Citrus Sinensis ID: 021001

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MEPSQKVNMPRVDRIEPGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLPVDILRRTGGLPCKVRTVERVGFAISCCMTQKLHESVSAWDDIVHFQGFLKVFASTFLARY
ccccccccHHHHHccccccEEEEEccccccEEEEEEEEccccEEEEEEEEEEccccccccEEEEEEEEEEcccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccHHHHHHHcccccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccEEEEccccccEEcEEEEEcccccccccccccHHHHcccccccccccccccHHccEEEEEEEcccccccccccEEEHHHHHHHHHHHHHHcc
cccccccccccHHcccccEEEEEEcccccccEEEEEEEcccEEEEEccEEEEccccccccEEEEEEEEEccccccEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHccccccccccHHHcccccccccccEEEccccccccccccccccccccccccEEEccccccccccEccccEcHHHHHcccccccccccccccccccccccccEEEEEEEccccEEEEccccccHHHHHHccccccccccccHHHHHHEEEEcccccccccccccEEEccHHHHHHHHHHHHcc
mepsqkvnmprvdriepgyYLYATahwdnvdgcamfwKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVlynpnrgevklgqicFLSSRAQIVAekwgnipvvlagdfnitpqSAIYKFLSsselniksydrrdlsgqrschLVQVFEVKKEiinpfavmdrllpngwtdeeVKVATGNaqcylavhplklnssyasvkgsprtrgingeplatsyhskffgtVDYLWytkglvptrvldtlpvdilrrtgglpckvrtvERVGFAISCCMtqklhesvsAWDDIVHFQGFLKVFASTFLARY
mepsqkvnmprvdrIEPGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVLynpnrgevKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSydrrdlsgqrsCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLvptrvldtlpvdilrrtgglpckvrtVERVGFAISCCMTQKLHESVSAWDDIVHFQGFLKVFASTFLARY
MEPSQKVNMPRVDRIEPGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLPVDILRRTGGLPCKVRTVERVGFAISCCMTQKLHESVSAWDDIVHFQGFLKVFASTFLARY
************DRIEPGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCYLAVHPLKLNSSYAS*********INGEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLPVDILRRTGGLPCKVRTVERVGFAISCCMTQKLHESVSAWDDIVHFQGFLKVFASTFL***
*EPSQKVNMPRVDRIEPGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLPVDILRRTGGLPCKVRTVERVGFAISCC****************HFQGFLKVFASTFLARY
********MPRVDRIEPGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLPVDILRRTGGLPCKVRTVERVGFAISCCMTQKLHESVSAWDDIVHFQGFLKVFASTFLARY
*****KVNMPRVDRIEPGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLPVDILRRTGGLPCKVRTVERVGFAISCCMTQKLH*SVSAWDDIVHFQGFLKVFASTFLARY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEPSQKVNMPRVDRIEPGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLPVDILRRTGGLPCKVRTVERVGFAISCCMTQKLHESVSAWDDIVHFQGFLKVFASTFLARY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query318 2.2.26 [Sep-21-2011]
Q9LS39448 Carbon catabolite repress yes no 0.757 0.537 0.6 9e-86
Q0WKY2454 Carbon catabolite repress no no 0.757 0.530 0.494 9e-69
Q8VYU4 754 Carbon catabolite repress no no 0.405 0.171 0.423 2e-28
A6H7I3544 Protein angel homolog 2 O yes no 0.650 0.380 0.294 5e-14
Q8K1C0544 Protein angel homolog 2 O yes no 0.647 0.378 0.285 6e-14
Q0U7W4597 Glucose-repressible alcoh N/A no 0.594 0.316 0.241 1e-13
Q8VCU0667 Protein angel homolog 1 O no no 0.393 0.187 0.335 3e-13
B2RYM0667 Protein angel homolog 1 O yes no 0.393 0.187 0.335 3e-13
Q5VTE6544 Protein angel homolog 2 O no no 0.650 0.380 0.290 4e-13
Q9UNK9670 Protein angel homolog 1 O yes no 0.393 0.186 0.328 4e-13
>sp|Q9LS39|CCR4C_ARATH Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana GN=CCR4-3 PE=2 SV=2 Back     alignment and function desciption
 Score =  317 bits (811), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 147/245 (60%), Positives = 191/245 (77%), Gaps = 4/245 (1%)

Query: 28  DNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNT-KSRRVLVGNIHVLY 86
           DNVDGCAMFWKAD+F +LE+ +IEF +FG+R+NVAQL+  E+R + KSR++L+GNIHVLY
Sbjct: 188 DNVDGCAMFWKADRFGVLERENIEFSQFGMRDNVAQLAVLELRKSNKSRKILLGNIHVLY 247

Query: 87  NPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYD 146
           NPN+G+VKLGQ+  L S+A ++++KWG+IP+VL GDFN TP+S +Y FL+SSELN+  +D
Sbjct: 248 NPNQGDVKLGQVRSLCSKAHLLSKKWGDIPIVLCGDFNSTPKSPLYNFLASSELNVMEHD 307

