarity=0.118  Sum_probs=82.0

Q ss_pred             hcCCCCHHHHHHHHHHHHHccCH------HHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914           35 KQDPSNPTLFSNRAAAFLHLVKL------NKALADAETTISLNPQ--------WEKGYFRKGCILEAMEQYDDALSAFQT  100 (320)
Q Consensus        35 ~~~p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~l~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~  100 (320)
                      -+.|++++.|..........|+.      ++-++.|++|+..-|-        +...|...|.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            46899999999999999989999      8999999999987653        34567777754 677999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914          101 ALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus       101 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      +++++...+.+|...++...+.|+...|..+.
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkIL  117 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLL  117 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            99998889999999999999999999997664

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.58  E-value=0.0004  Score=51.92  Aligned_cols=92  Identities=15%  Similarity=0.091  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC------C
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQW---------EKGYFRKGCILEAMEQYDDALSAFQTALQYN------P  106 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p  106 (320)
                      .+++.-...+...|.|+.|+-....++.+..++         ..++..+|++++..++|..|...|++||+..      |
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            456666777888999999999999887764332         3478999999999999999999999998751      1


Q ss_pred             C-------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914          107 Q-------------------SAEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus       107 ~-------------------~~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                      .                   +.++.+.++.|+..++++++|+...+
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le  146 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD  146 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence            1                   12688999999999999999987743

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.34  E-value=0.011  Score=53.36  Aligned_cols=159  Identities=14%  Similarity=0.032  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHhcCC-CCHHH
Q 020914           10 LKDKGNEFFKAGNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLV---------KLNKALADAETTISLNP-QWEKG   77 (320)
Q Consensus        10 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~l~p-~~~~~   77 (320)
                      +...-+.+.+.|+.++|++.|+++.+.  .| +...|..+-.++...+         ..++|.+.|++.....- -+..+
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            344446677899999999999998865  34 5666766666665443         37889999988876532 26778


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhc
Q 020914           78 YFRKGCILEAMEQYDDALSAFQTALQYN-PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYG  156 (320)
Q Consensus        78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (320)
                      |..+-..|.+.|++++|.+.|++..+.. +-+..+|..+-..+...|+.++|.++..........+.     ...+..+-
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-----~~ty~~Li  182 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-----EPELAALL  182 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-----HHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHH
Confidence            8889999999999999999999988752 33677888888888889999999887543221111111     11233334


Q ss_pred             chhhhhhHHHHHHHHHHH
Q 020914          157 AEECWKHVFSFVVETMET  174 (320)
Q Consensus       157 ~~~~~~~~~~~a~~~~~~  174 (320)
                      ..+...|..+.|...+++
T Consensus       183 ~~~~~~g~~d~A~~ll~~  200 (501)
T 4g26_A          183 KVSMDTKNADKVYKTLQR  200 (501)
T ss_dssp             HHHHHTTCHHHHHHHHHH
T ss_pred             HHHhhCCCHHHHHHHHHH
Confidence            444555556666665554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.15  E-value=0.013  Score=51.04  Aligned_cols=96  Identities=17%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------C--------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS--------N--------------PTLFSNRAAAFLHLVKLNKALADAE   65 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~--------------~~~~~~lg~~~~~~g~~~~A~~~~~   65 (320)
                      +.+...|......|+.+.|...+.+|+.+-..        .              ..+...++..+...|++.+|+..+.
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34555666667789999999999999987321        1              1344556777778888888888888


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           66 TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        66 ~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  103 (320)
                      +++..+|-+..+|..+-.++...|+..+|++.|+++-+
T Consensus       196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888877644

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.07  E-value=0.0042  Score=55.66  Aligned_cols=79  Identities=6%  Similarity=-0.027  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914           43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (320)
Q Consensus        43 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  121 (320)
                      .+..+|...+....+..|..+|.+|+.+.|++...|+++|.+....|+.-+|+-+|.+++......+.+..++..+...
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            5677899999999999999999999999999999999999999999999999999999999988899999999887654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.00  E-value=0.018  Score=51.92  Aligned_cols=112  Identities=12%  Similarity=0.040  Sum_probs=92.6

Q ss_pred             CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 020914           22 NYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQWEKGYFRKGCILEAMEQYDDALSAFQ   99 (320)
Q Consensus        22 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~   99 (320)
                      ..++|.+.|++..... +.+...|..+-..|.+.|+.++|+..|++..+.. +-+...|..+-..|.+.|+.++|.+.|+
T Consensus        85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence            4788999999887653 2267889999999999999999999999987753 2267788888899999999999999999


Q ss_pred             HHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914          100 TALQYN-PQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus       100 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                      ...+.. .-+..++..+-..+...|+.++|.++..
T Consensus       165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~  199 (501)
T 4g26_A          165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQ  199 (501)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            998763 2366788888888999999999988755

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.69  E-value=0.028  Score=45.59  Aligned_cols=63  Identities=22%  Similarity=0.275  Sum_probs=58.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q 020914           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG   77 (320)
Q Consensus        15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   77 (320)
                      ..+++.|+.++|++.....++.+|.++.....+-..+.-.|+|+.|..-++.+.+++|+....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            356788999999999999999999999999999999999999999999999999999987543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.0066  Score=57.09  Aligned_cols=62  Identities=16%  Similarity=0.111  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT   67 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   67 (320)
                      ...-+...+..+...|+|+-|+.+.++|+...|.....|+.|+.||..+|+|+.|+-.++.+
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34567777888888999999999999999999999999999999999999999999887766

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.60  E-value=0.018  Score=51.66  Aligned_cols=80  Identities=14%  Similarity=0.010  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      ..+..+|+.....+.+..|..+|.+|+.+.|++...++.+|.+....|+.-+|+-+|-+++....-.+.+.-++..++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999998877799999999888765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.014  Score=55.01  Aligned_cols=111  Identities=16%  Similarity=0.102  Sum_probs=81.8

Q ss_pred             cCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--Hc-cCHHHHHHHHHHHHh--------cCCCCH----------HH
Q 020914           20 AGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFL--HL-VKLNKALADAETTIS--------LNPQWE----------KG   77 (320)
Q Consensus        20 ~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~-g~~~~A~~~~~~al~--------l~p~~~----------~~   77 (320)
                      .|+ ++.|+..+++....+|.... ++..+.+..  .. .+--+|+....++++        +.+.+.          ..
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            445 68899999999998886543 333333222  22 344577777777764        233332          24


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      +...+.-+...|+|+-|+++-++|+...|....+|..|+.+|..+|+++.|+-.
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLt  393 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFA  393 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHH
Confidence            455567677889999999999999999999999999999999999999999644

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.50  E-value=0.11  Score=45.03  Aligned_cols=176  Identities=13%  Similarity=0.048  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHH---
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----TLFSNRAAAFLH-LVKLNKALADAETTISLNPQWEK---   76 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~---   76 (320)
                      ...+.+.+|..|...|++++-.+++......-+..+     .....+-..+.. -+..+.-++.+..+++...+.-.   
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl   97 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346889999999999999999888877654433322     222222222222 13334444555555543222211   


Q ss_pred             ---HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-hHHH
Q 020914           77 ---GYFRKGCILEAMEQYDDALSAFQTALQYNPQ--S----AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQ-HLDE  146 (320)
Q Consensus        77 ---~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~  146 (320)
                         .-..+|..|+..|+|.+|.+.+.+.++--..  +    .+++..-.+++...+++.++...+........+. ....
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~  177 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK  177 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence               1225677777777777777777666653211  1    2334444455556666666655543222222111 1122


Q ss_pred             HHHHHhhhhcchhh-hhhHHHHHHHHHHHHHHhHhh
Q 020914          147 FKSEMSEKYGAEEC-WKHVFSFVVETMETAVKSWHE  181 (320)
Q Consensus       147 ~~~~~~~~~~~~~~-~~~~~~~a~~~~~~a~~~~~~  181 (320)
                      ....+...-|..+. ..+++..|-..|=++...|..
T Consensus       178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~  213 (394)
T 3txn_A          178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS  213 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence            33444444455555 566666666666555555543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.68  E-value=0.12  Score=44.84  Aligned_cols=94  Identities=18%  Similarity=0.122  Sum_probs=75.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCC----HHHH
Q 020914           12 DKGNEFFKAGNYLKAAALYTQAIKQ----DPS--NPTLFSNRAAAFLHLVKLNKALADAETTISLN---PQW----EKGY   78 (320)
Q Consensus        12 ~~g~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~----~~~~   78 (320)
                      .+|..|+..|+|.+|.+.+.+.++.    +..  -.+++..-..+|..++++.++...+.+|....   +.+    +...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            7899999999999999999988853    211  14778888999999999999999999987653   122    3445


Q ss_pred             HHHHHHHH-HccCHHHHHHHHHHHHhhC
Q 020914           79 FRKGCILE-AMEQYDDALSAFQTALQYN  105 (320)
Q Consensus        79 ~~lg~~~~-~~~~~~~A~~~~~~al~~~  105 (320)
                      ..-|.++. ..++|..|...|-.+++-.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            66688999 8999999999999987543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.35  Score=36.64  Aligned_cols=50  Identities=14%  Similarity=-0.035  Sum_probs=42.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS   69 (320)
Q Consensus        15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   69 (320)
                      ......|+++.|.+..+..     ++...|..+|......|+++-|..+|.++-.
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            4567889999999987754     5688999999999999999999999988743

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.31  E-value=0.16  Score=44.76  Aligned_cols=99  Identities=10%  Similarity=-0.014  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCH----HHHH
Q 020914            9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDP---SNPTLFSNRAAAFLHLVKLNKALADAETTISLNP--QWE----KGYF   79 (320)
Q Consensus         9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~----~~~~   79 (320)
                      ++..+|..++..|++++|.++|.++.....   .-.+++.....++...+++..+...++++-.+..  .++    ....
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            567899999999999999999999886532   2368899999999999999999999999876522  222    3445


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914           80 RKGCILEAMEQYDDALSAFQTALQYNPQ  107 (320)
Q Consensus        80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~  107 (320)
                      ..|.++...++|.+|...|-.++.....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            5678888899999999999888776443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.10  E-value=0.15  Score=48.45  Aligned_cols=103  Identities=14%  Similarity=-0.007  Sum_probs=52.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Q 020914           13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD   92 (320)
Q Consensus        13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~   92 (320)
                      ....+...|.+++|+...+        ++..-+   .....+|++++|.+..+     ..++...|..+|..+...++++
T Consensus       635 ~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~  698 (814)
T 3mkq_A          635 IARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFK  698 (814)
T ss_dssp             HHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHH
Confidence            3344455666666655432        222222   22345666666666542     2245566666666666666666


Q ss_pred             HHHHHHHHH--------HhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           93 DALSAFQTA--------LQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        93 ~A~~~~~~a--------l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      .|+++|.++        |.....+.+.+..++.+....|++..|...
T Consensus       699 ~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~  745 (814)
T 3mkq_A          699 LAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNA  745 (814)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHH
Confidence            666666664        111234444444555444444444444433

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.95  E-value=0.27  Score=39.89  Aligned_cols=63  Identities=14%  Similarity=0.015  Sum_probs=58.2

Q ss_pred             HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914           50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (320)
Q Consensus        50 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  112 (320)
                      ...+.|+.++|++.....++-+|.+......+-+++.-.|+++.|.+.++.+.+++|+....-
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            456789999999999999999999999999999999999999999999999999999876654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.48  E-value=0.17  Score=43.86  Aligned_cols=62  Identities=13%  Similarity=0.118  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS   69 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   69 (320)
                      .++..++..+...|++.+|+..+.+++..+|-+..+|..+-.++...|+..+|+..|+++-+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45667788889999999999999999999999999999999999999999999999988744

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.27  E-value=0.67  Score=43.97  Aligned_cols=99  Identities=13%  Similarity=-0.047  Sum_probs=66.9

Q ss_pred             HHHHHcCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914           15 NEFFKAGNYLKAAA-LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD   93 (320)
Q Consensus        15 ~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~   93 (320)
                      ......+++++|.+ .+.    .-| +..........+...|.+++|+...+        ++..   .-......|++++
T Consensus       607 ~~~~~~~~~~~a~~~~l~----~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~---~f~~~l~~~~~~~  670 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLP----NVE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQ---KFELALKVGQLTL  670 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGG----GCC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHH---HHHHHHHHTCHHH
T ss_pred             hHHHHhCCHHHHHHHHHh----cCC-chHHHHHHHHHHHhCCChHHheecCC--------Ccch---heehhhhcCCHHH
Confidence            34456788888876 431    111 02233667777888888888876652        2222   2334567899999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENI  134 (320)
Q Consensus        94 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  134 (320)
                      |.+..+     ..++...|..+|......++++.|+..+..
T Consensus       671 A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~  706 (814)
T 3mkq_A          671 ARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTN  706 (814)
T ss_dssp             HHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            988754     346788999999999999999998877653

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.27  E-value=1.2  Score=33.30  Aligned_cols=70  Identities=11%  Similarity=-0.000  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c---------------CCCCHH-HHHHHHHHHHHccCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIK--Q---------------DPSNPT-LFSNRAAAFLHLVKLNKALADAETT   67 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~---------------~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~a   67 (320)
                      .+-+.+-...|+....+|..|+.++++.++  +               +|.+.+ .+..+|..+.+.|+-++|+.++...
T Consensus        61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S  140 (242)
T 3kae_A           61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS  140 (242)
T ss_dssp             BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence            456777888999999999999999999993  2               344444 4667899999999999999999998


Q ss_pred             HhcCCCCH
Q 020914           68 ISLNPQWE   75 (320)
Q Consensus        68 l~l~p~~~   75 (320)
                      ....|-.+
T Consensus       141 f~~~~lf~  148 (242)
T 3kae_A          141 FGKSFLFS  148 (242)
T ss_dssp             HHHCCCHH
T ss_pred             cCCccccc
Confidence            88776443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.08  E-value=1.1  Score=39.60  Aligned_cols=99  Identities=14%  Similarity=0.038  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCCCH-
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-D-PSN----PTLFSNRAAAFLHLVKLNKALADAETTIS---LNPQWE-   75 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~-p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~-   75 (320)
                      .++....++.++...|++.+|...+.....- . ..+    .+.+......|...+++.+|...++++..   -.+..+ 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            4566778999999999999999999887531 1 111    57888899999999999999999988742   233333 


Q ss_pred             ---HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           76 ---KGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        76 ---~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                         ..+...|.++...++|.+|-.+|..++..
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               45677899999999999999999988764

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=93.11  E-value=2.3  Score=41.54  Aligned_cols=95  Identities=7%  Similarity=-0.110  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIK-----QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFR   80 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~   80 (320)
                      ..+..+-+.+.+.|+.++|...|.+.-+     ..| +...|..+-..|.+.|+.++|.+.|++..+.  .| +...|..
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYnt  205 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence            3577777899999999999999977543     344 6889999999999999999999999999875  45 6667777


Q ss_pred             HHHHHHHccCH-HHHHHHHHHHHhh
Q 020914           81 KGCILEAMEQY-DDALSAFQTALQY  104 (320)
Q Consensus        81 lg~~~~~~~~~-~~A~~~~~~al~~  104 (320)
                      +-.++.+.|+. ++|.+.|++..+.
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            77788888985 7888999988875

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.66  E-value=0.63  Score=46.43  Aligned_cols=114  Identities=18%  Similarity=0.085  Sum_probs=82.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---C-------------------
Q 020914           14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---N-------------------   71 (320)
Q Consensus        14 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~-------------------   71 (320)
                      ...+...|.++-|...    +..-|.++..-+-+|.++...|++++|..+|+++-.-   +                   
T Consensus       819 ~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~  894 (1139)
T 4fhn_B          819 VEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH  894 (1139)
T ss_dssp             HHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred             HHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence            3445566666655442    3456777888899999999999999999999887321   1                   


Q ss_pred             -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-HH----HHHHHHHHHHHHHHHHHHHHH
Q 020914           72 -PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-AE----VSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        72 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~----~~~~l~~~~~~~~~~~~A~~~  131 (320)
                       ...+..|+....++...+.++.+++.-+.|++..+.+ ..    .|..+-......+++++|...
T Consensus       895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a  960 (1139)
T 4fhn_B          895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA  960 (1139)
T ss_dssp             CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred             cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence             1123456777888889999999999999999876543 32    466666667777888887544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.51  E-value=0.99  Score=45.03  Aligned_cols=94  Identities=12%  Similarity=-0.009  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C--------------------CCCHHHHHHHHHHHHHccCHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ---D--------------------PSNPTLFSNRAAAFLHLVKLNKALAD   63 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~--------------------p~~~~~~~~lg~~~~~~g~~~~A~~~   63 (320)
                      +-.-+-+|.+++..|++++|..+|++|-.-   +                    ...+..|......+.+.|.++.++++
T Consensus       842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f  921 (1139)
T 4fhn_B          842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF  921 (1139)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            334588999999999999999999987321   0                    11235677788899999999999999


Q ss_pred             HHHHHhcCC-CCH----HHHHHHHHHHHHccCHHHHHHHHHH
Q 020914           64 AETTISLNP-QWE----KGYFRKGCILEAMEQYDDALSAFQT  100 (320)
Q Consensus        64 ~~~al~l~p-~~~----~~~~~lg~~~~~~~~~~~A~~~~~~  100 (320)
                      .+.||+..+ ++.    ..|.++=..+..+|+|++|...+..
T Consensus       922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            999998754 433    2577778888999999999877643

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.39  E-value=0.17  Score=45.27  Aligned_cols=67  Identities=16%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  109 (320)
                      +.++..+-..|...+.|++|.....++.  .|..       ...++..|.++...++|.+|.+++..|+...|.+.
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            6778889999999999999999999985  4432       45677889999999999999999999999888653

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.16  E-value=0.27  Score=43.29  Aligned_cols=59  Identities=15%  Similarity=0.168  Sum_probs=39.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                      -..++..+|..|...|++++|.+.|.++.....+.   .+.+..+.++....+++..+....
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~  191 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKL  191 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            34567778888888888888888888777653332   355555666666677777765553

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.54  E-value=1.8  Score=32.67  Aligned_cols=54  Identities=22%  Similarity=0.079  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA  101 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  101 (320)
                      +++..+.++   ...|+++.|.+..+..     ++...|..+|......|+++-|..+|+++
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            456666665   4689999999987765     67899999999999999999999999985

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=89.62  E-value=1.7  Score=40.01  Aligned_cols=80  Identities=10%  Similarity=-0.071  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914           23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL  102 (320)
Q Consensus        23 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  102 (320)
                      ..++...+.++....+++...-...+. -.+.|+++.|...|++.-.-.+......|-+|.++..+|+.++|...|+++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~e~~~r~-Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          268 TDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             CHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhccccCCChHHHHHHHHH-HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            344555555544333322222222233 3345777777777766544333456667777777777777777777777765


Q ss_pred             h
Q 020914          103 Q  103 (320)
Q Consensus       103 ~  103 (320)
                      .
T Consensus       347 ~  347 (618)
T 1qsa_A          347 Q  347 (618)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=87.50  E-value=9  Score=37.55  Aligned_cols=91  Identities=4%  Similarity=-0.197  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISL----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN-PQSAEVSRKIK  116 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~  116 (320)
                      ..+..+-..|.+.|+.++|...|...-+.    -.-+...|..+-..|.+.|+.++|.+.|++..+.. .-+..+|..+-
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            45888889999999999999999775432    23367799999999999999999999999998752 23666777777


Q ss_pred             HHHHHHHH-HHHHHHHH
Q 020914          117 RVSQLAKD-KKRAQEVE  132 (320)
Q Consensus       117 ~~~~~~~~-~~~A~~~~  132 (320)
                      ..+...|+ .++|.++.
T Consensus       208 ~glcK~G~~~e~A~~Ll  224 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCL  224 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHH
Confidence            77777676 35665553

>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*

Probab=86.76  E-value=1.7  Score=28.30  Aligned_cols=33  Identities=27%  Similarity=0.523  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ   36 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~   36 (320)
                      ...++.+...|.-++..++|.+|...|+++..+
T Consensus        50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~   82 (106)
T 2vkj_A           50 EKKARSLIAEGKDLFETANYGEALVFFEKALNL   82 (106)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence            356788888888888888888888888888754

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.06  E-value=2.2  Score=38.19  Aligned_cols=68  Identities=13%  Similarity=0.088  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW   74 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   74 (320)
                      ..+..+..+-..|...+.|++|..+..++.  .|..       +..++.+|.++...++|.+|.+++..|+...|.+
T Consensus       229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            345567777888999999999999999984  4432       4668889999999999999999999999988754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.88  E-value=12  Score=36.39  Aligned_cols=94  Identities=21%  Similarity=0.087  Sum_probs=68.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCC-------------------
Q 020914           13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS-LNP-------------------   72 (320)
Q Consensus        13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~p-------------------   72 (320)
                      +...+...|.++-|.+    .+..-|.++..-+-+|.+|...|++++|..+|++|-. +.+                   
T Consensus       816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e  891 (950)
T 4gq2_M          816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  891 (950)
T ss_dssp             HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred             HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence            4556667777765543    4566778888888999999999999999999987642 110                   


Q ss_pred             -C--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHH
Q 020914           73 -Q--WEKGYFRKGCILEAMEQYDDALSAFQTALQY-NPQSAE  110 (320)
Q Consensus        73 -~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~  110 (320)
                       +  ....|.....++...+-++-+++.-+.|+.. .+++..
T Consensus       892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~  933 (950)
T 4gq2_M          892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED  933 (950)
T ss_dssp             TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred             ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence             1  1235667788888889999999999999975 344444

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=84.79  E-value=1.7  Score=28.42  Aligned_cols=31  Identities=16%  Similarity=0.279  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIK   35 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~   35 (320)
                      ..+..+...|...-..|+|++|+.+|..+++
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie   44 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGID   44 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445556666666666666666666665553

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.52  E-value=20  Score=31.40  Aligned_cols=104  Identities=11%  Similarity=-0.063  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhh-CC-CC----HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHhHHHHH
Q 020914           76 KGYFRKGCILEAMEQYDDALSAFQTALQY-NP-QS----AEVSRKIKRVSQLAKDKKRAQEVENIRS-NVDMVQHLDEFK  148 (320)
Q Consensus        76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~  148 (320)
                      .....++.+|...|++.+|...+.....- .. .+    .+.+....+++...+++.+|..+..... ............
T Consensus       138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk  217 (445)
T 4b4t_P          138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK  217 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence            34577899999999999999988887532 11 11    3456666778888888888876643211 111112223344


Q ss_pred             HHHhhhhcchhhhhhHHHHHHHHHHHHHHhH
Q 020914          149 SEMSEKYGAEECWKHVFSFVVETMETAVKSW  179 (320)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~  179 (320)
                      .......|..+...+.+..+-..|-++...+
T Consensus       218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          218 LEYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence            5555566666666666666666666655443

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=83.59  E-value=6.9  Score=25.30  Aligned_cols=30  Identities=23%  Similarity=0.132  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIK   35 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~   35 (320)
                      .+..+..+|...-..|+|++|+.+|.++++
T Consensus        18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           18 MARKYAINAVKADKEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            444566666666666666666666666554

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=82.47  E-value=5.5  Score=25.04  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=25.1

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914           79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (320)
Q Consensus        79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  112 (320)
                      ..+|..+...|++++|+.+|-+|+...|.-....
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL   54 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL   54 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            4567777778888888888888888877665544

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=82.27  E-value=1.7  Score=28.27  Aligned_cols=17  Identities=12%  Similarity=0.407  Sum_probs=7.7

Q ss_pred             HccCHHHHHHHHHHHHh
Q 020914           87 AMEQYDDALSAFQTALQ  103 (320)
Q Consensus        87 ~~~~~~~A~~~~~~al~  103 (320)
                      ..|+|++|+.+|..+++
T Consensus        31 ~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           31 KEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHH
Confidence            34444444444444433

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=82.12  E-value=13  Score=34.35  Aligned_cols=123  Identities=7%  Similarity=-0.134  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914           10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus        10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      ....+...+...+.+.|...+.+.....+-+.    ..+..+|.-....+...++...+.++....+++...-...+.+ 
T Consensus       217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~A-  295 (618)
T 1qsa_A          217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-  295 (618)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHH-
Confidence            34445566666788999999987754332222    2222333333334435677777777665554444444444444 


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                      ...|+++.|...|.+.-.-.+......+.+|......|+.++|..++.
T Consensus       296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~  343 (618)
T 1qsa_A          296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILH  343 (618)
T ss_dssp             HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            467999999999987655444567788999999999999999877643

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=82.00  E-value=7.7  Score=27.99  Aligned_cols=81  Identities=10%  Similarity=-0.068  Sum_probs=57.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 020914           20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ   99 (320)
Q Consensus        20 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~   99 (320)
                      -|+...-+.+|-+.   +- +.+..-.--..+..+|+-++--+.+...+.-+|-++..++.+|.+|.++|+..+|-+.+.
T Consensus        74 C~NlKrVi~C~~~~---n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~  149 (172)
T 1wy6_A           74 CQNLKSVVECGVIN---NT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI  149 (172)
T ss_dssp             CSCTHHHHHHHHHT---TC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhcHHHHHHHHHHh---cc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence            46777777777653   22 222222222455677888887777777777777789999999999999999999999998


Q ss_pred             HHHhh
Q 020914          100 TALQY  104 (320)
Q Consensus       100 ~al~~  104 (320)
                      +|=+.
T Consensus       150 ~AC~k  154 (172)
T 1wy6_A          150 EACKK  154 (172)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88764

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=81.55  E-value=10  Score=29.23  Aligned_cols=78  Identities=10%  Similarity=0.046  Sum_probs=59.2

Q ss_pred             HHHHHHHhc---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHH
Q 020914           28 ALYTQAIKQ---------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRKGCILEAMEQYDDALS   96 (320)
Q Consensus        28 ~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~~~~~~A~~   96 (320)
                      ..+++++..         ||....+|...+..+ ..+...++.+.|......  .-..+..|...|..+...|++.+|.+
T Consensus        58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~  136 (202)
T 3esl_A           58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV  136 (202)
T ss_dssp             HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            467777653         333357788777765 234467888888777654  55678899999999999999999999


Q ss_pred             HHHHHHhhCC
Q 020914           97 AFQTALQYNP  106 (320)
Q Consensus        97 ~~~~al~~~p  106 (320)
                      .|+.+++..-
T Consensus       137 Vy~~GI~~~A  146 (202)
T 3esl_A          137 LLELGAENNC  146 (202)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHcCC
Confidence            9999998753

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=81.48  E-value=1.8  Score=28.07  Aligned_cols=13  Identities=15%  Similarity=-0.028  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHhc
Q 020914           58 NKALADAETTISL   70 (320)
Q Consensus        58 ~~A~~~~~~al~l   70 (320)
                      ++|+....+|++.
T Consensus         9 ~~Ai~lv~~Ave~   21 (83)
T 2v6y_A            9 DMARKYAILAVKA   21 (83)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3555555555444

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=80.24  E-value=3.6  Score=27.00  Aligned_cols=23  Identities=17%  Similarity=0.348  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q 020914           10 LKDKGNEFFKAGNYLKAAALYTQ   32 (320)
Q Consensus        10 ~~~~g~~~~~~g~~~~A~~~~~~   32 (320)
                      .-.++..+...|+|++||++.++
T Consensus        18 ~~RrAe~ll~~gkydeAIech~k   40 (97)
T 2crb_A           18 QSRRADRLLAAGKYEEAISCHRK   40 (97)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHH
Confidence            34445555555555555555443

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=80.08  E-value=5.4  Score=30.89  Aligned_cols=36  Identities=8%  Similarity=0.016  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN   40 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~   40 (320)
                      +.+.-.+-+|..++.+++|.+|.+.+..|+...|..
T Consensus        12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~   47 (203)
T 3t5x_A           12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS   47 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence            344455555555555566666666655555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	320
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	7e-17
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-12
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-11
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-11
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	4e-11
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	3e-10
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	5e-10
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	8e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-06
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	5e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.001
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	5e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	9e-04

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.4 bits (184), Expect = 7e-17
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 2/159 (1%)

Query: 4   EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
            A+E  LK++GN  F    Y +AAA Y +AI ++P     ++NRA  +L + +  +ALAD
Sbjct: 3   SAQE--LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 64  AETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123
               + L+ Q  K +F  G     ME YD+A++  Q A     +           +    
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

Query: 124 DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 162
            KKR   +E  R + +   H    +   +E+    E  +
Sbjct: 121 KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQ 159

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 4e-13
 Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 8/127 (6%)

Query: 6   EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
           + +  K+ GN+ +K  ++  A   Y +A + DP+N T  +N+AA +      NK     E
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 66  TTISLNPQWEKGY-------FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
             I +  +  + Y        R G      E+Y DA+  +  +L  +  + +V +K ++ 
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121

Query: 119 SQLAKDK 125
            ++ K++
Sbjct: 122 EKILKEQ 128

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 9e-13
 Identities = 23/123 (18%), Positives = 43/123 (34%)

Query: 8   MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
           +   +    +++ G    A   Y +AI+  P  P  + N A A      + +A     T 
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297

Query: 68  ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127
           + L P           I       ++A+  ++ AL+  P+ A     +  V Q     + 
Sbjct: 298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357

Query: 128 AQE 130
           A  
Sbjct: 358 ALM 360

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 1e-11
 Identities = 20/121 (16%), Positives = 42/121 (34%)

Query: 13  KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
            G  F   G    A   + +A+  DP+    + N           ++A+A     +SL+P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132
                +    C+       D A+  ++ A++  P   +    +    +       A++  
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294

Query: 133 N 133
           N
Sbjct: 295 N 295

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 14/82 (17%), Positives = 33/82 (40%)

Query: 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
            +  +  ++AG++  A     Q  +Q+P N  +    ++      +L+++   +   I 
Sbjct: 2  PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 70 LNPQWEKGYFRKGCILEAMEQY 91
           NP   + Y   G + +   Q 
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQL 83

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 4e-11
 Identities = 16/102 (15%), Positives = 44/102 (43%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           +  +  N   + G+  +A   Y  A++  P++    +N A        + +A+      +
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
            + P++   +     +L+   +  +AL  ++ A++ +P  A+
Sbjct: 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 7e-09
 Identities = 23/122 (18%), Positives = 48/122 (39%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
           +  + GN   +A  + +A A Y +A+   P++  +  N A  +     ++ A+      I
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128
            L P +   Y      L+      +A   + TAL+  P  A+    +  + +   + + A
Sbjct: 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324

Query: 129 QE 130
             
Sbjct: 325 VR 326

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 8e-09
 Identities = 21/76 (27%), Positives = 34/76 (44%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
            N   + GN  +A  LY +A++  P      SN A+      KL +AL   +  I ++P 
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 74  WEKGYFRKGCILEAME 89
           +   Y   G  L+ M+
Sbjct: 372 FADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 5/139 (3%)

Query: 30  YTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89
           Y +AI+  P+    +SN    F    ++  A+   E  ++L+P +   Y   G +L+   
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217

Query: 90  QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE-----VENIRSNVDMVQHL 144
            +D A++A+  AL  +P  A V   +  V         A +     +E      D   +L
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277

Query: 145 DEFKSEMSEKYGAEECWKH 163
                E      AE+C+  
Sbjct: 278 ANALKEKGSVAEAEDCYNT 296

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 5e-12
 Identities = 37/110 (33%), Positives = 60/110 (54%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
            LK+KGN+    GN   A   Y++AIK DP N  L+SNR+AA+       KA  D   T+
Sbjct: 5   ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 64

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
            L P W KGY RK   LE + ++++A   ++  L++   + ++   ++ +
Sbjct: 65  DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 1e-11
 Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 3/110 (2%)

Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
            E +SL ++G       ++  A   ++        +  +  N    +  L  + +A    
Sbjct: 3   VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAF 59

Query: 65  ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
             +I+ +      YF++G +    E+YD A+   + AL     +  +  K
Sbjct: 60  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 109

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 61.6 bits (149), Expect = 1e-11
 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 5/139 (3%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
                  G   +A  L  +AIK  P + +L S+            +A      +I L P+
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK-----KRA 128
           +  G  +   +++A +   D      TA             +     +         + A
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122

Query: 129 QEVENIRSNVDMVQHLDEF 147
            ++E +R     + +   F
Sbjct: 123 LQIEELRQEKGFLANDTSF 141

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 59.6 bits (143), Expect = 2e-11
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 15/136 (11%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQA---------------IKQDPSNPTLFSNRAAAFLH 53
            +K+KG  +FK G Y++A   Y +                   +      F N A  +L 
Sbjct: 17  IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 76

Query: 54  LVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113
           L +  KA+   +  + L+   EKG +R+G     M +++ A   F+  L+ NPQ+     
Sbjct: 77  LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 136

Query: 114 KIKRVSQLAKDKKRAQ 129
           +I    + AK+     
Sbjct: 137 QIFMCQKKAKEHNERD 152

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.6 bits (140), Expect = 4e-11
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 16/137 (11%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQA----------------IKQDPSNPTLFSNRAAAFL 52
            LK+ GN FFK+ N+  A   YT+                  K  P   +   N  A  L
Sbjct: 29  DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL 88

Query: 53  HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
            +     A+      + ++P   K  +R+    + +++YD AL+  + A +  P+   + 
Sbjct: 89  KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ 148

Query: 113 RKIKRVSQLAKDKKRAQ 129
            ++ +V Q  K +K  +
Sbjct: 149 AELLKVKQKIKAQKDKE 165

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 3e-10
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 2/143 (1%)

Query: 3   AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62
             AEE  LK + N++FKA +Y  A   Y+QAI+ +PSN   + NR+ A+L       AL 
Sbjct: 8   KRAEE--LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 65

Query: 63  DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122
           DA   I L+ ++ KGY+R+     A+ ++  AL  ++T ++  P   +   K +  +++ 
Sbjct: 66  DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 125

Query: 123 KDKKRAQEVENIRSNVDMVQHLD 145
           K K   + +        +V  LD
Sbjct: 126 KQKAFERAIAGDEHKRSVVDSLD 148

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 55.0 bits (131), Expect = 5e-10
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 16/135 (11%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----------------TLFSNRAAAFL 52
            +K++GNEFFK     +A   Y +A+                       +   N A  + 
Sbjct: 19  DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN 78

Query: 53  HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112
                 KA+  A   + ++    K  ++ G         ++A      A   NP + ++ 
Sbjct: 79  KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 138

Query: 113 RKIKRVSQLAKDKKR 127
              +      K+ ++
Sbjct: 139 NSYELCVNKLKEARK 153

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 8e-09
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQA---------------IKQDPSNPTLFSNRAAAFLH 53
            +K++G  +FK G Y +A   Y +                 K          N A   L 
Sbjct: 15  IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 74

Query: 54  LVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113
           L   + A+      + L+   EKG  R+G    A+  ++ A + FQ  LQ  P +     
Sbjct: 75  LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 134

Query: 114 KIKRVSQLAKDKKRAQE 130
           ++    Q  + +   ++
Sbjct: 135 QLAVCQQRIRRQLAREK 151

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 3e-08
 Identities = 19/152 (12%), Positives = 50/152 (32%)

Query: 12  DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
           ++G    + G+   A  L+  A++QDP +   +           +   A++     + L 
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131
           P  +                  A    +  L+Y P  A +    +  +  A      + +
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143

Query: 132 ENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163
            ++ S+   ++  + F + +     + +    
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 175

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 2e-07
 Identities = 12/136 (8%), Positives = 39/136 (28%), Gaps = 4/136 (2%)

Query: 9   SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
                G    K  +        + +      +     +      +  + ++A +      
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYRHAA 179

Query: 69  SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128
            L P   + Y +   +  +   +   +  +  ++         S  +++   L+K  +  
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA--LSKALESR 237

Query: 129 QEVENIRSNVDMVQHL 144
            EV+      D ++  
Sbjct: 238 DEVKTKWGVSDFIKAF 253

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 13/151 (8%), Positives = 31/151 (20%), Gaps = 38/151 (25%)

Query: 24  LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---------- 73
           L++A    QA              A  +     L       +  +  + +          
Sbjct: 3   LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLY---QKMLVTDLEYALDKKVEQD 59

Query: 74  -WEKGY------FRK------------------GCILEAMEQYDDALSAFQTALQYNPQS 108
            W   +       +                     +  A   Y   L    T    +   
Sbjct: 60  LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC 119

Query: 109 AEVSRKIKRVSQLAKDKKRAQEVENIRSNVD 139
              S ++  +S          + ++   +  
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI 150

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 44.4 bits (103), Expect = 2e-06
 Identities = 19/144 (13%), Positives = 49/144 (34%), Gaps = 23/144 (15%)

Query: 5   AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS------------NPTLFSNRAAAFL 52
                          AG Y +AAA   +A++   +            +    +  A A  
Sbjct: 7   VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 66

Query: 53  HLVKLNKALADAETTISLNPQWEKG-----------YFRKGCILEAMEQYDDALSAFQTA 101
            L   ++AL  A+  +    +  +             + +   L+ + +  +A+  F+  
Sbjct: 67  GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126

Query: 102 LQYNPQSAEVSRKIKRVSQLAKDK 125
           ++   +    +   +R+ ++A D+
Sbjct: 127 VEMIEERKGETPGKERMMEVAIDR 150

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 3e-06
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 1/97 (1%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLNP 72
                +     +A  L   AI+ + +N T++  R      L K L++ +      I   P
Sbjct: 50  RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109

Query: 73  QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109
           +  + +  +  ++E +      L      L  + ++ 
Sbjct: 110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 146

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.0 bits (105), Expect = 5e-06
 Identities = 12/121 (9%), Positives = 30/121 (24%)

Query: 12  DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
           +     F      ++A  Y + +                   L    ++  + +     N
Sbjct: 213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272

Query: 72  PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131
                        L+ +    + L  F T    +P  A     ++    L     + +  
Sbjct: 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 332

Query: 132 E 132
           +
Sbjct: 333 D 333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 16/116 (13%), Positives = 34/116 (29%), Gaps = 6/116 (5%)

Query: 15  NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNK-----ALADAETTIS 69
           NE     + LK    +         + +     A   +     +       L +      
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV-SQLAKD 124
              +     F        +++Y+ AL   +  LQ  PQ+ +     + +   + KD
Sbjct: 67  SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 122

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 22/154 (14%), Positives = 48/154 (31%)

Query: 10  LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
           L ++G  +   G    A   ++QA+   P  P +F+            + A    ++ + 
Sbjct: 40  LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 99

Query: 70  LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129
           L+P +   +  +G  L    +   A        Q +P     S  +    Q   +K+  +
Sbjct: 100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE 159

Query: 130 EVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163
            ++      D  Q               +   + 
Sbjct: 160 VLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 193

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 1/112 (0%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
             +        +    + +   ++     +             + +  ADA    SL   
Sbjct: 148 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 207

Query: 74  WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAKD 124
             +  F  G    ++   D A + F+ A+  N  +    R     +S L +D
Sbjct: 208 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 259

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 15/135 (11%), Positives = 38/135 (28%), Gaps = 5/135 (3%)

Query: 32  QAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-----KGYFRKGCILE 86
           + I++D  +    + RA   ++    ++A   A+  +   P              G +L 
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 87  AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE 146
              +   +L+  Q   Q   Q       +  + Q ++       ++      +    L  
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 122

Query: 147 FKSEMSEKYGAEECW 161
            +             
Sbjct: 123 EQHLEQLPMHEFLVR 137

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 9e-04
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 14  GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA-------ET 66
            +     G Y++A+ +Y++ IK    N     +    FL       A  DA       + 
Sbjct: 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224

Query: 67  TISLNPQWEKGYFRKGC--ILEAMEQ-----YDDALSAFQTALQYNPQSAEVSRKIKR 117
             S +P +           +++A+ +       +    F   ++ +     +  KIK 
Sbjct: 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	320
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.96
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.93
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.9
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.88
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.88
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.84
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.84
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.84
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.84
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.83
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.83
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.82
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.81
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.81
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.81
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.77
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.77
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.77
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.75
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.7
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.65
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.64
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.64
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.63
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.62
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.6
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.57
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.56
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.56
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.52
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.52
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.45
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.44
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.42
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.41
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.4
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.34
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.34
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.19
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.18
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.17
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.94
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.93
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.87
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.74
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.71
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.24
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.0
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	88.67
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.43
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	87.95
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	87.63
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	84.12
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	82.77
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	80.53
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	80.12

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.1e-29  Score=214.72  Aligned_cols=269  Identities=12%  Similarity=0.102  Sum_probs=172.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----------
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP----------   72 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p----------   72 (320)
                      .|+++.++..+|.+++..|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..+.+++..+|          
T Consensus        29 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  108 (388)
T d1w3ba_          29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA  108 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccc
Confidence            3555566666666666666666666666666666666666666666666666666666665555544332          


Q ss_pred             ----------------------------------------------------------CCHHHHHHHHHHHHHccCHHHH
Q 020914           73 ----------------------------------------------------------QWEKGYFRKGCILEAMEQYDDA   94 (320)
Q Consensus        73 ----------------------------------------------------------~~~~~~~~lg~~~~~~~~~~~A   94 (320)
                                                                                +++.++..+|.++...|++++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  188 (388)
T d1w3ba_         109 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA  188 (388)
T ss_dssp             HHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHH
Confidence                                                                      3344455556666666666666


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHH
Q 020914           95 LSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMET  174 (320)
Q Consensus        95 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  174 (320)
                      +..++++++++|++..++..+|.++...|++++|+.....  .    ....+........+|.++...|.+..|+..+++
T Consensus       189 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  262 (388)
T d1w3ba_         189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR--A----LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR  262 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH--H----HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHH--h----HHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            6666666666666666666666666666666666554321  1    111112223333445555555555555555555


Q ss_pred             HHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCC
Q 020914          175 AVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIIS  248 (320)
Q Consensus       175 a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~  248 (320)
                      +++..+......-   .++...|++.+|+..++.++...|.....+. +|.++...+++  |++.|++++++     +|.
T Consensus       263 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~  337 (388)
T d1w3ba_         263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-----FPE  337 (388)
T ss_dssp             HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-----CTT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC
Confidence            4443222111100   1788889999999999999998887654444 88888889999  99999999988     777


Q ss_pred             hhHhhhcccccccccCcccchhhhcccccccccc
Q 020914          249 YPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLW  282 (320)
Q Consensus       249 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  282 (320)
                      ++.+|+++|.++..+|+++++...+++.+...|.
T Consensus       338 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            8999999999999999999998888776654443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.8e-27  Score=202.09  Aligned_cols=252  Identities=15%  Similarity=0.172  Sum_probs=208.3

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------------------------------------
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP--------------------------------------------   38 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------------------------------   38 (320)
                      +|.++.++..+|.++...|++++|+..+.++++.+|                                            
T Consensus        63 ~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (388)
T d1w3ba_          63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG  142 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            577888999999999999999999998887776544                                            


Q ss_pred             ------------------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 020914           39 ------------------------SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA   94 (320)
Q Consensus        39 ------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A   94 (320)
                                              +++.++..+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  222 (388)
T d1w3ba_         143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA  222 (388)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred             ccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHH
Confidence                                    45678888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHH
Q 020914           95 LSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMET  174 (320)
Q Consensus        95 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  174 (320)
                      +..|++++.++|.....+..+|.++...|++++|+..+.  ..+..    .+....+...+|.++...|.+..|...++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  296 (388)
T d1w3ba_         223 VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR--RAIEL----QPHFPDAYCNLANALKEKGSVAEAEDCYNT  296 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHT----CSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999999999999977642  22222    223344555667777777777777777776


Q ss_pred             HHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCC
Q 020914          175 AVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIIS  248 (320)
Q Consensus       175 a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~  248 (320)
                      +....+.......   .++...|++++|++.|+++++++|.....+. +|.++...|++  |+++|++|+++     +|+
T Consensus       297 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l-----~P~  371 (388)
T d1w3ba_         297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPT  371 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-----CTT
T ss_pred             hhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC
Confidence            6655443222111   1888999999999999999999998765555 89999999999  99999999999     888


Q ss_pred             hhHhhhcccccccccCc
Q 020914          249 YPQVWRGQGLRKWRHSQ  265 (320)
Q Consensus       249 ~~~~~~~~~~~~~~l~~  265 (320)
                      ++++|.++|.++.++|+
T Consensus       372 ~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         372 FADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHcCC
Confidence            89999999999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.1e-27  Score=199.88  Aligned_cols=242  Identities=14%  Similarity=0.095  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE   86 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   86 (320)
                      ....+.+|..++..|++++|+.+|+++++.+|+++.+|..+|.++..+|++++|+..|+++++++|+++.+|..+|.+|.
T Consensus        19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT   98 (323)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccc
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHH
Q 020914           87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS  166 (320)
Q Consensus        87 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (320)
                      .+|++++|++.+++++.++|+................ ....                        ..........+.+.
T Consensus        99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------------------~~~~~~~~~~~~~~  153 (323)
T d1fcha_          99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG-LGPS------------------------KRILGSLLSDSLFL  153 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------------CTTHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHhccchHHHHHhhhhhhhhcc-cccc------------------------hhhHHHHHHhhHHH
Confidence            9999999999999999999987554322111100000 0000                        00000011112222


Q ss_pred             HHHHHHHHHHHhHhhccccC-----hhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHh
Q 020914          167 FVVETMETAVKSWHETSKVD-----AKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAA  238 (320)
Q Consensus       167 ~a~~~~~~a~~~~~~~~~~~-----~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al  238 (320)
                      .+...+.+++...+......     ..++..+|++++|+..+++++.++|.....+. +|.++...|++  |+..|++++
T Consensus       154 ~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  233 (323)
T d1fcha_         154 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL  233 (323)
T ss_dssp             HHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHH
Confidence            23333333332221111000     01455566666666666666666665544443 66666666666  666666666


Q ss_pred             chhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914          239 CLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL  278 (320)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  278 (320)
                      ++     +|.++.+|+++|.++..+|++++++..+++++.
T Consensus       234 ~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         234 EL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HH-----hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66     555566666666666666666666655555433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.7e-24  Score=177.00  Aligned_cols=130  Identities=15%  Similarity=0.170  Sum_probs=120.1

Q ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      +.|..+..++.+|.++...|++++|+..|+++|+++|+++.+|+++|.+|..+|++++|+..|+++++++|+++.+++++
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      |.++..+|++++|++.|+++++++|++......++......+..+.+..+
T Consensus       112 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
T d1xnfa_         112 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVL  161 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999888887776666555544333

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-23  Score=177.51  Aligned_cols=231  Identities=12%  Similarity=0.038  Sum_probs=172.4

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      +|+.++++..+|.++...+.+++|+.++++||+++|++..+|+++|.++..+|+ +++|+.+++++++++|++..+|+.+
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            688899999999999999999999999999999999999999999999999875 9999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW  161 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (320)
                      |.++..+|++++|++.|+++++++|++..+|..+|.++...|++++|++..  ...+...+.    ....+...|.+...
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~--~~al~~~p~----n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV--DQLLKEDVR----NNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH--HHHHHHCTT----CHHHHHHHHHHHHH
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHCCc----cHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999997764  233332222    11222222222211


Q ss_pred             hhHHHHHHHHHHHHHHhHhhccccChh---H------HhhhcChhHHHHhhhhhhccccCcCCccc---hhhHHHHhhH-
Q 020914          162 KHVFSFVVETMETAVKSWHETSKVDAK---V------YFLLDKEKTDTEKYAPIVNVDKAFESPHT---HGSCFQFLRQ-  228 (320)
Q Consensus       162 ~~~~~~a~~~~~~a~~~~~~~~~~~~~---~------~~~lg~~~~A~~~~~~a~~~~~~~~~~~~---~g~~~~~~~~-  228 (320)
                      .+.. ...+.+++|+..+.+++.+.|.   +      ........++.+.++.++++.|.....+.   ++.++....+ 
T Consensus       193 ~~~~-~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~  271 (315)
T d2h6fa1         193 TTGY-NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLEN  271 (315)
T ss_dssp             TTCS-CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHT
T ss_pred             cccc-chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhc
Confidence            1110 0123345555566666666664   1      22233467888888888888887654432   3333433322 


Q ss_pred             -H--HHHHHHHHhch
Q 020914          229 -Y--ADDSFSSAACL  240 (320)
Q Consensus       229 -~--A~~~~~~al~~  240 (320)
                       .  +...|++|+.+
T Consensus       272 ~~~~~~~~~~ka~~l  286 (315)
T d2h6fa1         272 QCDNKEDILNKALEL  286 (315)
T ss_dssp             TCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence             1  66666666654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.4e-22  Score=144.74  Aligned_cols=114  Identities=32%  Similarity=0.574  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      .+..+...|+.++..|+|++|+.+|+++|+.+|+++.+|.++|.+|..+|++++|+..|+++++++|+++.+|+++|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      ..+|++++|+..|+++++++|+++.++..++.+.
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            9999999999999999999999999999988775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2e-22  Score=171.04  Aligned_cols=205  Identities=13%  Similarity=0.096  Sum_probs=162.5

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH----
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY----   78 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~----   78 (320)
                      +|.++.+|+.+|.++...|++++|+.+|.++++++|+++.++..+|.+|..+|++++|+..+++++..+|+....+    
T Consensus        49 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  128 (323)
T d1fcha_          49 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE  128 (323)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhh
Confidence            6889999999999999999999999999999999999999999999999999999999999999999999754321    


Q ss_pred             -----------HHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHH
Q 020914           79 -----------FRKGCILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD  145 (320)
Q Consensus        79 -----------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  145 (320)
                                 ......+...+.+.+|++.|+++++++|+.  +.++..+|.++...|++++|+....  ..+...+.  
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~al~~~p~--  204 (323)
T d1fcha_         129 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT--AALSVRPN--  204 (323)
T ss_dssp             ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCTT--
T ss_pred             hhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccc--cccccccc--
Confidence                       122233456688999999999999999875  6778889999999999998866532  11111110  


Q ss_pred             HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHH
Q 020914          146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQ  224 (320)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~  224 (320)
                        ...++..+                               ..++..+|++++|++.|+++++++|.....+. +|.++.
T Consensus       205 --~~~~~~~l-------------------------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  251 (323)
T d1fcha_         205 --DYLLWNKL-------------------------------GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  251 (323)
T ss_dssp             --CHHHHHHH-------------------------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             --cccchhhh-------------------------------hhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence              11111111                               12677888889999999999988888765555 899999


Q ss_pred             HhhHH--HHHHHHHHhchhCCC
Q 020914          225 FLRQY--ADDSFSSAACLVAPK  244 (320)
Q Consensus       225 ~~~~~--A~~~~~~al~~~~~~  244 (320)
                      .+|++  |+..|++|+++.|.+
T Consensus       252 ~~g~~~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         252 NLGAHREAVEHFLEALNMQRKS  273 (323)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HCCCHHHHHHHHHHHHHhCCcC
Confidence            99999  999999999985443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.1e-21  Score=146.17  Aligned_cols=125  Identities=30%  Similarity=0.532  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      ..++.+..+|+.++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+.+|+++|+++|+++.+|+.+|.+
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH--HHHHHH
Q 020914           85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK--DKKRAQ  129 (320)
Q Consensus        85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~A~  129 (320)
                      +..+|++++|+.+|+++++++|+++.++..++.+....+  .+++++
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~  134 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI  134 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998887765443  344443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=9.1e-22  Score=168.12  Aligned_cols=243  Identities=7%  Similarity=-0.060  Sum_probs=174.1

Q ss_pred             chHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHhc
Q 020914            3 AEAEEMSLKDKGNEFFKA----------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK--LNKALADAETTISL   70 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l   70 (320)
                      +|++..+|..++.++...          |++++|+.+++++++.+|+++.+|..+|.++..+++  +++|+..+++++.+
T Consensus        59 ~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  138 (334)
T d1dcea1          59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  138 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh
Confidence            688888887777776544          448999999999999999999999999999999876  89999999999999


Q ss_pred             CCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHH
Q 020914           71 NPQWEKGY-FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS  149 (320)
Q Consensus        71 ~p~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  149 (320)
                      +|++..++ +.+|.++...+.+++|+..++++++++|++..+|..+|.++...|++++|+...  .......+    ...
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~--~~~~~~~~----~~~  212 (334)
T d1dcea1         139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG--RLPENVLL----KEL  212 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC--SSCHHHHH----HHH
T ss_pred             CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH--HHhHHhHH----HHH
Confidence            99999886 577899999999999999999999999999999999999999999988874332  11111111    111


Q ss_pred             HHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---hhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHH
Q 020914          150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---AKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQF  225 (320)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~  225 (320)
                      ......    ...+....+...+.+++..-+......   ..++...|+..+|+..+.+++..+|.....+. +|.++..
T Consensus       213 ~~~~~~----~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  288 (334)
T d1dcea1         213 ELVQNA----FFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP  288 (334)
T ss_dssp             HHHHHH----HHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHH----HHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence            111111    111111223333333332221111111   11667777888888888888888776654444 7777777


Q ss_pred             hhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccc
Q 020914          226 LRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRK  260 (320)
Q Consensus       226 ~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  260 (320)
                      ++++  |+++|++|+++     +|..+..|.+++.++
T Consensus       289 ~~~~~eA~~~~~~ai~l-----dP~~~~y~~~L~~~~  320 (334)
T d1dcea1         289 LLYEKETLQYFSTLKAV-----DPMRAAYLDDLRSKF  320 (334)
T ss_dssp             GGGHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH-----CcccHHHHHHHHHHH
Confidence            7777  88888888877     665566677666543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=4.7e-21  Score=151.36  Aligned_cols=107  Identities=31%  Similarity=0.449  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      ++..+...|+.++..|+|++|+..|++||+++|.++.+|.++|.||..+|++++|+.+|++|++++|+++.+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAEVS  112 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~~~  112 (320)
                      ..+|++++|+..|+++++++|++...+
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence            999999999999999999988765443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=8.4e-21  Score=155.82  Aligned_cols=211  Identities=14%  Similarity=0.033  Sum_probs=146.4

Q ss_pred             cCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 020914           20 AGNYLKAAALYTQAIKQD----PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL   95 (320)
Q Consensus        20 ~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~   95 (320)
                      .++.+.|+..+++++...    |..+.+++.+|.+|..+|++++|+..|+++|+++|+++.+|+++|.+|..+|++++|+
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence            345678888899988653    3446799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHH
Q 020914           96 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETA  175 (320)
Q Consensus        96 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  175 (320)
                      ..|+++++++|+++.++..+|.++...|++++|+....  ..+...+....    .....+......+..........  
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~--~al~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~--  163 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL--AFYQDDPNDPF----RSLWLYLAEQKLDEKQAKEVLKQ--  163 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCTTCHH----HHHHHHHHHHHHCHHHHHHHHHH--
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH--HHHhhccccHH----HHHHHHHHHHHhhhHHHHHHHHH--
Confidence            99999999999999999999999999999999987643  22322221111    11111111111111111111111  


Q ss_pred             HHhHhhccccChh---HHhhh------cChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhch
Q 020914          176 VKSWHETSKVDAK---VYFLL------DKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACL  240 (320)
Q Consensus       176 ~~~~~~~~~~~~~---~~~~l------g~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~  240 (320)
                        .........+.   +....      +....+...+.....+.|.....+. +|.++...|++  |+..|++|+..
T Consensus       164 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         164 --HFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             --HHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             --HhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence              11111111111   22222      3345555555555555555433343 79999999999  99999999987

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.5e-21  Score=160.63  Aligned_cols=122  Identities=11%  Similarity=0.101  Sum_probs=117.1

Q ss_pred             chHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAG-NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      +|.+..+|..+|.++...| ++++|+..++++++++|++..+|.++|.++..+|++++|+..++++++++|++..+|.++
T Consensus        73 nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~  152 (315)
T d2h6fa1          73 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR  152 (315)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHH
Confidence            6899999999999999987 599999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914           82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (320)
Q Consensus        82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  124 (320)
                      |.++..+|++++|+++|+++++++|.+..+|.++|.++...+.
T Consensus       153 ~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         153 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999999999999998766554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.8e-19  Score=137.23  Aligned_cols=123  Identities=22%  Similarity=0.331  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETTISL   70 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (320)
                      .+..+...|+.++..|+|++|+..|+++|...|..               ..++.++|.||.++|++++|+..++++|.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            46788899999999999999999999999987764               367889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        71 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      +|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.+...++.+....+.....
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998777666554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.83  E-value=2.9e-19  Score=134.68  Aligned_cols=120  Identities=18%  Similarity=0.245  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----------------PTLFSNRAAAFLHLVKLNKALADAETTI   68 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al   68 (320)
                      ..+..+...|+.++..|+|.+|+..|++|+...|..                ..++.++|.||..+|++++|+.+++++|
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            456778999999999999999999999999876543                2578899999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914           69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD  124 (320)
Q Consensus        69 ~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  124 (320)
                      +++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..+...++.+...+++
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998887665543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=6.7e-21  Score=162.67  Aligned_cols=249  Identities=10%  Similarity=-0.051  Sum_probs=189.2

Q ss_pred             HcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914           19 KAGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus        19 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      ..|+ .++|+.+++++|+.+|++..+|..++.++..++.          +++|+.+++++++.+|+++.+|+.+|.++..
T Consensus        40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence            3444 5899999999999999999999988888776654          7899999999999999999999999999998


Q ss_pred             ccC--HHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhH
Q 020914           88 MEQ--YDDALSAFQTALQYNPQSAEVS-RKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV  164 (320)
Q Consensus        88 ~~~--~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (320)
                      +++  +++|+..++++++++|.+..++ ..+|.++...+.+++|+...  ...+...+    .....+..+|.++...|.
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~--~~~i~~~p----~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT--DSLITRNF----SNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH--HTTTTTTC----CCHHHHHHHHHHHHHHSC
T ss_pred             hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHH--HHHHHcCC----CCHHHHHHHHHHHHHhcC
Confidence            876  8999999999999999999886 46778888889999997664  23332222    222233333444443333


Q ss_pred             HHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchh
Q 020914          165 FSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLV  241 (320)
Q Consensus       165 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~  241 (320)
                      +..+...+.+++...+...... ..+..++...++...|.+++..+|.....+. .|.++...+++  |+..|.+++.. 
T Consensus       194 ~~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-  271 (334)
T d1dcea1         194 QPDSGPQGRLPENVLLKELELV-QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE-  271 (334)
T ss_dssp             CCCSSSCCSSCHHHHHHHHHHH-HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHhHHhHHHHHHHH-HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh-
Confidence            3333333322222222211111 1445678888999999999999988766655 89899999998  99999999988 


Q ss_pred             CCCCCCChhHhhhcccccccccCcccchhhhccccccc
Q 020914          242 APKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLR  279 (320)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  279 (320)
                          +|....+|..+|.++..+|+++++..-+...+..
T Consensus       272 ----~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         272 ----NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             ----CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             ----CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                8889999999999999999999998777765443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.81  E-value=8.1e-19  Score=134.45  Aligned_cols=124  Identities=26%  Similarity=0.431  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETTIS   69 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   69 (320)
                      ..+..+...|+.++..|+|.+|+..|.+|+...|..               ..++.++|.||..+|++++|+.+++++++
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            457889999999999999999999999999764432               36688999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           70 LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        70 l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      ++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+...++.+....+...+.
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~  151 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER  151 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999988777666543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-18  Score=136.45  Aligned_cols=123  Identities=20%  Similarity=0.242  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      ++..++++|..++..|+|++|++.|.+   +.|.++.+|+++|.+|..+|++++|+.+|++||+++|+++.+|+++|.++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            456777899999999999999999986   46678999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHHHHHHHHHHH
Q 020914           86 EAMEQYDDALSAFQTALQYNPQS----------------AEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      ..+|++++|+..|++++...|.+                .+++.++|.++...|++++|++.
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~  142 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ  142 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999986654                35677788888888888887654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=7.8e-19  Score=134.71  Aligned_cols=123  Identities=24%  Similarity=0.391  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ----------------DPSNPTLFSNRAAAFLHLVKLNKALADAETTIS   69 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   69 (320)
                      .+..+...|..++..|+|++|+..|+++|+.                +|..+.++.++|.+|.++|+|++|+..|+++|+
T Consensus        26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            3556788999999999999999999999864                455678899999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           70 LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        70 l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      ++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..+...++.+........++
T Consensus       106 ~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         106 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988777666655

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.6e-18  Score=125.35  Aligned_cols=112  Identities=26%  Similarity=0.380  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-------HH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-------KG   77 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-------~~   77 (320)
                      ..+..+.++|+.++..|+|++|+.+|+++|+++|+++.++.++|.+|..+|+|++|+.+++++|+++|+++       .+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999998764       47


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 020914           78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR  117 (320)
Q Consensus        78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  117 (320)
                      |..+|.++..++++++|+++|++++..+|+ ++....+..
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  120 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQ  120 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence            778888999999999999999999999875 555544443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=4.1e-18  Score=144.89  Aligned_cols=272  Identities=9%  Similarity=-0.026  Sum_probs=209.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----   74 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----   74 (320)
                      +.+++....+|.+++..|++++|+..|+++++..|.+     ..++..+|.++..+|++++|+..|++++++.|..    
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence            4567888889999999999999999999999999986     4588999999999999999999999999876532    


Q ss_pred             --HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH
Q 020914           75 --EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL  144 (320)
Q Consensus        75 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  144 (320)
                        ..++..+|.++...|++..|...+.+++.+.+.        ...++..+|.++...|+++.+......  ........
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~--~~~~~~~~  166 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS--GIEVLSSY  166 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH--HHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHH--HHHHhhhh
Confidence              467889999999999999999999999986432        234677889999999999998766432  11111110


Q ss_pred             -HHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCc
Q 020914          145 -DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (320)
Q Consensus       145 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~  213 (320)
                       ...........+..+...+....+...+.++...+.......+.          ++...|+.++|...+++++.+.+..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  246 (366)
T d1hz4a_         167 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN  246 (366)
T ss_dssp             CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT
T ss_pred             hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc
Confidence             11122233444555666777778888888888777765544433          6778899999999999999987654


Q ss_pred             CCcc-----chhhHHHHhhHH--HHHHHHHHhchhCC-CCCCChhHhhhcccccccccCcccchhhhccccc
Q 020914          214 ESPH-----THGSCFQFLRQY--ADDSFSSAACLVAP-KSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPL  277 (320)
Q Consensus       214 ~~~~-----~~g~~~~~~~~~--A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  277 (320)
                      ....     .+|.++...+++  |+..+++++..... ...|....+|..+|.++..+|+++++...++++.
T Consensus       247 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         247 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3221     157778888888  99999999865432 2345668899999999999999999987776643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.8e-18  Score=124.52  Aligned_cols=113  Identities=14%  Similarity=0.121  Sum_probs=102.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Q 020914           11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL---VKLNKALADAETTISLNPQW--EKGYFRKGCIL   85 (320)
Q Consensus        11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~--~~~~~~lg~~~   85 (320)
                      -.+++.+...+++++|++.|++++.++|.++.+++++|.++...   +++++|+..|++++..+|++  ..+++++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999874   45668999999999999865  45999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914           86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (320)
Q Consensus        86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  123 (320)
                      ..+|++++|+++|+++|+++|++..+...++.+....+
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999988887765543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.77  E-value=3.3e-18  Score=121.66  Aligned_cols=95  Identities=14%  Similarity=0.098  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA   87 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   87 (320)
                      ..++.+|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.+|+.+|.+|..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHH
Q 020914           88 MEQYDDALSAFQTAL  102 (320)
Q Consensus        88 ~~~~~~A~~~~~~al  102 (320)
                      +|++++|++++++.|
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999876

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=7.2e-18  Score=125.57  Aligned_cols=114  Identities=15%  Similarity=0.241  Sum_probs=101.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914           15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL----------VKLNKALADAETTISLNPQWEKGYFRKGCI   84 (320)
Q Consensus        15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   84 (320)
                      ..+-+.+.|++|+..|+++++++|+++.+++++|.++..+          +.+++|+..|++|++++|+++.+|+++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3456677899999999999999999999999999999865          455899999999999999999999999999


Q ss_pred             HHHccC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           85 LEAMEQ-----------YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        85 ~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      |..+|+           |++|+++|+++++++|++..++..++.+....+.+.++
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            988764           79999999999999999999999999887666666655

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-16  Score=124.57  Aligned_cols=105  Identities=12%  Similarity=0.144  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------
Q 020914            4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---------   74 (320)
Q Consensus         4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------   74 (320)
                      |.++..|+++|.+++..|++++|+.+|++||+++|+++.+|+++|.++..+|++++|+..|++++...|.+         
T Consensus        33 ~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~  112 (192)
T d1hh8a_          33 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG  112 (192)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGT
T ss_pred             CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhh
Confidence            44678899999999999999999999999999999999999999999999999999999999999876543         


Q ss_pred             -------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914           75 -------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS  108 (320)
Q Consensus        75 -------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  108 (320)
                             ..+++++|.++..+|++++|++.|++++.+.|+.
T Consensus       113 ~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         113 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                   4789999999999999999999999999999975

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.67  E-value=8.6e-16  Score=108.91  Aligned_cols=91  Identities=16%  Similarity=0.134  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  121 (320)
                      ..++.+|.++...|++++|+..|++++..+|+++.+|..+|.++..+|++++|+.+|+++++++|+++.+|..+|.++..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020914          122 AKDKKRAQEVE  132 (320)
Q Consensus       122 ~~~~~~A~~~~  132 (320)
                      .|++++|++..
T Consensus        97 ~g~~~~A~~~l  107 (112)
T d1hxia_          97 EHNANAALASL  107 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99999997764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=4e-16  Score=129.99  Aligned_cols=128  Identities=14%  Similarity=0.117  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQD------PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----   74 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----   74 (320)
                      ..++.+...|++|...|+|++|+++|.+|+++.      +..+.++.++|.||..+|++++|+.+|++++.+.+..    
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~  114 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR  114 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch
Confidence            346778899999999999999999999999873      2235789999999999999999999999999886654    


Q ss_pred             --HHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           75 --EKGYFRKGCILEA-MEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVE  132 (320)
Q Consensus        75 --~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~  132 (320)
                        ..++..+|.+|.. .|++++|++.|++++++.+..      ..++..+|.++...|++++|+..+
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~  181 (290)
T d1qqea_         115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY  181 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHH
Confidence              5678888988865 699999999999998874432      445777888888888888887664

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.3e-15  Score=126.95  Aligned_cols=172  Identities=9%  Similarity=0.014  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHH
Q 020914           44 FSNRAAAFLHLVKLNKALADAETTISLN------PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEV  111 (320)
Q Consensus        44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~  111 (320)
                      |...|.+|..+|+|++|+.+|.+|+.+.      ++...+|.++|.+|..+|++++|+++|++++++.+..      ..+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            3345899999999999999999999984      2345789999999999999999999999999986655      567


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh--
Q 020914          112 SRKIKRVSQL-AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK--  188 (320)
Q Consensus       112 ~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--  188 (320)
                      +..+|.++.. .|++++|++.+.....+............++..+|.++...|.+..|...+++++............  
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            8888887755 5899999877543222222222233345566677888888888888888888877766554332221  


Q ss_pred             --------HHhhhcChhHHHHhhhhhhccccCcCC
Q 020914          189 --------VYFLLDKEKTDTEKYAPIVNVDKAFES  215 (320)
Q Consensus       189 --------~~~~lg~~~~A~~~~~~a~~~~~~~~~  215 (320)
                              ++...|+...|...++++.+++|.+..
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~  234 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc
Confidence                    556678888888888888888876543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.2e-16  Score=109.94  Aligned_cols=91  Identities=12%  Similarity=0.139  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914           42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL  121 (320)
Q Consensus        42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  121 (320)
                      .-+...|..+...|++++|+..|+++|+++|+++.+|..+|.+|..+|++++|+..|+++++++|+++.+|..+|.++..
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020914          122 AKDKKRAQEVE  132 (320)
Q Consensus       122 ~~~~~~A~~~~  132 (320)
                      +|++++|+..+
T Consensus        84 ~~~~~~A~~~~   94 (117)
T d1elwa_          84 LNRFEEAKRTY   94 (117)
T ss_dssp             TTCHHHHHHHH
T ss_pred             ccCHHHHHHHH
Confidence            99999997764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.9e-15  Score=112.47  Aligned_cols=92  Identities=14%  Similarity=0.076  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  120 (320)
                      +..+...|..|+..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..+|..+|.++.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            35577889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020914          121 LAKDKKRAQEVE  132 (320)
Q Consensus       121 ~~~~~~~A~~~~  132 (320)
                      .+|++++|+...
T Consensus        90 ~~g~~~eA~~~~  101 (159)
T d1a17a_          90 ALGKFRAALRDY  101 (159)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHH
Confidence            999999997764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.7e-15  Score=118.75  Aligned_cols=93  Identities=17%  Similarity=0.099  Sum_probs=89.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS  119 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  119 (320)
                      ++..+...|..++..|+|++|+..|+++|.++|+++.+|.++|.+|..+|++++|+.+|++|++++|+++.+|..+|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020914          120 QLAKDKKRAQEVE  132 (320)
Q Consensus       120 ~~~~~~~~A~~~~  132 (320)
                      ..+|++++|+..+
T Consensus        83 ~~l~~~~~A~~~~   95 (201)
T d2c2la1          83 LEMESYDEAIANL   95 (201)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHCCCHHHHHHHH
Confidence            9999999997764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9e-16  Score=111.58  Aligned_cols=86  Identities=10%  Similarity=0.081  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ  120 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  120 (320)
                      +..+.++|..++..|+|++|+.+|+++|+++|+++.++.++|.+|..+|+|++|+..|+++++++|.+..++..++.++.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999998876666666555


Q ss_pred             HHHHHH
Q 020914          121 LAKDKK  126 (320)
Q Consensus       121 ~~~~~~  126 (320)
                      .+|...
T Consensus        84 ~lg~~~   89 (128)
T d1elra_          84 RIGNSY   89 (128)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.60  E-value=1.9e-15  Score=113.82  Aligned_cols=103  Identities=17%  Similarity=0.255  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-   73 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-   73 (320)
                      +...+..|..++..|+|++|+..|++||++.|+.            +.+|.++|.+|..+|++++|+..+++++++.|. 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            3344455889999999999999999999988764            468999999999999999999999999987542 


Q ss_pred             ----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914           74 ----------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA  109 (320)
Q Consensus        74 ----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  109 (320)
                                ...+++++|.+|..+|++++|+++|++++++.|+..
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence                      245789999999999999999999999999976543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=5.6e-15  Score=109.63  Aligned_cols=122  Identities=16%  Similarity=0.149  Sum_probs=91.7

Q ss_pred             HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914           49 AAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM----------EQYDDALSAFQTALQYNPQSAEVSRKIKRV  118 (320)
Q Consensus        49 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  118 (320)
                      ..|.+++.+++|+..|+++++++|+++.+++++|.++..+          +.+++|+..|+++++++|+++.+|.++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3467788999999999999999999999999999999854          556899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcC
Q 020914          119 SQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDK  195 (320)
Q Consensus       119 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~  195 (320)
                      +...|+...                                    ....+.+.+++|+..|.+++.++|.   +...++.
T Consensus        85 y~~~g~~~~------------------------------------~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~  128 (145)
T d1zu2a1          85 YTSFAFLTP------------------------------------DETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  128 (145)
T ss_dssp             HHHHHHHCC------------------------------------CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHcccchh------------------------------------hHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHH
Confidence            877664321                                    1122344555666666666666665   4445555


Q ss_pred             hhHHHHhhhhh
Q 020914          196 EKTDTEKYAPI  206 (320)
Q Consensus       196 ~~~A~~~~~~a  206 (320)
                      ..+|.+.+..+
T Consensus       129 ~~ka~~~~~e~  139 (145)
T d1zu2a1         129 TAKAPQLHAEA  139 (145)
T ss_dssp             HHTHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555554443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.3e-14  Score=99.28  Aligned_cols=81  Identities=15%  Similarity=0.158  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF   79 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   79 (320)
                      ++.++.+|.+++..|+|++|+..|++|+++.|.+       +.++.++|.++.++|++++|+..|+++|+++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4556677777777777777777777777654432       456666666666666666666666666666666666666


Q ss_pred             HHHHHHHH
Q 020914           80 RKGCILEA   87 (320)
Q Consensus        80 ~lg~~~~~   87 (320)
                      +++.+...
T Consensus        85 Nl~~~~~~   92 (95)
T d1tjca_          85 NLKYFEYI   92 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66554433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=5.2e-14  Score=119.02  Aligned_cols=232  Identities=12%  Similarity=0.019  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-----   73 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----   73 (320)
                      ..+.++..+|.++...|++++|+..|++++++.|..      ..++..+|.++...|++..|+..+.+++.+.+.     
T Consensus        49 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~  128 (366)
T d1hz4a_          49 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ  128 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccch
Confidence            346789999999999999999999999999875432      467899999999999999999999999876431     


Q ss_pred             ---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHhH
Q 020914           74 ---WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-----AEVSRKIKRVSQLAKDKKRAQEVENIRSNV-DMVQHL  144 (320)
Q Consensus        74 ---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~  144 (320)
                         ...++..+|.++...|+++.|...+.+++...+..     ..++...+.++...+.+..+.......... ......
T Consensus       129 ~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~  208 (366)
T d1hz4a_         129 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH  208 (366)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred             hhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc
Confidence               24577889999999999999999999999987754     346667777777777777776543211111 001111


Q ss_pred             HHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh--------------HHhhhcChhHHHHhhhhhhccc
Q 020914          145 DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK--------------VYFLLDKEKTDTEKYAPIVNVD  210 (320)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--------------~~~~lg~~~~A~~~~~~a~~~~  210 (320)
                      ......+....+..+...+.       +++|...+.++..+.+.              ++..+|++++|+..+++++.+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  281 (366)
T d1hz4a_         209 SDWISNANKVRVIYWQMTGD-------KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA  281 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhccc-------HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            12222233333444444444       44444444444443332              7888999999999999998653


Q ss_pred             cCc------CCcc-chhhHHHHhhHH--HHHHHHHHhchhCC
Q 020914          211 KAF------ESPH-THGSCFQFLRQY--ADDSFSSAACLVAP  243 (320)
Q Consensus       211 ~~~------~~~~-~~g~~~~~~~~~--A~~~~~~al~~~~~  243 (320)
                      ...      ...+ .+|.++...|++  |++.|++|+.+.++
T Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         282 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            322      2222 278888899998  99999999988543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.52  E-value=7.7e-14  Score=106.31  Aligned_cols=93  Identities=18%  Similarity=0.180  Sum_probs=87.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|..+..+.++|.++...|+|++|+..|++||+++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++..++..++
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            47788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHH
Q 020914           83 CILEAMEQYDDAL   95 (320)
Q Consensus        83 ~~~~~~~~~~~A~   95 (320)
                      .+...+....++.
T Consensus       153 ~~~~~l~~~~~~~  165 (169)
T d1ihga1         153 KVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9998877776654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.4e-14  Score=95.83  Aligned_cols=83  Identities=8%  Similarity=-0.048  Sum_probs=75.2

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS  112 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  112 (320)
                      +++-++.+|.++...|+|++|+..|++|+++.|.+       +.++.++|.++..+|++++|+.+|+++|+++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            35678999999999999999999999999986543       67899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 020914          113 RKIKRVSQLA  122 (320)
Q Consensus       113 ~~l~~~~~~~  122 (320)
                      .+++.+...+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998776544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-15  Score=135.61  Aligned_cols=225  Identities=7%  Similarity=-0.033  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914           25 KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY  104 (320)
Q Consensus        25 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  104 (320)
                      +|+++|++|+++.|+.+.++.++|.++..+|++++|   |+++|.++|+.+.++...+.+.  ...|..+++.+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            789999999999999999999999999999999887   8999999998777654433332  23467788888888865


Q ss_pred             CC--CCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhh
Q 020914          105 NP--QSAEV-SRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE  181 (320)
Q Consensus       105 ~p--~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~  181 (320)
                      ..  +.... ...++.+....+.++.++...  .....    +.+........+|..+...+....+...+.+++.....
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l--~~~~~----l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  152 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQEL--CTVFN----VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ  152 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHH--TC-----------------------------------CCHHHHHHHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHC----CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH
Confidence            43  32222 233455666677777775442  22222    22233334455666666666665555555554432221


Q ss_pred             c-cccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhccc
Q 020914          182 T-SKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQG  257 (320)
Q Consensus       182 ~-~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~  257 (320)
                      . ......++...|++++|+.+|++|++++|.....+. +|.++...+++  |+.+|.||+..     +|.++.++.|++
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~-----~~~~~~a~~nL~  227 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-----KFPFPAASTNLQ  227 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-----SBCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCHHHHHHHH
Confidence            1 111112788889999999999999999999876665 99999999998  99999999998     778899999999


Q ss_pred             ccccccCc
Q 020914          258 LRKWRHSQ  265 (320)
Q Consensus       258 ~~~~~l~~  265 (320)
                      ..+.+..+
T Consensus       228 ~~~~~~~~  235 (497)
T d1ya0a1         228 KALSKALE  235 (497)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhhh
Confidence            77655443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.45  E-value=1e-12  Score=99.75  Aligned_cols=98  Identities=16%  Similarity=0.195  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      .+..+.++|.+++..|++++|+..+++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++..++.+.
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHH-HHHHHHHHHh
Q 020914           86 EAMEQYDD-ALSAFQTALQ  103 (320)
Q Consensus        86 ~~~~~~~~-A~~~~~~al~  103 (320)
                      ..++++.+ ..+.|.+..+
T Consensus       143 ~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHh
Confidence            88877654 3444444433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.1e-12  Score=99.92  Aligned_cols=90  Identities=17%  Similarity=0.113  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      ....+.++|.+++..|+|++|+..++++|.++|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.+...++.+.
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHccCHHHHH
Q 020914           86 EAMEQYDDAL   95 (320)
Q Consensus        86 ~~~~~~~~A~   95 (320)
                      ..+++..+..
T Consensus       141 ~~~~~~~~~e  150 (170)
T d1p5qa1         141 QRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8877776554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.42  E-value=6e-13  Score=99.45  Aligned_cols=85  Identities=18%  Similarity=0.089  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL   85 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   85 (320)
                      ....+.++|.+++..|++++|+..++++|+++|.++.+|+.+|.+|..+|++++|+.+|+++++++|++..+...++.+.
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHccC
Q 020914           86 EAMEQ   90 (320)
Q Consensus        86 ~~~~~   90 (320)
                      .++++
T Consensus       146 ~kl~~  150 (153)
T d2fbna1         146 NKLKE  150 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=3.3e-12  Score=106.79  Aligned_cols=195  Identities=13%  Similarity=-0.062  Sum_probs=129.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccC
Q 020914           13 KGNEFFKAGNYLKAAALYTQAIKQ-DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-KGYFRKGCILEAMEQ   90 (320)
Q Consensus        13 ~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~lg~~~~~~~~   90 (320)
                      .|......+..++|...|++|++. .|.+...|...+..+..+|++++|...|++++...|.+. .+|...+......|+
T Consensus        70 ~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~  149 (308)
T d2onda1          70 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG  149 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC
Confidence            344445556667778888888764 677777777788888888888888888888888777653 467777777777888


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHH
Q 020914           91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQL-AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVV  169 (320)
Q Consensus        91 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  169 (320)
                      ++.|++.|+++++..|.+...+...+..... .|+.+.|..+.+      ......+..+.+...+++.....|.+..+.
T Consensus       150 ~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e------~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR  223 (308)
T d2onda1         150 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE------LGLKKYGDIPEYVLAYIDYLSHLNEDNNTR  223 (308)
T ss_dssp             HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHH------HHHHhhhhhHHHHHHHHHHHHHcCChHHHH
Confidence            8888888888888888777777777765433 356666654432      222223344555666677777777777777


Q ss_pred             HHHHHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhccccCc
Q 020914          170 ETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVDKAF  213 (320)
Q Consensus       170 ~~~~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~~~~~~  213 (320)
                      ..|++|+...+....-...       .-...|+...+.+.++++.++-|..
T Consensus       224 ~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            7888777755432221111       2234577788888777777776654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=9.5e-12  Score=103.91  Aligned_cols=186  Identities=10%  Similarity=-0.002  Sum_probs=115.9

Q ss_pred             HccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHHHH
Q 020914           53 HLVKLNKALADAETTISL-NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA-EVSRKIKRVSQLAKDKKRAQE  130 (320)
Q Consensus        53 ~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~  130 (320)
                      ..+..++|...|++|++. .|.+...|...+.++...|++++|...|+++++..|.+. .+|..++.+....+..+.|.+
T Consensus        76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~  155 (308)
T d2onda1          76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM  155 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence            344567888888888864 677888888888888888888888888888888888664 467888888888888888866


Q ss_pred             HHHHhhhhHHHHhHHHHHHHHhhhhcchh-hhhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhh
Q 020914          131 VENIRSNVDMVQHLDEFKSEMSEKYGAEE-CWKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPI  206 (320)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a  206 (320)
                      ++..  .+...    +....++...+... ...+....+...++.++..++....+.-.   .....|+.++|...|+++
T Consensus       156 i~~~--al~~~----~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a  229 (308)
T d2onda1         156 IFKK--AREDA----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHH--HHTST----TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHH--HHHhC----CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            6432  11111    11122222223222 22355666777777777776665433333   555778888888888888


Q ss_pred             hccccCcCCc----cc-hhhHHHHhhHH--HHHHHHHHhchhCCC
Q 020914          207 VNVDKAFESP----HT-HGSCFQFLRQY--ADDSFSSAACLVAPK  244 (320)
Q Consensus       207 ~~~~~~~~~~----~~-~g~~~~~~~~~--A~~~~~~al~~~~~~  244 (320)
                      +...|.....    |. ...+-...|..  +.+.++++.++.|..
T Consensus       230 i~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         230 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            8765533211    11 11111223333  677778787775433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.3e-13  Score=120.46  Aligned_cols=119  Identities=7%  Similarity=-0.087  Sum_probs=86.3

Q ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      .|.++.++..+|..+...|++++|+..+.+++..+|  ..++.++|.++..+|++++|+.+|++|++++|+++.+|+++|
T Consensus       116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg  193 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLA  193 (497)
T ss_dssp             ---------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHH
T ss_pred             ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            366778889999999999999999999999998876  478999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914           83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (320)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  123 (320)
                      .++...|++.+|+.+|.+++.++|.++.++.+|+.++....
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999998876543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.8e-13  Score=94.84  Aligned_cols=87  Identities=14%  Similarity=0.087  Sum_probs=77.6

Q ss_pred             chHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q 020914            3 AEAEEMSLKDKGNEFFKAG---NYLKAAALYTQAIKQDPSN--PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG   77 (320)
Q Consensus         3 ~p~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   77 (320)
                      +|.++.++++.|.++...+   ++++|+..|++++..+|..  +.+++++|.+|..+|++++|+.+|+++|+++|++..+
T Consensus        29 ~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          29 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence            5788999999999998754   5667999999999998765  4689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcc
Q 020914           78 YFRKGCILEAME   89 (320)
Q Consensus        78 ~~~lg~~~~~~~   89 (320)
                      ...++.+...++
T Consensus       109 ~~l~~~I~~~~~  120 (122)
T d1nzna_         109 KELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999988876543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.34  E-value=1.8e-11  Score=93.47  Aligned_cols=99  Identities=16%  Similarity=0.125  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHccCHHHHHH
Q 020914            5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----------------------PTLFSNRAAAFLHLVKLNKALA   62 (320)
Q Consensus         5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~   62 (320)
                      ...+++...|......|++++|+..|.+|+.+.+..                      ..++..+|.++..+|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            456789999999999999999999999999987643                      2678999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914           63 DAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ  103 (320)
Q Consensus        63 ~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  103 (320)
                      .+++++.++|.+..+|..++.++..+|++.+|+..|+++.+
T Consensus        89 ~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          89 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999833

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.19  E-value=3.6e-11  Score=89.85  Aligned_cols=90  Identities=13%  Similarity=0.066  Sum_probs=71.2

Q ss_pred             HHHHH--HHHHHHHccCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914           42 TLFSN--RAAAFLHLVKLNKALADAETTISLNPQW------------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ  107 (320)
Q Consensus        42 ~~~~~--lg~~~~~~g~~~~A~~~~~~al~l~p~~------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  107 (320)
                      .++..  .|..++..|+|++|+..|+++|+++|+.            ..+|.++|.+|..+|++++|++.+++++++.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            44444  4888999999999999999999998864            357999999999999999999999999987542


Q ss_pred             C-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 020914          108 S-----------AEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus       108 ~-----------~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      .           ..++.++|.++..+|++++|++.
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~  122 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE  122 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHH
Confidence            1           23556666666666666666544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.18  E-value=4.4e-10  Score=91.28  Aligned_cols=214  Identities=16%  Similarity=0.146  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914            6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGYFRK   81 (320)
Q Consensus         6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l   81 (320)
                      +|.+++.+|..++..+++++|+++|++|.+.  .++.+++.+|.+|..    ..++..|...++.+....  ++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence            4779999999999999999999999999876  478999999999998    679999999999987654  78889999


Q ss_pred             HHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHhHHHHHHHHhh
Q 020914           82 GCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA----KDKKRAQEVENIRSNVDMVQHLDEFKSEMSE  153 (320)
Q Consensus        82 g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  153 (320)
                      |.++..    ..+.+.|...|+++.+..+  ..+...++..+...    .....+......  ...      ........
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~--~~~------~~~~~~~~  146 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTK--ACD------LNDGDGCT  146 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHH--HHH------TTCHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhh--hhc------ccccchhh
Confidence            998875    5788999999999988654  45555565554321    112223222110  000      00111112


Q ss_pred             hhcchhhh----hhHHHHHHHHHHHHHHhHhhccccChh-------HHhh----hcChhHHHHhhhhhhccccCcCCccc
Q 020914          154 KYGAEECW----KHVFSFVVETMETAVKSWHETSKVDAK-------VYFL----LDKEKTDTEKYAPIVNVDKAFESPHT  218 (320)
Q Consensus       154 ~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~-------~~~~----lg~~~~A~~~~~~a~~~~~~~~~~~~  218 (320)
                      .++..+..    ......+...+..+.+.-      ++.       +|..    ..++++|+.+|+++.+.+... ....
T Consensus       147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g------~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~-a~~~  219 (265)
T d1ouva_         147 ILGSLYDAGRGTPKDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGG-GCFN  219 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHH-HHHH
T ss_pred             hhhhhhccCCCcccccccchhhhhcccccc------ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHH-HHHH
Confidence            22222221    122233333333333210      112       2222    356888888888888875432 1233


Q ss_pred             hhhHHHH----hhHH--HHHHHHHHhch
Q 020914          219 HGSCFQF----LRQY--ADDSFSSAACL  240 (320)
Q Consensus       219 ~g~~~~~----~~~~--A~~~~~~al~~  240 (320)
                      +|.+|..    .+.+  |+++|++|+..
T Consensus       220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         220 LGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence            7777663    1234  88888888866

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.17  E-value=1.5e-11  Score=99.82  Aligned_cols=118  Identities=19%  Similarity=0.168  Sum_probs=91.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914           14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD   93 (320)
Q Consensus        14 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~   93 (320)
                      +...+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            45567788899999999999999999999999999999999999999999999999999888888888888887777777


Q ss_pred             HHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           94 ALSAFQTALQY-NPQSAEVSRKIKRVSQLAKDKKRAQEV  131 (320)
Q Consensus        94 A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~  131 (320)
                      +...+.+.... .|.....+...+.+....|+.++|.+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~  121 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL  121 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            66555443333 444455556666667777777777554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.94  E-value=2.1e-09  Score=86.97  Aligned_cols=80  Identities=14%  Similarity=0.075  Sum_probs=73.6

Q ss_pred             HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914           49 AAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA  128 (320)
Q Consensus        49 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A  128 (320)
                      .-....|++++|+..++++++.+|+++.++..+|.+|...|++++|+..|+++++++|++..++..++.+....+...++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999888777766665

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.93  E-value=5.8e-09  Score=79.22  Aligned_cols=93  Identities=6%  Similarity=-0.094  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----------------------HHHHHHHHHHHHccCHHHHHHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE----------------------KGYFRKGCILEAMEQYDDALSAF   98 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----------------------~~~~~lg~~~~~~~~~~~A~~~~   98 (320)
                      ...+...|......|++++|+..|.+|+.+.|+..                      .++..+|.++..+|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            57889999999999999999999999999977542                      57899999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           99 QTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        99 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                      +++++++|.+..+|..++.++...|+..+|+..+.
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~  125 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR  125 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999999999999999999987653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=1.3e-08  Score=70.85  Aligned_cols=81  Identities=9%  Similarity=-0.055  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           40 NPTLFSNRAAAFLHLV---KLNKALADAETTISLNPQWE-KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      .+.+.++.|+++.+..   +.++|+..++.+++.+|... ++++.+|..|.++|+|++|..+++++|+++|++..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            4789999999999764   45799999999999999764 8999999999999999999999999999999999998766


Q ss_pred             HHHHH
Q 020914          116 KRVSQ  120 (320)
Q Consensus       116 ~~~~~  120 (320)
                      ..+..
T Consensus       114 ~~Ie~  118 (124)
T d2pqrb1         114 SMVED  118 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.74  E-value=9.3e-08  Score=77.11  Aligned_cols=207  Identities=13%  Similarity=0.122  Sum_probs=122.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914           40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKI  115 (320)
Q Consensus        40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l  115 (320)
                      +|.+++++|..+...+++++|+.+|+++.+.  +++.+++.+|.+|..    ..++..|...++++...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            5789999999999999999999999999765  689999999999998    77999999999998764  477888888


Q ss_pred             HHHHHH----HHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhh-ccccChhHH
Q 020914          116 KRVSQL----AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE-TSKVDAKVY  190 (320)
Q Consensus       116 ~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~~~  190 (320)
                      |.+...    ....+.|.....  .........  ....+...+............+...+.+....-.. .......++
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~--~a~~~g~~~--a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~  152 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYS--KACDLKYAE--GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLY  152 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHH--HHHHTTCHH--HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHh--hhhhhhhhh--HHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhh
Confidence            877653    234455544322  111110000  00000000000000111222233333322211000 000000022


Q ss_pred             h----hhcChhHHHHhhhhhhccccCcCCccchhhHHHH----hhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccc
Q 020914          191 F----LLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQF----LRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRK  260 (320)
Q Consensus       191 ~----~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~----~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  260 (320)
                      .    ...+...+...++.+.+.+.. .....+|.++..    .+.+  |+.+|++|.+.       .++.+++++|..+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~a~~~g~~-~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-------g~~~a~~~LG~~y  224 (265)
T d1ouva_         153 DAGRGTPKDLKKALASYDKACDLKDS-PGCFNAGNMYHHGEGATKNFKEALARYSKACEL-------ENGGGCFNLGAMQ  224 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHH
T ss_pred             ccCCCcccccccchhhhhcccccccc-ccccchhhhcccCcccccchhhhhhhHhhhhcc-------cCHHHHHHHHHHH
Confidence            2    234556677777777665321 112237777664    3345  99999999965       3488899999887


Q ss_pred             cc
Q 020914          261 WR  262 (320)
Q Consensus       261 ~~  262 (320)
                      ..
T Consensus       225 ~~  226 (265)
T d1ouva_         225 YN  226 (265)
T ss_dssp             HT
T ss_pred             Hc
Confidence            64

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=2.8e-08  Score=69.03  Aligned_cols=81  Identities=11%  Similarity=-0.034  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAG---NYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG   82 (320)
Q Consensus         7 a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   82 (320)
                      +++.|+.|.++....   +.++|+.+++.++..+|.+. +.++++|..|.++|+|++|..+++++|+++|++..+...+-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            578888899998764   56799999999999999775 89999999999999999999999999999999999987766


Q ss_pred             HHHHH
Q 020914           83 CILEA   87 (320)
Q Consensus        83 ~~~~~   87 (320)
                      .+-..
T Consensus       115 ~Ie~~  119 (124)
T d2pqrb1         115 MVEDK  119 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.24  E-value=7.2e-06  Score=58.39  Aligned_cols=103  Identities=14%  Similarity=0.066  Sum_probs=81.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHH
Q 020914           21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA----MEQYDDALS   96 (320)
Q Consensus        21 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~~~~~~A~~   96 (320)
                      .++++|+.+|+++.+.+  ++.+.+.+|.  ....++++|+..++++.+.  +++.+.+.+|.+|..    ..++++|++
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            47889999999999875  5667777775  3467899999999998765  689999999999986    567899999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHHHHH
Q 020914           97 AFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEV  131 (320)
Q Consensus        97 ~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~  131 (320)
                      .|+++.+.  .++.+...||.++..    ..+..+|..+
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~  117 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKT  117 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHH
Confidence            99999875  578888899988764    2345556544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.00  E-value=7.9e-05  Score=52.70  Aligned_cols=84  Identities=15%  Similarity=0.071  Sum_probs=73.2

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccC
Q 020914           19 KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGYFRKGCILEA----MEQ   90 (320)
Q Consensus        19 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~~~   90 (320)
                      ...++++|+..|+++.+.  .++.+.+.+|.+|..    ..++++|+..|+++.+.  .++.+.+.+|.+|..    ..+
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCC
Confidence            456899999999999875  479999999999986    56799999999999875  579999999999987    568


Q ss_pred             HHHHHHHHHHHHhhCC
Q 020914           91 YDDALSAFQTALQYNP  106 (320)
Q Consensus        91 ~~~A~~~~~~al~~~p  106 (320)
                      +++|+..|++|.+...
T Consensus       111 ~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         111 EKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            9999999999988653

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.67  E-value=0.49  Score=28.75  Aligned_cols=27  Identities=19%  Similarity=0.312  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQA   33 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~a   33 (320)
                      |-.+-.++.-+...|+|++||+|+++|
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA   34 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKA   34 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334555666666777777777766554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.43  E-value=4.3  Score=33.54  Aligned_cols=84  Identities=10%  Similarity=-0.081  Sum_probs=42.7

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 020914           19 KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAF   98 (320)
Q Consensus        19 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~   98 (320)
                      ..+..+.|............+.......++. ....+++..+...++..-.-....+...|-+|..+..+|+.++|...|
T Consensus       264 ~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~  342 (450)
T d1qsaa1         264 GNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEIL  342 (450)
T ss_dssp             STTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCchHHHHHHHHhhcccccchHHHHHHHHH-HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHH
Confidence            3445555555555554443333333333333 334456666665555432222233555566666666666666666666


Q ss_pred             HHHHh
Q 020914           99 QTALQ  103 (320)
Q Consensus        99 ~~al~  103 (320)
                      ..+..
T Consensus       343 ~~~a~  347 (450)
T d1qsaa1         343 HQLMQ  347 (450)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            66543

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.95  E-value=1.1  Score=27.07  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHH
Q 020914           78 YFRKGCILEAMEQYDDALSAFQTALQY------NPQSAEVSRK  114 (320)
Q Consensus        78 ~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~  114 (320)
                      +-.+|.-+...|+|++||+++++|...      -|.+..+...
T Consensus        11 ~~RrAer~l~~~rydeAIech~kA~~yl~eA~klt~s~~~l~S   53 (83)
T d2crba1          11 QSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLS   53 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            344555566666666666665555432      2555555543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=87.63  E-value=1.3  Score=36.82  Aligned_cols=125  Identities=6%  Similarity=-0.131  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH----HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914            8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAA----FLHLVKLNKALADAETTISLNPQWEKGYFRKGC   83 (320)
Q Consensus         8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~----~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   83 (320)
                      ..+...|.......+.+.|...+.......+-....+......    ....+..+.|...+........+........+.
T Consensus       215 ~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~  294 (450)
T d1qsaa1         215 RQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM  294 (450)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH
Confidence            3455566666777899999999998877665554443333333    334466788888887777665555555555554


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914           84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN  133 (320)
Q Consensus        84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  133 (320)
                       ....+++..+...+...-.-....+...+.+|......|+.+.|...+.
T Consensus       295 -al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~  343 (450)
T d1qsaa1         295 -ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILH  343 (450)
T ss_dssp             -HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHH
Confidence             4556899998888876543333446778999999999999999987754

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.12  E-value=0.87  Score=28.76  Aligned_cols=28  Identities=18%  Similarity=0.320  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020914            7 EMSLKDKGNEFFKAGNYLKAAALYTQAI   34 (320)
Q Consensus         7 a~~~~~~g~~~~~~g~~~~A~~~~~~al   34 (320)
                      +..+...|..+-..|+|++|+.+|.+++
T Consensus        15 A~~l~~~Av~~D~~g~y~eA~~~Y~~ai   42 (93)
T d1wfda_          15 AVAVLKRAVELDAESRYQQALVCYQEGI   42 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444555555555555555555555444

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.77  E-value=9.6  Score=30.08  Aligned_cols=49  Identities=6%  Similarity=0.028  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914           75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK  123 (320)
Q Consensus        75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  123 (320)
                      +.-....-..|...|.+++.+..++.++...+.+...+..++.++...+
T Consensus        99 ~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          99 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence            3334455667778889999999999999888888888888888776543

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.53  E-value=1.7  Score=36.84  Aligned_cols=53  Identities=9%  Similarity=-0.024  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914           41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD   93 (320)
Q Consensus        41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~   93 (320)
                      .......|...+..|+|+-|.+..+.++..+|++..+...++.+|.++|.-.+
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~  482 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE  482 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCc
Confidence            56666667777777777777777777777777777777777777777765544

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.12  E-value=4.9  Score=25.03  Aligned_cols=17  Identities=29%  Similarity=0.579  Sum_probs=9.1

Q ss_pred             HccCHHHHHHHHHHHHh
Q 020914           87 AMEQYDDALSAFQTALQ  103 (320)
Q Consensus        87 ~~~~~~~A~~~~~~al~  103 (320)
                      ..|+|++|+.+|..+++
T Consensus        27 ~~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_          27 AESRYQQALVCYQEGID   43 (93)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            45555555555555544