Citrus Sinensis ID: 020999

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MEATATREAVTSATTGVTVVGSDAPSEFHIAPRSENPTLTSAPPPPATQPPAPAPPPALPLKKKRGRPRKYGPDGTVTMALSPKPISSAAPSPPVIDFSAEKPRKVKPASSFSKSKYEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKHKKQKNEPISIATPTAAIPISSADPKGSLTTSTFRGDGWSSLPSDSRNKPTDINASLPVG
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEEEcccccHHHHHHHHHHcccEEEEEEEEcccEEEEEEcccccccccEEEEEEEEEEEEEEEEcccccccccccccccEEEEccccccEEEEEcccEEEEcccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEccccccccccccccccccEEEEEEcccccEEEccEHHHEEccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MEATATREAvtsattgvtvvgsdapsefhiaprsenptltsappppatqppapapppalplkkkrgrprkygpdgtvtmalspkpissaapsppvidfsaekprkvkpassfskskyevENIGEWVAcsvganftphiitvntgedvTMKIISFSQQGPRAICILSangvissvtlrqpdssggtltyegRFEILSlsgsfmpsdsggtrsrsggmsvslaspdgrvvgGGVAGLLVAASPVQVVVGSFlagnqheqkhkkqknepisiatptaaipissadpkgslttstfrgdgwsslpsdsrnkptdinaslpvg
Flexible Loop (DISEMBL)
meatatreavtsattgvtvvgsdAPSEFHIAPRSENPTLTSAPPPPATqppapapppalplkkkrgrprkYGPDGTVTMALSPKPISSAAPSPPVIDfsaekprkvkpassfskskyeVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISsvtlrqpdssggtLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEqkhkkqknepisiatptaaipissadpkGSLTTSTFrgdgwsslpsdsrnkptdinaslpvg
Low Complexity Region (SEG)
MEATATREavtsattgvtvvgsDAPSEFHIAPRSENptltsappppatqppapapppalplkkkrgrprkygpDGTVTMalspkpissaapsppVIDFSAEKPRKVKPASSFSKSKYEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPsdsggtrsrsggmsvsLASPDGRvvgggvagllvaaSPVQVVVGSFLAGnqheqkhkkqknepisiatptaaipissaDPKGSLTTSTFRGDGWSSLPSDSRNKPTDINASLPVG
Disordered region (IsUnstruct)
********************************************************************************************************************YEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLR*******TLTYEGRFEILS*****************************RVVGGGVAGLLVAASPVQVVVGSFLA*******************************************************************
Disordered Region (DISOPRED)
*********************************************************************************************************************************VGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSD*******SGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFL********************************************************************
Disordered Region (DISEMBL)
*************TTGVTVVGSDAPSEFHIAPRSENPT****************PPPALPLKKKRGRPRKYGPDGTVTMALSPKPISSAAPSPPVIDFSAE**************KYEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSF****************VSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGN***********EPISIATPTAAIPISSADPKGSLTTSTFRGDGWSSLPSDSRNKPTDINASLPVG
Disordered Region (DISPRO)
******REAVTSATTGVTVVGSDAPSEF***********************************************TVTM*************************************Y*VENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAG******************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEATATREAVTSATTGVTVVGSDAPSEFHIAPRSENPTLTSAPPPPATQPPAPAPPPALPLKKKRGRPRKYGPDGTVTMALSPKPISSAAPSPPVIDFSAEKPRKVKPASSFSKSKYEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKHKKQKNEPISIATPTAAIPISSADPKGSLTTSTFRGDGWSSLPSDSRNKPTDINASLPVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.345	0.353	0.368	2e-06
Q2JVA4	621	Bifunctional protein GlmU	yes	no	0.298	0.152	0.345	0.0006

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 12/122 (9%)

Query: 137 HIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQP---------DSSGGTLT 187
           H++ V+ G D+   + +++++  R + +L  NG +S+VTLRQP            GG +T
Sbjct: 116 HVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVT 175

Query: 188 YEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVG 247
             GRFEILSL+G+ +P         +GG+S+ LA   G+VVGG V   L+A++PV ++  
Sbjct: 176 LHGRFEILSLTGTVLPPP---APPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAA 232

Query: 248 SF 249
           SF
Sbjct: 233 SF 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q2JVA4|GLMU_SYNJA Bifunctional protein GlmU OS=Synechococcus sp. (strain JA-3-3Ab) GN=glmU PE=3 SV=1

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 15/110 (13%)

Query: 144 GEDVTMKIISFSQQGP-RAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFM 202
           G+D+  ++  F++Q P +A  +LSA G +S  TLR  D +   L  E R EIL+LSGS  
Sbjct: 478 GQDLKQELERFARQQPLQAGFVLSAVGSLSQATLRLADQTEDYLLSE-RLEILALSGSLC 536

Query: 203 PSDSGGTRSRSGGMSVSLASPD--GRVVGGGVA-GLLVAASPVQVVVGSF 249
           P           G+ + LA  D  GR  GG +  G L+  +   V+  S 
Sbjct: 537 PD----------GVHLHLAVADAQGRTWGGHLRPGCLIYTTAEIVLADSL 576

Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-GlcNAc. Responsible for the acetylation of Glc-N-1-P to give GlcNAc-1-P and for the uridyl transfer from UTP to GlcNAc-1-P which produces UDP-GlcNAc.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
356514170	327	PREDICTED: uncharacterized protein LOC10	0.977	0.951	0.723	1e-119
147794107	457	hypothetical protein VITISV_031923 [Viti	0.943	0.656	0.751	1e-118
225426649	346	PREDICTED: uncharacterized protein LOC10	0.949	0.872	0.75	1e-117
449459666	330	PREDICTED: uncharacterized protein LOC10	0.952	0.918	0.757	1e-117
356563280	331	PREDICTED: uncharacterized protein LOC10	0.943	0.906	0.722	1e-116
255537127	322	DNA binding protein, putative [Ricinus c	0.974	0.962	0.760	1e-114
297742667	261	unnamed protein product [Vitis vinifera]	0.814	0.992	0.865	1e-113
224074727	333	predicted protein [Populus trichocarpa]	0.990	0.945	0.708	1e-105
22328578	356	AT-hook motif nuclear-localized protein	0.981	0.876	0.629	1e-104
4586113	365	putative DNA-binding protein [Arabidopsi	0.981	0.854	0.607	1e-101

>gi|356514170|ref|XP_003525779.1| PREDICTED: uncharacterized protein LOC100801730 [Glycine max]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/326 (72%), Positives = 272/326 (83%), Gaps = 15/326 (4%)

Query: 8   EAVTSATTGVTVVGSDAPSEFHIAPRSENPT----LTSAPPPPATQPPAPAPPP------ 57
           EA    ++GVTVVGSDAPS++H+APR++NP      T+  P  A    +P+ PP      
Sbjct: 2   EASGGVSSGVTVVGSDAPSDYHVAPRTDNPAPASGSTTQIPATAGSALSPSHPPHTAAME 61

Query: 58  ----ALPLKKKRGRPRKYGPDGTVTMALSPKPISSAAPSPPVIDFSAEKPRKVKPASSFS 113
                +P KKKRGRPRKY PDG+VTMALSPKPISS+AP PPVIDFS+EK  K+KPASS S
Sbjct: 62  AYPATMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPASSVS 121

Query: 114 KSKYEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISS 173
           K+K+E+EN+GEWVACSVGANFTPHIITVN+GEDVTMK+ISFSQQGPRAICILSANGVISS
Sbjct: 122 KAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISS 181

Query: 174 VTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVA 233
           VTLRQPDSSGGTLTYEGRFEILSLSGSFMP++SGGTRSRSGGMSVSLASPDGRVVGGGVA
Sbjct: 182 VTLRQPDSSGGTLTYEGRFEILSLSGSFMPNESGGTRSRSGGMSVSLASPDGRVVGGGVA 241

Query: 234 GLLVAASPVQVVVGSFLAGNQHEQKHKKQKNEPISIATPTAAIPISSADPKGSLT-TSTF 292
           GLLVAASPVQVVVGSFLAGNQHEQK +KQK+E IS  TP A +PIS+ DP   L+  S+ 
Sbjct: 242 GLLVAASPVQVVVGSFLAGNQHEQKPRKQKHEVISSVTPAAVVPISTLDPVSILSAASSI 301

Query: 293 RGDGWSSLPSDSRNKPTDINASLPVG 318
           R D WS++P+++++KP DIN SLP G
Sbjct: 302 RNDNWSAMPAEAKDKPADINVSLPAG 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794107|emb|CAN62363.1| hypothetical protein VITISV_031923 [Vitis vinifera]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/330 (75%), Positives = 263/330 (79%), Gaps = 30/330 (9%)

Query: 17  VTVVGSDAPSEFHIAPRSENPTLTSAPPPPATQPPAPAPPPALPL--------------K 62
           VTVVGSDAPSE+H+A R+ENP+  +   P  T   A   P   P               K
Sbjct: 15  VTVVGSDAPSEYHVAARTENPSPVAGSSPAVTPAVAVPQPAPAPAPAPVPAAAVAMMPAK 74

Query: 63  KKRGRPRKYGPDGTVTMALSPKPISSAAPSPPVIDFSAEKPRKVKPASSFSKSKYEVENI 122
           KKRGRPRKYGPDGTVTMALSPKPISS+AP PPVIDFS EK  K++P  S SKSK E+EN+
Sbjct: 75  KKRGRPRKYGPDGTVTMALSPKPISSSAPGPPVIDFSVEKRGKIRPVGSASKSKMELENL 134

Query: 123 GEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSS 182
           GEWVACSVGANFTPHIITVN+GEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSS
Sbjct: 135 GEWVACSVGANFTPHIITVNSGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSS 194

Query: 183 GGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPV 242
           GGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPV
Sbjct: 195 GGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPV 254

Query: 243 QVVVGSFLAGNQHEQKHKKQKNEPISIATPTAAIPIS---------------SADPKGSL 287
           QVVVGSFL GNQHEQK KKQK EPIS A PTAA+PIS               SA PK +L
Sbjct: 255 QVVVGSFLTGNQHEQKPKKQKIEPISAARPTAAVPISSLEMEEPFGGHGQRPSATPKPNL 314

Query: 288 TTST-FRGDGWSSLPSDSRNKPTDINASLP 316
           ++ST FRGD WS LPSDSRNK TDIN SLP
Sbjct: 315 SSSTSFRGDNWSPLPSDSRNKATDINVSLP 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426649|ref|XP_002274756.1| PREDICTED: uncharacterized protein LOC100244375 [Vitis vinifera]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/332 (75%), Positives = 264/332 (79%), Gaps = 30/332 (9%)

Query: 17  VTVVGSDAPSEFHIAPRSENPTLTSAPPPPATQPPAPAPPPALPL--------------K 62
           VTVVGSDAPSE+H+A R+ENP+  +   P  T   A   P   P               K
Sbjct: 15  VTVVGSDAPSEYHVAARTENPSPVAGSSPAVTPAVAVPQPAPAPAPAPVPAAAVAMMPAK 74

Query: 63  KKRGRPRKYGPDGTVTMALSPKPISSAAPSPPVIDFSAEKPRKVKPASSFSKSKYEVENI 122
           KKRGRPRKYGPDGTVTMALSPKPISS+AP PPVIDFS EK  K++P  S SKSK E+EN+
Sbjct: 75  KKRGRPRKYGPDGTVTMALSPKPISSSAPGPPVIDFSVEKRGKIRPVGSASKSKMELENL 134

Query: 123 GEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSS 182
           GEWVACSVGANFTPHIITVN+GEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSS
Sbjct: 135 GEWVACSVGANFTPHIITVNSGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSS 194

Query: 183 GGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPV 242
           GGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPV
Sbjct: 195 GGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPV 254

Query: 243 QVVVGSFLAGNQHEQKHKKQKNEPISIATPTAAIPIS---------------SADPKGSL 287
           QVVVGSFL GNQHEQK KKQK EPIS A PTAA+PIS               SA PK +L
Sbjct: 255 QVVVGSFLTGNQHEQKPKKQKIEPISAARPTAAVPISSLEMEEPFGGHGQRPSATPKPNL 314

Query: 288 TTST-FRGDGWSSLPSDSRNKPTDINASLPVG 318
           ++ST FRGD WS LPSDSRNK TDIN SLP G
Sbjct: 315 SSSTSFRGDNWSPLPSDSRNKATDINVSLPGG 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459666|ref|XP_004147567.1| PREDICTED: uncharacterized protein LOC101210208 [Cucumis sativus] gi|449523579|ref|XP_004168801.1| PREDICTED: uncharacterized LOC101210208 [Cucumis sativus]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/321 (75%), Positives = 269/321 (83%), Gaps = 18/321 (5%)

Query: 13  ATTGVTVVGSDAPSEFHIAPR-SENPTLTS-APPPPATQ--------------PPAPAPP 56
           A++GVTVVGSDAPSE+ IAPR S+NP  T  +  PP TQ              PP P   
Sbjct: 9   ASSGVTVVGSDAPSEYKIAPRTSDNPPQTGGSTTPPGTQSTSTPSASAQVSGQPPPPTAA 68

Query: 57  PALPLKKKRGRPRKYGPDGTVTMALSPKPISSAAPSPPVIDFSAEKPRKVKPASSFSKSK 116
            ++P KKKRGRPRKYGPDG+V+MALSPKPIS + P PPVIDFS EK  KV+PAS+ SKSK
Sbjct: 69  SSVPGKKKRGRPRKYGPDGSVSMALSPKPISLSVP-PPVIDFSTEKKGKVRPASAVSKSK 127

Query: 117 YEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTL 176
           +EV+N+G+WV CS+GANFTPHIITVN GEDVTMKIISFSQQGPRAICILSANGVISSVTL
Sbjct: 128 FEVDNLGDWVPCSLGANFTPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTL 187

Query: 177 RQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLL 236
           RQPDSSGGTLTYEGRFEILSLSGSFMPSD+G TRSRSGGMSVSLASPDGRVVGGGVAGLL
Sbjct: 188 RQPDSSGGTLTYEGRFEILSLSGSFMPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLL 247

Query: 237 VAASPVQVVVGSFLAGNQHEQKHKKQKNEPISIATPTAAIPISSADPKGSLT-TSTFRGD 295
           VAASPVQVVVGSFL+GNQHEQK KK K++ IS A PTAAIPIS  DPK +L+ +S+FRGD
Sbjct: 248 VAASPVQVVVGSFLSGNQHEQKPKKPKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGD 307

Query: 296 GWSSLPSDSRNKPTDINASLP 316
            WS LP+DSRNK TDIN SLP
Sbjct: 308 NWSMLPTDSRNKSTDINVSLP 328

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563280|ref|XP_003549892.1| PREDICTED: uncharacterized protein LOC100794202 [Glycine max]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/321 (72%), Positives = 264/321 (82%), Gaps = 21/321 (6%)

Query: 16  GVTVVGSDAPSEFHIAPRSENPTLTSAPPPPATQPPA-----------------PAPPPA 58
           GVT+VGSDAPS++H+APR++NP   S      TQ PA                  A P  
Sbjct: 10  GVTLVGSDAPSDYHVAPRTDNPAPASGS---TTQIPATAGSVPPSPHPPHTAAMEAYPAK 66

Query: 59  LPLKKKRGRPRKYGPDGTVTMALSPKPISSAAPSPPVIDFSAEKPRKVKPASSFSKSKYE 118
           +P KKKRGRPRKY PDG+VTMALSPKPISS+AP PPVIDFS+EK  K+KP SS SK+K+E
Sbjct: 67  MPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPTSSVSKAKFE 126

Query: 119 VENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQ 178
           +EN+GEWVACSVGANFTPHIITVN+GEDVTMK+ISFSQQGPRAICILSANGVISSVTLRQ
Sbjct: 127 LENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQ 186

Query: 179 PDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVA 238
           PDSSGGTLTYEGRFEILSLSGSFMPS+SGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVA
Sbjct: 187 PDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVA 246

Query: 239 ASPVQVVVGSFLAGNQHEQKHKKQKNEPISIATPTAAIPISSADPKGSLT-TSTFRGDGW 297
           ASPVQVVVGSFLAGNQHEQK +KQ++E I+   P A +PIS+ DP   L+  S+ R D W
Sbjct: 247 ASPVQVVVGSFLAGNQHEQKPRKQRHEVITSVIPAAVVPISTLDPVPILSAASSIRNDNW 306

Query: 298 SSLPSDSRNKPTDINASLPVG 318
           S++P++++NKP DIN SLP G
Sbjct: 307 SAMPAEAKNKPADINVSLPAG 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537127|ref|XP_002509630.1| DNA binding protein, putative [Ricinus communis] gi|223549529|gb|EEF51017.1| DNA binding protein, putative [Ricinus communis]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/330 (76%), Positives = 273/330 (82%), Gaps = 20/330 (6%)

Query: 1   MEATATREAVTSATTGVTVVGSDAPSEFHIAPRSE---NPTLTSAPPPP--------ATQ 49
           MEA   RE V+S + GVTVVGSDAPS++ IAPRS    N    SAP PP         + 
Sbjct: 1   MEA---RETVSS-SGGVTVVGSDAPSDYQIAPRSTDNLNSIPGSAPTPPLQPAVAPPPSM 56

Query: 50  PPAPAPPPALPLKKKRGRPRKYGPDGTVTMALSPKPISSAAPSPP-VIDFSAEKPRKVKP 108
               A    + +KKKR RPRKYGPDGTVT ALSPKPIS+AAP+PP VIDFSAEK RK+KP
Sbjct: 57  AAPAAATATMAIKKKRERPRKYGPDGTVTKALSPKPISTAAPAPPPVIDFSAEKQRKIKP 116

Query: 109 ASSFSKSKYEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSAN 168
            S   K+KYE+EN+GEWVACSVGANFTPHIITVN GEDVTMKIISFSQQGPRAICILSAN
Sbjct: 117 VS---KTKYELENLGEWVACSVGANFTPHIITVNAGEDVTMKIISFSQQGPRAICILSAN 173

Query: 169 GVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVV 228
           GVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMP++SGGTRSRSGGMSVSLASPDGRVV
Sbjct: 174 GVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTESGGTRSRSGGMSVSLASPDGRVV 233

Query: 229 GGGVAGLLVAASPVQVVVGSFLAGNQHEQKHKKQKNEPISIATPTAAIPISSADPKGSLT 288
           GGGVAGLLVAASPVQVVVGSFLAGNQHEQK KKQK +     T TAAIPISS+DPK +L+
Sbjct: 234 GGGVAGLLVAASPVQVVVGSFLAGNQHEQKPKKQKPD-TITITTTAAIPISSSDPKLNLS 292

Query: 289 TSTFRGDGWSSLPSDSRNKPTDINASLPVG 318
            S+FRGD WSSLP+D+RNKPTDIN SLP G
Sbjct: 293 PSSFRGDSWSSLPTDARNKPTDINMSLPAG 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742667|emb|CBI34816.3| unnamed protein product [Vitis vinifera]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/261 (86%), Positives = 238/261 (91%), Gaps = 2/261 (0%)

Query: 59  LPLKKKRGRPRKYGPDGTVTMALSPKPISSAAPSPPVIDFSAEKPRKVKPASSFSKSKYE 118
           +P KKKRGRPRKYGPDGTVTMALSPKPISS+AP PPVIDFS EK  K++P  S SKSK E
Sbjct: 2   MPAKKKRGRPRKYGPDGTVTMALSPKPISSSAPGPPVIDFSVEKRGKIRPVGSASKSKME 61

Query: 119 VENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQ 178
           +EN+GEWVACSVGANFTPHIITVN+GEDVTMKIISFSQQGPRAICILSANGVISSVTLRQ
Sbjct: 62  LENLGEWVACSVGANFTPHIITVNSGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQ 121

Query: 179 PDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVA 238
           PDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVA
Sbjct: 122 PDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVA 181

Query: 239 ASPVQVVVGSFLAGNQHEQKHKKQKNEPISIATPTAAIPISSADPKGSLTTST-FRGDGW 297
           ASPVQVVVGSFL GNQHEQK KKQK EPIS A PTAA+PIS+  PK +L++ST FRGD W
Sbjct: 182 ASPVQVVVGSFLTGNQHEQKPKKQKIEPISAARPTAAVPISTT-PKPNLSSSTSFRGDNW 240

Query: 298 SSLPSDSRNKPTDINASLPVG 318
           S LPSDSRNK TDIN SLP G
Sbjct: 241 SPLPSDSRNKATDINVSLPGG 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074727|ref|XP_002304442.1| predicted protein [Populus trichocarpa] gi|222841874|gb|EEE79421.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/336 (70%), Positives = 264/336 (78%), Gaps = 21/336 (6%)

Query: 1   MEATATREAVTSATTGVTVVGSDAPSEFHIAPRSE-NPTLTSAPPPPATQPPAPAPPPA- 58
           ME T +     S   GVTVV SDAPS + IAPRS+ NP  T    PPA     P  PP  
Sbjct: 1   METTVSSN---SGGAGVTVVASDAPSNYQIAPRSDSNPNSTPGSAPPAPPQAPPQAPPPH 57

Query: 59  -------LPLKKKRGRPRKYGPDGTVTMALSPKPISSAAPSPP--VIDFSAEKPRKVKPA 109
                  +PLKKKRGRPRKYGPDG+VTMALSPKPISSAAP+P   VIDFS  K +K+KP 
Sbjct: 58  PSPAAATMPLKKKRGRPRKYGPDGSVTMALSPKPISSAAPAPSPPVIDFSVVKQKKIKPV 117

Query: 110 S------SFSKSKYEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAIC 163
           S      S+    ++ + +GEWVACSVGANFTPHIITVN GEDVTMKIISFSQQGPRAIC
Sbjct: 118 SKAKISVSWLLMLWQFDLLGEWVACSVGANFTPHIITVNAGEDVTMKIISFSQQGPRAIC 177

Query: 164 ILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASP 223
           +LSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMP+++GGTRSRSGGMSVSLASP
Sbjct: 178 VLSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTETGGTRSRSGGMSVSLASP 237

Query: 224 DGRVVGGGVAGLLVAASPVQ-VVVGSFLAGNQHEQKHKKQKNEPISIATPTAAIPISSAD 282
           DGRVVGGGVAGLLVAASPVQ VVVGSFLAGNQHEQK KKQK++ +S   PTAAIPIS AD
Sbjct: 238 DGRVVGGGVAGLLVAASPVQVVVVGSFLAGNQHEQKPKKQKHDSLSGVMPTAAIPISIAD 297

Query: 283 PKGSLTTSTFRGDGWSSLPSDSRNKPTDINASLPVG 318
           PK + ++ +FRGD WS LP +SRNKP DIN +LP G
Sbjct: 298 PKSNFSSPSFRGDSWSPLPPESRNKPADINLTLPAG 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328578|ref|NP_192945.2| AT-hook motif nuclear-localized protein 1 [Arabidopsis thaliana] gi|17979485|gb|AAL50079.1| AT4g12080/F16J13_150 [Arabidopsis thaliana] gi|23506149|gb|AAN31086.1| At4g12080/F16J13_150 [Arabidopsis thaliana] gi|118420990|dbj|BAF37220.1| AT-hook motif nuclear localized protein 1 [Arabidopsis thaliana] gi|332657694|gb|AEE83094.1| AT-hook motif nuclear-localized protein 1 [Arabidopsis thaliana]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/354 (62%), Positives = 256/354 (72%), Gaps = 42/354 (11%)

Query: 1   MEATATREAVTSATT---GVTVVGSDAPSEFHIAPRSENPTLT---------------SA 42
           ME+T   EAV S T    G+TVV SDAPS+FH+A RSE+   +               +A
Sbjct: 5   MESTG--EAVRSTTGNDGGITVVRSDAPSDFHVAQRSESSNQSPTSVTPPPPQPSSHHTA 62

Query: 43  PPPPATQPPAPAPPPALP-------LKKKRGRPRKYGPDGTVTMALSPKPISSAA----- 90
           PPP            A         +KKKRGRPRKYGPDGTV +ALSPKPISSA      
Sbjct: 63  PPPLQISTVTTTTTTAAMEGISGGLMKKKRGRPRKYGPDGTV-VALSPKPISSAPAPSHL 121

Query: 91  --PSPPVIDFSA-EKPRKVKPASSFSKSKY--EVENIGEWVACSVGANFTPHIITVNTGE 145
             PS  VIDFSA EK  KVKP +SF+++KY  +VEN+GEW  CSVG NFTPHIITVNTGE
Sbjct: 122 PPPSSHVIDFSASEKRSKVKPTNSFNRTKYHHQVENLGEWAPCSVGGNFTPHIITVNTGE 181

Query: 146 DVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSD 205
           DVTMKIISFSQQGPR+IC+LSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMP+D
Sbjct: 182 DVTMKIISFSQQGPRSICVLSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPND 241

Query: 206 SGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKHKKQKNE 265
           SGGTRSR+GGMSVSLASPDGRVVGGG+AGLLVAASPVQVVVGSFLAG  H+ +  K+   
Sbjct: 242 SGGTRSRTGGMSVSLASPDGRVVGGGLAGLLVAASPVQVVVGSFLAGTDHQDQKPKKNKH 301

Query: 266 PISIATPTAAIPISS-ADPKGSLTTSTF--RGDGW-SSLPSDSRNKPTDINASL 315
              +++PTAAIPISS AD +   + S+     + W +SL SD RNK TDIN ++
Sbjct: 302 DFMLSSPTAAIPISSAADHRTIHSVSSLPVNNNTWQTSLASDPRNKHTDINVNV 355

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4586113|emb|CAB40949.1| putative DNA-binding protein [Arabidopsis thaliana] gi|7267909|emb|CAB78251.1| putative DNA-binding protein [Arabidopsis thaliana]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/367 (60%), Positives = 256/367 (69%), Gaps = 55/367 (14%)

Query: 1   MEATATREAVTSATT---GVTVVGSDAPSEFHIAPRSENPTLT---------------SA 42
           ME+T   EAV S T    G+TVV SDAPS+FH+A RSE+   +               +A
Sbjct: 1   MESTG--EAVRSTTGNDGGITVVRSDAPSDFHVAQRSESSNQSPTSVTPPPPQPSSHHTA 58

Query: 43  PPPPATQPPAPAPPPALP-------LKKKRGRPRKYGPDGTVTMALSPKPISSAA----- 90
           PPP            A         +KKKRGRPRKYGPDGTV +ALSPKPISSA      
Sbjct: 59  PPPLQISTVTTTTTTAAMEGISGGLMKKKRGRPRKYGPDGTV-VALSPKPISSAPAPSHL 117

Query: 91  --PSPPVIDFSA-EKPRKVKPASSFSKSKY--EVENIGEWVACSVGANFTPHIITVNTGE 145
             PS  VIDFSA EK  KVKP +SF+++KY  +VEN+GEW  CSVG NFTPHIITVNTGE
Sbjct: 118 PPPSSHVIDFSASEKRSKVKPTNSFNRTKYHHQVENLGEWAPCSVGGNFTPHIITVNTGE 177

Query: 146 -------------DVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRF 192
                        DVTMKIISFSQQGPR+IC+LSANGVISSVTLRQPDSSGGTLTYEGRF
Sbjct: 178 VISSEFFFRSRHQDVTMKIISFSQQGPRSICVLSANGVISSVTLRQPDSSGGTLTYEGRF 237

Query: 193 EILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAG 252
           EILSLSGSFMP+DSGGTRSR+GGMSVSLASPDGRVVGGG+AGLLVAASPVQVVVGSFLAG
Sbjct: 238 EILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGGLAGLLVAASPVQVVVGSFLAG 297

Query: 253 NQHEQKHKKQKNEPISIATPTAAIPISS-ADPKGSLTTSTF--RGDGW-SSLPSDSRNKP 308
             H+ +  K+      +++PTAAIPISS AD +   + S+     + W +SL SD RNK 
Sbjct: 298 TDHQDQKPKKNKHDFMLSSPTAAIPISSAADHRTIHSVSSLPVNNNTWQTSLASDPRNKH 357

Query: 309 TDINASL 315
           TDIN ++
Sbjct: 358 TDINVNV 364

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.694	0.620	0.565	1.4e-60
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.562	0.535	0.562	2.1e-54
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.459	0.459	0.591	3.7e-46
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.443	0.349	0.560	1.7e-34
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.386	0.293	0.585	3.7e-32
TAIR|locus:2167988	404	AT5G62260 [Arabidopsis thalian	0.393	0.309	0.568	2e-31
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.449	0.407	0.493	1.3e-29
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.471	0.431	0.440	1.3e-29
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.471	0.423	0.434	2.4e-28
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.481	0.404	0.403	6.6e-26

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
 Identities = 129/228 (56%), Positives = 145/228 (63%)

Query:    95 VIDFSA-EKPRKVKPASSFSKSKY--EVENIGEWVACSVGANFTPHIITVNTGEDVTMKI 151
             VIDFSA EK  KVKP +SF+++KY  +VEN+GEW  CSVG NFTPHIITVNTGEDVTMKI
Sbjct:   128 VIDFSASEKRSKVKPTNSFNRTKYHHQVENLGEWAPCSVGGNFTPHIITVNTGEDVTMKI 187

Query:   152 ISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPXXXXXXXX 211
             ISFSQQGPR+IC+LSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMP        
Sbjct:   188 ISFSQQGPRSICVLSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNDSGGTRS 247

Query:   212 XXXXXXXXLASPDGRXXXXXXXXXXXXXSPVQVVVGSFLAGXXXXXXXXXXXXXXXXXXX 271
                     LASPDGR             SPVQVVVGSFLAG                   
Sbjct:   248 RTGGMSVSLASPDGRVVGGGLAGLLVAASPVQVVVGSFLAGTDHQDQKPKKNKHDFMLSS 307

Query:   272 XXXXX-XXXXXDPKG--SLTTSTFRGDGW-SSLPSDSRNKPTDINASL 315
                        D +   S+++     + W +SL SD RNK TDIN ++
Sbjct:   308 PTAAIPISSAADHRTIHSVSSLPVNNNTWQTSLASDPRNKHTDINVNV 355

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.1e-54, Sum P(3) = 2.1e-54
 Identities = 104/185 (56%), Positives = 116/185 (62%)

Query:    74 DGTVTMXXXXXXXXXXXXXXXVIDFS--AEKPRKVKPA----SSFSKSKYEVENIGEWVA 127
             DG                   VIDFS  +EK  K+KPA    SSF + KY+VEN+GEW  
Sbjct:    84 DGAAVTLSPNPISSAAPTTSHVIDFSTTSEKRGKMKPATPTPSSFIRPKYQVENLGEWSP 143

Query:   128 CSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLT 187
              S  ANFTPHIITVN GEDVT +IISFSQQG  AIC+L ANGV+SSVTLRQPDSSGGTLT
Sbjct:   144 SSAAANFTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSSVTLRQPDSSGGTLT 203

Query:   188 YEGRFEILSLSGSFMPXXXXXXXXXXXXXXXXLASPDGRXXXXXXXXXXXXXSPVQVVVG 247
             YEGRFEILSLSG+FMP                LASPDGR             +P+QVVVG
Sbjct:   204 YEGRFEILSLSGTFMPSDSDGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAATPIQVVVG 263

Query:   248 SFLAG 252
             +FL G
Sbjct:   264 TFLGG 268

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 3.7e-46, Sum P(3) = 3.7e-46
 Identities = 87/147 (59%), Positives = 98/147 (66%)

Query:   104 RKVKPASSFSKSKYEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAIC 163
             +K+     F  S  E   +G  V   VG+NFTPH+ITVNTGED+TM+IISFSQQGPRAIC
Sbjct:    94 KKMHKTIGFHSSG-ERFGVGGGVGGGVGSNFTPHVITVNTGEDITMRIISFSQQGPRAIC 152

Query:   164 ILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPXXXXXXXXXXXXXXXXLASP 223
             ILSANGVIS+VTLRQPDS GGTLTYEGRFEILSLSGSFM                 LA P
Sbjct:   153 ILSANGVISNVTLRQPDSCGGTLTYEGRFEILSLSGSFMETENQGSKGRSGGMSVSLAGP 212

Query:   224 DGRXXXXXXXXXXXXXSPVQVVVGSFL 250
             DGR             +P+QVVVGSF+
Sbjct:   213 DGRVVGGGVAGLLIAATPIQVVVGSFI 239

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 79/141 (56%), Positives = 91/141 (64%)

Query:   112 FSKSKYEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVI 171
             F +S  +    G   A  VGANFTPH++ VN GEDVTMKI++FSQQG RAICILSANG I
Sbjct:   144 FDRSPVDTNLAGVGTADFVGANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPI 203

Query:   172 SSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPXXXXXXXXXXXXXXXXLASPDGRXXXXX 231
             S+VTLRQ  +SGGTLTYEGRFEILSL+GSFM                 LA PDGR     
Sbjct:   204 SNVTLRQSMTSGGTLTYEGRFEILSLTGSFMQNDSGGTRSRAGGMSVCLAGPDGRVFGGG 263

Query:   232 XXXXXXXXSPVQVVVGSFLAG 252
                      PVQV+VG+F+AG
Sbjct:   264 LAGLFLAAGPVQVMVGTFIAG 284

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 72/123 (58%), Positives = 83/123 (67%)

Query:   130 VGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYE 189
             V  +FTPH++TVN GEDVTMKI++FSQQG RAICILSANG IS+VTLRQ  +SGGTLTYE
Sbjct:   174 VSPSFTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYE 233

Query:   190 GRFEILSLSGSFMPXXXXXXXXXXXXXXXXLASPDGRXXXXXXXXXXXXXSPVQVVVGSF 249
             G FEILSL+GSF+P                LA  DGR              PVQV+VGSF
Sbjct:   234 GHFEILSLTGSFIPSESGGTRSRAGGMSVSLAGQDGRVFGGGLAGLFIAAGPVQVMVGSF 293

Query:   250 LAG 252
             +AG
Sbjct:   294 IAG 296

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2167988 AT5G62260 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 71/125 (56%), Positives = 82/125 (65%)

Query:   126 VACSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGT 185
             ++C VGANFT H  TVN GEDVTMK++ +SQQG RAICILSA G IS+VTL QP ++GGT
Sbjct:   152 LSCYVGANFTTHQFTVNGGEDVTMKVMPYSQQGSRAICILSATGSISNVTLGQPTNAGGT 211

Query:   186 LTYEGRFEILSLSGSFMPXXXXXXXXXXXXXXXXLASPDGRXXXXXXXXXXXXXSPVQVV 245
             LTYEGRFEILSLSGSFMP                LA P+G               PVQVV
Sbjct:   212 LTYEGRFEILSLSGSFMPTENGGTKGRAGGMSISLAGPNGNIFGGGLAGMLIAAGPVQVV 271

Query:   246 VGSFL 250
             +GSF+
Sbjct:   272 MGSFI 276

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 74/150 (49%), Positives = 92/150 (61%)

Query:   101 EKPRKVKPASSFSKSKYEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQGPR 160
             EK R   P SS SK + +++ +G     S G  FTPH++TV  GEDV+ KI++ +  GPR
Sbjct:   137 EKKRGRPPGSS-SK-RLKLQALG-----STGIGFTPHVLTVLAGEDVSSKIMALTHNGPR 189

Query:   161 AICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPXXXXXXXXXXXXXXXXL 220
             A+C+LSANG IS+VTLRQ  +SGGT+TYEGRFEILSLSGSF                  L
Sbjct:   190 AVCVLSANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFHLLENNGQRSRTGGLSVSL 249

Query:   221 ASPDGRXXXXXXXXXXXXXSPVQVVVGSFL 250
             +SPDG              SPVQ+VVGSFL
Sbjct:   250 SSPDGNVLGGSVAGLLIAASPVQIVVGSFL 279

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 67/152 (44%), Positives = 93/152 (61%)

Query:    99 SAEKPRKVKPASSFSKSKYEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQG 158
             ++ K  + +P  S  K +  + ++GE +  S G +FTPH+I V+ GED+  K+I+FSQQG
Sbjct:   129 NSNKRGRGRPPGSGKKQR--MASVGELMPSSSGMSFTPHVIAVSIGEDIASKVIAFSQQG 186

Query:   159 PRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPXXXXXXXXXXXXXXX 218
             PRAIC+LSA+G +S+ TL QP +S G + YEGRFEIL+LS S++                
Sbjct:   187 PRAICVLSASGAVSTATLIQPSASPGAIKYEGRFEILALSTSYIVATDGSFRNRTGNLSV 246

Query:   219 XLASPDGRXXXXXXXXXXXXXSPVQVVVGSFL 250
              LASPDGR             SPVQV+VGSF+
Sbjct:   247 SLASPDGRVIGGAIGGPLIAASPVQVIVGSFI 278

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 66/152 (43%), Positives = 90/152 (59%)

Query:    99 SAEKPRKVKPASSFSKSKYEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQG 158
             ++ K  + +P  S  K +  + +IGE +  S G +FTPH+I V+ GED+  K+ISFS QG
Sbjct:   131 NSNKRGRGRPPGSGKKQR--LSSIGEMMPSSTGMSFTPHVIVVSIGEDIASKVISFSHQG 188

Query:   159 PRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPXXXXXXXXXXXXXXX 218
             PRAIC+LSA+G +S+ TL QP  S GT+ YEG FE++SLS S++                
Sbjct:   189 PRAICVLSASGAVSTATLLQPAPSHGTIIYEGLFELISLSTSYLNTTDNDYPNRTGSLAV 248

Query:   219 XLASPDGRXXXXXXXXXXXXXSPVQVVVGSFL 250
              LASPDGR             S VQV+VGSF+
Sbjct:   249 SLASPDGRVIGGGIGGPLIAASQVQVIVGSFI 280

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 63/156 (40%), Positives = 90/156 (57%)

Query:    97 DFSAEKPRKVKPASSFSKSKYEVENIGEWVACSVGANFTPHIITVNTGEDVTMKIISFSQ 156
             D +A K  + +P  +  K +  + N+GEW+  S G  F PH+I+V +GED+  K++SFSQ
Sbjct:   142 DPNAPKRARGRPPGTGRKQR--LANLGEWMNTSAGLAFAPHVISVGSGEDIVSKVLSFSQ 199

Query:   157 QGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPXXXXXXXXXXXXX 216
             + PRA+CI+S  G +SSVTLR+P S+  +LT+EGRFEILSL GS++              
Sbjct:   200 KRPRALCIMSGTGTVSSVTLREPASTTPSLTFEGRFEILSLGGSYLVNEEGGSKSRTGGL 259

Query:   217 XXXLASPDGRXXXXXXXXXXXXXSPVQVVVGSFLAG 252
                L+ P+G              S VQVV  SF+ G
Sbjct:   260 SVSLSGPEGHVIGGGIGMLIAA-SLVQVVACSFVYG 294

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001020001 SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (260 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	318
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	4e-40
cd11378	113	cd11378, DUF296, Domain of unknown function found	5e-36
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	5e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.003
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.004

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  136 bits (344), Expect = 4e-40
 Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 9/123 (7%)

Query: 134 FTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPD---SSGGTLTYEG 190
             PH++ +  GED+   + +F++Q      +LS  G +S+VTLRQPD    S G +T EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 191 RFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVA-GLLVAASPVQVVVGSF 249
           RFEILSLSG+  P         SG + VSLA PDG+VVGG +A G + A   V V   SF
Sbjct: 61  RFEILSLSGTISPGG-----KPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSF 115

Query: 250 LAG 252
              
Sbjct: 116 ENA 118

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  125 bits (316), Expect = 5e-36
 Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 8/118 (6%)

Query: 135 TPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDS---SGGTLTYEGR 191
            P ++ +  GED+   + +F+++      +LS  G +S+ TLR PD       T+T+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 192 FEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSF 249
            EILSLSG+  P D       SG + VSLA  DGRV+GG + G LV A  V+VV+G  
Sbjct: 61  LEILSLSGNISPDDGK----PSGHLHVSLADSDGRVIGGHLLGALV-AGTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 144 GEDVTMKIISFSQQGPRAICILSANGVISSVTLR---QPDSSGGTLTYEGRFEILSLSGS 200
           GED+  ++ +F++Q      +++A G +    LR     +    T+      E+LSL G+
Sbjct: 19  GEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGN 78

Query: 201 FMPSDSGGTRSRSGGMSVSLASPDGRVVGG 230
               D          +  +L   +G  +GG
Sbjct: 79  IALDDP------FVHLHAALGDENGITLGG 102

Length = 141

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 31  APRSENPTLTSAPPPPATQPPAPAPPPALPLKKKRGRPRKYGPDGTVTMALSPKPISSAA 90
           AP ++     +    PA    APA PPA         P    P      A +   ++ A 
Sbjct: 392 APVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAP 451

Query: 91  PSPPVIDFSAEKPRKVKP 108
           P+    +  A  P +V P
Sbjct: 452 PAQAAPETVA-IPVRVAP 468

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 3/93 (3%)

Query: 5   ATREAVTSATTGVTVVGSDAPSEFHIAPRSENPTLTSAPPPPA---TQPPAPAPPPALPL 61
           A    V +         + +P     AP +      +A  PP     +   P P P  P+
Sbjct: 358 ALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPV 417

Query: 62  KKKRGRPRKYGPDGTVTMALSPKPISSAAPSPP 94
                   +  P  T       +      P+PP
Sbjct: 418 APPVPHTPESAPKLTRAAIPVDEKPKYTPPAPP 450

Length = 585

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.95
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.92
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.39
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.3
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	83.46

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.95  E-value=1.3e-28  Score=205.64  Aligned_cols=111  Identities=32%  Similarity=0.469  Sum_probs=98.9

Q ss_pred             ceeEEEEecCCCcHHHHHHHHHHcCCccEEEEEeeceeeEEEEecCCC--CCCceeeecceeEEEeeeccccCCCCCCCC
Q 020999          134 FTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDS--SGGTLTYEGRFEILSLSGSFMPSDSGGTRS  211 (318)
Q Consensus       134 f~phVIrV~~GEDIve~I~~Faq~~~raicILSaiGaVsnVTLrq~~~--~~~~vt~eG~FEILSLSGsis~~e~g~~~~  211 (318)
                      ||+|++||++||||+++|++||+++.+..|+++++|+|++|+|++++.  ....++|+|+|||+||+|||...++    +
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g----~   76 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG----K   76 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT----E
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC----C
Confidence            789999999999999999999999889899999999999999999954  3468899999999999999998444    5


Q ss_pred             CCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEc
Q 020999          212 RSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSF  249 (318)
Q Consensus       212 ~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF  249 (318)
                      ++.|||++|++.||+|+||||..+.+ ..++||+|..+
T Consensus        77 ~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~  113 (120)
T PF03479_consen   77 PFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVITEL  113 (120)
T ss_dssp             EEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEE
T ss_pred             CcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEe
Confidence            89999999999999999999996666 67999999984

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.92  E-value=2.4e-24  Score=186.52  Aligned_cols=121  Identities=21%  Similarity=0.306  Sum_probs=108.4

Q ss_pred             CCceeEEEEecCCCcHHHHHHHHHHcCCccEEEEEeeceeeEEEEecCCCCC---CceeeecceeEEEeeeccccCCCCC
Q 020999          132 ANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSG---GTLTYEGRFEILSLSGSFMPSDSGG  208 (318)
Q Consensus       132 ~~f~phVIrV~~GEDIve~I~~Faq~~~raicILSaiGaVsnVTLrq~~~~~---~~vt~eG~FEILSLSGsis~~e~g~  208 (318)
                      ..-+.+++||++|||+++.|.+||+++.+..++++|+|++++++|++++.++   .++++.|+||||||.|||..++   
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---   83 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---   83 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence            4567899999999999999999999999988999999999999999999654   5899999999999999999877   


Q ss_pred             CCCCCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhccc
Q 020999          209 TRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKHK  260 (318)
Q Consensus       209 ~~~~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~~  260 (318)
                         |+.|||++|++++|+++||||.++++.. ++||+|.+ +......|++.
T Consensus        84 ---p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~e-l~~~~~~R~~d  130 (141)
T COG1661          84 ---PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRE-LPGELFRREFD  130 (141)
T ss_pred             ---CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEE-ccccceeEecC
Confidence               6889999999999999999999988765 99999999 56555666554

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.39  E-value=0.0011  Score=36.50  Aligned_cols=12  Identities=67%  Similarity=1.085  Sum_probs=4.4

Q ss_pred             ccccCCCCCCCC
Q 020999           62 KKKRGRPRKYGP   73 (318)
Q Consensus        62 KkKRGRPRKY~~   73 (318)
                      +|+||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            689999999864

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.30  E-value=0.0019  Score=41.73  Aligned_cols=15  Identities=60%  Similarity=0.811  Sum_probs=13.1

Q ss_pred             ccccCCCCCCCCCCC
Q 020999           62 KKKRGRPRKYGPDGT   76 (318)
Q Consensus        62 KkKRGRPRKY~~dg~   76 (318)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999988764

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=83.46  E-value=0.41  Score=44.19  Aligned_cols=17  Identities=59%  Similarity=0.913  Sum_probs=12.5

Q ss_pred             cccccccCCCCCC-CCCC
Q 020999           59 LPLKKKRGRPRKY-GPDG   75 (318)
Q Consensus        59 ~~~KkKRGRPRKY-~~dg   75 (318)
                      ...|||||||||- |-.|
T Consensus        65 sdAKRKRGRPRKKsggsg   82 (219)
T PF14621_consen   65 SDAKRKRGRPRKKSGGSG   82 (219)
T ss_pred             chhhhhcCCCccCCCCCc
Confidence            4689999999964 4433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	6e-29
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	1e-27
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	3e-18
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	1e-08
3htn_A	149	Putative DNA binding protein; DUF269 family protei	1e-08
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	2e-08

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  107 bits (269), Expect = 6e-29
 Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 10/128 (7%)

Query: 123 GEWVACSVGANFTPHIITVNTGEDVTMKIISFSQQ-GPRAICILSANGVISSVTLRQPDS 181
              V+    +    + + +  G++V  ++ +F QQ   RA  I    G ++ V LR    
Sbjct: 7   SMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ 66

Query: 182 SGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASP 241
              T +  G FE++SL+G+   +           + ++++ P G ++GG +       + 
Sbjct: 67  -EATTSLTGTFEVISLNGTLELTGEH--------LHLAVSDPYGVMLGGHMMPGCTVRTT 117

Query: 242 VQVVVGSF 249
           +++V+G  
Sbjct: 118 LELVIGEL 125

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score =  103 bits (259), Expect = 1e-27
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 136 PHIITVNTGEDVTMKIISF-SQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEI 194
              + +  G D+  +I+    Q    A  I S  G +S++ +R  DS   TL     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADS-VSTLQVSAPFEI 62

Query: 195 LSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSF 249
           LSLSG+               + +++A   GRV GG +    +  +  ++++  +
Sbjct: 63  LSLSGTLTYQHCH--------LHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY 109

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 78.9 bits (194), Expect = 3e-18
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 7/121 (5%)

Query: 129 SVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGG---T 185
            + +    ++  V  GE++   I +F ++      I++  G + +  +            
Sbjct: 4   GMFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKV 63

Query: 186 LTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVV 245
           +  +G +E++SL G+    D            VSL + +G V GG +    V  + + + 
Sbjct: 64  IPLKGSYELISLIGNVSLKDGE----PFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ 119

Query: 246 V 246
            
Sbjct: 120 E 120

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 137 HIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGG---TLTYEGRFE 193
            ++ ++ G+D+  +I  F ++       +SA G + S  +   D               E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 194 ILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVV 246
           ILSLSG+    DS         + V L   DG V GG +    V A  V V+ 
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP 119

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 17/116 (14%), Positives = 47/116 (40%), Gaps = 8/116 (6%)

Query: 137 HIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLR---QPDSSGGTLTYEGRFE 193
           +I+++N   ++   + +F ++       ++  G I  +TLR       +    T+  + E
Sbjct: 18  YIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQME 77

Query: 194 ILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSF 249
           I +L+G+    +          + +++   D   + G +   +   +  + VV  +
Sbjct: 78  ISNLTGNISSMNEQ----VYLHLHITVGRSDYSALAGHLLSAIQNGA-GEFVVEDY 128

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 6/117 (5%)

Query: 135 TPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGT--LTYEGRF 192
           T +++ +  G++V   +   ++            G +S  T    D              
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 193 EILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSF 249
           E+ +++GS    +       S     ++     +  GG + GL V     ++ V  +
Sbjct: 73  EMANMTGSIAWKEGK----PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.94
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.94
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.94
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.94
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.93
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.91
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	96.37

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.94  E-value=1.2e-26  Score=197.88  Aligned_cols=116  Identities=25%  Similarity=0.384  Sum_probs=102.2

Q ss_pred             ceeEEEEecCCCcHHHHHHHHHHc-CCccEEEEEeeceeeEEEEecCCCCCCceeeecceeEEEeeeccccCCCCCCCCC
Q 020999          134 FTPHIITVNTGEDVTMKIISFSQQ-GPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSR  212 (318)
Q Consensus       134 f~phVIrV~~GEDIve~I~~Faq~-~~raicILSaiGaVsnVTLrq~~~~~~~vt~eG~FEILSLSGsis~~e~g~~~~~  212 (318)
                      |++|++||++||||+++|.+||++ +.+++||++++|++++++|++++... +++|+|+|||+||+|||+++        
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~--------   72 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ--------   72 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS--------
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC--------
Confidence            789999999999999999999976 55578999999999999999999864 78899999999999999985        


Q ss_pred             CCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999          213 SGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH  259 (318)
Q Consensus       213 ~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~  259 (318)
                      ..|||++|+|.||+++||||.+++++..++||+|.+| .+..++|++
T Consensus        73 ~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~-~~~~~~R~~  118 (142)
T 2p6y_A           73 HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY-PQHHFTREF  118 (142)
T ss_dssp             CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEEC-TTEEEEEEE
T ss_pred             CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEc-cCCeEEEee
Confidence            2599999999999999999998777789999999995 444566655

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.94  E-value=1.7e-27  Score=202.71  Aligned_cols=118  Identities=19%  Similarity=0.285  Sum_probs=104.0

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHcCCccEEEEEeeceeeEEEEecCCCCC---CceeeecceeEEEeeeccccCCCCCCCC
Q 020999          135 TPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSG---GTLTYEGRFEILSLSGSFMPSDSGGTRS  211 (318)
Q Consensus       135 ~phVIrV~~GEDIve~I~~Faq~~~raicILSaiGaVsnVTLrq~~~~~---~~vt~eG~FEILSLSGsis~~e~g~~~~  211 (318)
                      ++|++||++||||+++|++||+++.+..|+++++|++++|+|++++...   ..++|+|+|||+||+|||++.++    +
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g----~   85 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG----E   85 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC----C
Confidence            6999999999999999999998866666667999999999999998764   36889999999999999999755    4


Q ss_pred             CCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999          212 RSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH  259 (318)
Q Consensus       212 ~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~  259 (318)
                      ++.|||++|+|.||+|+||||.+++ +. ++||+|.+| .+..++|++
T Consensus        86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~-~~~~~~R~~  130 (143)
T 2dt4_A           86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQEL-KGEKIERKP  130 (143)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEE-EESCCEEBC
T ss_pred             ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEc-CCCeEEEeC
Confidence            8999999999999999999999888 66 999999996 444577766

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.94  E-value=1.4e-26  Score=200.01  Aligned_cols=120  Identities=21%  Similarity=0.370  Sum_probs=106.4

Q ss_pred             CCCCceeEEEEecCCCcHHHHHHHHHHc-CCccEEEEEeeceeeEEEEecCCCCCCceeeecceeEEEeeeccccCCCCC
Q 020999          130 VGANFTPHIITVNTGEDVTMKIISFSQQ-GPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSGG  208 (318)
Q Consensus       130 ~g~~f~phVIrV~~GEDIve~I~~Faq~-~~raicILSaiGaVsnVTLrq~~~~~~~vt~eG~FEILSLSGsis~~e~g~  208 (318)
                      ....+++|++||++||||+++|.+||++ +.+++||++++|++++++|||++... .++|+|+|||+||+|+|+++    
T Consensus        14 ~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~----   88 (154)
T 2hx0_A           14 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT----   88 (154)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT----
T ss_pred             CCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC----
Confidence            5678999999999999999999999965 66688999999999999999999874 78899999999999999985    


Q ss_pred             CCCCCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999          209 TRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH  259 (318)
Q Consensus       209 ~~~~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~  259 (318)
                          ..|||++|++.||+|+||||.+++++..++||+|.+| .+..++|++
T Consensus        89 ----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~-~~~~~~R~~  134 (154)
T 2hx0_A           89 ----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL-PALTFSRQP  134 (154)
T ss_dssp             ----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC-TTEEEEEEE
T ss_pred             ----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEc-cCceEEEec
Confidence                2599999999999999999998777778999999985 444566654

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.94  E-value=5.4e-27  Score=201.69  Aligned_cols=118  Identities=14%  Similarity=0.236  Sum_probs=104.4

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHcCCccEEEEEeeceeeEEEEecCCCCC---CceeeecceeEEEeeeccccCCCCCCCC
Q 020999          135 TPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSG---GTLTYEGRFEILSLSGSFMPSDSGGTRS  211 (318)
Q Consensus       135 ~phVIrV~~GEDIve~I~~Faq~~~raicILSaiGaVsnVTLrq~~~~~---~~vt~eG~FEILSLSGsis~~e~g~~~~  211 (318)
                      +.|++||++||||+++|.+||+++.+..|+++++|++++|+|++++...   ..++|+|+|||+||+|||++.++    +
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~   91 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q   91 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence            6999999999999999999998888877777999999999999998753   37899999999999999999755    4


Q ss_pred             CCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999          212 RSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH  259 (318)
Q Consensus       212 ~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~  259 (318)
                      ++.|||++|+|.||+|+||||..+ ++..++||+|.++. + .++|++
T Consensus        92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~-~-~~~R~~  136 (149)
T 3htn_A           92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYS-E-RISRTY  136 (149)
T ss_dssp             EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECC-S-CCEEEE
T ss_pred             ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcC-C-eeEEee
Confidence            899999999999999999999987 67789999999963 3 455544

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.93  E-value=1.1e-26  Score=198.44  Aligned_cols=117  Identities=26%  Similarity=0.289  Sum_probs=102.1

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHcCCccEEEEEeeceeeEEEEecCCCCC---CceeeecceeEEEeeeccccCCCCCCCC
Q 020999          135 TPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSG---GTLTYEGRFEILSLSGSFMPSDSGGTRS  211 (318)
Q Consensus       135 ~phVIrV~~GEDIve~I~~Faq~~~raicILSaiGaVsnVTLrq~~~~~---~~vt~eG~FEILSLSGsis~~e~g~~~~  211 (318)
                      ++|++||++||||+++|.+||+++.+..|+++++|+|++++|++++...   ..++++|+|||+||+|||++.++    +
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg----~   85 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS----K   85 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC----C
Confidence            6999999999999999999998766655556999999999999998765   37889999999999999999655    4


Q ss_pred             CCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999          212 RSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH  259 (318)
Q Consensus       212 ~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~  259 (318)
                      ++.|||++|+ .||+|+||||.+++|  .|+||+|.+|. +..++|++
T Consensus        86 p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~-~~~~~R~~  129 (146)
T 2h6l_A           86 PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLS-GEAPERAF  129 (146)
T ss_dssp             EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECB-SCCCBEEE
T ss_pred             ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcC-CCcEEEeE
Confidence            8999999999 999999999999884  69999999964 44566655

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.91  E-value=3.8e-24  Score=183.43  Aligned_cols=118  Identities=16%  Similarity=0.219  Sum_probs=102.1

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHcCCccEEEEEeeceeeEEEEecCCCCC---CceeeecceeEEEeeeccccCCCCCCCC
Q 020999          135 TPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSG---GTLTYEGRFEILSLSGSFMPSDSGGTRS  211 (318)
Q Consensus       135 ~phVIrV~~GEDIve~I~~Faq~~~raicILSaiGaVsnVTLrq~~~~~---~~vt~eG~FEILSLSGsis~~e~g~~~~  211 (318)
                      +.+++||++||||+++|.+||+++.+..++++++|++++++|++++...   ...+++ ++||+||+|||++.++    +
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~   87 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K   87 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence            4699999999999999999999988888888999999999999998754   256788 8999999999998665    5


Q ss_pred             CCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999          212 RSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH  259 (318)
Q Consensus       212 ~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~  259 (318)
                      ++.|||++|+|.||+++||||..+.|...|+||+|..+  +..+.|++
T Consensus        88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~--~~~~~R~~  133 (147)
T 3hwu_A           88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY--PQRLDRFV  133 (147)
T ss_dssp             EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEE--SSCCBEEE
T ss_pred             ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEc--CCeEEEEE
Confidence            89999999999999999999998854435999999984  33566554

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=96.37  E-value=0.0015  Score=40.96  Aligned_cols=15  Identities=27%  Similarity=0.313  Sum_probs=13.7

Q ss_pred             CCCCCCCCCCcCCCC
Q 020999          101 EKPRKVKPASSFSKS  115 (318)
Q Consensus       101 ~kr~RGRP~GS~~K~  115 (318)
                      .||+||||.|||||.
T Consensus         4 pKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            4 PKRPRGRPKGSKNKG   18 (26)
T ss_dssp             CCCCSSCCTTCCCCS
T ss_pred             CcCCCCCcCcccccC
Confidence            699999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	318
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	2e-24
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	5e-17

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 94.2 bits (234), Expect = 2e-24
 Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 137 HIITVNTGEDVTMKIISFS-QQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEIL 195
           + + +  G++V  ++ +F  Q   RA  I    G ++ V LR       T +  G FE++
Sbjct: 9   YALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVI 67

Query: 196 SLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQH 255
           SL+G+   +           + ++++ P G ++GG +       + +++V+G        
Sbjct: 68  SLNGTLELTGEH--------LHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL-PALTF 118

Query: 256 EQKH 259
            ++ 
Sbjct: 119 SRQP 122

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 74.2 bits (182), Expect = 5e-17
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 137 HIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLR---QPDSSGGTLTYEGRFE 193
            ++ ++ G+D+  +I  F ++       +SA G + S  +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 194 ILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVV 246
           ILSLSG+    DS         + V L   DG V GG +    V A  V V+ 
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.95
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.91

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=1.6e-27  Score=200.30  Aligned_cols=119  Identities=20%  Similarity=0.376  Sum_probs=107.4

Q ss_pred             CCCceeEEEEecCCCcHHHHHHHHHH-cCCccEEEEEeeceeeEEEEecCCCCCCceeeecceeEEEeeeccccCCCCCC
Q 020999          131 GANFTPHIITVNTGEDVTMKIISFSQ-QGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGT  209 (318)
Q Consensus       131 g~~f~phVIrV~~GEDIve~I~~Faq-~~~raicILSaiGaVsnVTLrq~~~~~~~vt~eG~FEILSLSGsis~~e~g~~  209 (318)
                      ++..|.|++||++||||+++|++||+ ++.+++||++++|++++|+|++|+.. ....++|+|||+||+|||...+.   
T Consensus         3 ~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~-~~~~~~g~~Ei~sl~G~I~~~~~---   78 (136)
T d2hx0a1           3 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELTGE---   78 (136)
T ss_dssp             CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETTEE---
T ss_pred             CCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCC-CcEEecCcEEEEEEEEEeccCCC---
Confidence            56789999999999999999999995 56678999999999999999999876 57789999999999999987664   


Q ss_pred             CCCCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999          210 RSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH  259 (318)
Q Consensus       210 ~~~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~  259 (318)
                           |||++|+|.||+++||||+++++++.++||+|.+| .+..++|++
T Consensus        79 -----HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l-~~~~~~R~~  122 (136)
T d2hx0a1          79 -----HLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL-PALTFSRQP  122 (136)
T ss_dssp             -----EEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC-TTEEEEEEE
T ss_pred             -----eEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEc-cCCceEEcc
Confidence                 99999999999999999999999999999999996 555666655

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=5.2e-25  Score=183.98  Aligned_cols=117  Identities=26%  Similarity=0.302  Sum_probs=102.4

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHcCCccEEEEEeeceeeEEEEecCCCCC---CceeeecceeEEEeeeccccCCCCCCCC
Q 020999          135 TPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSG---GTLTYEGRFEILSLSGSFMPSDSGGTRS  211 (318)
Q Consensus       135 ~phVIrV~~GEDIve~I~~Faq~~~raicILSaiGaVsnVTLrq~~~~~---~~vt~eG~FEILSLSGsis~~e~g~~~~  211 (318)
                      |.|+++|++||||+++|.+||+++.+..|+++++|++++++|++++...   ..+.++|+|||+||+|||...++    +
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g----~   85 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS----K   85 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCC----C
Confidence            7999999999999999999999988888999999999999999988764   36789999999999999998776    4


Q ss_pred             CCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999          212 RSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH  259 (318)
Q Consensus       212 ~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~  259 (318)
                      ++.|+|+++++ ||+++||||..+.+.  ++|+++.+| .+..++|++
T Consensus        86 p~~HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~-~~~~~~R~~  129 (138)
T d2h6la1          86 PFCHIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPL-SGEAPERAF  129 (138)
T ss_dssp             EEEEEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEEC-BSCCCBEEE
T ss_pred             cEEEEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEe-cCCceEEec
Confidence            89999999997 799999999987654  689999885 455555554