Citrus Sinensis ID: 020918

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
MQICPRGNFGCNIMKKIRNDEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVYKKHFIL
cccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHcccccccEEEcccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccEEEccccccccccccHHHHHHHHcccccccEEEEEEccccccccccHHHHHHcccccccccccccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHcccccccccEEcccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHccccHccEEEEccccccccccccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccEEEEccccccccEEcHHHHHHHHcccccccEEEEEEEccccccEEcccEEEEcccEEEcccccHHHccccccccEEEEEEcccccccccccHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccEcccccccccccccccccccccccEcc
mqicprgnfgcnimkkirndeispnkrslntkpfslsssssrpsrraVLCGvsynkgkfrlkgtinDVRNMRDLLINSFKFQEEGIIVlteeekdemysptKKNIQKALEWLVNdcrkgdslvfyfsghglrqpdfnndetdgfdeticpvdflkegmiidndinsiivkplkegvTLHAIVDACHSGTILDLEYVYNKYQmtwednrppsgarkatdgGLAICLSAcqdnqlasdtsaftgntMNGVMTYVLAEIVnkhpglsygDLLDLIYERIEEVkkndclvnTNFLRRFFkdklsqkptlsssgrfevykKHFIL
mqicprgnfgcnimkkirndeispnkrslntkpfslsssssrpsrravlcgvsynkgkfrlkgtindvrNMRDLLINSFKFQEEGIIVLteeekdemyspTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEEvkkndclvnTNFLRrffkdklsqkptlsssgrfevykkhfil
MQICPRGNFGCNIMKKIRNDEISPNKRSLNTKPFslsssssrpsrrAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVYKKHFIL
********FGCNIM********************************AVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEE**********KNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWE************DGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDK**********************
**********************************************AVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIE***************RFFKDKLSQKPTLSSSGRFEVYKKHFIL
MQICPRGNFGCNIMKKIRNDEISPNKRSLNT**************RAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNR*********DGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVYKKHFIL
*QICPRGNFGCNIMKKIRND**********TKPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVYKKHFIL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQICPRGNFGCNIMKKIRNDEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVYKKHFIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query320 2.2.26 [Sep-21-2011]
Q7XJE6367 Metacaspase-1 OS=Arabidop yes no 0.906 0.790 0.437 1e-68
Q7XJE5418 Metacaspase-2 OS=Arabidop no no 0.796 0.610 0.437 5e-63
Q9FMG1362 Metacaspase-3 OS=Arabidop no no 0.840 0.743 0.442 2e-60
Q4WJA1413 Metacaspase-1A OS=Neosart no no 0.793 0.615 0.336 4e-43
B0XPP3413 Metacaspase-1A OS=Neosart N/A no 0.793 0.615 0.336 4e-43
A7F075432 Metacaspase-1 OS=Scleroti N/A no 0.628 0.465 0.419 5e-43
Q7S4N5441 Metacaspase-1B OS=Neurosp N/A no 0.721 0.523 0.344 6e-43
A5D9W7410 Metacaspase-1 OS=Meyerozy N/A no 0.787 0.614 0.335 6e-43
A1D3V4435 Metacaspase-1A OS=Neosart N/A no 0.793 0.583 0.339 1e-42
A6SDT7431 Metacaspase-1 OS=Botryoti N/A no 0.6 0.445 0.427 1e-42
>sp|Q7XJE6|MCA1_ARATH Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1 Back     alignment and function desciption
 Score =  259 bits (663), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 133/304 (43%), Positives = 182/304 (59%), Gaps = 14/304 (4%)

Query: 29  LNTKPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIV 88
           ++  P  L     R  +RAV+CG+SY   +  LKG IND + MR LLIN FKF  + I++
Sbjct: 66  IHAPPGQLPHPHGR--KRAVICGISYRFSRHELKGCINDAKCMRHLLINKFKFSPDSILM 123

Query: 89  LTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETI 148
           LTEEE D    PTK+N++ AL WLV  C  GDSLVF++SGHG RQ ++N DE DG+DET+
Sbjct: 124 LTEEETDPYRIPTKQNMRMALYWLVQGCTAGDSLVFHYSGHGSRQRNYNGDEVDGYDETL 183

Query: 149 CPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVY---NKYQMTWE 205
           CP+DF  +GMI+D++IN+ IV+PL  GV LH+I+DACHSGT+LDL ++       Q  WE
Sbjct: 184 CPLDFETQGMIVDDEINATIVRPLPHGVKLHSIIDACHSGTVLDLPFLCRMNRAGQYVWE 243

Query: 206 DNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHP-GLS 264
           D+RP SG  K T GG AI +S C D+Q ++DTSA +  T  G MT+   + + +   G +
Sbjct: 244 DHRPRSGLWKGTAGGEAISISGCDDDQTSADTSALSKITSTGAMTFCFIQAIERSAQGTT 303

Query: 265 YGDLLDLIYERIEEVKKNDCLVNTNFLRRFFK--------DKLSQKPTLSSSGRFEVYKK 316
           YG LL+ +   I     +                        L Q+P L++   F+VY K
Sbjct: 304 YGSLLNSMRTTIRNTGNDGGGSGGVVTTVLSMLLTGGSAIGGLRQEPQLTACQTFDVYAK 363

Query: 317 HFIL 320
            F L
Sbjct: 364 PFTL 367
Cysteine protease that cleaves specifically after arginine or lysine residues. Does not cleave caspase-specific substrates. Acts as a positive regulator of cell death. Required for both oxidative stress cell death response and hypersensitive cell death response mediated by immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -
>sp|Q7XJE5|MCA2_ARATH Metacaspase-2 OS=Arabidopsis thaliana GN=AMC2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FMG1|MCA3_ARATH Metacaspase-3 OS=Arabidopsis thaliana GN=AMC3 PE=2 SV=1 Back     alignment and function description
>sp|Q4WJA1|MCA1A_ASPFU Metacaspase-1A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=casA PE=3 SV=3 Back     alignment and function description
>sp|B0XPP3|MCA1A_ASPFC Metacaspase-1A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=casA PE=3 SV=2 Back     alignment and function description
>sp|A7F075|MCA1_SCLS1 Metacaspase-1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=casA PE=3 SV=1 Back     alignment and function description
>sp|Q7S4N5|MCA1B_NEUCR Metacaspase-1B OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mca-2 PE=3 SV=1 Back     alignment and function description
>sp|A5D9W7|MCA1_PICGU Metacaspase-1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=MCA1 PE=3 SV=2 Back     alignment and function description
>sp|A1D3V4|MCA1A_NEOFI Metacaspase-1A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=casA PE=3 SV=2 Back     alignment and function description
>sp|A6SDT7|MCA1_BOTFB Metacaspase-1 OS=Botryotinia fuckeliana (strain B05.10) GN=casA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
224140789337 predicted protein [Populus trichocarpa] 0.934 0.887 0.609 1e-98
255569786362 caspase, putative [Ricinus communis] gi| 0.884 0.781 0.591 2e-96
356528042412 PREDICTED: metacaspase-1-like [Glycine m 0.875 0.679 0.595 3e-95
449438201363 PREDICTED: metacaspase-1-like [Cucumis s 0.943 0.831 0.562 1e-94
357476325390 Metacaspase-1 [Medicago truncatula] gi|3 0.871 0.715 0.590 5e-89
224140793228 predicted protein [Populus trichocarpa] 0.703 0.986 0.673 4e-83
363807170285 uncharacterized protein LOC100796278 [Gl 0.859 0.964 0.547 6e-83
356558688285 PREDICTED: metacaspase-3-like [Glycine m 0.859 0.964 0.537 8e-82
225465738 433 PREDICTED: metacaspase-1 [Vitis vinifera 0.921 0.681 0.514 4e-81
296087465358 unnamed protein product [Vitis vinifera] 0.921 0.824 0.514 5e-81
>gi|224140789|ref|XP_002323761.1| predicted protein [Populus trichocarpa] gi|222866763|gb|EEF03894.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/310 (60%), Positives = 236/310 (76%), Gaps = 11/310 (3%)

Query: 19  NDEISPNKR-SLNTKPFSL-----SSSSSRPS-RRAVLCGVSYNKGKFRLKGTINDVRNM 71
           ND IS  K  SLN KP  L     SSS +RP+ +RA+L GV+Y K K +LKGTINDV++M
Sbjct: 31  NDLISSKKPDSLNKKPCPLNIPGSSSSETRPAGKRALLIGVTY-KRKHKLKGTINDVKSM 89

Query: 72  RDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGL 131
           R+LL  +F F+EE I+VLTE+E +    PTKKNI K+LEWLV  C+ GDSLVFYFSGHGL
Sbjct: 90  RELLTLNFGFKEENILVLTEQEIEPELIPTKKNILKSLEWLVKGCQAGDSLVFYFSGHGL 149

Query: 132 RQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTIL 191
            QPDF  DE DGF E ICPVDF+ EGMI+DNDINS IV PLK+GVTLHAIVDACHSGT+L
Sbjct: 150 SQPDFEGDERDGFAENICPVDFMTEGMIVDNDINSTIVWPLKKGVTLHAIVDACHSGTVL 209

Query: 192 DLEYVYNKYQMTWEDNRPPSG-ARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMT 250
           DLE+VYN+ +  WEDN P SG ARK  DGGLAI LSAC DNQ+A+DT+AFTG TMNG MT
Sbjct: 210 DLEHVYNRQENKWEDNSPLSGNARKHPDGGLAISLSACLDNQVAADTTAFTGKTMNGAMT 269

Query: 251 YVLAEIVNKHPGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGR 310
           ++L +I+ K+ G +YGDLLD+++E +E+V ++ C      L++  K+ L Q P +S+S  
Sbjct: 270 FLLIKILKKYHGATYGDLLDMMHEELEKVNESRCFAE-KILKKITKNMLLQ-PQISASKP 327

Query: 311 FEVYKKHFIL 320
           F+VYK+HF+L
Sbjct: 328 FDVYKEHFVL 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255569786|ref|XP_002525857.1| caspase, putative [Ricinus communis] gi|223534862|gb|EEF36551.1| caspase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356528042|ref|XP_003532614.1| PREDICTED: metacaspase-1-like [Glycine max] Back     alignment and taxonomy information
>gi|449438201|ref|XP_004136878.1| PREDICTED: metacaspase-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357476325|ref|XP_003608448.1| Metacaspase-1 [Medicago truncatula] gi|355509503|gb|AES90645.1| Metacaspase-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224140793|ref|XP_002323763.1| predicted protein [Populus trichocarpa] gi|222866765|gb|EEF03896.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807170|ref|NP_001242347.1| uncharacterized protein LOC100796278 [Glycine max] gi|255635503|gb|ACU18103.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356558688|ref|XP_003547635.1| PREDICTED: metacaspase-3-like [Glycine max] Back     alignment and taxonomy information
>gi|225465738|ref|XP_002264984.1| PREDICTED: metacaspase-1 [Vitis vinifera] gi|147772679|emb|CAN64935.1| hypothetical protein VITISV_021552 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087465|emb|CBI34054.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
TAIR|locus:2204798367 MC1 "metacaspase 1" [Arabidops 0.856 0.746 0.465 8.8e-63
TAIR|locus:2117288418 MC2 "metacaspase 2" [Arabidops 0.737 0.564 0.479 8.8e-61
TAIR|locus:2173398362 MC3 "metacaspase 3" [Arabidops 0.831 0.734 0.451 9.6e-57
SGD|S000005723432 MCA1 "Ca2+-dependent cysteine 0.503 0.372 0.422 2.4e-43
UNIPROTKB|A4QTY2396 MCA1 "Metacaspase-1" [Magnapor 0.503 0.406 0.447 7.9e-43
ASPGD|ASPL0000043471420 AN2503 [Emericella nidulans (t 0.503 0.383 0.440 2.8e-42
CGD|CAL0003470448 MCA1 [Candida albicans (taxid: 0.5 0.357 0.415 3.7e-41
UNIPROTKB|Q5ANA8448 MCA1 "Metacaspase-1" [Candida 0.5 0.357 0.415 3.7e-41
POMBASE|SPCC1840.04425 pca1 "metacaspase Pca1" [Schiz 0.796 0.6 0.326 2e-33
TAIR|locus:2207350 418 MC4 "metacaspase 4" [Arabidops 0.440 0.337 0.401 3.4e-25
TAIR|locus:2204798 MC1 "metacaspase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 133/286 (46%), Positives = 180/286 (62%)

Query:    47 AVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQ 106
             AV+CG+SY   +  LKG IND + MR LLIN FKF  + I++LTEEE D    PTK+N++
Sbjct:    82 AVICGISYRFSRHELKGCINDAKCMRHLLINKFKFSPDSILMLTEEETDPYRIPTKQNMR 141

Query:   107 KALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINS 166
              AL WLV  C  GDSLVF++SGHG RQ ++N DE DG+DET+CP+DF  +GMI+D++IN+
Sbjct:   142 MALYWLVQGCTAGDSLVFHYSGHGSRQRNYNGDEVDGYDETLCPLDFETQGMIVDDEINA 201

Query:   167 IIVKPLKEGVTLHAIVDACHSGTILDLEYV--YNKY-QMTWEDNRPPSGARKATDGGLAI 223
              IV+PL  GV LH+I+DACHSGT+LDL ++   N+  Q  WED+RP SG  K T GG AI
Sbjct:   202 TIVRPLPHGVKLHSIIDACHSGTVLDLPFLCRMNRAGQYVWEDHRPRSGLWKGTAGGEAI 261

Query:   224 CLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHP-GLSYGDLLDLIYERIEEVKKN 282
              +S C D+Q ++DTSA +  T  G MT+   + + +   G +YG LL+ +   I     +
Sbjct:   262 SISGCDDDQTSADTSALSKITSTGAMTFCFIQAIERSAQGTTYGSLLNSMRTTIRNTGND 321

Query:   283 ---DCLVNTNFLRRFFKDK-----LSQKPTLSSSGRFEVYKKHFIL 320
                   V T  L            L Q+P L++   F+VY K F L
Sbjct:   322 GGGSGGVVTTVLSMLLTGGSAIGGLRQEPQLTACQTFDVYAKPFTL 367
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0004197 "cysteine-type endopeptidase activity" evidence=IDA
GO:0043068 "positive regulation of programmed cell death" evidence=IGI;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
TAIR|locus:2117288 MC2 "metacaspase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173398 MC3 "metacaspase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000005723 MCA1 "Ca2+-dependent cysteine protease" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|A4QTY2 MCA1 "Metacaspase-1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000043471 AN2503 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0003470 MCA1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ANA8 MCA1 "Metacaspase-1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
POMBASE|SPCC1840.04 pca1 "metacaspase Pca1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2207350 MC4 "metacaspase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.22LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVII.410.1
hypothetical protein (274 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
pfam00656228 pfam00656, Peptidase_C14, Caspase domain 2e-36
>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain Back     alignment and domain information 
 Score =  130 bits (328), Expect = 2e-36
 Identities = 55/267 (20%), Positives = 91/267 (34%), Gaps = 50/267 (18%)

Query: 45  RRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKN 104
             A++ G +Y      L+G  ND   +  LL     F+ E                T + 
Sbjct: 1   GLALIIGNNYFGHAAPLRGCDNDAEALAKLL-QRLGFEVEVF-----------DDLTAEE 48

Query: 105 IQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDI 164
           I++AL         GDS V  +SGHG++   +      G D  + PVD       +D+  
Sbjct: 49  IRRALREFAARADPGDSFVVVYSGHGVQGEVY------GGDGYLVPVDA------LDDVF 96

Query: 165 NSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLA-- 222
           N +    LK    L  I+DAC  G + D     +      E       A  +     A  
Sbjct: 97  NGLNCPSLKGKPKL-FIIDACRGGPLDDGVKSDSGSSGESESVDDSEAAGLSKIPAPADF 155

Query: 223 ICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLIYERIEEVKK 281
           +   +    Q++       G          L +++ ++ PGL   D+L  +  ++ +   
Sbjct: 156 LVAYSTTPGQVSYR-----GTGSGSWFIQALCQVLREYAPGLDLLDILTRVNRKVAD--- 207

Query: 282 NDCLVNTNFLRRFFKDKLSQKPTLSSS 308
                              Q P +SSS
Sbjct: 208 --------------ATGKKQMPCISSS 220

Length = 228

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 320
KOG1546362 consensus Metacaspase involved in regulation of ap 100.0
PF00656248 Peptidase_C14: Caspase domain; InterPro: IPR011600 99.98
cd00032243 CASc Caspase, interleukin-1 beta converting enzyme 99.87
smart00115241 CASc Caspase, interleukin-1 beta converting enzyme 99.85
PF01650256 Peptidase_C13: Peptidase C13 family; InterPro: IPR 99.56
COG4249380 Uncharacterized protein containing caspase domain 99.53
KOG1349309 consensus Gpi-anchor transamidase [Posttranslation 98.61
COG5206382 GPI8 Glycosylphosphatidylinositol transamidase (GP 98.32
KOG1348 477 consensus Asparaginyl peptidases [Posttranslationa 98.16
PF14538154 Raptor_N: Raptor N-terminal CASPase like domain 98.03
COG4249 380 Uncharacterized protein containing caspase domain 97.92
PF12770287 CHAT: CHAT domain 96.76
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 95.89
PF12070513 DUF3550: Protein of unknown function (DUF3550/UPF0 85.15
COG4995420 Uncharacterized protein conserved in bacteria [Fun 84.12
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-44  Score=320.40  Aligned_cols=269  Identities=40%  Similarity=0.670  Sum_probs=215.9

Q ss_pred             ccCCCCCCCCC--CCCCCCeEEEEEEecCCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHH
Q 020918           28 SLNTKPFSLSS--SSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNI  105 (320)
Q Consensus        28 ~~~~~~~~~~~--~~~~~~~~ALlIGi~y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I  105 (320)
                      +....|.++|.  ++...+|+||||||||.+....|+||+|||..|+++|.+++||+.++|.+|+|++++....||++||
T Consensus        45 ~~~~PpPq~~~~~~~~~gkrrAvLiGINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s~~~~PT~~Ni  124 (362)
T KOG1546|consen   45 SYPNPPPQPPYQYPQMAGKRRAVLIGINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDESPVRIPTGKNI  124 (362)
T ss_pred             CCCCCCCCCCCCCccccccceEEEEeecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCcccccCcHHHH
Confidence            33334444443  3456788999999999998899999999999999999999999999999999999888899999999


Q ss_pred             HHHHHHHHHhCCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhccccCCceEEEEEeCC
Q 020918          106 QKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDAC  185 (320)
Q Consensus       106 ~~al~~l~~~~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~~~~~~~v~~ilDcC  185 (320)
                      +.||.||++.++++|.|||+|||||.+.++.+|++.+|+||+++|.|+...+.|.++++.+.|++.+++++++++|+|+|
T Consensus       125 r~Al~wLV~~aq~gD~LvfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~plp~G~~lt~I~DSC  204 (362)
T KOG1546|consen  125 RRALRWLVESAQPGDSLVFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRPLPKGCKLTAISDSC  204 (362)
T ss_pred             HHHHHHHHhcCCCCCEEEEEecCCCCcCCCCCCCCCCCCcceeecccccccccccchHHHHHHHhccCCCceEEEEeecc
Confidence            99999999999999999999999999999998999999999999999998888888899999999999999999999999


Q ss_pred             CCCCcCcchhhhcccccc------ccC-----------------------------CCC--Cccc------cccCCCCcE
Q 020918          186 HSGTILDLEYVYNKYQMT------WED-----------------------------NRP--PSGA------RKATDGGLA  222 (320)
Q Consensus       186 ~Sg~~~~~~~~~~~~~~~------~~~-----------------------------~~~--~~~~------~~~~~~g~~  222 (320)
                      |||++.+.++....++..      |++                             ...  +...      ....+....
T Consensus       205 HSGgliDlp~i~~~~~~ir~~~l~~e~~~d~l~~~tG~~~ge~~~i~~~l~d~f~~dts~~~~~~~~~~~~~~~~~~d~~  284 (362)
T KOG1546|consen  205 HSGGLIDLPEIERTKGVIRNRNLPWEDHRDLLKAQTGTDGGEVGKIRGCLDDIFGEDTSPLPNGTIGDLGRQLKDSHDNG  284 (362)
T ss_pred             cCCCcccchhheecccccccCccchHHhHHHHHhhcCCCCceeeeeecchhhhhcccCCCCCCcchhhhhhhcccCCCCc
Confidence            999999887754433100      110                             000  0000      001112335


Q ss_pred             EEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCCCC
Q 020918          223 ICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQ  301 (320)
Q Consensus       223 ~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~q  301 (320)
                      ++||.|+.+|+|.+.... | ...|+|++|+.+.|.++ +..+..+|.-..+..+.                  .+++.|
T Consensus       285 illSgcqadqtSad~~~~-G-~~~gAms~Aiq~i~~~n~g~~~~~~lvl~~~~~~~------------------~~g~sQ  344 (362)
T KOG1546|consen  285 ILLSGCQADQTSADASTY-G-HLYGAMSNAIQEILTENKGRITNKLLVLRARGALK------------------KQGFSQ  344 (362)
T ss_pred             eEEecccccccccccccC-C-cchhHHHHHHHHHHhcCcccchhHHHHHHHhhhhh------------------ccCccc
Confidence            789999999999988753 3 35999999999999887 45555555544444332                  588999


Q ss_pred             ccccccccccccCCc
Q 020918          302 KPTLSSSGRFEVYKK  316 (320)
Q Consensus       302 ~P~~~~~~~~~~~~~  316 (320)
                      .|+|+||.+++.+..
T Consensus       345 ~P~L~csd~~~~~~~  359 (362)
T KOG1546|consen  345 EPGLYCSDPFDVAPF  359 (362)
T ss_pred             CccccCCccccccce
Confidence            999999999987643

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis) Back     alignment and domain information
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues Back     alignment and domain information
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only] Back     alignment and domain information
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain Back     alignment and domain information
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only] Back     alignment and domain information
>PF12770 CHAT: CHAT domain Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12070 DUF3550: Protein of unknown function (DUF3550/UPF0682); InterPro: IPR022709 This family of proteins is functionally uncharacterised Back     alignment and domain information
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
4f6o_A350 Crystal Structure Of The Yeast Metacaspase Yca1 Len 3e-36
4afr_A367 The Structure Of Metacaspase 2 (C213a Mutant) From 6e-23
4afp_A367 The Structure Of Metacaspase 2 From T. Brucei Deter 1e-22
4af8_A367 The Structural Basis For Metacaspase Substrate Spec 1e-22
3bij_A285 Crystal Structure Of Protein Gsu0716 From Geobacter 3e-11
>pdb|4F6O|A Chain A, Crystal Structure Of The Yeast Metacaspase Yca1 Length = 350 Back     alignment and structure 
Iteration: 1

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 154/310 (49%), Gaps = 64/310 (20%)
Query: 47  AVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQ 106
           A++ G++Y   K +L+G IND  N+ + L N + +  + I++LT+++ D +  PT+ N+ 
Sbjct: 56  ALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMI 115
Query: 107 KALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINS 166
           +A++WLV D +  DSL  ++SGHG +  D + DE DG D+ I PVDF  +G IID++++ 
Sbjct: 116 RAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHD 175
Query: 167 IIVKPLKEGVTLHAIVDACHSGTILDLEYVYN-----KYQMTWEDNRP---------PSG 212
           I+VKPL++GV L A+ D+CHSGT+LDL Y Y+     K    W+D             +G
Sbjct: 176 IMVKPLQQGVRLTALFDSCHSGTVLDLPYTYSTKGIIKEPNIWKDVGQDGLQAAISYATG 235
Query: 213 ARKATDGGLA-----------------------------ICLSACQDNQLASDTSAFTGN 243
            R A  G L                              + LS  +DNQ ++D      N
Sbjct: 236 NRAALIGSLGSIFKTVKGGMGNNVDRERVRQIKFSAADVVMLSGSKDNQTSADAVEDGQN 295
Query: 244 TMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKP 303
           T  G M++   +++   P  SY  LL                     +R+    K SQKP
Sbjct: 296 T--GAMSHAFIKVMTLQPQQSYLSLL-------------------QNMRKELAGKYSQKP 334
Query: 304 TLSSSGRFEV 313
            LSSS   +V
Sbjct: 335 QLSSSHPIDV 344
>pdb|4AFR|A Chain A, The Structure Of Metacaspase 2 (C213a Mutant) From T. Brucei Length = 367 Back     alignment and structure
>pdb|4AFP|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined In The Presence Of Samarium Length = 367 Back     alignment and structure
>pdb|4AF8|A Chain A, The Structural Basis For Metacaspase Substrate Specificity And Activation Length = 367 Back     alignment and structure
>pdb|3BIJ|A Chain A, Crystal Structure Of Protein Gsu0716 From Geobacter Sulfurreducens. Northeast Structural Genomics Target Gsr13 Length = 285 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
4f6o_A350 Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 4e-67
4af8_A367 Metacaspase MCA2; hydrolase, cysteine peptidase, c 4e-65
3bij_A285 Uncharacterized protein GSU0716; alpha-beta protei 7e-48
3uoa_B 390 Mucosa-associated lymphoid tissue lymphoma transl 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Length = 350 Back     alignment and structure
 Score =  213 bits (542), Expect = 4e-67
 Identities = 99/341 (29%), Positives = 159/341 (46%), Gaps = 65/341 (19%)

Query: 23  SPNKRSLNTKPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQ 82
            P  +++         S     R+A++ G++Y   K +L+G IND  N+ + L N + + 
Sbjct: 32  PPQTQTIQGTDQPYQYSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYS 91

Query: 83  EEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETD 142
            + I++LT+++ D +  PT+ N+ +A++WLV D +  DSL  ++SGHG +  D + DE D
Sbjct: 92  SDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDEED 151

Query: 143 GFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYN---- 198
           G D+ I PVDF  +G IID++++ I+VKPL++GV L A+ D+CHSGT+LDL Y Y+    
Sbjct: 152 GMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTYSTKGI 211

Query: 199 -KYQMTWEDNRPPS--------------------------------------GARKATDG 219
            K    W+D                                             +     
Sbjct: 212 IKEPNIWKDVGQDGLQAAISYATGNRAALIGSLGSIFKTVKGGMGNNVDRERVRQIKFSA 271

Query: 220 GLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEEV 279
              + LS  +DNQ ++D  A       G M++   +++   P  SY  LL  +       
Sbjct: 272 ADVVMLSGSKDNQTSAD--AVEDGQNTGAMSHAFIKVMTLQPQQSYLSLLQNM------- 322

Query: 280 KKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVYKKHFIL 320
                       R+    K SQKP LSSS   +V  + FI+
Sbjct: 323 ------------RKELAGKYSQKPQLSSSHPIDVNLQ-FIM 350
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Length = 367 Back     alignment and structure
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca} Length = 285 Back     alignment and structure
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A* Length = 390 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
4f6o_A350 Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 100.0
4af8_A367 Metacaspase MCA2; hydrolase, cysteine peptidase, c 100.0
3bij_A285 Uncharacterized protein GSU0716; alpha-beta protei 100.0
3uoa_B 390 Mucosa-associated lymphoid tissue lymphoma transl 99.96
3e4c_A302 Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna 99.88
1m72_A272 Caspase-1; caspase, cysteine protease, hydrolase-h 99.83
2nn3_C310 Caspase-1; cysteine protease, hydrolase; 3.00A {Sp 99.82
2j32_A250 Caspase-3; Pro-caspase3, thiol protease, hydrolase 99.82
1f1j_A305 Caspase-7 protease; caspase-7, cysteine protease, 99.8
4ehd_A277 Caspase-3; caspase, apoptosis, allosteric inhibiti 99.8
3sir_A259 Caspase; hydrolase; 2.68A {Drosophila melanogaster 99.8
1nw9_B277 Caspase 9, apoptosis-related cysteine protease; XI 99.78
3od5_A278 Caspase-6; caspase domain, apoptotic protease, hyd 99.77
3h11_B271 Caspase-8; cell death, apoptosis, caspase, alterna 99.77
2fp3_A316 Caspase NC; apoptosis, initiator caspase activatio 99.73
2h54_A178 Caspase-1; allosteric site, dimer interface, hydro 99.69
3h11_A272 CAsp8 and FADD-like apoptosis regulator; cell deat 99.35
1pyo_A167 Caspase-2; apoptosis, caspase, alpha-beta, thiol p 99.12
2dko_A146 Caspase-3; low barrier hydrogen bond, caspase, dru 99.01
1qtn_A164 Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst 98.95
3p45_A179 Caspase-6; protease, huntington'S disease, physio 98.81
2ql9_A173 Caspase-7; cysteine protease, apoptosis, thiol pro 98.8
2dko_B103 Caspase-3; low barrier hydrogen bond, caspase, dru 94.1
2xzd_B118 Caspase-3; hydrolase-protein binding complex, de n 93.66
2ql9_B97 Caspase-7; cysteine protease, apoptosis, thiol pro 93.59
1pyo_B105 Caspase-2; apoptosis, caspase, alpha-beta, thiol p 93.0
1sc3_B88 Interleukin-1 beta convertase; malonate-bound casp 92.86
3rjm_B117 Caspase-2; caspase-2, caspase, hydrolase-hydrolase 92.49
1qtn_B95 Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst 92.39
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=2.4e-51  Score=384.57  Aligned_cols=261  Identities=37%  Similarity=0.662  Sum_probs=197.9

Q ss_pred             CCCCCCCeEEEEEEecCCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCC
Q 020918           38 SSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCR  117 (320)
Q Consensus        38 ~~~~~~~~~ALlIGi~y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~  117 (320)
                      .++..++++||||||+|+....+|++|++||++|+++|++.+||++++|.+|+|++..+...||+++|+++|.+|+++++
T Consensus        47 ~s~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a~  126 (350)
T 4f6o_A           47 YSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQ  126 (350)
T ss_dssp             CCCCCSCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTCC
T ss_pred             cCCCCCCEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHhCC
Confidence            44667899999999997776899999999999999999977899999999999976444456899999999999999999


Q ss_pred             CCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhccccCCceEEEEEeCCCCCCcCcchhhh
Q 020918          118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVY  197 (320)
Q Consensus       118 ~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~~~~~~~v~~ilDcC~Sg~~~~~~~~~  197 (320)
                      ++|++||||||||.+..+.+|+|.+|+|++|+|+|+...+.|.+++|.++|.+.++++++|++|+||||||++.+.++.+
T Consensus       127 pgD~llfYFSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~~l~~g~~vt~IlD~ChSGt~ldlp~~~  206 (350)
T 4f6o_A          127 PNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTY  206 (350)
T ss_dssp             TTCEEEEEEESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEECSSSCTTTTCCSEEE
T ss_pred             CCCEEEEEEcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHhhcCCCCeEEEEEccCCCCccccccccc
Confidence            99999999999999998888888999999999999887788999999999888788899999999999999999987654


Q ss_pred             cccc-----ccccCCCC-------------------------------------Ccc-ccccCCCCcEEEEeecCCCccc
Q 020918          198 NKYQ-----MTWEDNRP-------------------------------------PSG-ARKATDGGLAICLSACQDNQLA  234 (320)
Q Consensus       198 ~~~~-----~~~~~~~~-------------------------------------~~~-~~~~~~~g~~~vlsA~~~~q~s  234 (320)
                      ..++     ..|+....                                     .+. .....+++.+++||+|+.+|+|
T Consensus       207 ~~~g~~~e~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SgCkD~QtS  286 (350)
T 4f6o_A          207 STKGIIKEPNIWKDVGQDGLQAAISYATGNRAALIGSLGSIFKTVKGGMGNNVDRERVRQIKFSAADVVMLSGSKDNQTS  286 (350)
T ss_dssp             ETTEEEECCCC---------------------------------------------------CCCSEEEEEEEEC-----
T ss_pred             ccccccCcchhhhhccccccchhhhhccccchhhcccchhhhhhhccccccccchhhhhhccCCCCCEEEEEecCCCCch
Confidence            4322     11221000                                     000 0113445678999999999999


Q ss_pred             ccccccCCCcccchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCCCCccccccccccccC
Q 020918          235 SDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVY  314 (320)
Q Consensus       235 ~e~~~~~g~~~~g~FT~aLl~~L~~~g~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~~~  314 (320)
                      .|... +| ..+|+|||+|+++|+.++.+|+.+|+..++..++                   .+|.|+|||++|+++|+.
T Consensus       287 aD~~~-~g-~~~GAmTyafi~aL~~~p~~tY~~Ll~~~r~~L~-------------------~kysQ~PQLs~s~~~d~~  345 (350)
T 4f6o_A          287 ADAVE-DG-QNTGAMSHAFIKVMTLQPQQSYLSLLQNMRKELA-------------------GKYSQKPQLSSSHPIDVN  345 (350)
T ss_dssp             ----------CCCHHHHHHHHHHHHCCCCBHHHHHHHHHHHHT-------------------TTCSCEEEEEESSCCCTT
T ss_pred             hhhcc-CC-ceeehhHHHHHHHHHHCCCCCHHHHHHHHHHHHH-------------------hcCCCCceecccCCCCCC
Confidence            99874 23 5699999999999999999999999999999885                   468999999999999997


Q ss_pred             CcccCC
Q 020918          315 KKHFIL  320 (320)
Q Consensus       315 ~~~~~~  320 (320)
                      . .|++
T Consensus       346 ~-~f~~  350 (350)
T 4f6o_A          346 L-QFIM  350 (350)
T ss_dssp             S-BCCC
T ss_pred             c-cccC
Confidence            7 5653
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Back     alignment and structure
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca} Back     alignment and structure
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A* Back     alignment and structure
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens} Back     alignment and structure
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B Back     alignment and structure
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda} Back     alignment and structure
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A Back     alignment and structure
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A* Back     alignment and structure
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A Back     alignment and structure
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A Back     alignment and structure
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A Back     alignment and structure
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B* Back     alignment and structure
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B* Back     alignment and structure
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster} Back     alignment and structure
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ... Back     alignment and structure
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A Back     alignment and structure
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A Back     alignment and structure
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ... Back     alignment and structure
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A* Back     alignment and structure
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens} Back     alignment and structure
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A Back     alignment and structure
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ... Back     alignment and structure
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B Back     alignment and structure
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B Back     alignment and structure
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B Back     alignment and structure
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ... Back     alignment and structure
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens} Back     alignment and structure
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 320
d1nw9b_277 c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [Tax 2e-07
g1sc3.1261 c.17.1.1 (A:,B:) Interleukin-1beta converting enzy 2e-06
d1m72a_256 c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera 2e-05
>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} Length = 277 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 33/272 (12%), Positives = 57/272 (20%), Gaps = 59/272 (21%)

Query: 62  KGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDS 121
            G+  D   +R    +S  F    + V  +    +M       +   LE    D    D 
Sbjct: 42  TGSNIDCEKLRRRF-SSLHFM---VEVKGDLTAKKM-------VLALLELARQDHGALDC 90

Query: 122 LVFYFSGHGLRQPDFN-NDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHA 180
            V     HG +           G D     V+ +       +        P   G     
Sbjct: 91  CVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSC-------PSLGGKPKLF 143

Query: 181 IVDACHSGTI-----------------LDLEYVYNKYQMTWEDNRPPSGARKATDGGLAI 223
            + AC                       + E     +Q                      
Sbjct: 144 FIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIF 203

Query: 224 CLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLIYERIEEVKKN 282
              +     ++                  L +I  +        DL  L+      V   
Sbjct: 204 VSYSTFPGFVSWR-----DPKSGSWYVETLDDIFEQWAHSE---DLQSLLLRVANAVSV- 254

Query: 283 DCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVY 314
                        K    Q P   +  R +++
Sbjct: 255 -------------KGIYKQMPGCFNFLRKKLF 273
>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]} Length = 256 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
g1sc3.1261 Interleukin-1beta converting enzyme (a cysteine pr 99.93
d1nw9b_277 Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} 99.91
g1qtn.1242 Caspase-8 {Human (Homo sapiens) [TaxId: 9606]} 99.88
d1m72a_256 Caspase-1 {Fall armyworm (Spodoptera frugiperda) [ 99.87
g1nme.1238 Apopain (caspase-3, cpp32) {Human (Homo sapiens) [ 99.85
g1pyo.1257 Caspase-2 {Human (Homo sapiens) [TaxId: 9606]} 99.85
d1f1ja_245 Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} 99.81
>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]} Back     information, alignment and structure
>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure