Citrus Sinensis ID: 020931

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDLGSSSN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHEEcccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHcccccEEEcccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccEEEEEEEccccccccHHHHHHHcccccccccEEEcccccccccccEEccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccEEEEcccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcccccccccHcccccEcHHHHHHHccEEEEcccccccccccHHHcccccccccEEEEEcccccHHHHHHHHHccccccccEEEEcccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHccccHHHccccccccccEEEEEEEEEEEEcccccccEEEEEEEccccccccHHHHHHHHHHHHHccEEEEcccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccEEEEccEEEEcccccc
Coil and Loop (DISEMBL)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAgdnlvskcptwswesgepskrksylpadkqflITRNVPCLRRAASVEeeyegaggeilvdnedndgwlathgkpkakcdededdnlpsmeAVEISKNNNVRAIStyfggeeeeeedipdmaeynepdsiienetdpatlpstylvahepdddnilrtrtydisitydkyyqtprvwltgydeSRMLLKTELILEDvsqdharktvtiedhphltgkhasihpcrhgaVMKKIIDVLVsrgvepevDKYLFLFLKFVASviptieydytmdfdlgsssn
Flexible Loop (DISEMBL)
melqqkfygifkgtvekitshrtvsafkekgVLSVSEFVLAGdnlvskcptwswesgepskrksylpadkqflitrnVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMeaveisknnnvRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLvahepdddnilrtrtydisitydkyyqtprvWLTGYDESRMLLKTELILEDVSQDHARKTVTiedhphltgkhasihpcrhgAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDfdlgsssn
Low Complexity Region (SEG)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGeeeeeeDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDLGSSSN
Disordered region (IsUnstruct)
*****KFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWE*********YLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNE**DGWL*************************************************************************TYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFD******
Disordered Region (DISOPRED)
*******YGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHG******************************************EDIPDMAEYNEPDSIIENETDPATLPS**************RTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCRHGAVMKKII*********PEVDKYLFLFLKFVASVIPTIEYDYTMD*DLG****
Disordered Region (DISEMBL)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTW***********SYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFG********IPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDLGSSSN
Disordered Region (DISPRO)
*ELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLAT*************************************************************NETD***LPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDLG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDLGSSSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
Q0WWQ1	313	Autophagy-related protein	yes	no	0.978	0.996	0.814	1e-153
Q550A8	338	Autophagy-related protein	yes	no	0.962	0.908	0.465	2e-73
Q5I0S6	312	Ubiquitin-like-conjugatin	yes	no	0.890	0.910	0.450	8e-63
Q6PFS7	317	Ubiquitin-like-conjugatin	yes	no	0.909	0.914	0.459	1e-62
Q6GQE7	313	Ubiquitin-like-conjugatin	N/A	no	0.937	0.955	0.436	1e-62
Q9CPX6	314	Ubiquitin-like-conjugatin	yes	no	0.884	0.898	0.468	2e-62
Q0VCL3	314	Ubiquitin-like-conjugatin	yes	no	0.877	0.891	0.478	2e-61
Q9NT62	314	Ubiquitin-like-conjugatin	yes	no	0.871	0.885	0.458	3e-61
Q6AZ50	314	Ubiquitin-like-conjugatin	yes	no	0.877	0.891	0.461	7e-60
P0CM34	385	Autophagy-related protein	yes	no	0.884	0.732	0.349	5e-46

>sp|Q0WWQ1|ATG3_ARATH Autophagy-related protein 3 OS=Arabidopsis thaliana GN=ATG3 PE=1 SV=2

 Score =  540 bits (1390), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 259/318 (81%), Positives = 290/318 (91%), Gaps = 6/318 (1%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKGK 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
           E+  DNLPSM+A++I++ N +++I TYFGGEE++  DIPDM E++E D+++EN  DPATL
Sbjct: 121 EE--DNLPSMDALDINEKNTIQSIPTYFGGEEDD--DIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query: 241 HARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASV 300
           HARKTVTIEDHPHL GKHAS+HPCRHGAVMKKIIDVL+SRGVEPEVDKYLFLFLKF+ASV
Sbjct: 235 HARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASV 294

Query: 301 IPTIEYDYTMDFDLGSSS 318
           IPTIEYDYTMDFDLGSSS
Sbjct: 295 IPTIEYDYTMDFDLGSSS 312

E2 conjugating enzyme responsible for the E2-like covalent binding of phosphatidylethanolamine to the C-terminal Gly of ATG8. This step is required for the membrane association of ATG8. The formation of the ATG8-phosphatidylethanolamine conjugate is essential for autophagy and for the cytoplasm to vacuole transport (Cvt).
Arabidopsis thaliana (taxid: 3702)

>sp|Q550A8|ATG3_DICDI Autophagy-related protein 3 OS=Dictyostelium discoideum GN=atg3 PE=3 SV=3

 Score =  275 bits (704), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/337 (46%), Positives = 202/337 (59%), Gaps = 30/337 (8%)

Query: 3   LQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKR 62
            QQ  +  +  TVEK+T   + S F E+GVL+  EFV AGD L  KC TW+WESG+PS+ 
Sbjct: 5   FQQAVHKAYVKTVEKVTPTLSTSKFLEEGVLTPEEFVQAGDLLTDKCQTWTWESGDPSRN 64

Query: 63  KSYLPADKQFLITRNVPCLRRAASVEEEYEGAGG-EILVDNEDNDGWLATHGKPKAKCDE 121
            SYLP +KQFL+TRNVPC  R  ++E E + +   EI ++++  D W+A   +P    D+
Sbjct: 65  VSYLPKEKQFLLTRNVPCYNRVRTLENESKASKADEIQIEDDGEDSWVA--PQPVGNQDD 122

Query: 122 DEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYN----------EPDSII 171
            ED+ +  + +++I         +T          +  D  E            + D+II
Sbjct: 123 IEDEKV-DISSLKIDDKKPNTTTTTTAKPTNNNNNNNDDEDEDEDGDIPDLDDFQDDNII 181

Query: 172 ENETDPATLPSTYLVAHEP---------------DDDNILRTRTYDISITYDKYYQTPRV 216
           E E DPA L                         D+DNILRTRTYDISITYDKYYQTPRV
Sbjct: 182 EEE-DPAVLSKNNKTTTTTTANNNNNNNSENKVEDNDNILRTRTYDISITYDKYYQTPRV 240

Query: 217 WLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDV 276
           WL GYDE+R  LK E I ED+S+DHA KTVTI+ HPHL    A IHPCRH AVMKK++D 
Sbjct: 241 WLFGYDENRKPLKPEEIFEDISEDHAHKTVTIDSHPHLGISFAYIHPCRHAAVMKKLVDR 300

Query: 277 LVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFD 313
               G EP VD+YLFLFLKF++ VIPTIEYD+T++FD
Sbjct: 301 QSENGKEPRVDQYLFLFLKFISVVIPTIEYDFTLEFD 337

E2 conjugating enzyme responsible for the E2-like covalent binding of phosphatidylethanolamine to the C-terminal Gly of atg8. This step is required for the membrane association of atg8. The formation of the atg8-phosphatidylethanolamine conjugate is essential for autophagy.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5I0S6|ATG3_XENTR Ubiquitin-like-conjugating enzyme ATG3 OS=Xenopus tropicalis GN=atg3 PE=2 SV=1

 Score =  240 bits (613), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 132/293 (45%), Positives = 176/293 (60%), Gaps = 9/293 (3%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EF+ AGD+LV  CPTW W +GE SK K YLP DKQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEESKIKPYLPNDKQFLMTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDNDGWLAT-HGKPKAKCDEDEDDNLPSMEAVEISKNNNVRA 143
             +E  Y      I+ +++ + GW+ T H       +  ++  L + +  + + N  V  
Sbjct: 86  KQME--YSDEQEAIIEEDDGDGGWVDTFHHSLTGVTEAVKEITLETQDCGKTTSNIAVDD 143

Query: 144 ISTYFGGEEEEEEDIPDMAEYNEPDSIIE-NETDPATLPSTYLVAHEPDDDNILRTRTYD 202
                 GE  + ED  +    +  D+ ++ ++   A  P   L      +D IL+TRTYD
Sbjct: 144 DDDDDEGEAADMEDYEESGLLDNDDATVDTSKIKEACKPKADLGG----EDAILQTRTYD 199

Query: 203 ISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHL-TGKHASI 261
           + ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTVTIE+HPHL      S+
Sbjct: 200 LYITYDKYYQTPRLWLFGYDEQRRPLTVENMYEDISQDHVKKTVTIENHPHLPPPPMCSV 259

Query: 262 HPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDL 314
           HPCRH  VMKKII+ +   G E  V  YL +FLKFV +VIPTIEYDYT  F +
Sbjct: 260 HPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYDYTRHFTM 312

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of atg8-like proteins (gabarap, gabarapl1, gabarapl2 or map1lc3a) to phosphatidylethanolamine (PE). PE-conjugation to atg8-like proteins is essential for autophagy. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of atg12 to itself, atg12 conjugation to atg3 playing a role in mitochondrial homeostasis but not in autophagy.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6PFS7|ATG3_DANRE Ubiquitin-like-conjugating enzyme ATG3 OS=Danio rerio GN=atg3 PE=2 SV=1

 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/324 (45%), Positives = 188/324 (58%), Gaps = 34/324 (10%)

Query: 9   GIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPA 68
           G   G  E +T     S FKE GV++  EFV AGD+LV  CPTW W SGE +K K YLP 
Sbjct: 10  GTALGVAEFLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWKWASGEEAKVKPYLPN 69

Query: 69  DKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDE----- 121
           DKQFL+TRNVPC +R   +E   E    E +++ +D DG W+ T H        E     
Sbjct: 70  DKQFLLTRNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTFHNSGVTGVTEAVREI 126

Query: 122 --DEDDNLPSMEAVEISKNNNVR--AISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDP 177
             D  DN+          N NV+  A       +++EE +  DM EY E   +   ETD 
Sbjct: 127 SLDNKDNM----------NMNVKTGACGNSGDDDDDEEGEAADMEEYEESGLL---ETDD 173

Query: 178 ATLPSTYLV------AHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTE 231
           ATL ++ +       A    +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  +
Sbjct: 174 ATLDTSKMADLSKTKAEAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEDRQPLTVD 233

Query: 232 LILEDVSQDHARKTVTIEDHPHL-TGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYL 290
            + ED+SQDH +KTVTIE+HP+L      S+HPCRH  VMKKII+ +   G E  V  YL
Sbjct: 234 QMYEDISQDHVKKTVTIENHPNLPPPAMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYL 293

Query: 291 FLFLKFVASVIPTIEYDYTMDFDL 314
            +FLKFV +VIPTIEYDYT  F +
Sbjct: 294 LIFLKFVQAVIPTIEYDYTRHFTM 317

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of atg8-like proteins (gabarap, gabarapl1, gabarapl2 or map1lc3a) to phosphatidylethanolamine (PE). PE-conjugation to atg8-like proteins is essential for autophagy. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of atg12 to itself, atg12 conjugation to atg3 playing a role in mitochondrial homeostasis but not in autophagy.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6GQE7|ATG3_XENLA Ubiquitin-like-conjugating enzyme ATG3 OS=Xenopus laevis GN=atg3 PE=2 SV=1

 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/323 (43%), Positives = 189/323 (58%), Gaps = 24/323 (7%)

Query: 5   QKFYGIFKGTVEKITSHRTV----SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           Q  +   KG   ++  + T     S FKE GV++  EF+ AGD+LV  CPTW W +GE S
Sbjct: 2   QNVFNTVKGKALEVAEYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEES 61

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLAT--HGKPKAK 118
           K K YLP DKQFL+T+NVPC +R   +E  Y      I+ +++ + GW+ T  H      
Sbjct: 62  KIKPYLPNDKQFLMTKNVPCYKRCKQME--YSDEQEAIIEEDDGDGGWVDTFHHTGLSGV 119

Query: 119 CDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPA 178
            +  ++  L + +  + + N  V        GE        DM +Y E   ++EN  D A
Sbjct: 120 TEAVKEITLETQDCGKTTDNIAVCDDDDDDEGE------AADMEDYEE-SGLLEN--DDA 170

Query: 179 TLPSTYLV-AHEPD-----DDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTEL 232
           T+ ++ +  A +P      +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E 
Sbjct: 171 TVDTSKIKEACKPKADLGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRRPLAVEN 230

Query: 233 ILEDVSQDHARKTVTIEDHPHL-TGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLF 291
           + ED+SQDH +KTVTIE+HPHL      S+HPCRH  VMKKII+ +   G E  V  YL 
Sbjct: 231 MYEDISQDHVKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLL 290

Query: 292 LFLKFVASVIPTIEYDYTMDFDL 314
           +FLKFV +VIPTIEYDYT  F +
Sbjct: 291 IFLKFVQAVIPTIEYDYTRHFTM 313

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of atg8-like proteins (gabarap, gabarapl1, gabarapl2 or map1lc3a) to phosphatidylethanolamine (PE). PE-conjugation to atg8-like proteins is essential for autophagy. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of atg12 to itself, atg12 conjugation to atg3 playing a role in mitochondrial homeostasis but not in autophagy.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9CPX6|ATG3_MOUSE Ubiquitin-like-conjugating enzyme ATG3 OS=Mus musculus GN=Atg3 PE=1 SV=1

 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/297 (46%), Positives = 183/297 (61%), Gaps = 15/297 (5%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP DKQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTDKQFLVTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAI 144
             +E  Y      I+ +++ + GW+ T+         +    + ++E+ +  K  +  A+
Sbjct: 86  KQME--YSDELEAIIEEDDGDGGWVDTYHNTGITGITEAVKEI-TLESKDSIKLQDCSAL 142

Query: 145 STYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNILRT 198
                 +EE+E +  DM EY E   +   ETD ATL +  +V      A    +D IL+T
Sbjct: 143 CD--EEDEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKADAGGEDAILQT 197

Query: 199 RTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHL-TGK 257
           RTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTVTIE+HPHL    
Sbjct: 198 RTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTIENHPHLPPPP 257

Query: 258 HASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDL 314
             S+HPCRH  VMKKII+ +   G E  V  YL +FLKFV +VIPTIEYDYT  F +
Sbjct: 258 MCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYDYTRHFTM 314

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0VCL3|ATG3_BOVIN Ubiquitin-like-conjugating enzyme ATG3 OS=Bos taurus GN=ATG3 PE=2 SV=1

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 143/299 (47%), Positives = 184/299 (61%), Gaps = 19/299 (6%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP+ KQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPSGKQFLVTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDEDEDDNLPSMEAVEISKNNNVR 142
             +E   E    E +++ +D DG W+ T H    A   E   +   ++E+ +  K  +  
Sbjct: 86  KQMEYSDEL---EAIIEEDDGDGGWVDTYHNTGIAGITEAVKEI--TLESKDSIKLQDCS 140

Query: 143 AISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNIL 196
           A+      EEE+E +  DM EY E   +   ETD ATL +  +V           +D IL
Sbjct: 141 ALCEEE--EEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKTDAGGEDAIL 195

Query: 197 RTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHL-T 255
           +TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTVTIE+HPHL  
Sbjct: 196 QTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTIENHPHLPP 255

Query: 256 GKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDL 314
               S+HPCRH  VMKKII+ +   G E  V  YL +FLKFV +VIPTIEYDYT  F +
Sbjct: 256 PPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYDYTRHFTM 314

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9NT62|ATG3_HUMAN Ubiquitin-like-conjugating enzyme ATG3 OS=Homo sapiens GN=ATG3 PE=1 SV=1

 Score =  235 bits (600), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/301 (45%), Positives = 181/301 (60%), Gaps = 23/301 (7%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDNDGWLAT-HGKPKAKCDEDEDDNLPSMEAVEISKNNNVR- 142
             +E  Y      I+ +++ + GW+ T H        E       +++ + +   +N+R 
Sbjct: 86  KQME--YSDELEAIIEEDDGDGGWVDTYHNTGITGITE-------AVKEITLENKDNIRL 136

Query: 143 --AISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDN 194
               +     E+E+E +  DM EY E   +   ETD ATL +  +V           +D 
Sbjct: 137 QDCSALCEEEEDEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKTDAGGEDA 193

Query: 195 ILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHL 254
           IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTVTIE+HPHL
Sbjct: 194 ILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTIENHPHL 253

Query: 255 -TGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFD 313
                 S+HPCRH  VMKKII+ +   G E  V  YL +FLKFV +VIPTIEYDYT  F 
Sbjct: 254 PPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYDYTRHFT 313

Query: 314 L 314
           +
Sbjct: 314 M 314

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6AZ50|ATG3_RAT Ubiquitin-like-conjugating enzyme ATG3 OS=Rattus norvegicus GN=Atg3 PE=2 SV=1

 Score =  231 bits (588), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 138/299 (46%), Positives = 182/299 (60%), Gaps = 19/299 (6%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDNDGWLATHGKP--KAKCDEDEDDNLPSMEAVEISKNNNVR 142
             +E  Y      I+ +++ + GW+ T+         +  ++  L S +++++   + + 
Sbjct: 86  KQME--YSDELEAIIEEDDGDGGWVDTYHNTGITGITEAVKEITLESKDSIKLQDCSVLC 143

Query: 143 AISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNIL 196
                    EEEE +  DM EY E   +   ETD ATL +  +V      A    +D IL
Sbjct: 144 DEEE-----EEEEGEAADMEEYEESGLL---ETDEATLDTRRIVEACKAKADAGGEDAIL 195

Query: 197 RTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHL-T 255
           +TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTVTIE+HPHL  
Sbjct: 196 QTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTIENHPHLPP 255

Query: 256 GKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDL 314
               S+HPCRH  VMKKII+ +   G E  V  YL +FLKFV +VIPTIEYDYT  F +
Sbjct: 256 PPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYDYTRHFTM 314

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P0CM34|ATG3_CRYNJ Autophagy-related protein 3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATG3 PE=3 SV=1

 Score =  184 bits (468), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 174/358 (48%), Gaps = 76/358 (21%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE G ++  EFV AGD L  K P W WE GE S+ + +LP DKQ+L+TRNVPCLRRA
Sbjct: 26  SKFKEHGRITPEEFVAAGDFLTFKFPVWQWEKGESSRARDFLPPDKQYLVTRNVPCLRRA 85

Query: 85  ASVEEEYEGAGGEILVDNEDN--------DGWLATH---GKPKAKCDEDEDDNLPSMEAV 133
            +V+        E L+   D+        D W+ATH     P    D DE  ++P  ++ 
Sbjct: 86  TAVDYTNADEDAEKLLSFLDDAEEAPGPDDDWVATHINRSPPHRPTDMDEIPDIP--DSP 143

Query: 134 EISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL----PSTYLVAHE 189
             +    +  ++   GG+ EE+E        +  +  +E+  D A +    PS   V + 
Sbjct: 144 TTAPTREMAGLNVSSGGKLEEDEIPDIDDIPDMDEEGLEDLEDDAAVRIVHPSEAEV-NS 202

Query: 190 PDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIE 249
               N+L+ RTYD  I+YDK+YQTPR WL GYDE +  L    + +DV  DHA KT+T+E
Sbjct: 203 TAGKNLLQVRTYDCIISYDKHYQTPRFWLFGYDEHKNPLTPAQVFQDVPADHAFKTMTME 262

Query: 250 DHPHLTGKHASIHPCRHGAVMKKIIDVL-------------------------------- 277
             PH   + AS+HPC+H +VMKK ID +                                
Sbjct: 263 SFPHSGAQLASVHPCKHASVMKKFIDRMEAAQGPAPTAEPETISSTSGTSGSAGGKEEKE 322

Query: 278 -------------VSRGVEPEVDK-------------YLFLFLKFVASVIPTIEYDYT 309
                        V+ G  P+V+K             YL +FLKF+AS++PTIE D T
Sbjct: 323 KKKKWGLGSMVRKVTGGSVPKVEKDKDEVVTGVPVDFYLVIFLKFIASIVPTIEVDST 380

Putative E2-like conjugating enzyme involved in autophagy and for the cytoplasm to vacuole transport (Cvt).

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
297797109	313	autophagy 3 [Arabidopsis lyrata subsp. l	0.978	0.996	0.820	1e-152
18424474	313	autophagy-related protein 3 [Arabidopsis	0.978	0.996	0.814	1e-151
110740691	313	autophagocytosis protein - like [Arabido	0.978	0.996	0.811	1e-150
21595613	313	autophagocytosis protein-like [Arabidops	0.978	0.996	0.811	1e-150
224071495	315	predicted protein [Populus trichocarpa]	0.981	0.993	0.819	1e-149
9758466	334	autophagocytosis protein AUT1-like [Arab	0.965	0.922	0.812	1e-148
224138464	315	predicted protein [Populus trichocarpa]	0.984	0.996	0.834	1e-146
255539835	314	conserved hypothetical protein [Ricinus	0.984	1.0	0.821	1e-145
38260612	312	autophagocytosis protein [Sisymbrium iri	0.956	0.977	0.790	1e-143
217072932	310	unknown [Medicago truncatula] gi|3885188	0.971	1.0	0.808	1e-143

>gi|297797109|ref|XP_002866439.1| autophagy 3 [Arabidopsis lyrata subsp. lyrata] gi|297312274|gb|EFH42698.1| autophagy 3 [Arabidopsis lyrata subsp. lyrata]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 261/318 (82%), Positives = 292/318 (91%), Gaps = 6/318 (1%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+PS
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K +
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKGN 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
           EDE  NLPSM+A++I++ N +++I TYFGGEE++  DIPDM E++E D+++EN  DPATL
Sbjct: 121 EDE--NLPSMDALDINEKNTIQSIPTYFGGEEDD--DIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query: 241 HARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASV 300
           HARKTVTIEDHPHL GKHAS+HPCRHGAVMKKIIDVL+SRGVEPEVDKYLFLFLKF+ASV
Sbjct: 235 HARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASV 294

Query: 301 IPTIEYDYTMDFDLGSSS 318
           IPTIEYDYTMDFDLGSSS
Sbjct: 295 IPTIEYDYTMDFDLGSSS 312

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424474|ref|NP_568934.1| autophagy-related protein 3 [Arabidopsis thaliana] gi|147742948|sp|Q0WWQ1.2|ATG3_ARATH RecName: Full=Autophagy-related protein 3; AltName: Full=Autophagy-related E2-like conjugation enzyme ATG3; Short=AtAPG3; Short=Protein autophagy 3 gi|19912141|dbj|BAB88382.1| autophagy 3 [Arabidopsis thaliana] gi|89000923|gb|ABD59051.1| At5g61500 [Arabidopsis thaliana] gi|332010093|gb|AED97476.1| autophagy-related protein 3 [Arabidopsis thaliana]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 259/318 (81%), Positives = 290/318 (91%), Gaps = 6/318 (1%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKGK 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
           E+  DNLPSM+A++I++ N +++I TYFGGEE++  DIPDM E++E D+++EN  DPATL
Sbjct: 121 EE--DNLPSMDALDINEKNTIQSIPTYFGGEEDD--DIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query: 241 HARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASV 300
           HARKTVTIEDHPHL GKHAS+HPCRHGAVMKKIIDVL+SRGVEPEVDKYLFLFLKF+ASV
Sbjct: 235 HARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASV 294

Query: 301 IPTIEYDYTMDFDLGSSS 318
           IPTIEYDYTMDFDLGSSS
Sbjct: 295 IPTIEYDYTMDFDLGSSS 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110740691|dbj|BAE98447.1| autophagocytosis protein - like [Arabidopsis thaliana]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 258/318 (81%), Positives = 290/318 (91%), Gaps = 6/318 (1%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKGK 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
           E+  DNLPSM+A++I++ N +++I TYFGGEE++  DIPDM E++E D+++EN  DPATL
Sbjct: 121 EE--DNLPSMDALDINEKNTIQSIPTYFGGEEDD--DIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYLVAHEPDDDNILRTRTYD+SITYD+YYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDEYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query: 241 HARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASV 300
           HARKTVTIEDHPHL GKHAS+HPCRHGAVMKKIIDVL+SRGVEPEVDKYLFLFLKF+ASV
Sbjct: 235 HARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASV 294

Query: 301 IPTIEYDYTMDFDLGSSS 318
           IPTIEYDYTMDFDLGSSS
Sbjct: 295 IPTIEYDYTMDFDLGSSS 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21595613|gb|AAM66117.1| autophagocytosis protein-like [Arabidopsis thaliana]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 258/318 (81%), Positives = 289/318 (90%), Gaps = 6/318 (1%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVS FVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSXFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKGK 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
           E+  DNLPSM+A++I++ N +++I TYFGGEE++  DIPDM E++E D+++EN  DPATL
Sbjct: 121 EE--DNLPSMDALDINEKNTIQSIPTYFGGEEDD--DIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query: 241 HARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASV 300
           HARKTVTIEDHPHL GKHAS+HPCRHGAVMKKIIDVL+SRGVEPEVDKYLFLFLKF+ASV
Sbjct: 235 HARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASV 294

Query: 301 IPTIEYDYTMDFDLGSSS 318
           IPTIEYDYTMDFDLGSSS
Sbjct: 295 IPTIEYDYTMDFDLGSSS 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071495|ref|XP_002303487.1| predicted protein [Populus trichocarpa] gi|222840919|gb|EEE78466.1| predicted protein [Populus trichocarpa]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/321 (81%), Positives = 291/321 (90%), Gaps = 8/321 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RTVSAFKEKGVLSVSEF+LAGDNLVSKCPTWSWESGEPS
Sbjct: 1   MVLSQKIHEAFKGTVERITGPRTVSAFKEKGVLSVSEFILAGDNLVSKCPTWSWESGEPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLPA+KQFLITRNVPCLRRAASVEE+YE AGGE+L+DNEDNDGWLATHGKPK +  
Sbjct: 61  KRKPYLPAEKQFLITRNVPCLRRAASVEEDYEAAGGEVLLDNEDNDGWLATHGKPK-ETK 119

Query: 121 EDEDDNLPSMEAVEIS-KNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPAT 179
            DED+N+PSMEA++IS K   ++   +YFGGEEE   DIPDMA++ +PD++IE  +DPAT
Sbjct: 120 GDEDENVPSMEALDISVKRIPIQTNPSYFGGEEE---DIPDMADFEDPDNLIE--SDPAT 174

Query: 180 LPSTYLVAHEPDDD-NILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVS 238
           L +TYLVAHEPDDD NILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL+LEDVS
Sbjct: 175 LQTTYLVAHEPDDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRMLLEPELVLEDVS 234

Query: 239 QDHARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVA 298
           QDHARKTVTIEDHPHL GKHAS+HPCRHGAVMKKIIDVL+SRGVEPEVDKYLFLFLKFVA
Sbjct: 235 QDHARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFVA 294

Query: 299 SVIPTIEYDYTMDFDLGSSSN 319
           SVIPTIEYDYTMDFDLGSSS+
Sbjct: 295 SVIPTIEYDYTMDFDLGSSSS 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758466|dbj|BAB08995.1| autophagocytosis protein AUT1-like [Arabidopsis thaliana]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/314 (81%), Positives = 286/314 (91%), Gaps = 6/314 (1%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKGK 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
           E+  DNLPSM+A++I++ N +++I TYFGGEE++  DIPDM E++E D+++EN  DPATL
Sbjct: 121 EE--DNLPSMDALDINEKNTIQSIPTYFGGEEDD--DIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query: 241 HARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASV 300
           HARKTVTIEDHPHL GKHAS+HPCRHGAVMKKIIDVL+SRGVEPEVDKYLFLFLKF+ASV
Sbjct: 235 HARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASV 294

Query: 301 IPTIEYDYTMDFDL 314
           IPTIEYDYTMDFDL
Sbjct: 295 IPTIEYDYTMDFDL 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138464|ref|XP_002326609.1| predicted protein [Populus trichocarpa] gi|222833931|gb|EEE72408.1| predicted protein [Populus trichocarpa]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/320 (83%), Positives = 294/320 (91%), Gaps = 6/320 (1%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RTVSAFKEKGVLSVSEF+LAGDNLVSKCPTWSWESGEPS
Sbjct: 1   MVLSQKIHEAFKGTVERITGPRTVSAFKEKGVLSVSEFILAGDNLVSKCPTWSWESGEPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRKSYLPA+KQFLITRNVPCLRRAASVEEEYE AGGE+L+DNEDNDGWLATHGKPK +  
Sbjct: 61  KRKSYLPAEKQFLITRNVPCLRRAASVEEEYEAAGGEVLLDNEDNDGWLATHGKPK-ETK 119

Query: 121 EDEDDNLPSMEAVEIS-KNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPAT 179
            DED+N+PSMEA+EIS K + ++   +YFGGEEEE  DIPDMA++ +PD++IE  +DPAT
Sbjct: 120 GDEDENVPSMEALEISAKKSLIQTNHSYFGGEEEE--DIPDMADFEDPDNLIE--SDPAT 175

Query: 180 LPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQ 239
           L +TYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL+LEDVSQ
Sbjct: 176 LQTTYLVAHEPDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRMLLQPELVLEDVSQ 235

Query: 240 DHARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVAS 299
           DHARKTVTIEDHPHL GKHAS+HPCRHGAVMKKIIDVL+SRGVEPEVDKYLFLFLKFVAS
Sbjct: 236 DHARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFVAS 295

Query: 300 VIPTIEYDYTMDFDLGSSSN 319
           VIPTIEYDYTMDFDLGSSS+
Sbjct: 296 VIPTIEYDYTMDFDLGSSSS 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539835|ref|XP_002510982.1| conserved hypothetical protein [Ricinus communis] gi|223550097|gb|EEF51584.1| conserved hypothetical protein [Ricinus communis]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/319 (82%), Positives = 290/319 (90%), Gaps = 5/319 (1%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RTVSAFKEKGVLSVSEF+LAGDNLV+KCPTWSWESGEPS
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTVSAFKEKGVLSVSEFILAGDNLVAKCPTWSWESGEPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KR SYLP +KQFLITRNVPCLRRAASVEEEYE AGGE+L+DNEDNDGWLATHGKPK    
Sbjct: 61  KRMSYLPPEKQFLITRNVPCLRRAASVEEEYEAAGGEVLLDNEDNDGWLATHGKPKESTG 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
            DED+N+PS+EA+EISK + + +I +YFGG+EEE  DIPDM +Y +P+++IE  +DPATL
Sbjct: 121 -DEDENVPSLEALEISKKSPIHSIPSYFGGKEEE--DIPDMDDYEDPNNLIE--SDPATL 175

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            STYL+AHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL+LEDVSQD
Sbjct: 176 QSTYLIAHEPDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRMLLQPELVLEDVSQD 235

Query: 241 HARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASV 300
           HARKTVTIEDHPHL GKHAS+HPCRHGAVMKKIIDVL+SRGVEPEV KYLFLFLKFVASV
Sbjct: 236 HARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVHKYLFLFLKFVASV 295

Query: 301 IPTIEYDYTMDFDLGSSSN 319
           IPTIEYDYTMDFDLGSSSN
Sbjct: 296 IPTIEYDYTMDFDLGSSSN 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260612|gb|AAR15430.1| autophagocytosis protein [Sisymbrium irio]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 249/315 (79%), Positives = 279/315 (88%), Gaps = 10/315 (3%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +G FKG VE++T  RTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+PS
Sbjct: 1   MVLSQKIHGAFKGAVERMTGPRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHG+PK + +
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGRPKDRGN 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
           EDE  NLPSM+A+EI++ + ++    Y GGEEE+  DIPDMAE++E D+      DPATL
Sbjct: 121 EDE--NLPSMDALEINERDTIQPKPKYAGGEEED--DIPDMAEFDEIDN------DPATL 170

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
            S  LVAH+ DDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct: 171 QSNLLVAHQQDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 230

Query: 241 HARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASV 300
           HARKTVTIEDHPHL GKHAS+HPCRHGAVMKKIIDVL+SRGVEPEVDKYLFLFLKF+ASV
Sbjct: 231 HARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASV 290

Query: 301 IPTIEYDYTMDFDLG 315
           IPTIEYDYTMDFDLG
Sbjct: 291 IPTIEYDYTMDFDLG 305

Source: Sisymbrium irio

Species: Sisymbrium irio

Genus: Sisymbrium

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072932|gb|ACJ84826.1| unknown [Medicago truncatula] gi|388518803|gb|AFK47463.1| unknown [Medicago truncatula]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/319 (80%), Positives = 290/319 (90%), Gaps = 9/319 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT HRTVSAFKEKGVLSVSEF++AGDNLV+KCPTWSWESGEPS
Sbjct: 1   MVLSQKLHEAFKGTVERITGHRTVSAFKEKGVLSVSEFIIAGDNLVAKCPTWSWESGEPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRKSYLP++KQFLITRNVPCLRRAAS+EEEYE AGGE+L+D+E+NDGWLATHGKPK +  
Sbjct: 61  KRKSYLPSEKQFLITRNVPCLRRAASIEEEYEAAGGEVLLDDEENDGWLATHGKPK-ETK 119

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
            DE++NLPSME++EIS+ ++V+  S++ GGE++E  DIPDM E+ E D+IIE +      
Sbjct: 120 SDEEENLPSMESLEISEKSSVKQTSSHTGGEDDE--DIPDMEEFKEYDNIIETD------ 171

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
           PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLL+ EL+LEDVSQD
Sbjct: 172 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLQPELVLEDVSQD 231

Query: 241 HARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASV 300
           HARKTVTIEDHPHL GKHASIHPCRHGAVMKKIIDVL+SRGVEPEVDKYLFLFLKF+ASV
Sbjct: 232 HARKTVTIEDHPHLPGKHASIHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASV 291

Query: 301 IPTIEYDYTMDFDLGSSSN 319
           IPTIEYDYTMDFDLGSSSN
Sbjct: 292 IPTIEYDYTMDFDLGSSSN 310

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
TAIR|locus:2151566	313	ATG3 "AT5G61500" [Arabidopsis	0.978	0.996	0.808	3.5e-139
DICTYBASE|DDB_G0277319	338	atg3 "autophagy protein 3" [Di	0.485	0.458	0.598	2.2e-78
UNIPROTKB|E1C502	313	ATG3 "Autophagy-related protei	0.902	0.920	0.467	1.1e-62
ZFIN|ZDB-GENE-030131-8576	317	apg3l "APG3 autophagy 3-like"	0.934	0.940	0.452	3.8e-62
MGI|MGI:1915091	314	Atg3 "autophagy related 3" [Mu	0.909	0.923	0.456	1e-61
UNIPROTKB|Q6GQE7	313	atg3 "Ubiquitin-like-conjugati	0.937	0.955	0.439	2.7e-61
UNIPROTKB|Q0VCL3	314	ATG3 "Ubiquitin-like-conjugati	0.902	0.917	0.459	3.4e-61
UNIPROTKB|F1SLS7	314	ATG3 "Autophagy-related protei	0.902	0.917	0.459	5.5e-61
UNIPROTKB|F1PJ26	312	ATG3 "Autophagy-related protei	0.909	0.929	0.452	7.1e-61
RGD|708464	314	Atg3 "autophagy related 3" [Ra	0.902	0.917	0.456	7.1e-61

TAIR|locus:2151566 ATG3 "AT5G61500" [Arabidopsis thaliana (taxid:3702)]

 Score = 1362 (484.5 bits), Expect = 3.5e-139, P = 3.5e-139
 Identities = 257/318 (80%), Positives = 286/318 (89%)

Query:     1 MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
             M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct:     1 MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query:    61 KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
             KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct:    61 KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDK-- 118

Query:   121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATL 180
               E+DNLPSM+A++I++ N +++I TYFGG      DIPDM E++E D+++EN  DPATL
Sbjct:   119 GKEEDNLPSMDALDINEKNTIQSIPTYFGGEEDD--DIPDMEEFDEADNVVEN--DPATL 174

Query:   181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD 240
              STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQD
Sbjct:   175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQD 234

Query:   241 HARKTVTIEDHPHLTGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASV 300
             HARKTVTIEDHPHL GKHAS+HPCRHGAVMKKIIDVL+SRGVEPEVDKYLFLFLKF+ASV
Sbjct:   235 HARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASV 294

Query:   301 IPTIEYDYTMDFDLGSSS 318
             IPTIEYDYTMDFDLGSSS
Sbjct:   295 IPTIEYDYTMDFDLGSSS 312

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

DICTYBASE|DDB_G0277319 atg3 "autophagy protein 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 498 (180.4 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
 Identities = 103/172 (59%), Positives = 123/172 (71%)

Query:   157 DIPDMAEYNEPDSIIENETDPATLP-----STYLVAHE----------PDDDNILRTRTY 201
             DIPD+ ++ + D+IIE E DPA L      +T   A+            D+DNILRTRTY
Sbjct:   168 DIPDLDDFQD-DNIIEEE-DPAVLSKNNKTTTTTTANNNNNNNSENKVEDNDNILRTRTY 225

Query:   202 DISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASI 261
             DISITYDKYYQTPRVWL GYDE+R  LK E I ED+S+DHA KTVTI+ HPHL    A I
Sbjct:   226 DISITYDKYYQTPRVWLFGYDENRKPLKPEEIFEDISEDHAHKTVTIDSHPHLGISFAYI 285

Query:   262 HPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFD 313
             HPCRH AVMKK++D     G EP VD+YLFLFLKF++ VIPTIEYD+T++FD
Sbjct:   286 HPCRHAAVMKKLVDRQSENGKEPRVDQYLFLFLKFISVVIPTIEYDFTLEFD 337

GO:0015031 "protein transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1C502 ATG3 "Autophagy-related protein 3" [Gallus gallus (taxid:9031)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 144/308 (46%), Positives = 184/308 (59%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W SGE  K K+YLP DKQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWASGEELKVKAYLPTDKQFLVT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDED-EDDNLPSMEA 132
             +NVPC +R   +E   E    E +++ +D DG W+ T H        E  ++  L S + 
Sbjct:    77 KNVPCYKRCKQMEYSDEQ---EAIIEEDDGDGGWVDTFHNAGIVGATEAVKEITLDSKDN 133

Query:   133 VEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPD- 191
             ++I +    R+ S           +  DM EY E   +   ETD ATL +  +V  +   
Sbjct:   134 IKIPE----RSASCE-DDDDEDEGEAADMEEYEESGLL---ETDDATLDTRQIVEVKAKV 185

Query:   192 ----DDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVT 247
                 +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTVT
Sbjct:   186 DVGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVT 245

Query:   248 IEDHPHLTGKH-ASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEY 306
             IE+HPHL      S+HPCRH  VMKKII+ +   G E  V  YL +FLKFV +VIPTIEY
Sbjct:   246 IENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEY 305

Query:   307 DYTMDFDL 314
             DYT  F +
Sbjct:   306 DYTRHFTM 313

GO:0015031 "protein transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019776 "Atg8 ligase activity" evidence=IEA

GO:0019777 "Atg12 ligase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

ZFIN|ZDB-GENE-030131-8576 apg3l "APG3 autophagy 3-like" [Danio rerio (taxid:7955)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 143/316 (45%), Positives = 183/316 (57%)

Query:     9 GIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPA 68
             G   G  E +T     S FKE GV++  EFV AGD+LV  CPTW W SGE +K K YLP 
Sbjct:    10 GTALGVAEFLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWKWASGEEAKVKPYLPN 69

Query:    69 DKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDED-EDD 125
             DKQFL+TRNVPC +R   +E   E    E +++ +D DG W+ T H        E   + 
Sbjct:    70 DKQFLLTRNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTFHNSGVTGVTEAVREI 126

Query:   126 NLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYL 185
             +L + +   ++ N    A             +  DM EY E   +   ETD ATL ++ +
Sbjct:   127 SLDNKD--NMNMNVKTGACGNSGDDDDDEEGEAADMEEYEESGLL---ETDDATLDTSKM 181

Query:   186 V------AHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQ 239
                    A    +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  + + ED+SQ
Sbjct:   182 ADLSKTKAEAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEDRQPLTVDQMYEDISQ 241

Query:   240 DHARKTVTIEDHPHLTGKH-ASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVA 298
             DH +KTVTIE+HP+L      S+HPCRH  VMKKII+ +   G E  V  YL +FLKFV 
Sbjct:   242 DHVKKTVTIENHPNLPPPAMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQ 301

Query:   299 SVIPTIEYDYTMDFDL 314
             +VIPTIEYDYT  F +
Sbjct:   302 AVIPTIEYDYTRHFTM 317

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

MGI|MGI:1915091 Atg3 "autophagy related 3" [Mus musculus (taxid:10090)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 140/307 (45%), Positives = 182/307 (59%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP DKQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTDKQFLVT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLATHGKPKAKCDEDEDDNLPSMEAVE 134
             +NVPC +R   +E   E    E +++ +D DG W+ T+         +    + ++E+ +
Sbjct:    77 KNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTYHNTGITGITEAVKEI-TLESKD 132

Query:   135 ISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV------AH 188
               K  +  A+            +  DM EY E   +   ETD ATL +  +V      A 
Sbjct:   133 SIKLQDCSALCDE--EDEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKAD 187

Query:   189 EPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTI 248
                +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTVTI
Sbjct:   188 AGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTI 247

Query:   249 EDHPHLTGKH-ASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYD 307
             E+HPHL      S+HPCRH  VMKKII+ +   G E  V  YL +FLKFV +VIPTIEYD
Sbjct:   248 ENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYD 307

Query:   308 YTMDFDL 314
             YT  F +
Sbjct:   308 YTRHFTM 314

GO:0000045 "autophagic vacuole assembly" evidence=IMP

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0019776 "Atg8 ligase activity" evidence=IMP

GO:0019777 "Atg12 ligase activity" evidence=IDA

GO:0019787 "small conjugating protein ligase activity" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IMP

UNIPROTKB|Q6GQE7 atg3 "Ubiquitin-like-conjugating enzyme ATG3" [Xenopus laevis (taxid:8355)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 142/323 (43%), Positives = 190/323 (58%)

Query:     5 QKFYGIFKGTVEKITSHRTV----SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
             Q  +   KG   ++  + T     S FKE GV++  EF+ AGD+LV  CPTW W +GE S
Sbjct:     2 QNVFNTVKGKALEVAEYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEES 61

Query:    61 KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAK 118
             K K YLP DKQFL+T+NVPC +R   +E   E    E +++ +D DG W+ T H    + 
Sbjct:    62 KIKPYLPNDKQFLMTKNVPCYKRCKQMEYSDEQ---EAIIEEDDGDGGWVDTFHHTGLSG 118

Query:   119 CDEDEDDNLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPA 178
               E   +   ++E  +  K  +  A+            +  DM +Y E   ++EN  D A
Sbjct:   119 VTEAVKEI--TLETQDCGKTTDNIAVCD---DDDDDEGEAADMEDYEE-SGLLEN--DDA 170

Query:   179 TLPSTYLV-AHEPD-----DDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTEL 232
             T+ ++ +  A +P      +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E 
Sbjct:   171 TVDTSKIKEACKPKADLGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRRPLAVEN 230

Query:   233 ILEDVSQDHARKTVTIEDHPHLTGKH-ASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLF 291
             + ED+SQDH +KTVTIE+HPHL      S+HPCRH  VMKKII+ +   G E  V  YL 
Sbjct:   231 MYEDISQDHVKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLL 290

Query:   292 LFLKFVASVIPTIEYDYTMDFDL 314
             +FLKFV +VIPTIEYDYT  F +
Sbjct:   291 IFLKFVQAVIPTIEYDYTRHFTM 313

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

UNIPROTKB|Q0VCL3 ATG3 "Ubiquitin-like-conjugating enzyme ATG3" [Bos taurus (taxid:9913)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 142/309 (45%), Positives = 186/309 (60%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP+ KQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPSGKQFLVT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDED-EDDNLPSMEA 132
             +NVPC +R   +E   E    E +++ +D DG W+ T H    A   E  ++  L S ++
Sbjct:    77 KNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTYHNTGIAGITEAVKEITLESKDS 133

Query:   133 VEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAH---E 189
             +++    +  A+            +  DM EY E   +   ETD ATL +  +V     +
Sbjct:   134 IKLQ---DCSALCEE--EEEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAK 185

Query:   190 PD---DDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTV 246
              D   +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTV
Sbjct:   186 TDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTV 245

Query:   247 TIEDHPHLTGKH-ASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIE 305
             TIE+HPHL      S+HPCRH  VMKKII+ +   G E  V  YL +FLKFV +VIPTIE
Sbjct:   246 TIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIE 305

Query:   306 YDYTMDFDL 314
             YDYT  F +
Sbjct:   306 YDYTRHFTM 314

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0019899 "enzyme binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1SLS7 ATG3 "Autophagy-related protein 3" [Sus scrofa (taxid:9823)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 142/309 (45%), Positives = 184/309 (59%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDED-EDDNLPSMEA 132
             +NVPC +R   +E   E    E +++ +D DG W+ T H    A   E  ++  L S + 
Sbjct:    77 KNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTYHNTGIAGITEAVKEITLESKDG 133

Query:   133 VEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAH---E 189
             +++    +  A+            +  DM EY E   +   ETD ATL +  +V     +
Sbjct:   134 IKLQ---DCSALCEE--EEEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAK 185

Query:   190 PD---DDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTV 246
              D   +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTV
Sbjct:   186 TDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTV 245

Query:   247 TIEDHPHLTGKH-ASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIE 305
             TIE+HPHL      S+HPCRH  VMKKII+ +   G E  V  YL +FLKFV +VIPTIE
Sbjct:   246 TIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIE 305

Query:   306 YDYTMDFDL 314
             YDYT  F +
Sbjct:   306 YDYTRHFTM 314

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0019777 "Atg12 ligase activity" evidence=IEA

GO:0019776 "Atg8 ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1PJ26 ATG3 "Autophagy-related protein 3" [Canis lupus familiaris (taxid:9615)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 139/307 (45%), Positives = 182/307 (59%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T
Sbjct:    15 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVT 74

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLATHGKPKAKCDEDEDDNLPSMEAVE 134
             +NVPC +R   +E   E    E +++ +D DG W+ T+         +    + ++E+ +
Sbjct:    75 KNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTYHNAGVTGITEAVKEI-TLESKD 130

Query:   135 ISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAH---EPD 191
               K  +  A+            +  DM EY E   +   ETD ATL +  +V     + D
Sbjct:   131 SIKLQDCSAVCEE--EEEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKTD 185

Query:   192 ---DDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTI 248
                +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTVTI
Sbjct:   186 AGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTI 245

Query:   249 EDHPHLTGKH-ASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYD 307
             E+HPHL      S+HPCRH  VMKKII+ +   G E  V  YL +FLKFV +VIPTIEYD
Sbjct:   246 ENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYD 305

Query:   308 YTMDFDL 314
             YT  F +
Sbjct:   306 YTRHFTM 312

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

RGD|708464 Atg3 "autophagy related 3" [Rattus norvegicus (taxid:10116)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 141/309 (45%), Positives = 184/309 (59%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDED-EDDNLPSMEA 132
             +NVPC +R   +E   E    E +++ +D DG W+ T H        E  ++  L S ++
Sbjct:    77 KNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTYHNTGITGITEAVKEITLESKDS 133

Query:   133 VEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV------ 186
             +++ ++ +V               +  DM EY E   +   ETD ATL +  +V      
Sbjct:   134 IKL-QDCSVLCDEE----EEEEEGEAADMEEYEESGLL---ETDEATLDTRRIVEACKAK 185

Query:   187 AHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTV 246
             A    +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE R  L  E + ED+SQDH +KTV
Sbjct:   186 ADAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTV 245

Query:   247 TIEDHPHLTGKH-ASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIE 305
             TIE+HPHL      S+HPCRH  VMKKII+ +   G E  V  YL +FLKFV +VIPTIE
Sbjct:   246 TIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIE 305

Query:   306 YDYTMDFDL 314
             YDYT  F +
Sbjct:   306 YDYTRHFTM 314

GO:0000045 "autophagic vacuole assembly" evidence=ISO;ISS

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0006914 "autophagy" evidence=IEP

GO:0015031 "protein transport" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISO

GO:0019776 "Atg8 ligase activity" evidence=ISO;ISS

GO:0019777 "Atg12 ligase activity" evidence=ISO;ISS

GO:0019787 "small conjugating protein ligase activity" evidence=ISO

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O43035	ATG3_SCHPO	No assigned EC number	0.3533	0.8275	0.96	yes	no
Q550A8	ATG3_DICDI	No assigned EC number	0.4658	0.9623	0.9082	yes	no
Q0WWQ1	ATG3_ARATH	No assigned EC number	0.8144	0.9780	0.9968	yes	no
Q5I0S6	ATG3_XENTR	6, ., 3, ., 2, ., -	0.4505	0.8902	0.9102	yes	no
Q0VCL3	ATG3_BOVIN	6, ., 3, ., 2, ., -	0.4782	0.8777	0.8917	yes	no
Q9NT62	ATG3_HUMAN	6, ., 3, ., 2, ., -	0.4584	0.8714	0.8853	yes	no
Q6PFS7	ATG3_DANRE	6, ., 3, ., 2, ., -	0.4598	0.9090	0.9148	yes	no
Q9CPX6	ATG3_MOUSE	6, ., 3, ., 2, ., -	0.4680	0.8840	0.8980	yes	no
Q6AZ50	ATG3_RAT	6, ., 3, ., 2, ., -	0.4615	0.8777	0.8917	yes	no
Q6CL19	ATG3_KLULA	No assigned EC number	0.3079	0.8087	0.8543	yes	no
P40344	ATG3_YEAST	No assigned EC number	0.3081	0.8087	0.8322	yes	no
Q6BSC4	ATG3_DEBHA	No assigned EC number	0.3234	0.8495	0.8364	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.8__2125__AT5G61500.1	annotation not avaliable (313 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_800258.1	annotation not avaliable (697 aa)				•	•	•	•		0.942
	fgenesh1_pm.C_scaffold_1003508	annotation not avaliable (96 aa)					•		•		0.566
	fgenesh1_pm.C_scaffold_3001200	annotation not avaliable (94 aa)					•		•		0.549

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	319
pfam03986	146	pfam03986, Autophagy_N, Autophagocytosis associate	5e-48
pfam03987	62	pfam03987, Autophagy_act_C, Autophagocytosis assoc	2e-27
pfam10381	25	pfam10381, Autophagy_Cterm, Autophagocytosis assoc	1e-11

>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3), N-terminal domain

 Score =  157 bits (399), Expect = 5e-48
 Identities = 61/155 (39%), Positives = 90/155 (58%), Gaps = 10/155 (6%)

Query: 6   KFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSY 65
             +       E +T     S F+E GV++  EFV AGD LV K PTWSW +G+PSK + Y
Sbjct: 1   SLHSALSSVREYLTPVLKTSKFRETGVITPEEFVAAGDYLVHKFPTWSWAAGDPSKIRPY 60

Query: 66  LPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKP-KAKCDEDED 124
           LP DKQFL+TRNVPC RRA  +E        EI+ D +++DGW+ THG   K K D  ++
Sbjct: 61  LPPDKQFLVTRNVPCYRRAKQMEYGDGAE--EIVEDEDEDDGWVTTHGNRDKQKDDIADE 118

Query: 125 DNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIP 159
           +++P +   +    ++  A       +E++++DIP
Sbjct: 119 EDIPEIGDDDDDVVDSSDA-------DEDDDDDIP 146

Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme. It catalyzes the conjugation of Atg8 and phosphatidylethanolamine. Length = 146

>gnl|CDD|202841 pfam03987, Autophagy_act_C, Autophagocytosis associated protein, active-site domain

 Score =  101 bits (254), Expect = 2e-27
 Identities = 32/62 (51%), Positives = 40/62 (64%)

Query: 204 SITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHP 263
            ITYDK YQ PR++L GYDE    L  E + ED+  D+  KTVT+E+HP L     SIHP
Sbjct: 1   YITYDKSYQVPRLYLRGYDEDGKPLSPEEMFEDIVPDYRDKTVTLEEHPFLGIPWYSIHP 60

Query: 264 CR 265
           C+
Sbjct: 61  CK 62

Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex. Length = 62

>gnl|CDD|150967 pfam10381, Autophagy_Cterm, Autophagocytosis associated protein C-terminal

 Score = 58.3 bits (142), Expect = 1e-11
 Identities = 21/25 (84%), Positives = 24/25 (96%)

Query: 286 VDKYLFLFLKFVASVIPTIEYDYTM 310
           VD+YLF+FLKF+ASVIPTIEYDYT 
Sbjct: 1   VDQYLFIFLKFIASVIPTIEYDYTT 25

Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The small C-terminal domain is likely to be a distinct binding region for the stability of the autophagosome complex. It carries a highly characteristic conserved FLKF sequence motif. Length = 25

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
KOG2981	295	consensus Protein involved in autophagocytosis dur	100.0
PF03986	145	Autophagy_N: Autophagocytosis associated protein (	100.0
PF03987	62	Autophagy_act_C: Autophagocytosis associated prote	99.91
KOG4741	173	consensus Uncharacterized conserved protein [Funct	99.73
PF10381	25	Autophagy_Cterm: Autophagocytosis associated prote	99.53

>KOG2981 consensus Protein involved in autophagocytosis during starvation [General function prediction only]

Probab=100.00  E-value=7.1e-117  Score=814.96  Aligned_cols=294  Identities=51%  Similarity=0.822  Sum_probs=249.2

Q ss_pred             ChhHHHHHHHHhhhhhhcccCCCcCccccccccChHHHHHhcccccccCCccccCCCCCCCCCCCCCCCCeeEEeCCCcc
Q 020931            1 MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPC   80 (319)
Q Consensus         1 ~~~~~~~~s~~~~~~e~ltpv~~~S~F~etG~LTPeEFV~AGD~LV~k~PTW~W~~g~~~k~r~yLP~dKQfLvTRnVPC   80 (319)
                      +|+-++|+|+|++||||||||+|+|+|++||+|||||||+||||||||||||||++|+++|+|+|||+||||||||||||
T Consensus         1 q~~~n~l~sa~l~~~E~lTpv~k~S~F~etGvitpeEFV~AGD~Lvh~cPTW~W~~gd~~k~r~fLPkdKQfLItRnVpC   80 (295)
T KOG2981|consen    1 QNLANTLKSAALNWREYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWSWAEGDESKIRPFLPKDKQFLITRNVPC   80 (295)
T ss_pred             CcHHHHHHHHHHhHHHhcccccchhhhhhcCccCHHHHHhccchhhhcCCccccccCCcccccccCCCCceEEEeccChH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhccCCcccccCCCCCceeecCCCCCCCCCCCccCCCCCchhhhhhcccccccccCCCCCCCCCcCCccC
Q 020931           81 LRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPD  160 (319)
Q Consensus        81 ~~R~~~~~~e~~~~~~~~~~~~~~ddgWv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D  160 (319)
                      +|||++|  +|..+.+.++. +++++|||+||......      +.+...+....   ....+.+   +..+++++|++|
T Consensus        81 ~kR~~q~--~~~ee~e~iv~-~Edg~gwvdT~~~ed~l------e~~~~e~ih~~---~t~~~~~---e~~~edddE~~d  145 (295)
T KOG2981|consen   81 YKRCKQM--EYVEELEVIVD-EEDGGGWVDTHNEEDTL------EYIGKETIHSQ---DTPAAAP---ESSDEDDDELID  145 (295)
T ss_pred             HHHHhhh--hcccccceEEe-ccCCCccccccchhhcc------cccchhhcccC---CCCcCCc---cccccccccccc
Confidence            9999999  56766555554 45558999999643211      11110000000   0011111   236678899999


Q ss_pred             cccCCCCCCCccCCCCCCCCCCcccccCCCCCCCcceeEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHHHHhhhhh
Q 020931          161 MAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQD  240 (319)
Q Consensus       161 m~~~~~~~~l~~~edD~~~~~~~~~~~~~~~~~~i~~~rtYD~~ItYs~~YqvPrLyl~gy~~~g~PLt~ee~~eDi~~d  240 (319)
                      |++++++|++    +|++.++.. ......++++|+++|||||||+||+|||||||||+||+++|+||++++||||||+|
T Consensus       146 ~~e~~e~d~~----edp~~~~s~-~~~~~~dd~gil~tRtYDL~I~YdkyYqtPRl~l~Gyde~r~pLt~E~myEDvS~D  220 (295)
T KOG2981|consen  146 MEELEESDEE----EDPATFVSK-AVAGLADDSGILQTRTYDLYITYDKYYQTPRLWLVGYDENRQPLTVEQMYEDVSQD  220 (295)
T ss_pred             cccccccccc----cCHHHHhhh-hccccccccccceeeEEEEEEEeeccccCceEEEEEecCCCCcCCHHHHHHHhhhh
Confidence            9999988864    456665442 22333446679999999999999999999999999999999999999999999999


Q ss_pred             ccCcceeccCCCCC-CCCceEEecCCcHHHHHHHHHHHHhCCCCCccchhHHHHHHHhhhcccceeecccceeec
Q 020931          241 HARKTVTIEDHPHL-TGKHASIHPCRHGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDL  314 (319)
Q Consensus       241 ~~~ktVT~e~HP~l-g~~~~sIHPCkha~vMk~l~~~~~~~~~~~~v~~YL~ifLkFi~sViPTIEyDyT~~~~~  314 (319)
                      |++||||||.|||+ +.+++||||||||+|||+||++++++|.+++|||||++|||||++|||||||||||+|.|
T Consensus       221 ha~KTvTiE~hPh~~~~~m~SVHPCkHa~vMkklI~~~~e~g~~l~Vd~YL~lFLKFv~sViPtiEyDYT~~~~l  295 (295)
T KOG2981|consen  221 HAKKTVTIEKHPHLPGPNMASVHPCKHAEVMKKLIDQVRERGDELGVDQYLILFLKFVQSVIPTIEYDYTMEFWL  295 (295)
T ss_pred             hccCeEEeccCCCCCCCCccccccchhHHHHHHHHHHHHhcCCCcceehhHHHHHHHHHhhccceEeeeeeeccC
Confidence            99999999999999 556999999999999999999999999999999999999999999999999999999875

>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes

Probab=100.00  E-value=3.8e-56  Score=385.98  Aligned_cols=108  Identities=52%  Similarity=0.924  Sum_probs=43.8

Q ss_pred             HHHHHhhhhhhcccCCCcCccccccccChHHHHHhcccccccCCccccCCCCCCCCCCCCCCCCeeEEeCCCcchhhhhh
Q 020931            7 FYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAAS   86 (319)
Q Consensus         7 ~~s~~~~~~e~ltpv~~~S~F~etG~LTPeEFV~AGD~LV~k~PTW~W~~g~~~k~r~yLP~dKQfLvTRnVPC~~R~~~   86 (319)
                      |+++|++||||||||+|+|+|++||+|||||||+||||||||||||||++|+++++|+|||+||||||||||||++||++
T Consensus         2 l~s~~~~~~e~ltPv~~~S~F~etG~iTPeEFV~AGD~LV~k~PTW~W~~g~~~k~k~yLP~dKQfLvtRnVPC~~R~~~   81 (145)
T PF03986_consen    2 LRSTFSSVREYLTPVLHESKFKETGVITPEEFVAAGDYLVHKFPTWQWSAGDPSKRKDYLPKDKQFLVTRNVPCYRRAKD   81 (145)
T ss_dssp             --------------------HHHHS---HHHHHHHHHHHHHH-TT-EE---TTB---TTS-TT-S-EEEEEEEE-S-TTT
T ss_pred             hHHHHHHHHHHhcCCCCcccccccceeCHHHHHHhhhHHHhhCCcceeccCCccccCCCCCCCCeEEEecCcccHHhhhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCcccccCCCCCceeecCCCCC
Q 020931           87 VEEEYEGAGGEILVDNEDNDGWLATHGKPK  116 (319)
Q Consensus        87 ~~~e~~~~~~~~~~~~~~ddgWv~t~~~~~  116 (319)
                      +.  +....+.+++++++++|||.||+...
T Consensus        82 ~~--~~~~~e~~~~~~~~ddgWv~t~~~~~  109 (145)
T PF03986_consen   82 ME--YSEEDEEIVEDDDDDDGWVDTHHNQT  109 (145)
T ss_dssp             ------------------------------
T ss_pred             cc--ccccccceeccCCCCCCeEccCCccc
Confidence            94  45555667777788999999998643

Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.

>PF03987 Autophagy_act_C: Autophagocytosis associated protein, active-site domain ; InterPro: IPR007135 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes

Probab=99.91  E-value=3.1e-25  Score=166.63  Aligned_cols=62  Identities=45%  Similarity=0.697  Sum_probs=52.3

Q ss_pred             EEEEeCCCCCceeEEeeecCCCCCCCHHHHHHhhhhhccCcceeccCCCCCCCCceEEecCC
Q 020931          204 SITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCR  265 (319)
Q Consensus       204 ~ItYs~~YqvPrLyl~gy~~~g~PLt~ee~~eDi~~d~~~ktVT~e~HP~lg~~~~sIHPCk  265 (319)
                      ||+||++||||+|||+||+++|+||++++|+++++++++.++||+++||++|.|+++||||+
T Consensus         1 ~I~Ys~~YqvP~L~f~~~~~~g~~l~~~~~~~~~~~~~~~~~it~~~HP~l~~p~~~iHPC~   62 (62)
T PF03987_consen    1 HITYSPSYQVPVLYFRGYDEDGSPLSLEEVYEDLSPDSADSTITQEEHPILGIPWYSIHPCD   62 (62)
T ss_dssp             EEEEETTTTEEEEEEEEEETT--B--HHHHHTTS-TTTHHHHEEEEE-TTBSS-EEEE-S-S
T ss_pred             CEEecCccCCCEEEEEEECCCCCCCCHHHHHHhhccccccceeecccCCCCCCceEEEcCCC
Confidence            79999999999999999999999999999999999999999999999999999999999997

Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex [].; PDB: 2DYT_A.

>KOG4741 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=1.4e-18  Score=152.75  Aligned_cols=95  Identities=20%  Similarity=0.404  Sum_probs=81.2

Q ss_pred             eeEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHHHHhhhhhc---cCcceeccCCCCCCCCceEEecCCcHHHHHHH
Q 020931          197 RTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDH---ARKTVTIEDHPHLTGKHASIHPCRHGAVMKKI  273 (319)
Q Consensus       197 ~~rtYD~~ItYs~~YqvPrLyl~gy~~~g~PLt~ee~~eDi~~d~---~~ktVT~e~HP~lg~~~~sIHPCkha~vMk~l  273 (319)
                      ++.+++.||.|+..||+|+|||..|-.+|+||...+|-|..-.+-   -..+||+.+||+||+|++.||||+|+++||.+
T Consensus        61 ~vi~~e~hilyn~kyqvp~lwf~f~~~ngrpl~~r~v~Ei~~t~l~e~~~~~Itq~eHP~Lg~pyy~LHPC~Tse~mke~  140 (173)
T KOG4741|consen   61 QVINREAHFLYNRKYQVPELWFMFYCRNGRPLRVRQVAEILGTKLEENDAIVITQSEHPTLGIPYYKLHPCDTSELMKEI  140 (173)
T ss_pred             HHhhhhheEEEEeeecchhheeehhhcCCCchhhhhhHHhhcCccccCccceeeeccCCcccceeeeecCCcHHHHHhhc
Confidence            556788999999999999999999999999999997777544331   11599999999999999999999999999998


Q ss_pred             HHHHHhCCCCCccchhHHHHHHHhhhcc
Q 020931          274 IDVLVSRGVEPEVDKYLFLFLKFVASVI  301 (319)
Q Consensus       274 ~~~~~~~~~~~~v~~YL~ifLkFi~sVi  301 (319)
                      ..          ..+|++.|++..|.++
T Consensus       141 ~k----------~sNyilswiS~yGp~v  158 (173)
T KOG4741|consen  141 PK----------RSNYILSWISAYGPEV  158 (173)
T ss_pred             CC----------chHHHHHHHHHhCchh
Confidence            63          2399999998887765

>PF10381 Autophagy_Cterm: Autophagocytosis associated protein C-terminal; InterPro: IPR019461 Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole

Probab=99.53  E-value=3.2e-15  Score=93.94  Aligned_cols=25  Identities=80%  Similarity=1.386  Sum_probs=20.5

Q ss_pred             cchhHHHHHHHhhhcccceeecccc
Q 020931          286 VDKYLFLFLKFVASVIPTIEYDYTM  310 (319)
Q Consensus       286 v~~YL~ifLkFi~sViPTIEyDyT~  310 (319)
                      |||||++|||||++|||||||||||
T Consensus         1 vd~yl~iFLKFi~sViPtIeyD~t~   25 (25)
T PF10381_consen    1 VDQYLVIFLKFISSVIPTIEYDYTM   25 (25)
T ss_dssp             GGGHHHHHHHHHHHHSTTB--TT--
T ss_pred             CceeehhHHHHHhhcCCceeeeccC
Confidence            6899999999999999999999997

The small C-terminal domain is likely to be a distinct binding region for the stability of the autophagosome complex []. It carries a highly characteristic conserved FLKF sequence motif. ; PDB: 2DYT_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	319
3vx8_B	292	Crystal Structure Of Arabidopsis Thaliana Atg7ntd-A		1e-143
2dyt_A	312	The Crystal Structure Of Saccharomyces Cerevisiae A		2e-27
4gsl_C	312	Crystal Structure Of An Atg7-Atg3 Crosslinked Compl		8e-27

>pdb|3VX8|B Chain B, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3 Complex Length = 292

Iteration: 1
 Score =  503 bits (1294), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/293 (82%), Positives = 268/293 (91%), Gaps = 6/293 (2%)
Query: 26  AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAA 85
           AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ SKRK YLP+DKQFLITRNVPCLRRAA
Sbjct: 5   AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAA 64
Query: 86  SVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAIS 145
           SV E+YE AGGE+LVD+EDNDGWLATHGKPK K  E+  DNLPSM+A++I++ N +++I 
Sbjct: 65  SVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKGKEE--DNLPSMDALDINEKNTIQSIP 122
Query: 146 TYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISI 205
           TYFGG      DIPDM E++E D+++EN  DPATL STYLVAHEPDDDNILRTRTYD+SI
Sbjct: 123 TYFGGEEDD--DIPDMEEFDEADNVVEN--DPATLQSTYLVAHEPDDDNILRTRTYDLSI 178
Query: 206 TYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCR 265
           TYDKYYQTPRVWLTGYDESRMLL+ EL++EDVSQDHARKTVTIEDHPHL GKHAS+HPCR
Sbjct: 179 TYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQDHARKTVTIEDHPHLPGKHASVHPCR 238
Query: 266 HGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDLGSSS 318
           HGAVMKKIIDVL+SRGVEPEVDKYLFLFLKF+ASVIPTIEYDYTMDFDLGSSS
Sbjct: 239 HGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYDYTMDFDLGSSS 291

>pdb|2DYT|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg3 Length = 312

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 147/318 (46%), Gaps = 60/318 (18%)
Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSW--ESGEPSKRKSYLPADKQFLITRNVPCLR 82
           S F   G ++  EFV AGD L    PTW W  ES + S R  +LP +KQFLI R VPC +
Sbjct: 22  STFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYR-DFLPKNKQFLIIRKVPCDK 80
Query: 83  RAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVR 142
           RA   E+  E  G ++++     DG              DEDD L  +     S+  +V+
Sbjct: 81  RA---EQCVEVEGPDVIMKGFAEDG--------------DEDDVLEYIG----SETEHVQ 119
Query: 143 AISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYD 202
             ST  GG      D     + +E    +E + +     +    A      ++ + R YD
Sbjct: 120 --STPAGGTKDSSID-----DIDELIQDMEIKEEDENDDTEEFNAKGGLAKDMAQERYYD 172
Query: 203 ISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGK--HAS 260
           + I Y   Y+ P++++ G++ +   L  E + ED+S D+  KT TIE  P         S
Sbjct: 173 LYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFEDISADYRTKTATIEKLPFYKNSVLSVS 232
Query: 261 IHPCRHGAVMKKIID------VLVSRGVEPE---------------------VDKYLFLF 293
           IHPC+H  VMK ++D          + ++ E                     VD+YL +F
Sbjct: 233 IHPCKHANVMKILLDKVRVVRQRRRKELQEEQELDGVGDWEDLQDDIDDSLRVDQYLIVF 292
Query: 294 LKFVASVIPTIEYDYTMD 311
           LKF+ SV P+I++DYTM+
Sbjct: 293 LKFITSVTPSIQHDYTME 310

>pdb|4GSL|C Chain C, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex Length = 312

Iteration: 1
 Score =  117 bits (293), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 146/318 (45%), Gaps = 60/318 (18%)
Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSW--ESGEPSKRKSYLPADKQFLITRNVPCLR 82
           S F   G ++  EFV AGD L    PTW W  ES + S R  +LP +KQFLI R VP  +
Sbjct: 22  STFLTTGQITPEEFVQAGDYLAHMFPTWKWNEESSDISYR-DFLPKNKQFLIIRKVPADK 80
Query: 83  RAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVR 142
           RA   E+  E  G ++++     DG              DEDD L  +     S+  +V+
Sbjct: 81  RA---EQAVEVEGPDVIMKGFAEDG--------------DEDDVLEYIG----SETEHVQ 119
Query: 143 AISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYD 202
             ST  GG      D     + +E    +E + +     +    A      ++ + R YD
Sbjct: 120 --STPAGGTKDSSID-----DIDELIQDMEIKEEDENDDTEEFNAKGGLAKDMAQERYYD 172
Query: 203 ISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGK--HAS 260
           + I Y   Y+ P++++ G++ +   L  E + ED+S D+  KT TIE  P         S
Sbjct: 173 LYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFEDISADYRTKTATIEKLPFYKNSVLSVS 232
Query: 261 IHPCRHGAVMKKIID------VLVSRGVEPE---------------------VDKYLFLF 293
           IHPC+H  VMK ++D          + ++ E                     VD+YL +F
Sbjct: 233 IHPCKHANVMKILLDKVRVVRQRRRKELQEEQELDGVGDWEDLQDDIDDSLRVDQYLIVF 292
Query: 294 LKFVASVIPTIEYDYTMD 311
           LKF+ SV P+I++DYTM+
Sbjct: 293 LKFITSVTPSIQHDYTME 310

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	319
2dyt_A	312	Autophagy-related protein 3; E2 fold, ligase; 2.50	3e-94
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2lpu_A	152	Kmatg10; autophagy, E2-like, proteolysis, protein	4e-04

>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae} Length = 312

 Score =  280 bits (718), Expect = 3e-94
 Identities = 83/335 (24%), Positives = 131/335 (39%), Gaps = 58/335 (17%)

Query: 7   FYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSW-ESGEPSKRKSY 65
                    E +T     S F   G ++  EFV AGD L    PTW W E       + +
Sbjct: 4   IRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYRDF 63

Query: 66  LPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDD 125
           LP +KQFLI R VPC +RA    E             + ++  +  +   + +  +    
Sbjct: 64  LPKNKQFLIIRKVPCDKRAEQCVEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPA 123

Query: 126 NLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYL 185
                 +++                E +EE++  D  E+N                    
Sbjct: 124 GGTKDSSIDDIDELIQ-------DMEIKEEDENDDTEEFNA------------------- 157

Query: 186 VAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKT 245
                   ++ + R YD+ I Y   Y+ P++++ G++ +   L  E + ED+S D+  KT
Sbjct: 158 --KGGLAKDMAQERYYDLYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFEDISADYRTKT 215

Query: 246 VTIEDHPHLTG--KHASIHPCRHGAVMKKIIDVLVSR----------------------- 280
            TIE  P         SIHPC+H  VMK ++D +                          
Sbjct: 216 ATIEKLPFYKNSVLSVSIHPCKHANVMKILLDKVRVVRQRRRKELQEEQELDGVGDWEDL 275

Query: 281 ----GVEPEVDKYLFLFLKFVASVIPTIEYDYTMD 311
                    VD+YL +FLKF+ SV P+I++DYTM+
Sbjct: 276 QDDIDDSLRVDQYLIVFLKFITSVTPSIQHDYTME 310

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 8e-08
 Identities = 49/333 (14%), Positives = 94/333 (28%), Gaps = 70/333 (21%)

Query: 2   ELQQKF-YGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           ++Q K  + IF   ++   S  TV    +K +  +     +  +  S             
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL---RIHSIQ 231

Query: 61  KRKSYLPADKQF----LITRNV-----------PC----LRRAASVEEEYEGAGGEILVD 101
                L   K +    L+  NV            C      R   V +    A    +  
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 102 NEDNDGWLATHGKPK---AKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDI 158
           +  +     T  + K    K  +    +LP  E +      N R +S       E   D 
Sbjct: 292 DHHSMTL--TPDEVKSLLLKYLDCRPQDLPR-EVLTT----NPRRLSI-IA---ESIRDG 340

Query: 159 PDMAEY------NEPDSIIE---NETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDK 209
               +       ++  +IIE   N  +PA     +      D  ++         I    
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF------DRLSVFP---PSAHIPTIL 391

Query: 210 YYQTPRVWLTGYDESRMLLKTELI-LEDVSQDHARKTVTIEDHPHLTGKHASIHPCRHGA 268
                 +W        M++  +L     V +     T++I                 H  
Sbjct: 392 L---SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-- 446

Query: 269 VMKKIID-VLVSRGVE------PEVDKYLFLFL 294
             + I+D   + +  +      P +D+Y +  +
Sbjct: 447 --RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 51/326 (15%), Positives = 87/326 (26%), Gaps = 106/326 (32%)

Query: 10  IFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDN-----LVSKCPTWSWESGEPS-KRK 63
           I         + R       K    V +FV          L+S       E  +PS   +
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP---IKTEQRQPSMMTR 110

Query: 64  SY------LPADKQFLITRNVP------CLRRAASV--EEEY---EGAGGEILVDNEDND 106
            Y      L  D Q     NV        LR+A       +    +G  G          
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--------- 161

Query: 107 G--WLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEY 164
           G  W+A        C   +         V+   +  +  ++               +   
Sbjct: 162 GKTWVA-----LDVCLSYK---------VQCKMDFKIFWLN---------------LKNC 192

Query: 165 NEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDES 224
           N P++++E                      +L     + +   D          +   E 
Sbjct: 193 NSPETVLEMLQ------------------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 225 RMLLKTE------LILEDV-SQDHAR------KTVTIEDHPHLTGKHASIHPCRHGAVMK 271
           R LLK++      L+L +V +           K +       LT +   +      A   
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-------LTTRFKQVTDFLSAATTT 287

Query: 272 KIIDVLVSRGVEPEVDKYLFLFLKFV 297
            I     S  + P  D+   L LK++
Sbjct: 288 HISLDHHSMTLTP--DEVKSLLLKYL 311

>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR {Kluyveromyces marxianus} Length = 152

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 7/88 (7%)

Query: 200 TYDISITYDKYYQTPRVWLTGYD---ESRMLLKTELILEDVSQ----DHARKTVTIEDHP 252
             ++ I YD  Y  P +    +    E  +     L L D       +    +VT+    
Sbjct: 50  LLELHIYYDHVYHVPSIKFRLWSLDTEEDISSLRLLTLSDSELRSILNLGTFSVTLSTDM 109

Query: 253 HLTGKHASIHPCRHGAVMKKIIDVLVSR 280
            +   +  I+ C   A +   ++  ++R
Sbjct: 110 EMKSVYYYINNCDTDANVGSDVEHYLTR 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
3vx8_B	292	Autophagy-related protein 3; E1-E2 complex, ligase	100.0
2dyt_A	312	Autophagy-related protein 3; E2 fold, ligase; 2.50	100.0
4ebr_A	169	Ubiquitin-like-conjugating enzyme ATG10; autophagy	99.9
3vx7_B	152	E2; ubiquitin conjugation; 3.20A {Kluyveromyces ma	99.67
2lpu_A	152	Kmatg10; autophagy, E2-like, proteolysis, protein	99.08

>3vx8_B Autophagy-related protein 3; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}

Probab=100.00  E-value=1e-112  Score=805.38  Aligned_cols=287  Identities=83%  Similarity=1.332  Sum_probs=170.7

Q ss_pred             ccccccccChHHHHHhcccccccCCccccCCCCCCCCCCCCCCCCeeEEeCCCcchhhhhhhhhhhhccCCcccccCCCC
Q 020931           26 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDN  105 (319)
Q Consensus        26 ~F~etG~LTPeEFV~AGD~LV~k~PTW~W~~g~~~k~r~yLP~dKQfLvTRnVPC~~R~~~~~~e~~~~~~~~~~~~~~d  105 (319)
                      +|++||+|||||||+||||||||||||||++|+++++|+|||+||||||||||||+|||+++.++|..+.++++++++++
T Consensus         5 ~F~etG~lTPEEFV~AGD~LV~kfPTW~W~~g~~~k~~~yLP~dKQfLvTRnVPC~~R~~~~~~~~~~~~e~~~~~~d~d   84 (292)
T 3vx8_B            5 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDN   84 (292)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHCTTCEEECCCGGGCCTTSCTTCSEEEEEEEEECSCTTC-------------------
T ss_pred             ceeeCceeCHHHHHhhhhhhhhcCCCccCCCCCccccccCCCCCCeEEEECCcccHHHhhhhhccccccchhhccccCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999766777777777777778


Q ss_pred             CceeecCCCCCCCCCCCccCCCCCchhhhhhcccccccccCCCCCCCCCcCCccCcccCCCCCCCccCCCCCCCCCCccc
Q 020931          106 DGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYL  185 (319)
Q Consensus       106 dgWv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dm~~~~~~~~l~~~edD~~~~~~~~~  185 (319)
                      +|||.||+.....  ....+.+++|+...........+..+  ...++++++|+||++++++++++  ++|++++.+++.
T Consensus        85 dgWv~t~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~d~~ei~Dmdd~~d~~~~~--~dd~a~~~~~~~  158 (292)
T 3vx8_B           85 DGWLATHGKPKDK--GKEEDNLPSMDALDINEKNTIQSIPT--YFGGEEDDDIPDMEEFDEADNVV--ENDPATLQSTYL  158 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceeecCCccccc--cccccccccccccccccccccccccc--ccccccccccCchhhhhcccccc--ccchhhhccccc
Confidence            9999998743221  12344667765443211111111111  12346688999999998877654  566666544333


Q ss_pred             ccCCCCCCCcceeEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHHHHhhhhhccCcceeccCCCCCCCCceEEecCC
Q 020931          186 VAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCR  265 (319)
Q Consensus       186 ~~~~~~~~~i~~~rtYD~~ItYs~~YqvPrLyl~gy~~~g~PLt~ee~~eDi~~d~~~ktVT~e~HP~lg~~~~sIHPCk  265 (319)
                      ...+.++++|+++|+||||||||+|||||||||+||+++|+||++++|||||+++|++|||||++|||||+|+++|||||
T Consensus       159 ~~~~~~~~~i~~~RtYd~~ItYs~~YqtPrLyl~gy~~~g~PL~~ee~~edi~~d~~~ktVT~e~HP~l~~p~~siHPC~  238 (292)
T 3vx8_B          159 VAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQDHARKTVTIEDHPHLPGKHASVHPCR  238 (292)
T ss_dssp             ----------CCCEEEEEEEEEETTTTEEEEEEEEECTTSCBCCGGGGGGTSCCC----CEEEEECSSSSSEEEEECGGG
T ss_pred             cccccCcccccceEEEEEEEEEECCCCCCeEEEEEECCCCCcCCHHHHHHHhhhhhhcceEEeecCCccCCceeEEecCC
Confidence            22333456899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhCCCCCccchhHHHHHHHhhhcccceeecccceeeccCCC
Q 020931          266 HGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDLGSSS  318 (319)
Q Consensus       266 ha~vMk~l~~~~~~~~~~~~v~~YL~ifLkFi~sViPTIEyDyT~~~~~~~~~  318 (319)
                      ||+|||+|++++.++|++++|++||++|||||++|||||||||||+|+|++++
T Consensus       239 ha~vMk~l~~~~~~~~~~~~v~~YL~ifLkFi~sViPTIEyDyT~~~~~~~~~  291 (292)
T 3vx8_B          239 HGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYDYTMDFDLGSSS  291 (292)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCGGGHHHHHHHHHTTTSTTCCCCCCC--------
T ss_pred             cHHHHHHHHHHHHhcCCCcChhhHHHHHHHHHhhccCCEEEEeeeeEeccCCC
Confidence            99999999999999999999999999999999999999999999999998775

>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-106  Score=765.42  Aligned_cols=270  Identities=31%  Similarity=0.548  Sum_probs=173.1

Q ss_pred             HHHHHHhhhhhhcccCCCcCccccccccChHHHHHhcccccccCCccccCCC-CCCCCCCCCCCCCeeEEeCCCcchhhh
Q 020931            6 KFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG-EPSKRKSYLPADKQFLITRNVPCLRRA   84 (319)
Q Consensus         6 ~~~s~~~~~~e~ltpv~~~S~F~etG~LTPeEFV~AGD~LV~k~PTW~W~~g-~~~k~r~yLP~dKQfLvTRnVPC~~R~   84 (319)
                      .|+|++++||||||||+|+|+|++||+|||||||+||||||||||||||++| +++|+|+|||+||||||||||||+|||
T Consensus         3 ~~~s~~~~~~e~ltpv~~~S~F~etG~lTPeEFV~AGD~Lv~k~PTW~W~~~~~~~k~~~yLP~dKQfLiTRnVPC~~R~   82 (312)
T 2dyt_A            3 MIRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYRDFLPKNKQFLIIRKVPCDKRA   82 (312)
T ss_dssp             --------------------CHHHHSCCCHHHHHHHHHHHHHHCTTCEECCCCTTBCCCTTSCTTCSCEEEEEEEECSCT
T ss_pred             hHHHHHHHHHHHhcCCCCccccccCcccCHHHHHhcchhhhhhCCccccccCCCcccccCCCCCCceEEEecCcccHHHh
Confidence            5899999999999999999999999999999999999999999999999865 788999999999999999999999999


Q ss_pred             hhhhhhhhccCCcccc-------cCCCCCceeecC--CCCCCCCCCCccCCCCCchhhhhhcccccccccCCCCCCCCCc
Q 020931           85 ASVEEEYEGAGGEILV-------DNEDNDGWLATH--GKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEE  155 (319)
Q Consensus        85 ~~~~~e~~~~~~~~~~-------~~~~ddgWv~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (319)
                      +++   +....+++++       ++++++|||.||  +...........+++++|+                   +.+++
T Consensus        83 ~~~---~~~~~~~~~~~~~~~~~~~~~~dgWv~t~~~~~~~~~~~~~~~~~i~~~~-------------------~~~d~  140 (312)
T 2dyt_A           83 EQC---VEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDID-------------------ELIQD  140 (312)
T ss_dssp             TTC------------------------------------------------CHHHH-------------------HHHHH
T ss_pred             hhc---cccchhhhhhccccccccccCCCceeeccccccccCcccccccccccccc-------------------ccccc
Confidence            998   3333344333       345678999998  2111000000011111110                   00112


Q ss_pred             CCccCcccCCCCCCCccCCCCCCCCCCcccccCCCCCCCcceeEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHHHH
Q 020931          156 EDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILE  235 (319)
Q Consensus       156 ~~i~Dm~~~~~~~~l~~~edD~~~~~~~~~~~~~~~~~~i~~~rtYD~~ItYs~~YqvPrLyl~gy~~~g~PLt~ee~~e  235 (319)
                      ++|+|.+      +    ++|++++....     ..+++|.++|+||||||||+|||||||||+||+++|+||++++||+
T Consensus       141 ~~~~d~~------~----~~d~~~~~~~~-----~~~~~~~~~rtYd~~ItYs~sYqvPvLyf~gy~~dg~PL~~~e~~e  205 (312)
T 2dyt_A          141 MEIKEED------E----NDDTEEFNAKG-----GLAKDMAQERYYDLYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFE  205 (312)
T ss_dssp             HHHC-----------------------------------CCCCEEEEEEEEEETTTTEEEEEEEEEETTCCBCCHHHHHT
T ss_pred             ccccccc------c----cCCHHHhhccc-----cccCCccceEEEEEEEEEecCccCCeEEEEeECCCCCCCCHHHHHH
Confidence            2233211      0    22322221111     1345789999999999999999999999999999999999999999


Q ss_pred             hhhhhccCcceeccCCCC--CCCCceEEecCCcHHHHHHHHHHHH---------------------------hCCCCCcc
Q 020931          236 DVSQDHARKTVTIEDHPH--LTGKHASIHPCRHGAVMKKIIDVLV---------------------------SRGVEPEV  286 (319)
Q Consensus       236 Di~~d~~~ktVT~e~HP~--lg~~~~sIHPCkha~vMk~l~~~~~---------------------------~~~~~~~v  286 (319)
                      ||+++|+.|||||++|||  +|+|+++|||||||+|||.|++++.                           +++++|||
T Consensus       206 di~~d~~~ktVT~e~HP~~~lg~p~~sIHPCkta~vMk~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~irv  285 (312)
T 2dyt_A          206 DISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANVMKILLDKVRVVRQRRRKELQEEQELDGVGDWEDLQDDIDDSLRV  285 (312)
T ss_dssp             TSCTTTHHHHEEEEECTTBSSCCEEEEECSCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTC--------CCCCG
T ss_pred             HHHHhhccCceecccCCCccCCCceEEEecCcHHHHHHHHHHHHhhhhhhccccccccccccccccchhcccccCCCcCc
Confidence            999999999999999999  8999999999999999999999887                           46778999


Q ss_pred             chhHHHHHHHhhhcccceeeccccee
Q 020931          287 DKYLFLFLKFVASVIPTIEYDYTMDF  312 (319)
Q Consensus       287 ~~YL~ifLkFi~sViPTIEyDyT~~~  312 (319)
                      +|||++|||||+||||||||||||+|
T Consensus       286 d~YLviFLKFIasViPtIEyD~T~~~  311 (312)
T 2dyt_A          286 DQYLIVFLKFITSVTPSIQHDYTMEG  311 (312)
T ss_dssp             GGHHHHHHHHHHHHSTTBCCTTC---
T ss_pred             chhHHHHHHHhcccCCCeEeeecccC
Confidence            99999999999999999999999987

>4ebr_A Ubiquitin-like-conjugating enzyme ATG10; autophagy, ligase, protein binding, A ATG5, thiolation; 2.70A {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.4e-25  Score=194.72  Aligned_cols=91  Identities=15%  Similarity=0.215  Sum_probs=79.2

Q ss_pred             eeEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHH------HHHHhhhhhccCcceec-cCCCCCCCCceEEecCCcHHH
Q 020931          197 RTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTE------LILEDVSQDHARKTVTI-EDHPHLTGKHASIHPCRHGAV  269 (319)
Q Consensus       197 ~~rtYD~~ItYs~~YqvPrLyl~gy~~~g~PLt~e------e~~eDi~~d~~~ktVT~-e~HP~lg~~~~sIHPCkha~v  269 (319)
                      +.++||+||+||++||||||||+||+++|.|+...      +++++++..++.++|+. .+||++|.|+++||||+||++
T Consensus        61 ~~~~id~~I~Ys~sYqVPvL~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~Hp~~g~p~~~iHPC~T~~~  140 (169)
T 4ebr_A           61 LLNHIELYLTYSKVYNEPLLLLRIWEEKSIDGIPMTKLMLPTDIESLLDVQGKFQLGLDTIINLEGSVWYSFHPCDTSCI  140 (169)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEEEEEEETTEEEEEECCHHHHHHHHTTTTCCCCSSEEEEEETTEEEEECCSSCGGGS
T ss_pred             cceEEEEEEEEecccCCcEEEEEEEcCCCCccchhhhhcchHHHHHHhccccceEEEeccCCCCCCCceEEEcCcCcHHH
Confidence            56899999999999999999999999999876654      67888888888887775 479999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCccchhHHHHHHH
Q 020931          270 MKKIIDVLVSRGVEPEVDKYLFLFLKF  296 (319)
Q Consensus       270 Mk~l~~~~~~~~~~~~v~~YL~ifLkF  296 (319)
                      |+.+         ..+..+||+.||++
T Consensus       141 m~~~---------~~~~~~YL~~WlSl  158 (169)
T 4ebr_A          141 VGDQ---------AEFMSTYLRRWVSI  158 (169)
T ss_dssp             CCTT---------CTTGGGGHHHHHHH
T ss_pred             Hhcc---------ccchHhHHHHHHHH
Confidence            9653         34567999999986

>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A

Probab=99.67  E-value=8.7e-18  Score=145.99  Aligned_cols=88  Identities=15%  Similarity=0.235  Sum_probs=69.5

Q ss_pred             eEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHHH----------HhhhhhccCcceeccCCCCCCCCceEEecCCcH
Q 020931          198 TRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELIL----------EDVSQDHARKTVTIEDHPHLTGKHASIHPCRHG  267 (319)
Q Consensus       198 ~rtYD~~ItYs~~YqvPrLyl~gy~~~g~PLt~ee~~----------eDi~~d~~~ktVT~e~HP~lg~~~~sIHPCkha  267 (319)
                      ...||+||+||.+||||+|||+.|..+  .+...+++          +++.+-- ..+|++..||+++.||+.||||+|+
T Consensus        48 ~~~~e~~I~Ys~~YqvPvL~fR~~~~~--~~~~ie~~~~~~~~~~~i~~ll~i~-~~sI~L~~hp~l~~~wy~IHPCdT~  124 (152)
T 3vx7_B           48 DTLLELHIYYDHVYHVPSIKFRLWSLD--TEEDISSLRLLTLSDSELRSILNLG-TFSVTLSTDMEMKSVYYYINNCDTD  124 (152)
T ss_dssp             TEEEEEEEEECSSSSSEEEEEEEEEEE--ECSSSEEEEECCCCHHHHHHHSCCT-TCCEEEEECTTSSSEEEEECCTTHH
T ss_pred             ceEEEEEEEEeccccCceEEEEeecCC--cccchhhheeccCchhhHHHHhccc-ceeEEeeeccccCCceEEEcCccHH
Confidence            488999999999999999999999876  23322221          2222111 4689999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCccchhHHHHHHHhhhc
Q 020931          268 AVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASV  300 (319)
Q Consensus       268 ~vMk~l~~~~~~~~~~~~v~~YL~ifLkFi~sV  300 (319)
                      ++|+...            .+||..|+++.++.
T Consensus       125 eivg~~~------------~nYL~rW~Svyg~~  145 (152)
T 3vx7_B          125 ANVGSDV------------EHYLTRWISLYIRI  145 (152)
T ss_dssp             HHHCSCS------------TTHHHHHHHHHGGG
T ss_pred             HHhccch------------hhHHHHHHHHHHHH
Confidence            9998432            59999999998763

>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR {Kluyveromyces marxianus}

Probab=99.08  E-value=3.7e-14  Score=122.53  Aligned_cols=92  Identities=15%  Similarity=0.243  Sum_probs=69.5

Q ss_pred             eeEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHHHHhhhhhc--------cCcceeccCCCCCCCCceEEecCCcHH
Q 020931          197 RTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDH--------ARKTVTIEDHPHLTGKHASIHPCRHGA  268 (319)
Q Consensus       197 ~~rtYD~~ItYs~~YqvPrLyl~gy~~~g~PLt~ee~~eDi~~d~--------~~ktVT~e~HP~lg~~~~sIHPCkha~  268 (319)
                      .--++|++|+||++||||+|||+-|..++ -...+.+.--++.++        ..-+|++..||+.+.+|++||||.|++
T Consensus        47 ~~~~iE~~I~Y~~~YqVP~L~fRlwe~~~-~~~i~~~~l~fp~~~~~~~iL~i~~fsi~Ld~~~~~~s~Wy~IHpCdTs~  125 (152)
T 2lpu_A           47 TDTLLELHIYYDHVYHVPSIKFRLWSLDT-EEDISSLRLLTLSDSELRSILNLGTFSVTLSTDMEMKSVYYYINNCDTDA  125 (152)
Confidence            34678999999999999999999998886 222222211122221        114589999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCccchhHHHHHHHhhhcc
Q 020931          269 VMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVI  301 (319)
Q Consensus       269 vMk~l~~~~~~~~~~~~v~~YL~ifLkFi~sVi  301 (319)
                      +|+.            .+++||..|+++-+..+
T Consensus       126 iVg~------------~~~~YL~rW~SvYg~~~  146 (152)
T 2lpu_A          126 NVGS------------DVEHYLTRWISLYIRIF  146 (152)
Confidence            9977            34699999999877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00