Query: 147 RRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCYLAVHPLKL 206
           +++LSGQ++C   +V E   +  N          + WT EE++VATG    Y A HPLKL
Sbjct: 308 KKELSGQKNCRPTKVLETGSKSSNTITFS---FCSSWTKEEIRVATGQENSYWAAHPLKL 364

Query: 207 NSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLPVDILRRTG 266
           NSSYASVKGS  TR   GEPLATSYHSKF GTVDYLWY+ GL+P RVLDTLP+D+L +T 
Sbjct: 365 NSSYASVKGSANTRDSVGEPLATSYHSKFLGTVDYLWYSDGLLPARVLDTLPIDVLCKTK 424

Query: 267 GLPCK 271
           GLPC+
Sbjct: 425 GLPCQ 429
Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: 4
>sp|Q0WKY2|CCR4E_ARATH Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana GN=CCR4-5 PE=2 SV=2 Back     alignment and function description
>sp|Q8VYU4|CCR4F_ARATH Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2 Back     alignment and function description
>sp|A6H7I3|ANGE2_BOVIN Protein angel homolog 2 OS=Bos taurus GN=ANGEL2 PE=2 SV=1 Back     alignment and function description
>sp|Q8K1C0|ANGE2_MOUSE Protein angel homolog 2 OS=Mus musculus GN=Angel2 PE=2 SV=1 Back     alignment and function description
>sp|Q0U7W4|CCR4_PHANO Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=CCR4 PE=3 SV=2 Back     alignment and function description
>sp|Q8VCU0|ANGE1_MOUSE Protein angel homolog 1 OS=Mus musculus GN=Angel1 PE=2 SV=2 Back     alignment and function description
>sp|B2RYM0|ANGE1_RAT Protein angel homolog 1 OS=Rattus norvegicus GN=Angel1 PE=2 SV=2 Back     alignment and function description
>sp|Q5VTE6|ANGE2_HUMAN Protein angel homolog 2 OS=Homo sapiens GN=ANGEL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9UNK9|ANGE1_HUMAN Protein angel homolog 1 OS=Homo sapiens GN=ANGEL1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query318
359491427407 PREDICTED: carbon catabolite repressor p 0.767 0.599 0.758 1e-106
297734177 441 unnamed protein product [Vitis vinifera] 0.767 0.553 0.758 1e-106
255541810 440 conserved hypothetical protein [Ricinus 0.833 0.602 0.683 1e-101
357521079414 Carbon catabolite repressor protein-like 0.764 0.586 0.713 1e-100
356511339 435 PREDICTED: carbon catabolite repressor p 0.764 0.558 0.717 2e-98
449440927 426 PREDICTED: carbon catabolite repressor p 0.776 0.579 0.630 1e-90
449477468 421 PREDICTED: carbon catabolite repressor p 0.761 0.574 0.630 1e-89
297830504 435 hypothetical protein ARALYDRAFT_898218 [ 0.748 0.547 0.612 1e-86
334185440 449 carbon catabolite repressor protein 4-li 0.761 0.538 0.604 1e-84
11994114 445 unnamed protein product [Arabidopsis tha 0.748 0.534 0.6 4e-84
>gi|359491427|ref|XP_002275530.2| PREDICTED: carbon catabolite repressor protein 4 homolog 3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/244 (75%), Positives = 212/244 (86%)

Query: 28  DNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVLYN 87
           D VDGCAMFWKA+KFRLLE   IEFK++GLR+NVAQLS FEM   +SR++LVGNIHVLYN
Sbjct: 134 DTVDGCAMFWKAEKFRLLEGECIEFKQYGLRDNVAQLSLFEMCEDESRKLLVGNIHVLYN 193

Query: 88  PNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDR 147
           P+RG+VKLGQI FLSSRA I++EKWGN+PVVLAGDFN TPQSA+Y+FLSSSELNI  YDR
Sbjct: 194 PSRGDVKLGQIRFLSSRAHILSEKWGNVPVVLAGDFNSTPQSAMYQFLSSSELNIMLYDR 253

Query: 148 RDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCYLAVHPLKLN 207
           R+LSGQR+CH  QVF+V++EI + F +MDR L   WTDEEVKVATGNA C++ VHPLKL 
Sbjct: 254 RELSGQRNCHPAQVFDVEREISSSFILMDRFLKGCWTDEEVKVATGNADCHVVVHPLKLK 313

Query: 208 SSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLPVDILRRTGG 267
           SSYA+VK S RTRG NGEPLATSYHSKF GTVDYLWY+ G+VPTRVLDTLPVDILR  GG
Sbjct: 314 SSYATVKSSTRTRGFNGEPLATSYHSKFLGTVDYLWYSDGVVPTRVLDTLPVDILRGLGG 373

Query: 268 LPCK 271
           LPC+
Sbjct: 374 LPCR 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734177|emb|CBI15424.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255541810|ref|XP_002511969.1| conserved hypothetical protein [Ricinus communis] gi|223549149|gb|EEF50638.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357521079|ref|XP_003630828.1| Carbon catabolite repressor protein-like protein [Medicago truncatula] gi|355524850|gb|AET05304.1| Carbon catabolite repressor protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356511339|ref|XP_003524384.1| PREDICTED: carbon catabolite repressor protein 4 homolog 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449440927|ref|XP_004138235.1| PREDICTED: carbon catabolite repressor protein 4 homolog 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449477468|ref|XP_004155032.1| PREDICTED: carbon catabolite repressor protein 4 homolog 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297830504|ref|XP_002883134.1| hypothetical protein ARALYDRAFT_898218 [Arabidopsis lyrata subsp. lyrata] gi|297328974|gb|EFH59393.1| hypothetical protein ARALYDRAFT_898218 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334185440|ref|NP_001189925.1| carbon catabolite repressor protein 4-like 3 [Arabidopsis thaliana] gi|332642586|gb|AEE76107.1| carbon catabolite repressor protein 4-like 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|11994114|dbj|BAB01117.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query318
TAIR|locus:504956231454 AT1G73875 "AT1G73875" [Arabido 0.751 0.526 0.498 6.2e-62
TAIR|locus:2832132 754 AT5G11350 "AT5G11350" [Arabido 0.396 0.167 0.432 2.1e-45
ZFIN|ZDB-GENE-030131-6498569 angel2 "angel homolog 2 (Droso 0.663 0.370 0.271 1e-12
MGI|MGI:1196310544 Angel2 "angel homolog 2 (Droso 0.427 0.25 0.324 1.2e-12
MGI|MGI:1915987667 Angel1 "angel homolog 1 (Droso 0.386 0.184 0.340 3.4e-11
UNIPROTKB|F1NGS9569 PDE12 "Uncharacterized protein 0.317 0.177 0.288 1.4e-09
FB|FBgn0011725567 twin "twin" [Drosophila melano 0.257 0.144 0.263 1.1e-08
UNIPROTKB|Q6L8Q7609 PDE12 "2',5'-phosphodiesterase 0.358 0.187 0.264 1.4e-08
MGI|MGI:2443226608 Pde12 "phosphodiesterase 12" [ 0.358 0.187 0.264 1.9e-08
RGD|1310975608 Pde12 "phosphodiesterase 12" [ 0.358 0.187 0.256 1.9e-08
TAIR|locus:504956231 AT1G73875 "AT1G73875" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 125/251 (49%), Positives = 169/251 (67%)

Query:    31 DGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEM------------RNTKSRRVL 78
             DGCA+FWK + F LL+   IEF +FG+R NVAQL   EM            R++  RR++
Sbjct:   182 DGCAIFWKENLFELLDHQHIEFDKFGMRNNVAQLCVLEMNCEEDPKSKLRVRSSDPRRLV 241

Query:    79 VGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSS 138
             VGNIHVL+NP RG++KLGQ+     +A  ++++WGNIPV +AGD N TPQSAIY F++S+
Sbjct:   242 VGNIHVLFNPKRGDIKLGQVRLFLEKAYKLSQEWGNIPVAIAGDLNSTPQSAIYDFIASA 301

Query:   139 ELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCY 198
             +L+ + +DRR +SGQ      +         +  A +   L N W+ EE+++ATG  +  
Sbjct:   302 DLDTQLHDRRQISGQTEVEPKERSFRNHYAFSASASISGSLLNEWSQEELQLATGGQETT 361

Query:   199 LAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLP 258
                H LKLNS+Y+ V G+ RTR   GEPLAT+YHS+F GTVDY+W+TK LVP RVL+TLP
Sbjct:   362 HVQHQLKLNSAYSGVPGTYRTRDQRGEPLATTYHSRFLGTVDYIWHTKELVPVRVLETLP 421

Query:   259 VDILRRTGGLP 269
              D+LRRTGGLP
Sbjct:   422 ADVLRRTGGLP 432
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2832132 AT5G11350 "AT5G11350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6498 angel2 "angel homolog 2 (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1196310 Angel2 "angel homolog 2 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:1915987 Angel1 "angel homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NGS9 PDE12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0011725 twin "twin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q6L8Q7 PDE12 "2',5'-phosphodiesterase 12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443226 Pde12 "phosphodiesterase 12" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310975 Pde12 "phosphodiesterase 12" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017640001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (421 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
cd09097329 cd09097, Deadenylase_CCR4, C-terminal deadenylase 1e-27
PLN03144606 PLN03144, PLN03144, Carbon catabolite repressor pr 1e-14
cd10313350 cd10313, Deadenylase_CCR4a, C-terminal deadenylase 1e-12
cd09096280 cd09096, Deadenylase_nocturnin, C-terminal deadeny 3e-10
cd10312348 cd10312, Deadenylase_CCR4b, C-terminal deadenylase 6e-09
COG5239378 COG5239, CCR4, mRNA deadenylase, exonuclease subun 2e-06
cd09082348 cd09082, Deadenylase, C-terminal deadenylase domai 3e-05
cd09083252 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphata 1e-04
cd08372241 cd08372, EEP, Exonuclease-Endonuclease-Phosphatase 2e-04
>gnl|CDD|197331 cd09097, Deadenylase_CCR4, C-terminal deadenylase domain of CCR4 and related domains Back     alignment and domain information 
 Score =  109 bits (274), Expect = 1e-27
 Identities = 68/272 (25%), Positives = 107/272 (39%), Gaps = 81/272 (29%)

Query: 30  VDGCAMFWKADKFRLLEQTSIEFKEFGL-----------------RENVAQLSAFEMRNT 72
           VDGCA+F+K  KF+L+E+  IEF +  +                 ++N+A +   E R T
Sbjct: 90  VDGCAIFFKTSKFKLVEKHLIEFNQLAMANADAEGSEDMLNRVMTKDNIALIVVLEARET 149

Query: 73  -----KSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKW--------GNIPVVL 119
                K + ++V N H+ ++P   +VKL Q   L    + +AEK+         +IP+V+
Sbjct: 150 SYEGNKGQLLIVANTHIHWDPEFSDVKLVQTMMLLEELEKIAEKFSRYPYEDSADIPLVV 209

Query: 120 AGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLL 179
            GDFN  P S +Y+ LS+  +   S +  D                             L
Sbjct: 210 CGDFNSLPDSGVYELLSNGSV---SPNHPDFKEDP--------------------YGEYL 246

Query: 180 PNGWTDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTV 239
                     +           H  KL S+YA+           GE   T+Y   F G +
Sbjct: 247 TAS------GLT----------HSFKLKSAYAN----------LGELPFTNYTPDFKGVI 280

Query: 240 DYLWYTK-GLVPTRVLDTL-PVDILRRTGGLP 269
           DY++Y+   L    +L        L +  GLP
Sbjct: 281 DYIFYSADTLSVLGLLGPPDEDWYLNKVVGLP 312

This subfamily contains the C-terminal catalytic domain of the deadenylases, Saccharomyces cerevisiae Ccr4p and two vertebrate homologs (CCR4a and CCR4b), and related domains. CCR4 belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. CCR4 is the major deadenylase subunit of the CCR4-NOT transcription complex, which contains two deadenylase subunits and several noncatalytic subunits. The other deadenylase subunit, Caf1 (called Pop2 in yeast), is a DEDD-type protein and does not belong in this superfamily. Saccharomyces cerevisiae CCR4 (or Ccr4p) is a 3'-5' poly(A) RNA and ssDNA exonuclease. It is the catalytic subunit of the yeast mRNA deadenylase (Ccr4p/Pop2p/Not complex). This complex participates in various ways in mRNA metabolism, including transcription initiation and elongation, and mRNA degradation. Ccr4p degrades both poly(A) and single-stranded DNA. There are two vertebrate homologs of Ccr4p, CCR4a (also called CCR4-NOT transcription complex subunit 6 or CNOT6) and CCR4b (also called CNOT6-like or CNOT6L), which independently associate with other components to form distinct CCR4-NOT multisubunit complexes. The nuclease domain of CNOT6 and CNOT6L exhibits Mg2+-dependent deadenylase activity, with specificity for poly (A) RNA as substrate. CCR4a is a component of P-bodies and is necessary for foci formation. CCR4b regulates p27/Kip1 mRNA levels, thereby influencing cell cycle progression. They both contribute to the prevention of cell death by regulating insulin-like growth factor-binding protein 5. Length = 329
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information
>gnl|CDD|197340 cd10313, Deadenylase_CCR4a, C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6 Back     alignment and domain information
>gnl|CDD|197330 cd09096, Deadenylase_nocturnin, C-terminal deadenylase domain of nocturnin and related domains Back     alignment and domain information
>gnl|CDD|197339 cd10312, Deadenylase_CCR4b, C-terminal deadenylase domain of CCR4b, also known as CCR4-NOT transcription complex subunit 6-like Back     alignment and domain information
>gnl|CDD|227564 COG5239, CCR4, mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|197316 cd09082, Deadenylase, C-terminal deadenylase domain of CCR4, nocturnin, and related domains Back     alignment and domain information
>gnl|CDD|197317 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1 Back     alignment and domain information
>gnl|CDD|197306 cd08372, EEP, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 318
PLN03144606 Carbon catabolite repressor protein 4 homolog; Pro 100.0
KOG2338495 consensus Transcriptional effector CCR4-related pr 100.0
KOG0620361 consensus Glucose-repressible alcohol dehydrogenas 100.0
COG5239378 CCR4 mRNA deadenylase, exonuclease subunit and rel 100.0
COG3568259 ElsH Metal-dependent hydrolase [General function p 99.83
PRK11756268 exonuclease III; Provisional 99.8
TIGR03395283 sphingomy sphingomyelin phosphodiesterase. Members 99.74
PRK05421263 hypothetical protein; Provisional 99.74
PTZ00297 1452 pantothenate kinase; Provisional 99.7
KOG3873422 consensus Sphingomyelinase family protein [Signal 99.67
TIGR00195254 exoDNase_III exodeoxyribonuclease III. The model b 99.66
PRK13911250 exodeoxyribonuclease III; Provisional 99.55
COG0708261 XthA Exonuclease III [DNA replication, recombinati 99.55
TIGR00633255 xth exodeoxyribonuclease III (xth). This family is 99.54
PRK15251271 cytolethal distending toxin subunit CdtB; Provisio 99.41
smart00476276 DNaseIc deoxyribonuclease I. Deoxyribonuclease I c 99.3
KOG2756349 consensus Predicted Mg2+-dependent phosphodiestera 99.3
COG3021309 Uncharacterized protein conserved in bacteria [Fun 99.21
PF03372249 Exo_endo_phos: Endonuclease/Exonuclease/phosphatas 99.2
COG2374798 Predicted extracellular nuclease [General function 98.17
smart00128310 IPPc Inositol polyphosphate phosphatase, catalytic 97.85
PLN03191621 Type I inositol-1,4,5-trisphosphate 5-phosphatase 97.47
COG5239378 CCR4 mRNA deadenylase, exonuclease subunit and rel 97.47
PF14529119 Exo_endo_phos_2: Endonuclease-reverse transcriptas 97.43
KOG0566 1080 consensus Inositol-1,4,5-triphosphate 5-phosphatas 97.38
KOG1294335 consensus Apurinic/apyrimidinic endonuclease and r 96.71
PTZ00312356 inositol-1,4,5-triphosphate 5-phosphatase; Provisi 96.23
COG5411460 Phosphatidylinositol 5-phosphate phosphatase [Sign 94.95
KOG1976391 consensus Inositol polyphosphate 5-phosphatase, ty 94.06
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.9e-52  Score=413.22  Aligned_cols=247  Identities=29%  Similarity=0.443  Sum_probs=198.9

Q ss_pred             CccccccHHHHhhc---------C--CCCc-EEEEecC-------CCceeEEEEEeCCceeeeeeeEEeccCCc------
Q 021001            2 EPSQKVNMPRVDRI---------E--PGYY-LYATAHW-------DNVDGCAMFWKADKFRLLEQTSIEFKEFG------   56 (318)
Q Consensus         2 ~~~~ivclqEv~~~---------~--~GY~-~y~~r~g-------~~~~G~AIf~r~~rf~l~~~~~i~~~~~~------   56 (318)
                      .++|||||||++..         +  .||. +|..|.+       ...||||||||++||++++...++|+...      
T Consensus       297 ~~aDIICLQEV~~~~~~d~~~p~L~~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~  376 (606)
T PLN03144        297 YRADILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEA  376 (606)
T ss_pred             cCCCEEEEeecCHHHHHHHHHhhhhhcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCcc
Confidence            36899999999532         1  6898 8876653       25899999999999999999999876421      


Q ss_pred             --------------cCCcEEEEEEEEeccc--------CCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 021001           57 --------------LRENVAQLSAFEMRNT--------KSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN  114 (318)
Q Consensus        57 --------------~~~~v~~~~~l~~~~~--------~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~  114 (318)
                                    +++|+|++++|+.+.+        .++.|+|+||||+|+|...++|+.|++.|+++++++... .+
T Consensus       377 ~~~s~~~~~~l~Rl~kdNVAliv~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~~-~~  455 (606)
T PLN03144        377 LIPSAQKKAALNRLLKDNVALIVVLEAKFGNQGADNGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAAS-AD  455 (606)
T ss_pred             ccccccchhhhhhhccCcEEEEEEEEEecccccccCCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHHHHhhc-CC
Confidence                          2467999999998721        245799999999999999999999999999999988653 37


Q ss_pred             CcEEEeecCCCCCCCcchhhcccCcccccccccccccCCccccccccccccccccCCcccccCCCCCCCChHHHHhhhcC
Q 021001          115 IPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGN  194 (318)
Q Consensus       115 ~PvIl~GDFNs~P~s~~y~~L~~g~l~~~~~d~~~~sg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (318)
                      .|+|+|||||+.|+|++|++|++|.+...+.|+..                    ++.    +    -|.          
T Consensus       456 ~PvIlcGDFNS~P~S~vy~lLt~G~v~~~h~d~~~--------------------~~~----~----~~~----------  497 (606)
T PLN03144        456 IPMLVCGDFNSVPGSAPHCLLATGKVDPLHPDLAV--------------------DPL----G----ILR----------  497 (606)
T ss_pred             CceEEeccCCCCCCChhhhhhhcCCcCCCchhhcc--------------------Ccc----c----ccc----------
Confidence            89999999999999999999999998776654310                    000    0    011          


Q ss_pred             cccccccCCCCCccccccc---CCCC------CCC--CCCCCCccccccCccCcceeEEEeecC-ccccccccCCChhhh
Q 021001          195 AQCYLAVHPLKLNSSYASV---KGSP------RTR--GINGEPLATSYHSKFFGTVDYLWYTKG-LVPTRVLDTLPVDIL  262 (318)
Q Consensus       195 ~~~~~~~h~~~l~SaY~~~---~g~~------~~~--~~~~ep~fTn~~~~f~~~lDYIfys~~-~~~~~~L~~~~~~~l  262 (318)
                       ....+.|+|+|+|||+.+   .|..      +.|  ..++||.||||+.+|+||||||||+++ +.+.++|++|+++++
T Consensus       498 -~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~~r~~~~~geP~fTNyt~~F~gtlDYIfys~~~L~v~~vL~lp~e~~l  576 (606)
T PLN03144        498 -PASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNEPLFTNCTRDFIGTLDYIFYTADSLTVESLLELLDEESL  576 (606)
T ss_pred             -ccccccCCCcccchhhhhccccccccchhhhhhccccccCCCCceeecCCcceeEEEEEEcCCCceEEeecCCCCHHHh
Confidence             024578999999999876   2211      011  125899999999999999999999975 556789999999999


Q ss_pred             ccCCCCCCCCCCCcchheeeEEEEEe
Q 021001          263 RRTGGLPCKVRTVERVGFAISCCMTQ  288 (318)
Q Consensus       263 ~~~~~lPn~~~pSDHl~l~a~~~~~~  288 (318)
                      .+..||||..||||||||+|+|+|+.
T Consensus       577 ~~~~gLPn~~~PSDHI~L~AeF~~~~  602 (606)
T PLN03144        577 RKDTALPSPEWSSDHIALLAEFRCKP  602 (606)
T ss_pred             cccCCCCCCCCCCccccEeEEEEecc
Confidence            99999999999999999999999975

>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription] Back     alignment and domain information
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription] Back     alignment and domain information
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>PRK11756 exonuclease III; Provisional Back     alignment and domain information
>TIGR03395 sphingomy sphingomyelin phosphodiesterase Back     alignment and domain information
>PRK05421 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00195 exoDNase_III exodeoxyribonuclease III Back     alignment and domain information
>PRK13911 exodeoxyribonuclease III; Provisional Back     alignment and domain information
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00633 xth exodeoxyribonuclease III (xth) Back     alignment and domain information
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional Back     alignment and domain information
>smart00476 DNaseIc deoxyribonuclease I Back     alignment and domain information
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms] Back     alignment and domain information
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling [] Back     alignment and domain information
>COG2374 Predicted extracellular nuclease [General function prediction only] Back     alignment and domain information
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues Back     alignment and domain information
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional Back     alignment and domain information
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B Back     alignment and domain information
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair] Back     alignment and domain information
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional Back     alignment and domain information
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
3ngq_A398 Crystal Structure Of The Human Cnot6l Nuclease Doma 3e-08
3ngn_A398 Crystal Structure Of The Human Cnot6l Nuclease Doma 3e-08
4b8c_D727 Nuclease Module Of The Yeast Ccr4-Not Complex Lengt 5e-04
>pdb|3NGQ|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain Length = 398 Back     alignment and structure 
Iteration: 1

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 38/160 (23%)
Query: 29  NVDGCAMFWKADKFRLLEQTSIEFKEFGL---------------RENVAQLSAFEMRN-- 71
           +VDGCA+F+K +KF L+++ ++EF +  +               ++N+      E+    
Sbjct: 122 HVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKEL 181
Query: 72  ----------TKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKW--------- 112
                        + ++V N H+ ++P   +VKL Q     S  + + EK          
Sbjct: 182 FGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTA 241
Query: 113 --GNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDL 150
              +IP+VL  D N  P S + ++LS+  +     D ++L
Sbjct: 242 DPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKEL 281
>pdb|3NGN|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain In Complex With Amp Length = 398 Back     alignment and structure
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 2e-23
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 2e-11
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 3e-10
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 1e-08
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 7e-05
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 7e-05
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 7e-04
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Length = 398 Back     alignment and structure
 Score = 98.9 bits (245), Expect = 2e-23
 Identities = 56/297 (18%), Positives = 100/297 (33%), Gaps = 80/297 (26%)

Query: 17  PGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGL---------------RENV 61
               + +     +VDGCA+F+K +KF L+++ ++EF +  +               ++N+
Sbjct: 110 SRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNI 169

Query: 62  AQLSAFEMRNTK------------SRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVA 109
                 E+                 + ++V N H+ ++P   +VKL Q     S  + + 
Sbjct: 170 GVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNIL 229

Query: 110 EKW-----------GNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHL 158
           EK             +IP+VL  D N  P S + ++LS+  +     D ++L        
Sbjct: 230 EKASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELRYNECLMN 289

Query: 159 VQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPR 218
                                               +      H  +L S+Y        
Sbjct: 290 FSCNG----------------------------KNGSSEGRITHGFQLKSAY-------- 313

Query: 219 TRGINGEPLATSYHSKFFGTVDYLWYTKG-LVPTRVLDTLPVDIL--RRTGGLPCKV 272
               N     T+Y   F G +DY++Y+K  +    VL  L    L      G P   
Sbjct: 314 ---ENNLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPH 367
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Length = 298 Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Length = 267 Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Length = 257 Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Length = 317 Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Length = 301 Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Length = 306 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query318
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 100.0
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 100.0
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 99.93
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 99.93
4gz1_A256 Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl 99.92
4f1h_A250 Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com 99.91
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 99.91
4gew_A362 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.89
4fva_A256 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.89
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 99.87
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 99.86
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 99.83
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 99.77
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 99.77
2jc5_A259 Exodeoxyribonuclease; hydrolase, repair phosphodie 99.76
2a40_B260 Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse 99.73
2jc4_A256 Exodeoxyribonuclease III; hydrolase, repair phosph 99.72
2o3h_A285 DNA-(apurinic or apyrimidinic site) lyase; APE, en 99.7
1hd7_A318 DNA-(apurinic or apyrimidinic site) lyase; DNA rep 99.7
3g91_A265 MTH0212, exodeoxyribonuclease; double-strand speci 99.69
2voa_A257 AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP 99.67
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 99.67
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 99.67
1wdu_A245 TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA 99.65
2imq_X282 Salivary nitrophorin; ferrous heme, beta-sandwich, 99.49
2f1n_A262 CDT B, cytolethal distending toxin subunit B; E.co 99.42
1sr4_B261 CDT B, cytolethal distending toxin protein B; bact 99.36
2ei9_A240 Non-LTR retrotransposon R1BMKS ORF2 protein; four 99.35
1i9z_A347 Synaptojanin, phosphatidylinositol phosphate phosp 99.29
2xsw_A357 72 kDa inositol polyphosphate 5-phosphatase; inosi 98.85
4a9c_A316 Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; 97.59
3mtc_A313 Type II inositol-1,4,5-trisphosphate 5-phosphatas; 97.0
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Back     alignment and structure
Probab=100.00  E-value=4.6e-52  Score=401.83  Aligned_cols=253  Identities=25%  Similarity=0.435  Sum_probs=195.3

Q ss_pred             ccccccHHHHhhc---------C--CCCc-EEEEecC---------CCceeEEEEEeCCceeeeeeeEEeccCCc-----
Q 021001            3 PSQKVNMPRVDRI---------E--PGYY-LYATAHW---------DNVDGCAMFWKADKFRLLEQTSIEFKEFG-----   56 (318)
Q Consensus         3 ~~~ivclqEv~~~---------~--~GY~-~y~~r~g---------~~~~G~AIf~r~~rf~l~~~~~i~~~~~~-----   56 (318)
                      .+|||||||++..         +  .||. +|..+..         ...+|||||||+++|+++++..++|++..     
T Consensus        75 ~pDIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~  154 (398)
T 3ngq_A           75 DADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSD  154 (398)
T ss_dssp             CCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCT
T ss_pred             CCCEEEEecccHHHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccc
Confidence            6899999999742         1  5998 7754321         36799999999999999999999997531     


Q ss_pred             ----------cCCcEEEEEEEEeccc------------CCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHh--
Q 021001           57 ----------LRENVAQLSAFEMRNT------------KSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKW--  112 (318)
Q Consensus        57 ----------~~~~v~~~~~l~~~~~------------~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~--  112 (318)
                                .++|+++++.|+.+.+            .++.|+|+||||+|+|...++|+.|++.|+++++++.++.  
T Consensus       155 ~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~  234 (398)
T 3ngq_A          155 GSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASS  234 (398)
T ss_dssp             TCHHHHHTTTTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             cchhhhcceeeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                      1478999999998741            2678999999999999989999999999999999875321  


Q ss_pred             ---------CCCcEEEeecCCCCCCCcchhhcccCcccccccccccccCCccccccccccccccccCCcccccCCCCCCC
Q 021001          113 ---------GNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGW  183 (318)
Q Consensus       113 ---------~~~PvIl~GDFNs~P~s~~y~~L~~g~l~~~~~d~~~~sg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  183 (318)
                               ...|+|||||||+.|+|++|++|++|.+..+|.|+...... .|...  |       ++            
T Consensus       235 ~~~~~~~~~~~~PvIl~GDFNs~P~s~vy~~L~~G~v~~~h~d~~~~~y~-~~~~~--~-------~~------------  292 (398)
T 3ngq_A          235 RPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELRYN-ECLMN--F-------SC------------  292 (398)
T ss_dssp             ----------CCCEEEEEECSCCTTSHHHHHHHHTEEETTCGGGCC------GGGG--G-------CC------------
T ss_pred             ccccccccCCCCceEEEeeCCCCCCCHHHHHHhcCCCCCCChhhhhcccc-ccccc--c-------cc------------
Confidence                     35799999999999999999999999998888776432100 01000  0       00            


Q ss_pred             ChHHHHhhhcCcccccccCCCCCcccccccCCCCCCCCCCCCCccccccCccCcceeEEEeecC-ccccccccCCChhhh
Q 021001          184 TDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKG-LVPTRVLDTLPVDIL  262 (318)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~h~~~l~SaY~~~~g~~~~~~~~~ep~fTn~~~~f~~~lDYIfys~~-~~~~~~L~~~~~~~l  262 (318)
                      ..+      .......+.|+|+|+|||+.           +||+||||+.+|.||||||||+++ +.++++|.+++++++
T Consensus       293 ~~~------~~~~~~~~~h~~~L~SAy~~-----------~~~~fTnyt~~F~g~lDYI~~s~~~l~v~~vl~~~~~~~l  355 (398)
T 3ngq_A          293 NGK------NGSSEGRITHGFQLKSAYEN-----------NLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWL  355 (398)
T ss_dssp             -------------CCEEECSCCEEETTTT-----------TSSSCSEECSSCEECCEEEEEETTTEEEEEEECCCCHHHH
T ss_pred             ccc------ccccccccccCccccccccC-----------CCCCceeccCCcCCceeEEEEeCCceEEEeecCCCCHHHh
Confidence            000      00012358999999999975           489999999999999999999985 667899999999887


Q ss_pred             c--cCCCCCCCCCCCcchheeeEEEEEecCCCCC
Q 021001          263 R--RTGGLPCKVRTVERVGFAISCCMTQKLHESV  294 (318)
Q Consensus       263 ~--~~~~lPn~~~pSDHl~l~a~~~~~~~~~~~~  294 (318)
                      .  +..||||..||||||||+|+|+|.++..+..
T Consensus       356 ~~~~~~glP~~~~PSDHi~l~a~f~~~~~~~~~~  389 (398)
T 3ngq_A          356 VENNITGCPHPHIPSDHFSLLTQLELHPPLLPLV  389 (398)
T ss_dssp             HHTTCCSSCBTTBCSSBCCEEEEEEECCC-----
T ss_pred             ccccccCCCCCCCCCcchheeEEEEEccCCCCCC
Confidence            5  5789999999999999999999988754443
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A* Back     alignment and structure
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B* Back     alignment and structure
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A Back     alignment and structure
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans} Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Back     alignment and structure
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Back     alignment and structure
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Back     alignment and structure
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* Back     alignment and structure
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Back     alignment and structure
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Back     alignment and structure
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A Back     alignment and structure
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Back     alignment and structure
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Back     alignment and structure
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Back     alignment and structure
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Back     alignment and structure
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Back     alignment and structure
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Back     alignment and structure
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Back     alignment and structure
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Back     alignment and structure
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* Back     alignment and structure
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query318
d1zwxa1293 Sphingomyelin phosphodiesterase C {Listeria ivanov 99.79
d2ddra1299 Sphingomyelin phosphodiesterase C {Bacillus cereus 99.77
d2a40b1260 Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913 99.68
d1sr4b_261 Cytolethal distending toxin subunit B {Haemophilus 99.56
d2f1na1250 Cytolethal distending toxin subunit B {Escherichia 99.54
d1vyba_236 Endonuclease domain of LINE-1 reverse transcriptas 99.47
d1wdua_228 Endonuclease domain of TRAS1 retrotransposon (ORF2 99.35
d2imqx1280 Salivary nitrophorin {Bedbug (Cimex lectularius) [ 99.35
d1hd7a_275 DNA repair endonuclease Hap1 {Human (Homo sapiens) 99.21
d1i9za_345 Synaptojanin, IPP5C domain {Fission yeast (Schizos 99.16
d1akoa_268 DNA-repair enzyme exonuclease III {Escherichia col 98.65
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Listeria ivanovii [TaxId: 1638]

Probab=99.79  E-value=1.1e-19  Score=161.65  Aligned_cols=102  Identities=11%  Similarity=0.107  Sum_probs=71.3

Q ss_pred             CceeEEEEEeCCceeeeeeeEEeccCCcc----CCcEEEEEEEEecccCCceEEEEEecccCCCCC-h-----hhHHHHH
Q 021001           29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNR-G-----EVKLGQI   98 (318)
Q Consensus        29 ~~~G~AIf~r~~rf~l~~~~~i~~~~~~~----~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~-~-----~~R~~Q~   98 (318)
                      ...|+||+   +|+++.....+.+.....    ..+.++.+.+..  . +..++|+||||.+.... .     ..|..|+
T Consensus        93 ~~~g~~il---sr~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~v~~~Hl~~~~~~~~~~~~~~~r~~~~  166 (293)
T d1zwxa1          93 EDGGVAVV---SQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIMK--N-GKPYHIIGTHTQADDSLISKDTSRAIRAEQM  166 (293)
T ss_dssp             BCCCCEEE---ESSCEEEEEEEECSCCCGGGGGBCCEEEEEEEEE--T-TEEEEEEEEECCCCCTTSCHHHHHHHHHHHH
T ss_pred             cccceEEE---eccCcccceeeeeeccccccccccceEEEEEEec--C-CceEEEEEeeeeccCCccchhHHHHHHHHHH
Confidence            45799999   678888777766555421    234455555554  2 78999999999874321 1     2377888


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcchhhccc
Q 021001           99 CFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSS  137 (318)
Q Consensus        99 ~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~~L~~  137 (318)
                      ..+++.+.+... ..+.|+|||||||+.|.+..++.+.+
T Consensus       167 ~~~~~~~~~~~~-~~~~~vil~GDfN~~~~~~~~~~~~~  204 (293)
T d1zwxa1         167 QEIQTFIAKKNI-PKDEIIFIGGDLNVNYGTDEYHDMLK  204 (293)
T ss_dssp             HHHHHHHHHHTC-CTTSEEEEEEECCCCTTSHHHHHHHH
T ss_pred             HHhhhhhhhhcc-CCCCcEEEEeecCCCCCchHHHHHHh
Confidence            887777665422 13678999999999999999887765
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Back     information, alignment and structure
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Back     information, alignment and structure
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure