Citrus Sinensis ID: 021008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKILPKKCSKIEAFNPLHHGSMIDELAIEEQLS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHccccccccEEEEEEcccccccccccccEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHcccccccccccccEEEEEEccccccccEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHccccHcccEEEEEccHHccHHHHHcccEEEEEEHccccHHHHHHHHHHHHHHcccccEEEEEccccHHEEccccccHHHccccEEEEEEcccccEEEEEEEEEcccccccccccccccccccccccHHHEccHHHcccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVCQNDALVKKVCELYEQIsgleslkpckdvnMLFTNLVvtcmppnypidvtKLCQSVQDIRSKLIRLCGEAEGLLESHFSSILASfenpianlnifpyysnyiKLSQLEFNILTQhcsrfptkiafigsgplpltSIVLAINHLtttcfdnydidpsanskalslvssdpdlstrmffhTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGAraflypvvdpsdllgfevlsvfhptdevINSVVLARKyvmpsleqqdqlspkilpkkcskieafnplhhgsmidELAIEEQLS
Flexible Loop (DISEMBL)
mvcqndalVKKVCELYEQISgleslkpckDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPsleqqdqlspkilPKKCSKIEAFNPLHHGSMIDELAIEEQLS
Low Complexity Region (SEG)
MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKILPKKCSKIEAFNPLHHGSMIDELAIEEQLS
Disordered region (IsUnstruct)
*****DALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP***************LSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPS***************C*KIEAFN******************
Disordered Region (DISOPRED)
******A*VKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKY*************KILPKKCSKIEAFNP****SM****AIE****
Disordered Region (DISEMBL)
MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKILPKKCSKIEAFNPLHHGSMIDELAIEEQLS
Disordered Region (DISPRO)
*VCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLE*QDQLSPKILPKKCSKIEAFNPLHHGSMIDELAIEE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKILPKKCSKIEAFNPLHHGSMIDELAIEEQLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
Q9XGI7	317	Nicotianamine synthase OS	N/A	no	0.987	0.990	0.682	1e-125
Q9C7X5	324	Probable nicotianamine sy	yes	no	0.984	0.966	0.617	1e-107
O80483	320	Nicotianamine synthase 3	no	no	0.993	0.987	0.618	1e-107
Q9FF79	320	Nicotianamine synthase 1	no	no	0.987	0.981	0.581	1e-104
Q9FKT9	320	Nicotianamine synthase 2	no	no	0.937	0.931	0.588	1e-101
Q9XFB7	340	Nicotianamine synthase 9	N/A	no	0.905	0.847	0.523	2e-84
Q0D3F2	343	Nicotianamine synthase 3	yes	no	0.962	0.892	0.498	2e-84
A2YQ58	343	Nicotianamine synthase 3	N/A	no	0.962	0.892	0.498	2e-84
Q9ZQV8	335	Probable nicotianamine sy	N/A	no	0.852	0.808	0.542	1e-83
Q9ZQV7	335	Probable nicotianamine sy	N/A	no	0.852	0.808	0.528	4e-81

>sp|Q9XGI7|NAS_SOLLC Nicotianamine synthase OS=Solanum lycopersicum GN=CHLN PE=2 SV=1

 Score =  447 bits (1149), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/318 (68%), Positives = 269/318 (84%), Gaps = 4/318 (1%)

Query: 1   MVCQN-DALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQ 59
           MVC N + +V+KVCELYEQIS LE+L P KDVN+LFT+LV TCMPPN PIDV+KLCQ +Q
Sbjct: 1   MVCPNSNPVVEKVCELYEQISRLENLSPSKDVNVLFTDLVHTCMPPN-PIDVSKLCQKIQ 59

Query: 60  DIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCS 119
           +IRS LI+LCG+AEGLLESHFS IL+S+ENP+ +L+IFPY+ NYIKLS LE+NILT++ +
Sbjct: 60  EIRSHLIKLCGQAEGLLESHFSKILSSYENPLQHLHIFPYFDNYIKLSLLEYNILTKNTT 119

Query: 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFF 179
             P KIAFIGSGPLPLTS+VLA  HL TTCF NYDID  AN  A +LV++DPD+S+RM F
Sbjct: 120 NIPKKIAFIGSGPLPLTSLVLATKHLKTTCFHNYDIDVDANFMASALVAADPDMSSRMTF 179

Query: 180 HTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFL 239
           HT D+M+V+ ALKDY+VVFLAALVGMDK++K++V+DHLAKYM+PGA LMLRSAHGARAFL
Sbjct: 180 HTADVMDVTCALKDYDVVFLAALVGMDKEDKVKVVDHLAKYMSPGATLMLRSAHGARAFL 239

Query: 240 YPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKILPKK--CSKIE 297
           YPV+DP DL GFEVLSV+HPTDEVINSV++ARK  +PS+   D L   +LP K  C++I 
Sbjct: 240 YPVLDPRDLRGFEVLSVYHPTDEVINSVIIARKLPVPSVPLLDGLGAYVLPSKCACAEIH 299

Query: 298 AFNPLHHGSMIDELAIEE 315
           AFNPL+  ++++E A+EE
Sbjct: 300 AFNPLNKMNLVEEFALEE 317

Synthesizes nicotianamine, a polyamine that serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.
Solanum lycopersicum (taxid: 4081)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 4EC: 3

>sp|Q9C7X5|NAS4_ARATH Probable nicotianamine synthase 4 OS=Arabidopsis thaliana GN=NAS4 PE=2 SV=1

 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/324 (61%), Positives = 253/324 (78%), Gaps = 11/324 (3%)

Query: 3   CQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIR 62
           CQ+D LV K+C+LYE+IS LE+LKPC+DV+ LF  LV TC+PPN  IDVTK+ +++Q++R
Sbjct: 4   CQDDQLVNKICDLYEKISKLETLKPCEDVDTLFKQLVSTCIPPNPNIDVTKMSENIQEMR 63

Query: 63  SKLIRLCGEAEGLLESHFSSILASFE-NPIANLNIFPYYSNYIKLSQLEFNILTQHCSRF 121
           S LI++CGEAEG LE HFSSIL SFE NP+ +LN+FPYY+NY+KLS+LEF++L Q+ + F
Sbjct: 64  SNLIKICGEAEGYLEHHFSSILTSFEDNPLHHLNLFPYYNNYLKLSKLEFDLLEQNLNGF 123

Query: 122 -PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180
            P  +AFIGSGPLPLTS+VLA +HL  + F N+DIDPSAN  A  LVSSDPDLS RMFFH
Sbjct: 124 VPRTVAFIGSGPLPLTSVVLASSHLKDSIFHNFDIDPSANMVAARLVSSDPDLSQRMFFH 183

Query: 181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240
           T DIM+V+ +LK ++VVFLAALVGMDK EK++V++HL K+M+PGALLMLRSAHG RAFLY
Sbjct: 184 TVDIMDVTESLKGFDVVFLAALVGMDKKEKVKVVEHLEKHMSPGALLMLRSAHGPRAFLY 243

Query: 241 PVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPS----LEQQDQLSPKILPKKCSKI 296
           P+V+P DL GFEVLSV+HPTDEVINS+V++RK    +     +  DQ S   L   CSKI
Sbjct: 244 PIVEPCDLEGFEVLSVYHPTDEVINSIVISRKLGEDANGVVHDHIDQASD--LACNCSKI 301

Query: 297 EAFNPLHHGSMIDELAI--EEQLS 318
                    S+I+E A   EEQL+
Sbjct: 302 HVIMN-KKKSIIEEFAGANEEQLT 324

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|O80483|NAS3_ARATH Nicotianamine synthase 3 OS=Arabidopsis thaliana GN=NAS3 PE=2 SV=1

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/322 (61%), Positives = 255/322 (79%), Gaps = 6/322 (1%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
           M CQ++ LV+ +C+LYE+IS LESLKP +DVN+LF  LV TC+PPN  IDVTK+C  VQ+
Sbjct: 1   MGCQDEQLVQTICDLYEKISKLESLKPSEDVNILFKQLVSTCIPPNPNIDVTKMCDRVQE 60

Query: 61  IRSKLIRLCGEAEGLLESHFSSILASFE-NPIANLNIFPYYSNYIKLSQLEFNILTQHCS 119
           IR  LI++CG AEG LE+HFSSIL S++ NP+ +LNIFPYY+NY+KL +LEF++L Q+ +
Sbjct: 61  IRLNLIKICGLAEGHLENHFSSILTSYQDNPLHHLNIFPYYNNYLKLGKLEFDLLEQNLN 120

Query: 120 RF-PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMF 178
            F P  +AFIGSGPLPLTSIVLA  HL  T F N+DIDPSANS A  LVSSDPD+S RMF
Sbjct: 121 GFVPKSVAFIGSGPLPLTSIVLASFHLKDTIFHNFDIDPSANSLASLLVSSDPDISQRMF 180

Query: 179 FHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAF 238
           FHT DIM+V+ +LK ++VVFLAALVGM+K+EK++VI+HL K+MAPGA+LMLRSAHG RAF
Sbjct: 181 FHTVDIMDVTESLKSFDVVFLAALVGMNKEEKVKVIEHLQKHMAPGAVLMLRSAHGPRAF 240

Query: 239 LYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKIL-PKKCSKIE 297
           LYP+V+P DL GFEVLS++HPTD+VINSVV+++K+ + S+      +  +L P  CSK  
Sbjct: 241 LYPIVEPCDLQGFEVLSIYHPTDDVINSVVISKKHPVVSIGNVGGPNSCLLKPCNCSKTH 300

Query: 298 AFNPLHHGSMIDEL-AIEEQLS 318
           A   ++   MI+E  A EEQLS
Sbjct: 301 A--KMNKNMMIEEFGAREEQLS 320

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9FF79|NAS1_ARATH Nicotianamine synthase 1 OS=Arabidopsis thaliana GN=NAS1 PE=2 SV=1

 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/320 (58%), Positives = 242/320 (75%), Gaps = 6/320 (1%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
           M CQN+ +VK++ +LY+QIS L+SLKP K+V+ LF  LV TC+P +  IDVT +C+ V+D
Sbjct: 1   MACQNNLVVKQIIDLYDQISKLKSLKPSKNVDTLFGQLVSTCLPTDTNIDVTNMCEEVKD 60

Query: 61  IRSKLIRLCGEAEGLLESHFSSILASFE---NPIANLNIFPYYSNYIKLSQLEFNILTQH 117
           +R+ LI+LCGEAEG LE HFS+IL S +   NP+ +L+IFPYYSNY+KL +LEF++L+QH
Sbjct: 61  MRANLIKLCGEAEGYLEQHFSTILGSLQEDQNPLDHLHIFPYYSNYLKLGKLEFDLLSQH 120

Query: 118 CSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRM 177
            S  PTKIAF+GSGP+PLTSIVLA  HL  T F N+DID  AN+ A +LVS DPDLS RM
Sbjct: 121 SSHVPTKIAFVGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDPDLSKRM 180

Query: 178 FFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARA 237
            FHTTD++N +  L  Y+VVFLAALVGMDK+ K++ I+HL K+MAPGA+LMLRSAH  RA
Sbjct: 181 IFHTTDVLNATEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVLMLRSAHALRA 240

Query: 238 FLYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSP-KILPKKCSKI 296
           FLYP+VD SDL GF++L+++HPTD+V+NSVV+ARK   P+    +       +P  CSKI
Sbjct: 241 FLYPIVDSSDLKGFQLLTIYHPTDDVVNSVVIARKLGGPTTPGVNGTRGCMFMPCNCSKI 300

Query: 297 EA-FNPLHHGSMIDEL-AIE 314
            A  N     +MI+E  AIE
Sbjct: 301 HAIMNNRGKKNMIEEFSAIE 320

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9FKT9|NAS2_ARATH Nicotianamine synthase 2 OS=Arabidopsis thaliana GN=NAS2 PE=2 SV=1

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/301 (58%), Positives = 233/301 (77%), Gaps = 3/301 (0%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLC-QSVQ 59
           M C+N+ +VK++ +LY QIS LESLKP K+V+ LF  LV TC+P +  IDVT++  + V+
Sbjct: 1   MACENNLVVKQIMDLYNQISNLESLKPSKNVDTLFRQLVSTCLPTDTNIDVTEIHDEKVK 60

Query: 60  DIRSKLIRLCGEAEGLLESHFSSILASFE-NPIANLNIFPYYSNYIKLSQLEFNILTQHC 118
           D+RS LI+LCGEAEG LE HFS+IL SFE NP+ +L+IFPYY+NY+KL +LEF++L+QH 
Sbjct: 61  DMRSHLIKLCGEAEGYLEQHFSAILGSFEDNPLNHLHIFPYYNNYLKLGKLEFDLLSQHT 120

Query: 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMF 178
           +  PTK+AFIGSGP+PLTSIVLA  HL  T F N+DID  AN+ A +LVS D DLS RM 
Sbjct: 121 THVPTKVAFIGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDSDLSKRMI 180

Query: 179 FHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAF 238
           FHTTD++N    L  Y+VVFLAALVGMDK+ K++ I+HL K+MAPGA++MLRSAHG RAF
Sbjct: 181 FHTTDVLNAKEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVVMLRSAHGLRAF 240

Query: 239 LYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSP-KILPKKCSKIE 297
           LYP+VD  DL GFEVL+++HP+D+V+NSVV+ARK    +  +  Q+    ++P  CSK+ 
Sbjct: 241 LYPIVDSCDLKGFEVLTIYHPSDDVVNSVVIARKLGGSNGARGSQIGRCVVMPCNCSKVH 300

Query: 298 A 298
           A
Sbjct: 301 A 301

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9XFB7|NAS9_HORVU Nicotianamine synthase 9 OS=Hordeum vulgare GN=NAS9 PE=1 SV=1

 Score =  312 bits (799), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 153/292 (52%), Positives = 206/292 (70%), Gaps = 4/292 (1%)

Query: 2   VCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDI 61
           V + +ALVKK+  L   I  L SL P  +VN LFT LV +C+PP+  +DV  L    Q++
Sbjct: 12  VMEEEALVKKITGLAAAIGELPSLSPSPEVNALFTELVTSCIPPST-VDVDALGPDAQEM 70

Query: 62  RSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHC-SR 120
           R++LIRLC +AEG LE+H+S +LA+ +NP+ +L +FPY++NYIKLSQLE  +L +H    
Sbjct: 71  RARLIRLCADAEGHLEAHYSDLLAAHDNPLDHLTLFPYFNNYIKLSQLEHGLLARHVPGP 130

Query: 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180
            P ++AF+GSGPLPL+S+VLA  HL    FDNYDI   AN +A  LV +D D   RM F 
Sbjct: 131 APARVAFLGSGPLPLSSLVLAARHLPDASFDNYDISGEANERASRLVRADADAGARMAFR 190

Query: 181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240
           T D+ +V++ L+ Y+VVFLAALVGM  +EK R+++HL ++MAPGA L++RSAHGAR FLY
Sbjct: 191 TADVADVTTELEGYDVVFLAALVGMAAEEKARLVEHLGRHMAPGAALVVRSAHGARGFLY 250

Query: 241 PVVDPSDLL--GFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKILP 290
           PVVDP ++   GFEVL+V HP DEVINSV++ARK   P     D+  P  +P
Sbjct: 251 PVVDPEEIRRGGFEVLTVHHPEDEVINSVIIARKAAAPPPVAADRDVPVNMP 302

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q0D3F2|NAS3_ORYSJ Nicotianamine synthase 3 OS=Oryza sativa subsp. japonica GN=NAS3 PE=2 SV=1

 Score =  312 bits (799), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 158/317 (49%), Positives = 220/317 (69%), Gaps = 11/317 (3%)

Query: 8   LVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIR 67
           LV+K+  L   I  L SL P  +VN LFT LV+TC+PP+  +DV +L    QD+R +LIR
Sbjct: 25  LVEKITGLAAAIGKLPSLSPSPEVNALFTELVMTCIPPSS-VDVEQLGAEAQDMRGRLIR 83

Query: 68  LCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQH--CSRFPTKI 125
           LC +AEG LE+H+S +LA+ +NP+ +L +FPY++NYI+L+QLE+ +L +H   +  P+++
Sbjct: 84  LCADAEGHLEAHYSDVLAAHDNPLDHLALFPYFNNYIQLAQLEYALLARHLPAAPPPSRL 143

Query: 126 AFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM 185
           AF+GSGPLPL+S+VLA  HL    F NYDI   AN +A  LV +D DLS RM FHT+D+ 
Sbjct: 144 AFLGSGPLPLSSLVLAARHLPAASFHNYDICADANRRASRLVRADRDLSARMAFHTSDVA 203

Query: 186 NVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDP 245
           +V++ L  Y+VVFLAALVGM  +EK R+++HL K+MAPGA L++RSAHGAR FLYPVVDP
Sbjct: 204 HVTTDLAAYDVVFLAALVGMAAEEKARMVEHLGKHMAPGAALVVRSAHGARGFLYPVVDP 263

Query: 246 SDLL--GFEVLSVFHPTDEVINSVVLARK--YVMPSLEQQDQLS---PKILPKKCSKIEA 298
            ++   GF+VL+V HP  EVINSV++ARK     P+LE  D  +     ++ + C + E 
Sbjct: 264 EEIRRGGFDVLAVHHPEGEVINSVIIARKPPVAAPALEGGDAHAHGHGAVVSRPCQRCE- 322

Query: 299 FNPLHHGSMIDELAIEE 315
                H  M D  A+E+
Sbjct: 323 MEARAHQKMEDMSAMEK 339

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serve as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|A2YQ58|NAS3_ORYSI Nicotianamine synthase 3 OS=Oryza sativa subsp. indica GN=NAS3 PE=2 SV=2

 Score =  312 bits (799), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 158/317 (49%), Positives = 220/317 (69%), Gaps = 11/317 (3%)

Query: 8   LVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIR 67
           LV+K+  L   I  L SL P  +VN LFT LV+TC+PP+  +DV +L    QD+R +LIR
Sbjct: 25  LVEKITGLAAAIGKLPSLSPSPEVNALFTELVMTCIPPSS-VDVEQLGAEAQDMRGRLIR 83

Query: 68  LCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQH--CSRFPTKI 125
           LC +AEG LE+H+S +LA+ +NP+ +L +FPY++NYI+L+QLE+ +L +H   +  P+++
Sbjct: 84  LCADAEGHLEAHYSDVLAAHDNPLDHLALFPYFNNYIQLAQLEYALLARHLPAAPPPSRL 143

Query: 126 AFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM 185
           AF+GSGPLPL+S+VLA  HL    F NYDI   AN +A  LV +D DLS RM FHT+D+ 
Sbjct: 144 AFLGSGPLPLSSLVLAARHLPAASFHNYDICADANRRASRLVRADRDLSARMAFHTSDVA 203

Query: 186 NVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDP 245
           +V++ L  Y+VVFLAALVGM  +EK R+++HL K+MAPGA L++RSAHGAR FLYPVVDP
Sbjct: 204 HVTTDLAAYDVVFLAALVGMAAEEKARMVEHLGKHMAPGAALVVRSAHGARGFLYPVVDP 263

Query: 246 SDLL--GFEVLSVFHPTDEVINSVVLARK--YVMPSLEQQDQLS---PKILPKKCSKIEA 298
            ++   GF+VL+V HP  EVINSV++ARK     P+LE  D  +     ++ + C + E 
Sbjct: 264 EEIRRGGFDVLAVHHPEGEVINSVIIARKPPVAAPALEGGDAHAHGHGAVVSRPCQRCE- 322

Query: 299 FNPLHHGSMIDELAIEE 315
                H  M D  A+E+
Sbjct: 323 MEARAHQKMEDMSAMEK 339

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serve as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9ZQV8|NAS3_HORVU Probable nicotianamine synthase 3 OS=Hordeum vulgare GN=NAS3 PE=2 SV=1

 Score =  309 bits (792), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 152/280 (54%), Positives = 202/280 (72%), Gaps = 9/280 (3%)

Query: 1   MVCQND-----ALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLC 55
           M  QN+     ALV+K+  L+  I+ L SL P  DV+ LFT LV  C+PP+ P+DVTKL 
Sbjct: 1   MAAQNNNKDVAALVEKITGLHAAIAKLPSLSPSPDVDALFTELVTACVPPS-PVDVTKLG 59

Query: 56  QSVQDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILT 115
              Q++R  LIRLC EAEG LE+H+S +LA+F+NP+ +L IFPYYSNYI LS+LE+ +L 
Sbjct: 60  PEAQEMREGLIRLCSEAEGKLEAHYSDMLAAFDNPLDHLGIFPYYSNYINLSKLEYELLA 119

Query: 116 QHCSRF-PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS 174
           ++  R  P ++AFIGSGPLP +S VLA  HL  T FDNYD+  +AN +A  L  +D D+ 
Sbjct: 120 RYVRRHRPARVAFIGSGPLPFSSFVLAARHLPDTMFDNYDLCGAANDRASKLFRADTDVG 179

Query: 175 TRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG 234
            RM FHT D+ +++S L  Y+VVFLAALVGM  ++K +VI HL  +MA GA L++RSAHG
Sbjct: 180 ARMSFHTADVADLASELAKYDVVFLAALVGMAAEDKAKVIAHLGAHMADGAALVVRSAHG 239

Query: 235 ARAFLYPVVDPSDL--LGFEVLSVFHPTDEVINSVVLARK 272
           AR FLYP+VDP D+   GFEVL+V HP D+V+NSV++A+K
Sbjct: 240 ARGFLYPIVDPQDIGRGGFEVLAVCHPDDDVVNSVIIAQK 279

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9ZQV7|NAS2_HORVU Probable nicotianamine synthase 2 OS=Hordeum vulgare GN=NAS2 PE=2 SV=1

 Score =  301 bits (771), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/280 (52%), Positives = 199/280 (71%), Gaps = 9/280 (3%)

Query: 1   MVCQN----DALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQ 56
           M  QN    DALV+K+  L+  I+ L SL P  DV+ LFT LV  C+PP+ P+DVTKL  
Sbjct: 1   MAAQNNQEVDALVEKITGLHAAIAKLPSLSPSPDVDALFTELVTACVPPS-PVDVTKLGP 59

Query: 57  SVQDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQ 116
             Q++R  LIRLC EAEG LE+H+S +LA+F+ P+ +L +FPYY+NYI LS+LE+ +L +
Sbjct: 60  EAQEMREGLIRLCSEAEGKLEAHYSDMLAAFDKPLDHLGMFPYYNNYINLSKLEYELLAR 119

Query: 117 HC--SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS 174
           +      P ++AFIGSGPLP +S VLA  HL  T FDNYD+  +AN +A  L  +D D+ 
Sbjct: 120 YVPGGYRPARVAFIGSGPLPFSSFVLAARHLPDTMFDNYDLCGAANDRASKLFRADRDVG 179

Query: 175 TRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG 234
            RM FHT D+ +++  L  Y+VVFLAALVGM  ++K +VI HL  +MA GA L++RSAHG
Sbjct: 180 ARMSFHTADVADLAGELAKYDVVFLAALVGMAAEDKAKVIAHLGAHMADGAALVVRSAHG 239

Query: 235 ARAFLYPVVDPSDL--LGFEVLSVFHPTDEVINSVVLARK 272
           AR FLYP+VDP D+   GFEVL+V HP D+V+NSV++A+K
Sbjct: 240 ARGFLYPIVDPQDIGRGGFEVLAVCHPDDDVVNSVIIAQK 279

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
89243481	325	nicotianamine synthase [Malus xiaojinens	0.996	0.975	0.739	1e-135
224123744	321	predicted protein [Populus trichocarpa]	0.996	0.987	0.732	1e-135
255542894	320	Nicotianamine synthase, putative [Ricinu	0.996	0.990	0.747	1e-135
356505769	321	PREDICTED: nicotianamine synthase-like [	0.996	0.987	0.717	1e-133
255642565	321	unknown [Glycine max]	0.996	0.987	0.714	1e-132
356572930	315	PREDICTED: nicotianamine synthase-like [	0.987	0.996	0.722	1e-130
225450591	308	PREDICTED: nicotianamine synthase [Vitis	0.968	1.0	0.726	1e-129
147778256	308	hypothetical protein VITISV_020491 [Viti	0.968	1.0	0.723	1e-129
27151627	317	RecName: Full=Nicotianamine synthase; Al	0.987	0.990	0.682	1e-123
255556350	324	Nicotianamine synthase, putative [Ricinu	0.996	0.978	0.641	1e-120

>gi|89243481|gb|ABD64879.1| nicotianamine synthase [Malus xiaojinensis]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/326 (73%), Positives = 279/326 (85%), Gaps = 9/326 (2%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
           M CQ DALV++VCELYE+IS LESLKP +DV+MLFT LV+TC+PP+ PIDV+KLCQ VQ+
Sbjct: 1   MCCQGDALVQRVCELYEKISSLESLKPSQDVDMLFTQLVLTCIPPS-PIDVSKLCQGVQE 59

Query: 61  IRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSR 120
           IRS LIRLCGEAEGLLE+HFS+IL S+E+P+ +L+IFPYYSNY+KLS+LEFNIL+QH +R
Sbjct: 60  IRSNLIRLCGEAEGLLENHFSTILGSYEHPLDHLDIFPYYSNYLKLSKLEFNILSQHFTR 119

Query: 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180
            P KIAF+GSGPLPLTSIVLA NHLT T FDNYDI+ SANSKAL LVSSDPDLS RM FH
Sbjct: 120 MPIKIAFVGSGPLPLTSIVLASNHLTKTSFDNYDINASANSKALGLVSSDPDLSKRMVFH 179

Query: 181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240
           TTDIM+V++ALKDYE+VFLAALVGMDK EK+++IDHLAKYMAPGA LMLRSAHGARAFLY
Sbjct: 180 TTDIMDVTTALKDYEIVFLAALVGMDKMEKLKIIDHLAKYMAPGATLMLRSAHGARAFLY 239

Query: 241 PVVDP-SDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLE------QQDQLSPKILPKKC 293
           PV+DP  DL GFEVLSVFHPTDEVINS+V+ARKY +P         Q       ILP KC
Sbjct: 240 PVIDPCDDLRGFEVLSVFHPTDEVINSIVIARKYALPVQHSSPIDSQGLNAGAIILPSKC 299

Query: 294 SKIEAFNPLH-HGSMIDELAIEEQLS 318
            ++EAFNPLH HG+MI+E A EEQLS
Sbjct: 300 CELEAFNPLHKHGNMIEEFAFEEQLS 325

Source: Malus xiaojinensis

Species: Malus xiaojinensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123744|ref|XP_002330197.1| predicted protein [Populus trichocarpa] gi|222871653|gb|EEF08784.1| predicted protein [Populus trichocarpa]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/322 (73%), Positives = 281/322 (87%), Gaps = 5/322 (1%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
           MVCQ + LV+KVC+LYEQIS LESLKP KDV+MLFT LV+TC+PPN PIDV KLC+ +Q+
Sbjct: 1   MVCQKEPLVQKVCDLYEQISSLESLKPSKDVDMLFTQLVLTCIPPN-PIDVNKLCKKIQE 59

Query: 61  IRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSR 120
           +RSKLIRLCGEAEG LESHFS+IL S+ENP+ +LN+FPYYSNY+KLS LEFNIL QHC+ 
Sbjct: 60  MRSKLIRLCGEAEGHLESHFSAILGSYENPLDHLNVFPYYSNYLKLSHLEFNILKQHCTN 119

Query: 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180
            P+K+AF+GSGPLPL+SIVLA NHLT T F NYDIDPSANSKAL LV+S PDLS+RMFFH
Sbjct: 120 VPSKVAFVGSGPLPLSSIVLACNHLTATSFHNYDIDPSANSKALQLVTSHPDLSSRMFFH 179

Query: 181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240
           TTDIM+V+S L++++VVFLAALVGMDK+EK++VIDHLAK MAPGA+LMLRSAHGARAFLY
Sbjct: 180 TTDIMDVTSELQEFDVVFLAALVGMDKEEKVKVIDHLAKQMAPGAILMLRSAHGARAFLY 239

Query: 241 PVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMP--SLEQQDQ--LSPKILPKKCSKI 296
           PV+DP DL GFEVLSVFHP+DEVINSVV+ARKY +P  S++QQ     S  +LP KC +I
Sbjct: 240 PVIDPCDLRGFEVLSVFHPSDEVINSVVIARKYSLPINSIDQQQTGLGSMIVLPNKCCEI 299

Query: 297 EAFNPLHHGSMIDELAIEEQLS 318
            AFNPL H +M++ELA+EEQ S
Sbjct: 300 LAFNPLSHVTMVEELAVEEQHS 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542894|ref|XP_002512510.1| Nicotianamine synthase, putative [Ricinus communis] gi|223548471|gb|EEF49962.1| Nicotianamine synthase, putative [Ricinus communis]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/321 (74%), Positives = 280/321 (87%), Gaps = 4/321 (1%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
           M CQ + L++KVC+LY QIS LESLKP KDV+MLFTNLV+TCMPPN PIDV KLC+ +Q+
Sbjct: 1   MGCQEELLIQKVCDLYHQISSLESLKPSKDVDMLFTNLVLTCMPPN-PIDVNKLCKKIQE 59

Query: 61  IRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSR 120
           +RSKLIRLCGEAEG LE+HFS+IL SF+NP+ +LNIFPYYSNY+KLS LEF IL QH   
Sbjct: 60  MRSKLIRLCGEAEGHLETHFSTILGSFDNPLDHLNIFPYYSNYLKLSHLEFTILRQHYPH 119

Query: 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180
            P++IAF+GSGPLPLTSIVLA NHLTTT F N+DIDPSAN  AL LVSS PDLS RMFFH
Sbjct: 120 APSQIAFVGSGPLPLTSIVLASNHLTTTSFHNFDIDPSANLNALRLVSSHPDLSKRMFFH 179

Query: 181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240
           TTDIMNV + L++++VVFLAALVGMDK+EKIRVIDHLAKYMAPGA+LMLRSAHGARAFLY
Sbjct: 180 TTDIMNVENGLQEFDVVFLAALVGMDKEEKIRVIDHLAKYMAPGAILMLRSAHGARAFLY 239

Query: 241 PVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMP--SLEQQDQLSPK-ILPKKCSKIE 297
           PVVDP DL GFEVLSVFHPTDEVINSVV+A+K+ +P  S++QQ  +    ILP KCS+I+
Sbjct: 240 PVVDPCDLRGFEVLSVFHPTDEVINSVVIAQKHQLPIQSIDQQVFVPNNIILPSKCSEIQ 299

Query: 298 AFNPLHHGSMIDELAIEEQLS 318
           AFNPL+HG+MI+ELAIE+QLS
Sbjct: 300 AFNPLNHGNMIEELAIEDQLS 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505769|ref|XP_003521662.1| PREDICTED: nicotianamine synthase-like [Glycine max]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/322 (71%), Positives = 278/322 (86%), Gaps = 5/322 (1%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
           MVC+ + L++KVC +YEQIS LESLKPCK+V+MLFT LV+TC+PP+ PI+VTKL ++VQD
Sbjct: 1   MVCEEELLIEKVCSIYEQISSLESLKPCKNVDMLFTKLVLTCIPPS-PIEVTKLNKTVQD 59

Query: 61  IRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSR 120
           IRS LI+LCGEAEG LESH+S+IL S++NP+ +LNIFPYYSNY+KL  LEF IL+QHC+ 
Sbjct: 60  IRSHLIKLCGEAEGHLESHYSTILGSYQNPLHHLNIFPYYSNYLKLGLLEFTILSQHCTH 119

Query: 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180
            PTK+AF+GSGPLPLTSIVLA NHL +T F NYD+DPSANS A+ LVSSDPDLS RMFFH
Sbjct: 120 VPTKVAFVGSGPLPLTSIVLASNHLPSTTFHNYDMDPSANSNAMRLVSSDPDLSKRMFFH 179

Query: 181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240
           T DI+ VS+ALK+YEVV+LAALVGMDK+ K R+IDHL K+M PGALLMLRSAHGARAFLY
Sbjct: 180 TNDILEVSTALKEYEVVYLAALVGMDKEGKNRIIDHLGKHMNPGALLMLRSAHGARAFLY 239

Query: 241 PVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMP----SLEQQDQLSPKILPKKCSKI 296
           PVV+P DL GFEVLSVFHP+DEV+NSVV+ARK   P    SL+QQ  +   ILP KCS+I
Sbjct: 240 PVVEPCDLRGFEVLSVFHPSDEVVNSVVIARKLYHPVPMHSLDQQALVGSMILPNKCSEI 299

Query: 297 EAFNPLHHGSMIDELAIEEQLS 318
           +AFNPL+HG+MI+ELA+EEQLS
Sbjct: 300 QAFNPLNHGNMIEELAVEEQLS 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255642565|gb|ACU21546.1| unknown [Glycine max]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/322 (71%), Positives = 276/322 (85%), Gaps = 5/322 (1%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
           MVC+ + L++KVC +YEQIS LESLKPCK+V+MLFT LV+TC+PP+ PI+VTKL ++VQD
Sbjct: 1   MVCEEELLIEKVCSIYEQISSLESLKPCKNVDMLFTKLVLTCIPPS-PIEVTKLNKTVQD 59

Query: 61  IRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSR 120
           IRS LI+LCGEAEG LESH+ +IL S+ NP+ +LNIFPYYSNY+KL  LEF IL+QHC+ 
Sbjct: 60  IRSHLIKLCGEAEGHLESHYPTILGSYLNPLHHLNIFPYYSNYLKLGLLEFTILSQHCTH 119

Query: 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180
            PTK+AF+GSGPLPLTSIVLA NHL +T F NYD+DPSANS A+ LVSSDPDLS RMFFH
Sbjct: 120 VPTKVAFVGSGPLPLTSIVLASNHLPSTTFHNYDMDPSANSNAMRLVSSDPDLSKRMFFH 179

Query: 181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240
           T DI+ VS+ALK+YEVV+LAALVGMDK+ K R+IDHL K+M PGALLMLRSAHGARAFLY
Sbjct: 180 TNDILEVSTALKEYEVVYLAALVGMDKEGKNRIIDHLGKHMNPGALLMLRSAHGARAFLY 239

Query: 241 PVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMP----SLEQQDQLSPKILPKKCSKI 296
           PVV+P DL GFEVLSVFHP+DEV+NSVV+ARK   P    SL+QQ  +   ILP KCS+I
Sbjct: 240 PVVEPCDLRGFEVLSVFHPSDEVVNSVVIARKLYHPVPMHSLDQQALVGSMILPNKCSEI 299

Query: 297 EAFNPLHHGSMIDELAIEEQLS 318
           +AFNPL+HG+MI+ELA+EEQLS
Sbjct: 300 QAFNPLNHGNMIEELAVEEQLS 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572930|ref|XP_003554618.1| PREDICTED: nicotianamine synthase-like [Glycine max]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/317 (72%), Positives = 273/317 (86%), Gaps = 3/317 (0%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
           MVC+ + L++KVC LYEQIS LESLKPCK+V+MLFT LV+TC+PP+ PIDVTKL ++VQD
Sbjct: 1   MVCEEELLIEKVCSLYEQISSLESLKPCKNVDMLFTKLVLTCIPPS-PIDVTKLNKTVQD 59

Query: 61  IRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSR 120
           IRS LI+LCGEAEG LESH+S+IL S++ P+ +LNIFPYYSNY+KL  LEF IL+QHC+ 
Sbjct: 60  IRSHLIKLCGEAEGHLESHYSTILGSYDKPLNHLNIFPYYSNYLKLGHLEFTILSQHCTH 119

Query: 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180
            PTK+AF+GSGPLPLTSIVLA NHL +T F NYD+DP ANS A+ LVSSDPDLS RMFFH
Sbjct: 120 VPTKVAFVGSGPLPLTSIVLASNHLPSTTFHNYDMDPLANSNAMRLVSSDPDLSKRMFFH 179

Query: 181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240
           T DI+ VS+ALK+YEVV+LAALVGMDK+ K R+IDHL K+M PGALLMLRSAHGARAFLY
Sbjct: 180 TNDILEVSNALKEYEVVYLAALVGMDKEGKNRIIDHLGKHMNPGALLMLRSAHGARAFLY 239

Query: 241 PVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKILPKKCSKIEAFN 300
           PVV+P D  GFEVLSVFHP+DEVINSVV+ARK +  SLE Q  +   ILP KCS+I+AFN
Sbjct: 240 PVVEPCDFRGFEVLSVFHPSDEVINSVVIARK-LYHSLE-QGLVGSMILPNKCSEIQAFN 297

Query: 301 PLHHGSMIDELAIEEQL 317
           PL+HG+MI+ELA+EEQL
Sbjct: 298 PLNHGNMIEELAVEEQL 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450591|ref|XP_002282175.1| PREDICTED: nicotianamine synthase [Vitis vinifera]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/315 (72%), Positives = 267/315 (84%), Gaps = 7/315 (2%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
           M CQ++ LV+KVCE+YE+IS LESLKP KDVNMLFT LV TCMPP+ PIDVTKLC+ VQ+
Sbjct: 1   MGCQDELLVEKVCEMYEKISRLESLKPSKDVNMLFTQLVRTCMPPS-PIDVTKLCKRVQE 59

Query: 61  IRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSR 120
           +RSKLIRLCGEAEGLLE HFS+IL S+ENP+ +LN+FPYYSNY+KLS LEF +L+Q+C+ 
Sbjct: 60  MRSKLIRLCGEAEGLLEGHFSTILGSYENPLDHLNLFPYYSNYLKLSLLEFTLLSQNCTH 119

Query: 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180
            P+KIAF+GSGPLPLTSIVLA  HLTTT F NYDIDP+ANS A  LVSSDPD S RM FH
Sbjct: 120 VPSKIAFVGSGPLPLTSIVLASYHLTTTSFHNYDIDPAANSMAAHLVSSDPDFSKRMLFH 179

Query: 181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240
           TTDIMNV++ LK+Y+VV+LAALVGMDK+EKI+V+DHLAK+MAPGALLMLRSAHGARAFLY
Sbjct: 180 TTDIMNVTNELKEYDVVYLAALVGMDKEEKIQVMDHLAKHMAPGALLMLRSAHGARAFLY 239

Query: 241 PVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKILPKKCSKIEAFN 300
           PV+DP DL GFEVLS+FHPTDEVINSVV+ARK+ M        L P ILP KCS+I+ FN
Sbjct: 240 PVIDPCDLRGFEVLSIFHPTDEVINSVVVARKFPMHVHSLDQGLGPMILPSKCSEIQVFN 299

Query: 301 PLHHGSMIDELAIEE 315
           PL      +EL IEE
Sbjct: 300 PL------EELTIEE 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778256|emb|CAN65138.1| hypothetical protein VITISV_020491 [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/315 (72%), Positives = 266/315 (84%), Gaps = 7/315 (2%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
           M CQ++ LV+KVCE+YE+IS  ESLKP KDVNMLFT LV TCMPP+ PIDVTKLC+ VQ+
Sbjct: 1   MGCQDELLVEKVCEMYEKISRFESLKPSKDVNMLFTQLVRTCMPPS-PIDVTKLCKRVQE 59

Query: 61  IRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSR 120
           +RSKLIRLCGEAEGLLE HFS+IL S+ENP+ +LN+FPYYSNY+KLS LEF +L+Q+C+ 
Sbjct: 60  MRSKLIRLCGEAEGLLEGHFSTILGSYENPLDHLNLFPYYSNYLKLSLLEFTLLSQNCTH 119

Query: 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180
            P+KIAF+GSGPLPLTSIVLA  HLTTT F NYDIDP+ANS A  LV+SDPD S RM FH
Sbjct: 120 VPSKIAFVGSGPLPLTSIVLASYHLTTTTFHNYDIDPAANSMAAHLVASDPDFSKRMLFH 179

Query: 181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240
           TTDIMNV++ LK+Y+VV+LAALVGMDK+EKI+V+DHLAKYMAPGALLMLRSAHGARAFLY
Sbjct: 180 TTDIMNVTNELKEYDVVYLAALVGMDKEEKIQVMDHLAKYMAPGALLMLRSAHGARAFLY 239

Query: 241 PVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKILPKKCSKIEAFN 300
           PV+DP DL GFEVLS+FHPTDEVINSVV+ARK+ M        L P ILP KCS+I+ FN
Sbjct: 240 PVIDPCDLRGFEVLSIFHPTDEVINSVVVARKFPMHVHSLDQGLGPMILPSKCSEIQVFN 299

Query: 301 PLHHGSMIDELAIEE 315
           PL      +EL IEE
Sbjct: 300 PL------EELTIEE 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27151627|sp|Q9XGI7.1|NAS_SOLLC RecName: Full=Nicotianamine synthase; AltName: Full=Chloronerva; AltName: Full=S-adenosyl-L-methionine:S-adenosyl-L-methionine:S- adenosyl-methionine 3-amino-3-carboxypropyltransferase gi|4753801|emb|CAB42052.1| nicotianamine synthase [Solanum lycopersicum]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/318 (68%), Positives = 269/318 (84%), Gaps = 4/318 (1%)

Query: 1   MVCQN-DALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQ 59
           MVC N + +V+KVCELYEQIS LE+L P KDVN+LFT+LV TCMPPN PIDV+KLCQ +Q
Sbjct: 1   MVCPNSNPVVEKVCELYEQISRLENLSPSKDVNVLFTDLVHTCMPPN-PIDVSKLCQKIQ 59

Query: 60  DIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCS 119
           +IRS LI+LCG+AEGLLESHFS IL+S+ENP+ +L+IFPY+ NYIKLS LE+NILT++ +
Sbjct: 60  EIRSHLIKLCGQAEGLLESHFSKILSSYENPLQHLHIFPYFDNYIKLSLLEYNILTKNTT 119

Query: 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFF 179
             P KIAFIGSGPLPLTS+VLA  HL TTCF NYDID  AN  A +LV++DPD+S+RM F
Sbjct: 120 NIPKKIAFIGSGPLPLTSLVLATKHLKTTCFHNYDIDVDANFMASALVAADPDMSSRMTF 179

Query: 180 HTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFL 239
           HT D+M+V+ ALKDY+VVFLAALVGMDK++K++V+DHLAKYM+PGA LMLRSAHGARAFL
Sbjct: 180 HTADVMDVTCALKDYDVVFLAALVGMDKEDKVKVVDHLAKYMSPGATLMLRSAHGARAFL 239

Query: 240 YPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKILPKK--CSKIE 297
           YPV+DP DL GFEVLSV+HPTDEVINSV++ARK  +PS+   D L   +LP K  C++I 
Sbjct: 240 YPVLDPRDLRGFEVLSVYHPTDEVINSVIIARKLPVPSVPLLDGLGAYVLPSKCACAEIH 299

Query: 298 AFNPLHHGSMIDELAIEE 315
           AFNPL+  ++++E A+EE
Sbjct: 300 AFNPLNKMNLVEEFALEE 317

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556350|ref|XP_002519209.1| Nicotianamine synthase, putative [Ricinus communis] gi|223541524|gb|EEF43073.1| Nicotianamine synthase, putative [Ricinus communis]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/318 (64%), Positives = 258/318 (81%), Gaps = 1/318 (0%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
           M CQ + L++KVCE+Y  IS L +L P K VN LFT LV  CMP    ID+TKL + +Q+
Sbjct: 1   MGCQEELLIEKVCEIYGNISVLANLSPSKHVNSLFTQLVHICMP-QCQIDITKLSERIQE 59

Query: 61  IRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSR 120
           IRSKLI+LCG+AEGLLESHFS+I+ S ENP+ ++ +FPYYSNY+KLSQLEF++L +HC++
Sbjct: 60  IRSKLIKLCGQAEGLLESHFSTIIGSHENPLHHIRLFPYYSNYLKLSQLEFSMLGKHCTK 119

Query: 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180
            P  +AF+GSGPLPLT+I+LA NH +TTCF NYDIDPSANS+AL LVSSDP+LS RMFFH
Sbjct: 120 VPNSVAFVGSGPLPLTTIILATNHFSTTCFHNYDIDPSANSQALQLVSSDPNLSERMFFH 179

Query: 181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240
           T +IM+VSS+L +YEVV LAALVGMDK EK++VI HLA++MAPGA+L+LRSAHGARAFLY
Sbjct: 180 TANIMSVSSSLTEYEVVILAALVGMDKKEKVQVIKHLAEHMAPGAILLLRSAHGARAFLY 239

Query: 241 PVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKILPKKCSKIEAFN 300
           PV+DP DL GFEVLSVFHPTDEVINSV++ARK++         +   +LP KCS I+ F 
Sbjct: 240 PVIDPQDLEGFEVLSVFHPTDEVINSVIIARKFLRAVHSLNTGIGSALLPSKCSDIQGFK 299

Query: 301 PLHHGSMIDELAIEEQLS 318
           P+ H ++I+EL ++EQ S
Sbjct: 300 PITHTNLIEELTVDEQQS 317

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
TAIR|locus:2195301	320	NAS3 "AT1G09240" [Arabidopsis	0.993	0.987	0.618	2.7e-100
TAIR|locus:2010718	324	NAS4 "nicotianamine synthase 4	0.984	0.966	0.617	9.1e-100
TAIR|locus:2175304	320	NAS1 "AT5G04950" [Arabidopsis	0.987	0.981	0.581	5.3e-95
TAIR|locus:2161770	320	NAS2 "AT5G56080" [Arabidopsis	0.981	0.975	0.575	9e-93

TAIR|locus:2195301 NAS3 "AT1G09240" [Arabidopsis thaliana (taxid:3702)]

 Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
 Identities = 199/322 (61%), Positives = 255/322 (79%)

Query:     1 MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
             M CQ++ LV+ +C+LYE+IS LESLKP +DVN+LF  LV TC+PPN  IDVTK+C  VQ+
Sbjct:     1 MGCQDEQLVQTICDLYEKISKLESLKPSEDVNILFKQLVSTCIPPNPNIDVTKMCDRVQE 60

Query:    61 IRSKLIRLCGEAEGLLESHFSSILASFE-NPIANLNIFPYYSNYIKLSQLEFNILTQHCS 119
             IR  LI++CG AEG LE+HFSSIL S++ NP+ +LNIFPYY+NY+KL +LEF++L Q+ +
Sbjct:    61 IRLNLIKICGLAEGHLENHFSSILTSYQDNPLHHLNIFPYYNNYLKLGKLEFDLLEQNLN 120

Query:   120 RF-PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMF 178
              F P  +AFIGSGPLPLTSIVLA  HL  T F N+DIDPSANS A  LVSSDPD+S RMF
Sbjct:   121 GFVPKSVAFIGSGPLPLTSIVLASFHLKDTIFHNFDIDPSANSLASLLVSSDPDISQRMF 180

Query:   179 FHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAF 238
             FHT DIM+V+ +LK ++VVFLAALVGM+K+EK++VI+HL K+MAPGA+LMLRSAHG RAF
Sbjct:   181 FHTVDIMDVTESLKSFDVVFLAALVGMNKEEKVKVIEHLQKHMAPGAVLMLRSAHGPRAF 240

Query:   239 LYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKIL-PKKCSKIE 297
             LYP+V+P DL GFEVLS++HPTD+VINSVV+++K+ + S+      +  +L P  CSK  
Sbjct:   241 LYPIVEPCDLQGFEVLSIYHPTDDVINSVVISKKHPVVSIGNVGGPNSCLLKPCNCSKTH 300

Query:   298 AFNPLHHGSMIDEL-AIEEQLS 318
             A   ++   MI+E  A EEQLS
Sbjct:   301 A--KMNKNMMIEEFGAREEQLS 320

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IDA

GO:0030418 "nicotianamine biosynthetic process" evidence=IDA

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

TAIR|locus:2010718 NAS4 "nicotianamine synthase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
 Identities = 200/324 (61%), Positives = 253/324 (78%)

Query:     3 CQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIR 62
             CQ+D LV K+C+LYE+IS LE+LKPC+DV+ LF  LV TC+PPN  IDVTK+ +++Q++R
Sbjct:     4 CQDDQLVNKICDLYEKISKLETLKPCEDVDTLFKQLVSTCIPPNPNIDVTKMSENIQEMR 63

Query:    63 SKLIRLCGEAEGLLESHFSSILASFE-NPIANLNIFPYYSNYIKLSQLEFNILTQHCSRF 121
             S LI++CGEAEG LE HFSSIL SFE NP+ +LN+FPYY+NY+KLS+LEF++L Q+ + F
Sbjct:    64 SNLIKICGEAEGYLEHHFSSILTSFEDNPLHHLNLFPYYNNYLKLSKLEFDLLEQNLNGF 123

Query:   122 -PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180
              P  +AFIGSGPLPLTS+VLA +HL  + F N+DIDPSAN  A  LVSSDPDLS RMFFH
Sbjct:   124 VPRTVAFIGSGPLPLTSVVLASSHLKDSIFHNFDIDPSANMVAARLVSSDPDLSQRMFFH 183

Query:   181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240
             T DIM+V+ +LK ++VVFLAALVGMDK EK++V++HL K+M+PGALLMLRSAHG RAFLY
Sbjct:   184 TVDIMDVTESLKGFDVVFLAALVGMDKKEKVKVVEHLEKHMSPGALLMLRSAHGPRAFLY 243

Query:   241 PVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSL----EQQDQLSPKILPKKCSKI 296
             P+V+P DL GFEVLSV+HPTDEVINS+V++RK    +     +  DQ S   L   CSKI
Sbjct:   244 PIVEPCDLEGFEVLSVYHPTDEVINSIVISRKLGEDANGVVHDHIDQASD--LACNCSKI 301

Query:   297 EAFNPLHHGSMIDELA--IEEQLS 318
                      S+I+E A   EEQL+
Sbjct:   302 HVIMNKKK-SIIEEFAGANEEQLT 324

GO:0005634 "nucleus" evidence=ISM

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IGI

GO:0030418 "nicotianamine biosynthetic process" evidence=IGI

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

TAIR|locus:2175304 NAS1 "AT5G04950" [Arabidopsis thaliana (taxid:3702)]

 Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
 Identities = 186/320 (58%), Positives = 242/320 (75%)

Query:     1 MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
             M CQN+ +VK++ +LY+QIS L+SLKP K+V+ LF  LV TC+P +  IDVT +C+ V+D
Sbjct:     1 MACQNNLVVKQIIDLYDQISKLKSLKPSKNVDTLFGQLVSTCLPTDTNIDVTNMCEEVKD 60

Query:    61 IRSKLIRLCGEAEGLLESHFSSILASFE---NPIANLNIFPYYSNYIKLSQLEFNILTQH 117
             +R+ LI+LCGEAEG LE HFS+IL S +   NP+ +L+IFPYYSNY+KL +LEF++L+QH
Sbjct:    61 MRANLIKLCGEAEGYLEQHFSTILGSLQEDQNPLDHLHIFPYYSNYLKLGKLEFDLLSQH 120

Query:   118 CSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRM 177
              S  PTKIAF+GSGP+PLTSIVLA  HL  T F N+DID  AN+ A +LVS DPDLS RM
Sbjct:   121 SSHVPTKIAFVGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDPDLSKRM 180

Query:   178 FFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARA 237
              FHTTD++N +  L  Y+VVFLAALVGMDK+ K++ I+HL K+MAPGA+LMLRSAH  RA
Sbjct:   181 IFHTTDVLNATEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVLMLRSAHALRA 240

Query:   238 FLYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSP-KILPKKCSKI 296
             FLYP+VD SDL GF++L+++HPTD+V+NSVV+ARK   P+    +       +P  CSKI
Sbjct:   241 FLYPIVDSSDLKGFQLLTIYHPTDDVVNSVVIARKLGGPTTPGVNGTRGCMFMPCNCSKI 300

Query:   297 EAF-NPLHHGSMIDEL-AIE 314
              A  N     +MI+E  AIE
Sbjct:   301 HAIMNNRGKKNMIEEFSAIE 320

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IDA

GO:0030418 "nicotianamine biosynthetic process" evidence=IDA

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

TAIR|locus:2161770 NAS2 "AT5G56080" [Arabidopsis thaliana (taxid:3702)]

 Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
 Identities = 183/318 (57%), Positives = 241/318 (75%)

Query:     1 MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLC-QSVQ 59
             M C+N+ +VK++ +LY QIS LESLKP K+V+ LF  LV TC+P +  IDVT++  + V+
Sbjct:     1 MACENNLVVKQIMDLYNQISNLESLKPSKNVDTLFRQLVSTCLPTDTNIDVTEIHDEKVK 60

Query:    60 DIRSKLIRLCGEAEGLLESHFSSILASFE-NPIANLNIFPYYSNYIKLSQLEFNILTQHC 118
             D+RS LI+LCGEAEG LE HFS+IL SFE NP+ +L+IFPYY+NY+KL +LEF++L+QH 
Sbjct:    61 DMRSHLIKLCGEAEGYLEQHFSAILGSFEDNPLNHLHIFPYYNNYLKLGKLEFDLLSQHT 120

Query:   119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMF 178
             +  PTK+AFIGSGP+PLTSIVLA  HL  T F N+DID  AN+ A +LVS D DLS RM 
Sbjct:   121 THVPTKVAFIGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDSDLSKRMI 180

Query:   179 FHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAF 238
             FHTTD++N    L  Y+VVFLAALVGMDK+ K++ I+HL K+MAPGA++MLRSAHG RAF
Sbjct:   181 FHTTDVLNAKEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVVMLRSAHGLRAF 240

Query:   239 LYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSP-KILPKKCSKIE 297
             LYP+VD  DL GFEVL+++HP+D+V+NSVV+ARK    +  +  Q+    ++P  CSK+ 
Sbjct:   241 LYPIVDSCDLKGFEVLTIYHPSDDVVNSVVIARKLGGSNGARGSQIGRCVVMPCNCSKVH 300

Query:   298 AFNPLHHGSMIDELAIEE 315
             A   L++  M   L IEE
Sbjct:   301 AI--LNNRGMEKNL-IEE 315


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      318       318   0.00083  116 3  11 22  0.36    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  205 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.88u 0.14s 26.02t   Elapsed:  00:00:01
  Total cpu time:  25.88u 0.14s 26.02t   Elapsed:  00:00:01
  Start:  Mon May 20 17:57:46 2013   End:  Mon May 20 17:57:47 2013

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IDA

GO:0030418 "nicotianamine biosynthetic process" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP;RCA

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZQV6	NAS4_HORVU	2, ., 5, ., 1, ., 4, 3	0.5350	0.8301	0.8024	N/A	no
A2XFU5	NAS2_ORYSI	2, ., 5, ., 1, ., 4, 3	0.5053	0.8522	0.8312	N/A	no
Q9ZQV3	NAS6_HORVU	2, ., 5, ., 1, ., 4, 3	0.5232	0.8490	0.8231	N/A	no
Q9XFB6	NAS8_HORVU	2, ., 5, ., 1, ., 4, 3	0.5268	0.8522	0.8237	N/A	no
Q9XFB7	NAS9_HORVU	2, ., 5, ., 1, ., 4, 3	0.5239	0.9056	0.8470	N/A	no
Q9ZQV7	NAS2_HORVU	2, ., 5, ., 1, ., 4, 3	0.5285	0.8522	0.8089	N/A	no
Q9XGI7	NAS_SOLLC	2, ., 5, ., 1, ., 4, 3	0.6823	0.9874	0.9905	N/A	no
Q9ZWH8	NAS7_HORVU	2, ., 5, ., 1, ., 4, 3	0.5313	0.8333	0.8054	N/A	no
Q0D3F2	NAS3_ORYSJ	2, ., 5, ., 1, ., 4, 3	0.4984	0.9622	0.8921	yes	no
Q9C7X5	NAS4_ARATH	2, ., 5, ., 1, ., 4, 3	0.6172	0.9842	0.9660	yes	no
Q9ZQV9	NAS1_HORVU	2, ., 5, ., 1, ., 4, 3	0.5017	0.8679	0.8414	N/A	no
Q9ZQV8	NAS3_HORVU	2, ., 5, ., 1, ., 4, 3	0.5428	0.8522	0.8089	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	0.976
3rd Layer	2.5.1.43	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01330116 hypothetical protein (321 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	318
PLN03075	296	PLN03075, PLN03075, nicotianamine synthase; Provis	0.0
pfam03059	277	pfam03059, NAS, Nicotianamine synthase protein	1e-158

>gnl|CDD|178624 PLN03075, PLN03075, nicotianamine synthase; Provisional

 Score =  507 bits (1307), Expect = 0.0
 Identities = 203/294 (69%), Positives = 247/294 (84%), Gaps = 2/294 (0%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQD 60
           M CQ + LV+K+C+LY QIS LESLKP K+VN LFT LV TC+PP+  IDVTKLC+ +Q+
Sbjct: 4   MGCQEELLVEKICDLYAQISKLESLKPSKEVNTLFTQLVSTCIPPS-SIDVTKLCEEIQE 62

Query: 61  IRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSR 120
           +RSKLI+LCGEAEGLLE+HFS+IL SF+NP+ +LN+FPYY+NY+KLS+LEF++L+QH + 
Sbjct: 63  MRSKLIKLCGEAEGLLEAHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNG 122

Query: 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180
            PTK+AF+GSGPLPLTSIVLA +HL TT F N+DIDPSAN  A  LVSSDPDLS RMFFH
Sbjct: 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFH 182

Query: 181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240
           T D+M+V+ +LK+Y+VVFLAALVGMDK+EK++VI+HL K+MAPGALLMLRSAHGARAFLY
Sbjct: 183 TADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLY 242

Query: 241 PVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLSPKI-LPKKC 293
           PVVDP DL GFEVLSVFHPTDEVINSV++ARK   P       +   + LP  C
Sbjct: 243 PVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPGGPVGSGVAGIGGVVSLPCNC 296

Length = 296

>gnl|CDD|217343 pfam03059, NAS, Nicotianamine synthase protein

 Score =  443 bits (1141), Expect = e-158
 Identities = 180/278 (64%), Positives = 225/278 (80%), Gaps = 4/278 (1%)

Query: 3   CQN---DALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQ 59
            +N   +ALV+K+ +LY  IS L SL P  DVN LFT LV TC+PP+ P+DVTKL   +Q
Sbjct: 1   AENLLSEALVEKILDLYAAISKLPSLSPSPDVNALFTQLVTTCIPPS-PVDVTKLGPEIQ 59

Query: 60  DIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCS 119
           +IRS LIRLC  AEGLLESH+S ILA+F+NP+ +L IFPYY NY+KLS+LE+++L++H +
Sbjct: 60  EIRSLLIRLCSTAEGLLESHYSDILAAFDNPLDHLEIFPYYKNYLKLSKLEYDLLSRHVT 119

Query: 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFF 179
             P++IAFIGSGPLPLTS+VLA  HL  T FDNYDI   AN +A  LVS+D DLS+RM F
Sbjct: 120 GVPSRIAFIGSGPLPLTSLVLASYHLPDTSFDNYDICGLANDRASKLVSADGDLSSRMSF 179

Query: 180 HTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFL 239
           HT D+++V++ LK Y+VVFLAALVGMDK+EK +VIDHL K+MAPGA L+LRSAHGARAFL
Sbjct: 180 HTADVLDVTTELKAYDVVFLAALVGMDKEEKAKVIDHLGKHMAPGAALVLRSAHGARAFL 239

Query: 240 YPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPS 277
           YPVVDP DL GFEVL+V+HP DEVINSV++ARK ++ S
Sbjct: 240 YPVVDPCDLRGFEVLAVYHPEDEVINSVIIARKKIVCS 277

Nicotianamine synthase EC:2.5.1.43 catalyzes the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold. Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
PLN03075	296	nicotianamine synthase; Provisional	100.0
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	100.0
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.76
PLN02244	340	tocopherol O-methyltransferase	99.69
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.68
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.67
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.64
COG4122	219	Predicted O-methyltransferase [General function pr	99.64
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.63
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.63
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.62
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.62
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.6
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.6
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.59
PLN02476	278	O-methyltransferase	99.59
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.58
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.56
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.56
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.55
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.54
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.53
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.53
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.52
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.5
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.5
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.5
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.49
PRK11207	197	tellurite resistance protein TehB; Provisional	99.48
PRK12335	287	tellurite resistance protein TehB; Provisional	99.48
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.47
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.46
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.45
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.45
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.45
PRK04457	262	spermidine synthase; Provisional	99.45
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.44
PRK08317	241	hypothetical protein; Provisional	99.44
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.43
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.43
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.43
PLN02336	475	phosphoethanolamine N-methyltransferase	99.42
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.41
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.4
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.4
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.39
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.38
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.38
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.38
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.36
PRK06922	677	hypothetical protein; Provisional	99.36
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.35
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.35
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.35
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.33
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.33
PLN02490	340	MPBQ/MSBQ methyltransferase	99.33
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.32
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.31
PRK07402	196	precorrin-6B methylase; Provisional	99.31
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.3
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.3
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.3
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.3
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.29
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.29
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	99.29
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.28
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.27
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.27
PRK00811	283	spermidine synthase; Provisional	99.24
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.24
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.23
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.22
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.22
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.22
PLN02366	308	spermidine synthase	99.21
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.21
TIGR03438	301	probable methyltransferase. This model represents	99.2
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.2
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.2
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.19
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.19
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.19
PRK05785	226	hypothetical protein; Provisional	99.19
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.18
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.18
PRK04266	226	fibrillarin; Provisional	99.18
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.18
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.18
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.18
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.18
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.17
PRK01581	374	speE spermidine synthase; Validated	99.17
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.17
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.16
PRK06202	232	hypothetical protein; Provisional	99.16
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.15
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.14
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.14
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.14
PLN02336	475	phosphoethanolamine N-methyltransferase	99.14
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.13
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.12
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.12
KOG1271	227	consensus Methyltransferases [General function pre	99.12
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.12
COG4123	248	Predicted O-methyltransferase [General function pr	99.11
PRK14968	188	putative methyltransferase; Provisional	99.08
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.08
PLN02823	336	spermine synthase	99.07
PRK14967	223	putative methyltransferase; Provisional	99.07
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.06
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.05
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.04
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.03
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.03
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.03
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.02
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.01
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.01
KOG4300	252	consensus Predicted methyltransferase [General fun	99.01
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.0
TIGR00438	188	rrmJ cell division protein FtsJ.	99.0
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.99
PRK03612	521	spermidine synthase; Provisional	98.98
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.97
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.96
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.96
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.96
PTZ00146	293	fibrillarin; Provisional	98.95
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.92
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.92
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.91
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.85
COG2890	280	HemK Methylase of polypeptide chain release factor	98.83
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.83
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.79
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.77
PRK00536	262	speE spermidine synthase; Provisional	98.77
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.77
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.77
PLN02672	1082	methionine S-methyltransferase	98.76
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.76
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.74
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.71
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.67
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.65
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.65
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.64
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.62
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.61
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.58
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.56
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.55
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.53
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.53
KOG2361	264	consensus Predicted methyltransferase [General fun	98.51
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.51
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.5
PHA03411	279	putative methyltransferase; Provisional	98.5
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.47
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.44
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.43
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.42
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.42
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.41
PHA03412	241	putative methyltransferase; Provisional	98.39
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.38
KOG2899	288	consensus Predicted methyltransferase [General fun	98.38
COG2521	287	Predicted archaeal methyltransferase [General func	98.37
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.35
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.34
KOG3010	261	consensus Methyltransferase [General function pred	98.32
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.32
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.31
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.31
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.29
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.28
PRK04148	134	hypothetical protein; Provisional	98.27
KOG2904	328	consensus Predicted methyltransferase [General fun	98.27
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.27
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.24
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.2
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.19
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.19
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.18
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.14
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.14
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.13
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	98.13
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.13
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.09
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.07
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.03
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.01
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.98
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.97
KOG2730	263	consensus Methylase [General function prediction o	97.97
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.97
COG2520	341	Predicted methyltransferase [General function pred	97.94
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.94
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.93
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.93
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.91
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.9
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.86
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.83
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.82
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.81
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.79
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.78
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.77
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	97.77
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.76
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.76
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.76
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.75
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.74
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.73
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.73
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.7
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.69
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.67
PF13679	141	Methyltransf_32: Methyltransferase domain	97.67
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.61
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.55
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.55
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.55
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.52
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.52
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	97.52
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.49
COG4076	252	Predicted RNA methylase [General function predicti	97.49
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.45
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.45
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.44
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.4
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.4
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.33
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.31
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.28
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.26
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.22
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.21
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.2
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.18
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	97.17
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	97.15
COG3897	218	Predicted methyltransferase [General function pred	97.12
PRK10742	250	putative methyltransferase; Provisional	97.12
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.11
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.11
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	97.1
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.09
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.09
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.08
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.05
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.02
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.01
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.98
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.97
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.96
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.96
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	96.96
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.93
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.87
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.87
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	96.84
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.79
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.78
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.77
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.73
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.62
KOG1331	293	consensus Predicted methyltransferase [General fun	96.61
PLN02740	381	Alcohol dehydrogenase-like	96.57
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.56
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.56
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.54
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.52
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.48
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.41
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.41
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.4
PLN02494	477	adenosylhomocysteinase	96.4
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	96.39
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.39
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.37
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.34
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	96.33
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.31
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.24
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.23
PRK07417	279	arogenate dehydrogenase; Reviewed	96.2
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.16
KOG2940	325	consensus Predicted methyltransferase [General fun	96.15
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	96.13
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.1
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.09
PLN02178	375	cinnamyl-alcohol dehydrogenase	96.08
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	96.02
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	95.98
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.97
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.97
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.95
PLN02827	378	Alcohol dehydrogenase-like	95.94
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	95.93
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.91
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.9
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	95.89
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.86
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	95.86
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	95.84
PRK11730	715	fadB multifunctional fatty acid oxidation complex	95.84
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	95.81
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	95.78
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	95.73
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.7
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.7
PLN02514	357	cinnamyl-alcohol dehydrogenase	95.67
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.67
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	95.66
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	95.66
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.64
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	95.62
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	95.61
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	95.6
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.6
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	95.59
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.57
KOG3201	201	consensus Uncharacterized conserved protein [Funct	95.56
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.55
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	95.55
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	95.54
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	95.53
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.52
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	95.52
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	95.51
PRK08507	275	prephenate dehydrogenase; Validated	95.49
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	95.43
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.42
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.38
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.38
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	95.38
KOG2352	482	consensus Predicted spermine/spermidine synthase [	95.38
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	95.37
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.35
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.31
PLN02256	304	arogenate dehydrogenase	95.28
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	95.21
PRK08324	681	short chain dehydrogenase; Validated	95.21
PRK12480	330	D-lactate dehydrogenase; Provisional	95.17
PLN02712	667	arogenate dehydrogenase	95.15
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.13
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	95.13
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.09
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	95.02
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	95.02
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	94.92
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	94.9
PRK08655	437	prephenate dehydrogenase; Provisional	94.88
PRK10083	339	putative oxidoreductase; Provisional	94.86
PRK09496	453	trkA potassium transporter peripheral membrane com	94.83
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	94.8
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.8
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	94.79
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.78
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	94.68
PRK10669	558	putative cation:proton antiport protein; Provision	94.66
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.64
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.63
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	94.58
PRK06545	359	prephenate dehydrogenase; Validated	94.57
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	94.57
PRK09496	453	trkA potassium transporter peripheral membrane com	94.55
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.52
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.51
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.5
PHA01634	156	hypothetical protein	94.47
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.44
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	94.44
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.42
PLN02688	266	pyrroline-5-carboxylate reductase	94.37
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.37
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	94.33
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	94.32
PRK13243	333	glyoxylate reductase; Reviewed	94.22
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.16
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	94.13
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.13
PRK06223	307	malate dehydrogenase; Reviewed	94.11
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	94.07
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	94.06
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	94.02
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.01
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	94.01
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	93.98
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	93.97
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.95
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	93.93
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.92
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	93.91
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	93.91
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	93.91
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	93.84
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.83
COG4301	321	Uncharacterized conserved protein [Function unknow	93.82
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	93.81
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	93.8
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	93.79
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.77
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	93.73
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	93.69
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	93.62
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.61
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	93.6
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	93.57
PRK05479	330	ketol-acid reductoisomerase; Provisional	93.56
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	93.55
PLN02928	347	oxidoreductase family protein	93.54
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	93.49
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	93.46
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.43
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	93.43
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.38
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	93.23
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	93.22
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	93.2
PRK08818	370	prephenate dehydrogenase; Provisional	93.19
PLN02702	364	L-idonate 5-dehydrogenase	93.17
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.14
PRK05225	487	ketol-acid reductoisomerase; Validated	93.14
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	93.1
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	93.02
COG0569	225	TrkA K+ transport systems, NAD-binding component [	93.01
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	92.95
PRK06940	275	short chain dehydrogenase; Provisional	92.93
COG4798	238	Predicted methyltransferase [General function pred	92.9
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	92.89
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	92.88
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	92.84
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	92.81
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	92.8
COG3129	292	Predicted SAM-dependent methyltransferase [General	92.8
PRK13403	335	ketol-acid reductoisomerase; Provisional	92.79
PRK05442	326	malate dehydrogenase; Provisional	92.67
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	92.66
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	92.65
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	92.65
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.63
PTZ00117	319	malate dehydrogenase; Provisional	92.62
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	92.59
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.59
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	92.58
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	92.55
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	92.51
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	92.51
PLN02712	667	arogenate dehydrogenase	92.45
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	92.41
PRK15076	431	alpha-galactosidase; Provisional	92.39
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	92.39
PTZ00357	1072	methyltransferase; Provisional	92.34
PRK07326	237	short chain dehydrogenase; Provisional	92.33
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	92.32
PRK07680	273	late competence protein ComER; Validated	92.3
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	92.27
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	92.24
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	92.2
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	92.18
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	92.17
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.15
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	92.14
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	92.12
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	92.08
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	92.06
KOG4058	199	consensus Uncharacterized conserved protein [Funct	91.97
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	91.96
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	91.94
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	91.93
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	91.9
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	91.89
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	91.88
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	91.79
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	91.73
KOG1501	636	consensus Arginine N-methyltransferase [General fu	91.73
PRK13771	334	putative alcohol dehydrogenase; Provisional	91.7
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	91.69
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	91.66
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	91.59
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	91.57
PLN02602	350	lactate dehydrogenase	91.57
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	91.57
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	91.55
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	91.55
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	91.46
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	91.43
PRK12779	944	putative bifunctional glutamate synthase subunit b	91.4
PRK12939	250	short chain dehydrogenase; Provisional	91.39
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	91.38

>PLN03075 nicotianamine synthase; Provisional

Probab=100.00  E-value=5.1e-77  Score=562.95  Aligned_cols=292  Identities=70%  Similarity=1.123  Sum_probs=276.7

Q ss_pred             CCchhhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCCCCcchhhcccccHHHHHHHHHHHHHHhhHHHHHHH
Q 021008            1 MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLESHF   80 (318)
Q Consensus         1 ~~~~~~~lv~~i~~~~~~i~~l~~l~ps~~vn~lf~~Lv~~c~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ae~~lE~~~   80 (318)
                      |++|.+++|++|+++|++|++|++|+||++||+||++||++|++++ ++|++.+++++|+||++|+++|++||+.||.||
T Consensus         4 ~~~~~~~~i~~i~~~y~~i~~l~~l~ps~~v~~lf~~Lv~~c~~~~-~~~~~~l~~~i~~~~~~l~~l~~~ae~~lE~~~   82 (296)
T PLN03075          4 MGCQEELLVEKICDLYAQISKLESLKPSKEVNTLFTQLVSTCIPPS-SIDVTKLCEEIQEMRSKLIKLCGEAEGLLEAHF   82 (296)
T ss_pred             chhhHHHHHHHHHHHHHHHhhCcccCCchhHHHHHHHHHHHhCCCC-cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999988 899999999999999999999999999999999


Q ss_pred             HHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH
Q 021008           81 SSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN  160 (318)
Q Consensus        81 A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai  160 (318)
                      |+.+++.++||++|+.||||+||++|.++|++.|......+|++|+||||||+|+|+++++++++|+++|+|+|+|++++
T Consensus        83 a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai  162 (296)
T PLN03075         83 STILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAN  162 (296)
T ss_pred             HHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHH
Confidence            99999999999999999999999999999999998776679999999999999999999998888999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccc
Q 021008          161 SKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY  240 (318)
Q Consensus       161 ~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lY  240 (318)
                      +.||++++++.|+.++|+|+++|+.+++..+++||+||++++++|++++|.++++++++.|+|||.+++|++||+|+|+|
T Consensus       163 ~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LY  242 (296)
T PLN03075        163 DVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLY  242 (296)
T ss_pred             HHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcC
Confidence            99999996558999999999999999765567999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccCCcEEEEEEcCchhHHHHHHHHhhccCCCcc-cCCCCCCcccCCcc
Q 021008          241 PVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLE-QQDQLSPKILPKKC  293 (318)
Q Consensus       241 P~v~~~~l~gf~~~~~~~p~~~VvNsvv~ark~~~~~~~-~~~~~~~~~~~~~~  293 (318)
                      |+|++++++||+++.++||+++||||||++||...+..+ .+|..+++++||||
T Consensus       243 p~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~~~~~~~~~~~~~~~~~~~~~  296 (296)
T PLN03075        243 PVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPGGPVGSGVAGIGGVVSLPCNC  296 (296)
T ss_pred             CCCChhhCCCeEEEEEECCCCCceeeEEEEEeecCCcccccccCCccccCCCCC
Confidence            999999999999999999999999999999997654432 34778999999999

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=100.00  E-value=7e-75  Score=543.65  Aligned_cols=270  Identities=60%  Similarity=0.928  Sum_probs=168.7

Q ss_pred             hhhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCCCCcchhhcccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 021008            4 QNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLESHFSSI   83 (318)
Q Consensus         4 ~~~~lv~~i~~~~~~i~~l~~l~ps~~vn~lf~~Lv~~c~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ae~~lE~~~A~~   83 (318)
                      |.+.+|++|+++|++|++|+||+|||+||+||++||++|++++ +.|++.++|+++++++.|+++|++||+.||.|||+.
T Consensus         4 ~~~~lv~~i~~ly~~i~~L~sl~ps~~vn~lF~~Lv~~c~~~~-~~dv~~L~~~i~~~~~~L~~~~~~ae~~LE~~~A~~   82 (276)
T PF03059_consen    4 EAEALVEKILSLYAQISKLESLSPSPEVNALFTQLVSLCIPPS-PIDVTKLSPEIQSIRPSLRRLCSEAEGLLESHWAKR   82 (276)
T ss_dssp             ---------------------------------------------------TGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5679999999999999999999999999999999999999998 688877889999999999999999999999999999


Q ss_pred             hhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHH
Q 021008           84 LASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKA  163 (318)
Q Consensus        84 l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~A  163 (318)
                      ++++++||++|+.||||+||++|+++|++.+.......|+||+||||||+|+|+++||++|++++.|+|||+||+|++.|
T Consensus        83 l~~~~~p~~~L~~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a  162 (276)
T PF03059_consen   83 LLASDNPLDHLESFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELA  162 (276)
T ss_dssp             HHH-SSHHHHHHTSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHH
T ss_pred             HHhCCCHHHHHhcCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence            99999999999999999999999999999998766567899999999999999999999888899999999999999999


Q ss_pred             HHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccccCC
Q 021008          164 LSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVV  243 (318)
Q Consensus       164 r~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~v  243 (318)
                      +++++++.|++++|+|+++|+.+++.++..||+||++++|||++++|.+++++++++|+||++|++|++||+|+|+||.+
T Consensus       163 ~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~v  242 (276)
T PF03059_consen  163 RRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVV  242 (276)
T ss_dssp             HHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS---
T ss_pred             HHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCC
Confidence            99999558999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCcEEEEEEcCchhHHHHHHHHhhcc
Q 021008          244 DPSDLLGFEVLSVFHPTDEVINSVVLARKYV  274 (318)
Q Consensus       244 ~~~~l~gf~~~~~~~p~~~VvNsvv~ark~~  274 (318)
                      ++++++||+++.++||+++|+||||++||..
T Consensus       243 d~~~l~gf~~~~~~hP~~~ViNSvv~~rk~~  273 (276)
T PF03059_consen  243 DPEDLRGFEVLAVVHPTDEVINSVVFARKKQ  273 (276)
T ss_dssp             -TGGGTTEEEEEEE---TT---EEEEE----
T ss_pred             ChHHCCCeEEEEEECCCCCceeEEEEEEecc
Confidence            9999999999999999999999999999974

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.76  E-value=7.6e-18  Score=135.49  Aligned_cols=107  Identities=22%  Similarity=0.330  Sum_probs=88.6

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc-cccCcCCCCccEEEe
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI-MNVSSALKDYEVVFL  199 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa-~~l~~~l~~fD~V~~  199 (318)
                      |+.||||||||+ |..++.+++.+ ++++|+|||+||++++.|++.+.+ .+.+++++|+++|+ ... .....||+|+.
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~   76 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLF-PGARVVGVDISPEMLEIARERAAE-EGLSDRITFVQGDAEFDP-DFLEPFDLVIC   76 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH-TTTTTTEEEEESCCHGGT-TTSSCEEEEEE
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEECccccCc-ccCCCCCEEEE
Confidence            578999999995 67778888743 899999999999999999999976 77889999999999 332 23348999998


Q ss_pred             ccc-c-CC-ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AAL-V-GM-DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aal-v-gm-~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+ . .+ +.+++.++++.+++.|+|||++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            771 1 12 23688999999999999999999875

...

>PLN02244 tocopherol O-methyltransferase

Probab=99.69  E-value=9.4e-16  Score=148.48  Aligned_cols=163  Identities=17%  Similarity=0.257  Sum_probs=117.7

Q ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC--CCCcccccCCcChhhHHHhhHHHHHHHhhccc-----CCCCEEEEEc
Q 021008           57 SVQDIRSKLIRLCGEAEGLLESHFSSILASF--ENPIANLNIFPYYSNYIKLSQLEFNILTQHCS-----RFPTKIAFIG  129 (318)
Q Consensus        57 ~~~~l~~~l~~l~~~ae~~lE~~~A~~l~~~--~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~-----~~~~rVL~IG  129 (318)
                      ....+.+.++..+.+....+|..|.+.+..+  +..-   ....+-..-.++++.-...   ...     .++.+|||||
T Consensus        53 ~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~---~~~~~~~aq~~~~~~~l~~---~~~~~~~~~~~~~VLDiG  126 (340)
T PLN02244         53 ATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGA---SRGDHRQAQIRMIEESLAW---AGVPDDDEKRPKRIVDVG  126 (340)
T ss_pred             chhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCC---CcccHHHHHHHHHHHHHHh---cCCCcccCCCCCeEEEec
Confidence            4456778888888887778888776655332  1100   0011111112222222222   222     5678999999


Q ss_pred             cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec-cccCCChh
Q 021008          130 SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA-ALVGMDKD  208 (318)
Q Consensus       130 sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a-alvgm~~~  208 (318)
                      ||. |..++.+++++  |++|+|||+|+.+++.|+++.+. .|+.++++|+++|+.++++..++||+|+.. ++.++  .
T Consensus       127 CG~-G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~-~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~--~  200 (340)
T PLN02244        127 CGI-GGSSRYLARKY--GANVKGITLSPVQAARANALAAA-QGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHM--P  200 (340)
T ss_pred             CCC-CHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEEcCcccCCCCCCCccEEEECCchhcc--C
Confidence            996 66667888764  89999999999999999999887 788889999999999998877899999863 33333  5


Q ss_pred             HHHHHHHHHHHhccCCeEEEEEc
Q 021008          209 EKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       209 ~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++.+++++++++|||||.|++-+
T Consensus       201 d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        201 DKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             CHHHHHHHHHHHcCCCcEEEEEE
Confidence            78899999999999999998754

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.68  E-value=1.6e-16  Score=146.59  Aligned_cols=109  Identities=15%  Similarity=0.139  Sum_probs=80.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..++.++++..++++|+|+|+|+++++.|++.... .+.. +++|+++|+.++|++.++||+|+
T Consensus        45 ~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~-~~~~-~i~~v~~da~~lp~~d~sfD~v~  121 (233)
T PF01209_consen   45 LRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR-EGLQ-NIEFVQGDAEDLPFPDNSFDAVT  121 (233)
T ss_dssp             --S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH-TT---SEEEEE-BTTB--S-TT-EEEEE
T ss_pred             CCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh-hCCC-CeeEEEcCHHHhcCCCCceeEEE
Confidence            36789999999996 677778887766788999999999999999999887 6664 99999999999999888999999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++..+. +.+++.+.+++++|+|||||++++-+
T Consensus       122 ~~fglr-n~~d~~~~l~E~~RVLkPGG~l~ile  153 (233)
T PF01209_consen  122 CSFGLR-NFPDRERALREMYRVLKPGGRLVILE  153 (233)
T ss_dssp             EES-GG-G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHhhHH-hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence            776442 34678999999999999999998766

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.67  E-value=5e-16  Score=143.65  Aligned_cols=107  Identities=15%  Similarity=0.166  Sum_probs=95.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .+|.+|||||||+ |--++.+++.. +.++|+|+|+|+.|++.|++.... .|... ++|++|||.+||+++++||+|.+
T Consensus        50 ~~g~~vLDva~GT-Gd~a~~~~k~~-g~g~v~~~D~s~~ML~~a~~k~~~-~~~~~-i~fv~~dAe~LPf~D~sFD~vt~  125 (238)
T COG2226          50 KPGDKVLDVACGT-GDMALLLAKSV-GTGEVVGLDISESMLEVAREKLKK-KGVQN-VEFVVGDAENLPFPDNSFDAVTI  125 (238)
T ss_pred             CCCCEEEEecCCc-cHHHHHHHHhc-CCceEEEEECCHHHHHHHHHHhhc-cCccc-eEEEEechhhCCCCCCccCEEEe
Confidence            4799999999995 78888899875 488999999999999999999998 77766 99999999999999999999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +..+. +..++.++|++++|+|||||++++-+
T Consensus       126 ~fglr-nv~d~~~aL~E~~RVlKpgG~~~vle  156 (238)
T COG2226         126 SFGLR-NVTDIDKALKEMYRVLKPGGRLLVLE  156 (238)
T ss_pred             eehhh-cCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence            76442 34689999999999999999998877

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.64  E-value=4.6e-16  Score=141.09  Aligned_cols=107  Identities=19%  Similarity=0.279  Sum_probs=95.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc----C--CCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS----A--LKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~----~--l~~  193 (318)
                      ..|++||+||+| .|+|+++||+...++++|+++|+|++..+.|++++++ .|++++|+++.||+.+...    .  .+.
T Consensus        44 ~~~k~vLEIGt~-~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~-ag~~~~I~~~~gda~~~l~~l~~~~~~~~  121 (205)
T PF01596_consen   44 TRPKRVLEIGTF-TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRK-AGLDDRIEVIEGDALEVLPELANDGEEGQ  121 (205)
T ss_dssp             HT-SEEEEESTT-TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHH-TTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred             cCCceEEEeccc-cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHh-cCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence            689999999998 7999999998765589999999999999999999999 9999999999999987322    1  247


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ||+||+++    ++..+..+++.+.+.|+|||++++++.
T Consensus       122 fD~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  122 FDFVFIDA----DKRNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             EEEEEEES----TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             eeEEEEcc----cccchhhHHHHHhhhccCCeEEEEccc
Confidence            99999999    789999999999999999999999994

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.64  E-value=1.1e-15  Score=139.55  Aligned_cols=107  Identities=18%  Similarity=0.293  Sum_probs=97.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE-ccccccCcC--CCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT-TDIMNVSSA--LKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~-gDa~~l~~~--l~~fD~  196 (318)
                      .++++||+||++ +|+|+++||.....++++|++|+||+..+.|++++++ .|+.++|+.+. +|+.+....  .++||+
T Consensus        58 ~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-ag~~~~i~~~~~gdal~~l~~~~~~~fDl  135 (219)
T COG4122          58 SGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAE-AGVDDRIELLLGGDALDVLSRLLDGSFDL  135 (219)
T ss_pred             cCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-cCCcceEEEEecCcHHHHHHhccCCCccE
Confidence            789999999998 8999999998753388999999999999999999999 99999999999 599886543  358999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ||+++    ++..+.++++.+.+.|+|||++++++.
T Consensus       136 iFIDa----dK~~yp~~le~~~~lLr~GGliv~DNv  167 (219)
T COG4122         136 VFIDA----DKADYPEYLERALPLLRPGGLIVADNV  167 (219)
T ss_pred             EEEeC----ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence            99999    899999999999999999999999983

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.63  E-value=3e-15  Score=115.49  Aligned_cols=95  Identities=17%  Similarity=0.240  Sum_probs=78.9

Q ss_pred             EEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCC
Q 021008          126 AFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGM  205 (318)
Q Consensus       126 L~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm  205 (318)
                      |||||| .|.++..++++  ++.+|+++|+++++++.+++....     .+++++.+|+.++++..++||+|+......+
T Consensus         1 LdiG~G-~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~-----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~   72 (95)
T PF08241_consen    1 LDIGCG-TGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN-----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH   72 (95)
T ss_dssp             EEET-T-TSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT-----STEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred             CEecCc-CCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc-----cCchheeehHHhCccccccccccccccceee
Confidence            799999 57888888874  799999999999999999998876     5566999999999998889999997654432


Q ss_pred             ChhHHHHHHHHHHHhccCCeEEEE
Q 021008          206 DKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       206 ~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      - +++.++++++.|+|||||++++
T Consensus        73 ~-~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   73 L-EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             S-SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             c-cCHHHHHHHHHHHcCcCeEEeC
Confidence            2 7999999999999999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.63  E-value=4.3e-15  Score=127.01  Aligned_cols=110  Identities=17%  Similarity=0.266  Sum_probs=91.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~  198 (318)
                      ..+.+|||+|||. |..++.++++..++++|+|||+|+++++.|++.++. .++. +++|+++|+.+++..+ ..||+|+
T Consensus         2 ~~~~~iLDlGcG~-G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~-~~~~-ni~~~~~d~~~l~~~~~~~~D~I~   78 (152)
T PF13847_consen    2 KSNKKILDLGCGT-GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE-LGLD-NIEFIQGDIEDLPQELEEKFDIII   78 (152)
T ss_dssp             TTTSEEEEET-TT-SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH-TTST-TEEEEESBTTCGCGCSSTTEEEEE
T ss_pred             CCCCEEEEecCcC-cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc-cccc-ccceEEeehhccccccCCCeeEEE
Confidence            4678999999995 677788886556899999999999999999999998 7886 9999999999976222 5899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ...... ...+...+++.+.+.|+|||.+++.+..
T Consensus        79 ~~~~l~-~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   79 SNGVLH-HFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EESTGG-GTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCchh-hccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            875432 3467789999999999999999998855

...

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.62  E-value=9e-15  Score=135.36  Aligned_cols=129  Identities=17%  Similarity=0.200  Sum_probs=102.3

Q ss_pred             cCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhC-CCCcEEEEEeCChHHHHHHHHHhhcCCCC
Q 021008           95 NIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINH-LTTTCFDNYDIDPSANSKALSLVSSDPDL  173 (318)
Q Consensus        95 ~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~-~~ga~V~gvDid~~ai~~Ar~~~~~~~gl  173 (318)
                      ..-|.|++...++..-....    ..++.+|||||||+ |..++.+++.. .|+++|+|+|+|+++++.|++.+.. .+.
T Consensus        34 ~~~p~y~~~~~~~~~~~~~~----~~~~~~vLDlGcGt-G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~  107 (247)
T PRK15451         34 RSVPGYSNIISMIGMLAERF----VQPGTQVYDLGCSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKA  107 (247)
T ss_pred             hcCCChHHHHHHHHHHHHHh----CCCCCEEEEEcccC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCC
Confidence            34688888877765543332    35778999999996 66666677632 4799999999999999999999987 777


Q ss_pred             CCCeEEEEccccccCcCCCCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          174 STRMFFHTTDIMNVSSALKDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       174 ~~ri~f~~gDa~~l~~~l~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+++++++|+.+++.  ..||+|+... +..++..++.++++++++.|||||.+++.+
T Consensus       108 ~~~v~~~~~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        108 PTPVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             CCCeEEEeCChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            7899999999998764  3699877542 334456778999999999999999998876

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.62  E-value=2.7e-15  Score=138.31  Aligned_cols=107  Identities=16%  Similarity=0.253  Sum_probs=95.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC------CCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA------LKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~------l~~  193 (318)
                      .++++||+|||| .|++++++|+...++++|+++|+|+++++.|++++++ .|++++++++.||+.+....      .++
T Consensus        67 ~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~-~gl~~~i~~~~gda~~~L~~l~~~~~~~~  144 (234)
T PLN02781         67 MNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKK-AGVDHKINFIQSDALSALDQLLNNDPKPE  144 (234)
T ss_pred             hCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence            679999999999 6999999998655578999999999999999999999 99999999999999874221      248


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ||+||+++    ++..+..+++.+.+.|+|||++++.+.
T Consensus       145 fD~VfiDa----~k~~y~~~~~~~~~ll~~GG~ii~dn~  179 (234)
T PLN02781        145 FDFAFVDA----DKPNYVHFHEQLLKLVKVGGIIAFDNT  179 (234)
T ss_pred             CCEEEECC----CHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence            99999998    678889999999999999999999873

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.60  E-value=2e-14  Score=134.53  Aligned_cols=142  Identities=14%  Similarity=0.196  Sum_probs=105.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||. |..+..+|+.  .+++|+|+|+++.+++.|++....    ..+++|+++|+.+.+...++||+|+
T Consensus        50 l~~~~~VLDiGcG~-G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~~~~~FD~V~  122 (263)
T PTZ00098         50 LNENSKVLDIGSGL-GGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDFPENTFDMIY  122 (263)
T ss_pred             CCCCCEEEEEcCCC-ChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCCCCCCeEEEE
Confidence            46789999999996 5566778865  388999999999999999987653    3689999999998877667899999


Q ss_pred             e-ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC-C----Ccc--------cccccCCCccc----cC--CcEEEEEEc
Q 021008          199 L-AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA-H----GAR--------AFLYPVVDPSD----LL--GFEVLSVFH  258 (318)
Q Consensus       199 ~-aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~-~----g~r--------~~lYP~v~~~~----l~--gf~~~~~~~  258 (318)
                      . .++.+++..++.++++++++.|||||.+++.+. .    ...        ...|+..++++    ++  ||+...+.+
T Consensus       123 s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d  202 (263)
T PTZ00098        123 SRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKD  202 (263)
T ss_pred             EhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEe
Confidence            7 445566666899999999999999999998652 0    110        11233334332    22  999887776


Q ss_pred             CchhHHHHH
Q 021008          259 PTDEVINSV  267 (318)
Q Consensus       259 p~~~VvNsv  267 (318)
                      -++.....+
T Consensus       203 ~~~~~~~~~  211 (263)
T PTZ00098        203 ISDYWLELL  211 (263)
T ss_pred             CcHHHHHHH
Confidence            666554433

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.60  E-value=2.7e-14  Score=133.50  Aligned_cols=110  Identities=7%  Similarity=0.089  Sum_probs=88.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc-CCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS-DPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~-~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++.+|||||||+ |..+..+++.+.+.++|+|+|+|+++++.|++.... ..+...+++|+++|+.++|...++||+|+
T Consensus        72 ~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         72 KMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            5788999999996 566677887654568999999999999999876541 02234689999999999988777999998


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +...++ ...++.+++++++|+|||||.+++-+
T Consensus       151 ~~~~l~-~~~d~~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        151 MGYGLR-NVVDRLKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             Eecccc-cCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            654332 23578999999999999999998876

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.59  E-value=6.1e-15  Score=137.28  Aligned_cols=107  Identities=15%  Similarity=0.207  Sum_probs=97.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-------C
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-------K  192 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-------~  192 (318)
                      ..+++||+||++ .|+|++++|+...++++|+++|+|++..+.|++++++ .|+.++|+++.||+.+....+       +
T Consensus        78 ~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~-ag~~~~I~~~~G~a~e~L~~l~~~~~~~~  155 (247)
T PLN02589         78 INAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQK-AGVAHKIDFREGPALPVLDQMIEDGKYHG  155 (247)
T ss_pred             hCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH-CCCCCceEEEeccHHHHHHHHHhccccCC
Confidence            688999999998 7999999998765689999999999999999999999 999999999999998743221       4


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +||+||+++    ++..+..+++.+.+.|+|||++++++.
T Consensus       156 ~fD~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~DNv  191 (247)
T PLN02589        156 TFDFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_pred             cccEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence            899999999    789999999999999999999999883

>PLN02476 O-methyltransferase

Probab=99.59  E-value=8.8e-15  Score=138.22  Aligned_cols=107  Identities=13%  Similarity=0.148  Sum_probs=96.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC------CCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA------LKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~------l~~  193 (318)
                      .++++||+||+| .|++++++|+...++.+|+++|+|++..+.|++++++ .|+.++|+++.||+.+....      .+.
T Consensus       117 ~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~-aGl~~~I~li~GdA~e~L~~l~~~~~~~~  194 (278)
T PLN02476        117 LGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYEL-AGVSHKVNVKHGLAAESLKSMIQNGEGSS  194 (278)
T ss_pred             cCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence            689999999999 7999999998654578999999999999999999999 99999999999999874322      247


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ||+||+++    ++..+..+++.+.+.|+|||++++++.
T Consensus       195 FD~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DNv  229 (278)
T PLN02476        195 YDFAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDNV  229 (278)
T ss_pred             CCEEEECC----CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence            99999999    788999999999999999999999883

>TIGR00740 methyltransferase, putative

Probab=99.58  E-value=5.9e-14  Score=128.76  Aligned_cols=127  Identities=15%  Similarity=0.183  Sum_probs=98.1

Q ss_pred             CcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhC-CCCcEEEEEeCChHHHHHHHHHhhcCCCCCC
Q 021008           97 FPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINH-LTTTCFDNYDIDPSANSKALSLVSSDPDLST  175 (318)
Q Consensus        97 fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~-~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~  175 (318)
                      -|+|++...++..    +......++.+|||||||+ |..++.++++. .|+++|+|+|+|+++++.|++.+.. .+...
T Consensus        33 ~p~y~~~~~~~~~----l~~~~~~~~~~iLDlGcG~-G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~-~~~~~  106 (239)
T TIGR00740        33 VPGYSNIITAIGM----LAERFVTPDSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEI  106 (239)
T ss_pred             CCCHHHHHHHHHH----HHHHhCCCCCEEEEecCCC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCC
Confidence            4677766665432    1111235778999999996 56666777653 3799999999999999999999887 66677


Q ss_pred             CeEEEEccccccCcCCCCccEEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          176 RMFFHTTDIMNVSSALKDYEVVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       176 ri~f~~gDa~~l~~~l~~fD~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +++|+++|+.+++.  ..+|+|+....+ .++.+++.++++++++.|+|||.+++.+
T Consensus       107 ~v~~~~~d~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       107 PVEILCNDIRHVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             CeEEEECChhhCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence            89999999998764  368987754333 4456788999999999999999999986

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.56  E-value=2.4e-14  Score=132.79  Aligned_cols=106  Identities=18%  Similarity=0.197  Sum_probs=87.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-cCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-SALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-~~l~~fD~V~  198 (318)
                      ..+.+|||||||+ |..++.+|+   .|.+|+++|+|+++++.|++.... .|+..+++|+++|+.+++ ...+.||+|+
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~---~g~~v~~vD~s~~~l~~a~~~~~~-~g~~~~v~~~~~d~~~l~~~~~~~fD~V~  117 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAE---LGHQVILCDLSAEMIQRAKQAAEA-KGVSDNMQFIHCAAQDIAQHLETPVDLIL  117 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHh-cCCccceEEEEcCHHHHhhhcCCCCCEEE
Confidence            5678999999996 677778887   388999999999999999999988 788889999999998874 2335899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +...+.. ..+..++++++.+.|||||.+++-.
T Consensus       118 ~~~vl~~-~~~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        118 FHAVLEW-VADPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             ehhHHHh-hCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            7664421 2456789999999999999997643

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.56  E-value=7.2e-14  Score=127.32  Aligned_cols=137  Identities=14%  Similarity=0.096  Sum_probs=100.8

Q ss_pred             HHHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH
Q 021008           80 FSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA  159 (318)
Q Consensus        80 ~A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a  159 (318)
                      |.++-.+.+.||+.-...|.+..|....          ...++.|||++||| .|..+++||+   .|..|||||+|+.|
T Consensus         3 Wd~ry~~~~~~w~~~~p~~~l~~~~~~l----------~~~~~~rvLd~GCG-~G~da~~LA~---~G~~V~gvD~S~~A   68 (213)
T TIGR03840         3 WHERWQEGQIGFHQSEVNPLLVKHWPAL----------GLPAGARVFVPLCG-KSLDLAWLAE---QGHRVLGVELSEIA   68 (213)
T ss_pred             HHHHHhcCCCCCccCCCCHHHHHHHHhh----------CCCCCCeEEEeCCC-chhHHHHHHh---CCCeEEEEeCCHHH
Confidence            4444455677887767788666554311          11466799999999 6899999997   49999999999999


Q ss_pred             HHHHHHHhhcC----------CCCCCCeEEEEccccccCcC-CCCccEEEec-cccCCChhHHHHHHHHHHHhccCCeEE
Q 021008          160 NSKALSLVSSD----------PDLSTRMFFHTTDIMNVSSA-LKDYEVVFLA-ALVGMDKDEKIRVIDHLAKYMAPGALL  227 (318)
Q Consensus       160 i~~Ar~~~~~~----------~gl~~ri~f~~gDa~~l~~~-l~~fD~V~~a-alvgm~~~~k~~vl~~l~r~LkpGg~l  227 (318)
                      ++.+.+.....          ..-+.+++|+++|+.+++.. .+.||.||-. .+++++.+.+.++++.+.+.|||||++
T Consensus        69 i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~  148 (213)
T TIGR03840        69 VEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQ  148 (213)
T ss_pred             HHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeE
Confidence            99864322110          00135799999999998654 3479999853 345678899999999999999999975


Q ss_pred             EEE
Q 021008          228 MLR  230 (318)
Q Consensus       228 v~r  230 (318)
                      ++-
T Consensus       149 ll~  151 (213)
T TIGR03840       149 LLI  151 (213)
T ss_pred             EEE
Confidence            443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.55  E-value=6.2e-14  Score=127.29  Aligned_cols=108  Identities=14%  Similarity=0.099  Sum_probs=89.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|||||||+ |..+..+++...++++|+|+|+++++++.|++..+. .++ ++++++.+|+.+++...++||+|++
T Consensus        44 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~-~~v~~~~~d~~~~~~~~~~fD~V~~  120 (231)
T TIGR02752        44 QAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD-AGL-HNVELVHGNAMELPFDDNSFDYVTI  120 (231)
T ss_pred             CCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh-cCC-CceEEEEechhcCCCCCCCccEEEE
Confidence            5778999999996 666677887655788999999999999999998876 666 6899999999988766668999987


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...++ ..++..++++++.+.|+|||.+++.+
T Consensus       121 ~~~l~-~~~~~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       121 GFGLR-NVPDYMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             ecccc-cCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence            65433 23567789999999999999998765

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.54  E-value=8.9e-14  Score=124.48  Aligned_cols=103  Identities=17%  Similarity=0.299  Sum_probs=82.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+||||||| .|..++.+|+   .|.+|+|+|+|+.+++.+++.++. .++  ++++..+|..+.+.+ +.||+|+.
T Consensus        29 ~~~~~vLDiGcG-~G~~a~~la~---~g~~V~~iD~s~~~l~~a~~~~~~-~~~--~v~~~~~d~~~~~~~-~~fD~I~~  100 (195)
T TIGR00477        29 VAPCKTLDLGCG-QGRNSLYLSL---AGYDVRAWDHNPASIASVLDMKAR-ENL--PLRTDAYDINAAALN-EDYDFIFS  100 (195)
T ss_pred             CCCCcEEEeCCC-CCHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHH-hCC--CceeEeccchhcccc-CCCCEEEE
Confidence            467899999999 5788888987   388999999999999999998876 565  378888887655432 47999986


Q ss_pred             ccc-cCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AAL-VGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aal-vgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      ... ..++.++..++++++++.|+|||.+++-
T Consensus       101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             ecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            542 2445678889999999999999985443

Part of a tellurite-reducing operon tehA and tehB

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.53  E-value=7.8e-14  Score=124.76  Aligned_cols=103  Identities=14%  Similarity=0.102  Sum_probs=88.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      +++.+|||||||+ |..++.+|+. .++++|+++|+|+++++.|++.++. .++.+ ++|+.+|+.+++. .++||+|+.
T Consensus        44 ~~g~~VLDiGcGt-G~~al~la~~-~~~~~V~giD~s~~~l~~A~~~~~~-~~l~~-i~~~~~d~~~~~~-~~~fDlV~~  118 (187)
T PRK00107         44 PGGERVLDVGSGA-GFPGIPLAIA-RPELKVTLVDSLGKKIAFLREVAAE-LGLKN-VTVVHGRAEEFGQ-EEKFDVVTS  118 (187)
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHH-cCCCC-EEEEeccHhhCCC-CCCccEEEE
Confidence            4589999999995 7777888875 3899999999999999999999998 78754 9999999999765 558999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .+.     .+...+++++++.|||||.+++-..
T Consensus       119 ~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~  146 (187)
T PRK00107        119 RAV-----ASLSDLVELCLPLLKPGGRFLALKG  146 (187)
T ss_pred             ccc-----cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            763     3567899999999999999988754

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.53  E-value=1.5e-13  Score=129.66  Aligned_cols=106  Identities=12%  Similarity=0.202  Sum_probs=84.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.|||||||| -|..++.+|++|  |++|+||.+|++..+.|++.+++ .|+.+++++..+|..+++.   .||.|+
T Consensus        60 l~~G~~vLDiGcG-wG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~-~gl~~~v~v~~~D~~~~~~---~fD~Iv  132 (273)
T PF02353_consen   60 LKPGDRVLDIGCG-WGGLAIYAAERY--GCHVTGITLSEEQAEYARERIRE-AGLEDRVEVRLQDYRDLPG---KFDRIV  132 (273)
T ss_dssp             --TT-EEEEES-T-TSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHC-STSSSTEEEEES-GGG------S-SEEE
T ss_pred             CCCCCEEEEeCCC-ccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEEeeccccCC---CCCEEE
Confidence            4899999999999 677778999986  99999999999999999999999 9999999999999988764   899766


Q ss_pred             -eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 -LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 -~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       +..+-++..+.+.++++.+.+.|||||++++..
T Consensus       133 Si~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  133 SIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             EESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             EEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence             555556666788999999999999999998754

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.52  E-value=1.2e-13  Score=128.98  Aligned_cols=108  Identities=18%  Similarity=0.225  Sum_probs=90.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++||+||||+ |..++.+++.+.++.+|+++|+++++++.|+++... .|+ .+++|+.+|+.+++...+.||+|+.
T Consensus        76 ~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~-~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~  152 (272)
T PRK11873         76 KPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK-AGY-TNVEFRLGEIEALPVADNSVDVIIS  152 (272)
T ss_pred             CCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH-cCC-CCEEEEEcchhhCCCCCCceeEEEE
Confidence            6789999999997 777777777655667899999999999999999887 676 5899999999998766668999996


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....++ ..++.++++++.+.|||||+|++.+
T Consensus       153 ~~v~~~-~~d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        153 NCVINL-SPDKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             cCcccC-CCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            654332 3577889999999999999999865

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.50  E-value=6e-14  Score=111.94  Aligned_cols=97  Identities=19%  Similarity=0.235  Sum_probs=77.5

Q ss_pred             EEEEccCCChHHHHHHHHhC--CCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec-c
Q 021008          125 IAFIGSGPLPLTSIVLAINH--LTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA-A  201 (318)
Q Consensus       125 VL~IGsGplp~tai~LA~~~--~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a-a  201 (318)
                      |||+|||+ |..+..+++.+  .+..+++|+|+|+++++.|++.... .+.  +++|+++|+.+++...++||+|+.. .
T Consensus         1 ILDlgcG~-G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGT-GRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-DGP--KVRFVQADARDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TT-SHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-TTT--TSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCC-cHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-cCC--ceEEEECCHhHCcccCCCeeEEEEcCC
Confidence            79999996 55556677654  1348999999999999999999987 454  8999999999998777799999983 3


Q ss_pred             -ccCCChhHHHHHHHHHHHhccCCe
Q 021008          202 -LVGMDKDEKIRVIDHLAKYMAPGA  225 (318)
Q Consensus       202 -lvgm~~~~k~~vl~~l~r~LkpGg  225 (318)
                       +..++.++..++++++++++||||
T Consensus        77 ~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence             446678899999999999999998

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.50  E-value=1.1e-13  Score=133.58  Aligned_cols=107  Identities=14%  Similarity=0.098  Sum_probs=88.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+|+   .|++|+|||+++++++.|++.+.. .+...+++|+++|+.+++...+.||+|+.
T Consensus       130 ~~g~~ILDIGCG~-G~~s~~La~---~g~~V~GID~s~~~i~~Ar~~~~~-~~~~~~i~~~~~dae~l~~~~~~FD~Vi~  204 (322)
T PLN02396        130 FEGLKFIDIGCGG-GLLSEPLAR---MGATVTGVDAVDKNVKIARLHADM-DPVTSTIEYLCTTAEKLADEGRKFDAVLS  204 (322)
T ss_pred             CCCCEEEEeeCCC-CHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHh-cCcccceeEEecCHHHhhhccCCCCEEEE
Confidence            3567999999995 666678886   589999999999999999988765 45567899999999998766668999996


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ...+. ...+..++++++++.|||||.+++...
T Consensus       205 ~~vLe-Hv~d~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        205 LEVIE-HVANPAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             hhHHH-hcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence            55332 234678899999999999999998763

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.50  E-value=3.5e-13  Score=123.19  Aligned_cols=135  Identities=14%  Similarity=0.139  Sum_probs=98.9

Q ss_pred             HHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH
Q 021008           81 SSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN  160 (318)
Q Consensus        81 A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai  160 (318)
                      -++-.+.+.||.--+.+|++..|....          ...++.|||++||| .|..+++||+   .|..|+|||+|+.|+
T Consensus         7 d~rw~~~~~~~~~~~p~~~L~~~~~~~----------~~~~~~rvL~~gCG-~G~da~~LA~---~G~~V~avD~s~~Ai   72 (218)
T PRK13255          7 HEKWAENQIGFHQEEVNPLLQKYWPAL----------ALPAGSRVLVPLCG-KSLDMLWLAE---QGHEVLGVELSELAV   72 (218)
T ss_pred             HHHHcCCCCCCCCCCCCHHHHHHHHhh----------CCCCCCeEEEeCCC-ChHhHHHHHh---CCCeEEEEccCHHHH
Confidence            333344456776668888777665421          12456799999999 6899999997   499999999999999


Q ss_pred             HHHHHHhhc-----CCC-----CCCCeEEEEccccccCcCC-CCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          161 SKALSLVSS-----DPD-----LSTRMFFHTTDIMNVSSAL-KDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       161 ~~Ar~~~~~-----~~g-----l~~ri~f~~gDa~~l~~~l-~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      +.+.+-...     ..|     .+.+|++.++|+.+++... ..||.||-.+ ++.++.+.+.++++.+.+.|+|||+++
T Consensus        73 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~  152 (218)
T PRK13255         73 EQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL  152 (218)
T ss_pred             HHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence            987431110     000     2478999999999986543 4899999433 345578999999999999999998643


Q ss_pred             E
Q 021008          229 L  229 (318)
Q Consensus       229 ~  229 (318)
                      +
T Consensus       153 l  153 (218)
T PRK13255        153 L  153 (218)
T ss_pred             E
Confidence            3

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.49  E-value=6.9e-13  Score=107.67  Aligned_cols=103  Identities=15%  Similarity=0.139  Sum_probs=83.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc-CcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV-SSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l-~~~l~~fD~V~  198 (318)
                      .++.+|+|+|||+ |..++.++++. ++++|+++|+++.+++.|++.++. .++ .+++++.+|+.+. +.....||+|+
T Consensus        18 ~~~~~vldlG~G~-G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~D~v~   93 (124)
T TIGR02469        18 RPGDVLWDIGAGS-GSITIEAARLV-PNGRVYAIERNPEALRLIERNARR-FGV-SNIVIVEGDAPEALEDSLPEPDRVF   93 (124)
T ss_pred             CCCCEEEEeCCCC-CHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHH-hCC-CceEEEeccccccChhhcCCCCEEE
Confidence            5678999999997 56667778754 779999999999999999999887 666 4799999998763 22334899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +..-    .....++++++++.|+|||.+++.
T Consensus        94 ~~~~----~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        94 IGGS----GGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             ECCc----chhHHHHHHHHHHHcCCCCEEEEE
Confidence            7652    245568999999999999999875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.48  E-value=3.7e-13  Score=120.64  Aligned_cols=103  Identities=16%  Similarity=0.275  Sum_probs=85.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||+|||. |..++.||+   .|++|+|+|+|+++++.|++..+. .++ .+++++++|+.+++.. +.||+|+.
T Consensus        29 ~~~~~vLDiGcG~-G~~a~~La~---~g~~V~gvD~S~~~i~~a~~~~~~-~~~-~~v~~~~~d~~~~~~~-~~fD~I~~  101 (197)
T PRK11207         29 VKPGKTLDLGCGN-GRNSLYLAA---NGFDVTAWDKNPMSIANLERIKAA-ENL-DNLHTAVVDLNNLTFD-GEYDFILS  101 (197)
T ss_pred             CCCCcEEEECCCC-CHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHH-cCC-CcceEEecChhhCCcC-CCcCEEEE
Confidence            5678999999995 777788997   388999999999999999999887 666 4699999999876543 47999986


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      .... .++.++..++++++++.|+|||.+++
T Consensus       102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             ecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            5433 34667889999999999999998544

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.48  E-value=6.1e-13  Score=125.80  Aligned_cols=102  Identities=17%  Similarity=0.254  Sum_probs=83.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+||||||| .|..++.+|+   .|.+|+|+|+|+.+++.+++.++. .++  ++++..+|+.+... .++||+|+.
T Consensus       119 ~~~~~vLDlGcG-~G~~~~~la~---~g~~V~avD~s~~ai~~~~~~~~~-~~l--~v~~~~~D~~~~~~-~~~fD~I~~  190 (287)
T PRK12335        119 VKPGKALDLGCG-QGRNSLYLAL---LGFDVTAVDINQQSLENLQEIAEK-ENL--NIRTGLYDINSASI-QEEYDFILS  190 (287)
T ss_pred             cCCCCEEEeCCC-CCHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHH-cCC--ceEEEEechhcccc-cCCccEEEE
Confidence            456799999999 4788888987   489999999999999999999887 566  78999999876533 348999986


Q ss_pred             ccc-cCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AAL-VGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aal-vgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ... ..++.++..++++++.+.|+|||.+++
T Consensus       191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            543 244667889999999999999998655

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.47  E-value=1.1e-12  Score=116.50  Aligned_cols=102  Identities=14%  Similarity=0.119  Sum_probs=85.0

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      ++++|||||||+ |..++.+|+. .++++|++||+|+++++.+++.+++ .|+. +++++++|+.+++ ..++||+|+..
T Consensus        42 ~~~~vLDiGcGt-G~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~-~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~  116 (181)
T TIGR00138        42 DGKKVIDIGSGA-GFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAE-LGLN-NVEIVNGRAEDFQ-HEEQFDVITSR  116 (181)
T ss_pred             CCCeEEEecCCC-CccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHH-hCCC-CeEEEecchhhcc-ccCCccEEEeh
Confidence            588999999995 6777888864 4788999999999999999999888 7774 6999999999874 34589999977


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++     .+...+++.+.+.|+|||++++..+
T Consensus       117 ~~-----~~~~~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138       117 AL-----ASLNVLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             hh-----hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence            63     2455688889999999999998753

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.46  E-value=7.7e-13  Score=122.60  Aligned_cols=100  Identities=18%  Similarity=0.221  Sum_probs=81.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..+..+++++ |+++|+|+|+|+.+++.|++         .+++|+++|+.+++ ..++||+|+
T Consensus        27 ~~~~~~vLDlGcG~-G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~---------~~~~~~~~d~~~~~-~~~~fD~v~   94 (255)
T PRK14103         27 AERARRVVDLGCGP-GNLTRYLARRW-PGAVIEALDSSPEMVAAARE---------RGVDARTGDVRDWK-PKPDTDVVV   94 (255)
T ss_pred             CCCCCEEEEEcCCC-CHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh---------cCCcEEEcChhhCC-CCCCceEEE
Confidence            36789999999997 55567788764 89999999999999999964         24789999998875 446899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....+++ ..++.++++++++.|||||.+++..
T Consensus        95 ~~~~l~~-~~d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         95 SNAALQW-VPEHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             Eehhhhh-CCCHHHHHHHHHHhCCCCcEEEEEc
Confidence            8765533 2467889999999999999998853

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.45  E-value=1.2e-12  Score=118.05  Aligned_cols=106  Identities=14%  Similarity=0.088  Sum_probs=84.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |+.+..+|+...++.+|+++|+++++++.|++.+.+ .|+..+++++.+|+.+.....+.||+|++
T Consensus        71 ~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~-~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~  148 (205)
T PRK13944         71 RPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER-LGYWGVVEVYHGDGKRGLEKHAPFDAIIV  148 (205)
T ss_pred             CCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEECCcccCCccCCCccEEEE
Confidence            5778999999996 666677887543467999999999999999999988 78878899999999875444568999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      .+...       .+.+++.+.|+|||+|++-...+
T Consensus       149 ~~~~~-------~~~~~l~~~L~~gG~lvi~~~~~  176 (205)
T PRK13944        149 TAAAS-------TIPSALVRQLKDGGVLVIPVEEG  176 (205)
T ss_pred             ccCcc-------hhhHHHHHhcCcCcEEEEEEcCC
Confidence            76331       23346789999999998855433

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.45  E-value=1.4e-12  Score=120.06  Aligned_cols=138  Identities=8%  Similarity=0.047  Sum_probs=105.1

Q ss_pred             HHHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH
Q 021008           80 FSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA  159 (318)
Q Consensus        80 ~A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a  159 (318)
                      |-++-.+.+.+|+.-...|++..|...       +   ...++.|||..||| -|..+++||+   -|..|+|||+|+.|
T Consensus        12 W~~rw~~~~~~f~~~~pnp~L~~~~~~-------l---~~~~~~rvLvPgCG-kg~D~~~LA~---~G~~V~GvDlS~~A   77 (226)
T PRK13256         12 WLDRWQNDDVGFCQESPNEFLVKHFSK-------L---NINDSSVCLIPMCG-CSIDMLFFLS---KGVKVIGIELSEKA   77 (226)
T ss_pred             HHHHHhcCCCCCccCCCCHHHHHHHHh-------c---CCCCCCeEEEeCCC-ChHHHHHHHh---CCCcEEEEecCHHH
Confidence            444445567788888889977655322       1   12456899999999 6999999998   49999999999999


Q ss_pred             HHHHHHHhhcC----------CCCCCCeEEEEccccccCc---CCCCccEEEe-ccccCCChhHHHHHHHHHHHhccCCe
Q 021008          160 NSKALSLVSSD----------PDLSTRMFFHTTDIMNVSS---ALKDYEVVFL-AALVGMDKDEKIRVIDHLAKYMAPGA  225 (318)
Q Consensus       160 i~~Ar~~~~~~----------~gl~~ri~f~~gDa~~l~~---~l~~fD~V~~-aalvgm~~~~k~~vl~~l~r~LkpGg  225 (318)
                      ++.+.+-..-.          .--+.++++.+||..+++.   ..+.||.||- ++++.++.+.+.++.+++.+.|+|||
T Consensus        78 i~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg  157 (226)
T PRK13256         78 VLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNT  157 (226)
T ss_pred             HHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCc
Confidence            99986621100          0114689999999999863   2358999994 56778889999999999999999999


Q ss_pred             EEEEEc
Q 021008          226 LLMLRS  231 (318)
Q Consensus       226 ~lv~r~  231 (318)
                      .+++-.
T Consensus       158 ~llll~  163 (226)
T PRK13256        158 QILLLV  163 (226)
T ss_pred             EEEEEE
Confidence            876543

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.45  E-value=6.6e-13  Score=119.99  Aligned_cols=104  Identities=18%  Similarity=0.283  Sum_probs=86.2

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      ++|||||||. |..++.+|+.+ ++++|+|+|+|+++++.|++.+.. .|+..+++|+.+|..+.+.. +.||+|+....
T Consensus         1 ~~vLDiGcG~-G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~-~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~   76 (224)
T smart00828        1 KRVLDFGCGY-GSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRA-LGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV   76 (224)
T ss_pred             CeEEEECCCC-CHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh-cCCCcceEEEecccccCCCC-CCCCEeehHHH
Confidence            5899999996 55667788764 789999999999999999999988 89999999999999765433 47999986443


Q ss_pred             cCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          203 VGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+ ...++..+++++++.|+|||.+++.+
T Consensus        77 l~-~~~~~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       77 IH-HIKDKMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             HH-hCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            32 22568899999999999999998865

>PRK04457 spermidine synthase; Provisional

Probab=99.45  E-value=6.1e-13  Score=124.71  Aligned_cols=148  Identities=17%  Similarity=0.119  Sum_probs=103.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~  198 (318)
                      .+|++||+|||| .|..+..+++. .|+++|++||+||++++.|++.+.. .+...+++++++|+.+..... ++||+|+
T Consensus        65 ~~~~~vL~IG~G-~G~l~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~-~~~~~rv~v~~~Da~~~l~~~~~~yD~I~  141 (262)
T PRK04457         65 PRPQHILQIGLG-GGSLAKFIYTY-LPDTRQTAVEINPQVIAVARNHFEL-PENGERFEVIEADGAEYIAVHRHSTDVIL  141 (262)
T ss_pred             CCCCEEEEECCC-HhHHHHHHHHh-CCCCeEEEEECCHHHHHHHHHHcCC-CCCCCceEEEECCHHHHHHhCCCCCCEEE
Confidence            578999999999 57777777765 4899999999999999999999876 556689999999998743332 4899999


Q ss_pred             eccccC--CCh-hHHHHHHHHHHHhccCCeEEEEEcCCCcccccccCCCccccC-CcEEEEEEcCchhHHHHHHHHhhc
Q 021008          199 LAALVG--MDK-DEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLL-GFEVLSVFHPTDEVINSVVLARKY  273 (318)
Q Consensus       199 ~aalvg--m~~-~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~v~~~~l~-gf~~~~~~~p~~~VvNsvv~ark~  273 (318)
                      ++++-+  ++. -...++++++.+.|+|||++++.-....  -.++.+ .+.++ -|....+..|...-.|.++++.|.
T Consensus       142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~--~~~~~~-l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~  217 (262)
T PRK04457        142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD--KRYDRY-LERLESSFEGRVLELPAESHGNVAVFAFKS  217 (262)
T ss_pred             EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc--hhHHHH-HHHHHHhcCCcEEEEecCCCccEEEEEECC
Confidence            987542  111 1237899999999999999998642111  111111 12233 465322222333335778888764

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.44  E-value=2.7e-13  Score=124.78  Aligned_cols=104  Identities=16%  Similarity=0.184  Sum_probs=88.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -++.|||||||| +|.-+..||+   .|+.|+|+|++++.|+.|+..+.. .|+.  +.|.++.+.++...-++||+|..
T Consensus        58 l~g~~vLDvGCG-gG~Lse~mAr---~Ga~VtgiD~se~~I~~Ak~ha~e-~gv~--i~y~~~~~edl~~~~~~FDvV~c  130 (243)
T COG2227          58 LPGLRVLDVGCG-GGILSEPLAR---LGASVTGIDASEKPIEVAKLHALE-SGVN--IDYRQATVEDLASAGGQFDVVTC  130 (243)
T ss_pred             CCCCeEEEecCC-ccHhhHHHHH---CCCeeEEecCChHHHHHHHHhhhh-cccc--ccchhhhHHHHHhcCCCccEEEE
Confidence            478999999999 7888899998   499999999999999999999887 5553  78999999998655469999986


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .-.+. +.++...+++++++.+||||.+++..
T Consensus       131 mEVlE-Hv~dp~~~~~~c~~lvkP~G~lf~ST  161 (243)
T COG2227         131 MEVLE-HVPDPESFLRACAKLVKPGGILFLST  161 (243)
T ss_pred             hhHHH-ccCCHHHHHHHHHHHcCCCcEEEEec
Confidence            55431 23566779999999999999999877

>PRK08317 hypothetical protein; Provisional

Probab=99.44  E-value=2e-12  Score=115.96  Aligned_cols=109  Identities=14%  Similarity=0.146  Sum_probs=88.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+||+||||+ |..+..+++.+.++++|+|+|+|+.+++.|++...   +...+++|+.+|+.+.+...+.||+|+
T Consensus        17 ~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~~~~~~D~v~   92 (241)
T PRK08317         17 VQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAA---GLGPNVEFVRGDADGLPFPDGSFDAVR   92 (241)
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh---CCCCceEEEecccccCCCCCCCceEEE
Confidence            36789999999996 56667788765478899999999999999998733   245789999999988776666899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ...... ...+...+++++.+.|+|||.+++...
T Consensus        93 ~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         93 SDRVLQ-HLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             Eechhh-ccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence            765432 235678899999999999999987653

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.43  E-value=1.2e-12  Score=118.56  Aligned_cols=103  Identities=17%  Similarity=0.162  Sum_probs=82.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |+.+..+|+...++.+|+++|+++++++.|++.+++ .|+ ++++|+++|+.+.......||+|+
T Consensus        75 ~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~-~g~-~~v~~~~~d~~~~~~~~~~fD~Ii  151 (215)
T TIGR00080        75 LKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK-LGL-DNVIVIVGDGTQGWEPLAPYDRIY  151 (215)
T ss_pred             CCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-CCC-CCeEEEECCcccCCcccCCCCEEE
Confidence            46889999999996 666678887643467899999999999999999998 787 689999999987644445899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.+-.       ..+.+.+.+.|+|||++++--
T Consensus       152 ~~~~~-------~~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       152 VTAAG-------PKIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             EcCCc-------ccccHHHHHhcCcCcEEEEEE
Confidence            87632       234456789999999988754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.43  E-value=1.7e-12  Score=119.61  Aligned_cols=100  Identities=16%  Similarity=0.194  Sum_probs=80.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||++ ..+..+++   .+.+|+++|+|+++++.|++....       ..|+++|+.+++...++||+|+.
T Consensus        41 ~~~~~vLDiGcG~G-~~~~~l~~---~~~~v~~~D~s~~~l~~a~~~~~~-------~~~~~~d~~~~~~~~~~fD~V~s  109 (251)
T PRK10258         41 RKFTHVLDAGCGPG-WMSRYWRE---RGSQVTALDLSPPMLAQARQKDAA-------DHYLAGDIESLPLATATFDLAWS  109 (251)
T ss_pred             cCCCeEEEeeCCCC-HHHHHHHH---cCCeEEEEECCHHHHHHHHhhCCC-------CCEEEcCcccCcCCCCcEEEEEE
Confidence            45789999999985 44456665   489999999999999999876432       46899999998876678999996


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+.+ ..+..+++.++.+.|+|||.+++..
T Consensus       110 ~~~l~~-~~d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        110 NLAVQW-CGNLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             Cchhhh-cCCHHHHHHHHHHHcCCCeEEEEEe
Confidence            554432 2466789999999999999998865

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.43  E-value=2e-12  Score=117.38  Aligned_cols=103  Identities=14%  Similarity=0.082  Sum_probs=82.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+||+||||+ |+.+..+|+...++++|+++|+++++++.|++.++. .|+ .+++++++|+.+.....+.||+|+
T Consensus        74 ~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~-~g~-~~v~~~~gd~~~~~~~~~~fD~I~  150 (212)
T PRK13942         74 LKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK-LGY-DNVEVIVGDGTLGYEENAPYDRIY  150 (212)
T ss_pred             CCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCC-CCeEEEECCcccCCCcCCCcCEEE
Confidence            46889999999995 676677887544568999999999999999999988 676 579999999987655556899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.+.+       .++...+.+.|||||++++-.
T Consensus       151 ~~~~~-------~~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        151 VTAAG-------PDIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             ECCCc-------ccchHHHHHhhCCCcEEEEEE
Confidence            87643       123345678999999998854

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.42  E-value=2.1e-12  Score=129.70  Aligned_cols=104  Identities=15%  Similarity=0.232  Sum_probs=86.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||. |..++.+|+++  +++|+|+|+|+++++.|++...   +...+++|+++|+.+.+...+.||+|+.
T Consensus       265 ~~~~~vLDiGcG~-G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~I~s  338 (475)
T PLN02336        265 KPGQKVLDVGCGI-GGGDFYMAENF--DVHVVGIDLSVNMISFALERAI---GRKCSVEFEVADCTKKTYPDNSFDVIYS  338 (475)
T ss_pred             CCCCEEEEEeccC-CHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh---cCCCceEEEEcCcccCCCCCCCEEEEEE
Confidence            5678999999996 55667888753  8899999999999999988764   3567899999999987765568999997


Q ss_pred             cc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .. +.++  .++.++++++++.|||||.+++.+
T Consensus       339 ~~~l~h~--~d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        339 RDTILHI--QDKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             CCccccc--CCHHHHHHHHHHHcCCCeEEEEEE
Confidence            54 3343  578899999999999999999865

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.41  E-value=2.7e-12  Score=118.64  Aligned_cols=101  Identities=19%  Similarity=0.312  Sum_probs=81.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.+ ++.+|+|+|+|+.+++.|++..       .+++|+.+|+.++. ...+||+|+.
T Consensus        30 ~~~~~vLDiGcG~-G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~-~~~~fD~v~~   99 (258)
T PRK01683         30 ENPRYVVDLGCGP-GNSTELLVERW-PAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQ-PPQALDLIFA   99 (258)
T ss_pred             cCCCEEEEEcccC-CHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccC-CCCCccEEEE
Confidence            6779999999997 55556788764 8899999999999999998764       34789999998764 3348999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....++ ..++.++++++++.|||||.+++..
T Consensus       100 ~~~l~~-~~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        100 NASLQW-LPDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             ccChhh-CCCHHHHHHHHHHhcCCCcEEEEEC
Confidence            765532 2467889999999999999998864

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.40  E-value=3e-12  Score=118.68  Aligned_cols=109  Identities=9%  Similarity=0.092  Sum_probs=90.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCC------cEEEEEeCChHHHHHHHHHhhcCCCCCCC--eEEEEccccccCcC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTT------TCFDNYDIDPSANSKALSLVSSDPDLSTR--MFFHTTDIMNVSSA  190 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~g------a~V~gvDid~~ai~~Ar~~~~~~~gl~~r--i~f~~gDa~~l~~~  190 (318)
                      +..+.++|||++|+ |..++.+.+. .+.      ++|+..||+|++++.+++...+ .++.++  +.|++||+.+||++
T Consensus        98 p~~~m~~lDvaGGT-GDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~LpFd  174 (296)
T KOG1540|consen   98 PGKGMKVLDVAGGT-GDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAEDLPFD  174 (296)
T ss_pred             CCCCCeEEEecCCc-chhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCcccCCCC
Confidence            46779999999995 8888888763 344      8999999999999999999877 677554  99999999999999


Q ss_pred             CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +..||..-++.-+- +-.+..+.+++.+|+|||||++.+-+
T Consensus       175 d~s~D~yTiafGIR-N~th~~k~l~EAYRVLKpGGrf~cLe  214 (296)
T KOG1540|consen  175 DDSFDAYTIAFGIR-NVTHIQKALREAYRVLKPGGRFSCLE  214 (296)
T ss_pred             CCcceeEEEeccee-cCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            99999877665331 22577889999999999999987544

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.40  E-value=3.9e-12  Score=113.87  Aligned_cols=107  Identities=11%  Similarity=0.119  Sum_probs=86.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V  197 (318)
                      ..++.+|||+|||+ |.-++.+|+...++.+|+++|+++++++.|++.++. .|+.+++.++.+|+.+..... ..||.|
T Consensus        38 ~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~-~g~~~~v~~~~~d~~~~l~~~~~~~D~V  115 (198)
T PRK00377         38 LRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK-FGVLNNIVLIKGEAPEILFTINEKFDRI  115 (198)
T ss_pred             CCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-hCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence            46889999999997 555566776544578999999999999999999988 787789999999998743333 489999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+..    ......++++.+.+.|+|||++++..
T Consensus       116 ~~~~----~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (198)
T PRK00377        116 FIGG----GSEKLKEIISASWEIIKKGGRIVIDA  145 (198)
T ss_pred             EECC----CcccHHHHHHHHHHHcCCCcEEEEEe
Confidence            9754    12455789999999999999998754

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.39  E-value=4e-12  Score=120.89  Aligned_cols=106  Identities=14%  Similarity=0.118  Sum_probs=88.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |.-++.+++++ |+.+++++|+ |++++.|++.+++ .|+.+|++++.+|..+.+  ..++|+|++
T Consensus       148 ~~~~~vlDiG~G~-G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-~gl~~rv~~~~~d~~~~~--~~~~D~v~~  221 (306)
T TIGR02716       148 DGVKKMIDVGGGI-GDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAE-KGVADRMRGIAVDIYKES--YPEADAVLF  221 (306)
T ss_pred             CCCCEEEEeCCch-hHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHh-CCccceEEEEecCccCCC--CCCCCEEEe
Confidence            5678999999996 56667888775 8999999998 7999999999988 899999999999998643  345899887


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.+...++++++++.|+|||++++-+
T Consensus       222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            6644 4455566889999999999999998876

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.38  E-value=2.6e-12  Score=114.79  Aligned_cols=109  Identities=15%  Similarity=0.098  Sum_probs=86.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---cCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---SALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---~~l~~fD~  196 (318)
                      ....+|||||||. |..++.+|+++ |++.|+|||+++++++.|++.... .|+. +++|+++|+.+++   .+.+.||.
T Consensus        15 ~~~~~ilDiGcG~-G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~-~~l~-ni~~i~~d~~~~~~~~~~~~~~d~   90 (194)
T TIGR00091        15 NKAPLHLEIGCGK-GRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANK-LGLK-NLHVLCGDANELLDKFFPDGSLSK   90 (194)
T ss_pred             CCCceEEEeCCCc-cHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH-hCCC-CEEEEccCHHHHHHhhCCCCceeE
Confidence            4567999999996 66667888775 899999999999999999998887 7774 8999999998754   22347999


Q ss_pred             EEeccccCCChhH-------HHHHHHHHHHhccCCeEEEEEcC
Q 021008          197 VFLAALVGMDKDE-------KIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       197 V~~aalvgm~~~~-------k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |++..-.++++..       ..+++++++++|||||.|.+...
T Consensus        91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td  133 (194)
T TIGR00091        91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD  133 (194)
T ss_pred             EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence            9876433332211       15799999999999999988763

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.38  E-value=3.5e-12  Score=114.87  Aligned_cols=108  Identities=15%  Similarity=0.086  Sum_probs=84.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc-cccC--cCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI-MNVS--SALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa-~~l~--~~l~~fD~  196 (318)
                      ..+.+|||||||+ |..++.+|+. .|+.+|+|||+|+++++.|++.+.. .++ .+++|+++|+ ..++  ...+.||.
T Consensus        39 ~~~~~VLDiGcGt-G~~~~~la~~-~p~~~v~gVD~s~~~i~~a~~~~~~-~~~-~~v~~~~~d~~~~l~~~~~~~~~D~  114 (202)
T PRK00121         39 NDAPIHLEIGFGK-GEFLVEMAKA-NPDINFIGIEVHEPGVGKALKKIEE-EGL-TNLRLLCGDAVEVLLDMFPDGSLDR  114 (202)
T ss_pred             CCCCeEEEEccCC-CHHHHHHHHH-CCCccEEEEEechHHHHHHHHHHHH-cCC-CCEEEEecCHHHHHHHHcCccccce
Confidence            4678999999996 5556677765 4889999999999999999998887 666 6799999999 6654  34458999


Q ss_pred             EEeccccCCCh-------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDK-------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~-------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |++....++..       .....+++++++.|||||.+++..
T Consensus       115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence            98653222111       124679999999999999998875

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.38  E-value=2.3e-12  Score=104.42  Aligned_cols=105  Identities=17%  Similarity=0.226  Sum_probs=82.8

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccEEEe
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEVVFL  199 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~V~~  199 (318)
                      |.||||+|||. |..++.+++..  ..+++|+|+||.+++.|++.+.. .++.++++++++|..++.  ...++||+|+.
T Consensus         1 g~~vlD~~~G~-G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~   76 (117)
T PF13659_consen    1 GDRVLDPGCGS-GTFLLAALRRG--AARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVT   76 (117)
T ss_dssp             TEEEEEETSTT-CHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred             CCEEEEcCcch-HHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEE
Confidence            46999999995 67777777642  69999999999999999999998 888899999999999876  44568999996


Q ss_pred             ccccC--C-C----hhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AALVG--M-D----KDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalvg--m-~----~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      .--.+  + .    .....++++++.+.|||||.+++-
T Consensus        77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            54211  1 1    123468999999999999998764

...

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.36  E-value=2.9e-12  Score=117.29  Aligned_cols=135  Identities=15%  Similarity=0.187  Sum_probs=98.3

Q ss_pred             HHHHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH
Q 021008           79 HFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS  158 (318)
Q Consensus        79 ~~A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~  158 (318)
                      .|.++=.++..||+.-...|.+..|...       +   ...++.|||..||| -|..+++||++   |.+|+|||+|+.
T Consensus         5 ~W~~~w~~~~~~w~~~~~~p~L~~~~~~-------l---~~~~~~rvLvPgCG-~g~D~~~La~~---G~~VvGvDls~~   70 (218)
T PF05724_consen    5 FWEERWQEGQTPWDQGEPNPALVEYLDS-------L---ALKPGGRVLVPGCG-KGYDMLWLAEQ---GHDVVGVDLSPT   70 (218)
T ss_dssp             HHHHHHHTT--TT--TTSTHHHHHHHHH-------H---TTSTSEEEEETTTT-TSCHHHHHHHT---TEEEEEEES-HH
T ss_pred             HHHHHHhcCCCCCCCCCCCHHHHHHHHh-------c---CCCCCCeEEEeCCC-ChHHHHHHHHC---CCeEEEEecCHH
Confidence            3444444566789888889987777543       1   12667899999999 58999999983   999999999999


Q ss_pred             HHHHHHHH-hhc--C---CC----CCCCeEEEEccccccCcCCC-CccEEE-eccccCCChhHHHHHHHHHHHhccCCeE
Q 021008          159 ANSKALSL-VSS--D---PD----LSTRMFFHTTDIMNVSSALK-DYEVVF-LAALVGMDKDEKIRVIDHLAKYMAPGAL  226 (318)
Q Consensus       159 ai~~Ar~~-~~~--~---~g----l~~ri~f~~gDa~~l~~~l~-~fD~V~-~aalvgm~~~~k~~vl~~l~r~LkpGg~  226 (318)
                      |++.+.+- ...  .   .+    -..+|+|.+||..+++.... +||+|| -++++.++.+.+.++.+++.+.|+|||.
T Consensus        71 Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~  150 (218)
T PF05724_consen   71 AIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR  150 (218)
T ss_dssp             HHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred             HHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence            99998432 210  0   01    13579999999999876553 899999 4567777899999999999999999999


Q ss_pred             E
Q 021008          227 L  227 (318)
Q Consensus       227 l  227 (318)
                      +
T Consensus       151 ~  151 (218)
T PF05724_consen  151 G  151 (218)
T ss_dssp             E
T ss_pred             E
Confidence            4

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK06922 hypothetical protein; Provisional

Probab=99.36  E-value=1.3e-11  Score=127.80  Aligned_cols=107  Identities=10%  Similarity=0.142  Sum_probs=86.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~V  197 (318)
                      .++.+|||||||+ |..+..+|+++ |+.+|+|+|+|+.+++.|++.... .  +.+++++++|+.+++  +..++||+|
T Consensus       417 ~~g~rVLDIGCGT-G~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~-~--g~~ie~I~gDa~dLp~~fedeSFDvV  491 (677)
T PRK06922        417 IKGDTIVDVGAGG-GVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQN-E--GRSWNVIKGDAINLSSSFEKESVDTI  491 (677)
T ss_pred             cCCCEEEEeCCCC-CHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhh-c--CCCeEEEEcchHhCccccCCCCEEEE
Confidence            4688999999996 66666788764 899999999999999999987654 3  357899999999886  445689999


Q ss_pred             EeccccC-C-----------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVG-M-----------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvg-m-----------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.....+ +           +.++..+++++++++|||||.+++.+
T Consensus       492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            8654321 1           23577899999999999999999976

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.35  E-value=1.3e-11  Score=109.27  Aligned_cols=102  Identities=14%  Similarity=0.101  Sum_probs=82.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.++++ .++.+|+++|+|+++++.|+++++. .++ .+++++++|+... . .+.||+|++
T Consensus        30 ~~~~~vLDiG~G~-G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~n~~~-~~~-~~i~~~~~d~~~~-~-~~~~D~v~~  103 (187)
T PRK08287         30 HRAKHLIDVGAGT-GSVSIEAALQ-FPSLQVTAIERNPDALRLIKENRQR-FGC-GNIDIIPGEAPIE-L-PGKADAIFI  103 (187)
T ss_pred             CCCCEEEEECCcC-CHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHH-hCC-CCeEEEecCchhh-c-CcCCCEEEE
Confidence            5788999999996 6767778876 4789999999999999999999887 666 4799999998532 1 247999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....    ....++++.+.+.|+|||.+++..
T Consensus       104 ~~~~----~~~~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287        104 GGSG----GNLTAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             CCCc----cCHHHHHHHHHHhcCCCeEEEEEE
Confidence            7532    234678999999999999998854

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.35  E-value=7.1e-12  Score=118.47  Aligned_cols=106  Identities=12%  Similarity=0.129  Sum_probs=91.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+|++||||||| -|.+++.+|++|  |++|+|+++|+++.+.+++.+++ .|+..++++...|-.++..   .||-|.
T Consensus        70 L~~G~~lLDiGCG-WG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~-~gl~~~v~v~l~d~rd~~e---~fDrIv  142 (283)
T COG2230          70 LKPGMTLLDIGCG-WGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAA-RGLEDNVEVRLQDYRDFEE---PFDRIV  142 (283)
T ss_pred             CCCCCEEEEeCCC-hhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHH-cCCCcccEEEecccccccc---ccceee
Confidence            4899999999999 577779999976  99999999999999999999998 9999999999999888753   499776


Q ss_pred             e-ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 L-AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~-aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      . ..+-++-.+....+|..+.+.|+|||++++.+
T Consensus       143 SvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         143 SVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             ehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence            3 33223345779999999999999999998877

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.35  E-value=1.6e-11  Score=110.40  Aligned_cols=104  Identities=17%  Similarity=0.273  Sum_probs=81.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.++||+||| -|--+++||+   .|..|+++|+|+.+++.+++++++ .++.  |+..+.|..+...+ ..||+|+.
T Consensus        29 ~~~g~~LDlgcG-~GRNalyLA~---~G~~VtAvD~s~~al~~l~~~a~~-~~l~--i~~~~~Dl~~~~~~-~~yD~I~s  100 (192)
T PF03848_consen   29 LKPGKALDLGCG-EGRNALYLAS---QGFDVTAVDISPVALEKLQRLAEE-EGLD--IRTRVADLNDFDFP-EEYDFIVS  100 (192)
T ss_dssp             S-SSEEEEES-T-TSHHHHHHHH---TT-EEEEEESSHHHHHHHHHHHHH-TT-T--EEEEE-BGCCBS-T-TTEEEEEE
T ss_pred             cCCCcEEEcCCC-CcHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHhh-cCce--eEEEEecchhcccc-CCcCEEEE
Confidence            578899999999 5899999998   499999999999999999999988 5664  99999999876543 48999874


Q ss_pred             cc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .. +..++.+...++++.+.+.++|||.+++..
T Consensus       101 t~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen  101 TVVFMFLQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             ESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            32 224477888999999999999999987754

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.33  E-value=4.1e-12  Score=115.35  Aligned_cols=111  Identities=18%  Similarity=0.302  Sum_probs=89.7

Q ss_pred             HHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC
Q 021008          111 FNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA  190 (318)
Q Consensus       111 ~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~  190 (318)
                      .+++.+.-...+.+|.|+|||| |-++..|++++ |+++|+|||-|++|++.|++...       +.+|..||+.+.. .
T Consensus        20 ~dLla~Vp~~~~~~v~DLGCGp-GnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp-------~~~f~~aDl~~w~-p   89 (257)
T COG4106          20 RDLLARVPLERPRRVVDLGCGP-GNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLP-------DATFEEADLRTWK-P   89 (257)
T ss_pred             HHHHhhCCccccceeeecCCCC-CHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCC-------CCceecccHhhcC-C
Confidence            4555544457889999999998 66777888885 99999999999999999976543       4799999999874 3


Q ss_pred             CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ...+|++|..|..++ .++-.++|..+...|+|||+|.+--+
T Consensus        90 ~~~~dllfaNAvlqW-lpdH~~ll~rL~~~L~Pgg~LAVQmP  130 (257)
T COG4106          90 EQPTDLLFANAVLQW-LPDHPELLPRLVSQLAPGGVLAVQMP  130 (257)
T ss_pred             CCccchhhhhhhhhh-ccccHHHHHHHHHhhCCCceEEEECC
Confidence            358999997665543 25678899999999999999999664

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.33  E-value=1.5e-11  Score=115.31  Aligned_cols=115  Identities=22%  Similarity=0.329  Sum_probs=87.0

Q ss_pred             CCCCEEEEEccCCChHH----HHHHHHhCC----CCcEEEEEeCChHHHHHHHHHhh------c----------------
Q 021008          120 RFPTKIAFIGSGPLPLT----SIVLAINHL----TTTCFDNYDIDPSANSKALSLVS------S----------------  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~t----ai~LA~~~~----~ga~V~gvDid~~ai~~Ar~~~~------~----------------  169 (318)
                      .++.||+++|||+ |-.    ++.+++...    ++.+|+|+|+|+++++.|++.+-      .                
T Consensus        98 ~~~~ri~d~GCgt-Gee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~  176 (264)
T smart00138       98 GRRVRIWSAGCST-GEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK  176 (264)
T ss_pred             CCCEEEEeccccC-ChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence            4568999999996 542    344554321    25799999999999999997531      0                


Q ss_pred             ---CCCCCCCeEEEEccccccCcCCCCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          170 ---DPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       170 ---~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                         ..++..+|+|.++|+.+.+...+.||+|+... +..++.+.+.++++++++.|+|||.|++-.+..+
T Consensus       177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~  246 (264)
T smart00138      177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESL  246 (264)
T ss_pred             EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence               01133589999999999766567899999754 3355778899999999999999999999775544

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.33  E-value=1.5e-11  Score=119.52  Aligned_cols=104  Identities=13%  Similarity=0.050  Sum_probs=84.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.+++.+ ++.+|+++|+|+++++.|++....     .+++++.+|+.+++...+.||+|+.
T Consensus       112 ~~~~~VLDLGcGt-G~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs  184 (340)
T PLN02490        112 DRNLKVVDVGGGT-GFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVS  184 (340)
T ss_pred             CCCCEEEEEecCC-cHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEE
Confidence            4678999999997 56566777654 778999999999999999987543     5789999999998876678999987


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+. ...++.++++++++.|+|||++++..
T Consensus       185 ~~~L~-~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        185 AGSIE-YWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             cChhh-hCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            55332 12466789999999999999987754

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.32  E-value=2.7e-11  Score=107.96  Aligned_cols=117  Identities=15%  Similarity=0.105  Sum_probs=97.9

Q ss_pred             hhHHHHHHHhhcc--cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc
Q 021008          106 LSQLEFNILTQHC--SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD  183 (318)
Q Consensus       106 L~~~E~~~l~~~~--~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD  183 (318)
                      +++.|..++.-..  +.++++++|||||++.+| +-+| ...|..+|++||.|+++++..+++.++ +| -++++++.||
T Consensus        17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~-iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~-fg-~~n~~vv~g~   92 (187)
T COG2242          17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSIT-IEWA-LAGPSGRVIAIERDEEALELIERNAAR-FG-VDNLEVVEGD   92 (187)
T ss_pred             CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHH-HHHH-HhCCCceEEEEecCHHHHHHHHHHHHH-hC-CCcEEEEecc
Confidence            6777866554332  488899999999987776 4556 345999999999999999999999999 89 5999999999


Q ss_pred             ccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          184 IMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       184 a~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +-+...++.+||.||+-.-     ..-..+++.+...|||||+||++-
T Consensus        93 Ap~~L~~~~~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242          93 APEALPDLPSPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             chHhhcCCCCCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence            9887666668999998874     355789999999999999999876

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.31  E-value=3.9e-11  Score=108.22  Aligned_cols=109  Identities=16%  Similarity=0.124  Sum_probs=88.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+||+||||+ |..+..+++.+.+..+|+++|+++.+++.+++.+.. .++..+++|+.+|+.+.+...+.||+|+.
T Consensus        50 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~I~~  127 (239)
T PRK00216         50 RPGDKVLDLACGT-GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD-LGLSGNVEFVQGDAEALPFPDNSFDAVTI  127 (239)
T ss_pred             CCCCeEEEeCCCC-CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc-cccccCeEEEecccccCCCCCCCccEEEE
Confidence            4678999999997 556667776542269999999999999999998876 66778899999999988766568999987


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...++ ...+...+++.+.+.|+|||.+++.+
T Consensus       128 ~~~l~-~~~~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        128 AFGLR-NVPDIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             ecccc-cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence            65443 23567889999999999999988754

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.31  E-value=3e-11  Score=107.71  Aligned_cols=104  Identities=10%  Similarity=0.049  Sum_probs=82.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~  198 (318)
                      .++.+|||+|||+ |..++.+|+. .++.+|++||+|+++++.|++++++ .++ .+++++.+|+.+..... ..+|.++
T Consensus        39 ~~~~~VLDiG~G~-G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~-~~~-~~v~~~~~d~~~~~~~~~~~~d~v~  114 (196)
T PRK07402         39 EPDSVLWDIGAGT-GTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDR-FGV-KNVEVIEGSAPECLAQLAPAPDRVC  114 (196)
T ss_pred             CCCCEEEEeCCCC-CHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHH-hCC-CCeEEEECchHHHHhhCCCCCCEEE
Confidence            5778999999996 4555667764 4789999999999999999999987 777 57999999997632223 3578887


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +...     .+..++++++.+.|+|||.+++...
T Consensus       115 ~~~~-----~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        115 IEGG-----RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             EECC-----cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            7542     3457899999999999999988763

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.30  E-value=3.8e-12  Score=118.41  Aligned_cols=102  Identities=20%  Similarity=0.260  Sum_probs=83.6

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC----CeEEEEccccccCcCCCCccEE
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST----RMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~----ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      +++||||||| +|+-++-||+   .|++|+|||+++++++.|++....++-+..    |++|.+.|+.++..   .||.|
T Consensus        90 g~~ilDvGCG-gGLLSepLAr---lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~---~fDaV  162 (282)
T KOG1270|consen   90 GMKILDVGCG-GGLLSEPLAR---LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTG---KFDAV  162 (282)
T ss_pred             CceEEEeccC-ccccchhhHh---hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhccc---cccee
Confidence            4889999999 7999999997   499999999999999999999655554555    58888888877632   59988


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...-.+. +-.++..++..+.++|||||.+.+..
T Consensus       163 vcsevle-HV~dp~~~l~~l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  163 VCSEVLE-HVKDPQEFLNCLSALLKPNGRLFITT  195 (282)
T ss_pred             eeHHHHH-HHhCHHHHHHHHHHHhCCCCceEeee
Confidence            7543331 34788999999999999999998866

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.30  E-value=3.6e-11  Score=108.11  Aligned_cols=103  Identities=18%  Similarity=0.266  Sum_probs=83.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+.+|||||||++ ..+..+++. .+..+|+++|+++++++.+++...      .+++|+++|+.+.+...+.||+|+.
T Consensus        33 ~~~~~vLDlG~G~G-~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~  104 (240)
T TIGR02072        33 FIPASVLDIGCGTG-YLTRALLKR-FPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVS  104 (240)
T ss_pred             CCCCeEEEECCCcc-HHHHHHHHh-CCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEE
Confidence            45689999999975 455667765 478899999999999999887543      4789999999998766668999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....+. ..+..+++.++.+.|+|||.+++..
T Consensus       105 ~~~l~~-~~~~~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       105 NLALQW-CDDLSQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             hhhhhh-ccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            765442 2467889999999999999999865

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.30  E-value=2.9e-11  Score=116.60  Aligned_cols=106  Identities=13%  Similarity=0.139  Sum_probs=82.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+++|||||||. |.-++.+++.  ....|+|||+|+.++..++..... .+...+++|+.+|+.+++. .+.||+|+.
T Consensus       121 l~g~~VLDIGCG~-G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~-~~~~~~i~~~~~d~e~lp~-~~~FD~V~s  195 (322)
T PRK15068        121 LKGRTVLDVGCGN-GYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKL-LGNDQRAHLLPLGIEQLPA-LKAFDTVFS  195 (322)
T ss_pred             CCCCEEEEeccCC-cHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHh-cCCCCCeEEEeCCHHHCCC-cCCcCEEEE
Confidence            5679999999995 6777788864  123699999999999876654443 3345689999999999986 568999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+. ...+..+++.++++.|+|||.+++..
T Consensus       196 ~~vl~-H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        196 MGVLY-HRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             CChhh-ccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            54332 23567889999999999999998754

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.30  E-value=4.2e-11  Score=108.33  Aligned_cols=100  Identities=11%  Similarity=0.118  Sum_probs=79.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+||+||||+ |..+..+++. .++.+++|||+|+++++.|++...       ++++..+|+.+ ++..++||+|+.
T Consensus        42 ~~~~~VLDiGCG~-G~~~~~L~~~-~~~~~v~giDiS~~~l~~A~~~~~-------~~~~~~~d~~~-~~~~~sfD~V~~  111 (204)
T TIGR03587        42 PKIASILELGANI-GMNLAALKRL-LPFKHIYGVEINEYAVEKAKAYLP-------NINIIQGSLFD-PFKDNFFDLVLT  111 (204)
T ss_pred             CCCCcEEEEecCC-CHHHHHHHHh-CCCCeEEEEECCHHHHHHHHhhCC-------CCcEEEeeccC-CCCCCCEEEEEE
Confidence            5778999999995 6777778764 478999999999999999987542       36788999988 666779999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ +++.++..++++++.+.+  ++.+++-+
T Consensus       112 ~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       112 KGVLIHINPDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             CChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence            6533 667678899999999987  34555543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.29  E-value=3.8e-11  Score=108.62  Aligned_cols=103  Identities=17%  Similarity=0.256  Sum_probs=83.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||. |..+..+++   .+.+|+|+|+|+++++.|++.... .+...++.|.++|+.+++   ++||+|+.
T Consensus        54 ~~~~~vLDiGcG~-G~~~~~la~---~~~~v~gvD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~~~~~---~~fD~ii~  125 (219)
T TIGR02021        54 LKGKRVLDAGCGT-GLLSIELAK---RGAIVKAVDISEQMVQMARNRAQG-RDVAGNVEFEVNDLLSLC---GEFDIVVC  125 (219)
T ss_pred             CCCCEEEEEeCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEECChhhCC---CCcCEEEE
Confidence            4678999999996 566667776   378999999999999999998876 566678999999998875   68999986


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      ...+ +++.++..++++++.+.+++|+.+.+.
T Consensus       126 ~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       126 MDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             hhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            5443 555567788999999999988777664

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.29  E-value=3.5e-11  Score=112.82  Aligned_cols=98  Identities=17%  Similarity=0.147  Sum_probs=75.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCC--CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLT--TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~--ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      ...+.+|||||||. |..+..+++.+..  ++.|+|+|+|+++++.|++..       .+++|.++|+.++|+..++||+
T Consensus        83 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~~~lp~~~~sfD~  154 (272)
T PRK11088         83 DEKATALLDIGCGE-GYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASSHRLPFADQSLDA  154 (272)
T ss_pred             CCCCCeEEEECCcC-CHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeecccCCCcCCceeE
Confidence            35668999999996 5555667764321  358999999999999997642       3588999999999887779999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+.. +.       ...+++++|+|||||.+++...
T Consensus       155 I~~~-~~-------~~~~~e~~rvLkpgG~li~~~p  182 (272)
T PRK11088        155 IIRI-YA-------PCKAEELARVVKPGGIVITVTP  182 (272)
T ss_pred             EEEe-cC-------CCCHHHHHhhccCCCEEEEEeC
Confidence            9843 21       1245788999999999988763

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.29  E-value=2.9e-11  Score=110.65  Aligned_cols=106  Identities=15%  Similarity=0.230  Sum_probs=96.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc----Cc--CCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV----SS--ALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l----~~--~l~~  193 (318)
                      ..++|.++||.= .|+|++.+|....++++|+++|+|+++.+++.++.+. +|..++|+|++|++.+-    ..  +-+.
T Consensus        72 ~~ak~~lelGvf-TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~-agv~~KI~~i~g~a~esLd~l~~~~~~~t  149 (237)
T KOG1663|consen   72 LNAKRTLELGVF-TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL-AGVDHKITFIEGPALESLDELLADGESGT  149 (237)
T ss_pred             hCCceEEEEecc-cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh-ccccceeeeeecchhhhHHHHHhcCCCCc
Confidence            588999999997 6999999998876799999999999999999999998 99999999999999862    12  2348


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||++|++|    ++..+...++++.+.+|+||++++++
T Consensus       150 fDfaFvDa----dK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  150 FDFAFVDA----DKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             eeEEEEcc----chHHHHHHHHHHHhhcccccEEEEec
Confidence            99999999    78999999999999999999999998

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.28  E-value=1e-10  Score=104.37  Aligned_cols=105  Identities=14%  Similarity=0.132  Sum_probs=84.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++.+||++|||+ |..+..+++.+ +. .+++++|+++.+++.+++...    ...+++|+.+|+.+.+...+.||+|+
T Consensus        38 ~~~~~vldiG~G~-G~~~~~~~~~~-~~~~~~~~iD~~~~~~~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~i~  111 (223)
T TIGR01934        38 FKGQKVLDVACGT-GDLAIELAKSA-PDRGKVTGVDFSSEMLEVAKKKSE----LPLNIEFIQADAEALPFEDNSFDAVT  111 (223)
T ss_pred             CCCCeEEEeCCCC-ChhHHHHHHhc-CCCceEEEEECCHHHHHHHHHHhc----cCCCceEEecchhcCCCCCCcEEEEE
Confidence            4788999999997 55556677664 43 799999999999999988764    34689999999999876556899998


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....++ ...+...+++++.+.|+|||++++.+
T Consensus       112 ~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       112 IAFGLR-NVTDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             EeeeeC-CcccHHHHHHHHHHHcCCCcEEEEEE
Confidence            654332 23567789999999999999998765

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.27  E-value=2.9e-12  Score=101.44  Aligned_cols=97  Identities=16%  Similarity=0.233  Sum_probs=59.6

Q ss_pred             EEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--CCccEEEecccc
Q 021008          126 AFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--KDYEVVFLAALV  203 (318)
Q Consensus       126 L~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--~~fD~V~~aalv  203 (318)
                      ||||||++-++ ..+++++ ++++++|+|+|+.+++.|++.+.. .+. ........+..+.....  ++||+|+....+
T Consensus         1 LdiGcG~G~~~-~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl   76 (99)
T PF08242_consen    1 LDIGCGTGRLL-RALLEEL-PDARYTGVDISPSMLERARERLAE-LGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVL   76 (99)
T ss_dssp             -EESTTTS-TT-TTHHHHC--EEEEEEEESSSSTTSTTCCCHHH-CT----EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred             CEeCccChHHH-HHHHHhC-CCCEEEEEECCHHHHHHHHHHhhh-cCC-cceeEEEeecCChhhcccccccceehhhhhH
Confidence            79999975555 4555554 899999999999999999888877 333 33444444444432222  389999976544


Q ss_pred             CCChhHHHHHHHHHHHhccCCeEE
Q 021008          204 GMDKDEKIRVIDHLAKYMAPGALL  227 (318)
Q Consensus       204 gm~~~~k~~vl~~l~r~LkpGg~l  227 (318)
                      ++ .+++.++++++++.|||||.|
T Consensus        77 ~~-l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   77 HH-LEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S---S-HHHHHHHHTTT-TSS-EE
T ss_pred             hh-hhhHHHHHHHHHHHcCCCCCC
Confidence            32 278889999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.27  E-value=5.6e-11  Score=117.19  Aligned_cols=102  Identities=11%  Similarity=0.113  Sum_probs=80.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||.+ ..++.+|++  .|++|+|+|+|+++++.|++..+.   +  ++++..+|..+++   ++||.|+
T Consensus       165 l~~g~rVLDIGcG~G-~~a~~la~~--~g~~V~giDlS~~~l~~A~~~~~~---l--~v~~~~~D~~~l~---~~fD~Iv  233 (383)
T PRK11705        165 LKPGMRVLDIGCGWG-GLARYAAEH--YGVSVVGVTISAEQQKLAQERCAG---L--PVEIRLQDYRDLN---GQFDRIV  233 (383)
T ss_pred             CCCCCEEEEeCCCcc-HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhcc---C--eEEEEECchhhcC---CCCCEEE
Confidence            367889999999964 555678875  389999999999999999988754   2  4889999987762   4899987


Q ss_pred             eccc-cCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAAL-VGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aal-vgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .... .++......++++++.+.|||||.+++..
T Consensus       234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            4432 23334566889999999999999998854

>PRK00811 spermidine synthase; Provisional

Probab=99.24  E-value=6.3e-11  Score=112.23  Aligned_cols=112  Identities=11%  Similarity=0.110  Sum_probs=84.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC-CCC--CCCeEEEEccccccCcC-CCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD-PDL--STRMFFHTTDIMNVSSA-LKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-~gl--~~ri~f~~gDa~~l~~~-l~~fD  195 (318)
                      ..|++||+||||. |.++..+++ +.+..+|++||+|+++++.|++.+... .+.  ..|++++.+|+.+.... .++||
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~-~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD  152 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLK-HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD  152 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHc-CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence            6789999999995 666666665 334569999999999999999988641 122  57999999999874332 34899


Q ss_pred             EEEeccccCCCh---hHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          196 VVFLAALVGMDK---DEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       196 ~V~~aalvgm~~---~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      +|++++.-+...   --..++++.+.+.|+|||++++...+
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~  193 (283)
T PRK00811        153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS  193 (283)
T ss_pred             EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            999986432211   12367899999999999999987543

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.24  E-value=1.1e-10  Score=102.14  Aligned_cols=105  Identities=20%  Similarity=0.268  Sum_probs=82.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ...++|||+|||. |.-++.+|++ .+.++|+++|+|+.|++.|++.++. .++.. ++++.+|..+-.. ..+||+|+.
T Consensus        30 ~~~~~vLDlG~G~-G~i~~~la~~-~~~~~v~~vDi~~~a~~~a~~n~~~-n~~~~-v~~~~~d~~~~~~-~~~fD~Iv~  104 (170)
T PF05175_consen   30 HKGGRVLDLGCGS-GVISLALAKR-GPDAKVTAVDINPDALELAKRNAER-NGLEN-VEVVQSDLFEALP-DGKFDLIVS  104 (170)
T ss_dssp             HTTCEEEEETSTT-SHHHHHHHHT-STCEEEEEEESBHHHHHHHHHHHHH-TTCTT-EEEEESSTTTTCC-TTCEEEEEE
T ss_pred             ccCCeEEEecCCh-HHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHHHh-cCccc-ccccccccccccc-ccceeEEEE
Confidence            3788999999996 5666778875 4888999999999999999999998 77766 9999999987533 458999986


Q ss_pred             cccc--CCC--hhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALV--GMD--KDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalv--gm~--~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      .--.  +.+  .....+++++..++|+|||.+.+
T Consensus       105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen  105 NPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             ---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence            4311  110  13467899999999999998743

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.23  E-value=1.3e-10  Score=110.25  Aligned_cols=110  Identities=16%  Similarity=0.231  Sum_probs=85.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||+|||+ |.-++.+|++ .++++|+++|+|+++++.|+++++. .|+.++++|+++|+.+.. ....||+|+.
T Consensus       120 ~~~~~vLDlG~Gs-G~i~~~la~~-~~~~~v~avDis~~al~~A~~n~~~-~~~~~~i~~~~~D~~~~~-~~~~fD~Iv~  195 (284)
T TIGR03533       120 EPVKRILDLCTGS-GCIAIACAYA-FPEAEVDAVDISPDALAVAEINIER-HGLEDRVTLIQSDLFAAL-PGRKYDLIVS  195 (284)
T ss_pred             CCCCEEEEEeCch-hHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEECchhhcc-CCCCccEEEE
Confidence            4568999999996 5666778875 4789999999999999999999998 788889999999987532 2247999986


Q ss_pred             cc-------ccCCC-----------------hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          200 AA-------LVGMD-----------------KDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       200 aa-------lvgm~-----------------~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      .-       +..++                 .....+++..+.++|+|||.+++..++
T Consensus       196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~  253 (284)
T TIGR03533       196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN  253 (284)
T ss_pred             CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            31       00000                 123467899999999999999987653

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.22  E-value=2.9e-10  Score=102.71  Aligned_cols=103  Identities=20%  Similarity=0.239  Sum_probs=80.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.   +..|+|+|+|+.+++.|++.... .+...+++|+.+|..   ...+.||+|+.
T Consensus        62 ~~~~~vLDvGcG~-G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~~---~~~~~fD~v~~  133 (230)
T PRK07580         62 LTGLRILDAGCGV-GSLSIPLARR---GAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGDLE---SLLGRFDTVVC  133 (230)
T ss_pred             CCCCEEEEEeCCC-CHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcCch---hccCCcCEEEE
Confidence            5678999999996 5566778763   67899999999999999999887 677779999999943   23458999986


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      ...+ +++.+...++++.+.+.+++|+++.+.
T Consensus       134 ~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~  165 (230)
T PRK07580        134 LDVLIHYPQEDAARMLAHLASLTRGSLIFTFA  165 (230)
T ss_pred             cchhhcCCHHHHHHHHHHHHhhcCCeEEEEEC
Confidence            5433 556667778999998877666655543

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.22  E-value=1.9e-10  Score=103.68  Aligned_cols=101  Identities=14%  Similarity=0.101  Sum_probs=78.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+||+||||. |+.+..+++.   ..+|+++|+++++++.|++.+++ .|+. +++++.+|+.+.....+.||+|+
T Consensus        76 ~~~~~~VLeiG~Gs-G~~t~~la~~---~~~v~~vd~~~~~~~~a~~~~~~-~~~~-~v~~~~~d~~~~~~~~~~fD~I~  149 (212)
T PRK00312         76 LKPGDRVLEIGTGS-GYQAAVLAHL---VRRVFSVERIKTLQWEAKRRLKQ-LGLH-NVSVRHGDGWKGWPAYAPFDRIL  149 (212)
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHHH---hCEEEEEeCCHHHHHHHHHHHHH-CCCC-ceEEEECCcccCCCcCCCcCEEE
Confidence            36779999999996 5556678864   35899999999999999999988 6774 59999999876433346899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +.+..       ..+.+.+.+.|+|||++++--.
T Consensus       150 ~~~~~-------~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        150 VTAAA-------PEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EccCc-------hhhhHHHHHhcCCCcEEEEEEc
Confidence            87632       2234567899999999887554

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.22  E-value=1.9e-10  Score=103.51  Aligned_cols=104  Identities=19%  Similarity=0.257  Sum_probs=76.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..-++++++|||.+ .-+..||.+   --+++++|+++.|+++||+..+.   . .+|+|+++|+.+.. ..+.||+|.+
T Consensus        42 ~ry~~alEvGCs~G-~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~---~-~~V~~~~~dvp~~~-P~~~FDLIV~  112 (201)
T PF05401_consen   42 RRYRRALEVGCSIG-VLTERLAPR---CDRLLAVDISPRALARARERLAG---L-PHVEWIQADVPEFW-PEGRFDLIVL  112 (201)
T ss_dssp             SSEEEEEEE--TTS-HHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEE
T ss_pred             cccceeEecCCCcc-HHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCC---C-CCeEEEECcCCCCC-CCCCeeEEEE
Confidence            34479999999964 444568875   46899999999999999998775   3 68999999997752 3458999987


Q ss_pred             cccc-CC-ChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AALV-GM-DKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalv-gm-~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +.+. -+ +.++..++++.+.+.|+|||.||+-+.
T Consensus       113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            7633 22 356788899999999999999999774

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PLN02366 spermidine synthase

Probab=99.21  E-value=1.1e-10  Score=112.09  Aligned_cols=110  Identities=15%  Similarity=0.218  Sum_probs=84.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC--CC-CCCeEEEEccccccCcCC--CCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP--DL-STRMFFHTTDIMNVSSAL--KDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~--gl-~~ri~f~~gDa~~l~~~l--~~f  194 (318)
                      ..|+|||+||+|. |.++..+++ |.+..+|+.||||+++++.|++.+.. .  ++ +.|++++.+|+.+.....  +.|
T Consensus        90 ~~pkrVLiIGgG~-G~~~rellk-~~~v~~V~~VEiD~~Vi~~ar~~f~~-~~~~~~dpRv~vi~~Da~~~l~~~~~~~y  166 (308)
T PLN02366         90 PNPKKVLVVGGGD-GGVLREIAR-HSSVEQIDICEIDKMVIDVSKKFFPD-LAVGFDDPRVNLHIGDGVEFLKNAPEGTY  166 (308)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhhhh-hccccCCCceEEEEChHHHHHhhccCCCC
Confidence            6789999999995 666677775 43347899999999999999998764 2  23 469999999997653332  479


Q ss_pred             cEEEeccccCCChh---HHHHHHHHHHHhccCCeEEEEEcC
Q 021008          195 EVVFLAALVGMDKD---EKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       195 D~V~~aalvgm~~~---~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+|++++.-+....   -..++++.++++|+|||++++...
T Consensus       167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~  207 (308)
T PLN02366        167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE  207 (308)
T ss_pred             CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence            99999875422111   246899999999999999987653

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.21  E-value=1.4e-10  Score=114.36  Aligned_cols=109  Identities=18%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~V  197 (318)
                      ..+..+||||||. |.-++.+|+++ |+..|+|||+++.+++.|.+.+.. .|+ .++.++.+|+..+.  ...+++|.|
T Consensus       121 ~~~p~vLEIGcGs-G~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~-~gL-~NV~~i~~DA~~ll~~~~~~s~D~I  196 (390)
T PRK14121        121 NQEKILIEIGFGS-GRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIEL-LNL-KNLLIINYDARLLLELLPSNSVEKI  196 (390)
T ss_pred             CCCCeEEEEcCcc-cHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHH-cCC-CcEEEEECCHHHhhhhCCCCceeEE
Confidence            4567999999996 66667888876 999999999999999999999887 787 46999999997642  344589999


Q ss_pred             EeccccCCChhHH-----HHHHHHHHHhccCCeEEEEEcC
Q 021008          198 FLAALVGMDKDEK-----IRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       198 ~~aalvgm~~~~k-----~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+.--.+|++..-     ..++++++|+|+|||.+.+++.
T Consensus       197 ~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD  236 (390)
T PRK14121        197 FVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD  236 (390)
T ss_pred             EEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence            9865455543221     5789999999999999999874

>TIGR03438 probable methyltransferase

Probab=99.20  E-value=2e-10  Score=109.61  Aligned_cols=123  Identities=15%  Similarity=0.211  Sum_probs=85.4

Q ss_pred             hHHHHHHHhhcc------cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE
Q 021008          107 SQLEFNILTQHC------SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH  180 (318)
Q Consensus       107 ~~~E~~~l~~~~------~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~  180 (318)
                      ++.|.+.|..++      ..++.+||++|||++-.|.. |++....+.+|++||+|+++++.|++.... .....++.++
T Consensus        43 tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~-Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~-~~p~~~v~~i  120 (301)
T TIGR03438        43 TRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRL-LLDALRQPARYVPIDISADALKESAAALAA-DYPQLEVHGI  120 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHH-HHHhhccCCeEEEEECCHHHHHHHHHHHHh-hCCCceEEEE
Confidence            555555444433      24668999999998666654 554432278999999999999999887665 2234578889


Q ss_pred             EccccccCcCCCCc----c-EEEeccccC-CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          181 TTDIMNVSSALKDY----E-VVFLAALVG-MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       181 ~gDa~~l~~~l~~f----D-~V~~aalvg-m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +||..+...-...+    + ++|..+..+ ++.++..++|+++++.|+|||.+++..
T Consensus       121 ~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       121 CADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             EEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            99987632111222    2 444444443 467788899999999999999998744

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.5e-10  Score=107.54  Aligned_cols=105  Identities=21%  Similarity=0.266  Sum_probs=91.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+++||++.|.|.+-+| .+||....|.++|+++|+.++..+.|+++++. .|+++++++..+|+.+..... .||+||
T Consensus        92 i~pg~rVlEAGtGSG~lt-~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-~~l~d~v~~~~~Dv~~~~~~~-~vDav~  168 (256)
T COG2519          92 ISPGSRVLEAGTGSGALT-AYLARAVGPEGHVTTYEIREDFAKTARENLSE-FGLGDRVTLKLGDVREGIDEE-DVDAVF  168 (256)
T ss_pred             CCCCCEEEEcccCchHHH-HHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-hccccceEEEecccccccccc-ccCEEE
Confidence            489999999999976565 46776556779999999999999999999999 899999999999999875444 899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++-      ++..++++++.+.|+|||.+++-.+
T Consensus       169 LDm------p~PW~~le~~~~~Lkpgg~~~~y~P  196 (256)
T COG2519         169 LDL------PDPWNVLEHVSDALKPGGVVVVYSP  196 (256)
T ss_pred             EcC------CChHHHHHHHHHHhCCCcEEEEEcC
Confidence            885      4678899999999999999998773

>TIGR00452 methyltransferase, putative

Probab=99.20  E-value=3.8e-10  Score=108.66  Aligned_cols=105  Identities=11%  Similarity=0.086  Sum_probs=80.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ..++++|||||||. |+-++.++..   |+ .|+|||+|+.++..++..-+. .+...++.+..+++.+++.. ..||+|
T Consensus       119 ~~~g~~VLDvGCG~-G~~~~~~~~~---g~~~v~GiDpS~~ml~q~~~~~~~-~~~~~~v~~~~~~ie~lp~~-~~FD~V  192 (314)
T TIGR00452       119 PLKGRTILDVGCGS-GYHMWRMLGH---GAKSLVGIDPTVLFLCQFEAVRKL-LDNDKRAILEPLGIEQLHEL-YAFDTV  192 (314)
T ss_pred             CCCCCEEEEeccCC-cHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHHHHH-hccCCCeEEEECCHHHCCCC-CCcCEE
Confidence            36789999999996 6666666653   43 799999999998876443332 23346899999999998753 489999


Q ss_pred             Eecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |....+ ++  .+..+++.++++.|||||.|++..
T Consensus       193 ~s~gvL~H~--~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       193 FSMGVLYHR--KSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             EEcchhhcc--CCHHHHHHHHHHhcCCCCEEEEEE
Confidence            976533 43  466789999999999999998754

Known examples to date are restricted to the proteobacteria.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.19  E-value=2.3e-10  Score=106.15  Aligned_cols=111  Identities=19%  Similarity=0.252  Sum_probs=81.2

Q ss_pred             HHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc
Q 021008          104 IKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD  183 (318)
Q Consensus       104 ~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD  183 (318)
                      ...++.-...+... ..++++|||||||+ |..++.+++ . ...+|+|+|+|+.+++.|+++++. .++..++.+..+|
T Consensus       103 h~tt~~~l~~l~~~-~~~~~~VLDiGcGs-G~l~i~~~~-~-g~~~v~giDis~~~l~~A~~n~~~-~~~~~~~~~~~~~  177 (250)
T PRK00517        103 HPTTRLCLEALEKL-VLPGKTVLDVGCGS-GILAIAAAK-L-GAKKVLAVDIDPQAVEAARENAEL-NGVELNVYLPQGD  177 (250)
T ss_pred             CHHHHHHHHHHHhh-cCCCCEEEEeCCcH-HHHHHHHHH-c-CCCeEEEEECCHHHHHHHHHHHHH-cCCCceEEEccCC
Confidence            34444444444332 36789999999996 777777665 2 233599999999999999999987 6776666655443


Q ss_pred             ccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          184 IMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       184 a~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .        .||+|+....    .....+++.++.+.|||||.+++..
T Consensus       178 ~--------~fD~Vvani~----~~~~~~l~~~~~~~LkpgG~lilsg  213 (250)
T PRK00517        178 L--------KADVIVANIL----ANPLLELAPDLARLLKPGGRLILSG  213 (250)
T ss_pred             C--------CcCEEEEcCc----HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            2        7999986432    2455678999999999999999853

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.19  E-value=3.2e-10  Score=109.49  Aligned_cols=103  Identities=14%  Similarity=0.102  Sum_probs=81.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+||+||||+ |..++.+|+.......|+++|+++++++.|++.++. .|. +++.++++|+.+.+.+.+.||+|+
T Consensus        78 i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~-~g~-~nV~~i~gD~~~~~~~~~~fD~Ii  154 (322)
T PRK13943         78 LDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR-LGI-ENVIFVCGDGYYGVPEFAPYDVIF  154 (322)
T ss_pred             CCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH-cCC-CcEEEEeCChhhcccccCCccEEE
Confidence            36778999999996 677777887642345899999999999999999887 776 679999999987665566899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++..+       ..+...+.+.|+|||++++-.
T Consensus       155 ~~~g~-------~~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        155 VTVGV-------DEVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             ECCch-------HHhHHHHHHhcCCCCEEEEEe
Confidence            87532       112344678999999988754

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.19  E-value=7.4e-11  Score=107.42  Aligned_cols=104  Identities=14%  Similarity=0.103  Sum_probs=78.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.|||+|||| .|+.+.+||+...+...|++||++++..+.|++.++. .|. .++++++||+..-..+.+.||.|+
T Consensus        70 l~pg~~VLeIGtG-sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~-~~~-~nv~~~~gdg~~g~~~~apfD~I~  146 (209)
T PF01135_consen   70 LKPGDRVLEIGTG-SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR-LGI-DNVEVVVGDGSEGWPEEAPFDRII  146 (209)
T ss_dssp             C-TT-EEEEES-T-TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH-HTT-HSEEEEES-GGGTTGGG-SEEEEE
T ss_pred             cCCCCEEEEecCC-CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH-hcc-CceeEEEcchhhccccCCCcCEEE
Confidence            4789999999999 5888888997554567899999999999999999998 666 489999999987544456899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +.+-+.   +....    +.+.|++||++++--.
T Consensus       147 v~~a~~---~ip~~----l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  147 VTAAVP---EIPEA----LLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             ESSBBS---S--HH----HHHTEEEEEEEEEEES
T ss_pred             Eeeccc---hHHHH----HHHhcCCCcEEEEEEc
Confidence            877552   22233    4678999999988554

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK05785 hypothetical protein; Provisional

Probab=99.19  E-value=2.6e-10  Score=104.64  Aligned_cols=92  Identities=13%  Similarity=0.033  Sum_probs=74.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++..  +.+|+|+|+|++|++.|++.          ..++++|+.++|+..++||+|+.
T Consensus        50 ~~~~~VLDlGcGt-G~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~  116 (226)
T PRK05785         50 GRPKKVLDVAAGK-GELSYHFKKVF--KYYVVALDYAENMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMS  116 (226)
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc----------cceEEechhhCCCCCCCEEEEEe
Confidence            3578999999997 45566787753  68999999999999999752          13578999999988889999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCe
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGA  225 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg  225 (318)
                      ...+. ...+..+++++++|+|||+.
T Consensus       117 ~~~l~-~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        117 SFALH-ASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             cChhh-ccCCHHHHHHHHHHHhcCce
Confidence            65443 34678899999999999954

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.18  E-value=1.3e-10  Score=98.32  Aligned_cols=96  Identities=16%  Similarity=0.262  Sum_probs=72.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||.+ ..+..+++.   |.+|+|+|+++.+++.            ..+.+...+..+.+...+.||+|+.
T Consensus        21 ~~~~~vLDiGcG~G-~~~~~l~~~---~~~~~g~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~~fD~i~~   84 (161)
T PF13489_consen   21 KPGKRVLDIGCGTG-SFLRALAKR---GFEVTGVDISPQMIEK------------RNVVFDNFDAQDPPFPDGSFDLIIC   84 (161)
T ss_dssp             TTTSEEEEESSTTS-HHHHHHHHT---TSEEEEEESSHHHHHH------------TTSEEEEEECHTHHCHSSSEEEEEE
T ss_pred             CCCCEEEEEcCCCC-HHHHHHHHh---CCEEEEEECCHHHHhh------------hhhhhhhhhhhhhhccccchhhHhh
Confidence            68899999999964 555666763   7799999999999988            2233444444444344468999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ...+ ++  .+..++++++.+.|||||.+++....
T Consensus        85 ~~~l~~~--~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   85 NDVLEHL--PDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             ESSGGGS--SHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             HHHHhhc--ccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            6544 43  47899999999999999999998853

...

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.18  E-value=3.8e-10  Score=107.00  Aligned_cols=117  Identities=17%  Similarity=0.171  Sum_probs=87.4

Q ss_pred             HHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc
Q 021008          104 IKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD  183 (318)
Q Consensus       104 ~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD  183 (318)
                      ...+++-...+.+. ..++++|||||||+ |..++.+++.  ...+|+++|+|+.+++.|++++.. .++..++.+..+|
T Consensus       143 h~tt~l~l~~l~~~-~~~g~~VLDvGcGs-G~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~-n~~~~~~~~~~~~  217 (288)
T TIGR00406       143 HPTTSLCLEWLEDL-DLKDKNVIDVGCGS-GILSIAALKL--GAAKVVGIDIDPLAVESARKNAEL-NQVSDRLQVKLIY  217 (288)
T ss_pred             CHHHHHHHHHHHhh-cCCCCEEEEeCCCh-hHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHH-cCCCcceEEEecc
Confidence            33444433333332 35779999999997 6666777752  345899999999999999999987 7888888888887


Q ss_pred             ccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          184 IMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       184 a~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....  ..++||+|+...+    .....+++.++.+.|||||.+++-.
T Consensus       218 ~~~~--~~~~fDlVvan~~----~~~l~~ll~~~~~~LkpgG~li~sg  259 (288)
T TIGR00406       218 LEQP--IEGKADVIVANIL----AEVIKELYPQFSRLVKPGGWLILSG  259 (288)
T ss_pred             cccc--cCCCceEEEEecC----HHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            4432  2348999986543    2455689999999999999998854

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK04266 fibrillarin; Provisional

Probab=99.18  E-value=3.2e-10  Score=104.37  Aligned_cols=103  Identities=12%  Similarity=0.185  Sum_probs=77.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cC-CCCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SA-LKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~-l~~fD  195 (318)
                      ..++.+|||+|||+ |..++.+|+.. ++.+|+++|+++++++...+.++.   . .++.++.+|+.+..  .. ...||
T Consensus        70 i~~g~~VlD~G~G~-G~~~~~la~~v-~~g~V~avD~~~~ml~~l~~~a~~---~-~nv~~i~~D~~~~~~~~~l~~~~D  143 (226)
T PRK04266         70 IKKGSKVLYLGAAS-GTTVSHVSDIV-EEGVVYAVEFAPRPMRELLEVAEE---R-KNIIPILADARKPERYAHVVEKVD  143 (226)
T ss_pred             CCCCCEEEEEccCC-CHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhh---c-CCcEEEECCCCCcchhhhccccCC
Confidence            46888999999997 45556788754 467999999999999988777665   1 57899999987521  11 23699


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +||.+.-   +......+++++++.|||||.+++.
T Consensus       144 ~i~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        144 VIYQDVA---QPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             EEEECCC---ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            9996531   2223355789999999999999883

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.18  E-value=2.8e-10  Score=109.10  Aligned_cols=108  Identities=19%  Similarity=0.279  Sum_probs=84.4

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      +.+|||+|||+ |.-++.+|+. .|+++|+++|+|+++++.|+++++. .|+.++++|+++|+.+.. ..++||+|+..-
T Consensus       134 ~~~VLDlG~Gs-G~iai~la~~-~p~~~V~avDis~~al~~A~~n~~~-~~l~~~i~~~~~D~~~~l-~~~~fDlIvsNP  209 (307)
T PRK11805        134 VTRILDLCTGS-GCIAIACAYA-FPDAEVDAVDISPDALAVAEINIER-HGLEDRVTLIESDLFAAL-PGRRYDLIVSNP  209 (307)
T ss_pred             CCEEEEEechh-hHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEECchhhhC-CCCCccEEEECC
Confidence            37999999996 5666778875 4899999999999999999999998 788889999999987532 224799998631


Q ss_pred             ----------------------ccCCC--hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          202 ----------------------LVGMD--KDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       202 ----------------------lvgm~--~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                                            +.+-.  .....++++++.+.|+|||.+++..++
T Consensus       210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~  265 (307)
T PRK11805        210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN  265 (307)
T ss_pred             CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence                                  00000  133568899999999999999986643

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.18  E-value=1.8e-10  Score=115.15  Aligned_cols=110  Identities=13%  Similarity=0.128  Sum_probs=87.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-CCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-LKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-l~~fD~V  197 (318)
                      +.++.+|||+||||+|.|. .+|+...++++|+++|+++.+++.+++++++ .|+. +++++++|+.+++.. .+.||.|
T Consensus       235 ~~~g~~VLD~cagpGgkt~-~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r-~g~~-~v~~~~~Da~~l~~~~~~~fD~V  311 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTT-AIAELMKDQGKILAVDISREKIQLVEKHAKR-LKLS-SIEIKIADAERLTEYVQDTFDRI  311 (431)
T ss_pred             CCCCCEEEEeCCCccHHHH-HHHHHcCCCCEEEEEECCHHHHHHHHHHHHH-cCCC-eEEEEECchhhhhhhhhccCCEE
Confidence            3678899999999987775 5665544578999999999999999999998 8884 599999999887522 3479999


Q ss_pred             Eecccc---CC---Ch---------------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALV---GM---DK---------------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalv---gm---~~---------------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++++-.   |+   ++               ....++|.++++.|||||.+++-.
T Consensus       312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  366 (431)
T PRK14903        312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST  366 (431)
T ss_pred             EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            987643   22   11               123678999999999999998866

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.18  E-value=1.5e-10  Score=115.79  Aligned_cols=110  Identities=17%  Similarity=0.099  Sum_probs=86.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc----CCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS----ALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~----~l~~f  194 (318)
                      +.++.+|||+||||++.|. .+|+.....++|+++|+++.+++.+++++++ .|+. +++++++|+.+++.    ..+.|
T Consensus       250 ~~~g~~VLDl~ag~G~kt~-~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r-~g~~-~v~~~~~D~~~~~~~~~~~~~~f  326 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTT-HIAELMGDQGEIWAVDRSASRLKKLQENAQR-LGLK-SIKILAADSRNLLELKPQWRGYF  326 (434)
T ss_pred             CCCcCEEEEeCCCCchhHH-HHHHHhCCCceEEEEcCCHHHHHHHHHHHHH-cCCC-eEEEEeCChhhcccccccccccC
Confidence            3577999999999977775 5666543457999999999999999999998 8885 59999999998752    23479


Q ss_pred             cEEEecccc---CC---Chh---------------HHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALV---GM---DKD---------------EKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalv---gm---~~~---------------~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |.|++++-.   |.   ..+               ...++++++++.|||||+|++-.
T Consensus       327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst  384 (434)
T PRK14901        327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT  384 (434)
T ss_pred             CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            999987532   11   001               13688999999999999998754

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.18  E-value=2.7e-10  Score=106.77  Aligned_cols=110  Identities=14%  Similarity=0.198  Sum_probs=86.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      +.++.+|||+||||++.|. .+|+....+..|+++|+++.+++.+++.+++ .|+ .+++++.+|+.+++...+.||.|+
T Consensus        69 ~~~g~~VLDl~ag~G~kt~-~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~-~g~-~~v~~~~~D~~~~~~~~~~fD~Vl  145 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTT-QISALMKNEGAIVANEFSKSRTKVLIANINR-CGV-LNVAVTNFDGRVFGAAVPKFDAIL  145 (264)
T ss_pred             CCCcCEEEEECCCchHHHH-HHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-cCC-CcEEEecCCHHHhhhhccCCCEEE
Confidence            3677899999999987775 4565543456999999999999999999998 787 469999999988765555799999


Q ss_pred             ecccc---CC---Ch---------------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV---GM---DK---------------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv---gm---~~---------------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +++-.   |+   +.               ....++|++..+.|||||+|++-.
T Consensus       146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            87532   11   00               122469999999999999998654

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.17  E-value=3.7e-10  Score=103.20  Aligned_cols=108  Identities=19%  Similarity=0.283  Sum_probs=82.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+.+|||+|||+ |..++.+++. .++..|+|+|+|+.+++.|++.+.. .|+. +++++++|+.+. ...++||+|+.
T Consensus        86 ~~~~~ilDig~G~-G~~~~~l~~~-~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~-~~~~~~~d~~~~-~~~~~fD~Vi~  160 (251)
T TIGR03534        86 KGPLRVLDLGTGS-GAIALALAKE-RPDARVTAVDISPEALAVARKNAAR-LGLD-NVTFLQSDWFEP-LPGGKFDLIVS  160 (251)
T ss_pred             cCCCeEEEEeCcH-hHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHH-cCCC-eEEEEECchhcc-CcCCceeEEEE
Confidence            4567999999996 6666778875 4789999999999999999999987 6774 799999999873 33458999986


Q ss_pred             ccc-c------CCChh------------------HHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AAL-V------GMDKD------------------EKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aal-v------gm~~~------------------~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .-- +      .+...                  ....+++++.+.|+|||.+++...
T Consensus       161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~  218 (251)
T TIGR03534       161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG  218 (251)
T ss_pred             CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            310 0      01111                  124789999999999999988653

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK01581 speE spermidine synthase; Validated

Probab=99.17  E-value=2.2e-10  Score=111.94  Aligned_cols=111  Identities=16%  Similarity=0.164  Sum_probs=83.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhh-----cCCCC-CCCeEEEEccccccCcC-C
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVS-----SDPDL-STRMFFHTTDIMNVSSA-L  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~-----~~~gl-~~ri~f~~gDa~~l~~~-l  191 (318)
                      ...|+|||+||+| .|+++..+.+ |.+..+|+.||||+++++.|++...     + .++ +.|++++.+|+.+.... .
T Consensus       148 h~~PkrVLIIGgG-dG~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~-~~~~DpRV~vvi~Da~~fL~~~~  224 (374)
T PRK01581        148 VIDPKRVLILGGG-DGLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNK-SAFFDNRVNVHVCDAKEFLSSPS  224 (374)
T ss_pred             CCCCCEEEEECCC-HHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhcc-ccCCCCceEEEECcHHHHHHhcC
Confidence            3788999999999 5777766664 5456899999999999999997321     1 122 57999999999984333 3


Q ss_pred             CCccEEEeccccCC----ChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          192 KDYEVVFLAALVGM----DKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       192 ~~fD~V~~aalvgm----~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +.||+|+++..-+.    ...-..++++.+++.|+|||++++...
T Consensus       225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            48999999863221    112346799999999999999988764

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.17  E-value=2.7e-10  Score=103.69  Aligned_cols=104  Identities=15%  Similarity=0.214  Sum_probs=82.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V~  198 (318)
                      .++.+||+||||+ |..+..+++   .+++|+++|+++.+++.|++.+.. .+.  +++|+.+|+.+.+. ..+.||+|+
T Consensus        47 ~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~fD~Ii  119 (233)
T PRK05134         47 LFGKRVLDVGCGG-GILSESMAR---LGADVTGIDASEENIEVARLHALE-SGL--KIDYRQTTAEELAAEHPGQFDVVT  119 (233)
T ss_pred             CCCCeEEEeCCCC-CHHHHHHHH---cCCeEEEEcCCHHHHHHHHHHHHH-cCC--ceEEEecCHHHhhhhcCCCccEEE
Confidence            5678999999996 556667776   378999999999999999988876 343  68899999887652 235899998


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....+. ...+...+++.+.+.|+|||.+++..
T Consensus       120 ~~~~l~-~~~~~~~~l~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        120 CMEMLE-HVPDPASFVRACAKLVKPGGLVFFST  151 (233)
T ss_pred             EhhHhh-ccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence            765443 22466789999999999999998865

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.16  E-value=2e-10  Score=114.97  Aligned_cols=109  Identities=15%  Similarity=0.188  Sum_probs=84.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~  198 (318)
                      .++.+|||+||||++.|. .+|+...++++|+++|+++.+++.+++++++ .|+.. ++++++|+.+++..+ +.||+|+
T Consensus       249 ~~g~~VLDlgaG~G~~t~-~la~~~~~~~~v~avDi~~~~l~~~~~n~~~-~g~~~-v~~~~~D~~~~~~~~~~~fD~Vl  325 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTT-HIAELLKNTGKVVALDIHEHKLKLIEENAKR-LGLTN-IETKALDARKVHEKFAEKFDKIL  325 (444)
T ss_pred             CCCCEEEEeCCCCCHHHH-HHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCe-EEEEeCCcccccchhcccCCEEE
Confidence            567899999999876664 6666544678999999999999999999998 88854 999999998864333 4899999


Q ss_pred             ecccc---CC-C----------hh-------HHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV---GM-D----------KD-------EKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv---gm-~----------~~-------~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +++-.   |. .          ..       ...++++++.+.|||||.|++..
T Consensus       326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            87521   11 0          00       12468999999999999998754

>PRK06202 hypothetical protein; Provisional

Probab=99.16  E-value=4.3e-10  Score=102.74  Aligned_cols=104  Identities=20%  Similarity=0.147  Sum_probs=77.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHh---CCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAIN---HLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~---~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      .++.+|||||||++. .+..|++.   ..++++|+|+|+|+++++.|++....     .++++.++++.+++...++||+
T Consensus        59 ~~~~~iLDlGcG~G~-~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~~~~~~~~~l~~~~~~fD~  132 (232)
T PRK06202         59 DRPLTLLDIGCGGGD-LAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-----PGVTFRQAVSDELVAEGERFDV  132 (232)
T ss_pred             CCCcEEEEeccCCCH-HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-----CCCeEEEEecccccccCCCccE
Confidence            567899999999754 44566642   23567999999999999999887554     3567888887777655568999


Q ss_pred             EEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+... +.+++.++..++++++++.++  |.+++.+
T Consensus       133 V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d  166 (232)
T PRK06202        133 VTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND  166 (232)
T ss_pred             EEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence            99764 335555556789999999998  4444544

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.15  E-value=5.5e-10  Score=98.10  Aligned_cols=103  Identities=19%  Similarity=0.273  Sum_probs=78.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++||++|||. |.-++.+++.   +.+|+++|+|+++++.|++.++. .+.  +++++.+|+.+.+  .++||+|+.
T Consensus        18 ~~~~~vLdlG~G~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~-~~~--~~~~~~~d~~~~~--~~~fD~Vi~   88 (179)
T TIGR00537        18 LKPDDVLEIGAGT-GLVAIRLKGK---GKCILTTDINPFAVKELRENAKL-NNV--GLDVVMTDLFKGV--RGKFDVILF   88 (179)
T ss_pred             cCCCeEEEeCCCh-hHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHH-cCC--ceEEEEccccccc--CCcccEEEE
Confidence            5678999999996 5555677763   44999999999999999999886 444  6899999988754  248999986


Q ss_pred             cccc-CCC-------------------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMD-------------------KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~-------------------~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .--. ..+                   .....++++++.++|+|||.+++-.
T Consensus        89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence            5311 111                   1124678999999999999987765

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.14  E-value=3.2e-10  Score=113.11  Aligned_cols=110  Identities=14%  Similarity=0.116  Sum_probs=85.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--ALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l~~fD~  196 (318)
                      +.++.+|||+||||++.|. .+|+.. ++++|+++|+++++++.+++++++ .|+..++.+..+|+.+.+.  ..+.||.
T Consensus       236 ~~~g~~VLDlcag~G~kt~-~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r-~g~~~~v~~~~~d~~~~~~~~~~~~fD~  312 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTT-HILELA-PQAQVVALDIHEHRLKRVYENLKR-LGLTIKAETKDGDGRGPSQWAENEQFDR  312 (426)
T ss_pred             CCCCCeEEEeCCCccHHHH-HHHHHc-CCCeEEEEeCCHHHHHHHHHHHHH-cCCCeEEEEeccccccccccccccccCE
Confidence            3678999999999977775 566544 578999999999999999999998 7876556668888876543  3457999


Q ss_pred             EEecccc---CC-C--hh---------------HHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALV---GM-D--KD---------------EKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalv---gm-~--~~---------------~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |++++-.   |+ .  .+               ...++|.+.++.|||||.|++-.
T Consensus       313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst  368 (426)
T TIGR00563       313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT  368 (426)
T ss_pred             EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            9987532   21 0  01               13679999999999999999865

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=3.4e-10  Score=102.70  Aligned_cols=123  Identities=13%  Similarity=0.095  Sum_probs=90.6

Q ss_pred             hHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE
Q 021008          102 NYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT  181 (318)
Q Consensus       102 ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~  181 (318)
                      .|..-..+...++....+.++.+||+|||| .|+.+.+||+-   ..+|+.||++++-.+.|+++++. +|+.+ |.+++
T Consensus        53 qtis~P~~vA~m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l---~~~V~siEr~~~L~~~A~~~L~~-lg~~n-V~v~~  126 (209)
T COG2518          53 QTISAPHMVARMLQLLELKPGDRVLEIGTG-SGYQAAVLARL---VGRVVSIERIEELAEQARRNLET-LGYEN-VTVRH  126 (209)
T ss_pred             ceecCcHHHHHHHHHhCCCCCCeEEEECCC-chHHHHHHHHH---hCeEEEEEEcHHHHHHHHHHHHH-cCCCc-eEEEE
Confidence            333333344333333335899999999999 59999999983   44999999999999999999999 89855 99999


Q ss_pred             ccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCccc
Q 021008          182 TDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARA  237 (318)
Q Consensus       182 gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~  237 (318)
                      ||+..=-...+.||.|++.+-+.   +-...+    .+.|||||++++=-+++...
T Consensus       127 gDG~~G~~~~aPyD~I~Vtaaa~---~vP~~L----l~QL~~gGrlv~PvG~~~~q  175 (209)
T COG2518         127 GDGSKGWPEEAPYDRIIVTAAAP---EVPEAL----LDQLKPGGRLVIPVGSGPAQ  175 (209)
T ss_pred             CCcccCCCCCCCcCEEEEeeccC---CCCHHH----HHhcccCCEEEEEEccCCcE
Confidence            99986333456899999877542   122223    57899999998876544433

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.14  E-value=7.3e-10  Score=109.15  Aligned_cols=106  Identities=12%  Similarity=0.109  Sum_probs=81.4

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC--CCeEEEEccccccCcCCCCccEEEe
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS--TRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~--~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      +.+|||+|||. |.-++.+++++ |+++|+++|+|+.|++.|++.++. .+..  .+++|+.+|+.+-. ...+||+|+.
T Consensus       229 ~~~VLDLGCGt-Gvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l~~~-~~~~fDlIls  304 (378)
T PRK15001        229 EGEIVDLGCGN-GVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNALSGV-EPFRFNAVLC  304 (378)
T ss_pred             CCeEEEEeccc-cHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEccccccC-CCCCEEEEEE
Confidence            46999999996 56667888764 899999999999999999999876 4432  48999999987532 2247999997


Q ss_pred             cccc--C--CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV--G--MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv--g--m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .--.  +  ++.....+++.+..++|+|||.+.+-.
T Consensus       305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            4211  1  223455689999999999999887653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.14  E-value=4.9e-10  Score=112.67  Aligned_cols=104  Identities=15%  Similarity=0.162  Sum_probs=82.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc--cCcCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN--VSSALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~--l~~~l~~fD~V  197 (318)
                      .++++|||||||+ |..+..++++   +.+|+|||+++++++.+++...    ...+++|+++|+.+  ++...++||+|
T Consensus        36 ~~~~~vLDlGcG~-G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~----~~~~i~~~~~d~~~~~~~~~~~~fD~I  107 (475)
T PLN02336         36 YEGKSVLELGAGI-GRFTGELAKK---AGQVIALDFIESVIKKNESING----HYKNVKFMCADVTSPDLNISDGSVDLI  107 (475)
T ss_pred             cCCCEEEEeCCCc-CHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhc----cCCceEEEEecccccccCCCCCCEEEE
Confidence            4567999999996 6666778874   5699999999999998876432    34689999999963  44455689999


Q ss_pred             Eecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +..... .++..+..++++++++.|||||.+++++
T Consensus       108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            976433 4455567899999999999999999976

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.13  E-value=6.5e-10  Score=111.52  Aligned_cols=108  Identities=18%  Similarity=0.170  Sum_probs=84.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|||+||||++.| +.+|+....+++|+++|+|+.+++.+++.+++ .|+ .+++++++|+.+++ ....||.|++
T Consensus       249 ~~g~~VLDlgaG~G~kt-~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~-~g~-~~v~~~~~Da~~~~-~~~~fD~Vl~  324 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKS-TFMAELMQNRGQITAVDRYPQKLEKIRSHASA-LGI-TIIETIEGDARSFS-PEEQPDAILL  324 (445)
T ss_pred             CCCCEEEEECCCCCHHH-HHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-hCC-CeEEEEeCcccccc-cCCCCCEEEE
Confidence            56789999999987666 45666443467999999999999999999998 787 47999999998875 3347999998


Q ss_pred             cccc---CC-----------Ch-------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV---GM-----------DK-------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv---gm-----------~~-------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++-.   |+           +.       ....+++.++++.|||||+|++..
T Consensus       325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst  377 (445)
T PRK14904        325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT  377 (445)
T ss_pred             cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            7532   11           00       123469999999999999999965

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.12  E-value=8.9e-10  Score=104.17  Aligned_cols=107  Identities=21%  Similarity=0.305  Sum_probs=83.9

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec--
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA--  200 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a--  200 (318)
                      .+|||+|||. |.-++.+|+. .++++|+++|+|+++++.|+++++. .++.++++|+++|..+.. ...+||+|+..  
T Consensus       116 ~~vLDlG~Gs-G~i~l~la~~-~~~~~v~avDis~~al~~a~~n~~~-~~~~~~v~~~~~d~~~~~-~~~~fDlIvsNPP  191 (284)
T TIGR00536       116 LHILDLGTGS-GCIALALAYE-FPNAEVIAVDISPDALAVAEENAEK-NQLEHRVEFIQSNLFEPL-AGQKIDIIVSNPP  191 (284)
T ss_pred             CEEEEEeccH-hHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEECchhccC-cCCCccEEEECCC
Confidence            7999999996 6666788875 4789999999999999999999988 788778999999997632 22379998853  


Q ss_pred             --------------------cccCC-C-hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          201 --------------------ALVGM-D-KDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       201 --------------------alvgm-~-~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                                          |+.+- + .....++++++.+.|+|||.+++-.++
T Consensus       192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~  246 (284)
T TIGR00536       192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN  246 (284)
T ss_pred             CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence                                01100 0 125678999999999999999987653

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.12  E-value=8.1e-10  Score=110.28  Aligned_cols=108  Identities=14%  Similarity=0.142  Sum_probs=83.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--ALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l~~fD~  196 (318)
                      +.++.+|||+||||++.|. .+++.. ++++|+++|+|+++++.+++.+++ .|+.  ++++++|+.+++.  ..++||.
T Consensus       242 ~~~g~~VLDlgaG~G~~t~-~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~-~g~~--~~~~~~D~~~~~~~~~~~~fD~  316 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTA-HILELA-PQAQVVALDIDAQRLERVRENLQR-LGLK--ATVIVGDARDPAQWWDGQPFDR  316 (427)
T ss_pred             CCCCCEEEEeCCCCChHHH-HHHHHc-CCCEEEEEeCCHHHHHHHHHHHHH-cCCC--eEEEEcCcccchhhcccCCCCE
Confidence            3678999999999977775 566543 568999999999999999999988 6663  7899999987642  2347999


Q ss_pred             EEecccc---CC-----------Ch-------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALV---GM-----------DK-------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalv---gm-----------~~-------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |++++-.   |.           ..       ....+++++..+.|||||.+++-.
T Consensus       317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            9976632   10           11       123579999999999999998765

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.12  E-value=8.3e-10  Score=98.20  Aligned_cols=108  Identities=19%  Similarity=0.289  Sum_probs=86.5

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE--
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF--  198 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~--  198 (318)
                      ...||||+|||. |.-..-||+.-+ ....+|||.|++|+++|+.++++ -|.++.|+|.+.|+.+-.+..++||+|.  
T Consensus        67 ~A~~VlDLGtGN-G~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~-~~~~n~I~f~q~DI~~~~~~~~qfdlvlDK  143 (227)
T KOG1271|consen   67 QADRVLDLGTGN-GHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAER-DGFSNEIRFQQLDITDPDFLSGQFDLVLDK  143 (227)
T ss_pred             cccceeeccCCc-hHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHh-cCCCcceeEEEeeccCCcccccceeEEeec
Confidence            334999999995 777788887543 33489999999999999999998 8999999999999998666666999998  


Q ss_pred             --ecc--ccCCChhHH-HHHHHHHHHhccCCeEEEEEc
Q 021008          199 --LAA--LVGMDKDEK-IRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 --~aa--lvgm~~~~k-~~vl~~l~r~LkpGg~lv~r~  231 (318)
                        .+|  |.++....| .-++..+.+.|+|||++++.+
T Consensus       144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS  181 (227)
T KOG1271|consen  144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS  181 (227)
T ss_pred             CceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence              444  334433333 457788899999999999987

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.12  E-value=1e-09  Score=83.42  Aligned_cols=102  Identities=18%  Similarity=0.242  Sum_probs=80.5

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEEEeccc
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVVFLAAL  202 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V~~aal  202 (318)
                      +|+++|||.+ ..+..+++  .++.+++++|+++.+++.+++....  +...+++|+.+|..+... ..++||+|+....
T Consensus         1 ~ildig~G~G-~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTG-ALALALAS--GPGARVTGVDISPVALELARKAAAA--LLADNVEVLKGDAEELPPEADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCcc-HHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhc--ccccceEEEEcChhhhccccCCceEEEEEccc
Confidence            5899999974 55556665  3688999999999999999864443  345789999999998754 4458999998775


Q ss_pred             cCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          203 VGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      .....+...++++.+.+.++|||.+++.
T Consensus        76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            5321468899999999999999999874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.11  E-value=5.2e-10  Score=104.13  Aligned_cols=109  Identities=19%  Similarity=0.170  Sum_probs=85.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC--CccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK--DYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~--~fD~V  197 (318)
                      ....||||+||| -|.-++.+|++. +.++|++||+++++.+.|++.++. .++.+||+++++|+.+......  +||+|
T Consensus        43 ~~~~~IlDlGaG-~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~~~~fD~I  119 (248)
T COG4123          43 PKKGRILDLGAG-NGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALVFASFDLI  119 (248)
T ss_pred             ccCCeEEEecCC-cCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhcccccccCEE
Confidence            457999999999 578889999875 569999999999999999999998 8999999999999998755443  59998


Q ss_pred             Eec-----ccc------------CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLA-----ALV------------GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~a-----alv------------gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.-     .-.            ++-...=..+++-..+.|||||.+.+-.
T Consensus       120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~  170 (248)
T COG4123         120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH  170 (248)
T ss_pred             EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence            721     100            0001123567788899999999987644

>PRK14968 putative methyltransferase; Provisional

Probab=99.08  E-value=1.9e-09  Score=93.97  Aligned_cols=106  Identities=18%  Similarity=0.281  Sum_probs=80.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCC-eEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTR-MFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~r-i~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++++||++|||. |..++.++++   +++|+++|+|+++++.+++.+.. .++.++ +.++.+|..+... ...||+|+
T Consensus        22 ~~~~~vLd~G~G~-G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~~d~~~~~~-~~~~d~vi   95 (188)
T PRK14968         22 KKGDRVLEVGTGS-GIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKL-NNIRNNGVEVIRSDLFEPFR-GDKFDVIL   95 (188)
T ss_pred             cCCCEEEEEcccc-CHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHH-cCCCCcceEEEecccccccc-ccCceEEE
Confidence            5778999999995 6777788863   89999999999999999999887 666544 9999999877432 23799998


Q ss_pred             eccccCC--------------------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGM--------------------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm--------------------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...-...                    ......++++++.+.|+|||.+++-.
T Consensus        96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~  148 (188)
T PRK14968         96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ  148 (188)
T ss_pred             ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            5431100                    01224568999999999999887643

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.08  E-value=1.3e-09  Score=105.15  Aligned_cols=108  Identities=10%  Similarity=0.046  Sum_probs=85.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|||+|||+++++ +-.+.   .|+.|+|+|+|+.+++.|+++++. .|+.+ +.+.++|+.+++...+.||+|++
T Consensus       181 ~~g~~vLDp~cGtG~~l-ieaa~---~~~~v~g~Di~~~~~~~a~~nl~~-~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~  254 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFL-IEAGL---MGAKVIGCDIDWKMVAGARINLEH-YGIED-FFVKRGDATKLPLSSESVDAIAT  254 (329)
T ss_pred             CCcCEEEECCCCCCHHH-HHHHH---hCCeEEEEcCCHHHHHHHHHHHHH-hCCCC-CeEEecchhcCCcccCCCCEEEE
Confidence            67789999999976554 44443   489999999999999999999988 88866 99999999998766568999998


Q ss_pred             ccccCC------C-h-hHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          200 AALVGM------D-K-DEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       200 aalvgm------~-~-~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      +.-.|.      . . .-..+++++++++|+|||.+++-..+
T Consensus       255 dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~  296 (329)
T TIGR01177       255 DPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT  296 (329)
T ss_pred             CCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence            631111      1 1 23578999999999999998876643

This family is found exclusively in the Archaea.

>PLN02823 spermine synthase

Probab=99.07  E-value=1e-09  Score=106.54  Aligned_cols=109  Identities=13%  Similarity=0.120  Sum_probs=83.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC---CCCCeEEEEccccccCcCC-CCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD---LSTRMFFHTTDIMNVSSAL-KDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g---l~~ri~f~~gDa~~l~~~l-~~fD  195 (318)
                      ..|++||.||+| .|.++..+.+ |.+..+|+.||||+++++.|++.+.. .+   ...|++++.+|+.+..... ++||
T Consensus       102 ~~pk~VLiiGgG-~G~~~re~l~-~~~~~~v~~VEiD~~vv~lar~~~~~-~~~~~~dprv~v~~~Da~~~L~~~~~~yD  178 (336)
T PLN02823        102 PNPKTVFIMGGG-EGSTAREVLR-HKTVEKVVMCDIDQEVVDFCRKHLTV-NREAFCDKRLELIINDARAELEKRDEKFD  178 (336)
T ss_pred             CCCCEEEEECCC-chHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhccc-ccccccCCceEEEEChhHHHHhhCCCCcc
Confidence            578999999999 5666666664 44567899999999999999999864 21   2579999999999854333 4899


Q ss_pred             EEEeccccCCCh--h---HHHHHHH-HHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDK--D---EKIRVID-HLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~--~---~k~~vl~-~l~r~LkpGg~lv~r~  231 (318)
                      +|+++..-+...  .   -..++++ .+.++|+|||++++..
T Consensus       179 vIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        179 VIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             EEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            999986432110  1   1356887 8999999999998864

>PRK14967 putative methyltransferase; Provisional

Probab=99.07  E-value=2.4e-09  Score=97.48  Aligned_cols=104  Identities=16%  Similarity=0.149  Sum_probs=77.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||+|||+ |.-++.+|+.  ...+|+++|+|+.+++.|++++.. .++  +++++++|..+.. ..++||+|+.
T Consensus        35 ~~~~~vLDlGcG~-G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~-~~~--~~~~~~~d~~~~~-~~~~fD~Vi~  107 (223)
T PRK14967         35 GPGRRVLDLCTGS-GALAVAAAAA--GAGSVTAVDISRRAVRSARLNALL-AGV--DVDVRRGDWARAV-EFRPFDVVVS  107 (223)
T ss_pred             CCCCeEEEecCCH-HHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHH-hCC--eeEEEECchhhhc-cCCCeeEEEE
Confidence            5678999999997 6666778763  234999999999999999999887 454  5899999987742 3358999997


Q ss_pred             cc-ccCCC-------------------hhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AA-LVGMD-------------------KDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aa-lvgm~-------------------~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      .. .+...                   ...-.++++++.+.|||||++++-
T Consensus       108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            52 11100                   011356888899999999999863

>TIGR00417 speE spermidine synthase

Probab=99.06  E-value=1.5e-09  Score=102.07  Aligned_cols=111  Identities=14%  Similarity=0.152  Sum_probs=82.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC-C-CCCeEEEEccccccCcC-CCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD-L-STRMFFHTTDIMNVSSA-LKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g-l-~~ri~f~~gDa~~l~~~-l~~fD~  196 (318)
                      ..|++||+||||. |.++..+++ +.+..+|+++|+|+++++.|++.+....+ + ..+++++.+|+.+.... .+.||+
T Consensus        71 ~~p~~VL~iG~G~-G~~~~~ll~-~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv  148 (270)
T TIGR00417        71 PNPKHVLVIGGGD-GGVLREVLK-HKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV  148 (270)
T ss_pred             CCCCEEEEEcCCc-hHHHHHHHh-CCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence            5678999999996 445555554 33567899999999999999998765111 1 36899999999763222 348999


Q ss_pred             EEeccccCC-ChhH--HHHHHHHHHHhccCCeEEEEEcC
Q 021008          197 VFLAALVGM-DKDE--KIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       197 V~~aalvgm-~~~~--k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+++...+. +...  ..++++.+++.|+|||++++...
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~  187 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE  187 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence            998875321 1112  46889999999999999998754

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.05  E-value=9.9e-10  Score=102.43  Aligned_cols=106  Identities=23%  Similarity=0.271  Sum_probs=84.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CC-CCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--AL-KDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l-~~fD  195 (318)
                      ..+|+||++-|+|.+.+| ..||+...|..+|+.+|+.++..+.|++.++. .|+.+++++.+.|+.+--+  +. ..||
T Consensus        38 i~pG~~VlEaGtGSG~lt-~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~D  115 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLT-HALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFD  115 (247)
T ss_dssp             --TT-EEEEE--TTSHHH-HHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEE
T ss_pred             CCCCCEEEEecCCcHHHH-HHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCccc
Confidence            489999999999987777 46777667889999999999999999999999 9999999999999975323  22 4799


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhc-cCCeEEEEEcC
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYM-APGALLMLRSA  232 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~L-kpGg~lv~r~~  232 (318)
                      .||++-      ++...++.++.+.| +|||++++-++
T Consensus       116 avfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP  147 (247)
T PF08704_consen  116 AVFLDL------PDPWEAIPHAKRALKKPGGRICCFSP  147 (247)
T ss_dssp             EEEEES------SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred             EEEEeC------CCHHHHHHHHHHHHhcCCceEEEECC
Confidence            999885      35567899999999 99999998773

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.04  E-value=1.6e-09  Score=110.48  Aligned_cols=107  Identities=16%  Similarity=0.192  Sum_probs=83.4

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      ++.+|||||||+ |.-++.+|++ .++++|+++|+|+++++.|++++.. .|+.++++|+.+|..+.. ....||+|+..
T Consensus       138 ~~~~VLDlG~Gs-G~iai~la~~-~p~~~v~avDis~~al~~A~~N~~~-~~l~~~v~~~~~D~~~~~-~~~~fDlIvsN  213 (506)
T PRK01544        138 KFLNILELGTGS-GCIAISLLCE-LPNANVIATDISLDAIEVAKSNAIK-YEVTDRIQIIHSNWFENI-EKQKFDFIVSN  213 (506)
T ss_pred             CCCEEEEccCch-hHHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHH-cCCccceeeeecchhhhC-cCCCccEEEEC
Confidence            457999999996 6666778866 4899999999999999999999987 788889999999987532 22479998851


Q ss_pred             -----------------------cccCC-C-hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          201 -----------------------ALVGM-D-KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       201 -----------------------alvgm-~-~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                                             |+.+- + .....++++++.++|+|||.+++-.
T Consensus       214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi  269 (506)
T PRK01544        214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI  269 (506)
T ss_pred             CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence                                   12211 0 1345678889999999999998854

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.03  E-value=2.1e-09  Score=97.54  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=81.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--------cCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--------SAL  191 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--------~~l  191 (318)
                      .++.+||||||||+.++ ..++++..++.+|++||+++-         ..   . .+++|+++|+.+.+        ...
T Consensus        50 ~~~~~VLDlG~GtG~~t-~~l~~~~~~~~~V~aVDi~~~---------~~---~-~~v~~i~~D~~~~~~~~~i~~~~~~  115 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWS-QYAVTQIGDKGRVIACDILPM---------DP---I-VGVDFLQGDFRDELVLKALLERVGD  115 (209)
T ss_pred             CCCCEEEEEcccCCHHH-HHHHHHcCCCceEEEEecccc---------cC---C-CCcEEEecCCCChHHHHHHHHHhCC
Confidence            67889999999987666 456665445679999999981         11   2 34899999999853        334


Q ss_pred             CCccEEEecccc---CCChhH-------HHHHHHHHHHhccCCeEEEEEcCCCcc--cccccCCCccccC-CcEEEEEEc
Q 021008          192 KDYEVVFLAALV---GMDKDE-------KIRVIDHLAKYMAPGALLMLRSAHGAR--AFLYPVVDPSDLL-GFEVLSVFH  258 (318)
Q Consensus       192 ~~fD~V~~aalv---gm~~~~-------k~~vl~~l~r~LkpGg~lv~r~~~g~r--~~lYP~v~~~~l~-gf~~~~~~~  258 (318)
                      +.||+|+.+...   +.+..+       -..+++++.++|+|||.+++....+-+  .++      ..++ .|....+..
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l------~~l~~~f~~v~~~K  189 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL------REIRSLFTKVKVRK  189 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH------HHHHhCceEEEEEC
Confidence            589999965311   111001       146899999999999999996533321  222      2233 677777776


Q ss_pred             Cch
Q 021008          259 PTD  261 (318)
Q Consensus       259 p~~  261 (318)
                      |..
T Consensus       190 p~s  192 (209)
T PRK11188        190 PDS  192 (209)
T ss_pred             Ccc
Confidence            643

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.03  E-value=2e-09  Score=96.92  Aligned_cols=105  Identities=18%  Similarity=0.233  Sum_probs=82.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~  198 (318)
                      ..+.+||++|||+ |..+..+++   .+..++++|+++.+++.+++.... .+. .+++|.++|+.+.+... +.||+|+
T Consensus        44 ~~~~~vLdlG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~-~~~-~~~~~~~~d~~~~~~~~~~~~D~i~  117 (224)
T TIGR01983        44 LFGLRVLDVGCGG-GLLSEPLAR---LGANVTGIDASEENIEVAKLHAKK-DPL-LKIEYRCTSVEDLAEKGAKSFDVVT  117 (224)
T ss_pred             CCCCeEEEECCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHH-cCC-CceEEEeCCHHHhhcCCCCCccEEE
Confidence            3578999999997 555566775   267899999999999999988776 443 26899999998876543 5899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....++ ...+...+++++.+.|+|||.+++..
T Consensus       118 ~~~~l~-~~~~~~~~l~~~~~~L~~gG~l~i~~  149 (224)
T TIGR01983       118 CMEVLE-HVPDPQAFIRACAQLLKPGGILFFST  149 (224)
T ss_pred             ehhHHH-hCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            765443 22466789999999999999988765

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.03  E-value=3e-09  Score=101.03  Aligned_cols=110  Identities=13%  Similarity=0.166  Sum_probs=86.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC-CC-CCCeEEEEccccccCcCCC-CccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP-DL-STRMFFHTTDIMNVSSALK-DYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~-gl-~~ri~f~~gDa~~l~~~l~-~fD~  196 (318)
                      +.|+|||.||.|.+ .|+..+. +|.+-.+++.||||++.+++||+.+.... +. ..|++++.+|+.+...... .||+
T Consensus        75 ~~pk~VLiiGgGdG-~tlRevl-kh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv  152 (282)
T COG0421          75 PNPKRVLIIGGGDG-GTLREVL-KHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV  152 (282)
T ss_pred             CCCCeEEEECCCcc-HHHHHHH-hcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence            56689999999965 4444555 46678999999999999999999988622 22 4899999999998765555 6999


Q ss_pred             EEeccccCC---ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGM---DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm---~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |++++.-+-   ..---..+++.+++.|+|+|+++...
T Consensus       153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            999986431   00124789999999999999999994

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.02  E-value=3.8e-09  Score=102.81  Aligned_cols=105  Identities=14%  Similarity=0.192  Sum_probs=80.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ....+|||+|||. |.-++.++++ .|+.+|+++|+|+.|++.|++.++. .++.  .+++.+|+.+.  ..+.||+|+.
T Consensus       195 ~~~g~VLDlGCG~-G~ls~~la~~-~p~~~v~~vDis~~Al~~A~~nl~~-n~l~--~~~~~~D~~~~--~~~~fDlIvs  267 (342)
T PRK09489        195 HTKGKVLDVGCGA-GVLSAVLARH-SPKIRLTLSDVSAAALESSRATLAA-NGLE--GEVFASNVFSD--IKGRFDMIIS  267 (342)
T ss_pred             cCCCeEEEeccCc-CHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH-cCCC--CEEEEcccccc--cCCCccEEEE
Confidence            3456899999996 5556677765 4788999999999999999999887 5553  57788888653  2348999996


Q ss_pred             cccc--CC--ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV--GM--DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv--gm--~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .--.  ++  +.....++++++.++|+|||.+.+-.
T Consensus       268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa  303 (342)
T PRK09489        268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (342)
T ss_pred             CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence            5322  11  23567899999999999999886643

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.01  E-value=3.9e-09  Score=104.66  Aligned_cols=109  Identities=13%  Similarity=0.074  Sum_probs=81.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC-CCeEEEEccccccCcC----CCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS-TRMFFHTTDIMNVSSA----LKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~-~ri~f~~gDa~~l~~~----l~~f  194 (318)
                      .++++|||+|||+++++ +..+..  ...+|++||+|+.+++.|+++++. .|++ ++++|+++|+.+....    ...|
T Consensus       219 ~~g~rVLDlfsgtG~~~-l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~-Ngl~~~~v~~i~~D~~~~l~~~~~~~~~f  294 (396)
T PRK15128        219 VENKRVLNCFSYTGGFA-VSALMG--GCSQVVSVDTSQEALDIARQNVEL-NKLDLSKAEFVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_pred             cCCCeEEEeccCCCHHH-HHHHhC--CCCEEEEEECCHHHHHHHHHHHHH-cCCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence            46899999999987664 444431  234999999999999999999998 7886 5899999999885322    2379


Q ss_pred             cEEEeccccC-CCh-------hHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          195 EVVFLAALVG-MDK-------DEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       195 D~V~~aalvg-m~~-------~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+|+++---- -.+       ....+++....+.|+|||.|++-+-
T Consensus       295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9999874110 011       2345566677899999999998763

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.01  E-value=1.8e-09  Score=100.56  Aligned_cols=110  Identities=16%  Similarity=0.181  Sum_probs=81.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC--CCCCeEEEEccccccCc-CCC-Ccc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD--LSTRMFFHTTDIMNVSS-ALK-DYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g--l~~ri~f~~gDa~~l~~-~l~-~fD  195 (318)
                      +.|++||.||.|. |.++..+. +|.+-.+|+.|||||++++.|++.+....+  -+.|++++.+|+..... ..+ .||
T Consensus        75 ~~p~~VLiiGgG~-G~~~~ell-~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD  152 (246)
T PF01564_consen   75 PNPKRVLIIGGGD-GGTARELL-KHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD  152 (246)
T ss_dssp             SST-EEEEEESTT-SHHHHHHT-TSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred             CCcCceEEEcCCC-hhhhhhhh-hcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence            6799999999995 55555565 454467999999999999999999875111  25799999999987433 333 699


Q ss_pred             EEEeccccCCChh---HHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKD---EKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~---~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+++..-+....   -..++++.+.++|+|||++++..
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            9999876522112   24689999999999999999986

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.01  E-value=8.7e-10  Score=99.76  Aligned_cols=137  Identities=15%  Similarity=0.167  Sum_probs=92.3

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeE-EEEccccccC-cCCCCccEEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMF-FHTTDIMNVS-SALKDYEVVF  198 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~-f~~gDa~~l~-~~l~~fD~V~  198 (318)
                      ..-.||+||||+++-  +-+-. .-|+.+||++|.++.+-+.|.+-+++ . ...++. |+.|++.+++ -.+++||.|+
T Consensus        76 ~K~~vLEvgcGtG~N--fkfy~-~~p~~svt~lDpn~~mee~~~ks~~E-~-k~~~~~~fvva~ge~l~~l~d~s~DtVV  150 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGAN--FKFYP-WKPINSVTCLDPNEKMEEIADKSAAE-K-KPLQVERFVVADGENLPQLADGSYDTVV  150 (252)
T ss_pred             CccceEEecccCCCC--ccccc-CCCCceEEEeCCcHHHHHHHHHHHhh-c-cCcceEEEEeechhcCcccccCCeeeEE
Confidence            334679999997532  21111 12799999999999999999998887 3 445666 9999999997 2445999877


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc-CCCccc----ccccCCCcc-ccCCcEEEEEEcCchhHH
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS-AHGARA----FLYPVVDPS-DLLGFEVLSVFHPTDEVI  264 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~-~~g~r~----~lYP~v~~~-~l~gf~~~~~~~p~~~Vv  264 (318)
                      -. ++-...++..+.|+++.|+|||||++++-+ ..|-..    ++--+.+|. .+.+| -+.|.+.++++.
T Consensus       151 ~T-lvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~d-GC~ltrd~~e~L  220 (252)
T KOG4300|consen  151 CT-LVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESD-GCVLTRDTGELL  220 (252)
T ss_pred             EE-EEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheecc-ceEEehhHHHHh
Confidence            43 232245788999999999999999998866 222222    221222331 12234 356677666654

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.00  E-value=6.5e-09  Score=100.19  Aligned_cols=101  Identities=20%  Similarity=0.206  Sum_probs=75.1

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC----CCCeEEEEccccccCcCCCCccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL----STRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl----~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      ++.+|||||||+ |..++.+++   .|.+|+|+|+|+.+++.|++..+. .+.    ..+++|.++|..++   .+.||+
T Consensus       144 ~~~~VLDlGcGt-G~~a~~la~---~g~~V~gvD~S~~ml~~A~~~~~~-~~~~~~~~~~~~f~~~Dl~~l---~~~fD~  215 (315)
T PLN02585        144 AGVTVCDAGCGT-GSLAIPLAL---EGAIVSASDISAAMVAEAERRAKE-ALAALPPEVLPKFEANDLESL---SGKYDT  215 (315)
T ss_pred             CCCEEEEecCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHh-cccccccccceEEEEcchhhc---CCCcCE
Confidence            578999999996 666678886   388999999999999999998876 322    35789999997664   258998


Q ss_pred             EEec-cccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          197 VFLA-ALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       197 V~~a-alvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      |+.. .+.+++.+...++++.+.+ +.+|+.++.-
T Consensus       216 Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~  249 (315)
T PLN02585        216 VTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISF  249 (315)
T ss_pred             EEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEe
Confidence            8854 3445554445567777775 5677766543

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.00  E-value=2e-09  Score=95.33  Aligned_cols=98  Identities=14%  Similarity=0.131  Sum_probs=70.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--------cCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--------SAL  191 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--------~~l  191 (318)
                      .++.+|||||||+++++.. +++++.++++|+++|+++.+        ..     .+++++++|+.+..        ...
T Consensus        31 ~~g~~VLDiG~GtG~~~~~-l~~~~~~~~~v~~vDis~~~--------~~-----~~i~~~~~d~~~~~~~~~l~~~~~~   96 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQV-AVEQVGGKGRVIAVDLQPMK--------PI-----ENVDFIRGDFTDEEVLNKIRERVGD   96 (188)
T ss_pred             CCCCEEEEecCCCCHHHHH-HHHHhCCCceEEEEeccccc--------cC-----CCceEEEeeCCChhHHHHHHHHhCC
Confidence            7889999999999887764 45454456799999999964        11     45789999987632        223


Q ss_pred             CCccEEEeccc---cCC---C----hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 KDYEVVFLAAL---VGM---D----KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aal---vgm---~----~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++||+|+.+..   .|.   +    .+...+++..+++.|+|||++++-.
T Consensus        97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438        97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            47999997531   111   1    1234689999999999999998853

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.99  E-value=5.5e-09  Score=97.10  Aligned_cols=107  Identities=21%  Similarity=0.319  Sum_probs=81.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||+|||+ |.-++.+++. .++++|+|+|+|+.+++.|++.+..  +...+++|+.+|..+.. ..++||+|+.
T Consensus       107 ~~~~~vLDiG~Gs-G~~~~~la~~-~~~~~v~~iDis~~~l~~a~~n~~~--~~~~~i~~~~~d~~~~~-~~~~fD~Iv~  181 (275)
T PRK09328        107 KEPLRVLDLGTGS-GAIALALAKE-RPDAEVTAVDISPEALAVARRNAKH--GLGARVEFLQGDWFEPL-PGGRFDLIVS  181 (275)
T ss_pred             cCCCEEEEEcCcH-HHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHh--CCCCcEEEEEccccCcC-CCCceeEEEE
Confidence            5678999999996 6666788875 4789999999999999999999872  34578999999997632 2358999985


Q ss_pred             cc-cc------CCC------------------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AA-LV------GMD------------------KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aa-lv------gm~------------------~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .- .+      .++                  .....++++++.+.|+|||.+++..
T Consensus       182 npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        182 NPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             CCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            31 00      001                  1234678899999999999999854

>PRK03612 spermidine synthase; Provisional

Probab=98.98  E-value=2.3e-09  Score=109.64  Aligned_cols=110  Identities=17%  Similarity=0.224  Sum_probs=81.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHH--hhcC--CCC-CCCeEEEEccccccCc-CCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSL--VSSD--PDL-STRMFFHTTDIMNVSS-ALK  192 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~--~~~~--~gl-~~ri~f~~gDa~~l~~-~l~  192 (318)
                      ++++|||+||+|. |.++..+++ | ++ .+|+.||+|+++++.|++.  +...  ..+ +.|++++.+|+.+... ..+
T Consensus       296 ~~~~rVL~IG~G~-G~~~~~ll~-~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~  372 (521)
T PRK03612        296 ARPRRVLVLGGGD-GLALREVLK-Y-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAE  372 (521)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHh-C-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCC
Confidence            6789999999995 666666665 4 55 8999999999999999984  2220  112 3689999999987432 234


Q ss_pred             CccEEEeccccCCCh----hHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          193 DYEVVFLAALVGMDK----DEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       193 ~fD~V~~aalvgm~~----~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +||+|+++.......    --..++++.+.++|||||++++...
T Consensus       373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence            899999885322111    1134689999999999999998764

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.97  E-value=4.1e-09  Score=100.68  Aligned_cols=114  Identities=18%  Similarity=0.239  Sum_probs=84.1

Q ss_pred             HHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE
Q 021008          103 YIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT  181 (318)
Q Consensus       103 y~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~  181 (318)
                      .+.-+++-.+.+.+. ..++++|||||||. |.-++..++   .|+ +|+++|+||.+++.|+++++. -|+++++.+. 
T Consensus       144 ~H~TT~lcl~~l~~~-~~~g~~vLDvG~GS-GILaiaA~k---lGA~~v~a~DiDp~Av~~a~~N~~~-N~~~~~~~v~-  216 (295)
T PF06325_consen  144 HHPTTRLCLELLEKY-VKPGKRVLDVGCGS-GILAIAAAK---LGAKKVVAIDIDPLAVEAARENAEL-NGVEDRIEVS-  216 (295)
T ss_dssp             HCHHHHHHHHHHHHH-SSTTSEEEEES-TT-SHHHHHHHH---TTBSEEEEEESSCHHHHHHHHHHHH-TT-TTCEEES-
T ss_pred             CCHHHHHHHHHHHHh-ccCCCEEEEeCCcH-HHHHHHHHH---cCCCeEEEecCCHHHHHHHHHHHHH-cCCCeeEEEE-
Confidence            344666766666655 37789999999995 888887665   366 799999999999999999998 8898888764 


Q ss_pred             ccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          182 TDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       182 gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                       ...+.+.  ..||+|+.--+    ...=..++..+.++|+|||.+++.
T Consensus       217 -~~~~~~~--~~~dlvvANI~----~~vL~~l~~~~~~~l~~~G~lIlS  258 (295)
T PF06325_consen  217 -LSEDLVE--GKFDLVVANIL----ADVLLELAPDIASLLKPGGYLILS  258 (295)
T ss_dssp             -CTSCTCC--S-EEEEEEES-----HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred             -Eeccccc--ccCCEEEECCC----HHHHHHHHHHHHHhhCCCCEEEEc
Confidence             2233332  58999984432    245567888899999999999984

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.96  E-value=3.1e-09  Score=112.33  Aligned_cols=107  Identities=12%  Similarity=0.152  Sum_probs=83.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCC-CCeEEEEccccccCcCC-CCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLS-TRMFFHTTDIMNVSSAL-KDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~-~ri~f~~gDa~~l~~~l-~~fD~  196 (318)
                      .++++||++|||.+++ ++.+|+.   |+ +|++||+|+.++++|+++++. .|+. .+++|+++|+.+..... ..||+
T Consensus       537 ~~g~rVLDlf~gtG~~-sl~aa~~---Ga~~V~~vD~s~~al~~a~~N~~~-ng~~~~~v~~i~~D~~~~l~~~~~~fDl  611 (702)
T PRK11783        537 AKGKDFLNLFAYTGTA-SVHAALG---GAKSTTTVDMSNTYLEWAERNFAL-NGLSGRQHRLIQADCLAWLKEAREQFDL  611 (702)
T ss_pred             cCCCeEEEcCCCCCHH-HHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHH-hCCCccceEEEEccHHHHHHHcCCCcCE
Confidence            4689999999997554 5677763   55 699999999999999999987 7786 68999999998753222 38999


Q ss_pred             EEecc--ccC---C-----ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAA--LVG---M-----DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aa--lvg---m-----~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+++-  +..   +     ......+++..+.++|+|||.+++-+
T Consensus       612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~  656 (702)
T PRK11783        612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN  656 (702)
T ss_pred             EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            99863  110   0     12355778999999999999998765

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.96  E-value=7.4e-09  Score=102.97  Aligned_cols=108  Identities=14%  Similarity=0.205  Sum_probs=79.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V~  198 (318)
                      .++.+|||||||+ |.-++.+|++ .++++|+++|+|+++++.|+++++. .+  .+++|+++|..+... ..++||+|+
T Consensus       250 ~~~~rVLDLGcGS-G~IaiaLA~~-~p~a~VtAVDiS~~ALe~AreNa~~-~g--~rV~fi~gDl~e~~l~~~~~FDLIV  324 (423)
T PRK14966        250 PENGRVWDLGTGS-GAVAVTVALE-RPDAFVRASDISPPALETARKNAAD-LG--ARVEFAHGSWFDTDMPSEGKWDIIV  324 (423)
T ss_pred             CCCCEEEEEeChh-hHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH-cC--CcEEEEEcchhccccccCCCccEEE
Confidence            4557999999996 5555777765 3899999999999999999999987 44  489999999875322 224799998


Q ss_pred             ecc----------------------ccCCC--hhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAA----------------------LVGMD--KDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aa----------------------lvgm~--~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ..-                      +.+..  .+...++++++.++|+|||.+++-.+
T Consensus       325 SNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG  382 (423)
T PRK14966        325 SNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG  382 (423)
T ss_pred             ECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            521                      11100  12345788888899999999887553

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.96  E-value=2.1e-09  Score=93.42  Aligned_cols=80  Identities=10%  Similarity=0.150  Sum_probs=64.8

Q ss_pred             EEEeCChHHHHHHHHHhhc-CCCCCCCeEEEEccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          151 DNYDIDPSANSKALSLVSS-DPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       151 ~gvDid~~ai~~Ar~~~~~-~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +|+|+|+++++.|++..+. ..+...+++|+++|+.++|...+.||+|+....+. ...++.+++++++|+|||||.+++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~-~~~d~~~~l~ei~rvLkpGG~l~i   79 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLR-NVVDRLRAMKEMYRVLKPGSRVSI   79 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhh-cCCCHHHHHHHHHHHcCcCeEEEE
Confidence            5899999999999876553 12334689999999999998777999998654332 236889999999999999999987


Q ss_pred             Ec
Q 021008          230 RS  231 (318)
Q Consensus       230 r~  231 (318)
                      -+
T Consensus        80 ~d   81 (160)
T PLN02232         80 LD   81 (160)
T ss_pred             EE
Confidence            76

>PTZ00146 fibrillarin; Provisional

Probab=98.95  E-value=9.4e-09  Score=97.92  Aligned_cols=146  Identities=10%  Similarity=0.086  Sum_probs=91.9

Q ss_pred             HHHHHHHhhcCCCCcc-cccCCcChhhHH-HhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEe
Q 021008           77 ESHFSSILASFENPIA-NLNIFPYYSNYI-KLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYD  154 (318)
Q Consensus        77 E~~~A~~l~~~~~P~~-~L~~fpY~~ny~-~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvD  154 (318)
                      |..|.+++.+.+++-. .=.-+.-|+.|. +|...-+..+......++.+|||+|||| |.++..+|+...+..+|++||
T Consensus        86 ~~vygek~~~~~~~~~~~~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~-G~~t~~lAdiVG~~G~VyAVD  164 (293)
T PTZ00146         86 ESVYGEKRISVEDAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAAS-GTTVSHVSDLVGPEGVVYAVE  164 (293)
T ss_pred             cccccceEEeeccCCCCCcceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEE
Confidence            4556666655432211 001244454443 3333333333333247889999999997 566677887654457899999


Q ss_pred             CChHHHHHHHHHhhcCCCCCCCeEEEEcccccc---CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          155 IDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV---SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       155 id~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l---~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +++.+.+...+.+..    ..+|.++.+|+.+.   ......||+||.+..   +..+...++.++.+.|||||.|++.
T Consensus       165 ~s~r~~~dLl~~ak~----r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        165 FSHRSGRDLTNMAKK----RPNIVPIIEDARYPQKYRMLVPMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CcHHHHHHHHHHhhh----cCCCEEEECCccChhhhhcccCCCCEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEE
Confidence            998766544444433    15789999998642   112347999998763   2334455667899999999999983

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.92  E-value=1.2e-08  Score=95.07  Aligned_cols=130  Identities=19%  Similarity=0.176  Sum_probs=86.5

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc-CcCC-CCccEEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV-SSAL-KDYEVVF  198 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l-~~~l-~~fD~V~  198 (318)
                      .+.+|||+|||. |.-++.+++. .++.+|+++|+|+++++.|+++++. .+    ++|+++|+.+. +... +.||+|+
T Consensus        86 ~~~~vLDlg~Gs-G~i~l~la~~-~~~~~v~~vDis~~al~~A~~N~~~-~~----~~~~~~D~~~~l~~~~~~~fDlVv  158 (251)
T TIGR03704        86 GTLVVVDLCCGS-GAVGAALAAA-LDGIELHAADIDPAAVRCARRNLAD-AG----GTVHEGDLYDALPTALRGRVDILA  158 (251)
T ss_pred             CCCEEEEecCch-HHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH-cC----CEEEEeechhhcchhcCCCEeEEE
Confidence            356999999996 5555677765 4788999999999999999999886 33    48999998763 2212 3799998


Q ss_pred             eccc-c------CCCh------------------hHHHHHHHHHHHhccCCeEEEEEcCCCccc-ccccCCCccccCCcE
Q 021008          199 LAAL-V------GMDK------------------DEKIRVIDHLAKYMAPGALLMLRSAHGARA-FLYPVVDPSDLLGFE  252 (318)
Q Consensus       199 ~aal-v------gm~~------------------~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~-~lYP~v~~~~l~gf~  252 (318)
                      ..-- +      .++.                  +-..++++...++|+|||.+++-....-.. ..    ..-.-.||+
T Consensus       159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~----~~l~~~g~~  234 (251)
T TIGR03704       159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAV----EAFARAGLI  234 (251)
T ss_pred             ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHH----HHHHHCCCC
Confidence            6531 1      0111                  113478888889999999998865322111 11    000112777


Q ss_pred             EEEEEcCch
Q 021008          253 VLSVFHPTD  261 (318)
Q Consensus       253 ~~~~~~p~~  261 (318)
                      .....|++-
T Consensus       235 ~~~~~~~~~  243 (251)
T TIGR03704       235 ARVASSEEL  243 (251)
T ss_pred             ceeeEcccc
Confidence            766666644

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.92  E-value=9.5e-09  Score=94.26  Aligned_cols=98  Identities=18%  Similarity=0.292  Sum_probs=79.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .+.++|+|||+|. |.-++.++++| |+.+++.+|. |++++.+++        .+||+|+.||..+   +...+|++++
T Consensus        99 ~~~~~vvDvGGG~-G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f~---~~P~~D~~~l  164 (241)
T PF00891_consen   99 SGFKTVVDVGGGS-GHFAIALARAY-PNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFFD---PLPVADVYLL  164 (241)
T ss_dssp             TTSSEEEEET-TT-SHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TTT---CCSSESEEEE
T ss_pred             cCccEEEeccCcc-hHHHHHHHHHC-CCCcceeecc-Hhhhhcccc--------ccccccccccHHh---hhccccceee
Confidence            6678999999996 55556777776 9999999999 999999988        4899999999983   2224999999


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCC--eEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPG--ALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpG--g~lv~r~  231 (318)
                      ...+ .++.++-.++|+++++.|+||  |+|++-+
T Consensus       165 ~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  165 RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            8866 457788899999999999999  9998876

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=1.1e-08  Score=97.72  Aligned_cols=117  Identities=16%  Similarity=0.202  Sum_probs=85.5

Q ss_pred             HHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc
Q 021008          104 IKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT  182 (318)
Q Consensus       104 ~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g  182 (318)
                      +.-+.+-.+.+.+.. .++++|||+|||. |.-+|..++   .|+ +|+|+|+||-|++.|+.+++. -+....++.-..
T Consensus       146 HpTT~lcL~~Le~~~-~~g~~vlDvGcGS-GILaIAa~k---LGA~~v~g~DiDp~AV~aa~eNa~~-N~v~~~~~~~~~  219 (300)
T COG2264         146 HPTTSLCLEALEKLL-KKGKTVLDVGCGS-GILAIAAAK---LGAKKVVGVDIDPQAVEAARENARL-NGVELLVQAKGF  219 (300)
T ss_pred             ChhHHHHHHHHHHhh-cCCCEEEEecCCh-hHHHHHHHH---cCCceEEEecCCHHHHHHHHHHHHH-cCCchhhhcccc
Confidence            335556666665543 6899999999995 888887776   366 499999999999999999997 566543334444


Q ss_pred             cccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          183 DIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       183 Da~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +..+.+. .+.||+|+.--|    +..=.++..++.+.+||||.+++-.
T Consensus       220 ~~~~~~~-~~~~DvIVANIL----A~vl~~La~~~~~~lkpgg~lIlSG  263 (300)
T COG2264         220 LLLEVPE-NGPFDVIVANIL----AEVLVELAPDIKRLLKPGGRLILSG  263 (300)
T ss_pred             cchhhcc-cCcccEEEehhh----HHHHHHHHHHHHHHcCCCceEEEEe
Confidence            4444332 248999985443    2455688999999999999998854

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.85  E-value=2.2e-08  Score=96.05  Aligned_cols=100  Identities=18%  Similarity=0.104  Sum_probs=73.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-CCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-LKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-l~~fD~V~  198 (318)
                      .++.+|||+|||. |.-++.+|+   .+.+|+|+|+|+++++.|++.++. .|+ .+++|+++|+.++... .+.||+|+
T Consensus       172 ~~~~~VLDl~cG~-G~~sl~la~---~~~~V~gvD~s~~av~~A~~n~~~-~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv  245 (315)
T PRK03522        172 LPPRSMWDLFCGV-GGFGLHCAT---PGMQLTGIEISAEAIACAKQSAAE-LGL-TNVQFQALDSTQFATAQGEVPDLVL  245 (315)
T ss_pred             cCCCEEEEccCCC-CHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHH-cCC-CceEEEEcCHHHHHHhcCCCCeEEE
Confidence            3578999999996 555678887   478999999999999999999988 777 6899999999876432 24799999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ++---   ..-...+++.+ ..++|++++.+
T Consensus       246 ~dPPr---~G~~~~~~~~l-~~~~~~~ivyv  272 (315)
T PRK03522        246 VNPPR---RGIGKELCDYL-SQMAPRFILYS  272 (315)
T ss_pred             ECCCC---CCccHHHHHHH-HHcCCCeEEEE
Confidence            87411   01122344444 34677665544

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=3.4e-08  Score=93.73  Aligned_cols=105  Identities=23%  Similarity=0.325  Sum_probs=81.9

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe----
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL----  199 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~----  199 (318)
                      +|+|||||. |.=++.+|++ .+.++|+++|||++|++.|++++.. .|+ .++.++.+|..+-..  ++||+|+.    
T Consensus       113 ~ilDlGTGS-G~iai~la~~-~~~~~V~a~Dis~~Al~~A~~Na~~-~~l-~~~~~~~~dlf~~~~--~~fDlIVsNPPY  186 (280)
T COG2890         113 RILDLGTGS-GAIAIALAKE-GPDAEVIAVDISPDALALARENAER-NGL-VRVLVVQSDLFEPLR--GKFDLIVSNPPY  186 (280)
T ss_pred             cEEEecCCh-HHHHHHHHhh-CcCCeEEEEECCHHHHHHHHHHHHH-cCC-ccEEEEeeecccccC--CceeEEEeCCCC
Confidence            899999996 6777888875 4889999999999999999999998 888 778888887765322  27887651    


Q ss_pred             -c-----------------cccCC-C-hhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          200 -A-----------------ALVGM-D-KDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       200 -a-----------------alvgm-~-~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                       .                 ++++- + .+-..+++.++.+.|+|||.+++..+.+
T Consensus       187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~  241 (280)
T COG2890         187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT  241 (280)
T ss_pred             CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC
Confidence             1                 22211 1 2467789999999999999999988643

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.83  E-value=4.1e-08  Score=85.65  Aligned_cols=100  Identities=16%  Similarity=0.113  Sum_probs=72.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||++.+| ..++++   +.+|+++|+|+.+++.+++.+..    ..+++++.+|+.+++.....||.|+.
T Consensus        12 ~~~~~vLEiG~G~G~lt-~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~----~~~v~ii~~D~~~~~~~~~~~d~vi~   83 (169)
T smart00650       12 RPGDTVLEIGPGKGALT-EELLER---AARVTAIEIDPRLAPRLREKFAA----ADNLTVIHGDALKFDLPKLQPYKVVG   83 (169)
T ss_pred             CCcCEEEEECCCccHHH-HHHHhc---CCeEEEEECCHHHHHHHHHHhcc----CCCEEEEECchhcCCccccCCCEEEE
Confidence            56789999999975555 556653   78999999999999999988764    25899999999998655446998885


Q ss_pred             ccccCCChhHHHHHHHHHHHh--ccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKY--MAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~--LkpGg~lv~r~  231 (318)
                      .-....    ..+++..+.+.  +.+||.+++-.
T Consensus        84 n~Py~~----~~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       84 NLPYNI----STPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             CCCccc----HHHHHHHHHhcCCCcceEEEEEEH
Confidence            532221    23445444443  34788888855

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.79  E-value=6.1e-08  Score=92.52  Aligned_cols=125  Identities=15%  Similarity=0.213  Sum_probs=89.3

Q ss_pred             HHHHhhcc-cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC
Q 021008          111 FNILTQHC-SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS  188 (318)
Q Consensus       111 ~~~l~~~~-~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~  188 (318)
                      ++++..+. .-.+++|||||||. |+=++.|+++   |+ .|+|||.++-.....+-+-.- .|...++.+.---+.+++
T Consensus       104 W~rl~p~l~~L~gk~VLDIGC~n-GY~~frM~~~---GA~~ViGiDP~~lf~~QF~~i~~~-lg~~~~~~~lplgvE~Lp  178 (315)
T PF08003_consen  104 WDRLLPHLPDLKGKRVLDIGCNN-GYYSFRMLGR---GAKSVIGIDPSPLFYLQFEAIKHF-LGQDPPVFELPLGVEDLP  178 (315)
T ss_pred             HHHHHhhhCCcCCCEEEEecCCC-cHHHHHHhhc---CCCEEEEECCChHHHHHHHHHHHH-hCCCccEEEcCcchhhcc
Confidence            44444444 36889999999995 7777888763   66 699999999888776544443 444444444434566787


Q ss_pred             cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC--CCcc-cccccC
Q 021008          189 SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA--HGAR-AFLYPV  242 (318)
Q Consensus       189 ~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~--~g~r-~~lYP~  242 (318)
                      . .+.||+||....+ .+..+....|.++...|+|||.|++.+.  .|-. ..++|.
T Consensus       179 ~-~~~FDtVF~MGVL-YHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~  233 (315)
T PF08003_consen  179 N-LGAFDTVFSMGVL-YHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE  233 (315)
T ss_pred             c-cCCcCEEEEeeeh-hccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC
Confidence            6 7799999987744 2346788999999999999999998761  2322 366664

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.77  E-value=5.2e-08  Score=88.15  Aligned_cols=106  Identities=14%  Similarity=0.076  Sum_probs=76.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-CCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-LKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-l~~fD~V~  198 (318)
                      ..+.+|||+|||.+.++...+++   ..++|++||+|+++++.++++++. .|+ .+++|+++|+.+.... ...||+|+
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr---~a~~V~~vE~~~~a~~~a~~Nl~~-~~~-~~v~~~~~D~~~~l~~~~~~fDlV~  126 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSR---YAAGATLLEMDRAVAQQLIKNLAT-LKA-GNARVVNTNALSFLAQPGTPHNVVF  126 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHH-hCC-CcEEEEEchHHHHHhhcCCCceEEE
Confidence            45689999999975555434554   247999999999999999999988 676 4799999999874322 23699999


Q ss_pred             eccccCCChhHHHHHHHHHHHh--ccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKY--MAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~--LkpGg~lv~r~~  232 (318)
                      ++---  ...-..++++.+...  ++|++.+++...
T Consensus       127 ~DPPy--~~g~~~~~l~~l~~~~~l~~~~iv~ve~~  160 (199)
T PRK10909        127 VDPPF--RKGLLEETINLLEDNGWLADEALIYVESE  160 (199)
T ss_pred             ECCCC--CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence            87521  123345566666553  789998888754

>PRK00536 speE spermidine synthase; Provisional

Probab=98.77  E-value=7.1e-08  Score=90.76  Aligned_cols=103  Identities=12%  Similarity=0.117  Sum_probs=77.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC-CC-CCCeEEEEccccccCcCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP-DL-STRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~-gl-~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      .+.|+|||.||.|- |.++.-+.| | +. +|+-||||+++++.|++.+.... ++ ..|++++.. ..+.  ..+.||+
T Consensus        70 h~~pk~VLIiGGGD-Gg~~REvLk-h-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~--~~~~fDV  142 (262)
T PRK00536         70 KKELKEVLIVDGFD-LELAHQLFK-Y-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL--DIKKYDL  142 (262)
T ss_pred             CCCCCeEEEEcCCc-hHHHHHHHC-c-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc--cCCcCCE
Confidence            37899999999996 555555554 5 44 99999999999999999765411 22 468888762 2221  1248999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      |+++++.      ...+++.+.+.|+|||++++-+...
T Consensus       143 IIvDs~~------~~~fy~~~~~~L~~~Gi~v~Qs~sp  174 (262)
T PRK00536        143 IICLQEP------DIHKIDGLKRMLKEDGVFISVAKHP  174 (262)
T ss_pred             EEEcCCC------ChHHHHHHHHhcCCCcEEEECCCCc
Confidence            9999853      2578899999999999999987644

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=9.6e-08  Score=91.04  Aligned_cols=104  Identities=14%  Similarity=0.227  Sum_probs=77.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ....+|||+|||. |.-++.+|+. .|.+++|-+|+|..|++.||+.++. -++... .+..+|..+-..+  +||.|+.
T Consensus       157 ~~~~~vlDlGCG~-Gvlg~~la~~-~p~~~vtmvDvn~~Av~~ar~Nl~~-N~~~~~-~v~~s~~~~~v~~--kfd~Iis  230 (300)
T COG2813         157 DLGGKVLDLGCGY-GVLGLVLAKK-SPQAKLTLVDVNARAVESARKNLAA-NGVENT-EVWASNLYEPVEG--KFDLIIS  230 (300)
T ss_pred             cCCCcEEEeCCCc-cHHHHHHHHh-CCCCeEEEEecCHHHHHHHHHhHHH-cCCCcc-EEEEecccccccc--cccEEEe
Confidence            3445999999995 5555788876 4899999999999999999999987 555443 6777888764433  8999984


Q ss_pred             cccc--CCC--hhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALV--GMD--KDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalv--gm~--~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      -=-.  |..  ..--.+++++..++|++||.|-+
T Consensus       231 NPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         231 NPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             CCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence            3211  211  12234899999999999997644

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.77  E-value=4.5e-08  Score=88.12  Aligned_cols=107  Identities=20%  Similarity=0.188  Sum_probs=81.1

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---cCCCCccEEEe
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---SALKDYEVVFL  199 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---~~l~~fD~V~~  199 (318)
                      .-+++|||| .|--.+.+|+++ |+..++|||+....+..|.+.+.+ .++ .++.++++|+..+.   .+.++.|-|++
T Consensus        19 ~l~lEIG~G-~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~-~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i   94 (195)
T PF02390_consen   19 PLILEIGCG-KGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEK-RGL-KNVRFLRGDARELLRRLFPPGSVDRIYI   94 (195)
T ss_dssp             EEEEEET-T-TSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHH-HTT-SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred             CeEEEecCC-CCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHh-hcc-cceEEEEccHHHHHhhcccCCchheEEE
Confidence            389999999 577778899886 999999999999999999888887 677 89999999998732   23458999987


Q ss_pred             ccccCCChhH-------HHHHHHHHHHhccCCeEEEEEcCC
Q 021008          200 AALVGMDKDE-------KIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       200 aalvgm~~~~-------k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      .---++++..       ...+++.+++.|+|||.|.+.+.+
T Consensus        95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~  135 (195)
T PF02390_consen   95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV  135 (195)
T ss_dssp             ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred             eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence            7644554311       246899999999999999998854

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PLN02672 methionine S-methyltransferase

Probab=98.76  E-value=5.7e-08  Score=106.20  Aligned_cols=110  Identities=18%  Similarity=0.206  Sum_probs=82.6

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC---------------CCCCeEEEEccccc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD---------------LSTRMFFHTTDIMN  186 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g---------------l~~ri~f~~gDa~~  186 (318)
                      +.+|||||||. |.-++.+|+++ +.++|+++|||++|++.|+++++. .+               +.+|++|+++|..+
T Consensus       119 ~~~VLDlG~GS-G~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~-n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~  195 (1082)
T PLN02672        119 DKTVAELGCGN-GWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYL-NALDDDGLPVYDGEGKTLLDRVEFYESDLLG  195 (1082)
T ss_pred             CCEEEEEecch-HHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH-cCcccccccccccccccccccEEEEECchhh
Confidence            57999999995 77778888764 778999999999999999999876 33               23689999999987


Q ss_pred             cCcCCC-CccEEEec--------------------------------cccCC----C-hhHHHHHHHHHHHhccCCeEEE
Q 021008          187 VSSALK-DYEVVFLA--------------------------------ALVGM----D-KDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       187 l~~~l~-~fD~V~~a--------------------------------alvgm----~-~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      .....+ .||+|+.-                                ||.|.    + ..-..+++++..++|+|||.++
T Consensus       196 ~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~  275 (1082)
T PLN02672        196 YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI  275 (1082)
T ss_pred             hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence            543322 69987611                                11110    0 1234788899999999999999


Q ss_pred             EEcCCC
Q 021008          229 LRSAHG  234 (318)
Q Consensus       229 ~r~~~g  234 (318)
                      +.-+..
T Consensus       276 lEiG~~  281 (1082)
T PLN02672        276 FNMGGR  281 (1082)
T ss_pred             EEECcc
Confidence            877543

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.76  E-value=9.1e-08  Score=95.99  Aligned_cols=100  Identities=15%  Similarity=0.129  Sum_probs=74.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD  195 (318)
                      .++.+|||+|||++ .-++.+|+.   +.+|+|+|+|+++++.|+++++. .|+ ++++|+++|+.+..    ...+.||
T Consensus       296 ~~~~~VLDlgcGtG-~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~-~~~-~~v~~~~~d~~~~l~~~~~~~~~fD  369 (443)
T PRK13168        296 QPGDRVLDLFCGLG-NFTLPLARQ---AAEVVGVEGVEAMVERARENARR-NGL-DNVTFYHANLEEDFTDQPWALGGFD  369 (443)
T ss_pred             CCCCEEEEEeccCC-HHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHH-cCC-CceEEEEeChHHhhhhhhhhcCCCC
Confidence            56789999999975 555678874   57999999999999999999987 676 46999999997632    1224799


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +|+++-    +.....++++.+.+ ++|++.+.+-
T Consensus       370 ~Vi~dP----Pr~g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        370 KVLLDP----PRAGAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             EEEECc----CCcChHHHHHHHHh-cCCCeEEEEE
Confidence            999874    21222356666655 7888776553

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.74  E-value=7.4e-08  Score=97.48  Aligned_cols=110  Identities=16%  Similarity=0.203  Sum_probs=87.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V  197 (318)
                      +.++.+|||+++||+|-|+. +|........|+++|+++..++..++++++ .|+ .++.+...|+..+.... ..||.|
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~-la~~l~~~g~lvA~D~~~~R~~~L~~nl~r-~G~-~nv~v~~~D~~~~~~~~~~~fD~I  187 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQ-IAALMNNQGAIVANEYSASRVKVLHANISR-CGV-SNVALTHFDGRVFGAALPETFDAI  187 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHH-HHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-cCC-CeEEEEeCchhhhhhhchhhcCeE
Confidence            36889999999999988865 565543456999999999999999999999 888 55889999998764333 379999


Q ss_pred             Eecccc---CC---ChhHH---------------HHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALV---GM---DKDEK---------------IRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalv---gm---~~~~k---------------~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++++-+   ||   +.+.+               .++|++.++.|||||+||+-.
T Consensus       188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            998855   33   11111               678999999999999998865

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.71  E-value=8.1e-08  Score=85.48  Aligned_cols=91  Identities=12%  Similarity=0.113  Sum_probs=67.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cC-cCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VS-SALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~-~~l~~fD~V  197 (318)
                      .++++|||||||.+.+ +..+++.  .++.++|+|+++++++.|++         .+++++.+|+.+ ++ ...++||+|
T Consensus        12 ~~~~~iLDiGcG~G~~-~~~l~~~--~~~~~~giD~s~~~i~~a~~---------~~~~~~~~d~~~~l~~~~~~sfD~V   79 (194)
T TIGR02081        12 PPGSRVLDLGCGDGEL-LALLRDE--KQVRGYGIEIDQDGVLACVA---------RGVNVIQGDLDEGLEAFPDKSFDYV   79 (194)
T ss_pred             CCCCEEEEeCCCCCHH-HHHHHhc--cCCcEEEEeCCHHHHHHHHH---------cCCeEEEEEhhhcccccCCCCcCEE
Confidence            5678999999997544 5567654  47789999999999998853         236889999876 43 344589999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAP  223 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~Lkp  223 (318)
                      +....++ ...+..++++++.+.+++
T Consensus        80 i~~~~l~-~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        80 ILSQTLQ-ATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             EEhhHhH-cCcCHHHHHHHHHHhCCe
Confidence            9765332 235677889998887665

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.67  E-value=1.8e-07  Score=93.28  Aligned_cols=100  Identities=14%  Similarity=0.106  Sum_probs=74.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc----CCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS----ALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~----~l~~fD  195 (318)
                      .++.+|||+|||. |..++.+|+.   ..+|+|+|+|+++++.|++++.. .|+ ++++|+.+|+.+...    ....||
T Consensus       291 ~~~~~vLDl~cG~-G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~-~~~-~nv~~~~~d~~~~l~~~~~~~~~~D  364 (431)
T TIGR00479       291 QGEELVVDAYCGV-GTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAEL-NGI-ANVEFLAGTLETVLPKQPWAGQIPD  364 (431)
T ss_pred             CCCCEEEEcCCCc-CHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHH-hCC-CceEEEeCCHHHHHHHHHhcCCCCC
Confidence            5668999999996 6666788873   56899999999999999999987 676 589999999976321    123699


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +|+++---   ..-...+++.+. .++|++.+.+
T Consensus       365 ~vi~dPPr---~G~~~~~l~~l~-~l~~~~ivyv  394 (431)
T TIGR00479       365 VLLLDPPR---KGCAAEVLRTII-ELKPERIVYV  394 (431)
T ss_pred             EEEECcCC---CCCCHHHHHHHH-hcCCCEEEEE
Confidence            99977511   111356777665 4889876554

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.65  E-value=1e-08  Score=82.31  Aligned_cols=101  Identities=18%  Similarity=0.256  Sum_probs=48.6

Q ss_pred             EEEccCCChHHHHHHHHhCCCCc--EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--CCccEEEecc
Q 021008          126 AFIGSGPLPLTSIVLAINHLTTT--CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--KDYEVVFLAA  201 (318)
Q Consensus       126 L~IGsGplp~tai~LA~~~~~ga--~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--~~fD~V~~aa  201 (318)
                      ++||+. .|.|++++++...++.  ++++||..+. .+.+++.+++ .++..+++++.+|..+....+  ..||++|+++
T Consensus         1 lEiG~~-~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTY-SGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             ---------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             Cccccc-cccccccccccccccccCCEEEEECCCc-ccccchhhhh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            589987 6889988887543443  7999999997 4556666666 678889999999998643222  4899999998


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -.  ..+...+-++.+.++|+|||++++.+
T Consensus        78 ~H--~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   78 DH--SYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             -----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CC--CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            42  34667778899999999999999875

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.65  E-value=7.8e-08  Score=94.37  Aligned_cols=161  Identities=14%  Similarity=0.157  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHH
Q 021008           58 VQDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTS  137 (318)
Q Consensus        58 ~~~l~~~l~~l~~~ae~~lE~~~A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~ta  137 (318)
                      ...+.+.+.++++..+...|..|...++.++-       ..+-.+....++.|--...+....++.+++++||| +|..+
T Consensus        54 ~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~-------~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~  125 (364)
T KOG1269|consen   54 TEDLPEQIAKYYNNSTDLYERNWGQSFHFGRI-------PEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTG-VGGPS  125 (364)
T ss_pred             ccccchHHHHHhcccchhhhhhhccchhccCc-------cchhHHHHHHHhhcchHHHhhcCcccccccccCcC-cCchh
Confidence            34566778888888889999999999888753       22334444444444333333334677799999999 67777


Q ss_pred             HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE-eccccCCChhHHHHHHHH
Q 021008          138 IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF-LAALVGMDKDEKIRVIDH  216 (318)
Q Consensus       138 i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~-~aalvgm~~~~k~~vl~~  216 (318)
                      ..++.  +.++.++|+|.++..+.++...... .++.++..|+.+|....|++.+.||.|+ +++..++  .....++++
T Consensus       126 ~~i~~--f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~--~~~~~~y~E  200 (364)
T KOG1269|consen  126 RYIAV--FKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHA--PDLEKVYAE  200 (364)
T ss_pred             HHHHH--hccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEeecccC--CcHHHHHHH
Confidence            78875  4789999999999999999998887 8898999999999999999999999888 4666554  578899999


Q ss_pred             HHHhccCCeEEEEEc
Q 021008          217 LAKYMAPGALLMLRS  231 (318)
Q Consensus       217 l~r~LkpGg~lv~r~  231 (318)
                      ++|+++|||++++-.
T Consensus       201 i~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  201 IYRVLKPGGLFIVKE  215 (364)
T ss_pred             HhcccCCCceEEeHH
Confidence            999999999998855

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.64  E-value=4.4e-07  Score=81.20  Aligned_cols=101  Identities=17%  Similarity=0.142  Sum_probs=82.3

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      +.+++||||| .|+..+-+|-. .|..+|+-+|-...-++.-+..++. +|+ ++++++++.+.+ +.....||+|..-|
T Consensus        49 ~~~~lDiGSG-aGfPGipLaI~-~p~~~~~LvEs~~KK~~FL~~~~~~-L~L-~nv~v~~~R~E~-~~~~~~fd~v~aRA  123 (184)
T PF02527_consen   49 GKKVLDIGSG-AGFPGIPLAIA-RPDLQVTLVESVGKKVAFLKEVVRE-LGL-SNVEVINGRAEE-PEYRESFDVVTARA  123 (184)
T ss_dssp             CSEEEEETST-TTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHH-HT--SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred             CceEEecCCC-CCChhHHHHHh-CCCCcEEEEeCCchHHHHHHHHHHH-hCC-CCEEEEEeeecc-cccCCCccEEEeeh
Confidence            3389999999 69999999975 4999999999999999999999998 899 579999999998 33445899999988


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +-     +-..+++-+.+.++|||.++.--+
T Consensus       124 v~-----~l~~l~~~~~~~l~~~G~~l~~KG  149 (184)
T PF02527_consen  124 VA-----PLDKLLELARPLLKPGGRLLAYKG  149 (184)
T ss_dssp             SS-----SHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             hc-----CHHHHHHHHHHhcCCCCEEEEEcC
Confidence            63     445788888999999998877543

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.62  E-value=2.3e-07  Score=85.67  Aligned_cols=108  Identities=16%  Similarity=0.202  Sum_probs=89.4

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc---CCCCccEEE
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS---ALKDYEVVF  198 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~---~l~~fD~V~  198 (318)
                      ..-+++|||| .|-..+-+|+++ |...++|||+-...+..|-+.+.+ .|+. +++++++||.++..   +.++.|-|+
T Consensus        49 ~pi~lEIGfG-~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~-~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~  124 (227)
T COG0220          49 APIVLEIGFG-MGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKE-LGLK-NLRLLCGDAVEVLDYLIPDGSLDKIY  124 (227)
T ss_pred             CcEEEEECCC-CCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHH-cCCC-cEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence            3589999999 678888999875 999999999999999999999998 7774 99999999987532   334789888


Q ss_pred             eccccCCChhHH-------HHHHHHHHHhccCCeEEEEEcCC
Q 021008          199 LAALVGMDKDEK-------IRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       199 ~aalvgm~~~~k-------~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      +.--.+|++...       ..+++.+++.|+|||.|-+.+.+
T Consensus       125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~  166 (227)
T COG0220         125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN  166 (227)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence            876667765322       46789999999999999998854

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.61  E-value=3.3e-07  Score=90.22  Aligned_cols=101  Identities=19%  Similarity=0.095  Sum_probs=75.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~  198 (318)
                      .++.+|||+|||. |.-++.+|.   .+.+|+|||+|+.+++.|+++++. .|+ ++++|+++|+.+..... ++||+|+
T Consensus       232 ~~~~~vLDL~cG~-G~~~l~la~---~~~~v~~vE~~~~av~~a~~N~~~-~~~-~~~~~~~~d~~~~~~~~~~~~D~vi  305 (374)
T TIGR02085       232 IPVTQMWDLFCGV-GGFGLHCAG---PDTQLTGIEIESEAIACAQQSAQM-LGL-DNLSFAALDSAKFATAQMSAPELVL  305 (374)
T ss_pred             cCCCEEEEccCCc-cHHHHHHhh---cCCeEEEEECCHHHHHHHHHHHHH-cCC-CcEEEEECCHHHHHHhcCCCCCEEE
Confidence            4568999999996 555566775   478999999999999999999988 777 48999999998754322 3699999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      ++=--   ..-..++++.+. .++|++++.+-
T Consensus       306 ~DPPr---~G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       306 VNPPR---RGIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             ECCCC---CCCcHHHHHHHH-hcCCCeEEEEE
Confidence            87411   122345666665 47888766553

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.58  E-value=5.8e-07  Score=80.47  Aligned_cols=107  Identities=8%  Similarity=-0.046  Sum_probs=78.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC---C-Cc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL---K-DY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l---~-~f  194 (318)
                      ..+.+|||++||.+.++ +.++.+   |+ .|++||+|+.+++.++++++. .++.++++++.+|+.+....+   . .|
T Consensus        48 ~~g~~vLDLfaGsG~lg-lea~sr---ga~~v~~vE~~~~a~~~~~~N~~~-~~~~~~~~~~~~D~~~~l~~~~~~~~~~  122 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLG-EEALSR---GAKVAFLEEDDRKANQTLKENLAL-LKSGEQAEVVRNSALRALKFLAKKPTFD  122 (189)
T ss_pred             cCCCEEEEecCCCcHHH-HHHHhC---CCCEEEEEeCCHHHHHHHHHHHHH-hCCcccEEEEehhHHHHHHHhhccCCCc
Confidence            46789999999975555 445543   54 899999999999999999998 788788999999996632211   2 48


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHH--hccCCeEEEEEcCC
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAK--YMAPGALLMLRSAH  233 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r--~LkpGg~lv~r~~~  233 (318)
                      |+||++=--+  .....++++.+..  .+++||.+++....
T Consensus       123 dvv~~DPPy~--~~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       123 NVIYLDPPFF--NGALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             eEEEECcCCC--CCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            9999875332  2234555655544  58999999987654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.56  E-value=5.9e-07  Score=87.22  Aligned_cols=109  Identities=13%  Similarity=0.143  Sum_probs=72.9

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--------CCCCCCCeEEEEccccc------
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--------DPDLSTRMFFHTTDIMN------  186 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--------~~gl~~ri~f~~gDa~~------  186 (318)
                      ++.+|||+|||-+|-. .-+.+.  .=..++|+||++++|+.|++....        .....-...|+.+|...      
T Consensus        62 ~~~~VLDl~CGkGGDL-~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~  138 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDL-QKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK  138 (331)
T ss_dssp             TT-EEEEET-TTTTTH-HHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred             CCCeEEEecCCCchhH-HHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence            7899999999975544 444442  346899999999999999888721        01112356789999874      


Q ss_pred             cCcCCCCccEEEecc-cc-CCChhHHHH-HHHHHHHhccCCeEEEEEcC
Q 021008          187 VSSALKDYEVVFLAA-LV-GMDKDEKIR-VIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       187 l~~~l~~fD~V~~aa-lv-gm~~~~k~~-vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++.....||+|=.+. +. ...-+++++ +|.++.+.|+|||.++....
T Consensus       139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            222224899987543 33 223466666 99999999999999988664

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.55  E-value=3e-07  Score=82.60  Aligned_cols=91  Identities=12%  Similarity=0.127  Sum_probs=66.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cC-cCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VS-SALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~-~~l~~fD~  196 (318)
                      ..+++||||+|||-+-+-+ .|.+.  .+++..|||+|++.+..+.+         ..+.++++|+.+ |. +++++||.
T Consensus        11 I~pgsrVLDLGCGdG~LL~-~L~~~--k~v~g~GvEid~~~v~~cv~---------rGv~Viq~Dld~gL~~f~d~sFD~   78 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLA-YLKDE--KQVDGYGVEIDPDNVAACVA---------RGVSVIQGDLDEGLADFPDQSFDY   78 (193)
T ss_pred             cCCCCEEEecCCCchHHHH-HHHHh--cCCeEEEEecCHHHHHHHHH---------cCCCEEECCHHHhHhhCCCCCccE
Confidence            3788999999999654433 34432  59999999999998877642         446789999975 42 56679999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhcc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMA  222 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~Lk  222 (318)
                      |+++..+. ......++|+++.|+-|
T Consensus        79 VIlsqtLQ-~~~~P~~vL~EmlRVgr  103 (193)
T PF07021_consen   79 VILSQTLQ-AVRRPDEVLEEMLRVGR  103 (193)
T ss_pred             EehHhHHH-hHhHHHHHHHHHHHhcC
Confidence            99776552 23566788988876633

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.53  E-value=3.9e-07  Score=86.85  Aligned_cols=115  Identities=16%  Similarity=0.191  Sum_probs=83.9

Q ss_pred             CCCEEEEEccCCC--hHHHHHHHHhCCC----CcEEEEEeCChHHHHHHHHHh------------------hc-------
Q 021008          121 FPTKIAFIGSGPL--PLTSIVLAINHLT----TTCFDNYDIDPSANSKALSLV------------------SS-------  169 (318)
Q Consensus       121 ~~~rVL~IGsGpl--p~tai~LA~~~~~----ga~V~gvDid~~ai~~Ar~~~------------------~~-------  169 (318)
                      .+-||.-.||+++  |+|..++.....+    +.+|+|.|||+.+++.|++-.                  ..       
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            3479999999863  3444333333221    478999999999999998652                  11       


Q ss_pred             ----CCCCCCCeEEEEccccccCcC-CCCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          170 ----DPDLSTRMFFHTTDIMNVSSA-LKDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       170 ----~~gl~~ri~f~~gDa~~l~~~-l~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                          ...+..+|+|...|+.+.+.. .+.||+|+.-. +...+.+.+.++++.+++.|+|||.|++-.+..+
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEsl  266 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSENF  266 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcccc
Confidence                012457899999999874432 45899999744 3355789999999999999999999988765443

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.53  E-value=1.6e-07  Score=82.59  Aligned_cols=74  Identities=23%  Similarity=0.224  Sum_probs=56.3

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC--C-ccEEEe
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK--D-YEVVFL  199 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~--~-fD~V~~  199 (318)
                      +.|+|+-|| .|.-++.+|+.   ..+|++||+||..++.|+.+++. .|..++|.|++||..++.....  . ||+||+
T Consensus         1 ~~vlD~fcG-~GGNtIqFA~~---~~~Viaidid~~~~~~a~hNa~v-YGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl   75 (163)
T PF09445_consen    1 TTVLDAFCG-VGGNTIQFART---FDRVIAIDIDPERLECAKHNAEV-YGVADNIDFICGDFFELLKRLKSNKIFDVVFL   75 (163)
T ss_dssp             SEEEETT-T-TSHHHHHHHHT---T-EEEEEES-HHHHHHHHHHHHH-TT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred             CEEEEeccC-cCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence            368999999 67788999983   67999999999999999999999 9999999999999998754333  2 899986


Q ss_pred             cc
Q 021008          200 AA  201 (318)
Q Consensus       200 aa  201 (318)
                      +-
T Consensus        76 SP   77 (163)
T PF09445_consen   76 SP   77 (163)
T ss_dssp             --
T ss_pred             CC
Confidence            64

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.51  E-value=5.6e-07  Score=83.27  Aligned_cols=118  Identities=19%  Similarity=0.217  Sum_probs=80.6

Q ss_pred             hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCC--cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc
Q 021008          106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTT--TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD  183 (318)
Q Consensus       106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~g--a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD  183 (318)
                      .+..|+..+.......+.+||+|||| .|-|.+=+.+. .++  -.|.+.|.+|.|+++-++....   ...++.--+.|
T Consensus        56 wL~~Efpel~~~~~~~~~~ilEvGCG-vGNtvfPll~~-~~n~~l~v~acDfsp~Ai~~vk~~~~~---~e~~~~afv~D  130 (264)
T KOG2361|consen   56 WLLREFPELLPVDEKSAETILEVGCG-VGNTVFPLLKT-SPNNRLKVYACDFSPRAIELVKKSSGY---DESRVEAFVWD  130 (264)
T ss_pred             HHHHhhHHhhCccccChhhheeeccC-CCcccchhhhc-CCCCCeEEEEcCCChHHHHHHHhcccc---chhhhccccee
Confidence            34455555543333455589999999 57776666653 344  8899999999999998877665   23555444444


Q ss_pred             ccc--c--CcCCCCccEE---E-eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          184 IMN--V--SSALKDYEVV---F-LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       184 a~~--l--~~~l~~fD~V---~-~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +..  +  +...+++|.+   | ++|+   +++...+++.++++++||||.|++|+
T Consensus       131 lt~~~~~~~~~~~svD~it~IFvLSAi---~pek~~~a~~nl~~llKPGG~llfrD  183 (264)
T KOG2361|consen  131 LTSPSLKEPPEEGSVDIITLIFVLSAI---HPEKMQSVIKNLRTLLKPGGSLLFRD  183 (264)
T ss_pred             ccchhccCCCCcCccceEEEEEEEecc---ChHHHHHHHHHHHHHhCCCcEEEEee
Confidence            442  1  1233478843   3 3443   45777899999999999999999998

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.51  E-value=6.7e-07  Score=90.11  Aligned_cols=129  Identities=14%  Similarity=0.209  Sum_probs=87.2

Q ss_pred             CcChhhHHHhhHHHHHHHhhccc--CCCCEEEEEccCCChHHHHHHHH--hCCCCcEEEEEeCChHHHHHHHHHhhcCCC
Q 021008           97 FPYYSNYIKLSQLEFNILTQHCS--RFPTKIAFIGSGPLPLTSIVLAI--NHLTTTCFDNYDIDPSANSKALSLVSSDPD  172 (318)
Q Consensus        97 fpY~~ny~~L~~~E~~~l~~~~~--~~~~rVL~IGsGplp~tai~LA~--~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g  172 (318)
                      .-.|+.|++.+..-+.-..+...  ..+..|++||||.+|++..++..  ++....+|.+|+-++.|+...+++++. -|
T Consensus       160 ~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~-n~  238 (448)
T PF05185_consen  160 PVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA-NG  238 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh-cC
Confidence            35688888887553332221100  12578999999999998655432  222246899999999999888888777 78


Q ss_pred             CCCCeEEEEccccccCcCCCCccEEEeccc--cCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          173 LSTRMFFHTTDIMNVSSALKDYEVVFLAAL--VGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       173 l~~ri~f~~gDa~~l~~~l~~fD~V~~aal--vgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      ++++|+++.+|+.++... ...|+|+..-+  .| +-|--.++|....|.|||||+++
T Consensus       239 w~~~V~vi~~d~r~v~lp-ekvDIIVSElLGsfg-~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  239 WGDKVTVIHGDMREVELP-EKVDIIVSELLGSFG-DNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             TTTTEEEEES-TTTSCHS-S-EEEEEE---BTTB-TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             CCCeEEEEeCcccCCCCC-CceeEEEEeccCCcc-ccccCHHHHHHHHhhcCCCCEEe
Confidence            999999999999987433 28999984321  12 33455678899999999999875

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.50  E-value=6.3e-07  Score=86.66  Aligned_cols=121  Identities=17%  Similarity=0.165  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhhcCCCCcccccC-CcChhhHHHhhHHHHHHHh-hccc-CCCCEEEEEccCCChHHHHHHHHhCCCCcEE
Q 021008           74 GLLESHFSSILASFENPIANLNI-FPYYSNYIKLSQLEFNILT-QHCS-RFPTKIAFIGSGPLPLTSIVLAINHLTTTCF  150 (318)
Q Consensus        74 ~~lE~~~A~~l~~~~~P~~~L~~-fpY~~ny~~L~~~E~~~l~-~~~~-~~~~rVL~IGsGplp~tai~LA~~~~~ga~V  150 (318)
                      ++|..+|.-..-  +-|-+.|-+ -|-.-||+..+.-.+.... ...+ ..+.+|||||||++++..+..+ +. ++++|
T Consensus        66 alL~~~ygl~~w--dip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~-~~-~~~~~  141 (321)
T PRK11727         66 ALLAHFYGVAHW--DIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGV-HE-YGWRF  141 (321)
T ss_pred             HHHHHhcCCCcc--cCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHh-hC-CCCEE
Confidence            445555543321  334444443 3656677655543322110 0111 3568999999998667766544 43 69999


Q ss_pred             EEEeCChHHHHHHHHHhhcCC-CCCCCeEEEE-ccccccCc----CCCCccEEEe
Q 021008          151 DNYDIDPSANSKALSLVSSDP-DLSTRMFFHT-TDIMNVSS----ALKDYEVVFL  199 (318)
Q Consensus       151 ~gvDid~~ai~~Ar~~~~~~~-gl~~ri~f~~-gDa~~l~~----~l~~fD~V~~  199 (318)
                      +|+|||+.+++.|+++++. - ++.++|+++. .|..++..    ..+.||+|+.
T Consensus       142 ~atDId~~Al~~A~~Nv~~-Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivc  195 (321)
T PRK11727        142 VGSDIDPQALASAQAIISA-NPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLC  195 (321)
T ss_pred             EEEeCCHHHHHHHHHHHHh-ccCCcCcEEEEEccchhhhhhcccccCCceEEEEe
Confidence            9999999999999999998 6 7999999964 45444332    2347999884

>PHA03411 putative methyltransferase; Provisional

Probab=98.50  E-value=6.3e-07  Score=84.85  Aligned_cols=102  Identities=11%  Similarity=0.157  Sum_probs=71.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+.+|||+|||.+.++ +.++++ .++.+|+++|+|+++++.|++..       .+++++++|+.+... ...||+|+.
T Consensus        63 ~~~grVLDLGcGsGils-l~la~r-~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIs  132 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLS-FCMLHR-CKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVIS  132 (279)
T ss_pred             ccCCeEEEcCCCCCHHH-HHHHHh-CCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEE
Confidence            34679999999975444 455554 35789999999999999998753       358899999998753 348999986


Q ss_pred             cc-ccCCChhHH------------------HHHHHHHHHhccCCeEEEEEc
Q 021008          200 AA-LVGMDKDEK------------------IRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aa-lvgm~~~~k------------------~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .- +...+..++                  .++++.+.+.|+|+|.+.+..
T Consensus       133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y  183 (279)
T PHA03411        133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY  183 (279)
T ss_pred             cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence            32 222221111                  356677788888888765553

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.47  E-value=9.4e-07  Score=80.11  Aligned_cols=114  Identities=11%  Similarity=0.108  Sum_probs=79.7

Q ss_pred             HhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc
Q 021008          105 KLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI  184 (318)
Q Consensus       105 ~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa  184 (318)
                      +-...|..++... ..++.+|+|.-||-+|++ +.+|+. ..+..|+++|++|.+++..++.++. -++.++|..+.+|+
T Consensus        86 ~rl~~Er~Ri~~~-v~~~e~VlD~faGIG~f~-l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~l-Nkv~~~i~~~~~D~  161 (200)
T PF02475_consen   86 PRLSTERRRIANL-VKPGEVVLDMFAGIGPFS-LPIAKH-GKAKRVYAVDLNPDAVEYLKENIRL-NKVENRIEVINGDA  161 (200)
T ss_dssp             GGGHHHHHHHHTC---TT-EEEETT-TTTTTH-HHHHHH-T-SSEEEEEES-HHHHHHHHHHHHH-TT-TTTEEEEES-G
T ss_pred             cccHHHHHHHHhc-CCcceEEEEccCCccHHH-HHHhhh-cCccEEEEecCCHHHHHHHHHHHHH-cCCCCeEEEEcCCH
Confidence            3445666666544 478899999999955555 667763 4688999999999999999999998 78999999999999


Q ss_pred             cccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          185 MNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       185 ~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      .++.. ...||.|++.- .    +.-..++....+.+++||++-
T Consensus       162 ~~~~~-~~~~drvim~l-p----~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  162 REFLP-EGKFDRVIMNL-P----ESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             GG----TT-EEEEEE---T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred             HHhcC-ccccCEEEECC-h----HHHHHHHHHHHHHhcCCcEEE
Confidence            99865 55899888654 2    222468888899999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.44  E-value=1.4e-06  Score=86.33  Aligned_cols=109  Identities=15%  Similarity=0.137  Sum_probs=85.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCC-CCCeEEEEccccccCc----CCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDL-STRMFFHTTDIMNVSS----ALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl-~~ri~f~~gDa~~l~~----~l~~  193 (318)
                      ..++|||++=|=++|+| +..|.   -|| +||+||+|..++++|+++++- -|+ .++++|+++|+.+...    .-..
T Consensus       216 ~~GkrvLNlFsYTGgfS-v~Aa~---gGA~~vt~VD~S~~al~~a~~N~~L-Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~  290 (393)
T COG1092         216 AAGKRVLNLFSYTGGFS-VHAAL---GGASEVTSVDLSKRALEWARENAEL-NGLDGDRHRFIVGDVFKWLRKAERRGEK  290 (393)
T ss_pred             ccCCeEEEecccCcHHH-HHHHh---cCCCceEEEeccHHHHHHHHHHHHh-cCCCccceeeehhhHHHHHHHHHhcCCc
Confidence            45999999999876665 55554   488 999999999999999999997 787 4789999999997432    1128


Q ss_pred             ccEEEecc--cc---CC--C-hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          194 YEVVFLAA--LV---GM--D-KDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       194 fD~V~~aa--lv---gm--~-~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ||+|+++=  +.   .+  + ..++.+++..+.+.|+|||++++-+.+
T Consensus       291 fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         291 FDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             ccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            99999763  22   11  1 357788999999999999999987743

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.43  E-value=2.4e-06  Score=77.63  Aligned_cols=117  Identities=16%  Similarity=0.212  Sum_probs=82.8

Q ss_pred             HHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC
Q 021008          112 NILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL  191 (318)
Q Consensus       112 ~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l  191 (318)
                      +.|.++....+.+||+||||+ |-=+.++|++ +|..+..--|+++....--+..+.. .|+..--.=+.-|+.+-+-.+
T Consensus        16 ~vL~~~l~~~~~~vLEiaSGt-GqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~-~~~~Nv~~P~~lDv~~~~w~~   92 (204)
T PF06080_consen   16 EVLKQYLPDSGTRVLEIASGT-GQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAE-AGLPNVRPPLALDVSAPPWPW   92 (204)
T ss_pred             HHHHHHhCccCceEEEEcCCc-cHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHh-cCCcccCCCeEeecCCCCCcc
Confidence            334444334444799999995 7888899976 5999999999999986555555554 454322222334555432222


Q ss_pred             --------CCccEEEeccccCC-ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 --------KDYEVVFLAALVGM-DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 --------~~fD~V~~aalvgm-~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                              ..||.||...++++ +-+.-..+++...+.|+|||.|++-.
T Consensus        93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG  141 (204)
T PF06080_consen   93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG  141 (204)
T ss_pred             ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence                    37999998887755 55778899999999999999998866

The function of this family is unknown.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.42  E-value=1.1e-06  Score=84.08  Aligned_cols=74  Identities=16%  Similarity=0.177  Sum_probs=60.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|++||||++.+|. .+++.   +.+|+++|+|+.+++.+++.+.. .+...+++++.+|+.+.+  +..||.|+
T Consensus        34 ~~~~~~VLEIG~G~G~LT~-~Ll~~---~~~V~avEiD~~li~~l~~~~~~-~~~~~~v~ii~~Dal~~~--~~~~d~Vv  106 (294)
T PTZ00338         34 IKPTDTVLEIGPGTGNLTE-KLLQL---AKKVIAIEIDPRMVAELKKRFQN-SPLASKLEVIEGDALKTE--FPYFDVCV  106 (294)
T ss_pred             CCCcCEEEEecCchHHHHH-HHHHh---CCcEEEEECCHHHHHHHHHHHHh-cCCCCcEEEEECCHhhhc--ccccCEEE
Confidence            3677899999999766665 55553   67899999999999999998876 566689999999998753  45789776


Q ss_pred             e
Q 021008          199 L  199 (318)
Q Consensus       199 ~  199 (318)
                      .
T Consensus       107 a  107 (294)
T PTZ00338        107 A  107 (294)
T ss_pred             e
Confidence            3

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=3e-06  Score=75.95  Aligned_cols=73  Identities=21%  Similarity=0.230  Sum_probs=57.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .-.++.|+|+|||+ |.-++-.+  ++.-.+|+|||+||++++.+++++.+   +..++.|.++|+.+..   ..||.|+
T Consensus        43 ~l~g~~V~DlG~GT-G~La~ga~--~lGa~~V~~vdiD~~a~ei~r~N~~~---l~g~v~f~~~dv~~~~---~~~dtvi  113 (198)
T COG2263          43 DLEGKTVLDLGAGT-GILAIGAA--LLGASRVLAVDIDPEALEIARANAEE---LLGDVEFVVADVSDFR---GKFDTVI  113 (198)
T ss_pred             CcCCCEEEEcCCCc-CHHHHHHH--hcCCcEEEEEecCHHHHHHHHHHHHh---hCCceEEEEcchhhcC---CccceEE
Confidence            46788999999996 55544333  22336899999999999999999997   6688999999998864   3688766


Q ss_pred             ec
Q 021008          199 LA  200 (318)
Q Consensus       199 ~a  200 (318)
                      ..
T Consensus       114 mN  115 (198)
T COG2263         114 MN  115 (198)
T ss_pred             EC
Confidence            44

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.41  E-value=1.2e-06  Score=79.06  Aligned_cols=116  Identities=22%  Similarity=0.372  Sum_probs=71.8

Q ss_pred             CCCCEEEEEccCCC--hHHHHHHHHhC---CC--CcEEEEEeCChHHHHHHHHHh-------------------hcC---
Q 021008          120 RFPTKIAFIGSGPL--PLTSIVLAINH---LT--TTCFDNYDIDPSANSKALSLV-------------------SSD---  170 (318)
Q Consensus       120 ~~~~rVL~IGsGpl--p~tai~LA~~~---~~--ga~V~gvDid~~ai~~Ar~~~-------------------~~~---  170 (318)
                      ..+-||.-.||+.+  |+|..++....   ..  ..+|+|.|||+.+++.|++-.                   ...   
T Consensus        30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~  109 (196)
T PF01739_consen   30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG  109 (196)
T ss_dssp             -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence            46789999999863  34443333331   12  479999999999999996421                   110   


Q ss_pred             ----CCCCCCeEEEEccccccCcCCCCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          171 ----PDLSTRMFFHTTDIMNVSSALKDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       171 ----~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                          ..+.++|+|...|..+.+...+.||+||.-. ++-++.+.+.++++.+++.|+|||.|++-.+..+
T Consensus       110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l  179 (196)
T PF01739_consen  110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESL  179 (196)
T ss_dssp             TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--S
T ss_pred             eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccC
Confidence                0123579999999999434556999999765 3355889999999999999999999999776544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PHA03412 putative methyltransferase; Provisional

Probab=98.39  E-value=2.8e-06  Score=78.87  Aligned_cols=97  Identities=7%  Similarity=0.055  Sum_probs=67.7

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCC--CCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHL--TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~--~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .+.+|||+|||. |.-++.+++++.  +..+|++||||+.+++.|+++..       ++.|+.+|+.+.+. .++||+|+
T Consensus        49 ~~grVLDlG~GS-G~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~~~~-~~~FDlII  119 (241)
T PHA03412         49 TSGSVVDLCAGI-GGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALTTEF-DTLFDMAI  119 (241)
T ss_pred             CCCEEEEccChH-HHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhcccc-cCCccEEE
Confidence            467999999996 555566776432  36799999999999999997643       37899999987543 34899998


Q ss_pred             ecc-cc------CC----ChhHHHHHHHHHHHhccCCeE
Q 021008          199 LAA-LV------GM----DKDEKIRVIDHLAKYMAPGAL  226 (318)
Q Consensus       199 ~aa-lv------gm----~~~~k~~vl~~l~r~LkpGg~  226 (318)
                      ..= +.      ..    ....-.++++...+.++||+.
T Consensus       120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            321 00      00    012244588888887777775

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.38  E-value=1.1e-05  Score=76.88  Aligned_cols=123  Identities=21%  Similarity=0.253  Sum_probs=93.5

Q ss_pred             HHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCC--cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE
Q 021008          104 IKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTT--TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT  181 (318)
Q Consensus       104 ~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~g--a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~  181 (318)
                      ..+++.....|..  ...|-||++|-||++=+-.=.+.+ + |.  .+|.-.|.|+..++.+++++++ .|+.+-++|.+
T Consensus       120 ~~~i~~ai~~L~~--~g~pvrIlDIAaG~GRYvlDal~~-~-~~~~~~i~LrDys~~Nv~~g~~li~~-~gL~~i~~f~~  194 (311)
T PF12147_consen  120 EELIRQAIARLRE--QGRPVRILDIAAGHGRYVLDALEK-H-PERPDSILLRDYSPINVEKGRALIAE-RGLEDIARFEQ  194 (311)
T ss_pred             HHHHHHHHHHHHh--cCCceEEEEeccCCcHHHHHHHHh-C-CCCCceEEEEeCCHHHHHHHHHHHHH-cCCccceEEEe
Confidence            4455555555532  268889999999986554333443 3 54  7899999999999999999999 99988889999


Q ss_pred             ccccccC--cCCC-CccEEEeccccCC--ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          182 TDIMNVS--SALK-DYEVVFLAALVGM--DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       182 gDa~~l~--~~l~-~fD~V~~aalvgm--~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+.+-.  ..+. ..|+++++.+..+  +...-.+.+..+++.+.|||.|++..
T Consensus       195 ~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  195 GDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             cCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            9999842  2233 5799999887743  32334557899999999999999977

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.38  E-value=2.5e-06  Score=79.16  Aligned_cols=110  Identities=15%  Similarity=0.295  Sum_probs=74.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC--------------------------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL--------------------------  173 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl--------------------------  173 (318)
                      -.|+.+|||||- -|.-++.+|+.+ ..-.|.|+|||+..|+.||+..+.-...                          
T Consensus        57 f~~~~~LDIGCN-sG~lt~~iak~F-~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~  134 (288)
T KOG2899|consen   57 FEPKQALDIGCN-SGFLTLSIAKDF-GPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD  134 (288)
T ss_pred             cCcceeEeccCC-cchhHHHHHHhh-ccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence            467899999997 577778899864 4456999999999999999987751111                          


Q ss_pred             -------CCCeEEEEcccc----c-cCcCCCCccEEEecccc---CC--ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          174 -------STRMFFHTTDIM----N-VSSALKDYEVVFLAALV---GM--DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       174 -------~~ri~f~~gDa~----~-l~~~l~~fD~V~~aalv---gm--~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                             .+++.|...+-.    | +......||+|+.-++-   ++  ..+--.++++.+.++|.|||+|++.-
T Consensus       135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence                   111222211110    1 11233489998854422   22  23556789999999999999998854

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.37  E-value=6e-07  Score=82.87  Aligned_cols=107  Identities=15%  Similarity=0.094  Sum_probs=80.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCC-CCCeEEEEccccccCc--CCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDL-STRMFFHTTDIMNVSS--ALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl-~~ri~f~~gDa~~l~~--~l~~f  194 (318)
                      +..+.||||.=.| +|+||+.-++   .|| .|..|+.||..+++|.-+==+ .++ ..+++++.||+.++..  ++.+|
T Consensus       132 ~~~G~rVLDtC~G-LGYtAi~a~~---rGA~~VitvEkdp~VLeLa~lNPwS-r~l~~~~i~iilGD~~e~V~~~~D~sf  206 (287)
T COG2521         132 VKRGERVLDTCTG-LGYTAIEALE---RGAIHVITVEKDPNVLELAKLNPWS-RELFEIAIKIILGDAYEVVKDFDDESF  206 (287)
T ss_pred             cccCCEeeeeccC-ccHHHHHHHH---cCCcEEEEEeeCCCeEEeeccCCCC-ccccccccEEecccHHHHHhcCCcccc
Confidence            3578999999887 9999999887   488 999999999999998644222 222 3469999999998754  34479


Q ss_pred             cEEEecc----ccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          195 EVVFLAA----LVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       195 D~V~~aa----lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+|+-+-    +-|  .--..+++++++|.|||||.+.---+
T Consensus       207 DaIiHDPPRfS~Ag--eLYseefY~El~RiLkrgGrlFHYvG  246 (287)
T COG2521         207 DAIIHDPPRFSLAG--ELYSEEFYRELYRILKRGGRLFHYVG  246 (287)
T ss_pred             ceEeeCCCccchhh--hHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence            9988432    111  12456899999999999999865443

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.35  E-value=5.7e-06  Score=76.89  Aligned_cols=87  Identities=21%  Similarity=0.165  Sum_probs=61.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCcc--E
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYE--V  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD--~  196 (318)
                      ..++++|||||||++.+|. .++++   +..|+++|+|+++++.+++....    ..+++++++|+.+++..  .||  .
T Consensus        27 ~~~~~~VLEiG~G~G~lt~-~L~~~---~~~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~~~--~~d~~~   96 (253)
T TIGR00755        27 VLEGDVVLEIGPGLGALTE-PLLKR---AKKVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVDLP--DFPKQL   96 (253)
T ss_pred             CCCcCEEEEeCCCCCHHHH-HHHHh---CCcEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCChh--HcCCcc
Confidence            3678999999999866665 56654   45799999999999999877643    36899999999987653  455  3


Q ss_pred             EEeccccCCChhHHHHHHHHHH
Q 021008          197 VFLAALVGMDKDEKIRVIDHLA  218 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~  218 (318)
                      ++++.+   +-..-..++..+.
T Consensus        97 ~vvsNl---Py~i~~~il~~ll  115 (253)
T TIGR00755        97 KVVSNL---PYNISSPLIFKLL  115 (253)
T ss_pred             eEEEcC---ChhhHHHHHHHHh
Confidence            444543   2223344554444

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.34  E-value=3.8e-06  Score=77.10  Aligned_cols=101  Identities=22%  Similarity=0.216  Sum_probs=73.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~~~l~~fD~V~  198 (318)
                      ..+.=||||||| -|+++-.|-.   +|-..+|+||||.|++.|.+  +.   +.  =.++.+|.- -+|+.-+.||-|+
T Consensus        49 ~~~~~iLDIGCG-sGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~--~e---~e--gdlil~DMG~GlpfrpGtFDg~I  117 (270)
T KOG1541|consen   49 PKSGLILDIGCG-SGLSGSVLSD---SGHQWIGVDISPSMLEQAVE--RE---LE--GDLILCDMGEGLPFRPGTFDGVI  117 (270)
T ss_pred             CCCcEEEEeccC-CCcchheecc---CCceEEeecCCHHHHHHHHH--hh---hh--cCeeeeecCCCCCCCCCccceEE
Confidence            357899999999 5899988865   68999999999999999986  22   11  134555654 4788888999766


Q ss_pred             -eccc---cCC------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 -LAAL---VGM------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 -~aal---vgm------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       ++|+   +..      ++..-..++..++..|++|++-++-.
T Consensus       118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf  160 (270)
T KOG1541|consen  118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF  160 (270)
T ss_pred             EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence             4442   211      12223467888999999999988754

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.32  E-value=1e-06  Score=81.56  Aligned_cols=102  Identities=10%  Similarity=0.019  Sum_probs=76.8

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      .+-++|||||+ |.+++.+|..+   -+|+|+|+++++++.|++.... .......++...+..+|....++.|+|..+.
T Consensus        34 h~~a~DvG~G~-Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~-~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq  108 (261)
T KOG3010|consen   34 HRLAWDVGTGN-GQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPV-TYCHTPSTMSSDEMVDLLGGEESVDLITAAQ  108 (261)
T ss_pred             cceEEEeccCC-CcchHHHHHhh---hhheeecCCHHHHHHhhcCCCc-ccccCCccccccccccccCCCcceeeehhhh
Confidence            34899999997 59999999743   4799999999999999887765 3334455666666666765566999998765


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCe-EEEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGA-LLMLR  230 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg-~lv~r  230 (318)
                      -+++  =+-.+++.++.|+|||.| ++++=
T Consensus       109 a~HW--Fdle~fy~~~~rvLRk~Gg~iavW  136 (261)
T KOG3010|consen  109 AVHW--FDLERFYKEAYRVLRKDGGLIAVW  136 (261)
T ss_pred             hHHh--hchHHHHHHHHHHcCCCCCEEEEE
Confidence            5544  244679999999999877 66553

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.32  E-value=3.6e-06  Score=78.63  Aligned_cols=70  Identities=19%  Similarity=0.125  Sum_probs=56.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|+|||||++.+| +.++++   +.+|++||+|+.+++.+++.+..    ..+++++++|+.+++  +..||.|+.
T Consensus        28 ~~~~~VLEIG~G~G~lt-~~L~~~---~~~v~~vEid~~~~~~l~~~~~~----~~~v~ii~~D~~~~~--~~~~d~Vv~   97 (258)
T PRK14896         28 TDGDPVLEIGPGKGALT-DELAKR---AKKVYAIELDPRLAEFLRDDEIA----AGNVEIIEGDALKVD--LPEFNKVVS   97 (258)
T ss_pred             CCcCeEEEEeCccCHHH-HHHHHh---CCEEEEEECCHHHHHHHHHHhcc----CCCEEEEEeccccCC--chhceEEEE
Confidence            57799999999975555 567764   67999999999999999987754    268999999999865  346887763

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.31  E-value=3.2e-06  Score=83.66  Aligned_cols=101  Identities=16%  Similarity=0.160  Sum_probs=78.2

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      +.+|||++||. |.=++.+|++. ....|+++|+|+++++.++++++. .++ +.+++.++|+.++......||+|+++-
T Consensus        58 ~~~vLDl~aGs-G~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~-N~~-~~~~v~~~Da~~~l~~~~~fD~V~lDP  133 (382)
T PRK04338         58 RESVLDALSAS-GIRGIRYALET-GVEKVTLNDINPDAVELIKKNLEL-NGL-ENEKVFNKDANALLHEERKFDVVDIDP  133 (382)
T ss_pred             CCEEEECCCcc-cHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH-hCC-CceEEEhhhHHHHHhhcCCCCEEEECC
Confidence            46999999996 55557777653 335899999999999999999987 666 457799999987543234799999986


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      . |.    ...+++...+.+++||.+.+..
T Consensus       134 ~-Gs----~~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        134 F-GS----PAPFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             C-CC----cHHHHHHHHHHhcCCCEEEEEe
Confidence            4 43    3567888667899999998854

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.31  E-value=2.5e-06  Score=80.30  Aligned_cols=62  Identities=16%  Similarity=0.107  Sum_probs=50.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS  189 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~  189 (318)
                      ..++.+|||||||++.+| ..++++   +.+|+|+|+|+++++.+++.+..     .+++++++|+.+++.
T Consensus        40 ~~~~~~VLEiG~G~G~lt-~~L~~~---~~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~  101 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALT-EPLLER---AAKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDL  101 (272)
T ss_pred             CCCcCeEEEeCCCccHHH-HHHHHh---CCcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCH
Confidence            367789999999986555 566664   45999999999999999886642     689999999998753

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.29  E-value=2.6e-06  Score=81.23  Aligned_cols=107  Identities=16%  Similarity=0.148  Sum_probs=78.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCC-CCeEEEEccccccCc---CCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLS-TRMFFHTTDIMNVSS---ALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~-~ri~f~~gDa~~l~~---~l~~f  194 (318)
                      ..++|||++=|=++|+|.. .|+   .|| +|++||.|..++++|+++++. -|+. ++++|+++|+.+...   .-+.|
T Consensus       122 ~~gkrvLnlFsYTGgfsv~-Aa~---gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~f  196 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVA-AAA---GGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRF  196 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHH-HHH---TTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred             cCCCceEEecCCCCHHHHH-HHH---CCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCC
Confidence            5789999999988777753 343   477 799999999999999999987 6775 789999999987322   22489


Q ss_pred             cEEEecc--cc-C-CC-hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAA--LV-G-MD-KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aa--lv-g-m~-~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+++=  +. + .+ ..++.+++..+.+.++|||.|++-+
T Consensus       197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s  238 (286)
T PF10672_consen  197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS  238 (286)
T ss_dssp             EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            9999763  22 1 11 2567789999999999999988766

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.28  E-value=4.7e-06  Score=81.75  Aligned_cols=96  Identities=10%  Similarity=0.105  Sum_probs=68.0

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC----------
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL----------  191 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l----------  191 (318)
                      +.+|||++||.+.++ +.+|+.   ..+|+|||+|+.+++.|++++.. .|+ ++++|+++|+.+....+          
T Consensus       207 ~~~vLDl~~G~G~~s-l~la~~---~~~v~~vE~~~~ai~~a~~N~~~-~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~  280 (362)
T PRK05031        207 KGDLLELYCGNGNFT-LALARN---FRRVLATEISKPSVAAAQYNIAA-NGI-DNVQIIRMSAEEFTQAMNGVREFNRLK  280 (362)
T ss_pred             CCeEEEEeccccHHH-HHHHhh---CCEEEEEECCHHHHHHHHHHHHH-hCC-CcEEEEECCHHHHHHHHhhcccccccc
Confidence            468999999965555 688874   35899999999999999999987 677 48999999998732111          


Q ss_pred             -----C-CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          192 -----K-DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       192 -----~-~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                           + .||+|+++===   ..-..++++.+.+   |++++.+
T Consensus       281 ~~~~~~~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyv  318 (362)
T PRK05031        281 GIDLKSYNFSTIFVDPPR---AGLDDETLKLVQA---YERILYI  318 (362)
T ss_pred             cccccCCCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEE
Confidence                 1 58999987511   1223455555544   5554433

>PRK04148 hypothetical protein; Provisional

Probab=98.27  E-value=9.4e-06  Score=69.18  Aligned_cols=93  Identities=19%  Similarity=0.183  Sum_probs=69.6

Q ss_pred             CCCCEEEEEccCCChH-HHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC-CccEE
Q 021008          120 RFPTKIAFIGSGPLPL-TSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK-DYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~-tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~-~fD~V  197 (318)
                      ..++||++|||| .|. .+..|++   .|..|+++|+|+++++.|++.         .++++.+|.++-..++- .+|+|
T Consensus        15 ~~~~kileIG~G-fG~~vA~~L~~---~G~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~~y~~a~li   81 (134)
T PRK04148         15 GKNKKIVELGIG-FYFKVAKKLKE---SGFDVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLEIYKNAKLI   81 (134)
T ss_pred             ccCCEEEEEEec-CCHHHHHHHHH---CCCEEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHHHHhcCCEE
Confidence            456899999999 565 6677775   499999999999999988764         25789999998665543 89999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.--    +..+-..-+.++++.+  |+-++++-
T Consensus        82 ysir----pp~el~~~~~~la~~~--~~~~~i~~  109 (134)
T PRK04148         82 YSIR----PPRDLQPFILELAKKI--NVPLIIKP  109 (134)
T ss_pred             EEeC----CCHHHHHHHHHHHHHc--CCCEEEEc
Confidence            9544    3456667777777655  45565654

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.27  E-value=1.3e-05  Score=75.77  Aligned_cols=92  Identities=15%  Similarity=0.108  Sum_probs=67.3

Q ss_pred             hhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE
Q 021008          101 SNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH  180 (318)
Q Consensus       101 ~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~  180 (318)
                      +.|+.++-.+.+...   ...+..|||+|||.+.++. .+++. +|.++|++||.|+.|+.+|.+++.+ +++.+++.++
T Consensus       131 EE~V~~Vid~~~~~~---~~~~~~ildlgtGSGaIsl-sll~~-L~~~~v~AiD~S~~Ai~La~eN~qr-~~l~g~i~v~  204 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSE---HSKHTHILDLGTGSGAISL-SLLHG-LPQCTVTAIDVSKAAIKLAKENAQR-LKLSGRIEVI  204 (328)
T ss_pred             HHHHHHHHHHHhhhh---hcccceEEEecCCccHHHH-HHHhc-CCCceEEEEeccHHHHHHHHHHHHH-HhhcCceEEE
Confidence            455555555544433   2567799999999766664 55544 5899999999999999999999999 9999999998


Q ss_pred             ----Ecccccc-CcCCCCccEEE
Q 021008          181 ----TTDIMNV-SSALKDYEVVF  198 (318)
Q Consensus       181 ----~gDa~~l-~~~l~~fD~V~  198 (318)
                          ++|..+- +.-++.+|++.
T Consensus       205 ~~~me~d~~~~~~l~~~~~dllv  227 (328)
T KOG2904|consen  205 HNIMESDASDEHPLLEGKIDLLV  227 (328)
T ss_pred             ecccccccccccccccCceeEEe
Confidence                5566542 22334677665

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=7.9e-06  Score=74.41  Aligned_cols=111  Identities=14%  Similarity=0.144  Sum_probs=81.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCC-CCcEEEEEeCChHHHHHHHHHhhcCC-------CC-CCCeEEEEccccccCcC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHL-TTTCFDNYDIDPSANSKALSLVSSDP-------DL-STRMFFHTTDIMNVSSA  190 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~-~ga~V~gvDid~~ai~~Ar~~~~~~~-------gl-~~ri~f~~gDa~~l~~~  190 (318)
                      .++.+.|+||||. |+-+-|+|+-.. +|..++|||.=++.++.+++++.++-       .+ ..+..|++||....-.+
T Consensus        81 ~pG~s~LdvGsGS-GYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e  159 (237)
T KOG1661|consen   81 QPGASFLDVGSGS-GYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE  159 (237)
T ss_pred             ccCcceeecCCCc-cHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence            7899999999996 555557775322 45556999999999999999887621       11 35789999999988767


Q ss_pred             CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc-CCCcccc
Q 021008          191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS-AHGARAF  238 (318)
Q Consensus       191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~-~~g~r~~  238 (318)
                      ..+||.|++-|-+       .++-+++...|+|||.+++-- .++..+.
T Consensus       160 ~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~~~~~~~q~  201 (237)
T KOG1661|consen  160 QAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPVGQDGGTQY  201 (237)
T ss_pred             cCCcceEEEccCc-------cccHHHHHHhhccCCeEEEeecccCceeE
Confidence            7799999987633       234445568889999887644 4455443

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.24  E-value=7.4e-06  Score=72.19  Aligned_cols=107  Identities=13%  Similarity=0.144  Sum_probs=71.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC--CCCCeEEEEccccc-c--C-cCCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD--LSTRMFFHTTDIMN-V--S-SALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g--l~~ri~f~~gDa~~-l--~-~~l~~  193 (318)
                      ..+++||++||| .|+.++.+|+. ..+++|+.-|.++ +++..+.+++. -+  ...++++..-|=.+ .  . .....
T Consensus        44 ~~~~~VLELGaG-~Gl~gi~~a~~-~~~~~Vv~TD~~~-~l~~l~~Ni~~-N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~  119 (173)
T PF10294_consen   44 FRGKRVLELGAG-TGLPGIAAAKL-FGAARVVLTDYNE-VLELLRRNIEL-NGSLLDGRVSVRPLDWGDELDSDLLEPHS  119 (173)
T ss_dssp             TTTSEEEETT-T-TSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHT-T--------EEEE--TTS-HHHHHHS-SS
T ss_pred             cCCceEEEECCc-cchhHHHHHhc-cCCceEEEeccch-hhHHHHHHHHh-ccccccccccCcEEEecCccccccccccc
Confidence            688999999999 69999999974 3688999999999 99999999886 44  56778887765432 1  0 12247


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||+|+.+-.+- +.+.-..++.-+.+.++|+|.+++-.
T Consensus       120 ~D~IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  120 FDVILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             BSEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             CCEEEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            99999766543 45677889999999999999866644

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=1.6e-06  Score=74.96  Aligned_cols=78  Identities=15%  Similarity=0.180  Sum_probs=62.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+++++++||| .|+-++..  .++..-.|.|+||||+|++.+++++..   +.-++.+.++|..++....+.||.+++
T Consensus        47 iEgkkl~DLgcg-cGmLs~a~--sm~~~e~vlGfDIdpeALEIf~rNaeE---fEvqidlLqcdildle~~~g~fDtavi  120 (185)
T KOG3420|consen   47 IEGKKLKDLGCG-CGMLSIAF--SMPKNESVLGFDIDPEALEIFTRNAEE---FEVQIDLLQCDILDLELKGGIFDTAVI  120 (185)
T ss_pred             ccCcchhhhcCc-hhhhHHHh--hcCCCceEEeeecCHHHHHHHhhchHH---hhhhhheeeeeccchhccCCeEeeEEe
Confidence            578999999999 57666433  444567899999999999999999988   556679999999998766678997765


Q ss_pred             cccc
Q 021008          200 AALV  203 (318)
Q Consensus       200 aalv  203 (318)
                      .--.
T Consensus       121 NppF  124 (185)
T KOG3420|consen  121 NPPF  124 (185)
T ss_pred             cCCC
Confidence            5433

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.19  E-value=4.2e-05  Score=72.37  Aligned_cols=115  Identities=22%  Similarity=0.324  Sum_probs=85.2

Q ss_pred             CCCEEEEEccCCC--hHHHHHHHHhCCC-----CcEEEEEeCChHHHHHHHHHh-------------------hcCC-C-
Q 021008          121 FPTKIAFIGSGPL--PLTSIVLAINHLT-----TTCFDNYDIDPSANSKALSLV-------------------SSDP-D-  172 (318)
Q Consensus       121 ~~~rVL~IGsGpl--p~tai~LA~~~~~-----ga~V~gvDid~~ai~~Ar~~~-------------------~~~~-g-  172 (318)
                      .+-||.-.||+++  |+|..++..++++     ..+|++.|||..+++.|++-.                   .+.. | 
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            4789999999864  5665555555553     589999999999999996321                   1100 1 


Q ss_pred             ------CCCCeEEEEccccccCcCCCCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          173 ------LSTRMFFHTTDIMNVSSALKDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       173 ------l~~ri~f~~gDa~~l~~~l~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                            +...|+|...|..+-+...+.||+||.-. ++-++.+.+.+++...+..|+|||.|++-....+
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~  245 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETI  245 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCccc
Confidence                  12457888888876543445899999755 3356889999999999999999999999775443

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.19  E-value=1.3e-05  Score=78.48  Aligned_cols=96  Identities=10%  Similarity=0.062  Sum_probs=68.2

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC------C----
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA------L----  191 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~------l----  191 (318)
                      +.+|||+|||. |.-++.+|+.   ...|+|||+++++++.|+++++. .|+ ++++|+.+|+.+....      +    
T Consensus       198 ~~~vlDl~~G~-G~~sl~la~~---~~~v~~vE~~~~av~~a~~n~~~-~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~  271 (353)
T TIGR02143       198 KGDLLELYCGN-GNFSLALAQN---FRRVLATEIAKPSVNAAQYNIAA-NNI-DNVQIIRMSAEEFTQAMNGVREFRRLK  271 (353)
T ss_pred             CCcEEEEeccc-cHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHH-cCC-CcEEEEEcCHHHHHHHHhhcccccccc
Confidence            45799999996 5555688874   34899999999999999999987 677 4699999999874321      1    


Q ss_pred             ------CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          192 ------KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       192 ------~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                            ..||+||++==   ......++++.+.+   |++++.+
T Consensus       272 ~~~~~~~~~d~v~lDPP---R~G~~~~~l~~l~~---~~~ivYv  309 (353)
T TIGR02143       272 GIDLKSYNCSTIFVDPP---RAGLDPDTCKLVQA---YERILYI  309 (353)
T ss_pred             ccccccCCCCEEEECCC---CCCCcHHHHHHHHc---CCcEEEE
Confidence                  13899998741   01223455555544   6555544

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.18  E-value=9.5e-06  Score=83.03  Aligned_cols=110  Identities=13%  Similarity=0.096  Sum_probs=86.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--ALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l~~fD~V  197 (318)
                      ....-+|+||||- |-..+.+|+.+ |+..++|||+....+..|.+.... .|+ .++.++++|+..+..  ..+++|-|
T Consensus       346 ~~~p~~lEIG~G~-G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~-~~l-~N~~~~~~~~~~~~~~~~~~sv~~i  421 (506)
T PRK01544        346 EKRKVFLEIGFGM-GEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGE-QNI-TNFLLFPNNLDLILNDLPNNSLDGI  421 (506)
T ss_pred             CCCceEEEECCCc-hHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH-cCC-CeEEEEcCCHHHHHHhcCcccccEE
Confidence            4567999999995 66667889876 999999999999999999888776 677 678899998854432  33479999


Q ss_pred             EeccccCCChh--HH-----HHHHHHHHHhccCCeEEEEEcCC
Q 021008          198 FLAALVGMDKD--EK-----IRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       198 ~~aalvgm~~~--~k-----~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      |+.--.+|++.  .|     ..+++.+++.|+|||.+-+++.+
T Consensus       422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~  464 (506)
T PRK01544        422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI  464 (506)
T ss_pred             EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence            98765666542  22     45788999999999999998854

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.14  E-value=9.4e-06  Score=74.38  Aligned_cols=99  Identities=15%  Similarity=0.110  Sum_probs=80.7

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      +++++|||||+ |+.++-||- ..|+.+||=+|-....+.-=+.+... +|+ ++++++++.+.+...+...||+|..-|
T Consensus        68 ~~~~~DIGSGa-GfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~e-L~L-~nv~i~~~RaE~~~~~~~~~D~vtsRA  143 (215)
T COG0357          68 AKRVLDIGSGA-GFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKE-LGL-ENVEIVHGRAEEFGQEKKQYDVVTSRA  143 (215)
T ss_pred             CCEEEEeCCCC-CCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHH-hCC-CCeEEehhhHhhcccccccCcEEEeeh
Confidence            78999999995 999999984 35899999999999999999999998 787 679999999998753322299999888


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +-     .-..+.+-+...+++||.++.
T Consensus       144 va-----~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         144 VA-----SLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             cc-----chHHHHHHHHHhcccCCcchh
Confidence            63     334566667889999887653

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.14  E-value=8.8e-06  Score=75.21  Aligned_cols=90  Identities=17%  Similarity=0.228  Sum_probs=58.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCe-EEEEcccc-----ccCcCCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRM-FFHTTDIM-----NVSSALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri-~f~~gDa~-----~l~~~l~~  193 (318)
                      ..+++|||||||++++|- ++++.  ...+|++||+++.++...  +...     .++ .+...|+.     ++..++..
T Consensus        74 ~~~~~vlDiG~gtG~~t~-~l~~~--ga~~v~avD~~~~~l~~~--l~~~-----~~v~~~~~~ni~~~~~~~~~~d~~~  143 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTD-CALQK--GAKEVYGVDVGYNQLAEK--LRQD-----ERVKVLERTNIRYVTPADIFPDFAT  143 (228)
T ss_pred             CCCCEEEEcccCCCHHHH-HHHHc--CCCEEEEEeCCHHHHHHH--HhcC-----CCeeEeecCCcccCCHhHcCCCcee
Confidence            477899999999988775 66652  235899999999887762  2221     222 12223333     33334457


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ||++|++.         ..++..+.+.|+| |.+++
T Consensus       144 ~DvsfiS~---------~~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       144 FDVSFISL---------ISILPELDLLLNP-NDLTL  169 (228)
T ss_pred             eeEEEeeh---------HhHHHHHHHHhCc-CeEEE
Confidence            89888664         2268899999999 65543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=3.9e-05  Score=75.18  Aligned_cols=111  Identities=13%  Similarity=0.213  Sum_probs=85.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC---Ccc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK---DYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~---~fD  195 (318)
                      +.++.+|||.=++|+|-|+...+.-..+|..|+++|+|+..+..-++++++ +|... +..++.|+..++....   .||
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R-lG~~n-v~~~~~d~~~~~~~~~~~~~fD  231 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR-LGVRN-VIVVNKDARRLAELLPGGEKFD  231 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH-cCCCc-eEEEecccccccccccccCcCc
Confidence            478899999999999999854433222357789999999999999999999 88865 8888888876543332   499


Q ss_pred             EEEecccc---CC---Ch---------------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALV---GM---DK---------------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalv---gm---~~---------------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .|++++=+   |+   ++               .--.++|++..+.+||||.|++..
T Consensus       232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST  288 (355)
T COG0144         232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST  288 (355)
T ss_pred             EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            99988744   22   00               113568999999999999999865

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=98.13  E-value=8.5e-06  Score=76.03  Aligned_cols=151  Identities=14%  Similarity=0.050  Sum_probs=89.4

Q ss_pred             hhHHHHHHHHHHhcCCCCCcchhhcccccHHHHHHHHHHHHHHhhHHHHH--HHHHHhhcCCCCcccccCCcChhhHHHh
Q 021008           29 KDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLES--HFSSILASFENPIANLNIFPYYSNYIKL  106 (318)
Q Consensus        29 ~~vn~lf~~Lv~~c~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ae~~lE~--~~A~~l~~~~~P~~~L~~fpY~~ny~~L  106 (318)
                      +.+++.-.+|-..|.---      ...|..+.+..++.+  +.+.+--|.  .|.+.+.+...     ++..+++++..+
T Consensus        29 ~a~k~~k~~LH~i~gay~------~~~p~~~~ll~~l~~--a~~~~D~e~~~~~~r~lL~~Ha-----ST~ERl~~Ld~f   95 (251)
T PF07091_consen   29 EAVKATKRRLHQIFGAYL------EGRPDYDALLRKLQE--ALDVGDPEAIRAWCRRLLAGHA-----STRERLPNLDEF   95 (251)
T ss_dssp             HHHHHHHHHHHCCTCCCS------SS---HHHHHHHHHH--HHCTTHHHHHHHHHHHHHHTSH-----HHHCCGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh------cCCCCHHHHHHHHHh--ccCcCCHHHHHHHHHHHHhhcc-----chhhhhhhHHHH
Confidence            446777777777664311      011334444455544  122222222  23334444322     445566677777


Q ss_pred             hHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc
Q 021008          107 SQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN  186 (318)
Q Consensus       107 ~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~  186 (318)
                      .+.+++.     .+.|.+|+|||||--|++..++..  .++++++|+|||...++..++.... +|  -+.++...|...
T Consensus        96 Y~~if~~-----~~~p~sVlDigCGlNPlalp~~~~--~~~a~Y~a~DID~~~ve~l~~~l~~-l~--~~~~~~v~Dl~~  165 (251)
T PF07091_consen   96 YDEIFGR-----IPPPDSVLDIGCGLNPLALPWMPE--APGATYIAYDIDSQLVEFLNAFLAV-LG--VPHDARVRDLLS  165 (251)
T ss_dssp             HHHHCCC-----S---SEEEEET-TTCHHHHHTTTS--STT-EEEEEESBHHHHHHHHHHHHH-TT---CEEEEEE-TTT
T ss_pred             HHHHHhc-----CCCCchhhhhhccCCceehhhccc--CCCcEEEEEeCCHHHHHHHHHHHHh-hC--CCcceeEeeeec
Confidence            7776553     256999999999999999988865  4789999999999999999999998 44  556666677765


Q ss_pred             cCcCCCCccEEEecccc
Q 021008          187 VSSALKDYEVVFLAALV  203 (318)
Q Consensus       187 l~~~l~~fD~V~~aalv  203 (318)
                      -+. -...|+.++-=++
T Consensus       166 ~~~-~~~~DlaLllK~l  181 (251)
T PF07091_consen  166 DPP-KEPADLALLLKTL  181 (251)
T ss_dssp             SHT-TSEESEEEEET-H
T ss_pred             cCC-CCCcchhhHHHHH
Confidence            321 1268988765544

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.13  E-value=3.2e-05  Score=68.59  Aligned_cols=117  Identities=14%  Similarity=0.111  Sum_probs=77.1

Q ss_pred             CCCCEEEEEccCC--ChHHHHHHHHhCCC-----CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC
Q 021008          120 RFPTKIAFIGSGP--LPLTSIVLAINHLT-----TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK  192 (318)
Q Consensus       120 ~~~~rVL~IGsGp--lp~tai~LA~~~~~-----ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~  192 (318)
                      .++..|+|-=||.  +++.+..++....|     ...+.|.|+|+++++.|++++.. .|+...+.|..+|+.+++...+
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~-ag~~~~i~~~~~D~~~l~~~~~  105 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA-AGVEDYIDFIQWDARELPLPDG  105 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH-TT-CGGEEEEE--GGGGGGTTS
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh-cccCCceEEEecchhhcccccC
Confidence            6778999866664  33334444332110     11399999999999999999999 9999999999999999985556


Q ss_pred             CccEEEeccccCCC-------hhHHHHHHHHHHHhccCCeEEEEEcCCCccc
Q 021008          193 DYEVVFLAALVGMD-------KDEKIRVIDHLAKYMAPGALLMLRSAHGARA  237 (318)
Q Consensus       193 ~fD~V~~aalvgm~-------~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~  237 (318)
                      .+|+|+++-=-|.-       ..-+.++++++.+++++..++++.....+..
T Consensus       106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~~~  157 (179)
T PF01170_consen  106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRELEK  157 (179)
T ss_dssp             BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCHHH
T ss_pred             CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence            89999976533321       1234567888999999977777766544433

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.09  E-value=2.1e-05  Score=75.71  Aligned_cols=109  Identities=11%  Similarity=0.100  Sum_probs=75.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC----CeEEEEccccc------cCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST----RMFFHTTDIMN------VSS  189 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~----ri~f~~gDa~~------l~~  189 (318)
                      .+++.++++|||-+ ...+-+-+.  .=..++|+||.+..|+.|++.-+.-.+..+    .+.|++||...      +++
T Consensus       116 ~~~~~~~~LgCGKG-GDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~  192 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKG-GDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF  192 (389)
T ss_pred             ccccccceeccCCc-ccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence            78899999999965 455555442  234799999999999999887664122222    47899999874      233


Q ss_pred             CCCCccEEEecccc--CC-ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          190 ALKDYEVVFLAALV--GM-DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalv--gm-~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++.+||+|=.+--.  .+ +.+.-...+.++++.|+|||+++-.-
T Consensus       193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi  237 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI  237 (389)
T ss_pred             CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence            33359988643212  11 23344457899999999999998855

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.07  E-value=9.6e-05  Score=57.39  Aligned_cols=102  Identities=17%  Similarity=0.214  Sum_probs=69.4

Q ss_pred             EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc--cCcCC-CCccEEEecc
Q 021008          125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN--VSSAL-KDYEVVFLAA  201 (318)
Q Consensus       125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~--l~~~l-~~fD~V~~aa  201 (318)
                      ++++|||+ |... .+++....+..++|+|+++.+++.++..... .+... +.+..+|...  ++... ..||++....
T Consensus        52 ~ld~~~g~-g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~  127 (257)
T COG0500          52 VLDIGCGT-GRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGL-VDFVVADALGGVLPFEDSASFDLVISLL  127 (257)
T ss_pred             eEEecCCc-CHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCc-eEEEEeccccCCCCCCCCCceeEEeeee
Confidence            99999996 4443 4443221225899999999999996554432 12211 7888899876  55554 3799984333


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .....  .....+.++.+.++|||.+++...
T Consensus       128 ~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~  156 (257)
T COG0500         128 VLHLL--PPAKALRELLRVLKPGGRLVLSDL  156 (257)
T ss_pred             ehhcC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence            32211  168899999999999999988774

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.03  E-value=4.7e-05  Score=67.28  Aligned_cols=106  Identities=13%  Similarity=0.205  Sum_probs=83.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-----CC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-----KD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-----~~  193 (318)
                      ...+.-||++|-|++.+|-..|++.+ +...++.|+.|++....-++....       ++|+.||+.++...+     ..
T Consensus        46 pesglpVlElGPGTGV~TkaIL~~gv-~~~~L~~iE~~~dF~~~L~~~~p~-------~~ii~gda~~l~~~l~e~~gq~  117 (194)
T COG3963          46 PESGLPVLELGPGTGVITKAILSRGV-RPESLTAIEYSPDFVCHLNQLYPG-------VNIINGDAFDLRTTLGEHKGQF  117 (194)
T ss_pred             cccCCeeEEEcCCccHhHHHHHhcCC-CccceEEEEeCHHHHHHHHHhCCC-------ccccccchhhHHHHHhhcCCCe
Confidence            46788999999999999999898765 788999999999888776665433       569999999875222     26


Q ss_pred             ccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          194 YEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       194 fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ||.|+..- +...+...+.++++.+..++++||.++--..
T Consensus       118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY  157 (194)
T COG3963         118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY  157 (194)
T ss_pred             eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            89888442 2233667889999999999999999886553

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.01  E-value=1.9e-05  Score=75.72  Aligned_cols=80  Identities=14%  Similarity=-0.016  Sum_probs=62.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC----CCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL----KDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l----~~f  194 (318)
                      +.++..++|.+||.+|.|.. +++.+.++++|+|+|+|++|++.|++....    .+|++++++|..++...+    .++
T Consensus        17 ~~pg~~vlD~TlG~GGhS~~-il~~~~~~g~VigiD~D~~al~~ak~~L~~----~~ri~~i~~~f~~l~~~l~~~~~~v   91 (296)
T PRK00050         17 IKPDGIYVDGTFGGGGHSRA-ILERLGPKGRLIAIDRDPDAIAAAKDRLKP----FGRFTLVHGNFSNLKEVLAEGLGKV   91 (296)
T ss_pred             CCCCCEEEEeCcCChHHHHH-HHHhCCCCCEEEEEcCCHHHHHHHHHhhcc----CCcEEEEeCCHHHHHHHHHcCCCcc
Confidence            35678999999998777754 555543478999999999999999987643    479999999998754222    279


Q ss_pred             cEEEecccc
Q 021008          195 EVVFLAALV  203 (318)
Q Consensus       195 D~V~~aalv  203 (318)
                      |.|+++--|
T Consensus        92 DgIl~DLGv  100 (296)
T PRK00050         92 DGILLDLGV  100 (296)
T ss_pred             CEEEECCCc
Confidence            999987655

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.98  E-value=3.3e-05  Score=79.06  Aligned_cols=106  Identities=19%  Similarity=0.247  Sum_probs=71.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc------ccccCc----
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD------IMNVSS----  189 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD------a~~l~~----  189 (318)
                      .+|.+|+.+|+|+.|+.++..|+.+  |++|+++|++++..+.++++=.. .   ..+.....+      +.++..    
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~-~---v~i~~~e~~~~~~gya~~~s~~~~~  236 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAE-F---LELDFEEEGGSGDGYAKVMSEEFIK  236 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCe-E---EEeccccccccccchhhhcchhHHH
Confidence            5799999999999999999999874  89999999999999988764211 0   001110000      111111    


Q ss_pred             --------CCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          190 --------ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       190 --------~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                              ..+++|+|+..+.+.-. ....-+.++..+.|||||+++.-..
T Consensus       237 ~~~~~~~~~~~gaDVVIetag~pg~-~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        237 AEMALFAEQAKEVDIIITTALIPGK-PAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHHhccCCCCEEEECCCCCcc-cCcchHHHHHHHhcCCCCEEEEEcc
Confidence                    12479999988875211 1122345899999999999877654

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.97  E-value=6.1e-05  Score=71.05  Aligned_cols=108  Identities=24%  Similarity=0.328  Sum_probs=67.2

Q ss_pred             CCCEEEEEccCCChHHH--HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--------C
Q 021008          121 FPTKIAFIGSGPLPLTS--IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--------A  190 (318)
Q Consensus       121 ~~~rVL~IGsGplp~ta--i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--------~  190 (318)
                      .=++.|||||| +|...  =-.|++..|+++|+-||+||-+++.||.+... . -..+..++.+|+.+...        .
T Consensus        68 GIrQFLDlGsG-lPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~-~-~~g~t~~v~aD~r~p~~iL~~p~~~~  144 (267)
T PF04672_consen   68 GIRQFLDLGSG-LPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD-N-PRGRTAYVQADLRDPEAILAHPEVRG  144 (267)
T ss_dssp             ---EEEEET---S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT---TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred             CcceEEEcccC-CCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC-C-CCccEEEEeCCCCCHHHHhcCHHHHh
Confidence            44899999999 88543  23455556999999999999999999999875 1 12359999999997321        1


Q ss_pred             CCCcc---EEEecc-ccCC-ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 LKDYE---VVFLAA-LVGM-DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 l~~fD---~V~~aa-lvgm-~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +=.||   .|.+.+ |..+ +.++..++++.+...|.||..|++..
T Consensus       145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish  190 (267)
T PF04672_consen  145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH  190 (267)
T ss_dssp             C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred             cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence            11233   333333 3333 44788899999999999999999865

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.97  E-value=6.9e-06  Score=75.32  Aligned_cols=105  Identities=24%  Similarity=0.220  Sum_probs=74.5

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC----CccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK----DYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~----~fD~  196 (318)
                      ....|++.=||.+|-| +..|.   .++.|++|||||.-|+.|+.+++- .|..+||+|++||..++...++    -+|+
T Consensus        94 ~~~~iidaf~g~gGnt-iqfa~---~~~~VisIdiDPikIa~AkhNaei-YGI~~rItFI~GD~ld~~~~lq~~K~~~~~  168 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNT-IQFAL---QGPYVIAIDIDPVKIACARHNAEV-YGVPDRITFICGDFLDLASKLKADKIKYDC  168 (263)
T ss_pred             CcchhhhhhhcCCchH-HHHHH---hCCeEEEEeccHHHHHHHhcccee-ecCCceeEEEechHHHHHHHHhhhhheeee
Confidence            6678888888865555 45554   389999999999999999999999 9999999999999998643332    3567


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||.+---|-+---+..+ -.+..++.|-|.-++|.
T Consensus       169 vf~sppwggp~y~~~~~-~DL~~~~~p~~~~~fk~  202 (263)
T KOG2730|consen  169 VFLSPPWGGPSYLRADV-YDLETHLKPMGTKIFKS  202 (263)
T ss_pred             eecCCCCCCcchhhhhh-hhhhhhcchhHHHHHHh
Confidence            77665333232223333 34556666665555554

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.97  E-value=0.0001  Score=69.78  Aligned_cols=106  Identities=16%  Similarity=0.165  Sum_probs=69.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCC-CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLT-TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~-ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      -.|++|||+||||  .|+++.+...++ --++++||.|+.+++.|+.+++. ........+......+. ......|+|+
T Consensus        32 f~P~~vLD~GsGp--Gta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~-~~~~~~DLvi  107 (274)
T PF09243_consen   32 FRPRSVLDFGSGP--GTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA-GPNNRNAEWRRVLYRDF-LPFPPDDLVI  107 (274)
T ss_pred             CCCceEEEecCCh--HHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc-ccccccchhhhhhhccc-ccCCCCcEEE
Confidence            4789999999996  356666655444 34799999999999999999887 32212221111111111 1223459998


Q ss_pred             ecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+..+ .++.+.+.++++.+.+.+++  .||+-+
T Consensus       108 ~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVE  139 (274)
T PF09243_consen  108 ASYVLNELPSAARAELVRSLWNKTAP--VLVLVE  139 (274)
T ss_pred             EehhhhcCCchHHHHHHHHHHHhccC--cEEEEc
Confidence            77644 44447889999999988877  444433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.94  E-value=7.2e-05  Score=72.96  Aligned_cols=115  Identities=12%  Similarity=0.069  Sum_probs=90.3

Q ss_pred             hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc
Q 021008          106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI  184 (318)
Q Consensus       106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa  184 (318)
                      -...|..++.... ..|.+|+|.=+|-+|+| +-+|+.   |.. |+++||+|.|++..+++++. -++..++..++||+
T Consensus       174 rl~~ER~Rva~~v-~~GE~V~DmFAGVGpfs-i~~Ak~---g~~~V~A~diNP~A~~~L~eNi~L-N~v~~~v~~i~gD~  247 (341)
T COG2520         174 RLSTERARVAELV-KEGETVLDMFAGVGPFS-IPIAKK---GRPKVYAIDINPDAVEYLKENIRL-NKVEGRVEPILGDA  247 (341)
T ss_pred             CchHHHHHHHhhh-cCCCEEEEccCCcccch-hhhhhc---CCceEEEEecCHHHHHHHHHHHHh-cCccceeeEEeccH
Confidence            3455666555433 56999999988866666 667762   444 99999999999999999997 78888999999999


Q ss_pred             cccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          185 MNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       185 ~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .++......||.|++-..     ..-.+++....+.+++||++-+..
T Consensus       248 rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~  289 (341)
T COG2520         248 REVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYE  289 (341)
T ss_pred             HHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEe
Confidence            999877788999996652     233567777888999999987765

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.94  E-value=1.4e-05  Score=71.43  Aligned_cols=108  Identities=11%  Similarity=0.092  Sum_probs=77.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc----CCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS----ALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~----~l~~f  194 (318)
                      ..+.++||+=||.+.+..-.|.+    | .+|+.||.|+.++...+++++. .+..++++++.+|+.....    ....|
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSR----GA~~v~fVE~~~~a~~~i~~N~~~-l~~~~~~~v~~~d~~~~l~~~~~~~~~f  115 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSR----GAKSVVFVEKNRKAIKIIKKNLEK-LGLEDKIRVIKGDAFKFLLKLAKKGEKF  115 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHT----T-SEEEEEES-HHHHHHHHHHHHH-HT-GGGEEEEESSHHHHHHHHHHCTS-E
T ss_pred             cCCCeEEEcCCccCccHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHH-hCCCcceeeeccCHHHHHHhhcccCCCc
Confidence            46899999977765555545554    5 4899999999999999999999 8888899999999875321    23489


Q ss_pred             cEEEeccccCCChhH-HHHHHHHHH--HhccCCeEEEEEcCCC
Q 021008          195 EVVFLAALVGMDKDE-KIRVIDHLA--KYMAPGALLMLRSAHG  234 (318)
Q Consensus       195 D~V~~aalvgm~~~~-k~~vl~~l~--r~LkpGg~lv~r~~~g  234 (318)
                      |+||++=--  .... ..++++.+.  ..|+++|.+++.....
T Consensus       116 DiIflDPPY--~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  116 DIIFLDPPY--AKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             EEEEE--ST--TSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             eEEEECCCc--ccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            999988522  2344 377888887  7899999999987443

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.93  E-value=4.6e-05  Score=75.26  Aligned_cols=100  Identities=19%  Similarity=0.168  Sum_probs=78.9

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEEec
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~~a  200 (318)
                      -+|||..||. |.=++.++++. +| ..|+++|+|+++++..+++++. .++ .++.++++|+..+.... ..||+|+++
T Consensus        46 ~~vLD~faGs-G~rgir~a~e~-~ga~~Vv~nD~n~~Av~~i~~N~~~-N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlD  121 (374)
T TIGR00308        46 INIADALSAS-GIRAIRYAHEI-EGVREVFANDINPKAVESIKNNVEY-NSV-ENIEVPNEDAANVLRYRNRKFHVIDID  121 (374)
T ss_pred             CEEEECCCch-hHHHHHHHhhC-CCCCEEEEEeCCHHHHHHHHHHHHH-hCC-CcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence            5899999996 55556677642 34 5899999999999999999986 555 36899999998765433 379999999


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -+ |    ....+++.+.+.+++||.|.+..
T Consensus       122 Pf-G----s~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       122 PF-G----TPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             CC-C----CcHHHHHHHHHhcccCCEEEEEe
Confidence            73 4    23468888999999999998875

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.93  E-value=4.3e-05  Score=69.99  Aligned_cols=106  Identities=9%  Similarity=0.112  Sum_probs=74.2

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      .-.+.||.|+|-+=.|.-+|...   =-+|+-||.++..++.|++....  +...-.++.+.-..+...+.+.||+||++
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~---f~~VDlVEp~~~Fl~~a~~~l~~--~~~~v~~~~~~gLQ~f~P~~~~YDlIW~Q  129 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV---FDEVDLVEPVEKFLEQAKEYLGK--DNPRVGEFYCVGLQDFTPEEGKYDLIWIQ  129 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC----SEEEEEES-HHHHHHHHHHTCC--GGCCEEEEEES-GGG----TT-EEEEEEE
T ss_pred             CcceEEecccccchhHHHHHHHh---cCEeEEeccCHHHHHHHHHHhcc--cCCCcceEEecCHhhccCCCCcEeEEEeh
Confidence            45799999999555554444431   35899999999999999987654  23344677777777765555689999998


Q ss_pred             ccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          201 ALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       201 alv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+ +++.++=.++|..+...|+|||++++.+
T Consensus       130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE  161 (218)
T PF05891_consen  130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE  161 (218)
T ss_dssp             S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence            755 5577899999999999999999999988

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.91  E-value=0.00013  Score=71.38  Aligned_cols=113  Identities=14%  Similarity=0.128  Sum_probs=84.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHH--HhhcC---CCCCCCeEEEEccccccCcCCC-
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALS--LVSSD---PDLSTRMFFHTTDIMNVSSALK-  192 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~--~~~~~---~gl~~ri~f~~gDa~~l~~~l~-  192 (318)
                      ...++||.+|.| =|+++.-+-+  +|+ .+||-||.||++++.+++  ..++.   .=.+.|++++..|+.+....-+ 
T Consensus       288 ~~a~~vLvlGGG-DGLAlRellk--yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~  364 (508)
T COG4262         288 RGARSVLVLGGG-DGLALRELLK--YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD  364 (508)
T ss_pred             cccceEEEEcCC-chHHHHHHHh--CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence            455899999999 5899988875  484 689999999999999983  23320   1124799999999998644333 


Q ss_pred             CccEEEeccccC----CChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          193 DYEVVFLAALVG----MDKDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       193 ~fD~V~~aalvg----m~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                      .||+|+++---+    +.+--..+++..+.++++++|.+++-.++..
T Consensus       365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y  411 (508)
T COG4262         365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY  411 (508)
T ss_pred             cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence            899999875321    1123346788999999999999999876543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.90  E-value=4.6e-05  Score=74.24  Aligned_cols=97  Identities=15%  Similarity=0.096  Sum_probs=71.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccccCcCCC-CccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMNVSSALK-DYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~l~~~l~-~fD~  196 (318)
                      ..++++|+.+|.|.+|..++.+|+..  |++|+++|++++-.+.|+++-+.        .++.+ |.... .... .||+
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd--------~~i~~~~~~~~-~~~~~~~d~  232 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGAD--------HVINSSDSDAL-EAVKEIADA  232 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCc--------EEEEcCCchhh-HHhHhhCcE
Confidence            47899999999999999999999864  89999999999999999887543        22322 22111 1222 3999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      |+..+      .  ..-+....+.||+||++++-...+
T Consensus       233 ii~tv------~--~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         233 IIDTV------G--PATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             EEECC------C--hhhHHHHHHHHhcCCEEEEECCCC
Confidence            98665      1  334555668999999999887553

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.86  E-value=6.3e-05  Score=68.46  Aligned_cols=106  Identities=19%  Similarity=0.183  Sum_probs=64.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhc------CCCC-CCCeEEEEccccccC--
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSS------DPDL-STRMFFHTTDIMNVS--  188 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~------~~gl-~~ri~f~~gDa~~l~--  188 (318)
                      ..+.+..+||||| .|-..+..|..  .+++ ..||++.+...+.|+...+.      ..|. ..++++..||..+.+  
T Consensus        40 l~~~dvF~DlGSG-~G~~v~~aal~--~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~  116 (205)
T PF08123_consen   40 LTPDDVFYDLGSG-VGNVVFQAALQ--TGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV  116 (205)
T ss_dssp             --TT-EEEEES-T-TSHHHHHHHHH--H--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred             CCCCCEEEECCCC-CCHHHHHHHHH--cCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence            4678999999999 67777666654  4776 99999999999988654332      1343 468899999987642  


Q ss_pred             -cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          189 -SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       189 -~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                       ..+.+-|+||+..++- +.+-+. -+.+....||||.+++.
T Consensus       117 ~~~~s~AdvVf~Nn~~F-~~~l~~-~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  117 KDIWSDADVVFVNNTCF-DPDLNL-ALAELLLELKPGARIIS  156 (205)
T ss_dssp             HHHGHC-SEEEE--TTT--HHHHH-HHHHHHTTS-TT-EEEE
T ss_pred             hhhhcCCCEEEEecccc-CHHHHH-HHHHHHhcCCCCCEEEE
Confidence             1234679999987652 444444 44777789999999875

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.83  E-value=0.00017  Score=68.07  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=85.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC--CccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK--DYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~--~fD~  196 (318)
                      ..++.+|++-|+|.+++|- .+|+...|-.++..+|+.+...+.|++-++. -|+++.+++.+-|+...-+..+  .+|.
T Consensus       103 i~PGsvV~EsGTGSGSlSh-aiaraV~ptGhl~tfefH~~Ra~ka~eeFr~-hgi~~~vt~~hrDVc~~GF~~ks~~aDa  180 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSH-AIARAVAPTGHLYTFEFHETRAEKALEEFRE-HGIGDNVTVTHRDVCGSGFLIKSLKADA  180 (314)
T ss_pred             CCCCCEEEecCCCcchHHH-HHHHhhCcCcceEEEEecHHHHHHHHHHHHH-hCCCcceEEEEeecccCCccccccccce
Confidence            4899999999999888875 6787777889999999999999999999999 8999999999999987655553  7999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ||++-.      .....+-+.++.+|-+|.-++
T Consensus       181 VFLDlP------aPw~AiPha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  181 VFLDLP------APWEAIPHAAKILKDEGGRLC  207 (314)
T ss_pred             EEEcCC------ChhhhhhhhHHHhhhcCceEE
Confidence            998863      334567788889998884333

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.82  E-value=0.00018  Score=64.53  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=79.1

Q ss_pred             CCCCEEEEE--ccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC---Cc
Q 021008          120 RFPTKIAFI--GSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK---DY  194 (318)
Q Consensus       120 ~~~~rVL~I--GsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~---~f  194 (318)
                      ..+.++||+  |||.+|+-|  +.+   -..+++-||.|..+....+++++. +++..+.+++..|+........   .|
T Consensus        42 i~g~~~LDlFAGSGaLGlEA--lSR---GA~~~~~vE~~~~a~~~l~~N~~~-l~~~~~~~~~~~da~~~L~~~~~~~~F  115 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEA--LSR---GAARVVFVEKDRKAVKILKENLKA-LGLEGEARVLRNDALRALKQLGTREPF  115 (187)
T ss_pred             cCCCEEEEecCCccHhHHHH--HhC---CCceEEEEecCHHHHHHHHHHHHH-hCCccceEEEeecHHHHHHhcCCCCcc
Confidence            467899987  666555554  443   245899999999999999999999 8888999999999996432222   49


Q ss_pred             cEEEeccccCCChhHHHHHHHH--HHHhccCCeEEEEEcCCC
Q 021008          195 EVVFLAALVGMDKDEKIRVIDH--LAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~--l~r~LkpGg~lv~r~~~g  234 (318)
                      |+||++=--+....++...+..  -...|+|||.+++.....
T Consensus       116 DlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         116 DLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             cEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            9999885332222333444444  345699999999987543

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=8.2e-05  Score=74.80  Aligned_cols=99  Identities=16%  Similarity=0.169  Sum_probs=77.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC---CCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL---KDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l---~~fD~  196 (318)
                      .++++|+|.=|| .|.-++.||+   ...+|+|+|+++++++.|+++++. .|+.+ ++|+.+|+.+....+   ..||.
T Consensus       292 ~~~~~vlDlYCG-vG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~-n~i~N-~~f~~~~ae~~~~~~~~~~~~d~  365 (432)
T COG2265         292 AGGERVLDLYCG-VGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAA-NGIDN-VEFIAGDAEEFTPAWWEGYKPDV  365 (432)
T ss_pred             cCCCEEEEeccC-CChhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHH-cCCCc-EEEEeCCHHHHhhhccccCCCCE
Confidence            577899999999 5677788996   488999999999999999999998 88866 999999999876655   37899


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      |+++=-=   +..-..+++.+. .++|-.++.
T Consensus       366 VvvDPPR---~G~~~~~lk~l~-~~~p~~IvY  393 (432)
T COG2265         366 VVVDPPR---AGADREVLKQLA-KLKPKRIVY  393 (432)
T ss_pred             EEECCCC---CCCCHHHHHHHH-hcCCCcEEE
Confidence            9988511   122245777776 466655443

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.79  E-value=0.00013  Score=70.92  Aligned_cols=103  Identities=13%  Similarity=0.133  Sum_probs=72.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.++.|||||||+ |.-+++-|+.  ...+|++||-|.-+ +.|++++.. -++++.|+++.|.+.++.-+....|+++-
T Consensus        59 f~dK~VlDVGcGt-GILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~-N~~~~ii~vi~gkvEdi~LP~eKVDiIvS  133 (346)
T KOG1499|consen   59 FKDKTVLDVGCGT-GILSMFAAKA--GARKVYAVEASSIA-DFARKIVKD-NGLEDVITVIKGKVEDIELPVEKVDIIVS  133 (346)
T ss_pred             cCCCEEEEcCCCc-cHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHh-cCccceEEEeecceEEEecCccceeEEee
Confidence            4789999999995 6777766763  24579999999877 999999998 89999999999999986333458998875


Q ss_pred             ccccCCCh--h-HHHHHHHHHHHhccCCeEEE
Q 021008          200 AALVGMDK--D-EKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       200 aalvgm~~--~-~k~~vl~~l~r~LkpGg~lv  228 (318)
                      ..+ |.-.  + .-..++-.==+.|+|||.+.
T Consensus       134 EWM-Gy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  134 EWM-GYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hhh-hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            441 1000  0 01112222235688888764

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.78  E-value=0.00016  Score=76.93  Aligned_cols=84  Identities=19%  Similarity=0.232  Sum_probs=61.3

Q ss_pred             cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--CCccEEEeccccCC---ChhHHHHHHHHHHHhcc
Q 021008          148 TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--KDYEVVFLAALVGM---DKDEKIRVIDHLAKYMA  222 (318)
Q Consensus       148 a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--~~fD~V~~aalvgm---~~~~k~~vl~~l~r~Lk  222 (318)
                      ..++|+|+|+++++.|++++.. .|+.+++.|..+|+.+++...  +.||+|+..-=-|.   ...+-.+++..+.+.++
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~-~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk  335 (702)
T PRK11783        257 SKFYGSDIDPRVIQAARKNARR-AGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK  335 (702)
T ss_pred             ceEEEEECCHHHHHHHHHHHHH-cCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence            3699999999999999999999 999999999999999876443  36999886531111   22333445555555554


Q ss_pred             ---CCeEEEEEcC
Q 021008          223 ---PGALLMLRSA  232 (318)
Q Consensus       223 ---pGg~lv~r~~  232 (318)
                         ||+.+.+-++
T Consensus       336 ~~~~g~~~~llt~  348 (702)
T PRK11783        336 QQFGGWNAALFSS  348 (702)
T ss_pred             HhCCCCeEEEEeC
Confidence               8988766553

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.77  E-value=5.5e-05  Score=73.71  Aligned_cols=102  Identities=19%  Similarity=0.180  Sum_probs=71.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccc-cCc-CCC-Ccc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMN-VSS-ALK-DYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~-l~~-~l~-~fD  195 (318)
                      .++.+|+.+|+||+|+-++.+|+.+ .-++|+.+|++++.++.|++....     +.+..... +... ... ..+ .||
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g~-----~~~~~~~~~~~~~~~~~~t~g~g~D  240 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGGA-----DVVVNPSEDDAGAEILELTGGRGAD  240 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCCC-----eEeecCccccHHHHHHHHhCCCCCC
Confidence            4445999999999999999999864 457899999999999999986554     22222212 1111 101 112 699


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      +||-++-       ....++...+.++|||++++-.-.+
T Consensus       241 ~vie~~G-------~~~~~~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         241 VVIEAVG-------SPPALDQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             EEEECCC-------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence            9996653       2337778889999999999887544

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=97.77  E-value=0.00013  Score=70.04  Aligned_cols=98  Identities=12%  Similarity=0.124  Sum_probs=67.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++++|+.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.++++     |...-+.....+..++....+.||+||
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~--~G~~~Vi~~~~~~~~~~~a~~l-----Ga~~vi~~~~~~~~~~~~~~g~~D~vi  240 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKT--LGAAEIVCADVSPRSLSLAREM-----GADKLVNPQNDDLDHYKAEKGYFDVSF  240 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEEeCCHHHHHHHHHc-----CCcEEecCCcccHHHHhccCCCCCEEE
Confidence            568999999999999999999986  487 699999999998888764     221111111112222222223599988


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -..  |    . ...++...+.|+|||+++.-.
T Consensus       241 d~~--G----~-~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        241 EVS--G----H-PSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             ECC--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence            543  2    1 235667788999999998765

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.76  E-value=0.0002  Score=65.18  Aligned_cols=101  Identities=21%  Similarity=0.252  Sum_probs=72.9

Q ss_pred             EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccC
Q 021008          125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVG  204 (318)
Q Consensus       125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvg  204 (318)
                      |+||||-. |+-.+.|.++. .-.+++++|+++.-++.|++.++. .|+.++++++.||+.+....-...|.|+++.+ |
T Consensus         1 vaDIGtDH-gyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM-G   76 (205)
T PF04816_consen    1 VADIGTDH-GYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM-G   76 (205)
T ss_dssp             EEEET-ST-THHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGGG--GGG---EEEEEEE--
T ss_pred             Cceeccch-hHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCcccccCCCCCCCEEEEecC-C
Confidence            78999997 77778888752 345799999999999999999999 99999999999999875332224899998874 3


Q ss_pred             CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          205 MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       205 m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                        -.--.++++.....++....|++-.
T Consensus        77 --G~lI~~ILe~~~~~~~~~~~lILqP  101 (205)
T PF04816_consen   77 --GELIIEILEAGPEKLSSAKRLILQP  101 (205)
T ss_dssp             --HHHHHHHHHHTGGGGTT--EEEEEE
T ss_pred             --HHHHHHHHHhhHHHhccCCeEEEeC
Confidence              2456778888877777766777744

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.76  E-value=7.8e-05  Score=76.31  Aligned_cols=102  Identities=17%  Similarity=0.250  Sum_probs=70.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE------ccccc-------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT------TDIMN-------  186 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~------gDa~~-------  186 (318)
                      .++.||+.+|+|+.|+.++.+|+.+  |+.|+.+|.+++..+.++++-.. .   -.+.+..      |.+..       
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~-~---v~v~~~e~g~~~~gYa~~~s~~~~~  235 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAE-F---LELDFKEEGGSGDGYAKVMSEEFIA  235 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCe-E---EeccccccccccccceeecCHHHHH
Confidence            4689999999999999999999864  89999999999988887763211 0   0001000      00100       


Q ss_pred             -----cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          187 -----VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       187 -----l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                           ++....++|+||..+++.-.+.+ .=+.++..+.||||++++
T Consensus       236 ~~~~~~~e~~~~~DIVI~TalipG~~aP-~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       236 AEMELFAAQAKEVDIIITTALIPGKPAP-KLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             HHHHHHHHHhCCCCEEEECcccCCCCCC-eeehHHHHhhCCCCCEEE
Confidence                 22234579999999988432222 237788889999999876

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.76  E-value=7e-05  Score=73.78  Aligned_cols=111  Identities=17%  Similarity=0.189  Sum_probs=77.6

Q ss_pred             CCCCEEEE--EccCCChHHHHHHHHhCCCC----------------------------c-------EEEEEeCChHHHHH
Q 021008          120 RFPTKIAF--IGSGPLPLTSIVLAINHLTT----------------------------T-------CFDNYDIDPSANSK  162 (318)
Q Consensus       120 ~~~~rVL~--IGsGplp~tai~LA~~~~~g----------------------------a-------~V~gvDid~~ai~~  162 (318)
                      .++..++|  -|||+++.-+.+++..-.||                            +       .+.|+|||+.+++.
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~  269 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG  269 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence            44456765  57777777777776432221                            1       37899999999999


Q ss_pred             HHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCCChh-------HHHHHHHHHHHhccCCeEEEEEc
Q 021008          163 ALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKD-------EKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       163 Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~~~-------~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+.++++ +|+++.|+|.++|+.++......+|+|+..---|.-.+       -+..+...+.+.++-.++.++-+
T Consensus       270 Ak~NA~~-AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         270 AKANARA-AGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHHHh-cCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            9999999 99999999999999999876678999885432221111       23344445556666666666655

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.75  E-value=0.00012  Score=69.52  Aligned_cols=110  Identities=16%  Similarity=0.194  Sum_probs=84.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCC-CccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALK-DYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~-~fD~  196 (318)
                      +.++.+|||.-+||+|-|+ .+|+.+.....|++.|+++..+..-++..++ .|. ..+.....|+..... ... .||.
T Consensus        83 ~~~~~~VLD~CAapGgKt~-~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r-~g~-~~v~~~~~D~~~~~~~~~~~~fd~  159 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTT-HLAELMGNKGEIVANDISPKRLKRLKENLKR-LGV-FNVIVINADARKLDPKKPESKFDR  159 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHH-HHHHHTTTTSEEEEEESSHHHHHHHHHHHHH-TT--SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred             ccccccccccccCCCCcee-eeeecccchhHHHHhccCHHHHHHHHHHHHh-cCC-ceEEEEeeccccccccccccccch
Confidence            4788999999999999987 5666654478999999999999999999998 887 567777799887621 222 5999


Q ss_pred             EEecccc---CC---Chh---------------HHHHHHHHHHHhc----cCCeEEEEEc
Q 021008          197 VFLAALV---GM---DKD---------------EKIRVIDHLAKYM----APGALLMLRS  231 (318)
Q Consensus       197 V~~aalv---gm---~~~---------------~k~~vl~~l~r~L----kpGg~lv~r~  231 (318)
                      |++++-.   |.   +.+               -..++|++.++.+    ||||++++-.
T Consensus       160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT  219 (283)
T PF01189_consen  160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST  219 (283)
T ss_dssp             EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred             hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence            9987743   11   111               1346889999999    9999999865

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.74  E-value=1.2e-05  Score=74.21  Aligned_cols=100  Identities=17%  Similarity=0.138  Sum_probs=69.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~V  197 (318)
                      .+=+++||+|||+ |++..-|-.   .-.+.+|||||..|++.|.+.     |+=+  +..++|+....  .+...||+|
T Consensus       124 g~F~~~lDLGCGT-GL~G~~lR~---~a~~ltGvDiS~nMl~kA~eK-----g~YD--~L~~Aea~~Fl~~~~~er~DLi  192 (287)
T COG4976         124 GPFRRMLDLGCGT-GLTGEALRD---MADRLTGVDISENMLAKAHEK-----GLYD--TLYVAEAVLFLEDLTQERFDLI  192 (287)
T ss_pred             CccceeeecccCc-CcccHhHHH---HHhhccCCchhHHHHHHHHhc-----cchH--HHHHHHHHHHhhhccCCcccch
Confidence            3458999999995 888876643   256899999999999999753     1111  23345554322  223389988


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+- |-+-...-..++.-.+..|+|||.+.+..
T Consensus       193 ~AaD-Vl~YlG~Le~~~~~aa~~L~~gGlfaFSv  225 (287)
T COG4976         193 VAAD-VLPYLGALEGLFAGAAGLLAPGGLFAFSV  225 (287)
T ss_pred             hhhh-HHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence            7433 21223566778999999999999998876

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.73  E-value=0.00021  Score=68.53  Aligned_cols=120  Identities=20%  Similarity=0.172  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhhcCCCCcccccCC-cChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEE
Q 021008           74 GLLESHFSSILASFENPIANLNIF-PYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDN  152 (318)
Q Consensus        74 ~~lE~~~A~~l~~~~~P~~~L~~f-pY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~g  152 (318)
                      ++|-.+|.-..-  +-|-++|-.- |-.-||+..+.--....... .+..-++||||+|+-..=.+.-++.|  |++|+|
T Consensus        57 aLLk~dfgl~~w--diP~~~LcP~iP~R~nYi~~i~DlL~~~~~~-~~~~v~glDIGTGAscIYpLLg~~~~--~W~fva  131 (299)
T PF05971_consen   57 ALLKHDFGLDVW--DIPEGRLCPPIPNRLNYIHWIADLLASSNPG-IPEKVRGLDIGTGASCIYPLLGAKLY--GWSFVA  131 (299)
T ss_dssp             HHHHHHH----------TTS----HHHHHHHHHHHHHHHT--TCG-CS---EEEEES-TTTTHHHHHHHHHH----EEEE
T ss_pred             HHHHHhcCCccc--cCCCCCcCCCCchhHHHHHHHHHHhhccccc-cccceEeecCCccHHHHHHHHhhhhc--CCeEEE
Confidence            444455544331  3344444432 44457877665432221100 12357999999998777667667654  999999


Q ss_pred             EeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccC----cCCCCccEEE
Q 021008          153 YDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVS----SALKDYEVVF  198 (318)
Q Consensus       153 vDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~----~~l~~fD~V~  198 (318)
                      .|||+.+++.|++++++-.++.++|+++...-. .+.    .....||+.+
T Consensus       132 TdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm  182 (299)
T PF05971_consen  132 TDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM  182 (299)
T ss_dssp             EES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred             ecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence            999999999999999983489999999866432 221    1113688776

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.73  E-value=6.6e-05  Score=65.87  Aligned_cols=99  Identities=14%  Similarity=0.155  Sum_probs=61.1

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc------CcC----
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV------SSA----  190 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l------~~~----  190 (318)
                      .+.+|+|+||+|+|+|...+-+ ..+.++|+|||+.+.         .    ....+.++++|..+.      ...    
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~-~~~~~~v~avDl~~~---------~----~~~~~~~i~~d~~~~~~~~~i~~~~~~~   88 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQR-GGPAGRVVAVDLGPM---------D----PLQNVSFIQGDITNPENIKDIRKLLPES   88 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTS-TTTEEEEEEEESSST---------G----S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred             cccEEEEcCCcccceeeeeeec-ccccceEEEEecccc---------c----cccceeeeecccchhhHHHhhhhhcccc
Confidence            5699999999999999865532 124699999999986         1    114566667776542      111    


Q ss_pred             CCCccEEEecccc---CC---C----hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          191 LKDYEVVFLAALV---GM---D----KDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       191 l~~fD~V~~aalv---gm---~----~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ...||+|+.+.-.   |.   +    ..--...+.-..+.|+|||.+++.-.+
T Consensus        89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~  141 (181)
T PF01728_consen   89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK  141 (181)
T ss_dssp             TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred             ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence            1479999977621   11   1    112223344445778999998887644

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.70  E-value=0.00068  Score=66.13  Aligned_cols=107  Identities=10%  Similarity=0.046  Sum_probs=81.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~l~~~l~~fD~V~  198 (318)
                      .+|..|||==||++|+-   +... +-|+.++|.|||..+++-|+.+++. .|+ ....+..+ |+.++|...+.||.|.
T Consensus       196 ~~G~~vlDPFcGTGgiL---iEag-l~G~~viG~Did~~mv~gak~Nl~~-y~i-~~~~~~~~~Da~~lpl~~~~vdaIa  269 (347)
T COG1041         196 KRGELVLDPFCGTGGIL---IEAG-LMGARVIGSDIDERMVRGAKINLEY-YGI-EDYPVLKVLDATNLPLRDNSVDAIA  269 (347)
T ss_pred             ccCCEeecCcCCccHHH---Hhhh-hcCceEeecchHHHHHhhhhhhhhh-hCc-CceeEEEecccccCCCCCCccceEE
Confidence            77889998777654332   3223 3599999999999999999999998 776 44555555 9999986655699998


Q ss_pred             eccccCCC--------hhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMD--------KDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~--------~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++---|-.        .+-..++|+...++|++||.+++-.+
T Consensus       270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            76432211        13478899999999999999988775

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.69  E-value=0.00013  Score=71.51  Aligned_cols=71  Identities=13%  Similarity=0.019  Sum_probs=50.2

Q ss_pred             HHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc
Q 021008          111 FNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV  187 (318)
Q Consensus       111 ~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l  187 (318)
                      ++....+....+.+|+|+=|| .|.-++.||+   ...+|+|||+++++++.|+++++. -|+ ++++|+++++.++
T Consensus       186 ~~~~~~~l~~~~~~vlDlycG-~G~fsl~la~---~~~~V~gvE~~~~av~~A~~Na~~-N~i-~n~~f~~~~~~~~  256 (352)
T PF05958_consen  186 YEQALEWLDLSKGDVLDLYCG-VGTFSLPLAK---KAKKVIGVEIVEEAVEDARENAKL-NGI-DNVEFIRGDAEDF  256 (352)
T ss_dssp             HHHHHHHCTT-TTEEEEES-T-TTCCHHHHHC---CSSEEEEEES-HHHHHHHHHHHHH-TT---SEEEEE--SHHC
T ss_pred             HHHHHHHhhcCCCcEEEEeec-CCHHHHHHHh---hCCeEEEeeCCHHHHHHHHHHHHH-cCC-CcceEEEeeccch
Confidence            333333433444589999999 5666688997   368999999999999999999997 677 6899999988764

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.67  E-value=0.00013  Score=66.54  Aligned_cols=87  Identities=23%  Similarity=0.290  Sum_probs=53.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE-E
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV-F  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V-~  198 (318)
                      ++...|+|.|||-.     .||+....+..|+.+|.-.               ..++  ++.+|..++|-+.+..|+| |
T Consensus        71 ~~~~viaD~GCGdA-----~la~~~~~~~~V~SfDLva---------------~n~~--Vtacdia~vPL~~~svDv~Vf  128 (219)
T PF05148_consen   71 PKSLVIADFGCGDA-----KLAKAVPNKHKVHSFDLVA---------------PNPR--VTACDIANVPLEDESVDVAVF  128 (219)
T ss_dssp             -TTS-EEEES-TT------HHHHH--S---EEEEESS----------------SSTT--EEES-TTS-S--TT-EEEEEE
T ss_pred             CCCEEEEECCCchH-----HHHHhcccCceEEEeeccC---------------CCCC--EEEecCccCcCCCCceeEEEE
Confidence            45579999999953     2444332356899999843               1233  5679999999888899965 4


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .-+|.|   .+...++.|..|+|||||.|.+.+
T Consensus       129 cLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAE  158 (219)
T PF05148_consen  129 CLSLMG---TNWPDFIREANRVLKPGGILKIAE  158 (219)
T ss_dssp             ES---S---S-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EhhhhC---CCcHHHHHHHHheeccCcEEEEEE
Confidence            567776   578999999999999999999987

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.67  E-value=0.0007  Score=57.51  Aligned_cols=101  Identities=21%  Similarity=0.164  Sum_probs=70.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhC---CCCcEEEEEeCChHHHHHHHHHhhcCCC--CCCCeEEEEccccccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINH---LTTTCFDNYDIDPSANSKALSLVSSDPD--LSTRMFFHTTDIMNVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~---~~ga~V~gvDid~~ai~~Ar~~~~~~~g--l~~ri~f~~gDa~~l~~~l~~f  194 (318)
                      .++.+|+|+||| -|+-+..||..+   .++.+|++||.++..++.|++..++ .+  +..+++|..++..+... ....
T Consensus        24 ~~~~~vvD~GsG-~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~  100 (141)
T PF13679_consen   24 KRCITVVDLGSG-KGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK-LGSDLEKRLSFIQGDIADESS-SDPP  100 (141)
T ss_pred             CCCCEEEEeCCC-hhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH-hcchhhccchhhccchhhhcc-cCCC
Confidence            678999999999 688888888611   2799999999999999999999888 66  56788998887765432 2355


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ++++--+..| +..  ..+++...+   |+...++
T Consensus       101 ~~~vgLHaCG-~Ls--~~~l~~~~~---~~~~~l~  129 (141)
T PF13679_consen  101 DILVGLHACG-DLS--DRALRLFIR---PNARFLV  129 (141)
T ss_pred             eEEEEeeccc-chH--HHHHHHHHH---cCCCEEE
Confidence            6555333344 332  334444433   6655443

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.61  E-value=0.00032  Score=63.95  Aligned_cols=107  Identities=19%  Similarity=0.194  Sum_probs=62.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHh---CCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-----cCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAIN---HLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-----SAL  191 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~---~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-----~~l  191 (318)
                      .+|+.|+++|.- -|.|++++|.-   ..+.++|+|||||-....+.  ..+. -.+..||+|++||..+..     ...
T Consensus        31 ~kPd~IIE~Gi~-~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~  106 (206)
T PF04989_consen   31 LKPDLIIETGIA-HGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIES-HPMSPRITFIQGDSIDPEIVDQVREL  106 (206)
T ss_dssp             H--SEEEEE--T-TSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSSTHHHHTSGSS
T ss_pred             hCCCeEEEEecC-CCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhh-ccccCceEEEECCCCCHHHHHHHHHh
Confidence            589999999995 68899988862   22678999999976544332  2233 456799999999998632     122


Q ss_pred             ---CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          192 ---KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       192 ---~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                         ....+|+.++-.  ..+.-.+.|+..+..++||+.+++-+.
T Consensus       107 ~~~~~~vlVilDs~H--~~~hvl~eL~~y~plv~~G~Y~IVeDt  148 (206)
T PF04989_consen  107 ASPPHPVLVILDSSH--THEHVLAELEAYAPLVSPGSYLIVEDT  148 (206)
T ss_dssp             ----SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred             hccCCceEEEECCCc--cHHHHHHHHHHhCccCCCCCEEEEEec
Confidence               244588888743  124566778889999999999999773

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.55  E-value=0.002  Score=62.53  Aligned_cols=122  Identities=14%  Similarity=0.201  Sum_probs=84.3

Q ss_pred             hhHHHHHHHhhcc------cCCCCEEEEEccCCChHHHHHHHHhC--CCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCe
Q 021008          106 LSQLEFNILTQHC------SRFPTKIAFIGSGPLPLTSIVLAINH--LTTTCFDNYDIDPSANSKALSLVSSDPDLSTRM  177 (318)
Q Consensus       106 L~~~E~~~l~~~~------~~~~~rVL~IGsGplp~tai~LA~~~--~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri  177 (318)
                      +++.|...|.+++      ..++..|+++|||.+--|.+.|..-.  ...++.++||||.++++.+.+.+.. ... ..+
T Consensus        55 ptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~-~~~-p~l  132 (319)
T TIGR03439        55 LTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL-GNF-SHV  132 (319)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh-ccC-CCe
Confidence            4566666555544      25667999999998777777665421  1357899999999999999887772 122 334


Q ss_pred             EE--EEcccccc----CcC-C-CCccEEE-ecccc-CCChhHHHHHHHHHHH-hccCCeEEEE
Q 021008          178 FF--HTTDIMNV----SSA-L-KDYEVVF-LAALV-GMDKDEKIRVIDHLAK-YMAPGALLML  229 (318)
Q Consensus       178 ~f--~~gDa~~l----~~~-l-~~fD~V~-~aalv-gm~~~~k~~vl~~l~r-~LkpGg~lv~  229 (318)
                      ++  ++||-.+.    +.. . ....+++ .-+.+ .++..+-..+|+++++ .|+||+.|++
T Consensus       133 ~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       133 RCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             EEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence            44  78877652    221 1 2456655 44445 3467888899999999 9999999888

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.55  E-value=0.00042  Score=67.67  Aligned_cols=87  Identities=17%  Similarity=0.199  Sum_probs=65.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++++||||+|+|.|- +|++   .|++|++||..+    .+.++..     ..+|++..+|........+.+|.|+.
T Consensus       210 ~~g~~vlDLGAsPGGWT~-~L~~---rG~~V~AVD~g~----l~~~L~~-----~~~V~h~~~d~fr~~p~~~~vDwvVc  276 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTY-QLVR---RGMFVTAVDNGP----MAQSLMD-----TGQVEHLRADGFKFRPPRKNVDWLVC  276 (357)
T ss_pred             CCCCEEEEeCCCCcHHHH-HHHH---cCCEEEEEechh----cCHhhhC-----CCCEEEEeccCcccCCCCCCCCEEEE
Confidence            688999999999999995 4555   388999999665    2333333     38899999999876433458999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPG  224 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpG  224 (318)
                      +..     +...++.+-+.+-+..|
T Consensus       277 Dmv-----e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        277 DMV-----EKPARVAELMAQWLVNG  296 (357)
T ss_pred             ecc-----cCHHHHHHHHHHHHhcC
Confidence            863     34567778888888776

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.55  E-value=0.001  Score=64.73  Aligned_cols=103  Identities=16%  Similarity=0.185  Sum_probs=76.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.++-|+|||||. |+-+.+.|+.  ...+|.+|+-|+ +.+.||++++. -.+.+||+++.|-+.++.-. ...|+++.
T Consensus       176 F~~kiVlDVGaGS-GILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~-N~~~~rItVI~GKiEdieLP-Ek~DviIS  249 (517)
T KOG1500|consen  176 FQDKIVLDVGAGS-GILSFFAAQA--GAKKVYAVEASE-MAQYARKLVAS-NNLADRITVIPGKIEDIELP-EKVDVIIS  249 (517)
T ss_pred             cCCcEEEEecCCc-cHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhc-CCccceEEEccCccccccCc-hhccEEEe
Confidence            4678999999995 7777776663  234799999876 67999999998 68899999999999986321 27999885


Q ss_pred             ccccCC-ChhHHHHHHHHHHHhccCCeEEE
Q 021008          200 AALVGM-DKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       200 aalvgm-~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      .-+=-| -.+.-.+-+-+.+|.|+|.|...
T Consensus       250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  250 EPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             ccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence            432111 12444555667789999999763

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.52  E-value=0.00051  Score=64.69  Aligned_cols=72  Identities=14%  Similarity=0.003  Sum_probs=55.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC-CccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK-DYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~-~fD~V  197 (318)
                      ..++..|++||.|.+.+|.. |++   .+.+|++|++|+..++.-++.+.    ..++++++.+|+....+..- .++.|
T Consensus        28 ~~~~d~VlEIGpG~GaLT~~-Ll~---~~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~l~~~~~v   99 (259)
T COG0030          28 ISPGDNVLEIGPGLGALTEP-LLE---RAARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPSLAQPYKV   99 (259)
T ss_pred             CCCCCeEEEECCCCCHHHHH-HHh---hcCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchhhcCCCEE
Confidence            35579999999998888875 554   38899999999988888776654    45899999999998644321 45655


Q ss_pred             E
Q 021008          198 F  198 (318)
Q Consensus       198 ~  198 (318)
                      +
T Consensus       100 V  100 (259)
T COG0030         100 V  100 (259)
T ss_pred             E
Confidence            5

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.52  E-value=0.00071  Score=64.03  Aligned_cols=73  Identities=16%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.-||+||-|++-+|-..|-    .|..|+++++||.+++.-.+.++. .+.+.+.+++.||....  ++..||.++
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe----~~kkVvA~E~Dprmvael~krv~g-tp~~~kLqV~~gD~lK~--d~P~fd~cV  128 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLE----AGKKVVAVEIDPRMVAELEKRVQG-TPKSGKLQVLHGDFLKT--DLPRFDGCV  128 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHH----hcCeEEEEecCcHHHHHHHHHhcC-CCccceeeEEecccccC--CCcccceee
Confidence            47889999999999888876553    399999999999999999999887 67779999999999875  445688776

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=97.52  E-value=0.0013  Score=60.30  Aligned_cols=107  Identities=21%  Similarity=0.149  Sum_probs=78.4

Q ss_pred             cCCCCEEEEEccCCChH-HHHHH--HHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccCcCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPL-TSIVL--AINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVSSALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~-tai~L--A~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~~~l~~f  194 (318)
                      +...+.|+++.|+..+. |++-|  |.++ +|.++++|-.++......++.... .|+.+.++|+.||.. ++...+...
T Consensus        39 G~nAkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~-~~~~~~vEfvvg~~~e~~~~~~~~i  116 (218)
T PF07279_consen   39 GWNAKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGE-AGLSDVVEFVVGEAPEEVMPGLKGI  116 (218)
T ss_pred             cccceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhh-ccccccceEEecCCHHHHHhhccCC
Confidence            46778999997663332 33333  3444 899999999999998888888877 788888999999954 566677899


Q ss_pred             cEEEeccccCCChhHHH-HHHHHHHHhccCCeEEEEEcC
Q 021008          195 EVVFLAALVGMDKDEKI-RVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~-~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+++++.    ..++.. ++|+.+ +.=+.|++++..++
T Consensus       117 DF~vVDc----~~~d~~~~vl~~~-~~~~~GaVVV~~Na  150 (218)
T PF07279_consen  117 DFVVVDC----KREDFAARVLRAA-KLSPRGAVVVCYNA  150 (218)
T ss_pred             CEEEEeC----CchhHHHHHHHHh-ccCCCceEEEEecc
Confidence            9999998    456666 777654 43345666666764

The function of this family is unknown.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.49  E-value=0.0008  Score=67.99  Aligned_cols=124  Identities=17%  Similarity=0.237  Sum_probs=87.9

Q ss_pred             ccCCcChhhHHHhhHHHHHHHhhcccCCCC-EEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCC
Q 021008           94 LNIFPYYSNYIKLSQLEFNILTQHCSRFPT-KIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDP  171 (318)
Q Consensus        94 L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~-rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~  171 (318)
                      ...|-+|..|..+...-...+     .+-. +++.+|||.-   .+..-. |.-| -.|+++|+|+-+++.....-.+  
T Consensus        25 ~~~~ewY~~~l~l~~~i~~~~-----~p~~~~~l~lGCGNS---~l~e~l-y~~G~~dI~~iD~S~V~V~~m~~~~~~--   93 (482)
T KOG2352|consen   25 SDPFEWYGALLSLSGSIMKYL-----SPSDFKILQLGCGNS---ELSEHL-YKNGFEDITNIDSSSVVVAAMQVRNAK--   93 (482)
T ss_pred             CChHHHHHHHHHHHHHHHHhh-----chhhceeEeecCCCC---HHHHHH-HhcCCCCceeccccHHHHHHHHhcccc--
Confidence            456777777777765544433     3444 9999999853   444432 2123 3699999999999988554322  


Q ss_pred             CCCCCeEEEEccccccCcCCCCccEEE----eccccC-----CChhHHHHHHHHHHHhccCCeEEEE
Q 021008          172 DLSTRMFFHTTDIMNVSSALKDYEVVF----LAALVG-----MDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       172 gl~~ri~f~~gDa~~l~~~l~~fD~V~----~aalvg-----m~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                       -..-+++.+.|...+.+++.+||+|+    ++++..     ++...+.+.+.+++|+++|||+++.
T Consensus        94 -~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s  159 (482)
T KOG2352|consen   94 -ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS  159 (482)
T ss_pred             -CCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence             23568999999999999999999998    455541     1223567889999999999998543

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.49  E-value=0.00055  Score=61.76  Aligned_cols=146  Identities=18%  Similarity=0.188  Sum_probs=98.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .....+.|+|+|.++++ ...|+   ..-+|++|+.||...+.|.++..- .|+ .+++++.||+.+..+  ..-|+|+.
T Consensus        31 va~d~~~DLGaGsGiLs-~~Aa~---~A~rViAiE~dPk~a~~a~eN~~v-~g~-~n~evv~gDA~~y~f--e~ADvvic  102 (252)
T COG4076          31 VAEDTFADLGAGSGILS-VVAAH---AAERVIAIEKDPKRARLAEENLHV-PGD-VNWEVVVGDARDYDF--ENADVVIC  102 (252)
T ss_pred             HhhhceeeccCCcchHH-HHHHh---hhceEEEEecCcHHHHHhhhcCCC-CCC-cceEEEecccccccc--cccceeHH
Confidence            34589999999976665 33443   267999999999999999999865 666 889999999998755  56798874


Q ss_pred             ccccC-CChhHHHHHHHHHHHhccCCeEEEEE---c-CCCc----ccccccCCCc-cccC---CcEEEEEEcCchhHHHH
Q 021008          200 AALVG-MDKDEKIRVIDHLAKYMAPGALLMLR---S-AHGA----RAFLYPVVDP-SDLL---GFEVLSVFHPTDEVINS  266 (318)
Q Consensus       200 aalvg-m~~~~k~~vl~~l~r~LkpGg~lv~r---~-~~g~----r~~lYP~v~~-~~l~---gf~~~~~~~p~~~VvNs  266 (318)
                      .-+-. +-.+....++..+.+.||-.+.++=.   + +...    +...|..=-+ ++..   -++......|.++|.|-
T Consensus       103 EmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv~~~~~~i~Yde~l~se~~~p~~iye~v~f~k~~PEvy~~  182 (252)
T COG4076         103 EMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVRIGANPVRRPPRTIRYDEGLPSEDIEPEVIYEVVRFDKPIPEVYNK  182 (252)
T ss_pred             HHhhHHhhcccccHHHHHHHHHhhcCCccccHHHhhccCccccCCcccccCCCCCccccCcceeEEEEeccCCCchhhcc
Confidence            43211 01256678999999999999988642   2 2222    3344432111 2222   36666666677788775


Q ss_pred             HHHHhhc
Q 021008          267 VVLARKY  273 (318)
Q Consensus       267 vv~ark~  273 (318)
                      -.-..++
T Consensus       183 ~lele~s  189 (252)
T COG4076         183 KLELETS  189 (252)
T ss_pred             eeEEecC
Confidence            5444443

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.45  E-value=0.00023  Score=66.91  Aligned_cols=110  Identities=15%  Similarity=0.166  Sum_probs=69.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC---------------CCCC----------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD---------------PDLS----------  174 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~---------------~gl~----------  174 (318)
                      .++.+++||||||.-+.++.+++.   =-.|+..|..+.-.+.-++.++..               .|-.          
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~---f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l  131 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEW---FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL  131 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGT---EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHh---hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence            567899999999977776655542   246999999988777555554441               1111          


Q ss_pred             -CCe-EEEEccccccCc-----CCC-CccEEEecccc---CCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          175 -TRM-FFHTTDIMNVSS-----ALK-DYEVVFLAALV---GMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       175 -~ri-~f~~gDa~~l~~-----~l~-~fD~V~~aalv---gm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                       ..| +++..|+...+.     .+. .||+|.....+   .-+.+++.+.++++.+.|||||.|++-..
T Consensus       132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~  200 (256)
T PF01234_consen  132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV  200 (256)
T ss_dssp             HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence             113 377788876321     123 49998744322   22678999999999999999999998763

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.45  E-value=0.00073  Score=58.08  Aligned_cols=83  Identities=13%  Similarity=0.250  Sum_probs=61.4

Q ss_pred             EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC--CccEEEe-cc-ccCCC------hhHHHHHHHHHH
Q 021008          149 CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK--DYEVVFL-AA-LVGMD------KDEKIRVIDHLA  218 (318)
Q Consensus       149 ~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~--~fD~V~~-aa-lvgm~------~~~k~~vl~~l~  218 (318)
                      +|.|+||-++|++.++++.++ .++.+|++++...-.++.....  ..|++++ -. |-|-|      .+.....++.+.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~-~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al   79 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEE-AGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL   79 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHH-TT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHh-cCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence            589999999999999999999 8888999999999998866554  4896653 22 32322      356678999999


Q ss_pred             HhccCCeEEEEEcC
Q 021008          219 KYMAPGALLMLRSA  232 (318)
Q Consensus       219 r~LkpGg~lv~r~~  232 (318)
                      +.|+|||++++--.
T Consensus        80 ~lL~~gG~i~iv~Y   93 (140)
T PF06962_consen   80 ELLKPGGIITIVVY   93 (140)
T ss_dssp             HHEEEEEEEEEEE-
T ss_pred             HhhccCCEEEEEEe
Confidence            99999999877653

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.44  E-value=0.003  Score=61.54  Aligned_cols=160  Identities=9%  Similarity=0.064  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhhcCCCCccccc---CCcChhhHH---HhhH---HHHHHHhh--ccc-----CCC
Q 021008           59 QDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLN---IFPYYSNYI---KLSQ---LEFNILTQ--HCS-----RFP  122 (318)
Q Consensus        59 ~~l~~~l~~l~~~ae~~lE~~~A~~l~~~~~P~~~L~---~fpY~~ny~---~L~~---~E~~~l~~--~~~-----~~~  122 (318)
                      .++-+.+....++....-..++.+.+....+|+.+..   .+.|..-..   ..+.   .....+.+  ...     ..-
T Consensus        99 ~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v  178 (342)
T KOG3178|consen   99 GSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGV  178 (342)
T ss_pred             CchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccC
Confidence            4455666666677777778888999988766664432   366665333   1111   11111111  001     124


Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      ...+|||+|. |-.+-.+.. ++|.  |.+|+.|..-+..++....  .|    |+.+-||...=   ..+-|+||+...
T Consensus       179 ~~avDvGgGi-G~v~k~ll~-~fp~--ik~infdlp~v~~~a~~~~--~g----V~~v~gdmfq~---~P~~daI~mkWi  245 (342)
T KOG3178|consen  179 NVAVDVGGGI-GRVLKNLLS-KYPH--IKGINFDLPFVLAAAPYLA--PG----VEHVAGDMFQD---TPKGDAIWMKWI  245 (342)
T ss_pred             ceEEEcCCcH-hHHHHHHHH-hCCC--CceeecCHHHHHhhhhhhc--CC----cceeccccccc---CCCcCeEEEEee
Confidence            7899999995 555545554 4466  6677888777776655442  22    88888988742   235679999875


Q ss_pred             c-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          203 V-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       203 v-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      + +|+.++=.++|.++++-|+|||.+++-+
T Consensus       246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E  275 (342)
T KOG3178|consen  246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVE  275 (342)
T ss_pred             cccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            5 6677899999999999999999998876

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.40  E-value=0.00044  Score=66.58  Aligned_cols=100  Identities=22%  Similarity=0.314  Sum_probs=82.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+.+|..||.|-.|+-+--+|-.  -|+.|+-+|+|.+.+..-..++      +.|+........++.....+.|+|+-
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n~~rl~~ldd~f------~~rv~~~~st~~~iee~v~~aDlvIg  237 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLNIDRLRQLDDLF------GGRVHTLYSTPSNIEEAVKKADLVIG  237 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhc--cCCeeEEEecCHHHHhhhhHhh------CceeEEEEcCHHHHHHHhhhccEEEE
Confidence            677899999999999999999874  5999999999998777665544      36788888888888777779999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      +-|++-.+.+|. +.+++.+.||||++++
T Consensus       238 aVLIpgakaPkL-vt~e~vk~MkpGsViv  265 (371)
T COG0686         238 AVLIPGAKAPKL-VTREMVKQMKPGSVIV  265 (371)
T ss_pred             EEEecCCCCcee-hhHHHHHhcCCCcEEE
Confidence            888855555554 8899899999999875

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.40  E-value=0.0006  Score=56.95  Aligned_cols=60  Identities=13%  Similarity=0.079  Sum_probs=49.6

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV  187 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l  187 (318)
                      .|+||||| .|..++.+++. .++++|+++|.+|.+.+.+++.++. .++. +++++...+.+-
T Consensus         1 ~vlDiGa~-~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~-n~~~-~v~~~~~al~~~   60 (143)
T TIGR01444         1 VVIDVGAN-IGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKL-NNLP-NVVLLNAAVGDR   60 (143)
T ss_pred             CEEEccCC-ccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHH-cCCC-cEEEEEeeeeCC
Confidence            37999999 57888888875 4788999999999999999999886 5663 589888877653

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.33  E-value=0.0029  Score=58.96  Aligned_cols=106  Identities=16%  Similarity=0.165  Sum_probs=66.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCcCCC-CccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSSALK-DYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~~l~-~fD~V  197 (318)
                      -.+++||+||=+  =++|+.+|-.. +..+|+.+|||+..++.-++.+++ .|+.  ++.+..|+.+ +|.++. .||++
T Consensus        43 L~gk~il~lGDD--DLtSlA~al~~-~~~~I~VvDiDeRll~fI~~~a~~-~gl~--i~~~~~DlR~~LP~~~~~~fD~f  116 (243)
T PF01861_consen   43 LEGKRILFLGDD--DLTSLALALTG-LPKRITVVDIDERLLDFINRVAEE-EGLP--IEAVHYDLRDPLPEELRGKFDVF  116 (243)
T ss_dssp             STT-EEEEES-T--T-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHH-HT----EEEE---TTS---TTTSS-BSEE
T ss_pred             ccCCEEEEEcCC--cHHHHHHHhhC-CCCeEEEEEcCHHHHHHHHHHHHH-cCCc--eEEEEecccccCCHHHhcCCCEE
Confidence            478999999987  57888888654 678999999999999999999998 6764  9999999986 676665 89999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCe-EEEEEcCC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGA-LLMLRSAH  233 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg-~lv~r~~~  233 (318)
                      |++=--  ..+--.-++..-...||.-| ...+-.++
T Consensus       117 ~TDPPy--T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~  151 (243)
T PF01861_consen  117 FTDPPY--TPEGLKLFLSRGIEALKGEGCAGYFGFTH  151 (243)
T ss_dssp             EE---S--SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred             EeCCCC--CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence            988521  33444557777777888766 44444443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.31  E-value=0.00087  Score=67.12  Aligned_cols=89  Identities=13%  Similarity=0.053  Sum_probs=63.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|+.+|+|++|......++.  .|++|+.+|+|+...+.|++     .|.    +..  +..+   ....+|+|+.
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~--~Ga~ViV~d~d~~R~~~A~~-----~G~----~~~--~~~e---~v~~aDVVI~  263 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRG--QGARVIVTEVDPICALQAAM-----EGY----EVM--TMEE---AVKEGDIFVT  263 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECChhhHHHHHh-----cCC----EEc--cHHH---HHcCCCEEEE
Confidence            579999999999999999888875  48999999999988777754     232    111  1112   2246899986


Q ss_pred             ccccCCChhHHHHHHH-HHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVID-HLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~-~l~r~LkpGg~lv~r~  231 (318)
                      +.-      .+. ++. ...+.||+||+++.-.
T Consensus       264 atG------~~~-~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         264 TTG------NKD-IITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CCC------CHH-HHHHHHHhcCCCCcEEEEeC
Confidence            542      222 444 3478999999987654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.28  E-value=0.0039  Score=55.29  Aligned_cols=99  Identities=24%  Similarity=0.314  Sum_probs=66.5

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc-------CCCC--------CCCeEEEEccccccC
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS-------DPDL--------STRMFFHTTDIMNVS  188 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~-------~~gl--------~~ri~f~~gDa~~l~  188 (318)
                      +|..||+|.+|-.-..+...  .|.+|+-+|.|++.++.+++.+.+       ...+        -.++++. .|..++ 
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~-   76 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA-   76 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG-
T ss_pred             CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH-
Confidence            68999999987654444433  399999999999999998776553       0111        2456653 444333 


Q ss_pred             cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          189 SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       189 ~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                         .+.|+|+= +... +.+-|.++|+++.+.++|+.+|...+
T Consensus        77 ---~~adlViE-ai~E-~l~~K~~~~~~l~~~~~~~~ilasnT  114 (180)
T PF02737_consen   77 ---VDADLVIE-AIPE-DLELKQELFAELDEICPPDTILASNT  114 (180)
T ss_dssp             ---CTESEEEE--S-S-SHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred             ---hhhheehh-hccc-cHHHHHHHHHHHHHHhCCCceEEecC
Confidence               26888884 3332 67999999999999999999998877

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.002  Score=58.75  Aligned_cols=122  Identities=20%  Similarity=0.207  Sum_probs=80.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC------cCCC-
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS------SALK-  192 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~------~~l~-  192 (318)
                      .++.+|+|+|+-|+|.|- +++++..++..|++||+.|             ...-..+.|+.+|.++-+      ..++ 
T Consensus        44 ~~~~~ViDLGAAPGgWsQ-va~~~~~~~~~ivavDi~p-------------~~~~~~V~~iq~d~~~~~~~~~l~~~l~~  109 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQ-VAAKKLGAGGKIVAVDILP-------------MKPIPGVIFLQGDITDEDTLEKLLEALGG  109 (205)
T ss_pred             cCCCEEEEcCCCCCcHHH-HHHHHhCCCCcEEEEECcc-------------cccCCCceEEeeeccCccHHHHHHHHcCC
Confidence            788999999999999985 4666655566799999998             223345999999998632      2333 


Q ss_pred             -CccEEEecccc---CC---C----hhHHHHHHHHHHHhccCCeEEEEEcCCCccc--ccccCCCccccC-CcEEEEEEc
Q 021008          193 -DYEVVFLAALV---GM---D----KDEKIRVIDHLAKYMAPGALLMLRSAHGARA--FLYPVVDPSDLL-GFEVLSVFH  258 (318)
Q Consensus       193 -~fD~V~~aalv---gm---~----~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~--~lYP~v~~~~l~-gf~~~~~~~  258 (318)
                       .+|+|..+..-   |.   |    ..-...+++-...+|+|||.+++-...|.-.  ++      ..++ .|+.+....
T Consensus       110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l------~~~~~~F~~v~~~K  183 (205)
T COG0293         110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLL------KALRRLFRKVKIFK  183 (205)
T ss_pred             CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHH------HHHHHhhceeEEec
Confidence             46999965421   11   1    1223344555567999999999987555321  22      1233 677777766


Q ss_pred             Cch
Q 021008          259 PTD  261 (318)
Q Consensus       259 p~~  261 (318)
                      |..
T Consensus       184 P~a  186 (205)
T COG0293         184 PKA  186 (205)
T ss_pred             Ccc
Confidence            654

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.22  E-value=0.0034  Score=57.72  Aligned_cols=104  Identities=20%  Similarity=0.212  Sum_probs=82.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+.+++||||-. ++-.++|-+.+ +-.++++.|+++..++.|.+.+.+ .++.++++...+|+.......+.+|++.+
T Consensus        15 ~~~~~iaDIGsDH-AYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~-~~l~~~i~vr~~dgl~~l~~~d~~d~ivI   91 (226)
T COG2384          15 KQGARIADIGSDH-AYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKK-NNLSERIDVRLGDGLAVLELEDEIDVIVI   91 (226)
T ss_pred             HcCCceeeccCch-hHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHh-cCCcceEEEeccCCccccCccCCcCEEEE
Confidence            5667799999987 56666777765 788999999999999999999999 99999999999999775444448999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +.+=|   .-=.+++++-...++.=-++++
T Consensus        92 AGMGG---~lI~~ILee~~~~l~~~~rlIL  118 (226)
T COG2384          92 AGMGG---TLIREILEEGKEKLKGVERLIL  118 (226)
T ss_pred             eCCcH---HHHHHHHHHhhhhhcCcceEEE
Confidence            87433   2345788888887775445555

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.21  E-value=0.0037  Score=57.56  Aligned_cols=116  Identities=9%  Similarity=0.133  Sum_probs=82.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--ALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l~~fD~V  197 (318)
                      .++.|||.||=| +|+..-.+.++  +-.+=+-|+..|++.++-|...-   +-.++|-...|-=.|...  +++.||-|
T Consensus       100 tkggrvLnVGFG-MgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~gw---~ek~nViil~g~WeDvl~~L~d~~FDGI  173 (271)
T KOG1709|consen  100 TKGGRVLNVGFG-MGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWGW---REKENVIILEGRWEDVLNTLPDKHFDGI  173 (271)
T ss_pred             hCCceEEEeccc-hHHHHHHHhhc--CCcceEEEecCHHHHHHHHhccc---ccccceEEEecchHhhhccccccCccee
Confidence            789999999999 88887766653  44444568999999988776432   234667766664334322  23479999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCccc-ccccC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARA-FLYPV  242 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~-~lYP~  242 (318)
                      +.+.+-. .-++-..+.+++.+.|||||++.+-++-|... +.|.+
T Consensus       174 ~yDTy~e-~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~~v  218 (271)
T KOG1709|consen  174 YYDTYSE-LYEDLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFYDV  218 (271)
T ss_pred             Eeechhh-HHHHHHHHHHHHhhhcCCCceEEEecCcccchhhhhhh
Confidence            9887632 23677889999999999999999888655544 55554

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.20  E-value=0.0031  Score=59.33  Aligned_cols=100  Identities=25%  Similarity=0.303  Sum_probs=68.0

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc------CCC-CC--------CCeEEEEcccccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS------DPD-LS--------TRMFFHTTDIMNV  187 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~------~~g-l~--------~ri~f~~gDa~~l  187 (318)
                      ++|..||+|.+|.+.......  .|.+|+.+|++++.++.+++.+.+      ..| +.        .++++ +.|..  
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~--~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~--   78 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAV--AGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD--   78 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHH--CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH--
Confidence            489999999988776554443  388999999999999876532211      022 11        14443 23322  


Q ss_pred             CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          188 SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 ~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                        ..+..|+|+.+.--  +..-|.++++++.+.++|+..|+...
T Consensus        79 --~~~~aDlVi~av~e--~~~~k~~~~~~l~~~~~~~~il~s~t  118 (282)
T PRK05808         79 --DLKDADLVIEAATE--NMDLKKKIFAQLDEIAKPEAILATNT  118 (282)
T ss_pred             --HhccCCeeeecccc--cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence              24578999987632  34678899999999999998884433

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.18  E-value=0.007  Score=54.40  Aligned_cols=107  Identities=18%  Similarity=0.235  Sum_probs=73.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..++=+++||||. |.-+-+|++...|++...+.||+|.|.+..++-++.   -+.++..+++|..+-... ++.|++.+
T Consensus        42 ~~~~i~lEIG~GS-GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~---n~~~~~~V~tdl~~~l~~-~~VDvLvf  116 (209)
T KOG3191|consen   42 HNPEICLEIGCGS-GVVSTFLASVIGPQALYLATDINPEALEATLETARC---NRVHIDVVRTDLLSGLRN-ESVDVLVF  116 (209)
T ss_pred             cCceeEEEecCCc-chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh---cCCccceeehhHHhhhcc-CCccEEEE
Confidence            4588999999996 666667888877899999999999999988776665   224477888888764333 57886542


Q ss_pred             -ccccCCC-------------------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 -AALVGMD-------------------KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 -aalvgm~-------------------~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       --.|.-+                   ++--.+++.++-..|.|.|++.+-.
T Consensus       117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~  168 (209)
T KOG3191|consen  117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA  168 (209)
T ss_pred             CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence             2222111                   1223456666667778888765543

>cd08230 glucose_DH Glucose dehydrogenase

Probab=97.17  E-value=0.0015  Score=62.92  Aligned_cols=96  Identities=15%  Similarity=0.180  Sum_probs=64.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeC---ChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDI---DPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDi---d~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      .++.+|+.+|+|++|..++.+|+.  .|++|++++.   +++..+.++++     |.. .+.....|..+. .....||+
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~--~G~~vi~~~~~~~~~~~~~~~~~~-----Ga~-~v~~~~~~~~~~-~~~~~~d~  241 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRL--RGFEVYVLNRRDPPDPKADIVEEL-----GAT-YVNSSKTPVAEV-KLVGEFDL  241 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHc-----CCE-EecCCccchhhh-hhcCCCCE
Confidence            578999999999999999999986  4889999997   67776666543     321 121111111111 11237999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||-..  |     ....+....+.|++||++++-.
T Consensus       242 vid~~--g-----~~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         242 IIEAT--G-----VPPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             EEECc--C-----CHHHHHHHHHHccCCcEEEEEe
Confidence            98554  2     1236677789999999987654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.15  E-value=0.0023  Score=60.59  Aligned_cols=98  Identities=19%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC---------CCC---------CCCeEEEEccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD---------PDL---------STRMFFHTTDI  184 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~---------~gl---------~~ri~f~~gDa  184 (318)
                      ++|..||+|.+|.+.......  .|.+|+.+|++++.++.+++.+.+.         .|.         ..++.+. .|.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence            689999999988765444333  4889999999999998876543320         011         1123332 222


Q ss_pred             cccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          185 MNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       185 ~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                          ......|+|+.+...  +.+.|..+++++.+.++|+.+|+.
T Consensus        81 ----~~~~~aDlVieav~e--~~~~k~~~~~~l~~~~~~~~il~S  119 (291)
T PRK06035         81 ----ESLSDADFIVEAVPE--KLDLKRKVFAELERNVSPETIIAS  119 (291)
T ss_pred             ----HHhCCCCEEEEcCcC--cHHHHHHHHHHHHhhCCCCeEEEE
Confidence                123478999987532  345689999999999999887754

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.12  E-value=0.0021  Score=58.25  Aligned_cols=104  Identities=16%  Similarity=0.255  Sum_probs=76.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..++|||+.|+|+ |+.+|.-|+.  -...|+..|++|..++..+-+++. -|  -.+.|...|...   ....||+++.
T Consensus        78 VrgkrVLd~gags-gLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~a-ng--v~i~~~~~d~~g---~~~~~Dl~La  148 (218)
T COG3897          78 VRGKRVLDLGAGS-GLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAA-NG--VSILFTHADLIG---SPPAFDLLLA  148 (218)
T ss_pred             cccceeeeccccc-ChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhh-cc--ceeEEeeccccC---CCcceeEEEe
Confidence            6789999999996 8999877763  245799999999998888888877 34  568888888765   3348999987


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      .-++ .++..-.+++.-..+....|..+++-+++
T Consensus       149 gDlf-y~~~~a~~l~~~~~~l~~~g~~vlvgdp~  181 (218)
T COG3897         149 GDLF-YNHTEADRLIPWKDRLAEAGAAVLVGDPG  181 (218)
T ss_pred             ecee-cCchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence            6655 24556667777555555666677766643

>PRK10742 putative methyltransferase; Provisional

Probab=97.12  E-value=0.0017  Score=60.81  Aligned_cols=79  Identities=14%  Similarity=0.147  Sum_probs=63.5

Q ss_pred             CCCC--EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC------C--CCCCeEEEEccccccCc
Q 021008          120 RFPT--KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP------D--LSTRMFFHTTDIMNVSS  189 (318)
Q Consensus       120 ~~~~--rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~------g--l~~ri~f~~gDa~~l~~  189 (318)
                      .++.  +|||.=+| +|-.++.+|.   .|++|+.||.+|.+...-++..++ +      +  +..||+++.+|+.+...
T Consensus        85 k~g~~p~VLD~TAG-lG~Da~~las---~G~~V~~vEr~p~vaalL~dgL~r-a~~~~~~~~~~~~ri~l~~~da~~~L~  159 (250)
T PRK10742         85 KGDYLPDVVDATAG-LGRDAFVLAS---VGCRVRMLERNPVVAALLDDGLAR-GYADAEIGGWLQERLQLIHASSLTALT  159 (250)
T ss_pred             CCCCCCEEEECCCC-ccHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHH-hhhccccchhhhceEEEEeCcHHHHHh
Confidence            4555  89999999 7888898987   399999999999999988877776 3      2  23689999999988654


Q ss_pred             CCC-CccEEEecccc
Q 021008          190 ALK-DYEVVFLAALV  203 (318)
Q Consensus       190 ~l~-~fD~V~~aalv  203 (318)
                      ... .||+||++=..
T Consensus       160 ~~~~~fDVVYlDPMf  174 (250)
T PRK10742        160 DITPRPQVVYLDPMF  174 (250)
T ss_pred             hCCCCCcEEEECCCC
Confidence            433 79999987644

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.11  E-value=0.0011  Score=62.46  Aligned_cols=85  Identities=22%  Similarity=0.300  Sum_probs=64.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccE-EE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEV-VF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~-V~  198 (318)
                      +...-|+|+|||-.     -+|..  ..-.|+.+|+-+                 .+-+++.+|..++|-++.+.|+ ||
T Consensus       179 ~~~~vIaD~GCGEa-----kiA~~--~~~kV~SfDL~a-----------------~~~~V~~cDm~~vPl~d~svDvaV~  234 (325)
T KOG3045|consen  179 PKNIVIADFGCGEA-----KIASS--ERHKVHSFDLVA-----------------VNERVIACDMRNVPLEDESVDVAVF  234 (325)
T ss_pred             cCceEEEecccchh-----hhhhc--cccceeeeeeec-----------------CCCceeeccccCCcCccCcccEEEe
Confidence            45578999999942     34432  245788888732                 2235677999999988889996 55


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .-+|.|   .+...++.+..|+|+|||.+-+.+
T Consensus       235 CLSLMg---tn~~df~kEa~RiLk~gG~l~IAE  264 (325)
T KOG3045|consen  235 CLSLMG---TNLADFIKEANRILKPGGLLYIAE  264 (325)
T ss_pred             eHhhhc---ccHHHHHHHHHHHhccCceEEEEe
Confidence            667766   577889999999999999998877

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.11  E-value=0.0024  Score=62.00  Aligned_cols=102  Identities=18%  Similarity=0.242  Sum_probs=68.9

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc------CCCC-----CCCeEEEEccccccCcC
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS------DPDL-----STRMFFHTTDIMNVSSA  190 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~------~~gl-----~~ri~f~~gDa~~l~~~  190 (318)
                      -++|..||+|.+|..-......  .|.+|+.+|+++++.+.+++.+.+      ..|+     ..++++.. |   +...
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~---l~~a   80 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALA--HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-T---IEAC   80 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-C---HHHH
Confidence            4799999999877664333222  499999999999998877653321      0122     13455442 2   2223


Q ss_pred             CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....|+|+-+..  -+.+-|..+++++.+.++|+.+|...+
T Consensus        81 v~~aDlViEavp--E~l~vK~~lf~~l~~~~~~~aIlaSnT  119 (321)
T PRK07066         81 VADADFIQESAP--EREALKLELHERISRAAKPDAIIASST  119 (321)
T ss_pred             hcCCCEEEECCc--CCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence            357899886542  256789999999999999999665544

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=97.10  E-value=0.0023  Score=61.60  Aligned_cols=95  Identities=13%  Similarity=0.167  Sum_probs=64.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++||.+|+|++|+.++.+|++...+++|+++|.+++..+.|++ +..    .    +.. +  ++... ..+|+|+=
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~----~----~~~-~--~~~~~-~g~d~viD  228 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE----T----YLI-D--DIPED-LAVDHAFE  228 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc----e----eeh-h--hhhhc-cCCcEEEE
Confidence            5789999999999999988888753346789999999988888764 211    1    110 1  12111 15898884


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..  |-  ......+.+..+.|++||++++-.
T Consensus       229 ~~--G~--~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         229 CV--GG--RGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             CC--CC--CccHHHHHHHHHhCcCCcEEEEEe
Confidence            33  21  112346777789999999988754

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.09  E-value=0.0028  Score=61.35  Aligned_cols=112  Identities=19%  Similarity=0.220  Sum_probs=73.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-----cccccC-cCC-
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-----DIMNVS-SAL-  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-----Da~~l~-~~l-  191 (318)
                      ...+.+||.+|+||+|+-++..|+.+ --.+|+.+|+++..++.|+++=..      -+.....     +..++. ..+ 
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~~Ga~------~~~~~~~~~~~~~~~~~v~~~~g  239 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKKFGAT------VTDPSSHKSSPQELAELVEKALG  239 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHHhCCe------EEeeccccccHHHHHHHHHhhcc
Confidence            47899999999999999999999875 345899999999999999984221      1111111     111111 111 


Q ss_pred             -CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccccCCCc
Q 021008          192 -KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDP  245 (318)
Q Consensus       192 -~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~v~~  245 (318)
                       ..||++|-.+...       ..++.....+|+||++++.. +|....-+|..+.
T Consensus       240 ~~~~d~~~dCsG~~-------~~~~aai~a~r~gGt~vlvg-~g~~~~~fpi~~v  286 (354)
T KOG0024|consen  240 KKQPDVTFDCSGAE-------VTIRAAIKATRSGGTVVLVG-MGAEEIQFPIIDV  286 (354)
T ss_pred             ccCCCeEEEccCch-------HHHHHHHHHhccCCEEEEec-cCCCccccChhhh
Confidence             2599999666432       12333356899999965554 5544566776553

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.09  E-value=0.0049  Score=58.54  Aligned_cols=100  Identities=17%  Similarity=0.286  Sum_probs=68.8

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CCC-C--------CCeEEEEcccccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PDL-S--------TRMFFHTTDIMNV  187 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~gl-~--------~ri~f~~gDa~~l  187 (318)
                      ++|..||+|.+|..-......  .|..|+.+|++++.++.+++.+.+.      .|. .        .++++ +.|.   
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~---   79 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL---   79 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH---
Confidence            589999999877664333222  4999999999999999876553320      121 1        23433 2332   


Q ss_pred             CcCCCCccEEEeccccCCChhHHHHHHHHHHHhc-cCCeEEEEEc
Q 021008          188 SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYM-APGALLMLRS  231 (318)
Q Consensus       188 ~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~L-kpGg~lv~r~  231 (318)
                       ....+.|+|+-+..  -+.+-|..++..+.+.+ +||.+++..+
T Consensus        80 -~~~~~~d~ViEav~--E~~~~K~~l~~~l~~~~~~~~~il~snT  121 (286)
T PRK07819         80 -GDFADRQLVIEAVV--EDEAVKTEIFAELDKVVTDPDAVLASNT  121 (286)
T ss_pred             -HHhCCCCEEEEecc--cCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence             23457899996542  26688999999999988 8898887766

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.08  E-value=0.0015  Score=62.48  Aligned_cols=110  Identities=12%  Similarity=0.126  Sum_probs=85.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC-CCC-CCCeEEEEccccccCcCC--CCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD-PDL-STRMFFHTTDIMNVSSAL--KDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-~gl-~~ri~f~~gDa~~l~~~l--~~f  194 (318)
                      .+.|++||.||.|-+|.-.+..  +|-.=..++-+|||...++.+++..... .|. +.++.++-||+..+-...  +.|
T Consensus       119 ~~npkkvlVVgggDggvlrevi--kH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~  196 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVI--KHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF  196 (337)
T ss_pred             CCCCCeEEEEecCCccceeeee--ccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence            4889999999999988887655  4523346889999999999999998762 233 579999999998765444  489


Q ss_pred             cEEEecc--ccCCChh--HHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAA--LVGMDKD--EKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aa--lvgm~~~--~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|++++  .+| +..  -...+++.+.+.||+||++++-.
T Consensus       197 dVii~dssdpvg-pa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  197 DVIITDSSDPVG-PACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             eEEEEecCCccc-hHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            9999876  332 332  23468899999999999998855

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.05  E-value=0.0041  Score=58.58  Aligned_cols=94  Identities=17%  Similarity=0.229  Sum_probs=65.3

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      ...++||||+|-++.|. .+|..+   .+|++-|.|+.|..+   + ++ .|    .+.+  |..+.......||+|-.-
T Consensus        94 ~~~~lLDlGAGdG~VT~-~l~~~f---~~v~aTE~S~~Mr~r---L-~~-kg----~~vl--~~~~w~~~~~~fDvIscL  158 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTE-RLAPLF---KEVYATEASPPMRWR---L-SK-KG----FTVL--DIDDWQQTDFKFDVISCL  158 (265)
T ss_pred             cCCceEEecCCCcHHHH-HHHhhc---ceEEeecCCHHHHHH---H-Hh-CC----CeEE--ehhhhhccCCceEEEeeh
Confidence            56899999999766665 677633   358899999988544   2 22 23    2333  344443333489999866


Q ss_pred             cccCCCh-hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          201 ALVGMDK-DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       201 alvgm~~-~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .++  |. .....+|+++++.|+|+|++++.-
T Consensus       159 NvL--DRc~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  159 NVL--DRCDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             hhh--hccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            654  32 456789999999999999998865

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.02  E-value=0.0012  Score=65.11  Aligned_cols=103  Identities=18%  Similarity=0.210  Sum_probs=65.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|+.||+|+.|..++..++.+  |++|+.+|.+++..+.+.+...      ..+.....+..++......+|+|+.
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g------~~v~~~~~~~~~l~~~l~~aDvVI~  236 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFG------GRIHTRYSNAYEIEDAVKRADLLIG  236 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcC------ceeEeccCCHHHHHHHHccCCEEEE
Confidence            3678999999999999999998864  8899999999977655433221      1222211222233333457999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+.-...+ .-+-++..+.|+||++++--.
T Consensus       237 a~~~~g~~~p-~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       237 AVLIPGAKAP-KLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             ccccCCCCCC-cCcCHHHHhcCCCCCEEEEEe
Confidence            7644111111 113356668899998775433

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.01  E-value=0.0026  Score=61.37  Aligned_cols=80  Identities=14%  Similarity=0.012  Sum_probs=62.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-----CCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-----ALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-----~l~~  193 (318)
                      +.++..++|-=+|.+|-|.. +++.+ ++++|+|+|+|++|++.|++....   .+.|++++.++-.++..     .+.+
T Consensus        18 ~~~ggiyVD~TlG~GGHS~~-iL~~l-~~g~vigiD~D~~Al~~ak~~L~~---~~~R~~~i~~nF~~l~~~l~~~~~~~   92 (305)
T TIGR00006        18 IKPDGIYIDCTLGFGGHSKA-ILEQL-GTGRLIGIDRDPQAIAFAKERLSD---FEGRVVLIHDNFANFFEHLDELLVTK   92 (305)
T ss_pred             cCCCCEEEEeCCCChHHHHH-HHHhC-CCCEEEEEcCCHHHHHHHHHHHhh---cCCcEEEEeCCHHHHHHHHHhcCCCc
Confidence            35678999999997677765 45544 569999999999999999998765   45799999999887543     2246


Q ss_pred             ccEEEecccc
Q 021008          194 YEVVFLAALV  203 (318)
Q Consensus       194 fD~V~~aalv  203 (318)
                      +|.|+++--|
T Consensus        93 vDgIl~DLGv  102 (305)
T TIGR00006        93 IDGILVDLGV  102 (305)
T ss_pred             ccEEEEeccC
Confidence            9999987655

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.98  E-value=0.0091  Score=55.88  Aligned_cols=101  Identities=17%  Similarity=0.165  Sum_probs=68.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--CCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--KDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--~~fD~V  197 (318)
                      .++..|++||.|++-+|.. |++.   +.+|++||+|+..++.-++.+.    ...+++++.+|+.++....  ..-...
T Consensus        29 ~~~~~VlEiGpG~G~lT~~-L~~~---~~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~l~~~~~~~~~~~~~~  100 (262)
T PF00398_consen   29 SEGDTVLEIGPGPGALTRE-LLKR---GKRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDFLKWDLYDLLKNQPLL  100 (262)
T ss_dssp             GTTSEEEEESSTTSCCHHH-HHHH---SSEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-TTTSCGGGHCSSSEEE
T ss_pred             CCCCEEEEeCCCCccchhh-Hhcc---cCcceeecCcHhHHHHHHHHhh----hcccceeeecchhccccHHhhcCCceE
Confidence            5789999999998777765 5543   5999999999988888777655    3588999999999864322  112355


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCC---eEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPG---ALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpG---g~lv~r~  231 (318)
                      +++.+   +-.--..++..+...-+.|   ..+++-.
T Consensus       101 vv~Nl---Py~is~~il~~ll~~~~~g~~~~~l~vq~  134 (262)
T PF00398_consen  101 VVGNL---PYNISSPILRKLLELYRFGRVRMVLMVQK  134 (262)
T ss_dssp             EEEEE---TGTGHHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred             EEEEe---cccchHHHHHHHhhcccccccceEEEEeh
Confidence            55664   2233456777777644443   4455533

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.97  E-value=0.0098  Score=56.43  Aligned_cols=105  Identities=13%  Similarity=0.185  Sum_probs=80.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc----C-------------------------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS----D-------------------------  170 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~----~-------------------------  170 (318)
                      ..+.|||.=||| +|--+.-+|++   |..+.|.|.|--|+-..+-+...    .                         
T Consensus        55 ~~~~~VLVPGsG-LGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~  130 (270)
T PF07942_consen   55 RSKIRVLVPGSG-LGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR  130 (270)
T ss_pred             CCccEEEEcCCC-cchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence            456799999999 78888889973   99999999999997666544331    0                         


Q ss_pred             ---------CCCCCCeEEEEccccccCcCC---CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          171 ---------PDLSTRMFFHTTDIMNVSSAL---KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       171 ---------~gl~~ri~f~~gDa~~l~~~l---~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                               .....++....||-.++-...   +.||+|.+.-++- .++.=.+.++.|.+.|||||..+=
T Consensus       131 iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID-TA~Ni~~Yi~tI~~lLkpgG~WIN  200 (270)
T PF07942_consen  131 IPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID-TAENIIEYIETIEHLLKPGGYWIN  200 (270)
T ss_pred             eCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee-chHHHHHHHHHHHHHhccCCEEEe
Confidence                     122457888889988875554   4899998776663 346678999999999999996643

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.96  E-value=0.0029  Score=58.98  Aligned_cols=97  Identities=15%  Similarity=0.132  Sum_probs=65.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE--ccccccCcCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHT--TDIMNVSSALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~--gDa~~l~~~l~~fD~  196 (318)
                      .++++||.+|+|++|..++.+|+.+  |++ |+.+|.+++..+.|+++     |...-+....  ..+.++. .-..+|+
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~~-----Ga~~~i~~~~~~~~~~~~~-~~~g~d~  190 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALSF-----GATALAEPEVLAERQGGLQ-NGRGVDV  190 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHc-----CCcEecCchhhHHHHHHHh-CCCCCCE
Confidence            5788999999999999999999864  876 99999999888887764     2211111100  0111121 1126999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+-..  |     ....++...+.++|||+++.-.
T Consensus       191 vid~~--G-----~~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       191 ALEFS--G-----ATAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             EEECC--C-----ChHHHHHHHHHhcCCCEEEEec
Confidence            88543  2     1235666788999999998765

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.96  E-value=0.0049  Score=58.26  Aligned_cols=101  Identities=24%  Similarity=0.241  Sum_probs=67.8

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc-------CCCC---------CCCeEEEEccccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS-------DPDL---------STRMFFHTTDIMN  186 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~-------~~gl---------~~ri~f~~gDa~~  186 (318)
                      ++|..||+|.+|.+......+  .|..|+.+|++++.++.+++.+.+       ...+         ..++++. .|..+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~   80 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAE   80 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHH
Confidence            589999999887665443332  488999999999999988765321       0111         1344432 33222


Q ss_pred             cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                         .....|+|+.+..-  +.+-|..+++++.+.++++.+|+...
T Consensus        81 ---a~~~aDlVieavpe--~~~~k~~~~~~l~~~~~~~~ii~snt  120 (287)
T PRK08293         81 ---AVKDADLVIEAVPE--DPEIKGDFYEELAKVAPEKTIFATNS  120 (287)
T ss_pred             ---HhcCCCEEEEeccC--CHHHHHHHHHHHHhhCCCCCEEEECc
Confidence               23478999977531  34579999999999999888775544

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=96.96  E-value=0.009  Score=57.24  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=65.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+||..|+|++|..++.+|+.  .|++|++++.+++..+.|+++     |...-+.     ..+.  ....+|+++
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~~-----Ga~~vi~-----~~~~--~~~~~d~~i  228 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALA--QGATVHVMTRGAAARRLALAL-----GAASAGG-----AYDT--PPEPLDAAI  228 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHh-----CCceecc-----cccc--CcccceEEE
Confidence            3678999999999999999999986  489999999999887777653     3321111     1111  113588777


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....++       ..+....+.+++||++++-.
T Consensus       229 ~~~~~~-------~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       229 LFAPAG-------GLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             ECCCcH-------HHHHHHHHhhCCCcEEEEEe
Confidence            554321       35777789999999998754

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.93  E-value=0.00031  Score=61.38  Aligned_cols=101  Identities=17%  Similarity=0.122  Sum_probs=64.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE-------------------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH-------------------  180 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~-------------------  180 (318)
                      .+|.+|+.+|.|..|..|..+++.+  |++|+.+|..++..+..+.+...      .+...                   
T Consensus        18 ~~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~   89 (168)
T PF01262_consen   18 VPPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESLGAY------FIEVDYEDHLERKDFDKADYYEHP   89 (168)
T ss_dssp             E-T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHTTTE------ESEETTTTTTTSB-CCHHHCHHHC
T ss_pred             CCCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcccCc------eEEEcccccccccccchhhhhHHH
Confidence            6789999999999999999999975  99999999999887776654432      12221                   


Q ss_pred             EccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       181 ~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ...-..+......+|+|+..++.+-...+ .-+-++..+.|+||.+++=
T Consensus        90 ~~~~~~f~~~i~~~d~vI~~~~~~~~~~P-~lvt~~~~~~m~~gsvIvD  137 (168)
T PF01262_consen   90 ESYESNFAEFIAPADIVIGNGLYWGKRAP-RLVTEEMVKSMKPGSVIVD  137 (168)
T ss_dssp             CHHHHHHHHHHHH-SEEEEHHHBTTSS----SBEHHHHHTSSTTEEEEE
T ss_pred             HHhHHHHHHHHhhCcEEeeecccCCCCCC-EEEEhHHhhccCCCceEEE
Confidence            00001111222367999988876433333 3366677788998776643

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.87  E-value=0.0044  Score=58.55  Aligned_cols=101  Identities=16%  Similarity=0.136  Sum_probs=66.6

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-C--------CCCeEEEEcccccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-L--------STRMFFHTTDIMNV  187 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l--------~~ri~f~~gDa~~l  187 (318)
                      ++|..||+|.+|.+......+  .|..|+.+|+|++.++.+++.....      .| +        ..++++. .|..  
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~--   76 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLK--   76 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHH--
Confidence            589999999887764333222  4889999999999999886532210      01 1        0123332 2222  


Q ss_pred             CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          188 SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 ~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       ......|+|+.+...  +..-|..++.++.+.++||.+++...
T Consensus        77 -~~~~~aD~Vi~avpe--~~~~k~~~~~~l~~~~~~~~il~~~t  117 (288)
T PRK09260         77 -AAVADADLVIEAVPE--KLELKKAVFETADAHAPAECYIATNT  117 (288)
T ss_pred             -HhhcCCCEEEEeccC--CHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence             233578999976532  44568899999999999998876654

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.87  E-value=0.0013  Score=58.65  Aligned_cols=102  Identities=30%  Similarity=0.340  Sum_probs=60.5

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCC---------CCCeEEEEccccccCcC
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDL---------STRMFFHTTDIMNVSSA  190 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl---------~~ri~f~~gDa~~l~~~  190 (318)
                      +||..||.|-.|++. .++|+   .|.+|+|+|+|++.++.-++-..-  ..|+         ..|.+|. .|..+   .
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~---~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~---a   73 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAE---KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEE---A   73 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHH---TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHH---H
T ss_pred             CEEEEECCCcchHHHHHHHHh---CCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhh---h
Confidence            589999999998765 55665   499999999999988776522110  0111         2445543 22222   1


Q ss_pred             CCCccEEEeccccCC------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 LKDYEVVFLAALVGM------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 l~~fD~V~~aalvgm------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....|++|+.---+.      +...-.++++.+.+.+++|.++++++
T Consensus        74 i~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S  120 (185)
T PF03721_consen   74 IKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES  120 (185)
T ss_dssp             HHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             hhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence            235788886542211      22335678999999999999999998

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=96.84  E-value=0.0038  Score=59.16  Aligned_cols=88  Identities=19%  Similarity=0.232  Sum_probs=60.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++++||.+|+|++|+.++.+|+.+  |++ |..+|.+++..+.|.+..     .      +  |..+.  ....||+||
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~--G~~~v~~~~~~~~rl~~a~~~~-----~------i--~~~~~--~~~g~Dvvi  205 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAA--GGSPPAVWETNPRRRDGATGYE-----V------L--DPEKD--PRRDYRAIY  205 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHhhhhcc-----c------c--Chhhc--cCCCCCEEE
Confidence            4578999999999999999999864  776 677899887766654321     0      0  11110  113699988


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -..  |     ....++...+.|+|||++++-.
T Consensus       206 d~~--G-----~~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       206 DAS--G-----DPSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             ECC--C-----CHHHHHHHHHhhhcCcEEEEEe
Confidence            443  2     1235667778999999998754

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.79  E-value=0.0045  Score=58.83  Aligned_cols=98  Identities=16%  Similarity=0.115  Sum_probs=65.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc---ccccCcCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD---IMNVSSALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD---a~~l~~~l~~f  194 (318)
                      ..++++||.+|+|++|..++.+|+.  .|++ |+++|.+++..+.++++     |...-+.....+   +.++. ....|
T Consensus       161 ~~~g~~vlV~G~G~vG~~~~~~ak~--~G~~~vi~~~~~~~~~~~~~~~-----ga~~~i~~~~~~~~~~~~~~-~~~~~  232 (339)
T cd08239         161 VSGRDTVLVVGAGPVGLGALMLARA--LGAEDVIGVDPSPERLELAKAL-----GADFVINSGQDDVQEIRELT-SGAGA  232 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHh-----CCCEEEcCCcchHHHHHHHh-CCCCC
Confidence            3678999999999999999999986  4888 99999999888877654     321111111111   11121 12369


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+-..-       ....+....+.|++||++++-.
T Consensus       233 d~vid~~g-------~~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         233 DVAIECSG-------NTAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             CEEEECCC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence            99985431       1224556678999999998754

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.78  E-value=0.015  Score=55.05  Aligned_cols=100  Identities=21%  Similarity=0.251  Sum_probs=66.8

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CCC-C--------CCeEEEEccccc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PDL-S--------TRMFFHTTDIMN  186 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~gl-~--------~ri~f~~gDa~~  186 (318)
                      -++|.+||+|.+|.+.......  .|..|+.+|++++.++.+.+.+...      .|. .        .++++. .|.  
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--   78 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL--   78 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH--
Confidence            3689999999988765443332  4889999999999998865432210      111 1        234442 232  


Q ss_pred             cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                        ......|+|+.+...  +..-|..+++++...++|+.+|+..
T Consensus        79 --~~~~~aD~Vieavpe--~~~~k~~~~~~l~~~~~~~~ii~s~  118 (292)
T PRK07530         79 --EDLADCDLVIEAATE--DETVKRKIFAQLCPVLKPEAILATN  118 (292)
T ss_pred             --HHhcCCCEEEEcCcC--CHHHHHHHHHHHHhhCCCCcEEEEc
Confidence              134578999977522  3456889999999999999887643

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.77  E-value=0.0076  Score=57.30  Aligned_cols=123  Identities=13%  Similarity=0.173  Sum_probs=74.2

Q ss_pred             hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHH-----hCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC-CeEE
Q 021008          106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAI-----NHLTTTCFDNYDIDPSANSKALSLVSSDPDLST-RMFF  179 (318)
Q Consensus       106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~-----~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~-ri~f  179 (318)
                      ++++-...+.   ..++.+|+|-.||.+++-.-.+-.     .......+.|+|+|+.++..|+-...- .|... ...+
T Consensus        34 i~~l~~~~~~---~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~i  109 (311)
T PF02384_consen   34 IVDLMVKLLN---PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNINI  109 (311)
T ss_dssp             HHHHHHHHHT---T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCEE
T ss_pred             HHHHHHhhhh---ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hccccccccc
Confidence            4555444442   366779999999987665433321     012689999999999999999866543 34433 3568


Q ss_pred             EEccccccCcC--CCCccEEEeccccCCC--------------------hhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          180 HTTDIMNVSSA--LKDYEVVFLAALVGMD--------------------KDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       180 ~~gDa~~l~~~--l~~fD~V~~aalvgm~--------------------~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ..+|....+..  ...||+|+..--.+..                    ...-..++.++.+.|++||++++--+
T Consensus       110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence            89998765443  2489998732111100                    01113588999999999998766543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.73  E-value=0.0051  Score=58.83  Aligned_cols=89  Identities=10%  Similarity=0.113  Sum_probs=61.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..++||+.||.|..|.+.+..++++  |++|+.+|.+++..+.++.     .|.    +++  +..++.....++|+||.
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~-----~G~----~~~--~~~~l~~~l~~aDiVI~  216 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITE-----MGL----SPF--HLSELAEEVGKIDIIFN  216 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-----cCC----eee--cHHHHHHHhCCCCEEEE
Confidence            3689999999999999988888764  8999999999887655543     232    222  11233334458999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      ..    +.   .-+-++..+.|+||++++
T Consensus       217 t~----p~---~~i~~~~l~~~~~g~vII  238 (296)
T PRK08306        217 TI----PA---LVLTKEVLSKMPPEALII  238 (296)
T ss_pred             CC----Ch---hhhhHHHHHcCCCCcEEE
Confidence            64    11   123355667899988765

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.62  E-value=0.013  Score=55.82  Aligned_cols=92  Identities=21%  Similarity=0.195  Sum_probs=59.3

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      ++|+.||+|.+|.+......+.....+|+++|.+++..+.+++     .|....   ...+..   ......|+|+++. 
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-----~g~~~~---~~~~~~---~~~~~aDvViiav-   74 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-----LGLGDR---VTTSAA---EAVKGADLVILCV-   74 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----CCCCce---ecCCHH---HHhcCCCEEEECC-
Confidence            6899999998887654433332112489999999988776653     232111   111211   2234789999886 


Q ss_pred             cCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          203 VGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                         +......+++.+...++||+.++.
T Consensus        75 ---p~~~~~~v~~~l~~~l~~~~iv~d   98 (307)
T PRK07502         75 ---PVGASGAVAAEIAPHLKPGAIVTD   98 (307)
T ss_pred             ---CHHHHHHHHHHHHhhCCCCCEEEe
Confidence               334556788888888999886643

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.61  E-value=0.0039  Score=59.34  Aligned_cols=96  Identities=10%  Similarity=0.133  Sum_probs=73.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+.-++++|||-+=++..      .|.+.++|.|++...+.-|++.     |   ......+|+..+|.....||..+.
T Consensus        44 ~~gsv~~d~gCGngky~~~------~p~~~~ig~D~c~~l~~~ak~~-----~---~~~~~~ad~l~~p~~~~s~d~~ls  109 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLGV------NPLCLIIGCDLCTGLLGGAKRS-----G---GDNVCRADALKLPFREESFDAALS  109 (293)
T ss_pred             CCcceeeecccCCcccCcC------CCcceeeecchhhhhccccccC-----C---CceeehhhhhcCCCCCCccccchh
Confidence            5689999999997533321      2788999999999887776531     1   115677999999988889998775


Q ss_pred             cccc-CC-ChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALV-GM-DKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalv-gm-~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      -|.+ ++ ....+.++++++.+.++|||...+
T Consensus       110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  110 IAVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            4434 33 568889999999999999997544

>PLN02740 Alcohol dehydrogenase-like

Probab=96.57  E-value=0.0088  Score=58.40  Aligned_cols=97  Identities=16%  Similarity=0.194  Sum_probs=64.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE--ccc----cccCcCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT--TDI----MNVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~--gDa----~~l~~~l  191 (318)
                      ..++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.++++     |...-+....  .|.    .++..  
T Consensus       196 ~~~g~~VlV~G~G~vG~~a~q~ak~--~G~~~Vi~~~~~~~r~~~a~~~-----Ga~~~i~~~~~~~~~~~~v~~~~~--  266 (381)
T PLN02740        196 VQAGSSVAIFGLGAVGLAVAEGARA--RGASKIIGVDINPEKFEKGKEM-----GITDFINPKDSDKPVHERIREMTG--  266 (381)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHHc-----CCcEEEecccccchHHHHHHHHhC--
Confidence            3678999999999999999999986  488 699999999988888653     3322121111  011    11211  


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      +.+|+|+-..  |     ....+....+.+++| |++++-.
T Consensus       267 ~g~dvvid~~--G-----~~~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        267 GGVDYSFECA--G-----NVEVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             CCCCEEEECC--C-----ChHHHHHHHHhhhcCCCEEEEEc
Confidence            1699888543  2     123566666788897 8887655

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.56  E-value=0.0051  Score=59.73  Aligned_cols=99  Identities=14%  Similarity=0.165  Sum_probs=65.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccCcC-CCCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVSSA-LKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~~~-l~~fD  195 (318)
                      ..++++||..|+|++|..++.+|+.  .|+ .|+++|.+++..+.++++     |...-+.....|.. .+... .+.+|
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~--~G~~~Vi~~~~~~~r~~~a~~~-----Ga~~~i~~~~~~~~~~i~~~~~~g~d  261 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVA--AGASQVVAVDLNEDKLALAREL-----GATATVNAGDPNAVEQVRELTGGGVD  261 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHHc-----CCceEeCCCchhHHHHHHHHhCCCCC
Confidence            3678999999999999999999986  488 699999999988887653     32111111111111 11100 12689


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+-..  |     ....+....+.+++||+++.-.
T Consensus       262 ~vid~~--G-----~~~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         262 YAFEMA--G-----SVPALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             EEEECC--C-----ChHHHHHHHHHHhcCCEEEEEc
Confidence            888443  2     1235666678999999988755

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.56  E-value=0.0074  Score=58.00  Aligned_cols=99  Identities=12%  Similarity=0.145  Sum_probs=63.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc---cccc-cC--cCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT---DIMN-VS--SALK  192 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g---Da~~-l~--~~l~  192 (318)
                      ..++.+|+..|+|++|..++.+|+.+  |++|+++|.+++..+.++++     |...-+.....   |..+ +.  ....
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~~-----Ga~~~i~~~~~~~~~~~~~~~~~t~~~  236 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKGF-----GADLTLNPKDKSAREVKKLIKAFAKAR  236 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh-----CCceEecCccccHHHHHHHHHhhcccC
Confidence            36789999999999999999999864  88999999999988877653     32111111111   1111 10  0112


Q ss_pred             Ccc----EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYE----VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD----~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|    +||-..  |     ....+....+.|++||++++-.
T Consensus       237 g~d~~~d~v~d~~--g-----~~~~~~~~~~~l~~~G~iv~~G  272 (349)
T TIGR03201       237 GLRSTGWKIFECS--G-----SKPGQESALSLLSHGGTLVVVG  272 (349)
T ss_pred             CCCCCcCEEEECC--C-----ChHHHHHHHHHHhcCCeEEEEC
Confidence            454    565332  2     1235556678999999998765

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.54  E-value=0.009  Score=58.45  Aligned_cols=105  Identities=14%  Similarity=0.106  Sum_probs=70.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc-c----cccCcCCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD-I----MNVSSALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD-a----~~l~~~l~~  193 (318)
                      .++.+||.+|+|++|..++.+|+.+  |. +|+++|.+++..+.++++..    . .-+.+...+ .    .++. ....
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~--g~~~vi~~~~~~~~~~~~~~~~~----~-~vi~~~~~~~~~~~l~~~~-~~~~  254 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLL--GAERVIAIDRVPERLEMARSHLG----A-ETINFEEVDDVVEALRELT-GGRG  254 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCC----c-EEEcCCcchHHHHHHHHHc-CCCC
Confidence            5778999999999999999999874  76 69999999999888877521    1 112222221 1    1121 1126


Q ss_pred             ccEEEeccccC--------------CChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          194 YEVVFLAALVG--------------MDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       194 fD~V~~aalvg--------------m~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +|+|+-...-.              .+..++...+.++.+.|+|||+++.-..
T Consensus       255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            89887532100              0112346688999999999999988764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.52  E-value=0.0072  Score=57.50  Aligned_cols=100  Identities=16%  Similarity=0.164  Sum_probs=63.9

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC----------CCCeEEEEccccccCcCC
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL----------STRMFFHTTDIMNVSSAL  191 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl----------~~ri~f~~gDa~~l~~~l  191 (318)
                      -++|.+||+|.+|.+......+  .|.+|+.+|.+++.++.+++......|.          ..++++. .|..+   ..
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~---~~   77 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAA---AV   77 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHH---Hh
Confidence            3689999999888765443332  4889999999999998887642210111          0123332 22222   23


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ...|+|+++--.  +...|..++.++.+.++++.+++.
T Consensus        78 ~~aDlVi~av~~--~~~~~~~v~~~l~~~~~~~~ii~s  113 (311)
T PRK06130         78 SGADLVIEAVPE--KLELKRDVFARLDGLCDPDTIFAT  113 (311)
T ss_pred             ccCCEEEEeccC--cHHHHHHHHHHHHHhCCCCcEEEE
Confidence            478999987521  224588899999888877766543

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.48  E-value=0.026  Score=53.45  Aligned_cols=99  Identities=25%  Similarity=0.317  Sum_probs=66.0

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc------CCCC-C--------CCeEEEEccccc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS------DPDL-S--------TRMFFHTTDIMN  186 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~------~~gl-~--------~ri~f~~gDa~~  186 (318)
                      -++|.+||+|.+|..-......  .|.+|+.+|.+++.++.+++.+.+      ..|. .        .++.+. .+.  
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~--   78 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAA--AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNL--   78 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCH--
Confidence            3689999999887665443332  488999999999998876553221      0121 0        123332 222  


Q ss_pred             cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                        ......|+|+.+..-  +...|..++.++...++|+.+|+.
T Consensus        79 --~~~~~aD~Vieav~e--~~~~k~~v~~~l~~~~~~~~il~s  117 (295)
T PLN02545         79 --EELRDADFIIEAIVE--SEDLKKKLFSELDRICKPSAILAS  117 (295)
T ss_pred             --HHhCCCCEEEEcCcc--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence              123478999977522  467899999999999999987764

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.41  E-value=0.009  Score=59.23  Aligned_cols=106  Identities=15%  Similarity=0.126  Sum_probs=78.4

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC-CeEEEEccccccCc-CCCCccEEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST-RMFFHTTDIMNVSS-ALKDYEVVF  198 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~-ri~f~~gDa~~l~~-~l~~fD~V~  198 (318)
                      .+-+|||.=|| -|+=++.+|++......|+.-|+|+++++..+++++. -++.. ++++.+.|+..+.. ....||+|=
T Consensus        49 ~~~~~lDalaa-sGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~-N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID  126 (377)
T PF02005_consen   49 GPIRVLDALAA-SGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL-NGLEDERIEVSNMDANVLLYSRQERFDVID  126 (377)
T ss_dssp             S-EEEEETT-T-TSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH-CT-SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred             CCceEEecccc-ccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh-ccccCceEEEehhhHHHHhhhccccCCEEE
Confidence            45699999888 5899999998742235899999999999999999987 78877 89999999987643 234899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ++-+     .....+++...+.++.||.|.+...+
T Consensus       127 lDPf-----GSp~pfldsA~~~v~~gGll~vTaTD  156 (377)
T PF02005_consen  127 LDPF-----GSPAPFLDSALQAVKDGGLLCVTATD  156 (377)
T ss_dssp             E--S-----S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred             eCCC-----CCccHhHHHHHHHhhcCCEEEEeccc
Confidence            9975     35577999999999999999997743

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.41  E-value=0.0069  Score=58.42  Aligned_cols=97  Identities=18%  Similarity=0.071  Sum_probs=64.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc----ccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM----NVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~----~l~~~l~~f  194 (318)
                      .++++||..|+|++|..++.+|+.  .|+. |+++|.+++..+.++++     |...-+.....|..    ++. .-..+
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~~-----Ga~~~i~~~~~~~~~~i~~~~-~~~g~  246 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWAREF-----GATHTVNSSGTDPVEAIRALT-GGFGA  246 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHc-----CCceEEcCCCcCHHHHHHHHh-CCCCC
Confidence            678999999999999999999986  4884 99999999888887643     32111111111111    111 11268


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+-..  |-     ...++...+.+++||++++-.
T Consensus       247 d~vid~~--g~-----~~~~~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       247 DVVIDAV--GR-----PETYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             CEEEECC--CC-----HHHHHHHHHHhccCCEEEEEC
Confidence            9888433  21     234566678999999998755

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.40  E-value=0.06  Score=49.83  Aligned_cols=104  Identities=13%  Similarity=0.157  Sum_probs=67.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---cCCCCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---SALKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---~~l~~fD  195 (318)
                      ..++.+||.+|.. .|.|.-.++.--.+...|.+|+.++....---.++++    ..+|-=+.+|+..-.   .-....|
T Consensus        71 ik~gskVLYLGAa-sGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----R~NIiPIl~DAr~P~~Y~~lv~~VD  145 (229)
T PF01269_consen   71 IKPGSKVLYLGAA-SGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----RPNIIPILEDARHPEKYRMLVEMVD  145 (229)
T ss_dssp             --TT-EEEEETTT-TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----STTEEEEES-TTSGGGGTTTS--EE
T ss_pred             CCCCCEEEEeccc-CCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----CCceeeeeccCCChHHhhccccccc
Confidence            4788999999997 5788777776545688999999999554433333333    367777889998521   1223789


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +||.+--   ++.+-.=+..+....||+||.+++-
T Consensus       146 vI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  146 VIFQDVA---QPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             EEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEecCC---ChHHHHHHHHHHHhhccCCcEEEEE
Confidence            9997742   2234344555666799999988764

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PLN02494 adenosylhomocysteinase

Probab=96.40  E-value=0.023  Score=57.82  Aligned_cols=146  Identities=10%  Similarity=0.083  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHh---hcC------CCCcccccCCcChhhHHHhhHHHHHHHhhcc--cCCCCEEEE
Q 021008           59 QDIRSKLIRLCGEAEGLLESHFSSIL---ASF------ENPIANLNIFPYYSNYIKLSQLEFNILTQHC--SRFPTKIAF  127 (318)
Q Consensus        59 ~~l~~~l~~l~~~ae~~lE~~~A~~l---~~~------~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~--~~~~~rVL~  127 (318)
                      .++.+.++=.+-+.+.-.-..++..-   +..      +.+.+++     |||-.-.-+.-++.+.+..  ...+++|+.
T Consensus       185 ~~~~~~i~G~~EeTttGv~Rl~~m~~~g~L~~Pvi~vnds~~K~~-----fDn~yGtgqS~~d~i~r~t~i~LaGKtVvV  259 (477)
T PLN02494        185 HKMKERLVGVSEETTTGVKRLYQMQKNGTLLFPAINVNDSVTKSK-----FDNLYGCRHSLPDGLMRATDVMIAGKVAVI  259 (477)
T ss_pred             hHHHHhhcCCcccccHHHHHHHHHHHCCCCCCCEEEEcChhhhhh-----hhccccccccHHHHHHHhcCCccCCCEEEE
Confidence            44566666666666555555554222   111      3333332     3332222222234444332  257899999


Q ss_pred             EccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCCCh
Q 021008          128 IGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDK  207 (318)
Q Consensus       128 IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~~  207 (318)
                      +|.|++|......++.+  |++|+.+|+|+.....|..     .|..    +.  +..+   .+...|+|+...      
T Consensus       260 iGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~-----~G~~----vv--~leE---al~~ADVVI~tT------  317 (477)
T PLN02494        260 CGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM-----EGYQ----VL--TLED---VVSEADIFVTTT------  317 (477)
T ss_pred             ECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh-----cCCe----ec--cHHH---HHhhCCEEEECC------
Confidence            99999999988888754  9999999999965444422     2221    11  2222   234689998643      


Q ss_pred             hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          208 DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       208 ~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+.-+..+..+.|||||+|+--.
T Consensus       318 Gt~~vI~~e~L~~MK~GAiLiNvG  341 (477)
T PLN02494        318 GNKDIIMVDHMRKMKNNAIVCNIG  341 (477)
T ss_pred             CCccchHHHHHhcCCCCCEEEEcC
Confidence            233334466678999999987654

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=96.39  E-value=0.0051  Score=62.66  Aligned_cols=124  Identities=15%  Similarity=0.206  Sum_probs=85.5

Q ss_pred             CcChhhHHHhhHHHHHHHhhccc-CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC
Q 021008           97 FPYYSNYIKLSQLEFNILTQHCS-RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST  175 (318)
Q Consensus        97 fpY~~ny~~L~~~E~~~l~~~~~-~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~  175 (318)
                      .-+|++--...+.-|..++.++. +.++-++||=||+ |...+.+|+   +-.+|+||+++|++++-|++++.. -|. .
T Consensus       358 ~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGT-G~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~-Ngi-s  431 (534)
T KOG2187|consen  358 GAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGT-GTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQI-NGI-S  431 (534)
T ss_pred             chhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecC-Cceehhhhc---cccceeeeecChhhcchhhhcchh-cCc-c
Confidence            45666666666666777777765 6678899999995 777788987   357999999999999999999998 787 7


Q ss_pred             CeEEEEccccccCcCC-C-Ccc----EEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          176 RMFFHTTDIMNVSSAL-K-DYE----VVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       176 ri~f~~gDa~~l~~~l-~-~fD----~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.+|++|-+.++-..+ + .+|    +++++= =-|+    -.+++..+.+.-+|- ++++.+
T Consensus       432 Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Gl----h~~~ik~l~~~~~~~-rlvyvS  489 (534)
T KOG2187|consen  432 NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGL----HMKVIKALRAYKNPR-RLVYVS  489 (534)
T ss_pred             ceeeeecchhhccchhcccCCCCCceEEEECCCcccc----cHHHHHHHHhccCcc-ceEEEE
Confidence            8999999877753322 2 233    344432 1133    245676676554443 444444

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.39  E-value=0.013  Score=58.72  Aligned_cols=146  Identities=15%  Similarity=0.032  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHh---hcC------CCCcccccCCcChhhHHHhhHHHHHHHhhcc--cCCCCEEE
Q 021008           58 VQDIRSKLIRLCGEAEGLLESHFSSIL---ASF------ENPIANLNIFPYYSNYIKLSQLEFNILTQHC--SRFPTKIA  126 (318)
Q Consensus        58 ~~~l~~~l~~l~~~ae~~lE~~~A~~l---~~~------~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~--~~~~~rVL  126 (318)
                      -+++.+.++-.+-+.+.-..++++..-   +..      +.+.+++....|-     .-+.-++.+.+..  ...+++|+
T Consensus       125 ~~~~~~~~~G~~EeTttGv~rl~~~~~~~~L~~Pvi~vnds~~K~~fDn~yg-----~g~s~~~~i~r~t~~~l~Gk~Vv  199 (406)
T TIGR00936       125 RPELLEKIIGGSEETTTGVIRLRAMEAEGVLKFPAINVNDAYTKSLFDNRYG-----TGQSTIDGILRATNLLIAGKTVV  199 (406)
T ss_pred             hhhhhhccEEEeecchHHHHHHHHHHHcCCCCCcEEEecchhhchhhhcccc-----cchhHHHHHHHhcCCCCCcCEEE
Confidence            344444455455555555555554321   121      3444444444442     2222223333321  25789999


Q ss_pred             EEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCCC
Q 021008          127 FIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMD  206 (318)
Q Consensus       127 ~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~  206 (318)
                      .+|+|++|......++.  .|++|+.+|+||.....|.    . .|.    .+.  +..+   .....|+|+.+.  |  
T Consensus       200 ViG~G~IG~~vA~~ak~--~Ga~ViV~d~dp~r~~~A~----~-~G~----~v~--~lee---al~~aDVVItaT--G--  259 (406)
T TIGR00936       200 VAGYGWCGKGIAMRARG--MGARVIVTEVDPIRALEAA----M-DGF----RVM--TMEE---AAKIGDIFITAT--G--  259 (406)
T ss_pred             EECCCHHHHHHHHHHhh--CcCEEEEEeCChhhHHHHH----h-cCC----EeC--CHHH---HHhcCCEEEECC--C--
Confidence            99999999999888875  4999999999996543332    2 222    221  2222   224679987643  1  


Q ss_pred             hhHHHHHHH-HHHHhccCCeEEEEEc
Q 021008          207 KDEKIRVID-HLAKYMAPGALLMLRS  231 (318)
Q Consensus       207 ~~~k~~vl~-~l~r~LkpGg~lv~r~  231 (318)
                        . ..++. +....||+|++++.-.
T Consensus       260 --~-~~vI~~~~~~~mK~GailiN~G  282 (406)
T TIGR00936       260 --N-KDVIRGEHFENMKDGAIVANIG  282 (406)
T ss_pred             --C-HHHHHHHHHhcCCCCcEEEEEC
Confidence              2 33444 4678999999886644

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.37  E-value=0.014  Score=56.65  Aligned_cols=97  Identities=9%  Similarity=0.125  Sum_probs=61.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++||..|+|++|+.++.+|+.+  |++|+.++.+++....   ..++ .|..  -.+...+...+....+.+|+|+-
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~---~~~~-~Ga~--~vi~~~~~~~~~~~~~~~D~vid  253 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDE---AINR-LGAD--SFLVSTDPEKMKAAIGTMDYIID  253 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhh---HHHh-CCCc--EEEcCCCHHHHHhhcCCCCEEEE
Confidence            5789999999999999999999864  8999999888754322   2223 3431  11111111111111135899884


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..  |     -...+++..+.+++||+++.-.
T Consensus       254 ~~--g-----~~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        254 TV--S-----AVHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             CC--C-----CHHHHHHHHHHhcCCcEEEEeC
Confidence            33  2     1225666789999999998654

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.34  E-value=0.02  Score=58.82  Aligned_cols=75  Identities=19%  Similarity=0.084  Sum_probs=50.2

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCC-----C--CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc-----C
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHL-----T--TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV-----S  188 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~-----~--ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l-----~  188 (318)
                      .+.+|+|.|||.+++..- ++++..     .  ...++|+|||+.++..|+.++.. .+ ...+.++.+|...-     .
T Consensus        31 ~~~~ilDP~cGsG~fl~~-~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~-~~-~~~~~i~~~d~l~~~~~~~~  107 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAA-LLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE-FA-LLEINVINFNSLSYVLLNIE  107 (524)
T ss_pred             cceEEEeCCCCccHHHHH-HHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh-cC-CCCceeeecccccccccccc
Confidence            457999999998766654 333221     1  25799999999999999988776 44 23456666664421     1


Q ss_pred             cCCCCccEEE
Q 021008          189 SALKDYEVVF  198 (318)
Q Consensus       189 ~~l~~fD~V~  198 (318)
                      ...+.||+|+
T Consensus       108 ~~~~~fD~II  117 (524)
T TIGR02987       108 SYLDLFDIVI  117 (524)
T ss_pred             cccCcccEEE
Confidence            1224799987

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=96.33  E-value=0.0097  Score=56.92  Aligned_cols=98  Identities=19%  Similarity=0.203  Sum_probs=63.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc---ccccCcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD---IMNVSSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD---a~~l~~~l~~fD  195 (318)
                      .++++||..|+|++|..++.+|+.+  |++ |+++|.+++..+.++++     |...-+.....+   +.++. .-..+|
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~-----Ga~~~i~~~~~~~~~~~~~~-~~~~~d  230 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKSL-----GAMQTFNSREMSAPQIQSVL-RELRFD  230 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHc-----CCceEecCcccCHHHHHHHh-cCCCCC
Confidence            6789999999999999999999864  886 79999999888777543     321111111111   11111 112588


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+++++ +|    . ...+.+..+.|++||++++-.
T Consensus       231 ~~v~d~-~G----~-~~~~~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        231 QLILET-AG----V-PQTVELAIEIAGPRAQLALVG  260 (347)
T ss_pred             eEEEEC-CC----C-HHHHHHHHHHhhcCCEEEEEc
Confidence            444454 22    1 346677789999999998764

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.31  E-value=0.0026  Score=64.69  Aligned_cols=117  Identities=11%  Similarity=0.143  Sum_probs=69.7

Q ss_pred             hhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEE---eCChHHHHHHHHHhhcCCCCCCCe
Q 021008          101 SNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNY---DIDPSANSKALSLVSSDPDLSTRM  177 (318)
Q Consensus       101 ~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gv---Did~~ai~~Ar~~~~~~~gl~~ri  177 (318)
                      +.|+.-+..-.....  ....-+.+||||||...+.+.++.+    +..+..+   |..+..++.|-    + -|+..-+
T Consensus        99 ~~Yid~i~~~~~~~~--~~g~iR~~LDvGcG~aSF~a~l~~r----~V~t~s~a~~d~~~~qvqfal----e-RGvpa~~  167 (506)
T PF03141_consen   99 DHYIDQIAEMIPLIK--WGGGIRTALDVGCGVASFGAYLLER----NVTTMSFAPNDEHEAQVQFAL----E-RGVPAMI  167 (506)
T ss_pred             HHHHHHHHHHhhccc--cCCceEEEEeccceeehhHHHHhhC----CceEEEcccccCCchhhhhhh----h-cCcchhh
Confidence            466655444333211  1234478999999988888765543    4443333   33333444442    2 2332222


Q ss_pred             EEEEccccccCcCCCCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          178 FFHTTDIMNVSSALKDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       178 ~f~~gDa~~l~~~l~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...  -...||+..+.||+|..+. ++++... ..-+|-++-|+|||||.+++..
T Consensus       168 ~~~--~s~rLPfp~~~fDmvHcsrc~i~W~~~-~g~~l~evdRvLRpGGyfv~S~  219 (506)
T PF03141_consen  168 GVL--GSQRLPFPSNAFDMVHCSRCLIPWHPN-DGFLLFEVDRVLRPGGYFVLSG  219 (506)
T ss_pred             hhh--ccccccCCccchhhhhcccccccchhc-ccceeehhhhhhccCceEEecC
Confidence            211  1135888888999998664 4555432 2568899999999999998866

; GO: 0008168 methyltransferase activity

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.24  E-value=0.02  Score=55.44  Aligned_cols=90  Identities=16%  Similarity=0.143  Sum_probs=59.9

Q ss_pred             hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc
Q 021008          106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM  185 (318)
Q Consensus       106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~  185 (318)
                      |.+.-.+.|.   +.++...+|-=-|.+|.|...|.+  +++++++|+|.||+|++.|++....   .++|+.|+.++-.
T Consensus         8 ll~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~--~~~~~li~~DrD~~a~~~a~~~l~~---~~~r~~~~~~~F~   79 (310)
T PF01795_consen    8 LLKEVLEALN---PKPGGIYVDCTFGGGGHSKAILEK--LPNGRLIGIDRDPEALERAKERLKK---FDDRFIFIHGNFS   79 (310)
T ss_dssp             THHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT---TT-EEEEEES-HHHHHHHHCCTCC---CCTTEEEEES-GG
T ss_pred             cHHHHHHhhC---cCCCceEEeecCCcHHHHHHHHHh--CCCCeEEEecCCHHHHHHHHHHHhh---ccceEEEEeccHH
Confidence            4444455443   467778899766667899877754  4779999999999999999988776   4799999999987


Q ss_pred             ccCc------CCCCccEEEecccc
Q 021008          186 NVSS------ALKDYEVVFLAALV  203 (318)
Q Consensus       186 ~l~~------~l~~fD~V~~aalv  203 (318)
                      ++..      ....+|.|+++-.|
T Consensus        80 ~l~~~l~~~~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   80 NLDEYLKELNGINKVDGILFDLGV  103 (310)
T ss_dssp             GHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred             HHHHHHHHccCCCccCEEEEcccc
Confidence            7531      33478988877644

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.23  E-value=0.019  Score=57.80  Aligned_cols=147  Identities=12%  Similarity=0.087  Sum_probs=84.0

Q ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHh---hcC------CCCcccccCCcChhhHHHhhHHHHHHHhhcc--cCCCCEE
Q 021008           57 SVQDIRSKLIRLCGEAEGLLESHFSSIL---ASF------ENPIANLNIFPYYSNYIKLSQLEFNILTQHC--SRFPTKI  125 (318)
Q Consensus        57 ~~~~l~~~l~~l~~~ae~~lE~~~A~~l---~~~------~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~--~~~~~rV  125 (318)
                      .-+++.+.++-.+-+.+.-..+.++..-   +..      +.+...     .|+|-.-.-+--+..+.+..  ...+++|
T Consensus       141 ~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~-----~~dn~~gt~~s~~~ai~rat~~~l~Gk~V  215 (425)
T PRK05476        141 ERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAINVNDSVTKS-----KFDNRYGTGESLLDGIKRATNVLIAGKVV  215 (425)
T ss_pred             HhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEecCCcccCc-----cccccHHHHhhhHHHHHHhccCCCCCCEE
Confidence            3344445555555555555555554321   111      223332     33433333333344333331  2478999


Q ss_pred             EEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCC
Q 021008          126 AFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGM  205 (318)
Q Consensus       126 L~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm  205 (318)
                      +.+|+|++|......++.  -|++|+.+|+|+.....|.    . .|.    ++  .+..++   ...+|+|+.+.  | 
T Consensus       216 lViG~G~IG~~vA~~lr~--~Ga~ViV~d~dp~ra~~A~----~-~G~----~v--~~l~ea---l~~aDVVI~aT--G-  276 (425)
T PRK05476        216 VVAGYGDVGKGCAQRLRG--LGARVIVTEVDPICALQAA----M-DGF----RV--MTMEEA---AELGDIFVTAT--G-  276 (425)
T ss_pred             EEECCCHHHHHHHHHHHh--CCCEEEEEcCCchhhHHHH----h-cCC----Ee--cCHHHH---HhCCCEEEECC--C-
Confidence            999999999988888875  4999999999996544332    1 222    11  122222   24789998654  2 


Q ss_pred             ChhHHHHHHH-HHHHhccCCeEEEEEc
Q 021008          206 DKDEKIRVID-HLAKYMAPGALLMLRS  231 (318)
Q Consensus       206 ~~~~k~~vl~-~l~r~LkpGg~lv~r~  231 (318)
                         .+ .++. +..+.||+|++++.-.
T Consensus       277 ---~~-~vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        277 ---NK-DVITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             ---CH-HHHHHHHHhcCCCCCEEEEcC
Confidence               22 3554 6778999999886644

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.20  E-value=0.039  Score=51.96  Aligned_cols=86  Identities=22%  Similarity=0.209  Sum_probs=57.4

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecccc
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALV  203 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalv  203 (318)
                      +|..||+|.+|.+.....++  .|.+|+++|.+++..+.+.+.     |...   ....+.    ......|+|+++.  
T Consensus         2 ~I~IIG~G~mG~sla~~L~~--~g~~V~~~d~~~~~~~~a~~~-----g~~~---~~~~~~----~~~~~aDlVilav--   65 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRS--LGHTVYGVSRRESTCERAIER-----GLVD---EASTDL----SLLKDCDLVILAL--   65 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHC-----CCcc---cccCCH----hHhcCCCEEEEcC--
Confidence            79999999887764333332  378999999999888776542     2211   111111    1234789999886  


Q ss_pred             CCChhHHHHHHHHHHHhccCCeEE
Q 021008          204 GMDKDEKIRVIDHLAKYMAPGALL  227 (318)
Q Consensus       204 gm~~~~k~~vl~~l~r~LkpGg~l  227 (318)
                        +...-.++++++...++|+.++
T Consensus        66 --p~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         66 --PIGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             --CHHHHHHHHHHHHHhCCCCcEE
Confidence              4445567888998888887655

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.16  E-value=0.023  Score=55.29  Aligned_cols=97  Identities=16%  Similarity=0.170  Sum_probs=64.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE--cc----ccccCcCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT--TD----IMNVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~--gD----a~~l~~~l  191 (318)
                      ..++++||..|+|++|..++.+|+.+  |+ +|+++|.+++..+.++++     |...-+....  .+    +.++..  
T Consensus       183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~--G~~~Vi~~~~~~~~~~~a~~~-----Ga~~~i~~~~~~~~~~~~v~~~~~--  253 (368)
T TIGR02818       183 VEEGDTVAVFGLGGIGLSVIQGARMA--KASRIIAIDINPAKFELAKKL-----GATDCVNPNDYDKPIQEVIVEITD--  253 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHh-----CCCeEEcccccchhHHHHHHHHhC--
Confidence            36789999999999999999999864  87 799999999988887653     3211111111  01    111211  


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      +.+|+|+-..  |     ....+....+.+++| |+++.-.
T Consensus       254 ~g~d~vid~~--G-----~~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       254 GGVDYSFECI--G-----NVNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             CCCCEEEECC--C-----CHHHHHHHHHHhhcCCCeEEEEe
Confidence            2689888543  2     123566667889886 8887654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=96.15  E-value=0.0078  Score=56.07  Aligned_cols=103  Identities=10%  Similarity=-0.015  Sum_probs=75.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..-..+++|||| +|.-+..+-.+  .=.+++-+|-|..+++.++..-    +-+-.+.+.++|-..+++..++||+|+.
T Consensus        71 k~fp~a~diGcs-~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~q----dp~i~~~~~v~DEE~Ldf~ens~DLiis  143 (325)
T KOG2940|consen   71 KSFPTAFDIGCS-LGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQ----DPSIETSYFVGDEEFLDFKENSVDLIIS  143 (325)
T ss_pred             hhCcceeecccc-hhhhhHHHHhc--chhheeeeecchHHHHHhhccC----CCceEEEEEecchhcccccccchhhhhh
Confidence            445689999998 56655555432  1246899999999999987532    2345688889999999988889999985


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +--.+|. .+-...+..+...|||+|.++-.
T Consensus       144 SlslHW~-NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  144 SLSLHWT-NDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhhhh-ccCchHHHHHHHhcCCCccchhH
Confidence            5333432 34456788899999999998753

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=96.13  E-value=0.047  Score=56.15  Aligned_cols=102  Identities=22%  Similarity=0.240  Sum_probs=69.2

Q ss_pred             CCCCEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhc------CCC-C--------CCCeEEEEcc
Q 021008          120 RFPTKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSS------DPD-L--------STRMFFHTTD  183 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~------~~g-l--------~~ri~f~~gD  183 (318)
                      .+-++|.+||+|.+|..-. .+|+   .|..|+.+|+++++++.+++.+++      ..| +        -.|+++. .|
T Consensus         3 ~~~~kV~VIGaG~MG~gIA~~la~---aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~   78 (503)
T TIGR02279         3 INVVTVAVIGAGAMGAGIAQVAAS---AGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TD   78 (503)
T ss_pred             CCccEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CC
Confidence            4557899999998775543 3343   489999999999999987543221      012 1        1244443 23


Q ss_pred             ccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          184 IMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       184 a~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..    +..+.|+|+.+..-  +.+-|..++.++.+.++|+.+|....
T Consensus        79 ~~----~l~~aDlVIEav~E--~~~vK~~vf~~l~~~~~~~~IlasnT  120 (503)
T TIGR02279        79 LH----ALADAGLVIEAIVE--NLEVKKALFAQLEELCPADTIIASNT  120 (503)
T ss_pred             HH----HhCCCCEEEEcCcC--cHHHHHHHHHHHHhhCCCCeEEEECC
Confidence            22    33478999976432  56789999999999999988876554

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.10  E-value=0.063  Score=43.12  Aligned_cols=93  Identities=17%  Similarity=0.183  Sum_probs=60.9

Q ss_pred             EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEEEec
Q 021008          125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVVFLA  200 (318)
Q Consensus       125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V~~a  200 (318)
                      |+.+|+|.+|.......++  .+..|+.+|.|++.++.+++     .|    +.++.||+.+..    ....+.|.|++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~--~~~~vvvid~d~~~~~~~~~-----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKE--GGIDVVVIDRDPERVEELRE-----EG----VEVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHH--TTSEEEEEESSHHHHHHHHH-----TT----SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             eEEEcCCHHHHHHHHHHHh--CCCEEEEEECCcHHHHHHHh-----cc----cccccccchhhhHHhhcCccccCEEEEc
Confidence            6789998765554333332  24599999999988777653     22    679999999732    233478877765


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .    +.....-.+...++.+.|...++++..
T Consensus        70 ~----~~d~~n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   70 T----DDDEENLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             S----SSHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred             c----CCHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            4    223444455566688899999888764

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.09  E-value=0.035  Score=52.91  Aligned_cols=93  Identities=16%  Similarity=0.134  Sum_probs=63.8

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      -.+|..||.|-+|.+-....++......|+|+|.+.+..+.|..     .|+.+..    .+... .......|+|+++-
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~-----lgv~d~~----~~~~~-~~~~~~aD~Vivav   72 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE-----LGVIDEL----TVAGL-AEAAAEADLVIVAV   72 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh-----cCccccc----ccchh-hhhcccCCEEEEec
Confidence            36899999999888765555544345667888888887777754     3332221    11110 12334689999987


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                          +...-.++++++.+.|+||..|.
T Consensus        73 ----Pi~~~~~~l~~l~~~l~~g~iv~   95 (279)
T COG0287          73 ----PIEATEEVLKELAPHLKKGAIVT   95 (279)
T ss_pred             ----cHHHHHHHHHHhcccCCCCCEEE
Confidence                55778899999999999987763

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=96.08  E-value=0.024  Score=55.56  Aligned_cols=96  Identities=8%  Similarity=0.030  Sum_probs=61.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH-HHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA-NSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a-i~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++++|+..|+|++|..++.+|+.+  |++|+.+|.+++. .+.++    + .|...-+..  .+...+....+.+|+|+
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~Vi~~~~~~~~~~~~a~----~-lGa~~~i~~--~~~~~v~~~~~~~D~vi  247 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKAF--GLRVTVISRSSEKEREAID----R-LGADSFLVT--TDSQKMKEAVGTMDFII  247 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHc--CCeEEEEeCChHHhHHHHH----h-CCCcEEEcC--cCHHHHHHhhCCCcEEE
Confidence            4689999999999999999999864  8999999988653 33433    3 443111111  11111111113589888


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -..  |     ....+....+.+++||+++.-.
T Consensus       248 d~~--G-----~~~~~~~~~~~l~~~G~iv~vG  273 (375)
T PLN02178        248 DTV--S-----AEHALLPLFSLLKVSGKLVALG  273 (375)
T ss_pred             ECC--C-----cHHHHHHHHHhhcCCCEEEEEc
Confidence            543  2     1235666778999999998754

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=96.02  E-value=0.057  Score=53.36  Aligned_cols=102  Identities=17%  Similarity=0.281  Sum_probs=64.9

Q ss_pred             CCCCEEEEEc-cCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCC--CCCeEEEE----cccc----cc
Q 021008          120 RFPTKIAFIG-SGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDL--STRMFFHT----TDIM----NV  187 (318)
Q Consensus       120 ~~~~rVL~IG-sGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl--~~ri~f~~----gDa~----~l  187 (318)
                      .++.+|+.+| +|++|+.++.+|+...-|+ +|+++|.+++..+.|+++... .+.  +....++.    .|..    ++
T Consensus       174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~-~~~~~Ga~~~~i~~~~~~~~~~~v~~~  252 (410)
T cd08238         174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPP-EAASRGIELLYVNPATIDDLHATLMEL  252 (410)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccc-cccccCceEEEECCCccccHHHHHHHH
Confidence            5678999998 7999999999998642233 799999999999999886332 100  11111221    1111    11


Q ss_pred             CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          188 SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       188 ~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      . .-..||+|+...  |     ....+....+.++++|.+++-
T Consensus       253 t-~g~g~D~vid~~--g-----~~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         253 T-GGQGFDDVFVFV--P-----VPELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             h-CCCCCCEEEEcC--C-----CHHHHHHHHHHhccCCeEEEE
Confidence            1 122699888643  1     124666777899988876554

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=95.98  E-value=0.035  Score=52.73  Aligned_cols=100  Identities=15%  Similarity=0.100  Sum_probs=65.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++++||..|+|++|..++.+|+.+  |++|+.++.+++..+.+++     .|...-+.....+..+....++.+|+++
T Consensus       161 ~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~d~vi  233 (333)
T cd08296         161 AKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK-----LGAHHYIDTSKEDVAEALQELGGAKLIL  233 (333)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH-----cCCcEEecCCCccHHHHHHhcCCCCEEE
Confidence            36788999999999999999999864  8999999999887777654     3321111111111111111224689887


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      -..  +     ....+.+..+.++++|+++.-..
T Consensus       234 ~~~--g-----~~~~~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         234 ATA--P-----NAKAISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             ECC--C-----chHHHHHHHHHcccCCEEEEEec
Confidence            432  1     12367777899999999987653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.97  E-value=0.033  Score=50.02  Aligned_cols=99  Identities=14%  Similarity=0.132  Sum_probs=64.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-c-CcCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-V-SSALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l-~~~l~~fD~V  197 (318)
                      .++++||..|+|++|..++.+|+.  .|.+|++++.+++..+.++++     |...-+.....+... + ....+.+|+|
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~d~v  205 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKA--AGARVIVTDRSDEKLELAKEL-----GADHVIDYKEEDLEEELRLTGGGGADVV  205 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHh-----CCceeccCCcCCHHHHHHHhcCCCCCEE
Confidence            678999999999888888888886  489999999999877776543     211111111001000 0 0122479999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +...-      . ...+..+.+.|+++|+++.-..
T Consensus       206 i~~~~------~-~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         206 IDAVG------G-PETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             EECCC------C-HHHHHHHHHhcccCCEEEEEcc
Confidence            85541      1 1456777889999999987653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.97  E-value=0.025  Score=56.61  Aligned_cols=99  Identities=19%  Similarity=0.201  Sum_probs=61.7

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCCC---------CCeEEEEccccccCcC
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDLS---------TRMFFHTTDIMNVSSA  190 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl~---------~ri~f~~gDa~~l~~~  190 (318)
                      ++|.+||.|-+|.+.- .|++   .|.+|+++|+|++.++.-++-...  ..++.         .+..+.        .+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~---~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~--------~~   72 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFAS---RQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT--------TT   72 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHh---CCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee--------cc
Confidence            6899999998877653 3454   489999999999988863210000  01110         112221        11


Q ss_pred             CCCccEEEeccccCC------ChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          191 LKDYEVVFLAALVGM------DKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       191 l~~fD~V~~aalvgm------~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ....|+||++--.+.      +...=..+++.+.+.+++|.+++..+.
T Consensus        73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST  120 (415)
T PRK11064         73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST  120 (415)
T ss_pred             cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            236799987653221      113445677889999999999988873

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.95  E-value=0.034  Score=50.52  Aligned_cols=105  Identities=13%  Similarity=0.113  Sum_probs=63.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++||.||.|..+...+.....  .|+.|+.|+.+..  +.-+++...     .+++++.++...  .++..+|+|+.
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~--~~l~~l~~~-----~~i~~~~~~~~~--~dl~~~~lVi~   75 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELE--SELTLLAEQ-----GGITWLARCFDA--DILEGAFLVIA   75 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCC--HHHHHHHHc-----CCEEEEeCCCCH--HHhCCcEEEEE
Confidence            467899999999887776544433  4999999876653  222333333     478998887652  35568999986


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc-CCCcccccccC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS-AHGARAFLYPV  242 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~-~~g~r~~lYP~  242 (318)
                      +--   +.+.-.++.    ...+.-|.++-.. .-....|..|.
T Consensus        76 at~---d~~ln~~i~----~~a~~~~ilvn~~d~~e~~~f~~pa  112 (205)
T TIGR01470        76 ATD---DEELNRRVA----HAARARGVPVNVVDDPELCSFIFPS  112 (205)
T ss_pred             CCC---CHHHHHHHH----HHHHHcCCEEEECCCcccCeEEEee
Confidence            641   222333444    4444456665333 22334587774

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PLN02827 Alcohol dehydrogenase-like

Probab=95.94  E-value=0.026  Score=55.24  Aligned_cols=97  Identities=14%  Similarity=0.134  Sum_probs=63.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE--cccc----ccCcCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT--TDIM----NVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~--gDa~----~l~~~l  191 (318)
                      ..++++||..|+|++|..++.+|+.+  |+ .|+++|.+++..+.|++     .|...-+....  .+..    ++..  
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~--G~~~vi~~~~~~~~~~~a~~-----lGa~~~i~~~~~~~~~~~~v~~~~~--  261 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLR--GASQIIGVDINPEKAEKAKT-----FGVTDFINPNDLSEPIQQVIKRMTG--  261 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH-----cCCcEEEcccccchHHHHHHHHHhC--
Confidence            36789999999999999999999864  77 59999999988777754     33311111111  0111    1111  


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      +.+|+|+-..  |     ....+....+.+++| |++++-.
T Consensus       262 ~g~d~vid~~--G-----~~~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        262 GGADYSFECV--G-----DTGIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             CCCCEEEECC--C-----ChHHHHHHHHhhccCCCEEEEEC
Confidence            2699888543  2     122456667889999 9987644

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=95.93  E-value=0.032  Score=59.57  Aligned_cols=101  Identities=19%  Similarity=0.174  Sum_probs=71.7

Q ss_pred             CCEEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-C--------CCCeEEEEcccc
Q 021008          122 PTKIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-L--------STRMFFHTTDIM  185 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l--------~~ri~f~~gDa~  185 (318)
                      -++|..||+|.+|-.-.. +|..  .|..|+-+|+++++++.+++.+.+.      .| +        -.++++..    
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~----  382 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATK--AGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT----  382 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC----
Confidence            379999999997765433 3422  4999999999999999986654321      11 1        13555542    


Q ss_pred             ccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          186 NVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       186 ~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++ ..+.+.|+|+=+..  -+.+-|.++++++-++++|+++|..++
T Consensus       383 ~~-~~~~~aDlViEav~--E~~~~K~~v~~~le~~~~~~~ilasnT  425 (708)
T PRK11154        383 DY-RGFKHADVVIEAVF--EDLALKQQMVAEVEQNCAPHTIFASNT  425 (708)
T ss_pred             Ch-HHhccCCEEeeccc--ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence            22 23457899884432  267899999999999999999998766

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.91  E-value=0.018  Score=54.05  Aligned_cols=98  Identities=16%  Similarity=0.179  Sum_probs=65.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-c-CcCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-V-SSALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l-~~~l~~fD~V  197 (318)
                      .++.+||..|+|+.|..++.+|+..  |++|++++.+++..+.++++     |...-+.....+..+ + ....+.+|+|
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~D~v  236 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKEL-----GADEVLNSLDDSPKDKKAAGLGGGFDVI  236 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh-----CCCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence            6788999999998899999999864  89999999999888777542     331111110001000 0 1122369988


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +-..  +     ....++++.+.|++||.++.-.
T Consensus       237 id~~--g-----~~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         237 FDFV--G-----TQPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             EECC--C-----CHHHHHHHHHHhhcCCEEEEEC
Confidence            7443  1     1346778889999999998764

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.90  E-value=0.074  Score=50.79  Aligned_cols=96  Identities=22%  Similarity=0.284  Sum_probs=60.0

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhh-------cCCCCC---------CCeEEEEccccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVS-------SDPDLS---------TRMFFHTTDIMN  186 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~-------~~~gl~---------~ri~f~~gDa~~  186 (318)
                      ++|.+||+|.+|.+......+  .|.+|+.+|.+++..+.+++...       . .|.-         .++++. .|..+
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~--~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~-~g~~~~~~~~~~~~~i~~~-~~~~~   78 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFAR--AGHEVRLWDADPAAAAAAPAYIAGRLEDLAA-FDLLDGEAPDAVLARIRVT-DSLAD   78 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHH--CCCeeEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCchhhHHHHhcCeEEE-CcHHH
Confidence            489999999887654333222  38899999999998888764221       1 2221         234432 23222


Q ss_pred             cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEE
Q 021008          187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALL  227 (318)
Q Consensus       187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~l  227 (318)
                         .....|+|+.+...  +..-|..++..+.+..+++..+
T Consensus        79 ---a~~~ad~Vi~avpe--~~~~k~~~~~~l~~~~~~~~ii  114 (308)
T PRK06129         79 ---AVADADYVQESAPE--NLELKRALFAELDALAPPHAIL  114 (308)
T ss_pred             ---hhCCCCEEEECCcC--CHHHHHHHHHHHHHhCCCcceE
Confidence               23478999877532  3356888998887766555444

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=95.89  E-value=0.038  Score=59.10  Aligned_cols=102  Identities=13%  Similarity=0.098  Sum_probs=71.7

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-C--------CCCeEEEEcccc
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-L--------STRMFFHTTDIM  185 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l--------~~ri~f~~gDa~  185 (318)
                      +-++|..||+|.+|-.-......  .|..|+-+|+++++++.+++.+.+.      .| +        -.++++..    
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----  385 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSAS--KGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL----  385 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC----
Confidence            33689999999877664333322  4999999999999999886654320      11 1        12444431    


Q ss_pred             ccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          186 NVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       186 ~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++ .++++.|+|+=+..-  +.+-|.++++++-++++|+++|..++
T Consensus       386 ~~-~~~~~aDlViEav~E--~l~~K~~vf~~l~~~~~~~~ilasnT  428 (714)
T TIGR02437       386 SY-AGFDNVDIVVEAVVE--NPKVKAAVLAEVEQHVREDAILASNT  428 (714)
T ss_pred             CH-HHhcCCCEEEEcCcc--cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence            22 234578999855432  67899999999999999999998876

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.86  E-value=0.077  Score=54.18  Aligned_cols=104  Identities=20%  Similarity=0.227  Sum_probs=65.7

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCCC--------CCeEEEEccccccCcCC
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDLS--------TRMFFHTTDIMNVSSAL  191 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl~--------~ri~f~~gDa~~l~~~l  191 (318)
                      ++|..||+|-+|++. .+||+ ...|.+|+|+|+|++.++.-++-...  ..|+.        .+.+|. .|..   ...
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~-~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~---~~i   76 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIAL-KCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVE---KHV   76 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHH---HHH
Confidence            589999999988765 44554 22368899999999998874322110  02221        223332 2221   123


Q ss_pred             CCccEEEeccccCC-----------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 KDYEVVFLAALVGM-----------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm-----------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...|++|+.--.+.           +...-..+.+.+.+++++|.++++++
T Consensus        77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~S  127 (473)
T PLN02353         77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS  127 (473)
T ss_pred             hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence            46788887532111           22345688899999999999999888

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=95.86  E-value=0.039  Score=53.10  Aligned_cols=91  Identities=15%  Similarity=0.070  Sum_probs=66.7

Q ss_pred             hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc
Q 021008          106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM  185 (318)
Q Consensus       106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~  185 (318)
                      |.+.-.+.|.   +.++.-.+|.=-|.+|.|-..|-+ +.+..+++|+|.||.|++.|++....   .++|++|+.+.-.
T Consensus        11 Ll~E~i~~L~---~~~~giyiD~TlG~GGHS~~iL~~-l~~~~~li~~DrD~~Ai~~a~~~l~~---~~~r~~~v~~~F~   83 (314)
T COG0275          11 LLNEVVELLA---PKPDGIYIDGTLGAGGHSRAILEK-LPDLGRLIGIDRDPQAIAIAKERLKE---FDGRVTLVHGNFA   83 (314)
T ss_pred             HHHHHHHhcc---cCCCcEEEEecCCCcHhHHHHHHh-CCCCCeEEEEcCCHHHHHHHHHHhhc---cCCcEEEEeCcHH
Confidence            3344444443   466688888877877899887765 43457799999999999999998876   5699999999876


Q ss_pred             ccCcC-----CCCccEEEecccc
Q 021008          186 NVSSA-----LKDYEVVFLAALV  203 (318)
Q Consensus       186 ~l~~~-----l~~fD~V~~aalv  203 (318)
                      ++...     .+.+|-|+++--|
T Consensus        84 ~l~~~l~~~~i~~vDGiL~DLGV  106 (314)
T COG0275          84 NLAEALKELGIGKVDGILLDLGV  106 (314)
T ss_pred             HHHHHHHhcCCCceeEEEEeccC
Confidence            65332     2378888766544

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=95.84  E-value=0.043  Score=53.17  Aligned_cols=97  Identities=15%  Similarity=0.147  Sum_probs=64.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc--ccc----ccCcCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT--DIM----NVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g--Da~----~l~~~l  191 (318)
                      ..++++||..|+|++|..++.+|+.  .|+ .|+++|.+++..+.+++     .|...-+.....  |..    ++..  
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~-----lGa~~~i~~~~~~~~~~~~v~~~~~--  254 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKK-----FGATDCVNPKDHDKPIQQVLVEMTD--  254 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH-----cCCCEEEcccccchHHHHHHHHHhC--
Confidence            3678999999999999999999986  488 79999999998887764     333111111111  111    1211  


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      +.+|+|+-..  |     ....+....+.+++| |+++.-.
T Consensus       255 ~g~d~vid~~--g-----~~~~~~~a~~~l~~~~G~~v~~g  288 (368)
T cd08300         255 GGVDYTFECI--G-----NVKVMRAALEACHKGWGTSVIIG  288 (368)
T ss_pred             CCCcEEEECC--C-----ChHHHHHHHHhhccCCCeEEEEc
Confidence            2699988543  2     123566667889997 8887654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=95.84  E-value=0.087  Score=56.40  Aligned_cols=100  Identities=13%  Similarity=0.109  Sum_probs=71.0

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-C--------CCCeEEEEcccccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-L--------STRMFFHTTDIMNV  187 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l--------~~ri~f~~gDa~~l  187 (318)
                      ++|..||+|.+|-.-..+...  .|..|+-+|+++++++.+++.+.+.      .| +        -.++++. .   ++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~---~~  387 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSAS--KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-L---DY  387 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-C---CH
Confidence            689999999977664433333  4999999999999999876554320      11 1        1355543 2   22


Q ss_pred             CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          188 SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 ~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       .++++.|+|+=+. . -+.+-|.++|.++-+.++|+.+|..++
T Consensus       388 -~~~~~aDlViEav-~-E~l~~K~~vf~~l~~~~~~~~ilasNT  428 (715)
T PRK11730        388 -AGFERVDVVVEAV-V-ENPKVKAAVLAEVEQKVREDTILASNT  428 (715)
T ss_pred             -HHhcCCCEEEecc-c-CcHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence             2345789988443 2 267899999999999999999988866

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=95.81  E-value=0.028  Score=60.36  Aligned_cols=99  Identities=17%  Similarity=0.190  Sum_probs=71.2

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-CC--------CCeEEEEccccc
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-LS--------TRMFFHTTDIMN  186 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l~--------~ri~f~~gDa~~  186 (318)
                      ++|..||+|.+|-.- .++|.   .|..|+-+|+++++++.+.+.+.+.      .| +.        .++++. .|   
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~---  408 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVD---KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LD---  408 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHh---CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CC---
Confidence            689999999887663 33443   4999999999999999986655420      11 11        355543 22   


Q ss_pred             cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      + ..+++.|+|+=+..  -+.+-|.++++++-++++|+++|..++
T Consensus       409 ~-~~~~~aDlViEAv~--E~l~~K~~vf~~l~~~~~~~~ilasNT  450 (737)
T TIGR02441       409 Y-SGFKNADMVIEAVF--EDLSLKHKVIKEVEAVVPPHCIIASNT  450 (737)
T ss_pred             H-HHhccCCeehhhcc--ccHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence            2 23457898884432  266899999999999999999998866

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=95.78  E-value=0.044  Score=53.09  Aligned_cols=97  Identities=15%  Similarity=0.178  Sum_probs=64.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc------ccccCcCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD------IMNVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD------a~~l~~~l  191 (318)
                      ..++.+||..|+|++|..++.+|+.+  |+ +|+++|.+++..+.++++     |...-+....-+      +.++. . 
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~~~~~-----ga~~~i~~~~~~~~~~~~~~~~~-~-  252 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIA--GASRIIGVDINEDKFEKAKEF-----GATDFINPKDSDKPVSEVIREMT-G-  252 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHc-----CCCcEeccccccchHHHHHHHHh-C-
Confidence            36789999999999999999999864  87 799999999888877653     321111111100      11121 2 


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      ..+|+|+-..  |    . ...+....+.++|| |+++.-.
T Consensus       253 ~g~d~vid~~--g----~-~~~~~~~~~~l~~~~G~~v~~g  286 (365)
T cd08277         253 GGVDYSFECT--G----N-ADLMNEALESTKLGWGVSVVVG  286 (365)
T ss_pred             CCCCEEEECC--C----C-hHHHHHHHHhcccCCCEEEEEc
Confidence            3699888433  2    1 23566677899886 8887755

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=95.73  E-value=0.044  Score=52.99  Aligned_cols=97  Identities=14%  Similarity=0.148  Sum_probs=64.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc--cc----cccCcCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT--DI----MNVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g--Da----~~l~~~l  191 (318)
                      ..++++||..|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++     .|...-+.....  +.    .++..  
T Consensus       185 ~~~g~~VlV~G~g~vG~~a~q~ak~--~G~~~vi~~~~~~~~~~~~~~-----~Ga~~~i~~~~~~~~~~~~v~~~~~--  255 (369)
T cd08301         185 VKKGSTVAIFGLGAVGLAVAEGARI--RGASRIIGVDLNPSKFEQAKK-----FGVTEFVNPKDHDKPVQEVIAEMTG--  255 (369)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH-----cCCceEEcccccchhHHHHHHHHhC--
Confidence            3678999999999999999999986  487 89999999988887755     333111111110  01    11211  


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      +.+|+|+-..  |    . ...+....+.+++| |++++-.
T Consensus       256 ~~~d~vid~~--G----~-~~~~~~~~~~~~~~~g~~v~~g  289 (369)
T cd08301         256 GGVDYSFECT--G----N-IDAMISAFECVHDGWGVTVLLG  289 (369)
T ss_pred             CCCCEEEECC--C----C-hHHHHHHHHHhhcCCCEEEEEC
Confidence            2689887432  2    1 23555567889996 8887755

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.70  E-value=0.053  Score=51.00  Aligned_cols=98  Identities=12%  Similarity=0.073  Sum_probs=54.8

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHH-hhcCCCCCCCeEEEEcc-ccccCcCCCCccEEEec
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSL-VSSDPDLSTRMFFHTTD-IMNVSSALKDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~-~~~~~gl~~ri~f~~gD-a~~l~~~l~~fD~V~~a  200 (318)
                      .||+.||+|++|.+......+  .|..|+.++. ++.++..++. ..- .+...+..+ ... ..+.......+|+||++
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~--~g~~V~~~~r-~~~~~~~~~~g~~~-~~~~~~~~~-~~~~~~~~~~~~~~~d~vila   75 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLE--AGRDVTFLVR-PKRAKALRERGLVI-RSDHGDAVV-PGPVITDPEELTGPFDLVILA   75 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHH--CCCceEEEec-HHHHHHHHhCCeEE-EeCCCeEEe-cceeecCHHHccCCCCEEEEE
Confidence            479999999987754333322  3788999999 6655544321 000 000111111 111 11111112579999987


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      .    +...-..+++.+...+.++..++.
T Consensus        76 v----k~~~~~~~~~~l~~~~~~~~~ii~  100 (305)
T PRK12921         76 V----KAYQLDAAIPDLKPLVGEDTVIIP  100 (305)
T ss_pred             e----cccCHHHHHHHHHhhcCCCCEEEE
Confidence            5    223456688888888888876553

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.70  E-value=0.016  Score=56.97  Aligned_cols=107  Identities=17%  Similarity=0.237  Sum_probs=70.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~f  194 (318)
                      -+|++|||||.||+  |.++.+...+|.- .++-++-||..-+....+.+. .+. .+.....+|+    .+++.. +.|
T Consensus       112 fapqsiLDvG~GPg--tgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~n-v~t-~~td~r~s~vt~dRl~lp~a-d~y  186 (484)
T COG5459         112 FAPQSILDVGAGPG--TGLWALNDIWPDLKSAVILEASPALRKVGDTLAEN-VST-EKTDWRASDVTEDRLSLPAA-DLY  186 (484)
T ss_pred             cCcchhhccCCCCc--hhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhh-ccc-ccCCCCCCccchhccCCCcc-cee
Confidence            57889999999963  6665554445643 466778899888887777665 333 2233334444    345432 268


Q ss_pred             cEEEe-ccccCCC-hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFL-AALVGMD-KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~-aalvgm~-~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |++++ +-|++|- ..+-...+++++..++|||.||+-+
T Consensus       187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE  225 (484)
T COG5459         187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE  225 (484)
T ss_pred             ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence            87774 4566542 1223458999999999999998866

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=95.67  E-value=0.056  Score=52.32  Aligned_cols=97  Identities=9%  Similarity=0.115  Sum_probs=62.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|+..|+|++|..++.+|+.+  |++|+.++.+++....+.   ++ .|.. . .+...+...+......+|+|+-
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~---~~-~Ga~-~-~i~~~~~~~~~~~~~~~D~vid  250 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEAL---EH-LGAD-D-YLVSSDAAEMQEAADSLDYIID  250 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH---Hh-cCCc-E-EecCCChHHHHHhcCCCcEEEE
Confidence            5788999999999999999999864  889999998886554432   22 3432 1 1111111112111236898884


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..  |     ....+....+.+++||+++.-.
T Consensus       251 ~~--g-----~~~~~~~~~~~l~~~G~iv~~G  275 (357)
T PLN02514        251 TV--P-----VFHPLEPYLSLLKLDGKLILMG  275 (357)
T ss_pred             CC--C-----chHHHHHHHHHhccCCEEEEEC
Confidence            43  2     1235666678999999988765

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.67  E-value=0.042  Score=52.77  Aligned_cols=98  Identities=13%  Similarity=0.022  Sum_probs=57.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+++|+.||+|++|.......+.. .+..|+.+|.+++.   ++++..+ .|.    ..+..  .++......+|+|+.
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~-g~~~V~v~~r~~~r---a~~la~~-~g~----~~~~~--~~~~~~l~~aDvVi~  244 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAK-GVAEITIANRTYER---AEELAKE-LGG----NAVPL--DELLELLNEADVVIS  244 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCCHHH---HHHHHHH-cCC----eEEeH--HHHHHHHhcCCEEEE
Confidence            4789999999999887765555432 24689999999853   3334444 332    22221  223233457899997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +.-.  + .. ...++.+.+..+.++.++++-+
T Consensus       245 at~~--~-~~-~~~~~~~~~~~~~~~~~viDla  273 (311)
T cd05213         245 ATGA--P-HY-AKIVERAMKKRSGKPRLIVDLA  273 (311)
T ss_pred             CCCC--C-ch-HHHHHHHHhhCCCCCeEEEEeC
Confidence            7532  1 12 3444444433333567777664

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=95.66  E-value=0.021  Score=58.69  Aligned_cols=101  Identities=20%  Similarity=0.203  Sum_probs=69.4

Q ss_pred             CCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CCC---------CCCeEEEEccc
Q 021008          121 FPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PDL---------STRMFFHTTDI  184 (318)
Q Consensus       121 ~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~gl---------~~ri~f~~gDa  184 (318)
                      +-++|.+||.|.+|..- ..+|+   .|..|+.+|+++++++.+.+.+++.      .|.         -.++++. .|.
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~   81 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQ---AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL   81 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence            45799999999877543 33443   4999999999999999975444320      121         1235543 232


Q ss_pred             cccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          185 MNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       185 ~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .    +..+.|+|+-+..-  +.+-|..++.++.+.++|+.+|+.+.
T Consensus        82 ~----~~~~aDlViEav~E--~~~vK~~vf~~l~~~~~~~ailasnt  122 (507)
T PRK08268         82 A----DLADCDLVVEAIVE--RLDVKQALFAQLEAIVSPDCILATNT  122 (507)
T ss_pred             H----HhCCCCEEEEcCcc--cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence            2    23478999966432  56889999999999889998887544

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=95.66  E-value=0.055  Score=51.21  Aligned_cols=98  Identities=13%  Similarity=0.181  Sum_probs=63.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++.+||..|+|.+|..++.+|+..  |. .|++++.+++..+.++++     |...-+.....+..++......+|+|+
T Consensus       164 ~~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~-----g~~~vi~~~~~~~~~~~~~~~~vd~vl  236 (339)
T cd08232         164 LAGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAM-----GADETVNLARDPLAAYAADKGDFDVVF  236 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHc-----CCCEEEcCCchhhhhhhccCCCccEEE
Confidence            4789999999998899999999863  87 799999998877766553     221111111111112222223599988


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -...       ....++++.+.|+++|+++.-.
T Consensus       237 d~~g-------~~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         237 EASG-------APAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             ECCC-------CHHHHHHHHHHHhcCCEEEEEe
Confidence            5431       1235677889999999988643

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.64  E-value=0.041  Score=44.80  Aligned_cols=84  Identities=15%  Similarity=0.079  Sum_probs=58.8

Q ss_pred             ChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-------ccCcCCCCccEEEeccccCC
Q 021008          133 LPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-------NVSSALKDYEVVFLAALVGM  205 (318)
Q Consensus       133 lp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-------~l~~~l~~fD~V~~aalvgm  205 (318)
                      +|+.++.+|+.+  |++|+++|.+++..+.++++-..        .++..+-.       ++. ....+|+||-..-   
T Consensus         2 vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~~Ga~--------~~~~~~~~~~~~~i~~~~-~~~~~d~vid~~g---   67 (130)
T PF00107_consen    2 VGLMAIQLAKAM--GAKVIATDRSEEKLELAKELGAD--------HVIDYSDDDFVEQIRELT-GGRGVDVVIDCVG---   67 (130)
T ss_dssp             HHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTTES--------EEEETTTSSHHHHHHHHT-TTSSEEEEEESSS---
T ss_pred             hHHHHHHHHHHc--CCEEEEEECCHHHHHHHHhhccc--------cccccccccccccccccc-ccccceEEEEecC---
Confidence            678889999864  79999999999998888775322        11222111       221 1136999996542   


Q ss_pred             ChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          206 DKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       206 ~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                          ....++...+.++|||++++-...+
T Consensus        68 ----~~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   68 ----SGDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             ----SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             ----cHHHHHHHHHHhccCCEEEEEEccC
Confidence                1457888889999999999887554

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=95.62  E-value=0.042  Score=53.73  Aligned_cols=142  Identities=15%  Similarity=0.092  Sum_probs=83.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccccCcCC--CCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMNVSSAL--KDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~l~~~l--~~fD~  196 (318)
                      .++.+|+.+|+|..|++++.-|+.. .-.+|++||++++..++|+++=+.     +-++=... |+.+...++  ..-|.
T Consensus       184 ~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~fGAT-----~~vn~~~~~~vv~~i~~~T~gG~d~  257 (366)
T COG1062         184 EPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKFGAT-----HFVNPKEVDDVVEAIVELTDGGADY  257 (366)
T ss_pred             CCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhcCCc-----eeecchhhhhHHHHHHHhcCCCCCE
Confidence            7889999999999999999999853 345899999999999999886443     11111111 232211111  26788


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCccc-ccccCCCccccCCcEEEEE--EcCchhHHHHHHHHhhc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARA-FLYPVVDPSDLLGFEVLSV--FHPTDEVINSVVLARKY  273 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~-~lYP~v~~~~l~gf~~~~~--~~p~~~VvNsvv~ark~  273 (318)
                      +|-..  |     ..++++.....+.++|..++---.+... .--+.++.-.-+.|.-...  ..|..++-.-|-++++.
T Consensus       258 ~~e~~--G-----~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~gr~~~Gs~~G~~~p~~diP~lv~~y~~G  330 (366)
T COG1062         258 AFECV--G-----NVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAG  330 (366)
T ss_pred             EEEcc--C-----CHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeeccceEEEEeecCCccccchhHHHHHHHcC
Confidence            86433  2     1236666667777799887766322222 2222222111133433222  35666665555566665


Q ss_pred             c
Q 021008          274 V  274 (318)
Q Consensus       274 ~  274 (318)
                      +
T Consensus       331 k  331 (366)
T COG1062         331 K  331 (366)
T ss_pred             C
Confidence            4

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=95.61  E-value=0.057  Score=51.04  Aligned_cols=98  Identities=7%  Similarity=-0.007  Sum_probs=64.1

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccccC--cCCCCc
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMNVS--SALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~l~--~~l~~f  194 (318)
                      ..++.+||..| +|++|..++.+|+.  .|++|++++.+++..+.+++     .|...-+..... +..+..  ...+.+
T Consensus       136 ~~~g~~VLI~ga~g~vG~~aiqlAk~--~G~~Vi~~~~s~~~~~~~~~-----lGa~~vi~~~~~~~~~~~~~~~~~~gv  208 (325)
T TIGR02825       136 VKGGETVMVNAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKVAYLKK-----LGFDVAFNYKTVKSLEETLKKASPDGY  208 (325)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH-----cCCCEEEeccccccHHHHHHHhCCCCe
Confidence            36789999999 68899999999986  49999999999987777654     333111111111 111100  011369


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+-..  |    .  ..+....+.+++||+++.-.
T Consensus       209 dvv~d~~--G----~--~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       209 DCYFDNV--G----G--EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             EEEEECC--C----H--HHHHHHHHHhCcCcEEEEec
Confidence            9888432  2    1  23567789999999998754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=95.60  E-value=0.096  Score=52.49  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=80.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-cCCC-CccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-SALK-DYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-~~l~-~fD~  196 (318)
                      +.++.||||.=+-|+|-|+. +|.-+--...|.+-|.+...+..-+.++.+ .|. .+.-....|..+.| .... +||-
T Consensus       239 Pq~gERIlDmcAAPGGKTt~-IAalMkn~G~I~AnD~n~~r~~~l~~n~~r-lGv-~ntiv~n~D~~ef~~~~~~~~fDR  315 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTH-IAALMKNTGVIFANDSNENRLKSLKANLHR-LGV-TNTIVSNYDGREFPEKEFPGSFDR  315 (460)
T ss_pred             CCCCCeecchhcCCCchHHH-HHHHHcCCceEEecccchHHHHHHHHHHHH-hCC-CceEEEccCcccccccccCcccce
Confidence            47889999999999999974 565443356899999999999999999998 887 44555677877654 2222 7999


Q ss_pred             EEecccc-C--C---C------h---------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALV-G--M---D------K---------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalv-g--m---~------~---------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |.++|-+ |  +   +      +         .--.++|.+....++|||+||+-.
T Consensus       316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            9988744 2  1   0      0         011356667778999999998855

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.60  E-value=0.081  Score=54.15  Aligned_cols=98  Identities=19%  Similarity=0.179  Sum_probs=60.3

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHh-------hcC--CCC--CCCeEEEEccccccCcC
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLV-------SSD--PDL--STRMFFHTTDIMNVSSA  190 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~-------~~~--~gl--~~ri~f~~gDa~~l~~~  190 (318)
                      ++|.+||+|.+|..-. .+++   .|..|+.+|++++..+...+..       ...  ..+  ..++++. .|   +...
T Consensus         5 ~kIavIG~G~MG~~iA~~la~---~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~-~~---~~ea   77 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLL---AGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFC-AS---LAEA   77 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEee-CC---HHHH
Confidence            5899999998776532 2333   4889999999999987643321       110  000  1134432 22   2223


Q ss_pred             CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ....|+|+.+.--  +.+-|..+++++...++|+.+|..
T Consensus        78 ~~~aD~Vieavpe--~~~vk~~l~~~l~~~~~~~~iI~S  114 (495)
T PRK07531         78 VAGADWIQESVPE--RLDLKRRVLAEIDAAARPDALIGS  114 (495)
T ss_pred             hcCCCEEEEcCcC--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence            3578999966421  335588899999888888765433

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=95.59  E-value=0.13  Score=51.83  Aligned_cols=104  Identities=16%  Similarity=0.195  Sum_probs=63.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCCC-----CCeEEEEccccccCcCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDLS-----TRMFFHTTDIMNVSSALK  192 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl~-----~ri~f~~gDa~~l~~~l~  192 (318)
                      .++.+|.+||.|-+|++.-....   .+.+|+|+|+|++.++.-++-..-  ..++.     .+..+. .+..    ...
T Consensus         4 ~~~mkI~vIGlGyvGlpmA~~la---~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t-~~~~----~~~   75 (425)
T PRK15182          4 IDEVKIAIIGLGYVGLPLAVEFG---KSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFT-SEIE----KIK   75 (425)
T ss_pred             CCCCeEEEECcCcchHHHHHHHh---cCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEE-eCHH----HHc
Confidence            56789999999998877533222   368999999999998886521110  00100     122222 2211    124


Q ss_pred             CccEEEeccccCC------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGM------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..|++|+.---+.      +...=....+.+.+.+++|.+++.++
T Consensus        76 ~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S  120 (425)
T PRK15182         76 ECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES  120 (425)
T ss_pred             CCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec
Confidence            6898887642221      11233334568889999999999988

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.57  E-value=0.023  Score=52.86  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=46.4

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHH---HhhcCCCC----CCCeEEEEccccccCc-CCCCc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALS---LVSSDPDL----STRMFFHTTDIMNVSS-ALKDY  194 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~---~~~~~~gl----~~ri~f~~gDa~~l~~-~l~~f  194 (318)
                      .+|||.=+| +|-.|+.+|.   .|++|++++.||-...+-+.   ........    ..||+++.+|..+... ...+|
T Consensus        77 ~~VLDaTaG-LG~Da~vlA~---~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~  152 (234)
T PF04445_consen   77 PSVLDATAG-LGRDAFVLAS---LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSF  152 (234)
T ss_dssp             --EEETT-T-TSHHHHHHHH---HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--
T ss_pred             CEEEECCCc-chHHHHHHHc---cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCC
Confidence            499999999 9999999986   39999999999976555432   22221222    2599999999998543 23489


Q ss_pred             cEEEecccc
Q 021008          195 EVVFLAALV  203 (318)
Q Consensus       195 D~V~~aalv  203 (318)
                      |+||++=+.
T Consensus       153 DVVY~DPMF  161 (234)
T PF04445_consen  153 DVVYFDPMF  161 (234)
T ss_dssp             SEEEE--S-
T ss_pred             CEEEECCCC
Confidence            999988655

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.56  E-value=0.01  Score=52.59  Aligned_cols=129  Identities=16%  Similarity=0.212  Sum_probs=85.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC--CCCCCCeEEEEccccc--cCcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD--PDLSTRMFFHTTDIMN--VSSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~--~gl~~ri~f~~gDa~~--l~~~l~~fD  195 (318)
                      -.+++|+++|.|-.+++.+++|.. .|...|.--|-+++++.--++....-  .++ .++....-+...  ....-..||
T Consensus        28 ~rg~~ilelgggft~laglmia~~-a~~~~v~ltdgne~svrnv~ki~~~n~~s~~-tsc~vlrw~~~~aqsq~eq~tFD  105 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIACK-APDSSVWLTDGNEESVRNVEKIRNSNMASSL-TSCCVLRWLIWGAQSQQEQHTFD  105 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheeee-cCCceEEEecCCHHHHHHHHHHHhccccccc-ceehhhHHHHhhhHHHHhhCccc
Confidence            456899999999999999999974 58899999999999998887776541  122 222221111110  111223899


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC---CCcccccccCCCccccCCcEEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA---HGARAFLYPVVDPSDLLGFEVLS  255 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~---~g~r~~lYP~v~~~~l~gf~~~~  255 (318)
                      +|..+--+-. .+..+.+.+-|.++|+|.|.-++-++   +.+..|+    +.....||.+..
T Consensus       106 iIlaADClFf-dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~----de~~~~gf~v~l  163 (201)
T KOG3201|consen  106 IILAADCLFF-DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFL----DEVGTVGFTVCL  163 (201)
T ss_pred             EEEeccchhH-HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHH----HHHHhceeEEEe
Confidence            9886543322 37788899999999999998666554   3333455    211223887744

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.55  E-value=0.095  Score=49.11  Aligned_cols=97  Identities=14%  Similarity=0.075  Sum_probs=56.5

Q ss_pred             CEEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      .||+.||+|.+|..... |++   .|..|+.+|.+++..+..++.-.. .. .........-..+. .+...+|+|+++-
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~g~~-~~-~~~~~~~~~~~~~~-~~~~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQ---AGHDVTLVARRGAHLDALNENGLR-LE-DGEITVPVLAADDP-AELGPQDLVILAV   74 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHh---CCCeEEEEECChHHHHHHHHcCCc-cc-CCceeecccCCCCh-hHcCCCCEEEEec
Confidence            37999999998765433 333   478999999988766554432111 00 11111100001111 1225799999774


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                          ...+-..+++.+...+.++..++.
T Consensus        75 ----k~~~~~~~~~~l~~~l~~~~~iv~   98 (304)
T PRK06522         75 ----KAYQLPAALPSLAPLLGPDTPVLF   98 (304)
T ss_pred             ----ccccHHHHHHHHhhhcCCCCEEEE
Confidence                223456788888888888876654

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=95.55  E-value=0.03  Score=55.60  Aligned_cols=78  Identities=26%  Similarity=0.250  Sum_probs=59.5

Q ss_pred             eCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--CCccE-EEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          154 DIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--KDYEV-VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       154 Did~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--~~fD~-V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +..|..+..-.=-.-+ .++ ++++++++++.+.....  ++||. |+.+++-.|+.+.-.+.+++|.+.++|||+|++|
T Consensus       256 ~~~P~YL~~e~f~~lr-~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R  333 (380)
T PF11899_consen  256 DCCPPYLRPENFEALR-ARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR  333 (380)
T ss_pred             CCCChhhcHhHHHHHh-cCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence            5666655543211112 566 99999999999865533  58995 5567777889999999999999999999999999


Q ss_pred             cCC
Q 021008          231 SAH  233 (318)
Q Consensus       231 ~~~  233 (318)
                      ++.
T Consensus       334 sa~  336 (380)
T PF11899_consen  334 SAA  336 (380)
T ss_pred             eCC
Confidence            963

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=95.54  E-value=0.049  Score=52.07  Aligned_cols=98  Identities=16%  Similarity=0.232  Sum_probs=65.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~  193 (318)
                      ..++++||..|+|++|..++.+|+..  |+ .|+++|.+++..+.+++     .|...-+.....+.    .++. .-..
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~-----~g~~~~v~~~~~~~~~~i~~~~-~~~~  235 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKE-----YGATDIVDYKNGDVVEQILKLT-GGKG  235 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH-----cCCceEecCCCCCHHHHHHHHh-CCCC
Confidence            36789999999999999999999864  77 59999999988877764     33321112111111    1111 1126


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+++-..  +    . ...+.+..+.|+++|+++.-.
T Consensus       236 ~d~vld~~--g----~-~~~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         236 VDAVIIAG--G----G-QDTFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             CcEEEECC--C----C-HHHHHHHHHHhhcCCEEEEec
Confidence            99888543  1    1 246778889999999988644

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=95.53  E-value=0.035  Score=54.86  Aligned_cols=104  Identities=13%  Similarity=0.135  Sum_probs=66.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE-ccc----cccCcCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHT-TDI----MNVSSALK  192 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~-gDa----~~l~~~l~  192 (318)
                      ..++++||..|+|++|..++.+|+.+  |++ |+.+|.+++..+.|+++     |. +.+.... .+.    .++. ...
T Consensus       183 ~~~g~~VlV~G~G~iG~~aiqlAk~~--Ga~~vi~~d~~~~r~~~a~~~-----Ga-~~v~~~~~~~~~~~v~~~~-~~~  253 (393)
T TIGR02819       183 VGPGSTVYIAGAGPVGLAAAASAQLL--GAAVVIVGDLNPARLAQARSF-----GC-ETVDLSKDATLPEQIEQIL-GEP  253 (393)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHHHHHc-----CC-eEEecCCcccHHHHHHHHc-CCC
Confidence            36789999999999999999999864  776 56678988888887653     33 1111111 111    1111 113


Q ss_pred             CccEEEeccccCC-------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGM-------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm-------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+|+-..-..-       .+.+....+++..+.+++||++++-.
T Consensus       254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G  299 (393)
T TIGR02819       254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG  299 (393)
T ss_pred             CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence            6898885432100       01223457888889999999998754

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.52  E-value=0.16  Score=49.05  Aligned_cols=107  Identities=14%  Similarity=0.228  Sum_probs=67.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH-HHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA-NSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a-i~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      +.+.||..||+|..|.+..++.....--.++.-+|++++. -..+..+... ..+..++.+..+|-.    ++...|+|+
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~-~~~~~~~~i~~~~~~----~~~~adivI   78 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHA-VPFTSPTKIYAGDYS----DCKDADLVV   78 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhh-ccccCCeEEEeCCHH----HhCCCCEEE
Confidence            5778999999999888876655432112379999998764 3555555544 333245666554433    345899988


Q ss_pred             ecccc----CCChhH----HHHHHHHHHHhcc---CCeEEEEEc
Q 021008          199 LAALV----GMDKDE----KIRVIDHLAKYMA---PGALLMLRS  231 (318)
Q Consensus       199 ~aalv----gm~~~~----k~~vl~~l~r~Lk---pGg~lv~r~  231 (318)
                      +.+-+    ||+..+    -..++.++...++   |.|.+++-+
T Consensus        79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            87755    443322    3455666555554   678776654

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=95.52  E-value=0.13  Score=51.17  Aligned_cols=102  Identities=24%  Similarity=0.343  Sum_probs=60.8

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCCC-----CCeEEEE-ccccccCcCCCCc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDLS-----TRMFFHT-TDIMNVSSALKDY  194 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl~-----~ri~f~~-gDa~~l~~~l~~f  194 (318)
                      ++|..||.|-+|+....+..   .|..|+++|+|++.++..++-...  ..++.     .+.++.. .|..+   .....
T Consensus         1 mkI~VIGlGyvGl~~A~~lA---~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~---~~~~a   74 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE---AYRDA   74 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH---hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh---hhcCC
Confidence            37999999988866544332   278999999999999888762211  01111     1222321 11111   12367


Q ss_pred             cEEEeccccCCC-------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMD-------KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~-------~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+++---..+       ...-..+++.+.+ ++||.+++..+
T Consensus        75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~S  117 (388)
T PRK15057         75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKS  117 (388)
T ss_pred             CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEee
Confidence            888876422111       1233456788877 79998888877

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=95.51  E-value=0.053  Score=52.40  Aligned_cols=99  Identities=8%  Similarity=0.009  Sum_probs=64.8

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccc-cCc-CCCCc
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMN-VSS-ALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~-l~~-~l~~f  194 (318)
                      ..++++||..|+ |++|..++.+|+.  .|++|++++.+++..+.+++   . .|...-+..... |..+ +.. ..+.+
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~--~G~~Vi~~~~~~~k~~~~~~---~-lGa~~vi~~~~~~~~~~~i~~~~~~gv  229 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKL--HGCYVVGSAGSSQKVDLLKN---K-LGFDEAFNYKEEPDLDAALKRYFPEGI  229 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH---h-cCCCEEEECCCcccHHHHHHHHCCCCc
Confidence            367899999998 9999999999986  49999999999887666542   2 333211221111 2111 100 11368


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+-..  |    .  ..+....+.|++||++++-.
T Consensus       230 D~v~d~v--G----~--~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        230 DIYFDNV--G----G--DMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             EEEEECC--C----H--HHHHHHHHHhccCCEEEEEC
Confidence            9888432  2    1  35677789999999998654

>PRK08507 prephenate dehydrogenase; Validated

Probab=95.49  E-value=0.082  Score=49.55  Aligned_cols=87  Identities=22%  Similarity=0.255  Sum_probs=55.0

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecccc
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALV  203 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalv  203 (318)
                      +|.+||+|.+|.+-.....+.....+|+++|++++..+.+++     .|..+.    ..+..++    ...|+|+++-  
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~-----~g~~~~----~~~~~~~----~~aD~Vilav--   66 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE-----LGLVDE----IVSFEEL----KKCDVIFLAI--   66 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH-----CCCCcc----cCCHHHH----hcCCEEEEeC--
Confidence            799999998877643322221112479999999988776642     333211    1122222    2489999876  


Q ss_pred             CCChhHHHHHHHHHHHhccCCeEEE
Q 021008          204 GMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       204 gm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                        +...-.+++.++.. ++||..++
T Consensus        67 --p~~~~~~~~~~l~~-l~~~~iv~   88 (275)
T PRK08507         67 --PVDAIIEILPKLLD-IKENTTII   88 (275)
T ss_pred             --cHHHHHHHHHHHhc-cCCCCEEE
Confidence              44566778888888 88887554

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=95.43  E-value=0.1  Score=47.83  Aligned_cols=95  Identities=17%  Similarity=0.149  Sum_probs=64.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ..++.+||..|+|++|..++.+|+.+  |++ |++++.+++..+.++++     |..+.+.....   .. .....+|+|
T Consensus        95 ~~~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~-----g~~~~~~~~~~---~~-~~~~~~d~v  163 (277)
T cd08255          95 PRLGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEAL-----GPADPVAADTA---DE-IGGRGADVV  163 (277)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHc-----CCCccccccch---hh-hcCCCCCEE
Confidence            36789999999999999999999874  777 99999999887777654     21111111100   11 122369988


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +-....       ...+....+.|+++|+++.-.
T Consensus       164 l~~~~~-------~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         164 IEASGS-------PSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             EEccCC-------hHHHHHHHHHhcCCcEEEEEe
Confidence            854321       235677788999999987644

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.42  E-value=0.065  Score=56.55  Aligned_cols=111  Identities=20%  Similarity=0.155  Sum_probs=72.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhC------CC-----CcEEEEEeCCh---HHH-----------HHHHHHhhc----C
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINH------LT-----TTCFDNYDIDP---SAN-----------SKALSLVSS----D  170 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~------~~-----ga~V~gvDid~---~ai-----------~~Ar~~~~~----~  170 (318)
                      ...-+|+|+|=| +|+-.+...+..      .+     .-+++++|.+|   +.+           +.++++...    .
T Consensus        56 ~~~~~i~e~gfG-~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  134 (662)
T PRK01747         56 RRRFVIAETGFG-TGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLL  134 (662)
T ss_pred             CCcEEEEecCcc-hHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccC
Confidence            344699999999 688766655432      12     24799999765   222           223333321    0


Q ss_pred             CCC------CC--CeEEEEccccccCcCCC-CccEEEeccccCC-ChhHH-HHHHHHHHHhccCCeEEEEEc
Q 021008          171 PDL------ST--RMFFHTTDIMNVSSALK-DYEVVFLAALVGM-DKDEK-IRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       171 ~gl------~~--ri~f~~gDa~~l~~~l~-~fD~V~~aalvgm-~~~~k-~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .|+      +.  +.+++.||+.+....+. .||++|++++-+- +++.+ .++|.+|++.++|||+++.-+
T Consensus       135 ~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t  206 (662)
T PRK01747        135 PGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT  206 (662)
T ss_pred             CCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence            222      12  44577899987555553 6999999998642 22222 579999999999999998765

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.38  E-value=0.095  Score=48.44  Aligned_cols=104  Identities=11%  Similarity=0.029  Sum_probs=63.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEE--eCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNY--DIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gv--Did~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ..+++||.||.|..+..-+.....  .|+.||-|  +++++..+++.    .     .+++++..+...  .++..+++|
T Consensus        23 ~~~~~VLVVGGG~VA~RK~~~Ll~--~gA~VtVVap~i~~el~~l~~----~-----~~i~~~~r~~~~--~dl~g~~LV   89 (223)
T PRK05562         23 SNKIKVLIIGGGKAAFIKGKTFLK--KGCYVYILSKKFSKEFLDLKK----Y-----GNLKLIKGNYDK--EFIKDKHLI   89 (223)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCCCHHHHHHHh----C-----CCEEEEeCCCCh--HHhCCCcEE
Confidence            678899999999877665544333  47777776  77777655432    2     568888765432  345678999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeE-EEEEcCCCcccccccCC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGAL-LMLRSAHGARAFLYPVV  243 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~-lv~r~~~g~r~~lYP~v  243 (318)
                      |.+.    +.   .++=+.+++..+.-+. +.+.+......|..|.+
T Consensus        90 iaAT----dD---~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAi  129 (223)
T PRK05562         90 VIAT----DD---EKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQ  129 (223)
T ss_pred             EECC----CC---HHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeE
Confidence            9775    21   2233444555554344 43333334456888853

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.38  E-value=0.055  Score=42.10  Aligned_cols=87  Identities=16%  Similarity=0.194  Sum_probs=54.4

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCC---cEEE-EEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTT---TCFD-NYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~g---a~V~-gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ||.+||+|.+|.+...-..+  .|   .+|. +.+.+++..+..   ..+ .+    +.+...+..++.   ...|+|++
T Consensus         1 kI~iIG~G~mg~al~~~l~~--~g~~~~~v~~~~~r~~~~~~~~---~~~-~~----~~~~~~~~~~~~---~~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLA--SGIKPHEVIIVSSRSPEKAAEL---AKE-YG----VQATADDNEEAA---QEADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHH--TTS-GGEEEEEEESSHHHHHHH---HHH-CT----TEEESEEHHHHH---HHTSEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCceeEEeeccCcHHHHHHH---HHh-hc----cccccCChHHhh---ccCCEEEE
Confidence            68999999776654322112  35   7888 459999665554   343 22    344433433332   26899998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      +-    +...-.+++.++ +...+|..++
T Consensus        68 av----~p~~~~~v~~~i-~~~~~~~~vi   91 (96)
T PF03807_consen   68 AV----KPQQLPEVLSEI-PHLLKGKLVI   91 (96)
T ss_dssp             -S-----GGGHHHHHHHH-HHHHTTSEEE
T ss_pred             EE----CHHHHHHHHHHH-hhccCCCEEE
Confidence            86    556778899888 7788877765

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=95.38  E-value=0.068  Score=57.04  Aligned_cols=100  Identities=17%  Similarity=0.193  Sum_probs=70.8

Q ss_pred             CEEEEEccCCChHHHHHH-HHhCCCCcEEEEEeCChHHHHHHHHHhhcC-------CCC--------CCCeEEEEccccc
Q 021008          123 TKIAFIGSGPLPLTSIVL-AINHLTTTCFDNYDIDPSANSKALSLVSSD-------PDL--------STRMFFHTTDIMN  186 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~L-A~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-------~gl--------~~ri~f~~gDa~~  186 (318)
                      ++|..||+|.+|-.-..+ |.+  .|..|+-+|+|+++++.+.+.+.+.       ..+        -.++++. .   +
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~---~  378 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATK--AGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-T---D  378 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-C---C
Confidence            689999999987664433 322  4899999999999999886554320       111        1355553 2   2


Q ss_pred             cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      + ..+++.|+|+=+..  -+.+-|.++++++-++++|+.+|..++
T Consensus       379 ~-~~~~~adlViEav~--E~l~~K~~v~~~l~~~~~~~~ilasnT  420 (699)
T TIGR02440       379 Y-RGFKDVDIVIEAVF--EDLALKHQMVKDIEQECAAHTIFASNT  420 (699)
T ss_pred             h-HHhccCCEEEEecc--ccHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence            2 24468899984432  267899999999999999999888766

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=95.38  E-value=0.026  Score=57.25  Aligned_cols=108  Identities=17%  Similarity=0.137  Sum_probs=78.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-------cCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-------SALK  192 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-------~~l~  192 (318)
                      ..+.++|.||-|.+++.+....  ++|.+++|+|++||++.+.|++.+.-  --.+|.+.+..|+.+-.       .+..
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~--~~p~~~i~~ve~dP~~l~va~q~f~f--~q~~r~~V~i~dGl~~~~~~~k~~~~~~  369 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHM--SLPKFQITAVEIDPEMLEVATQYFGF--MQSDRNKVHIADGLDFLQRTAKSQQEDI  369 (482)
T ss_pred             cccCcEEEEecCCCccccceee--ecCccceeEEEEChhHhhccHhhhch--hhhhhhhhhHhhchHHHHHHhhcccccc
Confidence            4557899999988788875443  46899999999999999999999764  12347888888887521       1334


Q ss_pred             CccEEEecc----ccCCChh----HHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAA----LVGMDKD----EKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aa----lvgm~~~----~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .||+++++-    -.||...    --..++..+...+.|.|.++++-
T Consensus       370 ~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl  416 (482)
T KOG2352|consen  370 CPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL  416 (482)
T ss_pred             CCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence            799998642    2355321    12457888889999999997755

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=95.37  E-value=0.067  Score=50.96  Aligned_cols=89  Identities=19%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      ++|.+||+|.+|.+.. .|++   .|.+|+++|++++..+..++.     |...     ..+..++...+...|+|++.-
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~---~g~~V~~~dr~~~~~~~l~~~-----g~~~-----~~s~~~~~~~~~~~dvIi~~v   67 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAK---RGHDCVGYDHDQDAVKAMKED-----RTTG-----VANLRELSQRLSAPRVVWVMV   67 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHc-----CCcc-----cCCHHHHHhhcCCCCEEEEEc
Confidence            3799999998876532 2333   488999999999876665431     2110     123333322334679998764


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                          +...-..+++++...+++|.+++
T Consensus        68 ----p~~~~~~v~~~l~~~l~~g~ivi   90 (298)
T TIGR00872        68 ----PHGIVDAVLEELAPTLEKGDIVI   90 (298)
T ss_pred             ----CchHHHHHHHHHHhhCCCCCEEE
Confidence                22345678889999999986554

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.35  E-value=0.081  Score=50.78  Aligned_cols=98  Identities=12%  Similarity=0.103  Sum_probs=54.6

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC-CCCeEEEEcc--c-cccCcCCCCccEEE
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL-STRMFFHTTD--I-MNVSSALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl-~~ri~f~~gD--a-~~l~~~l~~fD~V~  198 (318)
                      +||.+||+|.+|.+-.....+  .|..|+.+|.++.. +..++.-....+. +.+.......  . .+. .....+|+|+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~--~G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi   78 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAA--AGADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVL   78 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHh--cCCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEE
Confidence            489999999887654333332  37899999997643 2222210000000 1111110000  0 111 2334799999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      ++-    +.....++++.+...++++..++
T Consensus        79 l~v----k~~~~~~~~~~l~~~~~~~~iii  104 (341)
T PRK08229         79 VTV----KSAATADAAAALAGHARPGAVVV  104 (341)
T ss_pred             EEe----cCcchHHHHHHHHhhCCCCCEEE
Confidence            764    23456778899999898887654

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.31  E-value=0.11  Score=49.20  Aligned_cols=98  Identities=19%  Similarity=0.279  Sum_probs=59.5

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC---C--CCCCeEEEEccccccCcCCCCccEE
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP---D--LSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~---g--l~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      .+|.+||+|.+|........+  .|..|+.+|.+++.++..++.-....   +  +..++.+ ..|..+   .....|+|
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~D~v   75 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLAR--NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAE---ALADADLI   75 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHH---HHhCCCEE
Confidence            379999999877664332222  47899999999987766544311100   0  0012222 122222   22368999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +++-    +......+++.+...++||..++.-
T Consensus        76 i~~v----~~~~~~~v~~~l~~~~~~~~~vi~~  104 (325)
T PRK00094         76 LVAV----PSQALREVLKQLKPLLPPDAPIVWA  104 (325)
T ss_pred             EEeC----CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence            9775    3356778888888888888766543

>PLN02256 arogenate dehydrogenase

Probab=95.28  E-value=0.11  Score=50.03  Aligned_cols=100  Identities=16%  Similarity=0.094  Sum_probs=60.1

Q ss_pred             HHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc
Q 021008          103 YIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT  182 (318)
Q Consensus       103 y~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g  182 (318)
                      |+.-.+.|..      .....+|..||+|-+|.+-....++  .|.+|+++|.++. .+.++    . .|.    .+ ..
T Consensus        23 ~~~~~~~~~~------~~~~~kI~IIG~G~mG~slA~~L~~--~G~~V~~~d~~~~-~~~a~----~-~gv----~~-~~   83 (304)
T PLN02256         23 YESRLQEELE------KSRKLKIGIVGFGNFGQFLAKTFVK--QGHTVLATSRSDY-SDIAA----E-LGV----SF-FR   83 (304)
T ss_pred             hHhHHhHhhc------cCCCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEECccH-HHHHH----H-cCC----ee-eC
Confidence            4555555533      2567899999999877654333332  3678999999973 23332    2 333    22 22


Q ss_pred             cccccCcCCCCccEEEeccccCCChhHHHHHHHHH-HHhccCCeEE
Q 021008          183 DIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHL-AKYMAPGALL  227 (318)
Q Consensus       183 Da~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l-~r~LkpGg~l  227 (318)
                      |..++.  ....|+|+++.    +...-..++.++ ...++||.+|
T Consensus        84 ~~~e~~--~~~aDvVilav----p~~~~~~vl~~l~~~~l~~~~iv  123 (304)
T PLN02256         84 DPDDFC--EEHPDVVLLCT----SILSTEAVLRSLPLQRLKRSTLF  123 (304)
T ss_pred             CHHHHh--hCCCCEEEEec----CHHHHHHHHHhhhhhccCCCCEE
Confidence            333321  12589999876    334556778887 5668887644

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=95.21  E-value=0.095  Score=44.24  Aligned_cols=95  Identities=22%  Similarity=0.332  Sum_probs=48.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEe-CChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYD-IDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvD-id~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .+..||-+||+|-.|.+.-..-++  .|..|.+|- .+++..+++..++..       ..+  .+..+   .....|++|
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~--ag~~v~~v~srs~~sa~~a~~~~~~-------~~~--~~~~~---~~~~aDlv~   73 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALAR--AGHEVVGVYSRSPASAERAAAFIGA-------GAI--LDLEE---ILRDADLVF   73 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHH--TTSEEEEESSCHH-HHHHHHC--TT--------------TTG---GGCC-SEEE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHH--CCCeEEEEEeCCccccccccccccc-------ccc--ccccc---ccccCCEEE
Confidence            345799999999988875444333  488999874 555454554443322       121  12222   234799999


Q ss_pred             eccccCCChhHHHHHHHHHHHh--ccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKY--MAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~--LkpGg~lv~r~~  232 (318)
                      ++-    +...=..+.+++...  .+||-.++=-++
T Consensus        74 iav----pDdaI~~va~~La~~~~~~~g~iVvHtSG  105 (127)
T PF10727_consen   74 IAV----PDDAIAEVAEQLAQYGAWRPGQIVVHTSG  105 (127)
T ss_dssp             E-S-----CCHHHHHHHHHHCC--S-TT-EEEES-S
T ss_pred             EEe----chHHHHHHHHHHHHhccCCCCcEEEECCC
Confidence            875    223445566666665  667755544443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK08324 short chain dehydrogenase; Validated

Probab=95.21  E-value=0.29  Score=51.95  Aligned_cols=105  Identities=14%  Similarity=0.194  Sum_probs=66.2

Q ss_pred             CCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----------c
Q 021008          121 FPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----------S  189 (318)
Q Consensus       121 ~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----------~  189 (318)
                      .+++||..|+ |.+|........+  .|++|+.+|++++..+.+.+....    ..++.++.+|+.+..          .
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~--~Ga~Vvl~~r~~~~~~~~~~~l~~----~~~v~~v~~Dvtd~~~v~~~~~~~~~  494 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAA--EGACVVLADLDEEAAEAAAAELGG----PDRALGVACDVTDEAAVQAAFEEAAL  494 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHH--CcCEEEEEeCCHHHHHHHHHHHhc----cCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            5689999995 5566554333332  489999999999876665444333    157889999987632          1


Q ss_pred             CCCCccEEEeccccCC-------ChhH-----------HHHHHHHHHHhccC---CeEEEEEc
Q 021008          190 ALKDYEVVFLAALVGM-------DKDE-----------KIRVIDHLAKYMAP---GALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalvgm-------~~~~-----------k~~vl~~l~r~Lkp---Gg~lv~r~  231 (318)
                      ..+..|+|+..+-+..       +.+.           ...+++.+.+.|++   ||.+++-+
T Consensus       495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs  557 (681)
T PRK08324        495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA  557 (681)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            1346898886553311       1111           24456677777777   67777655

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.17  E-value=0.071  Score=51.85  Aligned_cols=93  Identities=19%  Similarity=0.317  Sum_probs=61.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|..||+|.+|.+....++.  .|.+|+++|.++.....   .          +++ ..   ++...+...|+|++
T Consensus       144 l~g~~VgIIG~G~IG~~vA~~L~~--~G~~V~~~d~~~~~~~~---~----------~~~-~~---~l~ell~~aDiVil  204 (330)
T PRK12480        144 VKNMTVAIIGTGRIGAATAKIYAG--FGATITAYDAYPNKDLD---F----------LTY-KD---SVKEAIKDADIISL  204 (330)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCChhHhhh---h----------hhc-cC---CHHHHHhcCCEEEE
Confidence            467899999999988775555544  49999999999753210   0          111 11   22223347899887


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      +.-  .+.+.+.-+-+++...||||++| +..++|
T Consensus       205 ~lP--~t~~t~~li~~~~l~~mk~gavl-IN~aRG  236 (330)
T PRK12480        205 HVP--ANKESYHLFDKAMFDHVKKGAIL-VNAARG  236 (330)
T ss_pred             eCC--CcHHHHHHHhHHHHhcCCCCcEE-EEcCCc
Confidence            652  24445666778889999998755 555555

>PLN02712 arogenate dehydrogenase

Probab=95.15  E-value=0.58  Score=49.87  Aligned_cols=90  Identities=16%  Similarity=0.170  Sum_probs=55.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+.+|.+||.|.+|.+.....++  .|.+|+++|.++.. +.++    + .|.    .+ ..|..++..  ...|+|++
T Consensus       367 ~~~~kIgIIGlG~mG~slA~~L~~--~G~~V~~~dr~~~~-~~a~----~-~Gv----~~-~~~~~el~~--~~aDvVIL  431 (667)
T PLN02712        367 GSKLKIAIVGFGNFGQFLAKTMVK--QGHTVLAYSRSDYS-DEAQ----K-LGV----SY-FSDADDLCE--EHPEVILL  431 (667)
T ss_pred             CCCCEEEEEecCHHHHHHHHHHHH--CcCEEEEEECChHH-HHHH----H-cCC----eE-eCCHHHHHh--cCCCEEEE
Confidence            466899999999877654332222  37899999999643 2222    3 332    22 233333221  24799998


Q ss_pred             ccccCCChhHHHHHHHHHHH-hccCCeEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAK-YMAPGALLM  228 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r-~LkpGg~lv  228 (318)
                      +-    +...-..+++++.. .++||.+|+
T Consensus       432 av----P~~~~~~vi~~l~~~~lk~g~ivv  457 (667)
T PLN02712        432 CT----SILSTEKVLKSLPFQRLKRSTLFV  457 (667)
T ss_pred             CC----ChHHHHHHHHHHHHhcCCCCcEEE
Confidence            86    33455677777765 578876543

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.13  E-value=0.15  Score=48.78  Aligned_cols=97  Identities=18%  Similarity=0.146  Sum_probs=57.3

Q ss_pred             CEEEEEccCCChH-HHHHHHHhCCCCcEEEEEeCChHHHHHHHHH--hhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          123 TKIAFIGSGPLPL-TSIVLAINHLTTTCFDNYDIDPSANSKALSL--VSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       123 ~rVL~IGsGplp~-tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~--~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      +||+.||+|++|. -+..|++   .|..|+-++.+++.++.-++.  +.- .+.+....+.. ... .+.....||+|++
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~---~G~~V~lv~r~~~~~~~i~~~~Gl~i-~~~g~~~~~~~-~~~-~~~~~~~~D~viv   76 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLAR---AGLPVRLILRDRQRLAAYQQAGGLTL-VEQGQASLYAI-PAE-TADAAEPIHRLLL   76 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHh---CCCCeEEEEechHHHHHHhhcCCeEE-eeCCcceeecc-CCC-CcccccccCEEEE
Confidence            5899999999655 4455554   488999999987555443321  111 01112222211 111 1123358999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +.    -.-+-..+++.+...+.|++.++.
T Consensus        77 ~v----K~~~~~~al~~l~~~l~~~t~vv~  102 (305)
T PRK05708         77 AC----KAYDAEPAVASLAHRLAPGAELLL  102 (305)
T ss_pred             EC----CHHhHHHHHHHHHhhCCCCCEEEE
Confidence            74    223445788889999999886644

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=95.13  E-value=0.075  Score=49.81  Aligned_cols=98  Identities=9%  Similarity=0.009  Sum_probs=64.2

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCc-CCCCcc
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSS-ALKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~-~l~~fD  195 (318)
                      ..++.+||..| +|++|..++.+|+.  .|++|++++.+++..+.+++     .|...-+.....|..+ +.. ....+|
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~--~G~~vi~~~~s~~~~~~l~~-----~Ga~~vi~~~~~~~~~~v~~~~~~gvd  213 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKI--KGCKVIGCAGSDDKVAWLKE-----LGFDAVFNYKTVSLEEALKEAAPDGID  213 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH-----cCCCEEEeCCCccHHHHHHHHCCCCcE
Confidence            36789999999 68899999999986  49999999999987777665     2331111111111111 100 113689


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+- . +|    .  ..+....+.++++|+++.-.
T Consensus       214 ~vld-~-~g----~--~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         214 CYFD-N-VG----G--EFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             EEEE-C-CC----H--HHHHHHHHhhccCCEEEEEc
Confidence            8883 3 22    1  35677789999999997643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.09  E-value=0.17  Score=53.35  Aligned_cols=97  Identities=16%  Similarity=0.134  Sum_probs=69.5

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEE
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVV  197 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V  197 (318)
                      ..+|+-+|+|..|......-++  .|..++.+|.|++.++.+++     .    ....+.||+.+..    ...++.|.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~-----~----g~~v~~GDat~~~~L~~agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRK-----F----GMKVFYGDATRMDLLESAGAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh-----c----CCeEEEEeCCCHHHHHhcCCCcCCEE
Confidence            4799999999988765443332  37899999999999888764     1    2467899999742    234478877


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ++..    +..+....+-..+|.+.|...+++|..+
T Consensus       469 vv~~----~d~~~n~~i~~~ar~~~p~~~iiaRa~d  500 (621)
T PRK03562        469 INAI----DDPQTSLQLVELVKEHFPHLQIIARARD  500 (621)
T ss_pred             EEEe----CCHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            7554    3344455555667888999999988743

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=95.02  E-value=0.18  Score=47.48  Aligned_cols=97  Identities=13%  Similarity=0.056  Sum_probs=63.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+||.+|+|.+|..++.+|+.  .|..|++++.+++..+.++++     |...-+.....+...  ...+.+|+|+
T Consensus       160 ~~~~~~vlI~g~g~iG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~--~~~~~~d~vi  230 (330)
T cd08245         160 PRPGERVAVLGIGGLGHLAVQYARA--MGFETVAITRSPDKRELARKL-----GADEVVDSGAELDEQ--AAAGGADVIL  230 (330)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHh-----CCcEEeccCCcchHH--hccCCCCEEE
Confidence            3678899999999999999999986  489999999999887776442     211111111001000  0113699888


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -...       ....+.++.+.|+++|.++.-.
T Consensus       231 ~~~~-------~~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         231 VTVV-------SGAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             ECCC-------cHHHHHHHHHhcccCCEEEEEC
Confidence            4321       1235677789999999988764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=95.02  E-value=0.071  Score=50.97  Aligned_cols=99  Identities=13%  Similarity=0.084  Sum_probs=66.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc----ccCcCCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM----NVSSALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~----~l~~~l~~  193 (318)
                      ..++.+||..|+|++|..++.+|+..  |+ +|+.++.+++..+.++++     |...-+.....+..    ++. ....
T Consensus       170 ~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~~-----ga~~~i~~~~~~~~~~l~~~~-~~~~  241 (351)
T cd08233         170 FKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEEL-----GATIVLDPTEVDVVAEVRKLT-GGGG  241 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-----CCCEEECCCccCHHHHHHHHh-CCCC
Confidence            36789999999999999999999864  88 899999999888877653     22111111111211    111 1125


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +|+|+-..-      . ...+++..+.|++||+++.-..
T Consensus       242 ~d~vid~~g------~-~~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         242 VDVSFDCAG------V-QATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCEEEECCC------C-HHHHHHHHHhccCCCEEEEEcc
Confidence            999985431      1 2356777899999999887653

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.00  E-value=0.24  Score=49.29  Aligned_cols=101  Identities=28%  Similarity=0.296  Sum_probs=61.7

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHh---hcCCCC---------CCCeEEEEccccccCc
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLV---SSDPDL---------STRMFFHTTDIMNVSS  189 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~---~~~~gl---------~~ri~f~~gDa~~l~~  189 (318)
                      ++|.+||+|.+|.+.. .|++   .|.+|+++|++++.++.-++-.   .. .|+         ..++++. .|..+   
T Consensus         1 mkI~vIGlG~~G~~lA~~La~---~G~~V~~~d~~~~~v~~l~~g~~~~~e-~~l~~~~~~~~~~g~l~~~-~~~~~---   72 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLAD---LGHEVTGVDIDQEKVDKLNKGKSPIYE-PGLDELLAKALAAGRLRAT-TDYED---   72 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHh---cCCeEEEEECCHHHHHHhhcCCCCCCC-CCHHHHHHHhhhcCCeEEE-CCHHH---
Confidence            3799999999877653 3443   4889999999998876543210   00 111         1234432 22222   


Q ss_pred             CCCCccEEEeccccCC------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          190 ALKDYEVVFLAALVGM------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalvgm------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .....|+||++--.+.      +...-..+++.+.+.+++|.+++..+
T Consensus        73 ~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S  120 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES  120 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            1347899987653211      11234667788888999998888766

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=94.92  E-value=0.25  Score=47.42  Aligned_cols=97  Identities=15%  Similarity=0.143  Sum_probs=64.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc-------ccccCcCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD-------IMNVSSAL  191 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD-------a~~l~~~l  191 (318)
                      .++.+||..|+|++|..++.+|+.  .|+ +|++++.+++..+.+++     .|...-+.....+       +.++. ..
T Consensus       176 ~~g~~vlI~g~g~vG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~-----~g~~~vi~~~~~~~~~~~~~i~~~~-~~  247 (361)
T cd08231         176 GAGDTVVVQGAGPLGLYAVAAAKL--AGARRVIVIDGSPERLELARE-----FGADATIDIDELPDPQRRAIVRDIT-GG  247 (361)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH-----cCCCeEEcCcccccHHHHHHHHHHh-CC
Confidence            378899999999999999999986  488 99999999877666643     3331111111111       11111 22


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+|+|+-..  | .    ...+....+.|+++|+++.-.
T Consensus       248 ~~~d~vid~~--g-~----~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         248 RGADVVIEAS--G-H----PAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             CCCcEEEECC--C-C----hHHHHHHHHHhccCCEEEEEc
Confidence            3699888543  1 0    235666779999999998655

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=94.90  E-value=0.098  Score=50.65  Aligned_cols=98  Identities=18%  Similarity=0.150  Sum_probs=65.4

Q ss_pred             CCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC---CCcc
Q 021008          120 RFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL---KDYE  195 (318)
Q Consensus       120 ~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l---~~fD  195 (318)
                      .++++||..| +|..|..++.||+.+  |++++.+--+++-.+.++++     |-..-+.+...|..+-..++   ..+|
T Consensus       141 ~~g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~~k~~~~~~l-----GAd~vi~y~~~~~~~~v~~~t~g~gvD  213 (326)
T COG0604         141 KPGETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSSEKLELLKEL-----GADHVINYREEDFVEQVRELTGGKGVD  213 (326)
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHhc-----CCCEEEcCCcccHHHHHHHHcCCCCce
Confidence            6689999999 888999999999974  76766666776555555543     33344555555544321111   2699


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +|+-.  +|      ...+....+.|++||+++.-..
T Consensus       214 vv~D~--vG------~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         214 VVLDT--VG------GDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             EEEEC--CC------HHHHHHHHHHhccCCEEEEEec
Confidence            99943  32      2345556788999999887654

>PRK08655 prephenate dehydrogenase; Provisional

Probab=94.88  E-value=0.12  Score=52.12  Aligned_cols=89  Identities=22%  Similarity=0.248  Sum_probs=56.5

Q ss_pred             CEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      ++|+.|| +|.+|.+.....+.  .|..|+++|.+++...   +.... .|.    .+ ..|..+   .....|+|+++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~--~G~~V~v~~r~~~~~~---~~a~~-~gv----~~-~~~~~e---~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKE--KGFEVIVTGRDPKKGK---EVAKE-LGV----EY-ANDNID---AAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHH--CCCEEEEEECChHHHH---HHHHH-cCC----ee-ccCHHH---HhccCCEEEEec
Confidence            3799998 78777665444433  4789999999986642   22233 232    21 122222   234689999876


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                          +...-..+++++...++||..++-
T Consensus        67 ----p~~~~~~vl~~l~~~l~~~~iViD   90 (437)
T PRK08655         67 ----PINVTEDVIKEVAPHVKEGSLLMD   90 (437)
T ss_pred             ----CHHHHHHHHHHHHhhCCCCCEEEE
Confidence                334556788999999999886543

>PRK10083 putative oxidoreductase; Provisional

Probab=94.86  E-value=0.1  Score=49.35  Aligned_cols=100  Identities=12%  Similarity=0.030  Sum_probs=63.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCcCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSSALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~~l~~fD~  196 (318)
                      ..++++|+..|+|++|..++.+|+.. .|+ .|+++|.+++..+.++++     |...-+.....+..+ +...-.++|+
T Consensus       158 ~~~g~~vlI~g~g~vG~~~~~~a~~~-~G~~~v~~~~~~~~~~~~~~~~-----Ga~~~i~~~~~~~~~~~~~~g~~~d~  231 (339)
T PRK10083        158 PTEQDVALIYGAGPVGLTIVQVLKGV-YNVKAVIVADRIDERLALAKES-----GADWVINNAQEPLGEALEEKGIKPTL  231 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHh-----CCcEEecCccccHHHHHhcCCCCCCE
Confidence            36788999999999999999999842 277 488899999888887654     221111111111111 1111013556


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+-..  |    . ...+.+..+.|++||+++.-.
T Consensus       232 vid~~--g----~-~~~~~~~~~~l~~~G~~v~~g  259 (339)
T PRK10083        232 IIDAA--C----H-PSILEEAVTLASPAARIVLMG  259 (339)
T ss_pred             EEECC--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence            66433  1    1 235677789999999998765

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.83  E-value=0.3  Score=48.56  Aligned_cols=98  Identities=11%  Similarity=0.126  Sum_probs=63.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD  195 (318)
                      ...++|+.+|+|.+|.+......+  .|..|+.+|.|++.++..++..       ..+.++.||+.+..    .....+|
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~--~~~~v~vid~~~~~~~~~~~~~-------~~~~~i~gd~~~~~~L~~~~~~~a~  299 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEK--EGYSVKLIERDPERAEELAEEL-------PNTLVLHGDGTDQELLEEEGIDEAD  299 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHC-------CCCeEEECCCCCHHHHHhcCCccCC
Confidence            346899999999877764443332  3889999999999887765432       34678899998631    2344788


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .|++..    +.....-+...+++.+.+. .++++.
T Consensus       300 ~vi~~~----~~~~~n~~~~~~~~~~~~~-~ii~~~  330 (453)
T PRK09496        300 AFIALT----NDDEANILSSLLAKRLGAK-KVIALV  330 (453)
T ss_pred             EEEECC----CCcHHHHHHHHHHHHhCCC-eEEEEE
Confidence            887543    1123333444556667665 455544

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.80  E-value=0.24  Score=46.40  Aligned_cols=92  Identities=18%  Similarity=0.114  Sum_probs=64.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+||..|+|.+|..++.+|+.  .|++|++++.+++..+.++++     |....+.+     .+. .....+|+++
T Consensus       153 ~~~g~~vlV~g~g~vg~~~~q~a~~--~G~~vi~~~~~~~~~~~~~~~-----g~~~~~~~-----~~~-~~~~~~d~vi  219 (319)
T cd08242         153 ITPGDKVAVLGDGKLGLLIAQVLAL--TGPDVVLVGRHSEKLALARRL-----GVETVLPD-----EAE-SEGGGFDVVV  219 (319)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHc-----CCcEEeCc-----ccc-ccCCCCCEEE
Confidence            3678999999999999999999986  499999999999888777652     33211111     111 1224699888


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      -..  |    . ...+....+.++++|.++..
T Consensus       220 d~~--g----~-~~~~~~~~~~l~~~g~~v~~  244 (319)
T cd08242         220 EAT--G----S-PSGLELALRLVRPRGTVVLK  244 (319)
T ss_pred             ECC--C----C-hHHHHHHHHHhhcCCEEEEE
Confidence            543  1    1 23566677899999999873

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.80  E-value=0.12  Score=41.51  Aligned_cols=97  Identities=12%  Similarity=0.173  Sum_probs=53.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+++||.||.|+.+...+....  ..|++|+-+..+.   ....          +++++..-..   ..++..+|+|+.
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll--~~gA~v~vis~~~---~~~~----------~~i~~~~~~~---~~~l~~~~lV~~   66 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLL--EAGAKVTVISPEI---EFSE----------GLIQLIRREF---EEDLDGADLVFA   66 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHC--CCTBEEEEEESSE---HHHH----------TSCEEEESS----GGGCTTESEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEECCch---hhhh----------hHHHHHhhhH---HHHHhhheEEEe
Confidence            47899999999977666655443  3589999998887   1111          3455554333   234568999996


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc-cccccc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA-RAFLYP  241 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~-r~~lYP  241 (318)
                      +.-   +.+    +-+.+++..+.-|.++-...++. ..|..|
T Consensus        67 at~---d~~----~n~~i~~~a~~~~i~vn~~D~p~~~dF~~P  102 (103)
T PF13241_consen   67 ATD---DPE----LNEAIYADARARGILVNVVDDPELCDFIFP  102 (103)
T ss_dssp             -SS----HH----HHHHHHHHHHHTTSEEEETT-CCCCSEE--
T ss_pred             cCC---CHH----HHHHHHHHHhhCCEEEEECCCcCCCeEEcC
Confidence            651   222    33444455554455554443332 235544

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=94.79  E-value=0.15  Score=48.20  Aligned_cols=100  Identities=13%  Similarity=0.055  Sum_probs=65.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE-cc-ccccCcCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT-TD-IMNVSSALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~-gD-a~~l~~~l~~fD~  196 (318)
                      ..++.+||..|+|++|..++.+|+.. .|++|++++-+++..+.+++     .|...-+.... .+ ...+....+.+|.
T Consensus       160 ~~~g~~vlV~g~g~vG~~~~~la~~~-~g~~v~~~~~~~~~~~~~~~-----~g~~~v~~~~~~~~~~~~v~~~~~~~d~  233 (338)
T PRK09422        160 IKPGQWIAIYGAGGLGNLALQYAKNV-FNAKVIAVDINDDKLALAKE-----VGADLTINSKRVEDVAKIIQEKTGGAHA  233 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCChHHHHHHHH-----cCCcEEecccccccHHHHHHHhcCCCcE
Confidence            36789999999999999999999852 48999999999988777754     33311111100 01 0111111125887


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++++..   .    ...+....+.++++|.++.-.
T Consensus       234 vi~~~~---~----~~~~~~~~~~l~~~G~~v~~g  261 (338)
T PRK09422        234 AVVTAV---A----KAAFNQAVDAVRAGGRVVAVG  261 (338)
T ss_pred             EEEeCC---C----HHHHHHHHHhccCCCEEEEEe
Confidence            776652   1    245788889999999988654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.78  E-value=0.23  Score=52.04  Aligned_cols=97  Identities=13%  Similarity=0.109  Sum_probs=68.2

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEE
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVV  197 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V  197 (318)
                      ..+|+.+|.|..|......-++  .|..++.+|.|++.++.+++     .|    ...+.||+.+..    ...++.|.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~-----~g----~~v~~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRK-----YG----YKVYYGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh-----CC----CeEEEeeCCCHHHHHhcCCccCCEE
Confidence            4689999999988765443333  48899999999999888764     22    467899998732    233478877


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ++.-    +..+....+-...|.+.|...++.|..+
T Consensus       469 v~~~----~d~~~n~~i~~~~r~~~p~~~IiaRa~~  500 (601)
T PRK03659        469 VITC----NEPEDTMKIVELCQQHFPHLHILARARG  500 (601)
T ss_pred             EEEe----CCHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            6543    2234444455566789999999998743

>cd08293 PTGR2 Prostaglandin reductase

Probab=94.68  E-value=0.11  Score=49.25  Aligned_cols=94  Identities=11%  Similarity=0.086  Sum_probs=60.9

Q ss_pred             CCEEEEEcc-CCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc----ccCcCCCCcc
Q 021008          122 PTKIAFIGS-GPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM----NVSSALKDYE  195 (318)
Q Consensus       122 ~~rVL~IGs-Gplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~----~l~~~l~~fD  195 (318)
                      +++||..|. |++|..++.+|+.  .|+ +|++++.+++..+.+++.    .|...-+.....+..    ++. . ..+|
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~--~G~~~Vi~~~~s~~~~~~~~~~----lGa~~vi~~~~~~~~~~i~~~~-~-~gvd  226 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRL--LGCSRVVGICGSDEKCQLLKSE----LGFDAAINYKTDNVAERLRELC-P-EGVD  226 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHh----cCCcEEEECCCCCHHHHHHHHC-C-CCce
Confidence            389999997 8899999999986  488 799999998777666542    333221111111111    121 1 3699


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+-..  +    ..  .+....+.|++||+++.-.
T Consensus       227 ~vid~~--g----~~--~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         227 VYFDNV--G----GE--ISDTVISQMNENSHIILCG  254 (345)
T ss_pred             EEEECC--C----cH--HHHHHHHHhccCCEEEEEe
Confidence            888432  2    11  2466788999999998643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.66  E-value=0.25  Score=51.16  Aligned_cols=123  Identities=9%  Similarity=0.003  Sum_probs=77.1

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEEE
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V~  198 (318)
                      .+|+.+|+|+.|.......++  .|..|+.||.|++.++.+++         .....+.||+.+-.    ...++.|.|+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~--~g~~vvvId~d~~~~~~~~~---------~g~~~i~GD~~~~~~L~~a~i~~a~~vi  486 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLA--AGIPLVVIETSRTRVDELRE---------RGIRAVLGNAANEEIMQLAHLDCARWLL  486 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH---------CCCeEEEcCCCCHHHHHhcCccccCEEE
Confidence            799999999987765443332  37899999999998887763         23678999999731    2344788777


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccccCCCccccCCcEEEEEEcCchhHHHHHH
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVINSVV  268 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~v~~~~l~gf~~~~~~~p~~~VvNsvv  268 (318)
                      ++--   + .+....+-...+...|...++.|-.+....        +.++....-.++.|...+.+.+.
T Consensus       487 v~~~---~-~~~~~~iv~~~~~~~~~~~iiar~~~~~~~--------~~l~~~Gad~vv~p~~~~a~~i~  544 (558)
T PRK10669        487 LTIP---N-GYEAGEIVASAREKRPDIEIIARAHYDDEV--------AYITERGANQVVMGEREIARTML  544 (558)
T ss_pred             EEcC---C-hHHHHHHHHHHHHHCCCCeEEEEECCHHHH--------HHHHHcCCCEEEChHHHHHHHHH
Confidence            5531   2 222222333456678999998886432111        11121223456788777765544

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.64  E-value=0.11  Score=52.99  Aligned_cols=88  Identities=11%  Similarity=0.033  Sum_probs=60.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|+.||.|.+|......++.  .|++|+.+|+|+.....|..     .|.    ++  .+..+   .+...|+|++
T Consensus       252 LaGKtVgVIG~G~IGr~vA~rL~a--~Ga~ViV~e~dp~~a~~A~~-----~G~----~~--~~lee---ll~~ADIVI~  315 (476)
T PTZ00075        252 IAGKTVVVCGYGDVGKGCAQALRG--FGARVVVTEIDPICALQAAM-----EGY----QV--VTLED---VVETADIFVT  315 (476)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchhHHHHHh-----cCc----ee--ccHHH---HHhcCCEEEE
Confidence            588999999999999888777775  49999999999865433321     121    22  12222   2347999997


Q ss_pred             ccccCCChhHHHHHH-HHHHHhccCCeEEEEE
Q 021008          200 AALVGMDKDEKIRVI-DHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalvgm~~~~k~~vl-~~l~r~LkpGg~lv~r  230 (318)
                      +..      . ..++ .+..+.||||++|+--
T Consensus       316 atG------t-~~iI~~e~~~~MKpGAiLINv  340 (476)
T PTZ00075        316 ATG------N-KDIITLEHMRRMKNNAIVGNI  340 (476)
T ss_pred             CCC------c-ccccCHHHHhccCCCcEEEEc
Confidence            641      1 2344 3667899999988653

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.63  E-value=0.1  Score=45.12  Aligned_cols=90  Identities=22%  Similarity=0.244  Sum_probs=54.2

Q ss_pred             CEEEEEccCCChHHHHHHHHhCC-CCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHL-TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~-~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      ++|.+||.|.+|...   |+++. .|..|+++|++++..+...   ..  |    ++ .+.+..++.   ...|+|++.-
T Consensus         2 ~~Ig~IGlG~mG~~~---a~~L~~~g~~v~~~d~~~~~~~~~~---~~--g----~~-~~~s~~e~~---~~~dvvi~~v   65 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAM---ARNLAKAGYEVTVYDRSPEKAEALA---EA--G----AE-VADSPAEAA---EQADVVILCV   65 (163)
T ss_dssp             BEEEEE--SHHHHHH---HHHHHHTTTEEEEEESSHHHHHHHH---HT--T----EE-EESSHHHHH---HHBSEEEE-S
T ss_pred             CEEEEEchHHHHHHH---HHHHHhcCCeEEeeccchhhhhhhH---Hh--h----hh-hhhhhhhHh---hcccceEeec
Confidence            489999999766542   32211 4899999999996655543   32  2    22 233333432   2569998653


Q ss_pred             ccCCChhHHHHHHHH--HHHhccCCeEEEEEc
Q 021008          202 LVGMDKDEKIRVIDH--LAKYMAPGALLMLRS  231 (318)
Q Consensus       202 lvgm~~~~k~~vl~~--l~r~LkpGg~lv~r~  231 (318)
                      .   +...-..++..  +...|++|.+++--+
T Consensus        66 ~---~~~~v~~v~~~~~i~~~l~~g~iiid~s   94 (163)
T PF03446_consen   66 P---DDDAVEAVLFGENILAGLRPGKIIIDMS   94 (163)
T ss_dssp             S---SHHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred             c---cchhhhhhhhhhHHhhccccceEEEecC
Confidence            2   33555678888  889999988887655

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.58  E-value=0.19  Score=47.19  Aligned_cols=91  Identities=9%  Similarity=0.089  Sum_probs=63.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+||..|+|++|..++.+|+.  .|.+|++++.+++..+.+++     .|..   .++..+  +.  ..+.+|+++.
T Consensus       166 ~~~~~vlV~g~g~vg~~~~~la~~--~g~~v~~~~~~~~~~~~~~~-----~g~~---~~~~~~--~~--~~~~vD~vi~  231 (329)
T cd08298         166 KPGQRLGLYGFGASAHLALQIARY--QGAEVFAFTRSGEHQELARE-----LGAD---WAGDSD--DL--PPEPLDAAII  231 (329)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHH--CCCeEEEEcCChHHHHHHHH-----hCCc---EEeccC--cc--CCCcccEEEE
Confidence            678899999999999999999986  48999999999876666543     3321   111111  11  1236898875


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+.       ....++++.+.|++||+++...
T Consensus       232 ~~~-------~~~~~~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         232 FAP-------VGALVPAALRAVKKGGRVVLAG  256 (329)
T ss_pred             cCC-------cHHHHHHHHHHhhcCCEEEEEc
Confidence            431       1246788899999999998754

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.57  E-value=0.15  Score=49.90  Aligned_cols=91  Identities=18%  Similarity=0.228  Sum_probs=55.1

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      ++|.+||+|.+|.+.....++  .|..|..+|.|+...+.++..  . .|..+.   ...   ++.......|+|+++. 
T Consensus         1 ~~I~iIG~GliG~siA~~L~~--~G~~v~i~~~~~~~~~~~~a~--~-~~~~~~---~~~---~~~~~~~~aDlVilav-   68 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKA--AGPDVFIIGYDPSAAQLARAL--G-FGVIDE---LAA---DLQRAAAEADLIVLAV-   68 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHh--cCCCeEEEEeCCCHHHHHHHh--c-CCCCcc---ccc---CHHHHhcCCCEEEEeC-
Confidence            479999999988775544443  355666677776655544321  1 222221   111   2212234789999887 


Q ss_pred             cCCChhHHHHHHHHHHH-hccCCeEEE
Q 021008          203 VGMDKDEKIRVIDHLAK-YMAPGALLM  228 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r-~LkpGg~lv  228 (318)
                         +......+++++.+ .++||.++.
T Consensus        69 ---P~~~~~~vl~~l~~~~l~~~~ivt   92 (359)
T PRK06545         69 ---PVDATAALLAELADLELKPGVIVT   92 (359)
T ss_pred             ---CHHHHHHHHHHHhhcCCCCCcEEE
Confidence               44567888999987 488885443

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=94.57  E-value=0.54  Score=45.41  Aligned_cols=105  Identities=18%  Similarity=0.283  Sum_probs=61.3

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH-HHHHHHHHhhcCCCCCCCeEEEE-ccccccCcCCCCccEEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS-ANSKALSLVSSDPDLSTRMFFHT-TDIMNVSSALKDYEVVF  198 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~-ai~~Ar~~~~~~~gl~~ri~f~~-gDa~~l~~~l~~fD~V~  198 (318)
                      +..||..||+|..|.+..+.+........+.-+|++++ +...+..+... ..+.....+.. +|..+    +.+.|+|+
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~-~~~~~~~~v~~~~dy~~----~~~adivv   76 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHG-SAFLKNPKIEADKDYSV----TANSKVVI   76 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHh-hccCCCCEEEECCCHHH----hCCCCEEE
Confidence            44699999999999887665543333567999999875 33445555443 22222224443 55433    45789998


Q ss_pred             ecccc----CCCh----hHHHH----HHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV----GMDK----DEKIR----VIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv----gm~~----~~k~~----vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.+-.    ||+.    ..-.+    +...+.+. .|.|.+++-+
T Consensus        77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs  120 (312)
T cd05293          77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS  120 (312)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence            86544    4433    12223    33444444 5677766644

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.55  E-value=0.37  Score=47.89  Aligned_cols=95  Identities=16%  Similarity=0.115  Sum_probs=63.9

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEEE
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V~  198 (318)
                      ++|+.+|+|.+|.........  .|..|+.+|.|++.++..++   .     ..+.++.||+.+..    .....+|.|+
T Consensus         1 m~viIiG~G~ig~~~a~~L~~--~g~~v~vid~~~~~~~~~~~---~-----~~~~~~~gd~~~~~~l~~~~~~~a~~vi   70 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSG--ENNDVTVIDTDEERLRRLQD---R-----LDVRTVVGNGSSPDVLREAGAEDADLLI   70 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCcEEEEECCHHHHHHHHh---h-----cCEEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence            479999999877775544332  48899999999987766543   2     23678889987521    1245789887


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +..    +.......+...++.+.|.-.++++.
T Consensus        71 ~~~----~~~~~n~~~~~~~r~~~~~~~ii~~~   99 (453)
T PRK09496         71 AVT----DSDETNMVACQIAKSLFGAPTTIARV   99 (453)
T ss_pred             Eec----CChHHHHHHHHHHHHhcCCCeEEEEE
Confidence            654    22344455666677776777777764

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.52  E-value=0.054  Score=56.03  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=30.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDID  156 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid  156 (318)
                      ..+++|+.||+||.|+++...+++  .|.+|+.+|..
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~  169 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAG  169 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecC
Confidence            567899999999999999888876  48899999954

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.51  E-value=0.18  Score=48.19  Aligned_cols=101  Identities=11%  Similarity=0.058  Sum_probs=54.9

Q ss_pred             CCCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ....+|+.||+|.+|.+- ..|++   .|..|+-+..++.  +.-++.-........+..+....+.+-+.....||+|+
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~---~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi   77 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLAR---AGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVL   77 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHH---CCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEE
Confidence            345799999999876653 33443   4788999988863  21111100000011112221111122222345799999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ++-=.    .+-..+++.+...++|++.++.
T Consensus        78 lavK~----~~~~~~~~~l~~~~~~~~~iv~  104 (313)
T PRK06249         78 VGLKT----TANALLAPLIPQVAAPDAKVLL  104 (313)
T ss_pred             EEecC----CChHhHHHHHhhhcCCCCEEEE
Confidence            87411    2234677788888999887654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.50  E-value=0.11  Score=49.58  Aligned_cols=91  Identities=7%  Similarity=0.013  Sum_probs=56.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|+.||.|.+|.+....++.+  |++|+.++.+++..+.+.    . .|.    ..+  +..++...+.++|+|+.
T Consensus       149 l~gk~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~----~-~g~----~~~--~~~~l~~~l~~aDiVin  215 (287)
T TIGR02853       149 IHGSNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARIT----E-MGL----IPF--PLNKLEEKVAEIDIVIN  215 (287)
T ss_pred             CCCCEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----H-CCC----eee--cHHHHHHHhccCCEEEE
Confidence            4679999999999888877766653  899999999987654442    2 222    111  11233333458999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..-.++       +-++..+.|+||+.+ ++-
T Consensus       216 t~P~~i-------i~~~~l~~~k~~ali-IDl  239 (287)
T TIGR02853       216 TIPALV-------LTADVLSKLPKHAVI-IDL  239 (287)
T ss_pred             CCChHH-------hCHHHHhcCCCCeEE-EEe
Confidence            652111       112345678886544 443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PHA01634 hypothetical protein

Probab=94.47  E-value=0.25  Score=42.29  Aligned_cols=73  Identities=7%  Similarity=0.189  Sum_probs=51.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+++|++||.+ .|-|+|+++-   .|| .|++++.++...+..++..+. ...=++..-.    .+.+...+.||+..
T Consensus        27 vk~KtV~dIGA~-iGdSaiYF~l---~GAK~Vva~E~~~kl~k~~een~k~-nnI~DK~v~~----~eW~~~Y~~~Di~~   97 (156)
T PHA01634         27 VYQRTIQIVGAD-CGSSALYFLL---RGASFVVQYEKEEKLRKKWEEVCAY-FNICDKAVMK----GEWNGEYEDVDIFV   97 (156)
T ss_pred             ecCCEEEEecCC-ccchhhHHhh---cCccEEEEeccCHHHHHHHHHHhhh-heeeeceeec----ccccccCCCcceEE
Confidence            689999999998 8999999985   466 699999999999999887664 2111111100    13444555788766


Q ss_pred             ecc
Q 021008          199 LAA  201 (318)
Q Consensus       199 ~aa  201 (318)
                      ++.
T Consensus        98 iDC  100 (156)
T PHA01634         98 MDC  100 (156)
T ss_pred             EEc
Confidence            543

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.44  E-value=0.2  Score=45.34  Aligned_cols=106  Identities=12%  Similarity=0.167  Sum_probs=55.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++||.||+|..|...+.....  .|+.|+-|+.+.  .+...+++..     .++.+......  +.++..+|+|+.
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~~--~~~l~~l~~~-----~~i~~~~~~~~--~~~l~~adlVia   76 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPEL--TENLVKLVEE-----GKIRWKQKEFE--PSDIVDAFLVIA   76 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCCC--CHHHHHHHhC-----CCEEEEecCCC--hhhcCCceEEEE
Confidence            578999999999877665432222  488888886432  2222333332     34666543222  234568898886


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccccCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVV  243 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~v  243 (318)
                      +--   +.+.-..+. +.   .+.+..+-+-+......|..|.+
T Consensus        77 aT~---d~elN~~i~-~~---a~~~~lvn~~d~~~~~~f~~Pa~  113 (202)
T PRK06718         77 ATN---DPRVNEQVK-ED---LPENALFNVITDAESGNVVFPSA  113 (202)
T ss_pred             cCC---CHHHHHHHH-HH---HHhCCcEEECCCCccCeEEEeeE
Confidence            531   223333333 22   23444333333333345887754

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.44  E-value=0.26  Score=46.91  Aligned_cols=96  Identities=17%  Similarity=0.245  Sum_probs=63.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-CCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-LKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-l~~fD~V  197 (318)
                      ..++.+|+..|+|++|..++.+|+.  .|++|++++.+++..+.++++     |. +.+ +...+ .+.... .+.+|+|
T Consensus       167 ~~~g~~vlV~g~g~vG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~-----g~-~~v-i~~~~-~~~~~~~~~~~d~v  236 (337)
T cd05283         167 VGPGKRVGVVGIGGLGHLAVKFAKA--LGAEVTAFSRSPSKKEDALKL-----GA-DEF-IATKD-PEAMKKAAGSLDLI  236 (337)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHc-----CC-cEE-ecCcc-hhhhhhccCCceEE
Confidence            3678899999999999999999986  488999999999877776542     21 111 11110 111011 2479998


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +-..  +    . ...+....+.|+++|+++.-.
T Consensus       237 ~~~~--g----~-~~~~~~~~~~l~~~G~~v~~g  263 (337)
T cd05283         237 IDTV--S----A-SHDLDPYLSLLKPGGTLVLVG  263 (337)
T ss_pred             EECC--C----C-cchHHHHHHHhcCCCEEEEEe
Confidence            8433  1    1 124566778999999988754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.42  E-value=0.028  Score=49.48  Aligned_cols=96  Identities=18%  Similarity=0.205  Sum_probs=59.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|..||.|.+|-....+++.+  |++|+++|.++..-..+..         ..+++  .+..++   +...|+|++
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~---------~~~~~--~~l~el---l~~aDiv~~   97 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADE---------FGVEY--VSLDEL---LAQADIVSL   97 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHH---------TTEEE--SSHHHH---HHH-SEEEE
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhccc---------cccee--eehhhh---cchhhhhhh
Confidence            5789999999999998888888764  9999999999987662221         11222  233333   236898886


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ..-.  +.+.+.-+=++..+.||||++| ++.++|
T Consensus        98 ~~pl--t~~T~~li~~~~l~~mk~ga~l-vN~aRG  129 (178)
T PF02826_consen   98 HLPL--TPETRGLINAEFLAKMKPGAVL-VNVARG  129 (178)
T ss_dssp             -SSS--STTTTTSBSHHHHHTSTTTEEE-EESSSG
T ss_pred             hhcc--ccccceeeeeeeeeccccceEE-Eeccch
Confidence            5421  2222222333445899998866 555554

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02688 pyrroline-5-carboxylate reductase

Probab=94.37  E-value=0.22  Score=46.10  Aligned_cols=89  Identities=19%  Similarity=0.274  Sum_probs=54.6

Q ss_pred             CEEEEEccCCChHHHHH-HHHh-CCCCcEEEEE-eCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          123 TKIAFIGSGPLPLTSIV-LAIN-HLTTTCFDNY-DIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~-LA~~-~~~ga~V~gv-Did~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .||.+||+|.+|.+-.. |.+. +.+..+|+.+ |.+++..+.+.    + .|.    .. ..+..++   ....|+||+
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~----~-~g~----~~-~~~~~e~---~~~aDvVil   67 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ----S-LGV----KT-AASNTEV---VKSSDVIIL   67 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH----H-cCC----EE-eCChHHH---HhcCCEEEE
Confidence            47999999988765322 2221 1122378888 99987654432    2 232    22 2232222   236899997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      +-    +.....+++..+...++||..++
T Consensus        68 ~v----~~~~~~~vl~~l~~~~~~~~~iI   92 (266)
T PLN02688         68 AV----KPQVVKDVLTELRPLLSKDKLLV   92 (266)
T ss_pred             EE----CcHHHHHHHHHHHhhcCCCCEEE
Confidence            75    34567788888888888887665

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.37  E-value=0.38  Score=48.07  Aligned_cols=102  Identities=30%  Similarity=0.337  Sum_probs=68.6

Q ss_pred             CEEEEEccCCChHH-HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCC---------CCCeEEEEccccccCcC
Q 021008          123 TKIAFIGSGPLPLT-SIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDL---------STRMFFHTTDIMNVSSA  190 (318)
Q Consensus       123 ~rVL~IGsGplp~t-ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl---------~~ri~f~~gDa~~l~~~  190 (318)
                      +||..||+|=.|++ +.+||+   -|-.|+++|||++-++.=++-..-  .+|+         ..|.+|-+ |   ....
T Consensus         1 MkI~viGtGYVGLv~g~~lA~---~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTt-d---~~~a   73 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAE---LGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTT-D---YEEA   73 (414)
T ss_pred             CceEEECCchHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEc-C---HHHH
Confidence            48999999988875 477886   388999999999998876432110  1222         34566642 2   2223


Q ss_pred             CCCccEEEeccccC------CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 LKDYEVVFLAALVG------MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 l~~fD~V~~aalvg------m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....|++|++---+      .|..-=..+.+++...++...++++.|
T Consensus        74 ~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS  120 (414)
T COG1004          74 VKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS  120 (414)
T ss_pred             HhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence            34678998764321      133444678888888888888888877

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=94.33  E-value=0.25  Score=50.45  Aligned_cols=98  Identities=14%  Similarity=0.163  Sum_probs=62.9

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      .+|.+||.|.+|.... .|++   .|.+|+++|++++.++...+.... .|.  .+. ...+..++...+...|+|++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~---~G~~V~v~dr~~~~~~~l~~~~~~-~g~--~i~-~~~s~~e~v~~l~~~d~Iil~v   74 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIAS---RGFKISVYNRTYEKTEEFVKKAKE-GNT--RVK-GYHTLEELVNSLKKPRKVILLI   74 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHhhhh-cCC--cce-ecCCHHHHHhcCCCCCEEEEEe
Confidence            4799999998876642 2332   488999999999887766543332 232  221 2334444444444578888764


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .   +...-..+++.+...|+||-++ +..
T Consensus        75 ~---~~~~v~~vi~~l~~~L~~g~iI-ID~  100 (470)
T PTZ00142         75 K---AGEAVDETIDNLLPLLEKGDII-IDG  100 (470)
T ss_pred             C---ChHHHHHHHHHHHhhCCCCCEE-EEC
Confidence            2   3345567889999999988665 444

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=94.32  E-value=0.19  Score=47.79  Aligned_cols=97  Identities=9%  Similarity=0.020  Sum_probs=65.1

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-ccc----ccCcCCC
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIM----NVSSALK  192 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~----~l~~~l~  192 (318)
                      ..++++||..|. |++|..++.+|+.  .|++|++++.+++..+.+++.    .|...-+.+... |..    .+. . .
T Consensus       149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~--~G~~Vi~~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~i~~~~-~-~  220 (338)
T cd08295         149 PKKGETVFVSAASGAVGQLVGQLAKL--KGCYVVGSAGSDEKVDLLKNK----LGFDDAFNYKEEPDLDAALKRYF-P-N  220 (338)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHh----cCCceeEEcCCcccHHHHHHHhC-C-C
Confidence            368899999997 8899999999986  499999999999877776652    232111111111 111    111 1 3


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++|+|+-.  +|    .  ..+....+.|++||+++.-.
T Consensus       221 gvd~v~d~--~g----~--~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         221 GIDIYFDN--VG----G--KMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             CcEEEEEC--CC----H--HHHHHHHHHhccCcEEEEec
Confidence            78988843  22    1  35677789999999998654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK13243 glyoxylate reductase; Reviewed

Probab=94.22  E-value=0.087  Score=51.23  Aligned_cols=91  Identities=16%  Similarity=0.171  Sum_probs=58.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|..||.|.+|......++.  .|.+|.++|.++....     ... .|.    .+  .+..++   +...|+|++
T Consensus       148 L~gktvgIiG~G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~-----~~~-~~~----~~--~~l~el---l~~aDiV~l  210 (333)
T PRK13243        148 VYGKTIGIIGFGRIGQAVARRAKG--FGMRILYYSRTRKPEA-----EKE-LGA----EY--RPLEEL---LRESDFVSL  210 (333)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH--CCCEEEEECCCCChhh-----HHH-cCC----Ee--cCHHHH---HhhCCEEEE
Confidence            478999999999988776666654  3899999999875321     112 121    22  232232   347899997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ..-.  +.+.+.-+-++....||||++|+-
T Consensus       211 ~lP~--t~~T~~~i~~~~~~~mk~ga~lIN  238 (333)
T PRK13243        211 HVPL--TKETYHMINEERLKLMKPTAILVN  238 (333)
T ss_pred             eCCC--ChHHhhccCHHHHhcCCCCeEEEE
Confidence            7522  333444444677889999987654

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.16  E-value=0.52  Score=46.97  Aligned_cols=73  Identities=12%  Similarity=0.033  Sum_probs=47.7

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh-HHHHH-HHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP-SANSK-ALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~-~ai~~-Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .+++|+.+|+|+.|++......+  .|+.|+++|.++ +.++. ..++ .+     .+++++.+|..+  ...+.+|+|+
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~~~~~~~~~~~l-~~-----~~~~~~~~~~~~--~~~~~~d~vv   73 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKEEDQLKEALEEL-GE-----LGIELVLGEYPE--EFLEGVDLVV   73 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchHHHHHHHHHH-Hh-----cCCEEEeCCcch--hHhhcCCEEE
Confidence            46899999999877765443333  499999999986 33222 2222 22     235677777765  2335799988


Q ss_pred             ecccc
Q 021008          199 LAALV  203 (318)
Q Consensus       199 ~aalv  203 (318)
                      .+.-+
T Consensus        74 ~~~g~   78 (450)
T PRK14106         74 VSPGV   78 (450)
T ss_pred             ECCCC
Confidence            77644

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=94.13  E-value=0.28  Score=47.91  Aligned_cols=98  Identities=17%  Similarity=0.160  Sum_probs=65.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc---c----ccccCcCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT---D----IMNVSSAL  191 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g---D----a~~l~~~l  191 (318)
                      .++.+||..|+|++|..++.+|+.  .|+ .|++++.+++..+.+++     .|...-+.....   +    +.++. .-
T Consensus       202 ~~g~~VlV~g~g~vG~~ai~lA~~--~G~~~vi~~~~~~~~~~~~~~-----~g~~~~v~~~~~~~~~~~~~v~~~~-~g  273 (384)
T cd08265         202 RPGAYVVVYGAGPIGLAAIALAKA--AGASKVIAFEISEERRNLAKE-----MGADYVFNPTKMRDCLSGEKVMEVT-KG  273 (384)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH-----cCCCEEEcccccccccHHHHHHHhc-CC
Confidence            678899999999999999999986  477 79999999886666554     343211111110   1    11222 12


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+|+|+-.  .|    .....+.+..+.|+++|+++.-.
T Consensus       274 ~gvDvvld~--~g----~~~~~~~~~~~~l~~~G~~v~~g  307 (384)
T cd08265         274 WGADIQVEA--AG----APPATIPQMEKSIAINGKIVYIG  307 (384)
T ss_pred             CCCCEEEEC--CC----CcHHHHHHHHHHHHcCCEEEEEC
Confidence            369988743  22    22346777889999999998754

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.13  E-value=0.36  Score=46.82  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=59.6

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHH--hhcCCCCCCCeEEEE-ccccccCcCCCCccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSL--VSSDPDLSTRMFFHT-TDIMNVSSALKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~--~~~~~gl~~ri~f~~-gDa~~l~~~l~~fD~  196 (318)
                      +.+||..||+|.+|.+....+..  .| ..++-+|++++.. .++.+  .....-.+...++.. +|..    ++.+.|+
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~--~gl~~i~LvDi~~~~~-~~~~ld~~~~~~~~~~~~~I~~~~d~~----~l~~aDi   77 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVL--KNLGDVVLFDIVKNIP-QGKALDISHSNVIAGSNSKVIGTNNYE----DIAGSDV   77 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCCchh-hHHHHHHHhhhhccCCCeEEEECCCHH----HhCCCCE
Confidence            44799999999988877665442  45 4799999999853 22222  111011122344543 5543    3457899


Q ss_pred             EEeccccC----C-------------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVG----M-------------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvg----m-------------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |++.+-++    +             +.+-+.++.+.+.+.. |.|.+++-+
T Consensus        78 VI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~s  128 (321)
T PTZ00082         78 VIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVIT  128 (321)
T ss_pred             EEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            99866442    2             2233566666666555 555544433

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.11  E-value=0.44  Score=45.32  Aligned_cols=101  Identities=22%  Similarity=0.224  Sum_probs=57.3

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHH--hhcCCCCCCCeEEE-EccccccCcCCCCccEEEe
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSL--VSSDPDLSTRMFFH-TTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~--~~~~~gl~~ri~f~-~gDa~~l~~~l~~fD~V~~  199 (318)
                      +||..||+|.+|.+..........+ +|+-+|++++.. .+...  .....-.....++. ++|..    +....|+|++
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~-~~~~~dl~~~~~~~~~~~~i~~~~d~~----~~~~aDiVii   76 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVP-QGKALDIAEAAPVEGFDTKITGTNDYE----DIAGSDVVVI   76 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchh-HHHHHHHHhhhhhcCCCcEEEeCCCHH----HHCCCCEEEE
Confidence            5999999999887765554432123 999999999875 33222  11101011223333 23432    3357899998


Q ss_pred             ccccCC------------ChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AALVGM------------DKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalvgm------------~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      ++-++.            +.+.+.++++.+.+.. |.+.+++.
T Consensus        77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~  118 (307)
T PRK06223         77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVV  118 (307)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence            764421            1234666777776665 55654443

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.07  E-value=0.14  Score=49.81  Aligned_cols=101  Identities=13%  Similarity=0.080  Sum_probs=62.6

Q ss_pred             hcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE-EccccccCcCCCCc
Q 021008          116 QHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH-TTDIMNVSSALKDY  194 (318)
Q Consensus       116 ~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~-~gDa~~l~~~l~~f  194 (318)
                      ++...++++|-.+|.|.+|--++.+|+.+  |.+|++||-+..-=   ++.++. +|...=+.+. ..|...-  ..+..
T Consensus       176 ~~g~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kk---eea~~~-LGAd~fv~~~~d~d~~~~--~~~~~  247 (360)
T KOG0023|consen  176 RSGLGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKK---EEAIKS-LGADVFVDSTEDPDIMKA--IMKTT  247 (360)
T ss_pred             HcCCCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhH---HHHHHh-cCcceeEEecCCHHHHHH--HHHhh
Confidence            33447999999999999999999999975  99999999997332   333444 4443333332 2222211  11234


Q ss_pred             cEEE--eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVF--LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~--~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |.+.  +..+.       ..-++.+.+.||++|++++-.
T Consensus       248 dg~~~~v~~~a-------~~~~~~~~~~lk~~Gt~V~vg  279 (360)
T KOG0023|consen  248 DGGIDTVSNLA-------EHALEPLLGLLKVNGTLVLVG  279 (360)
T ss_pred             cCcceeeeecc-------ccchHHHHHHhhcCCEEEEEe
Confidence            4322  12111       123455568999999998876

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=94.06  E-value=0.15  Score=49.34  Aligned_cols=97  Identities=13%  Similarity=0.104  Sum_probs=64.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc--c----ccccCcCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT--D----IMNVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g--D----a~~l~~~l  191 (318)
                      ..++.+||..|+|++|..++.+|+..  |+ .|++++.+++..+.++++     |...-+.....  +    +.++. . 
T Consensus       181 ~~~g~~vlI~g~g~vG~~a~~~a~~~--G~~~v~~~~~~~~~~~~~~~~-----g~~~~v~~~~~~~~~~~~l~~~~-~-  251 (365)
T cd05279         181 VTPGSTCAVFGLGGVGLSVIMGCKAA--GASRIIAVDINKDKFEKAKQL-----GATECINPRDQDKPIVEVLTEMT-D-  251 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHh-----CCCeecccccccchHHHHHHHHh-C-
Confidence            36789999999999999999999864  77 489999999887777553     32111111111  1    11222 2 


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhcc-CCeEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMA-PGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~Lk-pGg~lv~r~  231 (318)
                      +.+|+|+-..  |     ....+....+.++ +||+++.-.
T Consensus       252 ~~~d~vid~~--g-----~~~~~~~~~~~l~~~~G~~v~~g  285 (365)
T cd05279         252 GGVDYAFEVI--G-----SADTLKQALDATRLGGGTSVVVG  285 (365)
T ss_pred             CCCcEEEECC--C-----CHHHHHHHHHHhccCCCEEEEEe
Confidence            3699988433  2     1345667788999 999998754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=94.02  E-value=0.058  Score=52.14  Aligned_cols=103  Identities=20%  Similarity=0.241  Sum_probs=70.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc--ccC---------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM--NVS---------  188 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~--~l~---------  188 (318)
                      .+|.+++-+|.|-.|+.++..+.+  .|+.|+..|.-+..-+.-+.+-++....+ .-+  .++.+  +++         
T Consensus       162 v~pA~vlv~G~Gvagl~aiata~~--lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~-~ee--~~gGYAk~ms~~~~~~q~~  236 (356)
T COG3288         162 VSPAKVLVIGAGVAGLAAIATAVR--LGAIVTARDLRMFKKEQVESLGAKFLAVE-DEE--SAGGYAKEMSEEFIAKQAE  236 (356)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHhh--cceEEehhhhhhHHhhhhhhccccccccc-ccc--cCCCccccCCHHHHHHHHH
Confidence            678999999999999999988875  59999999998866544443333211111 111  33332  222         


Q ss_pred             ---cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          189 ---SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       189 ---~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                         ...+++|+|+..++++--+.+| -+-+++..-||||.+++
T Consensus       237 ~~a~~~~~~DivITTAlIPGrpAP~-Lvt~~mv~sMkpGSViV  278 (356)
T COG3288         237 LVAEQAKEVDIVITTALIPGRPAPK-LVTAEMVASMKPGSVIV  278 (356)
T ss_pred             HHHHHhcCCCEEEEecccCCCCCch-hhHHHHHHhcCCCcEEE
Confidence               1235899999999995433444 48888999999998764

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.01  E-value=0.19  Score=43.36  Aligned_cols=101  Identities=22%  Similarity=0.303  Sum_probs=61.9

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc---C--CCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS---D--PDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~---~--~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      +|..||+|..|.+.-.+...  -|.+|+-...+++.++.=++.-..   .  ..+..++.+ +.|..+   .....|+|+
T Consensus         1 KI~ViGaG~~G~AlA~~la~--~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~---a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLAD--NGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEE---ALEDADIII   74 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--CTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHH---HHTT-SEEE
T ss_pred             CEEEECcCHHHHHHHHHHHH--cCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHH---HhCcccEEE
Confidence            68999999988776555443  478999999999766654432221   0  112345554 344433   234679888


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                      ++-    +...-..+++++..++++|..++.- ..|+
T Consensus        75 iav----Ps~~~~~~~~~l~~~l~~~~~ii~~-~KG~  106 (157)
T PF01210_consen   75 IAV----PSQAHREVLEQLAPYLKKGQIIISA-TKGF  106 (157)
T ss_dssp             E-S-----GGGHHHHHHHHTTTSHTT-EEEET-S-SE
T ss_pred             ecc----cHHHHHHHHHHHhhccCCCCEEEEe-cCCc
Confidence            764    3344567999999999888777653 3443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=94.01  E-value=0.44  Score=43.32  Aligned_cols=101  Identities=14%  Similarity=0.153  Sum_probs=64.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-ccccc------CcCC-
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMNV------SSAL-  191 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~l------~~~l-  191 (318)
                      .++.+|||+|+.|+..|-... ++-.|..-|.|||+=+         +.    ....++++.+ |+.|-      -+.+ 
T Consensus        68 ~p~~~VlD~G~APGsWsQVav-qr~~p~g~v~gVDllh---------~~----p~~Ga~~i~~~dvtdp~~~~ki~e~lp  133 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAV-QRVNPNGMVLGVDLLH---------IE----PPEGATIIQGNDVTDPETYRKIFEALP  133 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHH-HhhCCCceEEEEeeee---------cc----CCCCcccccccccCCHHHHHHHHHhCC
Confidence            789999999999987775433 3345889999999843         11    1245566666 66651      1112 


Q ss_pred             -CCccEEEecccc---CCChhHHHHHHHHH-------HHhccCCeEEEEEcCCC
Q 021008          192 -KDYEVVFLAALV---GMDKDEKIRVIDHL-------AKYMAPGALLMLRSAHG  234 (318)
Q Consensus       192 -~~fD~V~~aalv---gm~~~~k~~vl~~l-------~r~LkpGg~lv~r~~~g  234 (318)
                       ...|+|+.+-.-   |....+-.+.++-+       ...++|+|.+++.--.|
T Consensus       134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g  187 (232)
T KOG4589|consen  134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG  187 (232)
T ss_pred             CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence             267888855322   33344555555555       34568999999887555

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.98  E-value=0.21  Score=49.36  Aligned_cols=101  Identities=16%  Similarity=0.157  Sum_probs=79.6

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC-CccEEEec
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK-DYEVVFLA  200 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~-~fD~V~~a  200 (318)
                      +.+|+|-=|| .|.=+|.+|.+. +...|+.=||||+|++..+++++.  ..+.....+..|+..+..... .||+|=++
T Consensus        53 ~~~v~Dalsa-tGiRgIRya~E~-~~~~v~lNDisp~Avelik~Nv~~--N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD  128 (380)
T COG1867          53 PKRVLDALSA-TGIRGIRYAVET-GVVKVVLNDISPKAVELIKENVRL--NSGEDAEVINKDANALLHELHRAFDVIDID  128 (380)
T ss_pred             CeEEeecccc-cchhHhhhhhhc-CccEEEEccCCHHHHHHHHHHHHh--cCcccceeecchHHHHHHhcCCCccEEecC
Confidence            8999999998 589999999863 344899999999999999999986  233445555589887765543 89998877


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -+     ....-+++...+.++.||.|.+.-
T Consensus       129 PF-----GSPaPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         129 PF-----GSPAPFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             CC-----CCCchHHHHHHHHhhcCCEEEEEe
Confidence            54     344668888899999999998855

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=93.97  E-value=0.29  Score=46.00  Aligned_cols=95  Identities=14%  Similarity=0.156  Sum_probs=63.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc----CcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV----SSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l----~~~l~~f  194 (318)
                      .++.+||.+|+|.+|..++.+|+..  |++ |+.++.+++..+.++++     |..   .++..+-.+.    ......+
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~-----g~~---~~~~~~~~~~~~~~~~~~~~v  227 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKKL-----GAT---ETVDPSREDPEAQKEDNPYGF  227 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHh-----CCe---EEecCCCCCHHHHHHhcCCCC
Confidence            6789999999988888999999864  877 89999998877766442     322   2221111110    0122469


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+++-..  +     ....+....+.|+++|+++.-.
T Consensus       228 d~v~~~~--~-----~~~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         228 DVVIEAT--G-----VPKTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             cEEEECC--C-----ChHHHHHHHHHHhcCCEEEEEe
Confidence            9988432  1     1346777789999999998754

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.95  E-value=0.24  Score=49.44  Aligned_cols=71  Identities=23%  Similarity=0.232  Sum_probs=53.6

Q ss_pred             CEEEEEccCCChHHHHHH-HHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---cCCCCccEEE
Q 021008          123 TKIAFIGSGPLPLTSIVL-AINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---SALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~L-A~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---~~l~~fD~V~  198 (318)
                      ++||.||||..|-+.... |++  ...+|+..|.+++..+++.....      .++++++-|+.+.+   .-++++|+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs~~~~~~i~~~~~------~~v~~~~vD~~d~~al~~li~~~d~VI   73 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRSKEKCARIAELIG------GKVEALQVDAADVDALVALIKDFDLVI   73 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhhcc------ccceeEEecccChHHHHHHHhcCCEEE
Confidence            689999999988877665 543  23899999999977777654322      38999999998753   3345889999


Q ss_pred             ecc
Q 021008          199 LAA  201 (318)
Q Consensus       199 ~aa  201 (318)
                      ..+
T Consensus        74 n~~   76 (389)
T COG1748          74 NAA   76 (389)
T ss_pred             EeC
Confidence            776

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=93.93  E-value=0.21  Score=48.37  Aligned_cols=104  Identities=25%  Similarity=0.285  Sum_probs=69.6

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-CCC-----CeEEEEccccccCc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-LST-----RMFFHTTDIMNVSS  189 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l~~-----ri~f~~gDa~~l~~  189 (318)
                      -++|..||+|.+|-.-...+..  -|..|+-+|+++++++.+++.+.+.      .| +..     .+..+.. ..++ .
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~--~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~-~~~~-~   78 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFAL--AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITP-TTDL-A   78 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhh--cCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccc-cCch-h
Confidence            4689999999987654333322  4689999999999999987665541      01 110     0111100 0111 1


Q ss_pred             CCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          190 ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +++..|+|+=+..-  +.+-|.++|+++-++++|++.|.-+.
T Consensus        79 ~l~~~DlVIEAv~E--~levK~~vf~~l~~~~~~~aIlASNT  118 (307)
T COG1250          79 ALKDADLVIEAVVE--DLELKKQVFAELEALAKPDAILASNT  118 (307)
T ss_pred             HhccCCEEEEeccc--cHHHHHHHHHHHHhhcCCCcEEeecc
Confidence            44578999855532  67899999999999999999998766

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.92  E-value=0.21  Score=47.92  Aligned_cols=94  Identities=15%  Similarity=0.164  Sum_probs=53.3

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc---CCC--CCCCeEEEEccccccCcCCCCcc
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS---DPD--LSTRMFFHTTDIMNVSSALKDYE  195 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~---~~g--l~~ri~f~~gDa~~l~~~l~~fD  195 (318)
                      ...||.+||+|.+|..-.....+  .|..|+.++.+++..+..++....   ..|  +..++.. ..|..+   .....|
T Consensus         3 ~~m~I~iIG~G~mG~~ia~~L~~--~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~-~~~~~e---~~~~aD   76 (328)
T PRK14618          3 HGMRVAVLGAGAWGTALAVLAAS--KGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYP-TADPEE---ALAGAD   76 (328)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE-eCCHHH---HHcCCC
Confidence            35699999999987664333222  378999999999876665543211   001  1111221 222222   234689


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      +|++.-    +    ...++++.+.++|+..++
T Consensus        77 ~Vi~~v----~----~~~~~~v~~~l~~~~~vi  101 (328)
T PRK14618         77 FAVVAV----P----SKALRETLAGLPRALGYV  101 (328)
T ss_pred             EEEEEC----c----hHHHHHHHHhcCcCCEEE
Confidence            888764    1    112455667788876554

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=93.91  E-value=0.15  Score=48.24  Aligned_cols=97  Identities=19%  Similarity=0.212  Sum_probs=63.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~f  194 (318)
                      .++.+||..|+|++|..++.+|+.+  |. .|++++.+++..+.++++     |...-+.....+.    ..+. ....+
T Consensus       166 ~~~~~VlI~g~g~vg~~~iqlak~~--g~~~v~~~~~~~~~~~~~~~~-----g~~~vi~~~~~~~~~~i~~~~-~~~~~  237 (347)
T cd05278         166 KPGSTVAVIGAGPVGLCAVAGARLL--GAARIIAVDSNPERLDLAKEA-----GATDIINPKNGDIVEQILELT-GGRGV  237 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHh-----CCcEEEcCCcchHHHHHHHHc-CCCCC
Confidence            5788999999988899999999864  75 889999998877776653     2111111111111    1111 22469


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+++-..  +    . ...+....+.|+++|+++.-.
T Consensus       238 d~vld~~--g----~-~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         238 DCVIEAV--G----F-EETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             cEEEEcc--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence            9888432  1    1 246777789999999988653

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=93.91  E-value=0.29  Score=52.17  Aligned_cols=91  Identities=14%  Similarity=0.091  Sum_probs=59.5

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      ++|.+||+|.+|.+.....++.....+|+++|.+++..+.+++     .|...  . ..   .++.......|+|+++. 
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~-----~g~~~--~-~~---~~~~~~~~~aDvVilav-   71 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS-----LGVID--R-GE---EDLAEAVSGADVIVLAV-   71 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH-----CCCCC--c-cc---CCHHHHhcCCCEEEECC-
Confidence            6899999999887765554432112579999999988777643     23211  0 01   12212234789999876 


Q ss_pred             cCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          203 VGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                         +......+++++.+.++++.+++
T Consensus        72 ---p~~~~~~vl~~l~~~~~~~~ii~   94 (735)
T PRK14806         72 ---PVLAMEKVLADLKPLLSEHAIVT   94 (735)
T ss_pred             ---CHHHHHHHHHHHHHhcCCCcEEE
Confidence               44567788899988888876554

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=93.91  E-value=0.37  Score=45.23  Aligned_cols=107  Identities=13%  Similarity=0.142  Sum_probs=66.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHh---C-CCCcEEEEEeC--------------------------ChHHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAIN---H-LTTTCFDNYDI--------------------------DPSANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~---~-~~ga~V~gvDi--------------------------d~~ai~~Ar~~~~~  169 (318)
                      .-|.-|++.|+- -|.|++.++.-   + .++-+|.++|-                          .....+..++++.+
T Consensus        73 ~vpGdivE~GV~-rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~  151 (248)
T PF05711_consen   73 DVPGDIVECGVW-RGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR  151 (248)
T ss_dssp             TS-SEEEEE--T-TSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred             CCCeEEEEEeeC-CCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence            678899999997 56666665431   2 13456777762                          11245556677776


Q ss_pred             CCCC-CCCeEEEEccccc-cCcC-CCCccEEEeccccCCCh-hHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          170 DPDL-STRMFFHTTDIMN-VSSA-LKDYEVVFLAALVGMDK-DEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       170 ~~gl-~~ri~f~~gDa~~-l~~~-l~~fD~V~~aalvgm~~-~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                       .|+ .++++|+.|...+ +|.. ...+-++.++.    |. +.-...|+.++.+|.|||++++++.
T Consensus       152 -~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~----DlYesT~~aLe~lyprl~~GGiIi~DDY  213 (248)
T PF05711_consen  152 -YGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC----DLYESTKDALEFLYPRLSPGGIIIFDDY  213 (248)
T ss_dssp             -TTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             -cCCCcccEEEECCcchhhhccCCCccEEEEEEec----cchHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence             664 6799999999875 3321 12455566664    32 6778899999999999999999984

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.84  E-value=0.38  Score=45.46  Aligned_cols=96  Identities=18%  Similarity=0.227  Sum_probs=57.8

Q ss_pred             CEEEEEccCCChHHHHHH-HHh-CCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          123 TKIAFIGSGPLPLTSIVL-AIN-HLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~L-A~~-~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      .+|.+||+|.+|.+...- .+. +.+..+|+++|.+++..+.   +.+. .|    ++. ..|..++   ....|+||++
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~---l~~~-~g----~~~-~~~~~e~---~~~aDiIiLa   70 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKN---ASDK-YG----ITI-TTNNNEV---ANSADILILS   70 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHH---HHHh-cC----cEE-eCCcHHH---HhhCCEEEEE
Confidence            489999999887664331 121 1133479999999866544   3333 23    222 2333332   2367999987


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                      -    .+..-..+++++...++++ .+++.-.-|.
T Consensus        71 v----kP~~~~~vl~~l~~~~~~~-~lvISi~AGi  100 (272)
T PRK12491         71 I----KPDLYSSVINQIKDQIKND-VIVVTIAAGK  100 (272)
T ss_pred             e----ChHHHHHHHHHHHHhhcCC-cEEEEeCCCC
Confidence            6    3456677888888878776 4555554443

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.83  E-value=0.71  Score=44.31  Aligned_cols=103  Identities=19%  Similarity=0.213  Sum_probs=60.8

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHH-HHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANS-KALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~-~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      .+|..||+|..|.+.............|.-+|++++..+ .|..+... ........+..+|..    +....|+|++++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~~----~l~~aDiViita   75 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDYA----DCKGADVVVITA   75 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCHH----HhCCCCEEEEcc
Confidence            379999999988887665443212268999999987654 45555443 222233444444432    345899999887


Q ss_pred             ccC----CChh--------HHHHHHHHHHHhccCCeEEEEEc
Q 021008          202 LVG----MDKD--------EKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       202 lvg----m~~~--------~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -.+    ++..        --.++.+.+.+ ..|.|.+++..
T Consensus        76 ~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~t  116 (308)
T cd05292          76 GANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVT  116 (308)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEec
Confidence            653    2211        12234444443 34677776664

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=93.82  E-value=1.2  Score=42.20  Aligned_cols=141  Identities=18%  Similarity=0.186  Sum_probs=90.8

Q ss_pred             CCCcccccCCcChhhHHHh-------------hHHHHHHHhhcc-----cCCCCEEEEEccCCChHHHHHHHHhCC---C
Q 021008           88 ENPIANLNIFPYYSNYIKL-------------SQLEFNILTQHC-----SRFPTKIAFIGSGPLPLTSIVLAINHL---T  146 (318)
Q Consensus        88 ~~P~~~L~~fpY~~ny~~L-------------~~~E~~~l~~~~-----~~~~~rVL~IGsGplp~tai~LA~~~~---~  146 (318)
                      ..|.++|....+||.--+.             ++.|...+....     ...+....++|||.---|.+.+-. +.   .
T Consensus        27 ~qtpktlpP~~FYD~~GS~LFe~I~~LPEYYpTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda-~~~~~~  105 (321)
T COG4301          27 QQTPKTLPPKYFYDDRGSELFEQITRLPEYYPTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDA-LAHRGS  105 (321)
T ss_pred             hcCCcCCCCceeecccHHHHHHHHhccccccCchhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHH-hhhcCC
Confidence            4555667777777643222             233433333332     256899999999987777766543 21   1


Q ss_pred             CcEEEEEeCChHHHHHH-HHHhhcCCCCCCCeEEEEccccccCcCCC---CccEEEeccccC-CChhHHHHHHHHHHHhc
Q 021008          147 TTCFDNYDIDPSANSKA-LSLVSSDPDLSTRMFFHTTDIMNVSSALK---DYEVVFLAALVG-MDKDEKIRVIDHLAKYM  221 (318)
Q Consensus       147 ga~V~gvDid~~ai~~A-r~~~~~~~gl~~ri~f~~gDa~~l~~~l~---~fD~V~~aalvg-m~~~~k~~vl~~l~r~L  221 (318)
                      -.+.+-||+|...+... +.+....++  -.|.-++||-......+.   .-=.+|+-+.+| +++.+...++.+++..|
T Consensus       106 ~~ryvpiDv~a~iL~~ta~ai~~~y~~--l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~  183 (321)
T COG4301         106 LLRYVPIDVSASILRATATAILREYPG--LEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGAL  183 (321)
T ss_pred             cceeeeecccHHHHHHHHHHHHHhCCC--CeEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcC
Confidence            26899999999988654 555555334  457777777643212222   222566666554 36789999999999999


Q ss_pred             cCCeEEEEEc
Q 021008          222 APGALLMLRS  231 (318)
Q Consensus       222 kpGg~lv~r~  231 (318)
                      +||-.+++--
T Consensus       184 ~pGd~~LlGv  193 (321)
T COG4301         184 RPGDYFLLGV  193 (321)
T ss_pred             CCcceEEEec
Confidence            9999988744

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=93.81  E-value=0.65  Score=45.86  Aligned_cols=76  Identities=14%  Similarity=0.133  Sum_probs=49.7

Q ss_pred             CCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      +..++|..|| .|-+|.+.....++  .|..|+++|.++..                       +..++   ....|+|+
T Consensus        96 ~~~~~I~IiGG~GlmG~slA~~l~~--~G~~V~~~d~~~~~-----------------------~~~~~---~~~aDlVi  147 (374)
T PRK11199         96 PDLRPVVIVGGKGQLGRLFAKMLTL--SGYQVRILEQDDWD-----------------------RAEDI---LADAGMVI  147 (374)
T ss_pred             cccceEEEEcCCChhhHHHHHHHHH--CCCeEEEeCCCcch-----------------------hHHHH---HhcCCEEE
Confidence            3448999999 89887775333333  47889999986410                       11111   23689999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      ++.    +.....++++++.. ++||.+|+
T Consensus       148 lav----P~~~~~~~~~~l~~-l~~~~iv~  172 (374)
T PRK11199        148 VSV----PIHLTEEVIARLPP-LPEDCILV  172 (374)
T ss_pred             EeC----cHHHHHHHHHHHhC-CCCCcEEE
Confidence            886    33566788888877 77766543

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=93.80  E-value=0.29  Score=46.24  Aligned_cols=95  Identities=13%  Similarity=0.030  Sum_probs=59.1

Q ss_pred             CCCEEEEE--ccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc----ccCcCCCCc
Q 021008          121 FPTKIAFI--GSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM----NVSSALKDY  194 (318)
Q Consensus       121 ~~~rVL~I--GsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~----~l~~~l~~f  194 (318)
                      .+.+++.+  |+|++|..++.+|+.  .|++|++++.+++..+.++++     |...-+.....+..    ++. .-..+
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~--~G~~vi~~~~~~~~~~~~~~~-----g~~~~i~~~~~~~~~~v~~~~-~~~~~  213 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKA--DGIKVINIVRRKEQVDLLKKI-----GAEYVLNSSDPDFLEDLKELI-AKLNA  213 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHc-----CCcEEEECCCccHHHHHHHHh-CCCCC
Confidence            45566664  889999999999986  499999999999887777653     22111111111111    111 11268


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+-..  |    .  .......+.+++||+++.-.
T Consensus       214 d~vid~~--g----~--~~~~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         214 TIFFDAV--G----G--GLTGQILLAMPYGSTLYVYG  242 (324)
T ss_pred             cEEEECC--C----c--HHHHHHHHhhCCCCEEEEEE
Confidence            9888432  2    1  12334567899999987754

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=93.79  E-value=0.71  Score=44.15  Aligned_cols=103  Identities=17%  Similarity=0.254  Sum_probs=58.8

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCC--cEEEEEeCChHHH-HHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTT--TCFDNYDIDPSAN-SKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~g--a~V~gvDid~~ai-~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ++|..||+|..|.+....+..  .|  .+++.+|++++.. ..+..+.....-....+.+..++..+    ....|+|++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~--~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~----l~~aDIVIi   74 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVN--QGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD----CKDADIVVI   74 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH----hCCCCEEEE
Confidence            489999999888777665443  24  4899999988653 33333322201112344555444333    358999998


Q ss_pred             cccc----CCChhH----HHHHHHHHHHhc---cCCeEEEEEc
Q 021008          200 AALV----GMDKDE----KIRVIDHLAKYM---APGALLMLRS  231 (318)
Q Consensus       200 aalv----gm~~~~----k~~vl~~l~r~L---kpGg~lv~r~  231 (318)
                      .+-.    +|+..+    -.+++.++.+.+   .|.|++++-+
T Consensus        75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            7654    333211    234444444444   5677766654

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.77  E-value=0.59  Score=46.79  Aligned_cols=75  Identities=11%  Similarity=0.020  Sum_probs=48.0

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHH-HHHHhhcCCCCCCCeEEEEccccccC---cCCCCccEEE
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSK-ALSLVSSDPDLSTRMFFHTTDIMNVS---SALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~-Ar~~~~~~~gl~~ri~f~~gDa~~l~---~~l~~fD~V~  198 (318)
                      .||++||.|+.|+++..++.+  .|..|++.|..+..-.. .......     ..+++..+.-.++.   ..+.++|.|+
T Consensus         1 ~~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~~~~~~~~~~~~l~~-----~gi~~~~g~~~~~~~~~~~~~~~d~vv   73 (459)
T PRK02705          1 AIAHVIGLGRSGIAAARLLKA--QGWEVVVSDRNDSPELLERQQELEQ-----EGITVKLGKPLELESFQPWLDQPDLVV   73 (459)
T ss_pred             CeEEEEccCHHHHHHHHHHHH--CCCEEEEECCCCchhhHHHHHHHHH-----cCCEEEECCccchhhhhHHhhcCCEEE
Confidence            379999999999998777765  59999999987653221 1122233     23566665533310   1234799988


Q ss_pred             eccccC
Q 021008          199 LAALVG  204 (318)
Q Consensus       199 ~aalvg  204 (318)
                      .+.-+.
T Consensus        74 ~s~gi~   79 (459)
T PRK02705         74 VSPGIP   79 (459)
T ss_pred             ECCCCC
Confidence            866553

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=93.73  E-value=0.32  Score=43.69  Aligned_cols=85  Identities=26%  Similarity=0.273  Sum_probs=50.9

Q ss_pred             EEEEEccCCChHHHHHHHH----hCCCCcEEEEEeCChHHHHHH----HHHhhcCCCCCCCeEEEEccccccCcCCCCcc
Q 021008          124 KIAFIGSGPLPLTSIVLAI----NHLTTTCFDNYDIDPSANSKA----LSLVSSDPDLSTRMFFHTTDIMNVSSALKDYE  195 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~----~~~~ga~V~gvDid~~ai~~A----r~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD  195 (318)
                      ||.+||.|..-++...+..    .-+++.+|.=+|+|++.++..    ++++++ .|.+-+++. +.|-   ...+.+.|
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~-~~~~~~v~~-ttd~---~eAl~gAD   75 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEE-AGADLKVEA-TTDR---REALEGAD   75 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHH-CTTSSEEEE-ESSH---HHHHTTES
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHh-cCCCeEEEE-eCCH---HHHhCCCC
Confidence            6899999976555433322    234688999999999888754    555666 555444332 2333   33445799


Q ss_pred             EEEeccccCCChhHHHHHHHH
Q 021008          196 VVFLAALVGMDKDEKIRVIDH  216 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~  216 (318)
                      +|+.+.-+|   ..+.+.+++
T Consensus        76 fVi~~irvG---g~~~r~~De   93 (183)
T PF02056_consen   76 FVINQIRVG---GLEAREIDE   93 (183)
T ss_dssp             EEEE---TT---HHHHHHHHH
T ss_pred             EEEEEeeec---chHHHHHHH
Confidence            999988776   344444443

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=93.69  E-value=0.38  Score=45.68  Aligned_cols=98  Identities=18%  Similarity=0.231  Sum_probs=65.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~f  194 (318)
                      .++.+||..|+|++|..++.+|+.+  | .+|+++|.++...+.++++     |...-+.....+.    .++. ....+
T Consensus       165 ~~g~~vlI~g~g~~g~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~-----g~~~~v~~~~~~~~~~i~~~~-~~~~~  236 (345)
T cd08286         165 KPGDTVAIVGAGPVGLAALLTAQLY--SPSKIIMVDLDDNRLEVAKKL-----GATHTVNSAKGDAIEQVLELT-DGRGV  236 (345)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHh-----CCCceeccccccHHHHHHHHh-CCCCC
Confidence            6789999999999999999999864  7 7899999999887776643     3322222222221    1121 22369


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+|+-..  +    . ...+..+.+.|+++|+++.-..
T Consensus       237 d~vld~~--g----~-~~~~~~~~~~l~~~g~~v~~g~  267 (345)
T cd08286         237 DVVIEAV--G----I-PATFELCQELVAPGGHIANVGV  267 (345)
T ss_pred             CEEEECC--C----C-HHHHHHHHHhccCCcEEEEecc
Confidence            9888432  2    1 2246777899999999986543

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=93.62  E-value=0.34  Score=46.11  Aligned_cols=92  Identities=20%  Similarity=0.213  Sum_probs=55.4

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      .+|.+||+|.+|.+. ..|++   .|.+|+.+|.+++..+...+     .|.    +. ..+..++.......|+|++.-
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~~-----~g~----~~-~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLR---GGHEVVGYDRNPEAVEALAE-----EGA----TG-ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHH-----CCC----ee-cCCHHHHHhhcCCCCEEEEEe
Confidence            379999999887653 22333   48899999999977765432     221    11 223333322222358888654


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      -   +...-..++..+...+++|.+++--
T Consensus        68 ~---~~~~~~~v~~~l~~~l~~g~ivid~   93 (301)
T PRK09599         68 P---AGEITDATIDELAPLLSPGDIVIDG   93 (301)
T ss_pred             c---CCcHHHHHHHHHHhhCCCCCEEEeC
Confidence            2   1224456777888889888765543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.61  E-value=0.085  Score=44.42  Aligned_cols=78  Identities=15%  Similarity=0.122  Sum_probs=49.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+++|+.||+|..+-..+.....  .|++ |+-+..+.   ++|++++.. . -+..++++.-  .++...+..+|+|+
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~--~g~~~i~i~nRt~---~ra~~l~~~-~-~~~~~~~~~~--~~~~~~~~~~DivI   80 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAA--LGAKEITIVNRTP---ERAEALAEE-F-GGVNIEAIPL--EDLEEALQEADIVI   80 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHH--TTSSEEEEEESSH---HHHHHHHHH-H-TGCSEEEEEG--GGHCHHHHTESEEE
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHH--cCCCEEEEEECCH---HHHHHHHHH-c-CccccceeeH--HHHHHHHhhCCeEE
Confidence            578999999999554444433333  3765 99999997   556666665 2 1234555443  34443445899999


Q ss_pred             eccccCCC
Q 021008          199 LAALVGMD  206 (318)
Q Consensus       199 ~aalvgm~  206 (318)
                      .+.-++|+
T Consensus        81 ~aT~~~~~   88 (135)
T PF01488_consen   81 NATPSGMP   88 (135)
T ss_dssp             E-SSTTST
T ss_pred             EecCCCCc
Confidence            88766765

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=93.60  E-value=0.36  Score=46.98  Aligned_cols=96  Identities=15%  Similarity=0.119  Sum_probs=60.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc--c----cccCcCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD--I----MNVSSALK  192 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD--a----~~l~~~l~  192 (318)
                      .++.+||..|+|++|..++.+|+.+  |+ +|+.+|.+++..+.+++     .|...-+.....+  .    .++. . .
T Consensus       189 ~~g~~VlV~G~g~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~a~~-----lGa~~~i~~~~~~~~~~~~v~~~~-~-~  259 (373)
T cd08299         189 TPGSTCAVFGLGGVGLSAIMGCKAA--GASRIIAVDINKDKFAKAKE-----LGATECINPQDYKKPIQEVLTEMT-D-G  259 (373)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH-----cCCceEecccccchhHHHHHHHHh-C-C
Confidence            6788999999999999999999864  88 89999999887776644     3332112211111  1    1121 1 3


Q ss_pred             CccEEEeccccCCChhHHHHHHHH-HHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDH-LAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~-l~r~LkpGg~lv~r~  231 (318)
                      .+|+|+-..  +    . ...+.. +...+++||+++.-.
T Consensus       260 ~~d~vld~~--g----~-~~~~~~~~~~~~~~~G~~v~~g  292 (373)
T cd08299         260 GVDFSFEVI--G----R-LDTMKAALASCHEGYGVSVIVG  292 (373)
T ss_pred             CCeEEEECC--C----C-cHHHHHHHHhhccCCCEEEEEc
Confidence            689887433  1    1 224444 444556889887765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=93.57  E-value=0.21  Score=50.23  Aligned_cols=100  Identities=26%  Similarity=0.305  Sum_probs=61.3

Q ss_pred             EEEEEccCCChHHHHH---HHHh-CCCCcEEEEEeCChHHHHHHHHHhhc---CCCCCCCeEEEEccccccCcCCCCccE
Q 021008          124 KIAFIGSGPLPLTSIV---LAIN-HLTTTCFDNYDIDPSANSKALSLVSS---DPDLSTRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       124 rVL~IGsGplp~tai~---LA~~-~~~ga~V~gvDid~~ai~~Ar~~~~~---~~gl~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      +|..||+|..|.+...   ++.. -+.|.+|+-+|+|++..+........   ..+...+++. +.|..   ..+.+.|+
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~-ttD~~---eal~~AD~   77 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEA-TTDRR---EALDGADF   77 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEE-eCCHH---HHhcCCCE
Confidence            7999999987887444   4422 24578999999999888776554432   0233333332 44432   23457899


Q ss_pred             EEeccccCCC--------hhHHHHHHHHHHHhccCCeEE
Q 021008          197 VFLAALVGMD--------KDEKIRVIDHLAKYMAPGALL  227 (318)
Q Consensus       197 V~~aalvgm~--------~~~k~~vl~~l~r~LkpGg~l  227 (318)
                      |+.+.-++..        .+.|..+++++.+.+.|||.+
T Consensus        78 Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~  116 (423)
T cd05297          78 VINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIF  116 (423)
T ss_pred             EEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHH
Confidence            9987754221        234555666666666666654

linked to 3D####ucture

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=93.56  E-value=0.31  Score=47.58  Aligned_cols=92  Identities=14%  Similarity=0.094  Sum_probs=58.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH-HHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS-ANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~-ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+++|.+||.|.+|.+...-.+.  .|..|+..+.++. ..+.    +.. .|.    .  ..|..++   ....|+|+
T Consensus        15 L~gktIgIIG~GsmG~AlA~~L~~--sG~~Vvv~~r~~~~s~~~----A~~-~G~----~--~~s~~ea---a~~ADVVv   78 (330)
T PRK05479         15 IKGKKVAIIGYGSQGHAHALNLRD--SGVDVVVGLREGSKSWKK----AEA-DGF----E--VLTVAEA---AKWADVIM   78 (330)
T ss_pred             hCCCEEEEEeeHHHHHHHHHHHHH--CCCEEEEEECCchhhHHH----HHH-CCC----e--eCCHHHH---HhcCCEEE
Confidence            457899999999887765443332  4778887776643 2233    233 333    1  2243333   23689999


Q ss_pred             eccccCCChhHHHHHH-HHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVI-DHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl-~~l~r~LkpGg~lv~r~  231 (318)
                      +..    +...-..++ +++...|+||..|++-.
T Consensus        79 LaV----Pd~~~~~V~~~~I~~~Lk~g~iL~~a~  108 (330)
T PRK05479         79 ILL----PDEVQAEVYEEEIEPNLKEGAALAFAH  108 (330)
T ss_pred             EcC----CHHHHHHHHHHHHHhcCCCCCEEEECC
Confidence            775    333446777 78999999998885543

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=93.55  E-value=0.51  Score=44.86  Aligned_cols=97  Identities=13%  Similarity=0.137  Sum_probs=64.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc----ccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM----NVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~----~l~~~l~~f  194 (318)
                      .++.+|+..|+|++|..++.+|+.+  |++ |++++-+++..+.++++     |...-+.....+..    ++ .....|
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~~-----g~~~~v~~~~~~~~~~l~~~-~~~~~~  231 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKKM-----GATYVVNPFKEDVVKEVADL-TDGEGV  231 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHh-----CCcEEEcccccCHHHHHHHh-cCCCCC
Confidence            5789999999999999999999864  886 88888888777766543     32111111111111    11 122369


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+-...   .    ...+..+.+.|+++|+++.-.
T Consensus       232 d~vld~~g---~----~~~~~~~~~~l~~~g~~v~~g  261 (340)
T TIGR00692       232 DVFLEMSG---A----PKALEQGLQAVTPGGRVSLLG  261 (340)
T ss_pred             CEEEECCC---C----HHHHHHHHHhhcCCCEEEEEc
Confidence            99986531   1    235677889999999988765

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PLN02928 oxidoreductase family protein

Probab=93.54  E-value=0.13  Score=50.40  Aligned_cols=108  Identities=16%  Similarity=0.148  Sum_probs=60.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|..||.|.+|-.....++.  -|.+|+++|.+...-......... ... .......+...++..-+...|+|++
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l~a--fG~~V~~~dr~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~L~ell~~aDiVvl  232 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRLRP--FGVKLLATRRSWTSEPEDGLLIPN-GDV-DDLVDEKGGHEDIYEFAGEADIVVL  232 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhh--CCCEEEEECCCCChhhhhhhcccc-ccc-cccccccCcccCHHHHHhhCCEEEE
Confidence            467999999999998876666664  399999999874321110000000 000 0000001122234334457899997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ..-.  +.+.+.-+=++....||||++| ++-+.|
T Consensus       233 ~lPl--t~~T~~li~~~~l~~Mk~ga~l-INvaRG  264 (347)
T PLN02928        233 CCTL--TKETAGIVNDEFLSSMKKGALL-VNIARG  264 (347)
T ss_pred             CCCC--ChHhhcccCHHHHhcCCCCeEE-EECCCc
Confidence            6522  3344443445677899998765 555444

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=93.49  E-value=0.19  Score=47.78  Aligned_cols=98  Identities=23%  Similarity=0.223  Sum_probs=64.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc-------ccccCcC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD-------IMNVSSA  190 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD-------a~~l~~~  190 (318)
                      ..++.+||..|+|++|..++.+|+.  .|++ |+.++.+++..+.++++     |...-+....-+       ..+.. .
T Consensus       160 ~~~g~~vlI~g~g~vG~~a~~lak~--~G~~~v~~~~~~~~~~~~~~~~-----g~~~vi~~~~~~~~~~~~~~~~~~-~  231 (343)
T cd05285         160 VRPGDTVLVFGAGPIGLLTAAVAKA--FGATKVVVTDIDPSRLEFAKEL-----GATHTVNVRTEDTPESAEKIAELL-G  231 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHHc-----CCcEEeccccccchhHHHHHHHHh-C
Confidence            3788999999999999999999986  4877 99999998877766553     221111111111       11121 1


Q ss_pred             CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...||+|+-..-      . ...+.+..+.|+++|+++.-.
T Consensus       232 ~~~~d~vld~~g------~-~~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         232 GKGPDVVIECTG------A-ESCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             CCCCCEEEECCC------C-HHHHHHHHHHhhcCCEEEEEc
Confidence            135999885431      1 226777789999999988654

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=93.46  E-value=0.33  Score=46.22  Aligned_cols=91  Identities=18%  Similarity=0.220  Sum_probs=55.3

Q ss_pred             EEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          124 KIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       124 rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      +|.+||+|.+|.... .|++   .|.+|+.+|.+++..+..+    . .|.    + ...+..++.......|+|++.--
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~-~g~----~-~~~s~~~~~~~~~~advVi~~vp   68 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLRE---DGHEVVGYDVNQEAVDVAG----K-LGI----T-ARHSLEELVSKLEAPRTIWVMVP   68 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHH----H-CCC----e-ecCCHHHHHHhCCCCCEEEEEec
Confidence            799999998876532 2332   4789999999997766543    2 221    1 12233333222223688886531


Q ss_pred             cCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          203 VGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                         +.+.-..+++.+...++||.+++--
T Consensus        69 ---~~~~~~~v~~~i~~~l~~g~ivid~   93 (299)
T PRK12490         69 ---AGEVTESVIKDLYPLLSPGDIVVDG   93 (299)
T ss_pred             ---CchHHHHHHHHHhccCCCCCEEEEC
Confidence               2234566778888888888766554

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.43  E-value=0.17  Score=42.52  Aligned_cols=97  Identities=12%  Similarity=0.143  Sum_probs=53.1

Q ss_pred             EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHH-HhhcCCCCCCCeEEEEcccccc-CcCCCCccEEEeccc
Q 021008          125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALS-LVSSDPDLSTRMFFHTTDIMNV-SSALKDYEVVFLAAL  202 (318)
Q Consensus       125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~-~~~~~~gl~~ri~f~~gDa~~l-~~~l~~fD~V~~aal  202 (318)
                      |+.+|+|.+|..--..-+  ..|..|+.++..+ ..+.-++ -+.- .+...+..+........ ....+.||+||++. 
T Consensus         1 I~I~G~GaiG~~~a~~L~--~~g~~V~l~~r~~-~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v-   75 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLA--QAGHDVTLVSRSP-RLEAIKEQGLTI-TGPDGDETVQPPIVISAPSADAGPYDLVIVAV-   75 (151)
T ss_dssp             EEEESTSHHHHHHHHHHH--HTTCEEEEEESHH-HHHHHHHHCEEE-EETTEEEEEEEEEEESSHGHHHSTESEEEE-S-
T ss_pred             CEEECcCHHHHHHHHHHH--HCCCceEEEEccc-cHHhhhheeEEE-EecccceecccccccCcchhccCCCcEEEEEe-
Confidence            688999976544322222  2699999999998 4333221 1111 01111111111111111 12335899999874 


Q ss_pred             cCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          203 VGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                         ..-+-..+++.+.+.++|++.+++
T Consensus        76 ---Ka~~~~~~l~~l~~~~~~~t~iv~   99 (151)
T PF02558_consen   76 ---KAYQLEQALQSLKPYLDPNTTIVS   99 (151)
T ss_dssp             ---SGGGHHHHHHHHCTGEETTEEEEE
T ss_pred             ---cccchHHHHHHHhhccCCCcEEEE
Confidence               223556689999999999966544

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.43  E-value=0.084  Score=55.70  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=29.8

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP  157 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~  157 (318)
                      .+++|+.||+||.|+++...+.+  .|.+|+-+|.++
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~  360 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHP  360 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            56899999999999999877765  488999999764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.38  E-value=0.47  Score=47.89  Aligned_cols=74  Identities=7%  Similarity=-0.023  Sum_probs=48.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH-HHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA-NSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a-i~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+++|+.||.|+.|+++..+..+  .|.+|+.+|.++.. .....+.+++     ..+++..++....   ...+|+|+
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~~~~~~~~~~~~l~~-----~gv~~~~~~~~~~---~~~~D~Vv   83 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLE--LGARVTVVDDGDDERHRALAAILEA-----LGATVRLGPGPTL---PEDTDLVV   83 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchhhhHHHHHHHHH-----cCCEEEECCCccc---cCCCCEEE
Confidence            356899999999999887665554  48999999976532 2222233343     3467777654431   23699998


Q ss_pred             ecccc
Q 021008          199 LAALV  203 (318)
Q Consensus       199 ~aalv  203 (318)
                      ++.-+
T Consensus        84 ~s~Gi   88 (480)
T PRK01438         84 TSPGW   88 (480)
T ss_pred             ECCCc
Confidence            87655

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=93.23  E-value=0.19  Score=48.71  Aligned_cols=98  Identities=20%  Similarity=0.195  Sum_probs=63.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccCc-CCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVSS-ALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~~-~l~~fD~  196 (318)
                      .++++||..|+|++|..++.+|+..  |+ .|+++|.+++..+.++++     |...-+.....+.. .+.. ....+|+
T Consensus       185 ~~g~~vlI~g~g~vG~~~~~la~~~--G~~~v~~~~~~~~k~~~~~~~-----g~~~~i~~~~~~~~~~v~~~~~~~~d~  257 (365)
T cd08278         185 RPGSSIAVFGAGAVGLAAVMAAKIA--GCTTIIAVDIVDSRLELAKEL-----GATHVINPKEEDLVAAIREITGGGVDY  257 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHc-----CCcEEecCCCcCHHHHHHHHhCCCCcE
Confidence            5789999999999999999999864  88 699999999887776543     22100111000110 1100 1236998


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+-..  |    . ...+....+.++++|+++.-.
T Consensus       258 vld~~--g----~-~~~~~~~~~~l~~~G~~v~~g  285 (365)
T cd08278         258 ALDTT--G----V-PAVIEQAVDALAPRGTLALVG  285 (365)
T ss_pred             EEECC--C----C-cHHHHHHHHHhccCCEEEEeC
Confidence            88543  1    1 235677789999999988754

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=93.22  E-value=0.13  Score=49.76  Aligned_cols=95  Identities=18%  Similarity=0.139  Sum_probs=58.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+++|..||.|.+|......++.  -|.+|+++|.++...          .+..   .+.  ...++..-+...|+|++
T Consensus       134 l~g~tvgIvG~G~IG~~vA~~l~a--fG~~V~~~~~~~~~~----------~~~~---~~~--~~~~l~e~l~~aDvvv~  196 (312)
T PRK15469        134 REDFTIGILGAGVLGSKVAQSLQT--WGFPLRCWSRSRKSW----------PGVQ---SFA--GREELSAFLSQTRVLIN  196 (312)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCCCCC----------CCce---eec--ccccHHHHHhcCCEEEE
Confidence            467899999999988765555554  399999999865321          1111   111  11233333457899886


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ..  +.+.+.+.-+-++..+.||||++| ++-+.|
T Consensus       197 ~l--Plt~~T~~li~~~~l~~mk~ga~l-IN~aRG  228 (312)
T PRK15469        197 LL--PNTPETVGIINQQLLEQLPDGAYL-LNLARG  228 (312)
T ss_pred             CC--CCCHHHHHHhHHHHHhcCCCCcEE-EECCCc
Confidence            64  224444444446688899998755 555444

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=93.20  E-value=0.22  Score=45.89  Aligned_cols=89  Identities=16%  Similarity=0.239  Sum_probs=58.8

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc--CcC-CCCccEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV--SSA-LKDYEVV  197 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l--~~~-l~~fD~V  197 (318)
                      ..-|+|+|||= -+..++.-.    .-..|+.||+++          +. .+      +...|-++.  |.. .+.||+|
T Consensus        51 ~~lrlLEVGal-s~~N~~s~~----~~fdvt~IDLns----------~~-~~------I~qqDFm~rplp~~~~e~FdvI  108 (219)
T PF11968_consen   51 PKLRLLEVGAL-STDNACSTS----GWFDVTRIDLNS----------QH-PG------ILQQDFMERPLPKNESEKFDVI  108 (219)
T ss_pred             ccceEEeeccc-CCCCccccc----CceeeEEeecCC----------CC-CC------ceeeccccCCCCCCcccceeEE
Confidence            34699999994 133332211    334699999987          11 22      345666654  322 3389998


Q ss_pred             Eeccc---cCCChhHHHHHHHHHHHhccCCeE-----EEEEcC
Q 021008          198 FLAAL---VGMDKDEKIRVIDHLAKYMAPGAL-----LMLRSA  232 (318)
Q Consensus       198 ~~aal---vgm~~~~k~~vl~~l~r~LkpGg~-----lv~r~~  232 (318)
                      .++-+   |+ ++..+-+.+..+.+.|+|+|.     |.+--+
T Consensus       109 s~SLVLNfVP-~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP  150 (219)
T PF11968_consen  109 SLSLVLNFVP-DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP  150 (219)
T ss_pred             EEEEEEeeCC-CHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence            86542   34 578999999999999999999     666554

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.19  E-value=0.34  Score=48.02  Aligned_cols=79  Identities=15%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          121 FPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       121 ~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ...+|+.||. |-+|.+-...-++. .+.+|+|+|.+.             .+.           .+........|+|++
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~d-------------~~~-----------~~~~~~v~~aDlVil   57 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPAD-------------PGS-----------LDPATLLQRADVLIF   57 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCCc-------------ccc-----------CCHHHHhcCCCEEEE
Confidence            3569999999 98776643333322 388999999841             000           111122347899999


Q ss_pred             ccccCCChhHHHHHHHHHHHh---ccCCeEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKY---MAPGALLM  228 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~---LkpGg~lv  228 (318)
                      +.    +...-.++++++.+.   ++||.++.
T Consensus        58 av----Pv~~~~~~l~~l~~~~~~l~~~~iVt   85 (370)
T PRK08818         58 SA----PIRHTAALIEEYVALAGGRAAGQLWL   85 (370)
T ss_pred             eC----CHHHHHHHHHHHhhhhcCCCCCeEEE
Confidence            87    556778899998876   68876553

>PLN02702 L-idonate 5-dehydrogenase

Probab=93.17  E-value=0.29  Score=47.15  Aligned_cols=99  Identities=17%  Similarity=0.194  Sum_probs=65.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEE--Eccccc----cCc-C
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFH--TTDIMN----VSS-A  190 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~--~gDa~~----l~~-~  190 (318)
                      ..++.+||.+|+|++|..++.+|+..  |+. |+.+|.+++..+.++++     |....+.+.  ..+..+    +.. .
T Consensus       179 ~~~g~~vlI~g~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~  251 (364)
T PLN02702        179 IGPETNVLVMGAGPIGLVTMLAARAF--GAPRIVIVDVDDERLSVAKQL-----GADEIVLVSTNIEDVESEVEEIQKAM  251 (364)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-----CCCEEEecCcccccHHHHHHHHhhhc
Confidence            36788999999999999999999864  764 88999998887777653     222222221  111111    110 1


Q ss_pred             CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+|+|+-..  +    . ...+....+.|+++|+++.-.
T Consensus       252 ~~~~d~vid~~--g----~-~~~~~~~~~~l~~~G~~v~~g  285 (364)
T PLN02702        252 GGGIDVSFDCV--G----F-NKTMSTALEATRAGGKVCLVG  285 (364)
T ss_pred             CCCCCEEEECC--C----C-HHHHHHHHHHHhcCCEEEEEc
Confidence            12689888543  1    1 235778889999999988655

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.14  E-value=0.85  Score=39.61  Aligned_cols=102  Identities=14%  Similarity=0.173  Sum_probs=54.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|+.||+|..+...+.....  .|+.|+-|+  |+..+..++       + ..+++......+  .++.++|+|+.
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~--~ga~V~VIs--p~~~~~l~~-------l-~~i~~~~~~~~~--~dl~~a~lVia   76 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKD--TGAFVTVVS--PEICKEMKE-------L-PYITWKQKTFSN--DDIKDAHLIYA   76 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEc--CccCHHHHh-------c-cCcEEEecccCh--hcCCCceEEEE
Confidence            578999999999877654332222  489999884  443332221       1 234544332222  34568898886


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccccC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPV  242 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~  242 (318)
                      +-    +..+.-..+...++   .++.+-+.+......|..|.
T Consensus        77 aT----~d~e~N~~i~~~a~---~~~~vn~~d~~~~~~f~~pa  112 (157)
T PRK06719         77 AT----NQHAVNMMVKQAAH---DFQWVNVVSDGTESSFHTPG  112 (157)
T ss_pred             CC----CCHHHHHHHHHHHH---HCCcEEECCCCCcCcEEeee
Confidence            53    23344444444444   34443333322334577774

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=93.14  E-value=0.13  Score=52.35  Aligned_cols=91  Identities=15%  Similarity=0.141  Sum_probs=57.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhC-CCCcEEE------EEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINH-LTTTCFD------NYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK  192 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~-~~ga~V~------gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~  192 (318)
                      -.+++|+.||+|..|-.   .|... -.|..|+      +||.++..-+.|.    . .|+      ..++..+   ...
T Consensus        34 LkgKtIaIIGyGSqG~A---qAlNLrdSGvnVvvglr~~~id~~~~s~~kA~----~-dGF------~v~~~~E---a~~   96 (487)
T PRK05225         34 LKGKKIVIVGCGAQGLN---QGLNMRDSGLDISYALRKEAIAEKRASWRKAT----E-NGF------KVGTYEE---LIP   96 (487)
T ss_pred             hCCCEEEEEccCHHHHH---HhCCCccccceeEEeccccccccccchHHHHH----h-cCC------ccCCHHH---HHH
Confidence            46799999999987662   22211 1355555      4555555555543    2 243      1233333   234


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..|+|++..    |.+....+.+++...||||+.|.+..
T Consensus        97 ~ADvVviLl----PDt~q~~v~~~i~p~LK~Ga~L~fsH  131 (487)
T PRK05225         97 QADLVINLT----PDKQHSDVVRAVQPLMKQGAALGYSH  131 (487)
T ss_pred             hCCEEEEcC----ChHHHHHHHHHHHhhCCCCCEEEecC
Confidence            789888654    33457888899999999999998754

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=93.10  E-value=0.47  Score=45.14  Aligned_cols=100  Identities=21%  Similarity=0.244  Sum_probs=56.0

Q ss_pred             EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHH--hhcCCCCCCCeEEE-EccccccCcCCCCccEEEecc
Q 021008          125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSL--VSSDPDLSTRMFFH-TTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~--~~~~~gl~~ri~f~-~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      |..||+|.+|.+...+......+ .|+-+|++++.. .+..+  .....-.....++. ++|..    ++...|+|++.+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~-~g~~~dl~~~~~~~~~~~~I~~t~d~~----~l~dADiVIit~   74 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLP-QGKALDISQAAPILGSDTKVTGTNDYE----DIAGSDVVVITA   74 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHH-HHHHHHHHHhhhhcCCCeEEEEcCCHH----HhCCCCEEEEec
Confidence            56899999888765544332123 999999998743 33222  11100111223443 24422    345789999866


Q ss_pred             ccC------------CChhHHHHHHHHHHHhccCCeE-EEEEc
Q 021008          202 LVG------------MDKDEKIRVIDHLAKYMAPGAL-LMLRS  231 (318)
Q Consensus       202 lvg------------m~~~~k~~vl~~l~r~LkpGg~-lv~r~  231 (318)
                      -.+            -+.+-+.++++.+.+.. |.+. +++-+
T Consensus        75 g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sN  116 (300)
T cd01339          75 GIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTN  116 (300)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence            331            13345667888887766 4555 44444

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=93.02  E-value=0.19  Score=48.16  Aligned_cols=90  Identities=24%  Similarity=0.265  Sum_probs=57.6

Q ss_pred             CEEEEEccCCChHHHHHHHHhCC-CCcEEEEEeCChHH-HHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHL-TTTCFDNYDIDPSA-NSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~-~ga~V~gvDid~~a-i~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      .||.|||-|-+|.+.   |+++. .|..|+.+|.+++. .++++.     .|.    +... +..+   .....|+|++.
T Consensus         1 ~kIafIGLG~MG~pm---A~~L~~aG~~v~v~~r~~~ka~~~~~~-----~Ga----~~a~-s~~e---aa~~aDvVitm   64 (286)
T COG2084           1 MKIAFIGLGIMGSPM---AANLLKAGHEVTVYNRTPEKAAELLAA-----AGA----TVAA-SPAE---AAAEADVVITM   64 (286)
T ss_pred             CeEEEEcCchhhHHH---HHHHHHCCCEEEEEeCChhhhhHHHHH-----cCC----cccC-CHHH---HHHhCCEEEEe
Confidence            489999999987763   33321 48999999999977 444432     222    1111 1111   12378998865


Q ss_pred             cccCCChhHHHHHH---HHHHHhccCCeEEEEEc
Q 021008          201 ALVGMDKDEKIRVI---DHLAKYMAPGALLMLRS  231 (318)
Q Consensus       201 alvgm~~~~k~~vl---~~l~r~LkpGg~lv~r~  231 (318)
                      - .  +...-..++   .-+...++||.+++--+
T Consensus        65 v-~--~~~~V~~V~~g~~g~~~~~~~G~i~IDmS   95 (286)
T COG2084          65 L-P--DDAAVRAVLFGENGLLEGLKPGAIVIDMS   95 (286)
T ss_pred             c-C--CHHHHHHHHhCccchhhcCCCCCEEEECC
Confidence            3 2  445666677   46888899999887755

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=93.01  E-value=1.3  Score=40.77  Aligned_cols=85  Identities=20%  Similarity=0.132  Sum_probs=55.3

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--c--CCCCccEEE
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--S--ALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~--~l~~fD~V~  198 (318)
                      ++++.||+|.+|.+..-....  .|-.|+.||.|++.++...+  ..     .....+++|+++..  .  ....+|+++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d~~~~~~~~~--~~-----~~~~~v~gd~t~~~~L~~agi~~aD~vv   71 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSE--EGHNVVLIDRDEERVEEFLA--DE-----LDTHVVIGDATDEDVLEEAGIDDADAVV   71 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHh--CCCceEEEEcCHHHHHHHhh--hh-----cceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence            589999999998875433322  47899999999987766322  11     33577889998731  2  234799887


Q ss_pred             eccccCCChhHHHHHHHHHHHh
Q 021008          199 LAALVGMDKDEKIRVIDHLAKY  220 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~  220 (318)
                      .+--    ..+-.-++..++..
T Consensus        72 a~t~----~d~~N~i~~~la~~   89 (225)
T COG0569          72 AATG----NDEVNSVLALLALK   89 (225)
T ss_pred             EeeC----CCHHHHHHHHHHHH
Confidence            5542    12344566666655

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=92.95  E-value=1  Score=43.39  Aligned_cols=103  Identities=17%  Similarity=0.251  Sum_probs=62.5

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH-HHHHHHHHhhcCCCCC--CCeEEEEccccccCcCCCCccEEEec
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS-ANSKALSLVSSDPDLS--TRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~-ai~~Ar~~~~~~~gl~--~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      ||..||+|..|.+..++.-...-...+.-+|++++ +...|..+... ..+.  .++++..+|..    +++..|+|++.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~y~----~~~~aDivvit   75 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGDYD----DCADADIIVIT   75 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECCHH----HhCCCCEEEEC
Confidence            58899999988887443322222457999999865 33455555443 2221  35777766643    34579998887


Q ss_pred             ccc----CCCh------hHHHHHHHHHHHhcc---CCeEEEEEc
Q 021008          201 ALV----GMDK------DEKIRVIDHLAKYMA---PGALLMLRS  231 (318)
Q Consensus       201 alv----gm~~------~~k~~vl~~l~r~Lk---pGg~lv~r~  231 (318)
                      +-.    ||+.      ..-.++++++.+.++   |.|.+++-+
T Consensus        76 aG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs  119 (307)
T cd05290          76 AGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT  119 (307)
T ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            765    4431      233556666666654   567666544

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06940 short chain dehydrogenase; Provisional

Probab=92.93  E-value=1.1  Score=41.56  Aligned_cols=101  Identities=15%  Similarity=0.115  Sum_probs=58.9

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---------cCCCC
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---------SALKD  193 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---------~~l~~  193 (318)
                      +.++..|+|.+|.   .+|+++..|++|+.+|.+++..+...+....   .+.++.++.+|+.+..         ...+.
T Consensus         3 k~~lItGa~gIG~---~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~   76 (275)
T PRK06940          3 EVVVVIGAGGIGQ---AIARRVGAGKKVLLADYNEENLEAAAKTLRE---AGFDVSTQEVDVSSRESVKALAATAQTLGP   76 (275)
T ss_pred             CEEEEECCChHHH---HHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence            4566666653333   3455544699999999998766554433333   2357888999997631         12346


Q ss_pred             ccEEEeccccCCChhHHHH-----------HHHHHHHhccCCeEEEE
Q 021008          194 YEVVFLAALVGMDKDEKIR-----------VIDHLAKYMAPGALLML  229 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~-----------vl~~l~r~LkpGg~lv~  229 (318)
                      .|+++..+-+.-...+..+           +++.+.+.|+++|.+++
T Consensus        77 id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~  123 (275)
T PRK06940         77 VTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV  123 (275)
T ss_pred             CCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence            8987765544211222222           35566677776665443

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=92.90  E-value=0.44  Score=43.59  Aligned_cols=108  Identities=9%  Similarity=0.049  Sum_probs=63.0

Q ss_pred             ccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH----H--HHHHHhhcCCCCCCCeEEEEccccccCcCC
Q 021008          118 CSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN----S--KALSLVSSDPDLSTRMFFHTTDIMNVSSAL  191 (318)
Q Consensus       118 ~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai----~--~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l  191 (318)
                      +..++.+|.++=-|.+=+| ..++....|...|+++=.++-..    .  +-+...++ .+. .+++.+-.+...+. .-
T Consensus        45 Glkpg~tVid~~PGgGy~T-rI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e-~~~-aN~e~~~~~~~A~~-~p  120 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFT-RIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE-PVY-ANVEVIGKPLVALG-AP  120 (238)
T ss_pred             ccCCCCEEEEEecCCccHh-hhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh-hhh-hhhhhhCCcccccC-CC
Confidence            3588999999988844455 45776555666888876654311    1  11111111 222 33333333433332 22


Q ss_pred             CCccEEEe--------ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 KDYEVVFL--------AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~--------aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.-|+++.        ...+  +...-.++.+++++.|||||++++-+
T Consensus       121 q~~d~~~~~~~yhdmh~k~i--~~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         121 QKLDLVPTAQNYHDMHNKNI--HPATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             Ccccccccchhhhhhhcccc--CcchHHHHHHHHHHhcCCCcEEEEEe
Confidence            24444443        3333  34566789999999999999999877

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.89  E-value=0.11  Score=45.76  Aligned_cols=82  Identities=11%  Similarity=0.138  Sum_probs=55.8

Q ss_pred             EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc-cccCcCCCCccEEEecccc
Q 021008          125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI-MNVSSALKDYEVVFLAALV  203 (318)
Q Consensus       125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa-~~l~~~l~~fD~V~~aalv  203 (318)
                      .+-||||+-         +.-||+..|-+.-.++.                  .++ .++ ...++.+++.|+++..+..
T Consensus         6 kv~ig~G~~---------r~npgWi~~d~ed~~~v------------------dlv-c~As~e~~F~dns~d~iyaeHvl   57 (185)
T COG4627           6 KVKIGAGGK---------RVNPGWIITDVEDRPEV------------------DLV-CRASNESMFEDNSVDAIYAEHVL   57 (185)
T ss_pred             EEEEecccc---------ccCCCceeeehhccccc------------------chh-hhhhhhccCCCcchHHHHHHHHH
Confidence            567999963         34489998755444421                  111 111 1345677799999866643


Q ss_pred             -CCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          204 -GMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       204 -gm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                       ++.-.+-...++++++.|||||.|-+.-+++
T Consensus        58 EHlt~~Eg~~alkechr~Lrp~G~LriAvPdl   89 (185)
T COG4627          58 EHLTYDEGTSALKECHRFLRPGGKLRIAVPDL   89 (185)
T ss_pred             HHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence             4455677889999999999999998877665

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=92.88  E-value=0.64  Score=45.13  Aligned_cols=107  Identities=14%  Similarity=0.210  Sum_probs=61.7

Q ss_pred             CCCEEEEEcc-CCChHHHHHHHHhCCCCc-----EEEEEeCChH---HHHHHHHHhhcCCCCCCCeEEEEccccccCcCC
Q 021008          121 FPTKIAFIGS-GPLPLTSIVLAINHLTTT-----CFDNYDIDPS---ANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL  191 (318)
Q Consensus       121 ~~~rVL~IGs-Gplp~tai~LA~~~~~ga-----~V~gvDid~~---ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l  191 (318)
                      +|.||..||+ |..|.+..+.......-.     .++-+|+.+.   +...|..+......+..++++..+|-    .++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~----~~~   76 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPN----VAF   76 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcH----HHh
Confidence            4789999999 998888665433211122     7999999543   34444444433112223455543332    345


Q ss_pred             CCccEEEecccc----CCCh----hHHHHHHHHHHHhc---c-CCeEEEEEc
Q 021008          192 KDYEVVFLAALV----GMDK----DEKIRVIDHLAKYM---A-PGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalv----gm~~----~~k~~vl~~l~r~L---k-pGg~lv~r~  231 (318)
                      ...|+|++.+-.    +|+.    ..-.++++++...+   . |.|++++-+
T Consensus        77 ~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (322)
T cd01338          77 KDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG  128 (322)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence            689998887755    4432    22344555555554   3 577777765

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=92.84  E-value=0.28  Score=46.46  Aligned_cols=98  Identities=19%  Similarity=0.222  Sum_probs=64.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cC--cCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VS--SALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~--~~l~~fD~  196 (318)
                      .++.+||..|+|.+|..++.+|+.  .|.+|+++..+++..+..+++     |...-+.....+..+ +.  .....+|+
T Consensus       158 ~~g~~vLI~g~g~vG~~a~~lA~~--~g~~v~~~~~s~~~~~~~~~~-----g~~~v~~~~~~~~~~~l~~~~~~~~vd~  230 (337)
T cd08261         158 TAGDTVLVVGAGPIGLGVIQVAKA--RGARVIVVDIDDERLEFAREL-----GADDTINVGDEDVAARLRELTDGEGADV  230 (337)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHHh-----CCCEEecCcccCHHHHHHHHhCCCCCCE
Confidence            678899999999889999999986  489999998888877766543     211111121111111 11  11235899


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++-..  +     ....+.++.+.|+++|.++.-.
T Consensus       231 vld~~--g-----~~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         231 VIDAT--G-----NPASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             EEECC--C-----CHHHHHHHHHHHhcCCEEEEEc
Confidence            88543  1     1235677789999999988654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=92.81  E-value=0.98  Score=40.80  Aligned_cols=101  Identities=19%  Similarity=0.162  Sum_probs=59.3

Q ss_pred             CCCEEEEEccCCChHHHH-HHHHhCCCCc-EEEEEeCC---hHHHHH---------------HHHHhhcCCCCCCCeEEE
Q 021008          121 FPTKIAFIGSGPLPLTSI-VLAINHLTTT-CFDNYDID---PSANSK---------------ALSLVSSDPDLSTRMFFH  180 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai-~LA~~~~~ga-~V~gvDid---~~ai~~---------------Ar~~~~~~~gl~~ri~f~  180 (318)
                      ...||+.||||.+|-... .||+   .|. +++-+|.|   ++-+.+               +.+...+ ....-+++.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~---~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~-inp~~~i~~~   95 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLAR---AGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISE-INPYTEIEAY   95 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHH---cCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHH-HCCCCEEEEe
Confidence            568999999998666543 3443   476 69999999   433322               1222222 1112334444


Q ss_pred             Eccccc--cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          181 TTDIMN--VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       181 ~gDa~~--l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      ..+..+  +...+.++|+|+-+ .-  +.+.|..+++.+.+.+++.-++.
T Consensus        96 ~~~i~~~~~~~~~~~~DlVi~a-~D--n~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        96 DEKITEENIDKFFKDADIVCEA-FD--NAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             eeeCCHhHHHHHhcCCCEEEEC-CC--CHHHHHHHHHHHHHHcCCCcEEE
Confidence            333332  21124579999866 21  45778888999998887644444

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=92.80  E-value=0.5  Score=44.51  Aligned_cols=87  Identities=17%  Similarity=0.227  Sum_probs=52.8

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      .+|.+||+|.+|... ..+++   .|.+|+++|.+++..+...+     .|.    .+ +.+..++   ....|+|++..
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~---~g~~v~~~d~~~~~~~~~~~-----~g~----~~-~~~~~e~---~~~~d~vi~~v   66 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLK---AGYSLVVYDRNPEAVAEVIA-----AGA----ET-ASTAKAV---AEQCDVIITML   66 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHH-----CCC----ee-cCCHHHH---HhcCCEEEEeC
Confidence            489999999887653 34443   48899999999987665432     121    11 2222222   23689999775


Q ss_pred             ccCCChhHHHHHH---HHHHHhccCCeEEE
Q 021008          202 LVGMDKDEKIRVI---DHLAKYMAPGALLM  228 (318)
Q Consensus       202 lvgm~~~~k~~vl---~~l~r~LkpGg~lv  228 (318)
                      -.   ...-..++   +.+...++||..++
T Consensus        67 p~---~~~~~~v~~~~~~~~~~~~~g~iii   93 (296)
T PRK11559         67 PN---SPHVKEVALGENGIIEGAKPGTVVI   93 (296)
T ss_pred             CC---HHHHHHHHcCcchHhhcCCCCcEEE
Confidence            21   12222333   44677788877776

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=92.80  E-value=0.21  Score=46.74  Aligned_cols=79  Identities=16%  Similarity=0.172  Sum_probs=55.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-----CCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-----ALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-----~l~~f  194 (318)
                      .+.-++||||.|+--.=.+.=.+.  .|++++|-|||+.+++.|+.++.+-+++...|+....-=.+.-+     ....|
T Consensus        77 ~~~i~~LDIGvGAnCIYPliG~~e--YgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~y  154 (292)
T COG3129          77 GKNIRILDIGVGANCIYPLIGVHE--YGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERY  154 (292)
T ss_pred             cCceEEEeeccCccccccccccee--ecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccccccee
Confidence            466799999999732222222233  49999999999999999999988756888888886553332111     12368


Q ss_pred             cEEEec
Q 021008          195 EVVFLA  200 (318)
Q Consensus       195 D~V~~a  200 (318)
                      |++...
T Consensus       155 d~tlCN  160 (292)
T COG3129         155 DATLCN  160 (292)
T ss_pred             eeEecC
Confidence            887743

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=92.79  E-value=0.36  Score=47.16  Aligned_cols=101  Identities=12%  Similarity=0.120  Sum_probs=63.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|.+||.|.+|..-...++.  .|.+|++.|..+...+.    +.. .|.    ++  .+..++   ....|+|++
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d--~G~~ViV~~r~~~s~~~----A~~-~G~----~v--~sl~Ea---ak~ADVV~l   77 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRD--SGVEVVVGVRPGKSFEV----AKA-DGF----EV--MSVSEA---VRTAQVVQM   77 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHH--CcCEEEEEECcchhhHH----HHH-cCC----EE--CCHHHH---HhcCCEEEE
Confidence            478999999999988775555544  49999998855433333    233 232    22  233333   347899987


Q ss_pred             ccccCCChhHHHHHH-HHHHHhccCCeEEEEEcCCCcccccccCC
Q 021008          200 AALVGMDKDEKIRVI-DHLAKYMAPGALLMLRSAHGARAFLYPVV  243 (318)
Q Consensus       200 aalvgm~~~~k~~vl-~~l~r~LkpGg~lv~r~~~g~r~~lYP~v  243 (318)
                      ..-   +... ..++ +.+...|+||..|++.  ||+ ...|-.+
T Consensus        78 lLP---d~~t-~~V~~~eil~~MK~GaiL~f~--hgf-ni~~~~i  115 (335)
T PRK13403         78 LLP---DEQQ-AHVYKAEVEENLREGQMLLFS--HGF-NIHFGQI  115 (335)
T ss_pred             eCC---ChHH-HHHHHHHHHhcCCCCCEEEEC--CCc-ceecCce
Confidence            642   2334 4565 5799999999988775  554 2344433

>PRK05442 malate dehydrogenase; Provisional

Probab=92.67  E-value=0.74  Score=44.82  Aligned_cols=108  Identities=17%  Similarity=0.276  Sum_probs=61.7

Q ss_pred             CCCCEEEEEcc-CCChHHHHHH-HHhCCCC----cEEEEEeCChH---HHHHHHHHhhcCCCCCCCeEEEEccccccCcC
Q 021008          120 RFPTKIAFIGS-GPLPLTSIVL-AINHLTT----TCFDNYDIDPS---ANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA  190 (318)
Q Consensus       120 ~~~~rVL~IGs-Gplp~tai~L-A~~~~~g----a~V~gvDid~~---ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~  190 (318)
                      ..|.||..||+ |..|.+..+. +..-.-+    ..++=+|+++.   +...|..+......+..++++..+|-    .+
T Consensus         2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y----~~   77 (326)
T PRK05442          2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPN----VA   77 (326)
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChH----HH
Confidence            56889999998 9988886443 2211111    27899999653   44445444443112223455544332    34


Q ss_pred             CCCccEEEecccc----CCCh----hHHHHHHHHHHHhc----cCCeEEEEEc
Q 021008          191 LKDYEVVFLAALV----GMDK----DEKIRVIDHLAKYM----APGALLMLRS  231 (318)
Q Consensus       191 l~~fD~V~~aalv----gm~~----~~k~~vl~~l~r~L----kpGg~lv~r~  231 (318)
                      +.+.|+|++.+-+    +|+.    ..-.++++++.+.+    .|.|.+++-+
T Consensus        78 ~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  130 (326)
T PRK05442         78 FKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG  130 (326)
T ss_pred             hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            4579988877655    4432    22335555555544    3577777766

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=92.66  E-value=0.52  Score=48.73  Aligned_cols=107  Identities=18%  Similarity=0.248  Sum_probs=79.2

Q ss_pred             CCEEEEEccCCChHH--HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          122 PTKIAFIGSGPLPLT--SIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       122 ~~rVL~IGsGplp~t--ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ...|+.+|.|-+|+-  ++-.|+......++.+|+-+|.|+-.-+. ... .+.+++|+++.+|..+......+.|+++.
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~-~~W~~~Vtii~~DMR~w~ap~eq~DI~VS  445 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNF-ECWDNRVTIISSDMRKWNAPREQADIIVS  445 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hch-hhhcCeeEEEeccccccCCchhhccchHH
Confidence            457788888776654  45556655557889999999999877655 333 46789999999999988654347787763


Q ss_pred             ccccCC--ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGM--DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm--~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       -|+|-  +-|-..+.|.-+-+.|||.|+-+=++
T Consensus       446 -ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s  478 (649)
T KOG0822|consen  446 -ELLGSFGDNELSPECLDGAQKFLKPDGISIPSS  478 (649)
T ss_pred             -HhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence             23321  55677889999999999999877665

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.65  E-value=0.81  Score=42.96  Aligned_cols=93  Identities=15%  Similarity=0.215  Sum_probs=54.1

Q ss_pred             CCEEEEEccCCChHHHHHHHHhC--CCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINH--LTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~--~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+|.+||+|.+|.+-..-..+.  ....+|+.+|.+++.  +++++... .|    ++. ..|..++   ....|+|++
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~--~~~~l~~~-~g----~~~-~~~~~e~---~~~aDvVil   71 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNET--RLQELHQK-YG----VKG-THNKKEL---LTDANILFL   71 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHH--HHHHHHHh-cC----ceE-eCCHHHH---HhcCCEEEE
Confidence            36899999998876543221111  122678999987632  22333333 23    222 2333332   236799998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +-    +...-.+++..+...+++|..++-
T Consensus        72 av----~p~~~~~vl~~l~~~~~~~~liIs   97 (279)
T PRK07679         72 AM----KPKDVAEALIPFKEYIHNNQLIIS   97 (279)
T ss_pred             Ee----CHHHHHHHHHHHHhhcCCCCEEEE
Confidence            76    345566788888888888765543

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.65  E-value=0.14  Score=53.98  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=29.7

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP  157 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~  157 (318)
                      .+++|+.||+||.|+++...+++  .|.+|+-+|..+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCC
Confidence            47999999999999998877765  488999998665

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.63  E-value=1  Score=43.15  Aligned_cols=96  Identities=13%  Similarity=0.215  Sum_probs=57.3

Q ss_pred             EEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHH---hhcCCC--CCCCeEEEEccccccCcCCCCccEE
Q 021008          124 KIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSL---VSSDPD--LSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       124 rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~---~~~~~g--l~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      +|..||+|.+|.+--. |++   .|..|+-++.+++.++.-++.   .....+  +...+++. .|..+..  .+.+|+|
T Consensus         2 kI~IiGaGa~G~ala~~L~~---~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~--~~~~Dli   75 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSS---KKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL--SDNATCI   75 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHH---CCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH--hCCCCEE
Confidence            7999999998775433 333   378999999998766544432   111011  22233332 2322211  1368999


Q ss_pred             EeccccCCChhHHHHHHHHHHH-hccCCeEEEE
Q 021008          198 FLAALVGMDKDEKIRVIDHLAK-YMAPGALLML  229 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r-~LkpGg~lv~  229 (318)
                      +++-    +...-..+++.+.. .++++..++.
T Consensus        76 iiav----ks~~~~~~l~~l~~~~l~~~~~vv~  104 (326)
T PRK14620         76 ILAV----PTQQLRTICQQLQDCHLKKNTPILI  104 (326)
T ss_pred             EEEe----CHHHHHHHHHHHHHhcCCCCCEEEE
Confidence            9875    33455678888887 7887775544

>PTZ00117 malate dehydrogenase; Provisional

Probab=92.62  E-value=0.8  Score=44.23  Aligned_cols=101  Identities=21%  Similarity=0.286  Sum_probs=59.3

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHH-hhc-CCCCCCCeEEEE-ccccccCcCCCCccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSL-VSS-DPDLSTRMFFHT-TDIMNVSSALKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~-~~~-~~gl~~ri~f~~-gDa~~l~~~l~~fD~  196 (318)
                      +..+|..||+|.+|.+...++..  .| +.++-+|++++..+ +..+ ... ..-.+...++.. +|-.    ++...|+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~--~~~~~l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~~----~l~~ADi   76 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQ--KNLGDVVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNNYE----DIKDSDV   76 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHH--CCCCeEEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCCHH----HhCCCCE
Confidence            45799999999988887666554  34 68999999986543 3322 111 011222344442 3322    4457899


Q ss_pred             EEeccccCCCh------------hHHHHHHHHHHHhccCCeEEEE
Q 021008          197 VFLAALVGMDK------------DEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       197 V~~aalvgm~~------------~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      |++.+-++-..            +-+.++.+.+.+. .|.+.+++
T Consensus        77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~viv  120 (319)
T PTZ00117         77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVIC  120 (319)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEE
Confidence            99877552211            3355666666655 46774444

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=92.59  E-value=1.5  Score=39.77  Aligned_cols=101  Identities=18%  Similarity=0.149  Sum_probs=57.2

Q ss_pred             CEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHH-hhcCCC-CCCCeEEEEccccccCcCCCCccEEEe
Q 021008          123 TKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSL-VSSDPD-LSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       123 ~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~-~~~~~g-l~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ++|.+|| +|.+|.+......+  .|.+|+.++.+++..+...+. ... .+ .+-.+++...+..+   .....|+|++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~--~G~~V~v~~r~~~~~~~l~~~~~~~-~~~~g~~~~~~~~~~~e---a~~~aDvVil   74 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAK--AGNKIIIGSRDLEKAEEAAAKALEE-LGHGGSDIKVTGADNAE---AAKRADVVIL   74 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHh--CCCEEEEEEcCHHHHHHHHHHHHhh-ccccCCCceEEEeChHH---HHhcCCEEEE
Confidence            4799997 89877664333222  478899999999776554332 111 11 11112222222222   2346899998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                      +.    +...-..+++.+...++ + .+++.-..|.
T Consensus        75 av----p~~~~~~~l~~l~~~l~-~-~vvI~~~ngi  104 (219)
T TIGR01915        75 AV----PWDHVLKTLESLRDELS-G-KLVISPVVPL  104 (219)
T ss_pred             EC----CHHHHHHHHHHHHHhcc-C-CEEEEeccCc
Confidence            76    33445666777766554 3 5666665554

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.59  E-value=0.55  Score=45.64  Aligned_cols=98  Identities=16%  Similarity=0.124  Sum_probs=60.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC------CCeEEEEccccccCcCCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS------TRMFFHTTDIMNVSSALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~------~ri~f~~gDa~~l~~~l~~  193 (318)
                      ....+|..||+|.+|.+......+  .| .++.+..+++.++.-++.-.....++      .++.+ ..|..   .....
T Consensus         5 ~~~mkI~IiGaGa~G~alA~~La~--~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~---~a~~~   77 (341)
T PRK12439          5 KREPKVVVLGGGSWGTTVASICAR--RG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFA---EAANC   77 (341)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHH--CC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHH---HHHhc
Confidence            456799999999987765443333  24 67888899987766654211001122      12322 22222   22347


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      .|+|+++-    +...-..+++++...++++..++
T Consensus        78 aDlVilav----ps~~~~~vl~~i~~~l~~~~~vI  108 (341)
T PRK12439         78 ADVVVMGV----PSHGFRGVLTELAKELRPWVPVV  108 (341)
T ss_pred             CCEEEEEe----CHHHHHHHHHHHHhhcCCCCEEE
Confidence            89998875    34566778999999998887554

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=92.58  E-value=3.5  Score=36.28  Aligned_cols=119  Identities=16%  Similarity=0.177  Sum_probs=72.1

Q ss_pred             ccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC
Q 021008           94 LNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL  173 (318)
Q Consensus        94 L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl  173 (318)
                      |+-|.|=+.=...+..+....    .....||++||| |-=+.+  +.+...++.++.-+|+|..-        +.   +
T Consensus         2 lsQfwYs~~T~~~l~~~l~~~----~~~~~~iaclst-Psl~~~--l~~~~~~~~~~~Lle~D~RF--------~~---~   63 (162)
T PF10237_consen    2 LSQFWYSDETAEFLARELLDG----ALDDTRIACLST-PSLYEA--LKKESKPRIQSFLLEYDRRF--------EQ---F   63 (162)
T ss_pred             ccccccCHHHHHHHHHHHHHh----cCCCCEEEEEeC-cHHHHH--HHhhcCCCccEEEEeecchH--------Hh---c
Confidence            344566666555555554432    146689999999 632222  22212468899999999732        22   2


Q ss_pred             CCCeEEEEcccc---ccCcCCC-CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          174 STRMFFHTTDIM---NVSSALK-DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       174 ~~ri~f~~gDa~---~l~~~l~-~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +.+ .|+-=|..   +++..+. +||+|+++==- +..+-..++..-+.-.+++++.+++-.+
T Consensus        64 ~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF-l~~ec~~k~a~ti~~L~k~~~kii~~Tg  124 (162)
T PF10237_consen   64 GGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF-LSEECLTKTAETIRLLLKPGGKIILCTG  124 (162)
T ss_pred             CCc-ceEECCCCChhhhhhhcCCCceEEEECCCC-CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence            233 34444443   3444443 89999987522 2456666677777777788888888764

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=92.55  E-value=0.54  Score=43.94  Aligned_cols=93  Identities=8%  Similarity=0.033  Sum_probs=62.0

Q ss_pred             CCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc-----ccccCcCCCCc
Q 021008          121 FPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD-----IMNVSSALKDY  194 (318)
Q Consensus       121 ~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD-----a~~l~~~l~~f  194 (318)
                      .+.+||.+|+ |++|..++.+|+.+  |++|+.++.+++..+.+++     .|. +.+ +...+     ...+.  ...+
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~-----~g~-~~v-~~~~~~~~~~~~~~~--~~~~  214 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKL--GYEVVASTGKADAADYLKK-----LGA-KEV-IPREELQEESIKPLE--KQRW  214 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHH-----cCC-CEE-EcchhHHHHHHHhhc--cCCc
Confidence            4679999998 99999999999874  8999999999987666644     333 111 10111     11121  1368


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+|+-..  +    .  ..++...+.|+++|+++.-..
T Consensus       215 d~vld~~--g----~--~~~~~~~~~l~~~G~~i~~g~  244 (326)
T cd08289         215 AGAVDPV--G----G--KTLAYLLSTLQYGGSVAVSGL  244 (326)
T ss_pred             CEEEECC--c----H--HHHHHHHHHhhcCCEEEEEee
Confidence            9887332  2    2  356777899999999987653

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=92.51  E-value=0.4  Score=38.51  Aligned_cols=91  Identities=14%  Similarity=0.227  Sum_probs=54.5

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEE-EEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFD-NYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~-gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      ||+.||+|..|-.-+.-..+..++.+++ .+|.+++..+.+   .+. .|..     ...|..++.. ....|+|+++. 
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~---~~~-~~~~-----~~~~~~~ll~-~~~~D~V~I~t-   70 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF---AEK-YGIP-----VYTDLEELLA-DEDVDAVIIAT-   70 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH---HHH-TTSE-----EESSHHHHHH-HTTESEEEEES-
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH---HHH-hccc-----chhHHHHHHH-hhcCCEEEEec-
Confidence            7999999965444332223333788877 579998665554   333 3332     4566666643 23799999887 


Q ss_pred             cCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          203 VGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                         +.....++.   ...++-|--+++.-
T Consensus        71 ---p~~~h~~~~---~~~l~~g~~v~~EK   93 (120)
T PF01408_consen   71 ---PPSSHAEIA---KKALEAGKHVLVEK   93 (120)
T ss_dssp             ---SGGGHHHHH---HHHHHTTSEEEEES
T ss_pred             ---CCcchHHHH---HHHHHcCCEEEEEc
Confidence               333444444   45566666666654

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=92.51  E-value=0.46  Score=47.62  Aligned_cols=100  Identities=13%  Similarity=0.011  Sum_probs=55.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+++|+.||+|++|......+..  .|+ +|+.++.+++.   ++.+... .|.    .++.  ..++......+|+|+
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~--~G~~~V~v~~r~~~r---a~~la~~-~g~----~~~~--~~~~~~~l~~aDvVI  247 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAE--KGVRKITVANRTLER---AEELAEE-FGG----EAIP--LDELPEALAEADIVI  247 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHH--CCCCeEEEEeCCHHH---HHHHHHH-cCC----cEee--HHHHHHHhccCCEEE
Confidence            567999999999988877666654  375 89999999844   4444444 331    1211  122323345799999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .+.-.+-+. -..+.++...+.=+.++.++++-+
T Consensus       248 ~aT~s~~~~-i~~~~l~~~~~~~~~~~~vviDla  280 (423)
T PRK00045        248 SSTGAPHPI-IGKGMVERALKARRHRPLLLVDLA  280 (423)
T ss_pred             ECCCCCCcE-EcHHHHHHHHhhccCCCeEEEEeC
Confidence            764221111 123333333211113456777654

>PLN02712 arogenate dehydrogenase

Probab=92.45  E-value=0.63  Score=49.60  Aligned_cols=89  Identities=18%  Similarity=0.134  Sum_probs=55.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      +.+.+|..||+|.+|.+.....++  .|.+|+++|.+... +.|    .. .|.    .+ ..|..++.  ....|+|++
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~--~G~~V~~~dr~~~~-~~A----~~-~Gv----~~-~~d~~e~~--~~~aDvViL  114 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLIS--QGHTVLAHSRSDHS-LAA----RS-LGV----SF-FLDPHDLC--ERHPDVILL  114 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHH--CCCEEEEEeCCHHH-HHH----HH-cCC----EE-eCCHHHHh--hcCCCEEEE
Confidence            566899999999877764333333  37899999998543 333    23 332    22 23333321  125899998


Q ss_pred             ccccCCChhHHHHHHHHHH-HhccCCeEE
Q 021008          200 AALVGMDKDEKIRVIDHLA-KYMAPGALL  227 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~-r~LkpGg~l  227 (318)
                      +-    +...-..+++++. ..++||.+|
T Consensus       115 av----P~~~~~~vl~~l~~~~l~~g~iV  139 (667)
T PLN02712        115 CT----SIISTENVLKSLPLQRLKRNTLF  139 (667)
T ss_pred             cC----CHHHHHHHHHhhhhhcCCCCeEE
Confidence            86    4456677888875 568888744

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=92.41  E-value=0.55  Score=44.46  Aligned_cols=98  Identities=17%  Similarity=0.180  Sum_probs=62.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE---ccccccCcCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHT---TDIMNVSSALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~---gDa~~l~~~l~~f  194 (318)
                      ..++.+||..|+|.+|..++.+|+.  .|.. |++++-+++..+..++     .|...-+....   .....+. .-..+
T Consensus       157 ~~~~~~vlI~g~g~~g~~~~~lA~~--~G~~~v~~~~~~~~~~~~l~~-----~g~~~~~~~~~~~~~~~~~~~-~~~~~  228 (343)
T cd08236         157 ITLGDTVVVIGAGTIGLLAIQWLKI--LGAKRVIAVDIDDEKLAVARE-----LGADDTINPKEEDVEKVRELT-EGRGA  228 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH-----cCCCEEecCccccHHHHHHHh-CCCCC
Confidence            3677899999999889999999986  4886 9999988876665543     23211111111   1111121 11259


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+-..  +     ....+..+.+.|+++|+++.-.
T Consensus       229 d~vld~~--g-----~~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         229 DLVIEAA--G-----SPATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             CEEEECC--C-----CHHHHHHHHHHhhcCCEEEEEc
Confidence            9988542  1     1235677789999999987654

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK15076 alpha-galactosidase; Provisional

Probab=92.39  E-value=0.096  Score=52.83  Aligned_cols=79  Identities=28%  Similarity=0.323  Sum_probs=50.8

Q ss_pred             CEEEEEccCCChHHHHH---HH-HhCCCCcEEEEEeCChHHHHHHHHHhhcCC-CCCCCeEEE-EccccccCcCCCCccE
Q 021008          123 TKIAFIGSGPLPLTSIV---LA-INHLTTTCFDNYDIDPSANSKALSLVSSDP-DLSTRMFFH-TTDIMNVSSALKDYEV  196 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~---LA-~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~-gl~~ri~f~-~gDa~~l~~~l~~fD~  196 (318)
                      .+|..||+|.+|++...   ++ ..-+++.+|+-+|+|++..+.+..+++... ..+..+++. +.|..   .++.+.|+
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~---eal~dADf   78 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRR---EALQGADY   78 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHH---HHhCCCCE
Confidence            48999999987776533   22 112367799999999999887655544310 122334554 44532   33457899


Q ss_pred             EEeccccC
Q 021008          197 VFLAALVG  204 (318)
Q Consensus       197 V~~aalvg  204 (318)
                      |+.++-+|
T Consensus        79 Vv~ti~vg   86 (431)
T PRK15076         79 VINAIQVG   86 (431)
T ss_pred             EeEeeeeC
Confidence            99988775

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=92.39  E-value=0.51  Score=48.16  Aligned_cols=96  Identities=15%  Similarity=0.200  Sum_probs=59.0

Q ss_pred             EEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          124 KIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       124 rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      +|.+||.|.+|..... |++   .|.+|+++|++++..+...+...  .|  ..+. ...+..++...+...|+|++...
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~---~G~~V~v~drt~~~~~~l~~~~~--~g--~~~~-~~~s~~e~v~~l~~~dvIil~v~   72 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMAD---HGFTVSVYNRTPEKTDEFLAEHA--KG--KKIV-GAYSIEEFVQSLERPRKIMLMVK   72 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHhhcc--CC--CCce-ecCCHHHHHhhcCCCCEEEEECC
Confidence            4789999987766422 222   38899999999988766543211  11  1122 12234444444456798887642


Q ss_pred             cCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          203 VGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                         +...-..+++.+...|++|.++ ++.
T Consensus        73 ---~~~~v~~Vi~~l~~~L~~g~iI-ID~   97 (467)
T TIGR00873        73 ---AGAPVDAVINQLLPLLEKGDII-IDG   97 (467)
T ss_pred             ---CcHHHHHHHHHHHhhCCCCCEE-EEC
Confidence               2234466888999999997655 444

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PTZ00357 methyltransferase; Provisional

Probab=92.34  E-value=1.5  Score=47.00  Aligned_cols=102  Identities=13%  Similarity=0.168  Sum_probs=68.8

Q ss_pred             EEEEEccCCChHHHHHHHH--hCCCCcEEEEEeCChHHHHHHHHHhhcCCCC-------CCCeEEEEccccccCcC----
Q 021008          124 KIAFIGSGPLPLTSIVLAI--NHLTTTCFDNYDIDPSANSKALSLVSSDPDL-------STRMFFHTTDIMNVSSA----  190 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~--~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl-------~~ri~f~~gDa~~l~~~----  190 (318)
                      .|+.+|+|-+|+-...|..  ...-..+|.+|+-+|.++...+.....+...       +++|+++.+|..++...    
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999987665543  3323578999999977554443332111223       56899999999987322    


Q ss_pred             -------CCCccEEEeccccCC--ChhHHHHHHHHHHHhccC----CeE
Q 021008          191 -------LKDYEVVFLAALVGM--DKDEKIRVIDHLAKYMAP----GAL  226 (318)
Q Consensus       191 -------l~~fD~V~~aalvgm--~~~~k~~vl~~l~r~Lkp----Gg~  226 (318)
                             .+.+|+|+.. |+|-  +-|--.+.|+-+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                   2368988833 3321  556667888888888887    665

>PRK07326 short chain dehydrogenase; Provisional

Probab=92.33  E-value=2.8  Score=37.24  Aligned_cols=76  Identities=9%  Similarity=0.020  Sum_probs=46.7

Q ss_pred             CCCEEEEEccC-CChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----------c
Q 021008          121 FPTKIAFIGSG-PLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----------S  189 (318)
Q Consensus       121 ~~~rVL~IGsG-plp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----------~  189 (318)
                      .+++|+.+|++ .+|.........  .|++|++++.+++......+....    ..++.++.+|+.+..          .
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~--~g~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLA--EGYKVAITARDQKELEEAAAELNN----KGNVLGLAADVRDEADVQRAVDAIVA   78 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHH--CCCEEEEeeCCHHHHHHHHHHHhc----cCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            45789999863 344433221112  488999999998765544333332    157888999987531          1


Q ss_pred             CCCCccEEEeccc
Q 021008          190 ALKDYEVVFLAAL  202 (318)
Q Consensus       190 ~l~~fD~V~~aal  202 (318)
                      ..+.+|+|+..+.
T Consensus        79 ~~~~~d~vi~~ag   91 (237)
T PRK07326         79 AFGGLDVLIANAG   91 (237)
T ss_pred             HcCCCCEEEECCC
Confidence            1236898886553

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=92.32  E-value=0.53  Score=44.67  Aligned_cols=96  Identities=14%  Similarity=0.071  Sum_probs=63.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE-cccc----ccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT-TDIM----NVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~-gDa~----~l~~~l~~f  194 (318)
                      .++++|+..|+|++|..++.+|+.+  |.+|++++.+++..+.+++     .|...-+.... .+..    .+..  +.+
T Consensus       164 ~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~--~~~  234 (345)
T cd08260         164 KPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE-----LGAVATVNASEVEDVAAAVRDLTG--GGA  234 (345)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH-----hCCCEEEccccchhHHHHHHHHhC--CCC
Confidence            5778999999999999999999864  9999999999887776643     33311111111 1111    1111  168


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+-.  ++     ....+....+.|+++|.++.-.
T Consensus       235 d~vi~~--~g-----~~~~~~~~~~~l~~~g~~i~~g  264 (345)
T cd08260         235 HVSVDA--LG-----IPETCRNSVASLRKRGRHVQVG  264 (345)
T ss_pred             CEEEEc--CC-----CHHHHHHHHHHhhcCCEEEEeC
Confidence            988843  22     1235667789999999988654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK07680 late competence protein ComER; Validated

Probab=92.30  E-value=0.86  Score=42.62  Aligned_cols=88  Identities=15%  Similarity=0.250  Sum_probs=53.8

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCC----cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTT----TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~g----a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      +|.+||+|.+|.+-..-..+  .|    ..|+.+|.+++..+..   ... .   ..+.+ ..|..++   ....|+||+
T Consensus         2 ~I~iIG~G~mG~ala~~L~~--~g~~~~~~v~v~~r~~~~~~~~---~~~-~---~g~~~-~~~~~~~---~~~aDiVil   68 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLE--SGAVKPSQLTITNRTPAKAYHI---KER-Y---PGIHV-AKTIEEV---ISQSDLIFI   68 (273)
T ss_pred             EEEEECccHHHHHHHHHHHH--CCCCCcceEEEECCCHHHHHHH---HHH-c---CCeEE-ECCHHHH---HHhCCEEEE
Confidence            69999999887654322222  23    4789999998655433   232 1   12332 2333332   236899998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      +.    +...-..+++.+...++++..++
T Consensus        69 av----~p~~~~~vl~~l~~~l~~~~~ii   93 (273)
T PRK07680         69 CV----KPLDIYPLLQKLAPHLTDEHCLV   93 (273)
T ss_pred             ec----CHHHHHHHHHHHHhhcCCCCEEE
Confidence            76    34455678888888888877544

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=92.27  E-value=0.54  Score=44.49  Aligned_cols=94  Identities=15%  Similarity=0.169  Sum_probs=57.5

Q ss_pred             CCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccCcCCCCccEEE
Q 021008          121 FPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVSSALKDYEVVF  198 (318)
Q Consensus       121 ~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~~~l~~fD~V~  198 (318)
                      ++.+|+..| +|++|..++.+|+.+  |++|+++.-+ +..+    .++. .|...-+.....+.. .+ .....+|+|+
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~-~~~~----~~~~-~g~~~~~~~~~~~~~~~l-~~~~~vd~vi  232 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKAW--GAHVTTTCST-DAIP----LVKS-LGADDVIDYNNEDFEEEL-TERGKFDVIL  232 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC--CCeEEEEeCc-chHH----HHHH-hCCceEEECCChhHHHHH-HhcCCCCEEE
Confidence            489999999 699999999999864  8898887743 3333    3333 343111111110111 11 1224689988


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -..  +    ..  .+....+.++++|+++.-.
T Consensus       233 ~~~--g----~~--~~~~~~~~l~~~G~~v~~g  257 (350)
T cd08248         233 DTV--G----GD--TEKWALKLLKKGGTYVTLV  257 (350)
T ss_pred             ECC--C----hH--HHHHHHHHhccCCEEEEec
Confidence            433  1    11  5677789999999998654

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.24  E-value=1.8  Score=43.46  Aligned_cols=102  Identities=24%  Similarity=0.283  Sum_probs=63.9

Q ss_pred             CCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHH---hhcCCCCC---------CCeEEEEcccccc
Q 021008          121 FPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSL---VSSDPDLS---------TRMFFHTTDIMNV  187 (318)
Q Consensus       121 ~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~---~~~~~gl~---------~ri~f~~gDa~~l  187 (318)
                      ...+|..||-|=.|+.. ..+|+   .|..|+|+||++..++.-++-   ... .++.         .+.+. +.|    
T Consensus         8 ~~~~I~ViGLGYVGLPlA~~fA~---~G~~ViG~DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~lra-Ttd----   78 (436)
T COG0677           8 MSATIGVIGLGYVGLPLAAAFAS---AGFKVIGVDINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKLRA-TTD----   78 (436)
T ss_pred             CceEEEEEccccccHHHHHHHHH---cCCceEeEeCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCceE-ecC----
Confidence            34899999999877754 34554   499999999999988864321   111 1111         11111 111    


Q ss_pred             CcCCCCccEEEeccccCC------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          188 SSALKDYEVVFLAALVGM------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 ~~~l~~fD~V~~aalvgm------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.+++..|++++.--.++      |..--....+.|++.|++|-.+++-+
T Consensus        79 ~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlES  128 (436)
T COG0677          79 PEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILES  128 (436)
T ss_pred             hhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEec
Confidence            123346787765542222      22344567788999999999999988

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=92.20  E-value=0.52  Score=44.64  Aligned_cols=98  Identities=10%  Similarity=0.103  Sum_probs=63.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc----ccccCcCCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD----IMNVSSALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD----a~~l~~~l~~  193 (318)
                      ..++.+|+..|+|++|..++.+|+..  |+. |++++.+++..+.+++     .|...-+....-+    +..+. ....
T Consensus       166 ~~~g~~vlI~g~g~vg~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~-----~ga~~v~~~~~~~~~~~i~~~~-~~~~  237 (345)
T cd08287         166 VRPGSTVVVVGDGAVGLCAVLAAKRL--GAERIIAMSRHEDRQALARE-----FGATDIVAERGEEAVARVRELT-GGVG  237 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH-----cCCceEecCCcccHHHHHHHhc-CCCC
Confidence            36788999999999999999999864  874 9999998866666554     3321111111101    11121 1225


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+++-..  +     ....+....+.++++|+++.-.
T Consensus       238 ~d~il~~~--g-----~~~~~~~~~~~l~~~g~~v~~g  268 (345)
T cd08287         238 ADAVLECV--G-----TQESMEQAIAIARPGGRVGYVG  268 (345)
T ss_pred             CCEEEECC--C-----CHHHHHHHHHhhccCCEEEEec
Confidence            88887432  2     1346778889999999998755

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=92.18  E-value=0.93  Score=43.66  Aligned_cols=98  Identities=18%  Similarity=0.189  Sum_probs=63.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccC--cCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVS--SALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~--~~l~~fD  195 (318)
                      .++.+||..|+|++|..++.+|+.+  |+. |++++.+++..+.++++     |...-+.....+.. .+.  .....||
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~--G~~~vi~~~~s~~~~~~~~~~-----g~~~v~~~~~~~~~~~l~~~~~~~~~d  258 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAF--GASPIIAVDVRDEKLAKAKEL-----GATHTVNAAKEDAVAAIREITGGRGVD  258 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHh-----CCceEecCCcccHHHHHHHHhCCCCCC
Confidence            5778999999999999999999864  777 99999998877766442     32110111111110 010  1123699


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+-..  +    .. ..+.++.+.|+++|+++.-.
T Consensus       259 ~vld~v--g----~~-~~~~~~~~~l~~~G~~v~~g  287 (367)
T cd08263         259 VVVEAL--G----KP-ETFKLALDVVRDGGRAVVVG  287 (367)
T ss_pred             EEEEeC--C----CH-HHHHHHHHHHhcCCEEEEEc
Confidence            988432  1    11 35677889999999988654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.17  E-value=1.3  Score=41.43  Aligned_cols=97  Identities=13%  Similarity=0.153  Sum_probs=65.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCe-EEEEccccccCcC-CC-CccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRM-FFHTTDIMNVSSA-LK-DYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri-~f~~gDa~~l~~~-l~-~fD~  196 (318)
                      .+++.+|||||-++|+|-..|-+   .-..|.+||..-..+.+.-+       -+.|+ .+...|+..+..+ .. ..|+
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~---gAk~VyavDVG~~Ql~~kLR-------~d~rV~~~E~tN~r~l~~~~~~~~~d~  147 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQR---GAKHVYAVDVGYGQLHWKLR-------NDPRVIVLERTNVRYLTPEDFTEKPDL  147 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHc---CCcEEEEEEccCCccCHhHh-------cCCcEEEEecCChhhCCHHHcccCCCe
Confidence            78999999999999999765543   23579999998877666422       22444 3444555554321 11 4567


Q ss_pred             EEec-cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLA-ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~a-alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +..+ ++.     .-..+|-.+...++||+-++..-
T Consensus       148 ~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         148 IVIDVSFI-----SLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             EEEEeehh-----hHHHHHHHHHHhcCCCceEEEEe
Confidence            7655 333     33568899999999999877643

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.15  E-value=0.73  Score=41.18  Aligned_cols=76  Identities=11%  Similarity=0.051  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----------c
Q 021008          121 FPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----------S  189 (318)
Q Consensus       121 ~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----------~  189 (318)
                      .++++|.+|+ |.+|........+  .|++|+.+|.+++..+.+.+.+..   .+.++.++..|+.+..          .
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~--~G~~vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQ--KGAKLALIDLNQEKLEEAVAECGA---LGTEVRGYAANVTDEEDVEATFAQIAE   78 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            5689999997 5555554332222  489999999999776666555544   3467888999987631          1


Q ss_pred             CCCCccEEEecc
Q 021008          190 ALKDYEVVFLAA  201 (318)
Q Consensus       190 ~l~~fD~V~~aa  201 (318)
                      ..+..|+|+..+
T Consensus        79 ~~~~id~vi~~a   90 (253)
T PRK08217         79 DFGQLNGLINNA   90 (253)
T ss_pred             HcCCCCEEEECC
Confidence            124679877544

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=92.14  E-value=1.1  Score=42.91  Aligned_cols=102  Identities=19%  Similarity=0.257  Sum_probs=58.3

Q ss_pred             EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH-HHHHHHHHhhcCCCCCCCeEEEE-ccccccCcCCCCccEEEeccc
Q 021008          125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS-ANSKALSLVSSDPDLSTRMFFHT-TDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~-ai~~Ar~~~~~~~gl~~ri~f~~-gDa~~l~~~l~~fD~V~~aal  202 (318)
                      |..||+|..|.+..+......--..++.+|++++ +...+..+-.....+ ...++.. +|.    .++...|+|++.+-
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-~~~~i~~~~~~----~~l~~aDiVIitag   75 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-ATGTIVRGGDY----ADAADADIVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-CCCeEEECCCH----HHhCCCCEEEEcCC
Confidence            4679999888776654433211257999999886 334444443331112 2344443 432    24558999998876


Q ss_pred             c----CCChhH----HHHHHHHHHHhcc---CCeEEEEEc
Q 021008          203 V----GMDKDE----KIRVIDHLAKYMA---PGALLMLRS  231 (318)
Q Consensus       203 v----gm~~~~----k~~vl~~l~r~Lk---pGg~lv~r~  231 (318)
                      +    +|+..+    -..++.++.+.++   |.|.+++-+
T Consensus        76 ~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          76 APRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            5    343222    3445555555444   778776655

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=92.12  E-value=0.055  Score=45.53  Aligned_cols=59  Identities=17%  Similarity=0.281  Sum_probs=38.9

Q ss_pred             CeEEEEccccccCcCC-CCccEEEeccccCC-Chh-HHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          176 RMFFHTTDIMNVSSAL-KDYEVVFLAALVGM-DKD-EKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       176 ri~f~~gDa~~l~~~l-~~fD~V~~aalvgm-~~~-~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ++++..||+.+....+ ..||++|++++-+- +++ =-.+++..|++.++|||+++.-+..|
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~   93 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSAG   93 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BH
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechH
Confidence            4577889998744443 48999999987632 111 12679999999999999998877544

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>cd05281 TDH Threonine dehydrogenase

Probab=92.08  E-value=0.56  Score=44.56  Aligned_cols=97  Identities=18%  Similarity=0.187  Sum_probs=62.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc---cccCcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI---MNVSSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa---~~l~~~l~~fD  195 (318)
                      .++.+||..|+|++|..++.+|+.+  |. .|++++-+++..+.++++     |...-+.....+.   .++. ..+.+|
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~-~~~~vd  233 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAA--GASLVIASDPNPYRLELAKKM-----GADVVINPREEDVVEVKSVT-DGTGVD  233 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHh-----CcceeeCcccccHHHHHHHc-CCCCCC
Confidence            5788999999998899999999864  77 788888888777666543     3211111111111   1121 123689


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+-...       .......+.+.|+++|+++.-.
T Consensus       234 ~vld~~g-------~~~~~~~~~~~l~~~G~~v~~g  262 (341)
T cd05281         234 VVLEMSG-------NPKAIEQGLKALTPGGRVSILG  262 (341)
T ss_pred             EEEECCC-------CHHHHHHHHHHhccCCEEEEEc
Confidence            9885431       1235667788999999987654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=92.06  E-value=0.97  Score=42.49  Aligned_cols=108  Identities=16%  Similarity=0.197  Sum_probs=68.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC--CCCCeEEEEccccc-cCcCC--CCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD--LSTRMFFHTTDIMN-VSSAL--KDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g--l~~ri~f~~gDa~~-l~~~l--~~f  194 (318)
                      .....|+.+||| +-.-+..+..  .++.++.-||. |+.++.-++++.+ .|  ...+.+++..|..+ +...+  ..|
T Consensus        80 ~g~~qvV~LGaG-lDTr~~Rl~~--~~~~~~~EvD~-P~v~~~K~~~l~~-~~~~~~~~~~~v~~Dl~~~w~~~L~~~gf  154 (260)
T TIGR00027        80 AGIRQVVILGAG-LDTRAYRLPW--PDGTRVFEVDQ-PAVLAFKEKVLAE-LGAEPPAHRRAVPVDLRQDWPAALAAAGF  154 (260)
T ss_pred             cCCcEEEEeCCc-cccHHHhcCC--CCCCeEEECCC-hHHHHHHHHHHHH-cCCCCCCceEEeccCchhhHHHHHHhCCC
Confidence            345789999998 6544444421  23455555555 4466666667665 33  35788999999862 11111  245


Q ss_pred             c----EEEe-cccc-CCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          195 E----VVFL-AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       195 D----~V~~-aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |    .+|+ ..++ =++.+.-.++++.+.+...||+.+++...
T Consensus       155 d~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~  198 (260)
T TIGR00027       155 DPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV  198 (260)
T ss_pred             CCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence            5    4444 3332 22667778899999999889999998763

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.97  E-value=0.9  Score=39.94  Aligned_cols=116  Identities=21%  Similarity=0.256  Sum_probs=72.8

Q ss_pred             CCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHH-hCCCC-cEEEEEeCChHHHHHHHHHhhcCCCC
Q 021008           96 IFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAI-NHLTT-TCFDNYDIDPSANSKALSLVSSDPDL  173 (318)
Q Consensus        96 ~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~-~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl  173 (318)
                      .-||-..--..++.-...+.   ..+..+.+|+|||-+ -  +.+|. ++  | -.-+|++.+|-.+..+|-.+-+ .|.
T Consensus        50 cvPYVpAtteQv~nVLSll~---~n~~GklvDlGSGDG-R--iVlaaar~--g~~~a~GvELNpwLVaysrl~a~R-~g~  120 (199)
T KOG4058|consen   50 CVPYVPATTEQVENVLSLLR---GNPKGKLVDLGSGDG-R--IVLAAARC--GLRPAVGVELNPWLVAYSRLHAWR-AGC  120 (199)
T ss_pred             cccccCccHHHHHHHHHHcc---CCCCCcEEeccCCCc-e--eehhhhhh--CCCcCCceeccHHHHHHHHHHHHH-Hhc
Confidence            34655544444444444332   245579999999953 2  33332 22  4 4568999999999999887777 899


Q ss_pred             CCCeEEEEccccccCcCCCCcc--EEEec-cccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          174 STRMFFHTTDIMNVSSALKDYE--VVFLA-ALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       174 ~~ri~f~~gDa~~l~~~l~~fD--~V~~a-alvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +++.+|..-|....  ++..|.  +||.+ ++.+ +.++|      +..-|+.+..++-
T Consensus       121 ~k~trf~RkdlwK~--dl~dy~~vviFgaes~m~-dLe~K------L~~E~p~nt~vva  170 (199)
T KOG4058|consen  121 AKSTRFRRKDLWKV--DLRDYRNVVIFGAESVMP-DLEDK------LRTELPANTRVVA  170 (199)
T ss_pred             ccchhhhhhhhhhc--cccccceEEEeehHHHHh-hhHHH------HHhhCcCCCeEEE
Confidence            99999999988764  556565  33422 2211 22333      3446777776653

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=91.96  E-value=0.79  Score=41.27  Aligned_cols=34  Identities=24%  Similarity=0.207  Sum_probs=24.4

Q ss_pred             CCCCEEEEEccCCChHHHH-HHHHhCCCCc-EEEEEeCC
Q 021008          120 RFPTKIAFIGSGPLPLTSI-VLAINHLTTT-CFDNYDID  156 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai-~LA~~~~~ga-~V~gvDid  156 (318)
                      -...+|+.||+|++|-... .|++   .|. +++-+|.|
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~---~Gv~~i~lvD~d   54 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAG---AGVGTIVIVDDD   54 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHH---cCCCeEEEecCC
Confidence            3578999999997655433 3443   465 89999988

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=91.94  E-value=0.42  Score=46.05  Aligned_cols=97  Identities=18%  Similarity=0.132  Sum_probs=63.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~f  194 (318)
                      .++.+||..|+|++|..++.+|+.  .|++ |++++.+++..+.+++     .|...-+.....+.    ..+. ....+
T Consensus       181 ~~g~~vLI~g~g~vG~a~i~lak~--~G~~~Vi~~~~~~~~~~~~~~-----~g~~~vv~~~~~~~~~~l~~~~-~~~~v  252 (363)
T cd08279         181 RPGDTVAVIGCGGVGLNAIQGARI--AGASRIIAVDPVPEKLELARR-----FGATHTVNASEDDAVEAVRDLT-DGRGA  252 (363)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHH-----hCCeEEeCCCCccHHHHHHHHc-CCCCC
Confidence            678899999999999999999986  4885 9999999887766643     33311111111111    1111 12369


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+++-..  +     ....+....+.|+++|+++.-.
T Consensus       253 d~vld~~--~-----~~~~~~~~~~~l~~~G~~v~~g  282 (363)
T cd08279         253 DYAFEAV--G-----RAATIRQALAMTRKGGTAVVVG  282 (363)
T ss_pred             CEEEEcC--C-----ChHHHHHHHHHhhcCCeEEEEe
Confidence            9887433  1     1245677889999999988654

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=91.93  E-value=1.2  Score=44.92  Aligned_cols=76  Identities=28%  Similarity=0.314  Sum_probs=50.7

Q ss_pred             CEEEEEccCCChHHHHHHHH-----hCCCCcEEEEEeCC-hHHHHH----HHHHhhcCCCCCCCeEEEEccccccCcCCC
Q 021008          123 TKIAFIGSGPLPLTSIVLAI-----NHLTTTCFDNYDID-PSANSK----ALSLVSSDPDLSTRMFFHTTDIMNVSSALK  192 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~-----~~~~ga~V~gvDid-~~ai~~----Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~  192 (318)
                      .||.+||.|.. +|...+-.     .-+++.+|+-+||| ++.++.    +++.++. .|.  .+++...  .|....+.
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~-~~~--~~~v~~t--~d~~~al~   74 (419)
T cd05296           1 MKLTIIGGGSS-YTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKK-AGL--PIKVHLT--TDRREALE   74 (419)
T ss_pred             CEEEEECCchH-hHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHh-hCC--CeEEEEe--CCHHHHhC
Confidence            38999999974 77544332     12467999999999 787755    6666666 443  4555432  23334556


Q ss_pred             CccEEEeccccC
Q 021008          193 DYEVVFLAALVG  204 (318)
Q Consensus       193 ~fD~V~~aalvg  204 (318)
                      +-|+|+++.-+|
T Consensus        75 gadfVi~~~~vg   86 (419)
T cd05296          75 GADFVFTQIRVG   86 (419)
T ss_pred             CCCEEEEEEeeC
Confidence            789999888774

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=91.90  E-value=0.7  Score=44.84  Aligned_cols=99  Identities=18%  Similarity=0.200  Sum_probs=64.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~f  194 (318)
                      .++.+|+..|+|++|..++.+|+.  .|+ .|+++|.+++..+.++++     |. .-+.+...+.    .++. . ..+
T Consensus       175 ~~g~~vlI~g~g~vg~~~~~~a~~--~G~~~vi~~~~~~~~~~~~~~~-----g~-~~v~~~~~~~~~~i~~~~-~-~~~  244 (375)
T cd08282         175 QPGDTVAVFGAGPVGLMAAYSAIL--RGASRVYVVDHVPERLDLAESI-----GA-IPIDFSDGDPVEQILGLE-P-GGV  244 (375)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHc-----CC-eEeccCcccHHHHHHHhh-C-CCC
Confidence            678999999999999999999986  486 799999998887777653     22 1111111111    1121 1 368


Q ss_pred             cEEEeccccCCCh------hHHHHHHHHHHHhccCCeEEEEE
Q 021008          195 EVVFLAALVGMDK------DEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       195 D~V~~aalvgm~~------~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      |+|+-..  +-..      ..+...+.+..+.++++|+++.-
T Consensus       245 d~v~d~~--g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  284 (375)
T cd08282         245 DRAVDCV--GYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV  284 (375)
T ss_pred             CEEEECC--CCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence            9887432  1010      12345678888999999998654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=91.89  E-value=0.51  Score=45.97  Aligned_cols=45  Identities=16%  Similarity=0.042  Sum_probs=38.9

Q ss_pred             CCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHH
Q 021008          120 RFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSL  166 (318)
Q Consensus       120 ~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~  166 (318)
                      .++.+|+..|+ |++|..++.+|+.  .|+.++.++.+++..+.++++
T Consensus       192 ~~g~~vlV~ga~g~iG~a~~~lak~--~G~~vv~~~~s~~~~~~~~~~  237 (393)
T cd08246         192 KPGDNVLIWGASGGLGSMAIQLARA--AGANPVAVVSSEEKAEYCRAL  237 (393)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHc
Confidence            67889999997 9999999999986  499999999999888888763

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=91.88  E-value=0.44  Score=48.29  Aligned_cols=77  Identities=25%  Similarity=0.254  Sum_probs=53.0

Q ss_pred             CEEEEEccCCChHHHHHH---HHh--CCCCcEEEEEeCChHHHHH----HHHHhhcCCCCCCCeEEEEccccccCcCCCC
Q 021008          123 TKIAFIGSGPLPLTSIVL---AIN--HLTTTCFDNYDIDPSANSK----ALSLVSSDPDLSTRMFFHTTDIMNVSSALKD  193 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~L---A~~--~~~ga~V~gvDid~~ai~~----Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~  193 (318)
                      .||.+||.|.. +|...+   ++.  -+++.+|+=+|||++.++.    |++.+++ .|.  .+++...  +|....+.+
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~-~g~--~~~v~~T--tdr~eAl~g   74 (437)
T cd05298           1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKE-NYP--EIKFVYT--TDPEEAFTD   74 (437)
T ss_pred             CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHh-hCC--CeEEEEE--CCHHHHhCC
Confidence            48999999964 775432   222  2578999999999988887    4555555 454  4444332  445556678


Q ss_pred             ccEEEeccccCC
Q 021008          194 YEVVFLAALVGM  205 (318)
Q Consensus       194 fD~V~~aalvgm  205 (318)
                      -|+|+++.-||-
T Consensus        75 ADfVi~~irvGg   86 (437)
T cd05298          75 ADFVFAQIRVGG   86 (437)
T ss_pred             CCEEEEEeeeCC
Confidence            999999888863

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=91.79  E-value=0.85  Score=42.73  Aligned_cols=91  Identities=12%  Similarity=0.067  Sum_probs=57.9

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE--ccccccCcCCCCcc
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT--TDIMNVSSALKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~--gDa~~l~~~l~~fD  195 (318)
                      ..++.+|+.+|+ |++|..++.+|+.+  |++|++++.+    +.+    +. .|...-+....  ..+..+.   ..+|
T Consensus       160 ~~~g~~vlI~g~~g~vg~~~~~~a~~~--G~~v~~~~~~----~~~----~~-~g~~~~~~~~~~~~~l~~~~---~~~d  225 (325)
T cd08264         160 LGPGETVVVFGASGNTGIFAVQLAKMM--GAEVIAVSRK----DWL----KE-FGADEVVDYDEVEEKVKEIT---KMAD  225 (325)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHc--CCeEEEEeHH----HHH----HH-hCCCeeecchHHHHHHHHHh---CCCC
Confidence            367899999997 99999999999864  8899888632    222    23 33311111100  0111221   4689


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+-..  +    .  ..+....+.|+++|+++.-.
T Consensus       226 ~vl~~~--g----~--~~~~~~~~~l~~~g~~v~~g  253 (325)
T cd08264         226 VVINSL--G----S--SFWDLSLSVLGRGGRLVTFG  253 (325)
T ss_pred             EEEECC--C----H--HHHHHHHHhhccCCEEEEEe
Confidence            887432  1    2  36778889999999998654

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=91.73  E-value=1.4  Score=40.09  Aligned_cols=94  Identities=12%  Similarity=0.034  Sum_probs=59.3

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCcc
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD  195 (318)
                      ..++.+|+..|+ |++|..++.+|+.  .|++|+.++.++ ..+.++    . .|..   .++...-.+..  .....+|
T Consensus       142 ~~~~~~vlv~g~~g~~g~~~~~~a~~--~g~~v~~~~~~~-~~~~~~----~-~g~~---~~~~~~~~~~~~~~~~~~~d  210 (309)
T cd05289         142 LKAGQTVLIHGAAGGVGSFAVQLAKA--RGARVIATASAA-NADFLR----S-LGAD---EVIDYTKGDFERAAAPGGVD  210 (309)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHH--cCCEEEEEecch-hHHHHH----H-cCCC---EEEeCCCCchhhccCCCCce
Confidence            367899999995 8899999999986  489999988766 444443    2 3331   11111111111  1223688


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +++-..  +    .  .......+.++++|.++.-.
T Consensus       211 ~v~~~~--~----~--~~~~~~~~~l~~~g~~v~~g  238 (309)
T cd05289         211 AVLDTV--G----G--ETLARSLALVKPGGRLVSIA  238 (309)
T ss_pred             EEEECC--c----h--HHHHHHHHHHhcCcEEEEEc
Confidence            887432  1    1  15667788999999987654

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=91.73  E-value=0.34  Score=49.12  Aligned_cols=62  Identities=13%  Similarity=0.126  Sum_probs=50.7

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS  188 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~  188 (318)
                      .-||+||+|+ |+-+++.++.  .+-.||+++.=..+.+.||+...+ -|.+++|+++.---+++.
T Consensus        68 v~vLdigtGT-GLLSmMAvra--gaD~vtA~EvfkPM~d~arkI~~k-ng~SdkI~vInkrStev~  129 (636)
T KOG1501|consen   68 VFVLDIGTGT-GLLSMMAVRA--GADSVTACEVFKPMVDLARKIMHK-NGMSDKINVINKRSTEVK  129 (636)
T ss_pred             EEEEEccCCc-cHHHHHHHHh--cCCeEEeehhhchHHHHHHHHHhc-CCCccceeeeccccceee
Confidence            4789999995 7777766653  244799999999999999999999 999999999876665553

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=91.70  E-value=0.97  Score=42.50  Aligned_cols=94  Identities=11%  Similarity=0.141  Sum_probs=63.6

Q ss_pred             CCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++.+|+..|+ |++|..++.+|+.  .|++|+.++.+++..+.++++ .. .=+..+ .+ ..++..    ++.+|+++
T Consensus       161 ~~~~~vlI~g~~g~~g~~~~~la~~--~g~~vi~~~~~~~~~~~~~~~-~~-~~~~~~-~~-~~~v~~----~~~~d~~l  230 (334)
T PRK13771        161 KKGETVLVTGAGGGVGIHAIQVAKA--LGAKVIAVTSSESKAKIVSKY-AD-YVIVGS-KF-SEEVKK----IGGADIVI  230 (334)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHH-HH-HhcCch-hH-HHHHHh----cCCCcEEE
Confidence            67889999999 8899999999986  499999999999888888766 21 101111 11 011111    23588887


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -.  ++    .  ..+..+.+.+++||+++.-.
T Consensus       231 d~--~g----~--~~~~~~~~~l~~~G~~v~~g  255 (334)
T PRK13771        231 ET--VG----T--PTLEESLRSLNMGGKIIQIG  255 (334)
T ss_pred             Ec--CC----h--HHHHHHHHHHhcCCEEEEEe
Confidence            33  22    1  24667788999999987654

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=91.69  E-value=1.9  Score=41.33  Aligned_cols=109  Identities=14%  Similarity=0.229  Sum_probs=61.4

Q ss_pred             CCCEEEEEccCCChHHHHH-HHHhCCCCc-EEEEEeCCh-------------------HHHHHHHHHhhcCCCCCCCeEE
Q 021008          121 FPTKIAFIGSGPLPLTSIV-LAINHLTTT-CFDNYDIDP-------------------SANSKALSLVSSDPDLSTRMFF  179 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~-LA~~~~~ga-~V~gvDid~-------------------~ai~~Ar~~~~~~~gl~~ri~f  179 (318)
                      ...+||.||+|++|..... ||.   .|. +|+-+|-|.                   ...+.+.+.+++ ..-.-+++.
T Consensus        18 ~~s~VLIvG~gGLG~EiaKnLal---aGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~e-LNp~V~V~~   93 (286)
T cd01491          18 QKSNVLISGLGGLGVEIAKNLIL---AGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAE-LNPYVPVTV   93 (286)
T ss_pred             hcCcEEEEcCCHHHHHHHHHHHH---cCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHH-HCCCCEEEE
Confidence            5689999999977665432 332   454 588888663                   122333334444 333345555


Q ss_pred             EEccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCccccccc
Q 021008          180 HTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYP  241 (318)
Q Consensus       180 ~~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP  241 (318)
                      +.+...+  ..+.+||+|+....   +.+.+. .+.++.+.  .+-.++.-...|+.+..|.
T Consensus        94 ~~~~~~~--~~l~~fdvVV~~~~---~~~~~~-~in~~c~~--~~ipfI~a~~~G~~G~vf~  147 (286)
T cd01491          94 STGPLTT--DELLKFQVVVLTDA---SLEDQL-KINEFCHS--PGIKFISADTRGLFGSIFC  147 (286)
T ss_pred             EeccCCH--HHHhcCCEEEEecC---CHHHHH-HHHHHHHH--cCCEEEEEeccccEEEEEe
Confidence            5554221  23458998886542   333333 45555443  5556777777787765554

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=91.66  E-value=0.88  Score=42.56  Aligned_cols=96  Identities=10%  Similarity=0.086  Sum_probs=63.0

Q ss_pred             CCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCCc
Q 021008          120 RFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~f  194 (318)
                      .++.+||..| +|++|..++.+|+.  .|+.|++++.+++..+.+++.    .|...-+.....+.    ..+. . ..+
T Consensus       144 ~~~~~vlI~g~~g~ig~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~v~~~~-~-~~~  215 (329)
T cd05288         144 KPGETVVVSAAAGAVGSVVGQIAKL--LGARVVGIAGSDEKCRWLVEE----LGFDAAINYKTPDLAEALKEAA-P-DGI  215 (329)
T ss_pred             CCCCEEEEecCcchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhh----cCCceEEecCChhHHHHHHHhc-c-CCc
Confidence            5678999999 68899999999986  489999999999877766542    22211111111111    1121 1 368


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+++-..  +      ...+....+.++++|+++.-.
T Consensus       216 d~vi~~~--g------~~~~~~~~~~l~~~G~~v~~g  244 (329)
T cd05288         216 DVYFDNV--G------GEILDAALTLLNKGGRIALCG  244 (329)
T ss_pred             eEEEEcc--h------HHHHHHHHHhcCCCceEEEEe
Confidence            9887332  2      136777789999999987654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=91.59  E-value=0.51  Score=44.93  Aligned_cols=95  Identities=17%  Similarity=0.115  Sum_probs=62.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc----cCcCCC-C
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN----VSSALK-D  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~----l~~~l~-~  193 (318)
                      .++++|+..|+|++|..++.+|+..  |+ .|+.++.+++..+.+++     .|..   .++...-.+    +..... .
T Consensus       174 ~~~~~vlI~g~g~vg~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~-----~g~~---~~~~~~~~~~~~~~~~~~~~~  243 (350)
T cd08240         174 VADEPVVIIGAGGLGLMALALLKAL--GPANIIVVDIDEAKLEAAKA-----AGAD---VVVNGSDPDAAKRIIKAAGGG  243 (350)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH-----hCCc---EEecCCCccHHHHHHHHhCCC
Confidence            4678999999999999999999864  88 79999998887776644     3331   111111001    110111 5


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+|+-..  |     ....+....+.|+++|+++.-.
T Consensus       244 ~d~vid~~--g-----~~~~~~~~~~~l~~~g~~v~~g  274 (350)
T cd08240         244 VDAVIDFV--N-----NSATASLAFDILAKGGKLVLVG  274 (350)
T ss_pred             CcEEEECC--C-----CHHHHHHHHHHhhcCCeEEEEC
Confidence            88888432  1     1235777889999999998654

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=91.57  E-value=1.1  Score=42.32  Aligned_cols=98  Identities=14%  Similarity=0.167  Sum_probs=54.7

Q ss_pred             CEEEEEccCCChHHHHHHHHhC--CCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          123 TKIAFIGSGPLPLTSIVLAINH--LTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~--~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      .+|.+||+|.+|.+...-..+.  .+..+|..++.+++.  ..+++... .+   .+. ...|..++   ....|+|+++
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~--~~~~l~~~-~~---~~~-~~~~~~e~---~~~aDvVila   71 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNE--HFNQLYDK-YP---TVE-LADNEAEI---FTKCDHSFIC   71 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHH--HHHHHHHH-cC---CeE-EeCCHHHH---HhhCCEEEEe
Confidence            3799999998876543322221  112579999987642  22333222 11   122 12333332   2368999977


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                      .    +...-..++.++...+++|..++. -..|.
T Consensus        72 v----pp~~~~~vl~~l~~~l~~~~~ivS-~~aGi  101 (277)
T PRK06928         72 V----PPLAVLPLLKDCAPVLTPDRHVVS-IAAGV  101 (277)
T ss_pred             c----CHHHHHHHHHHHHhhcCCCCEEEE-ECCCC
Confidence            5    334556788888888887765433 33443

>PLN02602 lactate dehydrogenase

Probab=91.57  E-value=1.9  Score=42.51  Aligned_cols=104  Identities=15%  Similarity=0.277  Sum_probs=61.4

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH-HHHHHHHhhcCCCCCCCeEEEE-ccccccCcCCCCccEEEec
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA-NSKALSLVSSDPDLSTRMFFHT-TDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a-i~~Ar~~~~~~~gl~~ri~f~~-gDa~~l~~~l~~fD~V~~a  200 (318)
                      .||..||+|..|.+..+..........+.-+|++++. -..+..+... ..+-..+++.. +|-.    +++..|+|++.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~-~~~~~~~~i~~~~dy~----~~~daDiVVit  112 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHA-AAFLPRTKILASTDYA----VTAGSDLCIVT  112 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhh-hhcCCCCEEEeCCCHH----HhCCCCEEEEC
Confidence            7999999999888876655432234579999998853 3455555443 22323345543 3422    34589999887


Q ss_pred             ccc----CCChh----HHHHHHHHHHHhc---cCCeEEEEEc
Q 021008          201 ALV----GMDKD----EKIRVIDHLAKYM---APGALLMLRS  231 (318)
Q Consensus       201 alv----gm~~~----~k~~vl~~l~r~L---kpGg~lv~r~  231 (318)
                      +-.    ||+..    .-.+++.++.+.+   .|.|.+++-+
T Consensus       113 AG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        113 AGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            655    44321    2234455555444   4677766644

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=91.57  E-value=0.26  Score=49.94  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=29.8

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP  157 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~  157 (318)
                      .+++|+.||+||.|+++...+++  .|..|+-+|..+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~  174 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHP  174 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            56899999999999999877765  488999998765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=91.55  E-value=1.8  Score=42.10  Aligned_cols=107  Identities=18%  Similarity=0.262  Sum_probs=61.1

Q ss_pred             CCCEEEEEcc-CCChHHHHHHHHhCCCCc-----EEEEEeCChH---HHHHHHHHhhcCCCCCCCeEEEEccccccCcCC
Q 021008          121 FPTKIAFIGS-GPLPLTSIVLAINHLTTT-----CFDNYDIDPS---ANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL  191 (318)
Q Consensus       121 ~~~rVL~IGs-Gplp~tai~LA~~~~~ga-----~V~gvDid~~---ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l  191 (318)
                      .|-||..||+ |..|.+..........-.     .++-+|+.+.   +...|..+..........+++..+|-    .++
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~----~~~   77 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPE----EAF   77 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChH----HHh
Confidence            5789999998 998888655443211112     7999999642   45566555544112223455543333    344


Q ss_pred             CCccEEEecccc----CCChhH----HHHHHH----HHHHhccCCeEEEEEc
Q 021008          192 KDYEVVFLAALV----GMDKDE----KIRVID----HLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalv----gm~~~~----k~~vl~----~l~r~LkpGg~lv~r~  231 (318)
                      ...|+|++.+-+    ||+..+    -.++++    .+.+.-.|.|++++-+
T Consensus        78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  129 (323)
T TIGR01759        78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG  129 (323)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            578988877655    444322    233444    4444333478777765

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=91.55  E-value=0.54  Score=44.37  Aligned_cols=97  Identities=14%  Similarity=0.101  Sum_probs=62.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE---ccccccCcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT---TDIMNVSSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~---gDa~~l~~~l~~fD  195 (318)
                      .++++||..|+|++|..++.+|+..  | .+|++++-+++..+..++     .|...-+....   .....+. ....+|
T Consensus       166 ~~~~~vlI~g~~~vg~~~~~~a~~~--g~~~v~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~i~~~~-~~~~~d  237 (340)
T cd05284         166 DPGSTVVVIGVGGLGHIAVQILRAL--TPATVIAVDRSEEALKLAER-----LGADHVLNASDDVVEEVRELT-GGRGAD  237 (340)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHh--CCCcEEEEeCCHHHHHHHHH-----hCCcEEEcCCccHHHHHHHHh-CCCCCC
Confidence            5689999999999999999999864  6 899999998876665543     33311111110   0011121 113699


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+-..  +    . ...++...+.|+++|+++.-.
T Consensus       238 vvld~~--g----~-~~~~~~~~~~l~~~g~~i~~g  266 (340)
T cd05284         238 AVIDFV--G----S-DETLALAAKLLAKGGRYVIVG  266 (340)
T ss_pred             EEEEcC--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence            888543  1    1 235777789999999998654

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=91.46  E-value=0.5  Score=43.15  Aligned_cols=94  Identities=11%  Similarity=0.076  Sum_probs=61.9

Q ss_pred             CCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc--cc----cccCcCCC
Q 021008          120 RFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT--DI----MNVSSALK  192 (318)
Q Consensus       120 ~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g--Da----~~l~~~l~  192 (318)
                      .++.+||..| +|++|..++.+|+.  .|+.|++++.+++..+.+++     .|. +. .+...  +.    ..+. ...
T Consensus       135 ~~g~~vlI~g~~g~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~-----~g~-~~-~~~~~~~~~~~~~~~~~-~~~  204 (320)
T cd05286         135 KPGDTVLVHAAAGGVGLLLTQWAKA--LGATVIGTVSSEEKAELARA-----AGA-DH-VINYRDEDFVERVREIT-GGR  204 (320)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH-----CCC-CE-EEeCCchhHHHHHHHHc-CCC
Confidence            5789999999 68899999999986  48999999999877666543     333 11 11111  11    1111 123


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+|+-..  +    .  ..+....+.|+++|+++.-.
T Consensus       205 ~~d~vl~~~--~----~--~~~~~~~~~l~~~g~~v~~g  235 (320)
T cd05286         205 GVDVVYDGV--G----K--DTFEGSLDSLRPRGTLVSFG  235 (320)
T ss_pred             CeeEEEECC--C----c--HhHHHHHHhhccCcEEEEEe
Confidence            689888432  1    1  24566778999999987654

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=91.43  E-value=2.5  Score=38.88  Aligned_cols=116  Identities=10%  Similarity=0.154  Sum_probs=74.6

Q ss_pred             HhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc
Q 021008          105 KLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI  184 (318)
Q Consensus       105 ~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa  184 (318)
                      +|...-...|...-..++++||-+|.- -|.|.-.++.- -+...|.+|+.++.....=-.++++    ..+|-=+.+||
T Consensus        60 KLaAaIl~Gl~~~pi~~g~~VLYLGAa-sGTTvSHVSDI-v~~G~iYaVEfs~R~~reLl~~a~~----R~Ni~PIL~DA  133 (231)
T COG1889          60 KLAAAILKGLKNFPIKEGSKVLYLGAA-SGTTVSHVSDI-VGEGRIYAVEFSPRPMRELLDVAEK----RPNIIPILEDA  133 (231)
T ss_pred             HHHHHHHcCcccCCcCCCCEEEEeecc-CCCcHhHHHhc-cCCCcEEEEEecchhHHHHHHHHHh----CCCceeeeccc
Confidence            444444444433334889999999996 57777777753 3468899999999665444333333    36677788898


Q ss_pred             cccC---cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          185 MNVS---SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       185 ~~l~---~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ..-.   .-....|+||.+--   ++.+-.=+..+....||+||.+++
T Consensus       134 ~~P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         134 RKPEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             CCcHHhhhhcccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEE
Confidence            7521   11236799997752   223333455667888999995544

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=91.40  E-value=0.39  Score=53.09  Aligned_cols=35  Identities=23%  Similarity=0.224  Sum_probs=28.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDID  156 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid  156 (318)
                      ..++||+.||+||.|+++...+.+  .|..||-+|-.
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~  338 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAF  338 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeC
Confidence            457999999999999998665554  48889988864

>PRK12939 short chain dehydrogenase; Provisional

Probab=91.39  E-value=2.8  Score=37.42  Aligned_cols=76  Identities=13%  Similarity=0.035  Sum_probs=48.3

Q ss_pred             CCCEEEEEccC-CChHHHHHHHHhCC-CCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc---------
Q 021008          121 FPTKIAFIGSG-PLPLTSIVLAINHL-TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS---------  189 (318)
Q Consensus       121 ~~~rVL~IGsG-plp~tai~LA~~~~-~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~---------  189 (318)
                      .+++|+..|++ .+|..   +|+.+. .|++|+.++.+++..+...+..+.   .+.++.++.+|+.+...         
T Consensus         6 ~~~~vlItGa~g~iG~~---la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~   79 (250)
T PRK12939          6 AGKRALVTGAARGLGAA---FAEALAEAGATVAFNDGLAAEARELAAALEA---AGGRAHAIAADLADPASVQRFFDAAA   79 (250)
T ss_pred             CCCEEEEeCCCChHHHH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            46899999974 33333   333221 489999999998766655444443   24679999999986321         


Q ss_pred             -CCCCccEEEeccc
Q 021008          190 -ALKDYEVVFLAAL  202 (318)
Q Consensus       190 -~l~~fD~V~~aal  202 (318)
                       ..+..|+|+..+.
T Consensus        80 ~~~~~id~vi~~ag   93 (250)
T PRK12939         80 AALGGLDGLVNNAG   93 (250)
T ss_pred             HHcCCCCEEEECCC
Confidence             1146898876543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=91.38  E-value=0.72  Score=38.73  Aligned_cols=74  Identities=7%  Similarity=-0.005  Sum_probs=42.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+++|+.||+|.+|.+........ .+..|+.+|.+++..+...+.... .+    +.....|..+   ...++|+|++
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~-~~----~~~~~~~~~~---~~~~~Dvvi~   87 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGE-LG----IAIAYLDLEE---LLAEADLIIN   87 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhh-cc----cceeecchhh---ccccCCEEEe
Confidence            4578999999997666544333322 146899999998765443222221 00    1122222222   2457999997


Q ss_pred             ccc
Q 021008          200 AAL  202 (318)
Q Consensus       200 aal  202 (318)
                      ..-
T Consensus        88 ~~~   90 (155)
T cd01065          88 TTP   90 (155)
T ss_pred             CcC
Confidence            653

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	318
3o31_A	296	E81q Mutant Of Mtnas In Complex With A Reaction Int		1e-09
3fpg_A	298	Crystal Structure Of E81q Mutant Of Mtnas Length =		6e-09
3fpe_A	298	Crystal Structure Of Mtnas In Complex With Thermoni		6e-09

>pdb|3O31|A Chain A, E81q Mutant Of Mtnas In Complex With A Reaction Intermediate Length = 296

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 19/205 (9%)
Query: 88  ENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRF--PTKIAFIGSGPLPLTSIVLAINHL 145
           ++P   L  F +Y  Y++L + E  +      RF    +  FIG GPLPLT I+L+  H+
Sbjct: 91  DSPWETLRSFYFYPRYLELLKNEAAL-----GRFRRGERAVFIGGGPLPLTGILLS--HV 143
Query: 146 TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGM 205
                +  +I+P     +  ++     L        T    V   L +++V+ +AAL   
Sbjct: 144 YGMRVNVVEIEPDIAELSRKVIEG---LGVDGVNVITGDETVIDGL-EFDVLMVAALA-- 197
Query: 206 DKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVIN 265
             + K RV  ++ +Y+     ++ R+  G RA LY  V   D+ GF    V  P+ +V N
Sbjct: 198 --EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAGVVLPSGKVNN 255
Query: 266 SVVLARKYVMPSLEQQDQLSPKILP 290
           + VL  K   P  E   +L  K +P
Sbjct: 256 TSVLVFK--CPKGELNSKLEGKPIP 278

>pdb|3FPG|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 17/187 (9%)
Query: 88  ENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRF--PTKIAFIGSGPLPLTSIVLAINHL 145
           ++P   L  F +Y  Y++L + E         RF    +  FIG GPLPLT I+L+  H+
Sbjct: 92  DSPWETLRSFYFYPRYLELLKNE-----AALGRFRRGERAVFIGGGPLPLTGILLS--HV 144
Query: 146 TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGM 205
                +  +I+P     +  ++     L        T    V   L +++V+ +AAL   
Sbjct: 145 YGMRVNVVEIEPDIAELSRKVIEG---LGVDGVNVITGDETVIDGL-EFDVLMVAALA-- 198
Query: 206 DKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVIN 265
             + K RV  ++ +Y+     ++ R+  G RA LY  V   D+ GF    V  P+ +V N
Sbjct: 199 --EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAGVVLPSGKVNN 256
Query: 266 SVVLARK 272
           + VL  K
Sbjct: 257 TSVLVFK 263

>pdb|3FPE|A Chain A, Crystal Structure Of Mtnas In Complex With Thermonicotianamine Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 17/187 (9%)
Query: 88  ENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRF--PTKIAFIGSGPLPLTSIVLAINHL 145
           ++P   L  F +Y  Y++L + E         RF    +  FIG GPLPLT I+L+  H+
Sbjct: 92  DSPWETLRSFYFYPRYLELLKNE-----AALGRFRRGERAVFIGGGPLPLTGILLS--HV 144
Query: 146 TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGM 205
                +  +I+P     +  ++     L        T    V   L +++V+ +AAL   
Sbjct: 145 YGMRVNVVEIEPDIAELSRKVIEG---LGVDGVNVITGDETVIDGL-EFDVLMVAALA-- 198
Query: 206 DKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVIN 265
             + K RV  ++ +Y+     ++ R+  G RA LY  V   D+ GF    V  P+ +V N
Sbjct: 199 --EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAGVVLPSGKVNN 256
Query: 266 SVVLARK 272
           + VL  K
Sbjct: 257 TSVLVFK 263
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	2e-73
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score =  227 bits (579), Expect = 2e-73
 Identities = 61/312 (19%), Positives = 112/312 (35%), Gaps = 24/312 (7%)

Query: 1   MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNL--VVTCMPPNYPIDVTKLCQ-- 56
           M C       K+  +  ++ G+       D + +   L  +      +  ID        
Sbjct: 1   MSCYI--YWDKIKRIASRLEGMNYHFDEMDTSGVMPLLDEIEEIAHDS-TIDFESAKHIL 57

Query: 57  ---SVQDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNI 113
               +    S + +        LE   +  +   ++P   L  F +Y  Y++L + E  +
Sbjct: 58  DDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL 117

Query: 114 LTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL 173
                     +  FIG GPLPLT I+L+  H+     +  +I+P     +  ++      
Sbjct: 118 GRFRR---GERAVFIGGGPLPLTGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLGVD 172

Query: 174 STRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH 233
              +      +++      +++V+ +AAL       K RV  ++ +Y+     ++ R+  
Sbjct: 173 GVNVITGDETVID----GLEFDVLMVAALAE----PKRRVFRNIHRYVDTETRIIYRTYT 224

Query: 234 GARAFLYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLEQQDQLS-PKILPKK 292
           G RA LY  V   D+ GF    V  P+ +V N+ VL  K              P   P  
Sbjct: 225 GMRAILYAPVSDDDITGFRRAGVVLPSGKVNNTSVLVFKCPDKGELNSKLEGKPIPNPLL 284

Query: 293 CSKIEAFNPLHH 304
                     HH
Sbjct: 285 GLDSTRTGHHHH 296

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 50/366 (13%), Positives = 100/366 (27%), Gaps = 104/366 (28%)

Query: 10  KKVCELYEQ--ISGLESLKPCKDV----NMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRS 63
           K +  ++E   +   +    CKDV      + +   +          +     +V     
Sbjct: 19  KDILSVFEDAFVDNFD----CKDVQDMPKSILSKEEID--------HIIMSKDAVSGTLR 66

Query: 64  KLIRLC--GEA------EGLLESHFSSILASFEN----PIANLNIFPYYSN--------Y 103
               L    E       E +L  ++  +++  +     P     ++    +        +
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 104 IKLS---QLEFNILTQHCSRF-PTKIAFI----GSGPLPLTSIVLAINHLTTTCFDN--- 152
            K +      +  L Q      P K   I    GSG   +   V   ++      D    
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFKIF 185

Query: 153 -----YDIDPSANSKALS--LVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGM 205
                    P    + L   L   DP+ ++R    +   + + S                
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--------------- 230

Query: 206 DKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFE----VLSVFHPTD 261
               ++R +     Y     LL+L +          V +      F     +L +     
Sbjct: 231 --QAELRRLLKSKPY--ENCLLVLLN----------VQNAKAWNAFNLSCKIL-LTTRFK 275

Query: 262 EVINSVVLARKYVMPSLEQQDQLSP--------KILPKKCSKI--EA--FNPLHHGSMID 309
           +V + +  A    +        L+P        K L  +   +  E    NP    S+I 
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIA 334

Query: 310 ELAIEE 315
           E   + 
Sbjct: 335 ESIRDG 340

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 34/249 (13%), Positives = 75/249 (30%), Gaps = 59/249 (23%)

Query: 51  VTKLCQSVQDI----RSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKL 106
           +T   + V D      +  I L   +  L      S+L  +      L+         + 
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY------LDC--------RP 315

Query: 107 SQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSL 166
             L      +  +  P +++ I           +     T   + + + D        SL
Sbjct: 316 QDLP----REVLTTNPRRLSIIAE--------SIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 167 VSSDPDLSTRMFFHTTDIM----NVSSALKDYEVVFLAAL-VGMDKDEKIRVIDHLAKYM 221
              +P    R  F    +     ++ + L       L+ +   + K + + V++ L KY 
Sbjct: 364 NVLEPAE-YRKMFDRLSVFPPSAHIPTIL-------LSLIWFDVIKSDVMVVVNKLHKY- 414

Query: 222 APGALLMLRSAHGARAFLYPVVDPSDLLG-FEVLSVFHPTDEVINSVVLARKYVMPSLEQ 280
                L+ +    +   +  +    +L    E     H    +++   + + +       
Sbjct: 415 ----SLVEKQPKESTISIPSIYL--ELKVKLENEYALH--RSIVDHYNIPKTF------D 460

Query: 281 QDQLSPKIL 289
            D L P  L
Sbjct: 461 SDDLIPPYL 469

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.77
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.67
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.65
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.64
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.64
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.63
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.63
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.62
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.61
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.61
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.61
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.61
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.61
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.61
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.6
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.6
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.6
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.6
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.6
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.6
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.59
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.58
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.58
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.58
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.57
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.57
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.57
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.56
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.56
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.56
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.56
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.56
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.56
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.56
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.55
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.55
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.55
3ocj_A	305	Putative exported protein; structural genomics, PS	99.54
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.54
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.54
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.54
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.54
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.53
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.53
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.53
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.53
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.52
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.52
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.52
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.52
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.51
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.51
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.51
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.51
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.51
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.5
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.5
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.5
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.5
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.5
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.5
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.5
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.5
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.5
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.49
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.49
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.49
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.48
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.47
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.47
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.47
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.47
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.47
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.47
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.47
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.47
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.47
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.46
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.46
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.46
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.46
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.45
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.45
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.45
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.44
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.44
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.44
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.44
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.43
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.43
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.43
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.43
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.43
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.43
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.42
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.42
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.42
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.42
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.42
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.42
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.42
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.41
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.41
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.41
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.41
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.41
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.4
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.4
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.4
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.4
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.4
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.4
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.39
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.39
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.39
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.39
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.39
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.39
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.39
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.39
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.39
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.39
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.39
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.39
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.38
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.38
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.38
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.38
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.37
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.37
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.37
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.37
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.37
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.36
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.36
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.36
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.36
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.36
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.36
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.36
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.36
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.36
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.36
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.36
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.36
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.35
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.35
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.34
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.34
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.34
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.34
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.34
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.34
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.34
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.34
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.33
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.33
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.33
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.33
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.32
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.32
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.32
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.32
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.31
2o07_A	304	Spermidine synthase; structural genomics, structur	99.31
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.31
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.31
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.31
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.3
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.3
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.3
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.3
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.3
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.3
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.3
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.29
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.29
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.29
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.29
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.29
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.29
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.28
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.28
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.28
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.28
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.28
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.27
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.27
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.26
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.26
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.26
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.25
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.25
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.25
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.24
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.24
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.23
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.23
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.21
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.2
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.2
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.18
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.17
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.17
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.17
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.16
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.16
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.15
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.15
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.15
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.15
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.14
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.14
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.14
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.13
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.13
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.12
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.12
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.11
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.11
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.11
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.11
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.11
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.11
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.1
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.1
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.09
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.09
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.08
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.07
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.05
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.05
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.04
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.02
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.02
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.01
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.0
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.0
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.99
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.99
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.98
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.98
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.96
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.96
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.95
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.95
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.95
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.95
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.94
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.92
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.92
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.89
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.88
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.86
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.86
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.78
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.76
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.74
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.74
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.73
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.72
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.7
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.69
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.65
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.64
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.63
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.61
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.6
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.56
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.5
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.45
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.39
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.37
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.34
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.27
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.27
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.24
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.21
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.12
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.06
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.93
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.82
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.76
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	97.76
3lkd_A	542	Type I restriction-modification system methyltrans	97.75
3khk_A	544	Type I restriction-modification system methylation	97.74
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.71
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.69
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.68
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.62
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.56
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.54
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.53
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.5
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.49
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.48
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.46
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	97.43
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.41
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.4
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.39
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.37
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	97.32
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.31
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	97.31
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	97.3
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.28
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.27
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.26
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	97.26
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.25
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	97.25
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	97.24
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.23
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.23
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.23
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.23
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.22
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.2
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.2
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.18
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.18
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.17
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	97.16
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.16
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.15
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.14
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.14
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.13
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.13
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.12
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.12
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.09
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.08
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.08
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.08
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.07
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.05
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.04
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.04
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.03
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	97.01
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	97.01
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	97.0
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.0
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.99
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.97
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.95
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.95
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	96.95
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	96.94
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.92
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.9
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.89
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.87
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.87
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.86
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	96.84
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	96.83
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.83
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.81
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.81
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.81
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.8
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.79
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.77
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.76
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.74
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.73
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	96.71
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.7
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	96.69
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.68
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.67
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.66
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.65
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.65
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.64
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.63
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.63
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.62
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.6
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.59
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.59
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.59
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.57
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.55
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.54
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.51
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.49
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.43
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.42
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	96.42
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.39
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.37
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.36
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	96.3
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.28
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.26
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.24
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.23
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.21
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	96.21
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.21
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	96.2
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.07
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.01
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.95
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.95
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.95
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.94
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	95.93
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.92
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	95.89
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.84
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.83
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.81
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.8
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.76
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.76
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	95.75
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.74
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	95.74
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.73
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.7
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.68
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.66
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.65
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.64
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.62
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.58
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.54
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.53
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	95.52
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.5
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.44
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.43
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	95.43
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.41
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.39
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.37
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.35
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.34
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.3
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.3
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	95.29
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.28
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	95.27
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	95.27
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.23
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.2
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.17
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.14
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.1
2oo3_A	283	Protein involved in catabolism of external DNA; st	95.1
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	95.1
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	95.07
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.05
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.04
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	95.03
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.95
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.93
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.91
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.9
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.9
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.86
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	94.73
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.68
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	94.66
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.64
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.57
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.51
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	94.5
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	94.49
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	94.48
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.46
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	94.43
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.39
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.38
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.29
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.24
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	94.23
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.23
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	94.17
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	94.14
3ufb_A	530	Type I restriction-modification system methyltran	94.12
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.1
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.05
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.02
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	94.0
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.0
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	94.0
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	93.94
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	93.93
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.82
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.71
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	93.68
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	93.63
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	93.56

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=100.00  E-value=1.2e-51  Score=390.44  Aligned_cols=260  Identities=22%  Similarity=0.290  Sum_probs=235.8

Q ss_pred             CCchhhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHh---cC----CCCCcchhhcccccHHHHHHHHHHHHHHhh
Q 021008            1 MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVT---CM----PPNYPIDVTKLCQSVQDIRSKLIRLCGEAE   73 (318)
Q Consensus         1 ~~~~~~~lv~~i~~~~~~i~~l~~l~ps~~vn~lf~~Lv~~---c~----~~~~~~~~~~~~~~~~~l~~~l~~l~~~ae   73 (318)
                      |.|-  ....+|.++|+.|+++.+|+|++.+|+||+.|.++   |.    ..+ .++.++.+|+++++++.++++|++++
T Consensus         1 ~~~~--~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~-~~~~vl~~~~~~~l~~~~~~~y~~~~   77 (298)
T 3fpf_A            1 MSCY--IYWDKIKRIASRLEGMNYHFDEMDTSGVMPLLDEIEEIAHDSTIDFE-SAKHILDDAEMNHALSLIRKFYVNLG   77 (298)
T ss_dssp             -CCC--HHHHHHHHHHHHHGGGTTCGGGCCTTTTHHHHHHHHHHHTCTTSCHH-HHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             CcHH--HHHHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcccCCcCHH-HHHHHhcChhHHHHHHHHHHHHHHHH
Confidence            4454  46899999999999999999999999999955555   44    333 68888899999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEE
Q 021008           74 GLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNY  153 (318)
Q Consensus        74 ~~lE~~~A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gv  153 (318)
                      +.+|.+||++++++++||++|..||||+||+++++.|+.++.   ..++++|||||||++|+|++.+|+.  +|++|+||
T Consensus        78 ~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~---l~~g~rVLDIGcG~G~~ta~~lA~~--~ga~V~gI  152 (298)
T 3fpf_A           78 MKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGR---FRRGERAVFIGGGPLPLTGILLSHV--YGMRVNVV  152 (298)
T ss_dssp             HHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTT---CCTTCEEEEECCCSSCHHHHHHHHT--TCCEEEEE
T ss_pred             HHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcC---CCCcCEEEEECCCccHHHHHHHHHc--cCCEEEEE
Confidence            999999999999999999999999999999999999987542   5899999999999999999999873  79999999


Q ss_pred             eCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          154 DIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       154 Did~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      |+|+++++.||+++++ .|+ ++++|++||+.+++  .++||+||+++++    ++|.+++++++++|||||+|++++++
T Consensus       153 Dis~~~l~~Ar~~~~~-~gl-~~v~~v~gDa~~l~--d~~FDvV~~~a~~----~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          153 EIEPDIAELSRKVIEG-LGV-DGVNVITGDETVID--GLEFDVLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             ESSHHHHHHHHHHHHH-HTC-CSEEEEESCGGGGG--GCCCSEEEECTTC----SCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             ECCHHHHHHHHHHHHh-cCC-CCeEEEECchhhCC--CCCcCEEEECCCc----cCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            9999999999999998 888 89999999999986  4689999998764    68999999999999999999999999


Q ss_pred             CcccccccCCCccccCCcEEEEEEcCchhHHHHHHHHhhccCC
Q 021008          234 GARAFLYPVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMP  276 (318)
Q Consensus       234 g~r~~lYP~v~~~~l~gf~~~~~~~p~~~VvNsvv~ark~~~~  276 (318)
                      |++.++||.+++.+++||+.+.+.||.++|+|||++|||...+
T Consensus       225 ~~r~~l~~~v~~~~~~gf~~~~~~~p~~~v~N~vv~a~k~~~~  267 (298)
T 3fpf_A          225 GMRAILYAPVSDDDITGFRRAGVVLPSGKVNNTSVLVFKCPDK  267 (298)
T ss_dssp             GGGGGSSCCCCTGGGTTEEEEEEECCCTTCCCEEEEEEECC--
T ss_pred             chhhhccccCChhhhhhhhheeEECCCCCcCcEEEEEEccCCc
Confidence            9999999999999889999999999999999999999998544

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.77  E-value=6.3e-18  Score=156.17  Aligned_cols=127  Identities=17%  Similarity=0.193  Sum_probs=103.4

Q ss_pred             CcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhC-CCCcEEEEEeCChHHHHHHHHHhhcCCCCCC
Q 021008           97 FPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINH-LTTTCFDNYDIDPSANSKALSLVSSDPDLST  175 (318)
Q Consensus        97 fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~-~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~  175 (318)
                      -|+|++...++..-....    ..++.||||||||+ |..++.||++. .+|++|+|||+|+++++.|++.++. .+...
T Consensus        50 vP~Y~~~~~~i~~l~~~~----~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~-~~~~~  123 (261)
T 4gek_A           50 VPGYSNIISMIGMLAERF----VQPGTQVYDLGCSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPT  123 (261)
T ss_dssp             STTHHHHHHHHHHHHHHH----CCTTCEEEEETCTT-THHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHT-SCCSS
T ss_pred             CCCHHHHHHHHHHHHHHh----CCCCCEEEEEeCCC-CHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHh-hccCc
Confidence            478877776665433322    47889999999996 66667888754 2689999999999999999999988 88889


Q ss_pred             CeEEEEccccccCcCCCCccEEEeccc-cCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          176 RMFFHTTDIMNVSSALKDYEVVFLAAL-VGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       176 ri~f~~gDa~~l~~~l~~fD~V~~aal-vgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +++|+++|+.+++.  .+||+|+.... ..++.+++.++++++++.|||||+|++.+
T Consensus       124 ~v~~~~~D~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          124 PVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             CEEEEESCTTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEeecccccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence            99999999999865  47998886543 34577888999999999999999999865

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.67  E-value=1.2e-16  Score=141.12  Aligned_cols=102  Identities=10%  Similarity=0.082  Sum_probs=84.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC-----------CCCCeEEEEccccccC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD-----------LSTRMFFHTTDIMNVS  188 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g-----------l~~ri~f~~gDa~~l~  188 (318)
                      .++.||||||||+ |..+..||++   |.+|+|||+|++|++.|++.... .+           ...+++|+++|+.+++
T Consensus        21 ~~~~~vLD~GCG~-G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~d~~~l~   95 (203)
T 1pjz_A           21 VPGARVLVPLCGK-SQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGE-QPHITSQGDFKVYAAPGIEIWCGDFFALT   95 (203)
T ss_dssp             CTTCEEEETTTCC-SHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCS-CSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred             CCCCEEEEeCCCC-cHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccC-CcccccccccccccCCccEEEECccccCC
Confidence            5789999999996 6777889874   88999999999999999987642 10           1368999999999998


Q ss_pred             cCC-CCccEEEec-cccCCChhHHHHHHHHHHHhccCCeE
Q 021008          189 SAL-KDYEVVFLA-ALVGMDKDEKIRVIDHLAKYMAPGAL  226 (318)
Q Consensus       189 ~~l-~~fD~V~~a-alvgm~~~~k~~vl~~l~r~LkpGg~  226 (318)
                      ... ++||+|+.. ++..++.+++.+++++++++|||||+
T Consensus        96 ~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~  135 (203)
T 1pjz_A           96 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS  135 (203)
T ss_dssp             HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred             cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence            654 689999953 44456777888999999999999998

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.65  E-value=2.6e-16  Score=141.59  Aligned_cols=104  Identities=20%  Similarity=0.234  Sum_probs=91.4

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC-CCeEEEEccccccCcCC--CCccEEEe
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS-TRMFFHTTDIMNVSSAL--KDYEVVFL  199 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~-~ri~f~~gDa~~l~~~l--~~fD~V~~  199 (318)
                      .+||+|||| .|.+++++|+.+.++++|+++|+|+++++.|++.++. .|+. ++++|+++|+.+....+  ++||+||+
T Consensus        58 ~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           58 TGAIAITPA-AGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFRE-AGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             CEEEEESTT-HHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHH-TTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CCEEEEcCC-chHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            399999999 5899999998765689999999999999999999998 8998 89999999998864433  58999999


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++    ++....++++++.+.|||||++++.+.
T Consensus       136 d~----~~~~~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          136 QV----SPMDLKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             CC----CTTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred             cC----cHHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            87    346778899999999999999999773

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.64  E-value=2.2e-16  Score=143.81  Aligned_cols=107  Identities=11%  Similarity=0.191  Sum_probs=93.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC------CCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA------LKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~------l~~  193 (318)
                      .++++||||||| .|.+++.+|+...++++|++||+|+++++.|++.++. .|+.++++|+++|+.+....      .++
T Consensus        59 ~~~~~VLDiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~g~~~~i~~~~gda~~~l~~~~~~~~~~~  136 (242)
T 3r3h_A           59 TRAKKVLELGTF-TGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE-AKQEHKIKLRLGPALDTLHSLLNEGGEHQ  136 (242)
T ss_dssp             HTCSEEEEEESC-CSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHH-TTCTTTEEEEESCHHHHHHHHHHHHCSSC
T ss_pred             cCcCEEEEeeCC-cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEEcCHHHHHHHHhhccCCCC
Confidence            578899999999 5888899998653489999999999999999999998 89989999999999875433      358


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ||+||+++    +.....++++++.+.|||||+|++.+.
T Consensus       137 fD~V~~d~----~~~~~~~~l~~~~~~LkpGG~lv~d~~  171 (242)
T 3r3h_A          137 FDFIFIDA----DKTNYLNYYELALKLVTPKGLIAIDNI  171 (242)
T ss_dssp             EEEEEEES----CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             EeEEEEcC----ChHHhHHHHHHHHHhcCCCeEEEEECC
Confidence            99999987    457788899999999999999999873

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.64  E-value=2.8e-15  Score=132.65  Aligned_cols=107  Identities=17%  Similarity=0.190  Sum_probs=91.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-----CCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-----LKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-----l~~f  194 (318)
                      .++++||+||||+ |..++.+|+.+.++++|+++|+|+++++.|++.+.. .|+.++++|+++|+.+....     .+.|
T Consensus        57 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~~~f  134 (223)
T 3duw_A           57 QGARNILEIGTLG-GYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER-ANLNDRVEVRTGLALDSLQQIENEKYEPF  134 (223)
T ss_dssp             HTCSEEEEECCTT-SHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred             hCCCEEEEecCCc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence            5789999999995 778888997653389999999999999999999998 89988999999999764222     1479


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+||+++    ......++++++.+.|+|||++++.+.
T Consensus       135 D~v~~d~----~~~~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          135 DFIFIDA----DKQNNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             SEEEECS----CGGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             CEEEEcC----CcHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9999887    346778999999999999999999874

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.63  E-value=2.3e-15  Score=138.25  Aligned_cols=106  Identities=11%  Similarity=0.098  Sum_probs=86.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc---------CC------CCCCCeEEEEccc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS---------DP------DLSTRMFFHTTDI  184 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~---------~~------gl~~ri~f~~gDa  184 (318)
                      .++.||||||||. |..+..||++   |.+|+|||+|+.+++.|++....         ..      ....+++|+++|+
T Consensus        67 ~~~~~vLD~GCG~-G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~  142 (252)
T 2gb4_A           67 QSGLRVFFPLCGK-AIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI  142 (252)
T ss_dssp             CCSCEEEETTCTT-CTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred             CCCCeEEEeCCCC-cHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence            4778999999995 6777889973   89999999999999999876531         00      1246899999999


Q ss_pred             cccCcCC-CCccEEEec-cccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          185 MNVSSAL-KDYEVVFLA-ALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       185 ~~l~~~l-~~fD~V~~a-alvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      .+++... ++||+|+.. ++..++.+++.+++++++++|||||++++
T Consensus       143 ~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l  189 (252)
T 2gb4_A          143 FDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLV  189 (252)
T ss_dssp             TTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            9998654 689999964 34456777889999999999999999864

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.63  E-value=2.3e-15  Score=136.92  Aligned_cols=107  Identities=16%  Similarity=0.224  Sum_probs=91.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc-CcC--CCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV-SSA--LKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l-~~~--l~~fD~  196 (318)
                      .++++|||||||+ |..++.+|+.+.++++|+++|+|+++++.|++.++. .|+.++++|+++|+.+. +..  .+.||+
T Consensus        62 ~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~g~~~~v~~~~~d~~~~l~~~~~~~~fD~  139 (248)
T 3tfw_A           62 TQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQL-AGVDQRVTLREGPALQSLESLGECPAFDL  139 (248)
T ss_dssp             HTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHH-TTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred             cCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence            5789999999995 788889998653389999999999999999999998 89988999999999873 322  238999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ||+++    +......+++++.+.|||||+|++.+.
T Consensus       140 V~~d~----~~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          140 IFIDA----DKPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             EEECS----CGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             EEECC----chHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            99887    456788899999999999999999873

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.62  E-value=2.3e-15  Score=130.95  Aligned_cols=107  Identities=18%  Similarity=0.187  Sum_probs=90.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..++++  ++.+|+|+|+|+.+++.|++.+.. .|+..+++|+++|+.+++...+.||+|+.
T Consensus        42 ~~~~~vLdiG~G~-G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  117 (219)
T 3dlc_A           42 ITAGTCIDIGSGP-GALSIALAKQ--SDFSIRALDFSKHMNEIALKNIAD-ANLNDRIQIVQGDVHNIPIEDNYADLIVS  117 (219)
T ss_dssp             CCEEEEEEETCTT-SHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHh-ccccCceEEEEcCHHHCCCCcccccEEEE
Confidence            3444999999996 5666778875  789999999999999999999998 88888999999999998877679999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+. ...+..++++++++.|+|||.+++.+
T Consensus       118 ~~~l~-~~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          118 RGSVF-FWEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             ESCGG-GCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CchHh-hccCHHHHHHHHHHhCCCCCEEEEEe
Confidence            65432 12577889999999999999999875

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.61  E-value=1.2e-15  Score=138.07  Aligned_cols=107  Identities=7%  Similarity=0.054  Sum_probs=88.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~  196 (318)
                      ..++.|||+|||| .|.++..+|+.  .+.+|||||+||++++.|++.+..   .+.+++++.+|+.++.  ...++||.
T Consensus        58 ~~~G~rVLdiG~G-~G~~~~~~~~~--~~~~v~~id~~~~~~~~a~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~FD~  131 (236)
T 3orh_A           58 SSKGGRVLEVGFG-MAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPR---QTHKVIPLKGLWEDVAPTLPDGHFDG  131 (236)
T ss_dssp             TTTCEEEEEECCT-TSHHHHHHTTS--CEEEEEEEECCHHHHHHHHHHGGG---CSSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             ccCCCeEEEECCC-ccHHHHHHHHh--CCcEEEEEeCCHHHHHHHHHHHhh---CCCceEEEeehHHhhcccccccCCce
Confidence            4788999999999 68888889864  467999999999999999999887   3467899999998753  34458999


Q ss_pred             EEeccccC----CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVG----MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvg----m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+++..+.    ....++.+++++++|+|||||+|++-+
T Consensus       132 i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            98765432    245688999999999999999998865

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.61  E-value=2e-15  Score=137.83  Aligned_cols=106  Identities=15%  Similarity=0.197  Sum_probs=92.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-------CC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-------LK  192 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-------l~  192 (318)
                      .++++||+|||| .|++++.+|+.+.++++|+++|+|+++++.|++.++. .|+.++++|+++|+.+....       .+
T Consensus        78 ~~~~~VLeiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~g~~~~i~~~~gda~~~l~~l~~~~~~~~  155 (247)
T 1sui_A           78 INAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKK-AGVDHKIDFREGPALPVLDEMIKDEKNHG  155 (247)
T ss_dssp             TTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHH-TTCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred             hCcCEEEEeCCC-cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence            578899999999 5899999998753489999999999999999999998 88888999999999874221       35


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .||+||+++    ++.....+++.+.+.|||||++++.+
T Consensus       156 ~fD~V~~d~----~~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          156 SYDFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             CBSEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             CEEEEEEcC----chHHHHHHHHHHHHhCCCCeEEEEec
Confidence            899999987    34678899999999999999999987

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.61  E-value=8.6e-15  Score=132.90  Aligned_cols=108  Identities=16%  Similarity=0.268  Sum_probs=91.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..+..+++++  +++|+|+|+|+++++.|++.+.. .|+.++++|+++|+.+++...++||+|+
T Consensus        59 ~~~~~~vLDiGcG~-G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~  134 (273)
T 3bus_A           59 VRSGDRVLDVGCGI-GKPAVRLATAR--DVRVTGISISRPQVNQANARATA-AGLANRVTFSYADAMDLPFEDASFDAVW  134 (273)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEECCTTSCCSCTTCEEEEE
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEECccccCCCCCCCccEEE
Confidence            36789999999996 56667788764  89999999999999999999988 8888899999999999887767999998


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....+. ...++.++++++.+.|||||++++.+
T Consensus       135 ~~~~l~-~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          135 ALESLH-HMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             EESCTT-TSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             Eechhh-hCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            654332 22467899999999999999998876

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.61  E-value=2.3e-15  Score=136.18  Aligned_cols=107  Identities=18%  Similarity=0.227  Sum_probs=93.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-------CC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-------LK  192 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-------l~  192 (318)
                      .++++||+|||| .|.+++++|+.+.++++|+++|+|+++++.|++.++. .|+.++++|+++|+.+....       .+
T Consensus        69 ~~~~~VLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~g~~~~i~~~~gda~~~l~~l~~~~~~~~  146 (237)
T 3c3y_A           69 VNAKKTIEVGVF-TGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRK-AGVEHKINFIESDAMLALDNLLQGQESEG  146 (237)
T ss_dssp             TTCCEEEEECCT-TSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH-TTCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred             hCCCEEEEeCCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence            578999999999 5888899998753489999999999999999999998 88988999999999874221       35


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .||+||+++    ++.....+++.+.+.|+|||++++.+.
T Consensus       147 ~fD~I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          147 SYDFGFVDA----DKPNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             CEEEEEECS----CGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             CcCEEEECC----chHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            899999987    457888999999999999999999873

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.61  E-value=2.4e-15  Score=133.00  Aligned_cols=107  Identities=16%  Similarity=0.233  Sum_probs=91.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC------CC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL------KD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l------~~  193 (318)
                      .++++|||||||+ |..++.+|+.+.++++|+++|+|+++++.|++.++. .|+.++++|+++|+.+.....      +.
T Consensus        63 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  140 (225)
T 3tr6_A           63 MQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEK-AGLSDKIGLRLSPAKDTLAELIHAGQAWQ  140 (225)
T ss_dssp             HTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred             hCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHH-CCCCCceEEEeCCHHHHHHHhhhccCCCC
Confidence            4778999999995 788888997643389999999999999999999998 889889999999997642211      58


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ||+||+++    +......+++.+.+.|||||+|++.+.
T Consensus       141 fD~v~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~~  175 (225)
T 3tr6_A          141 YDLIYIDA----DKANTDLYYEESLKLLREGGLIAVDNV  175 (225)
T ss_dssp             EEEEEECS----CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             ccEEEECC----CHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            99999877    356788899999999999999999873

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.61  E-value=1.6e-15  Score=136.24  Aligned_cols=105  Identities=11%  Similarity=0.131  Sum_probs=91.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--ALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l~~fD~V  197 (318)
                      .++++|||||||+ |..++.+|+. .++.+|+++|+|+++++.|++.++. .|+.++++|+++|+.+...  ..++||+|
T Consensus        70 ~~~~~vLDiG~G~-G~~~~~la~~-~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~fD~V  146 (232)
T 3ntv_A           70 NNVKNILEIGTAI-GYSSMQFASI-SDDIHVTTIERNETMIQYAKQNLAT-YHFENQVRIIEGNALEQFENVNDKVYDMI  146 (232)
T ss_dssp             HTCCEEEEECCSS-SHHHHHHHTT-CTTCEEEEEECCHHHHHHHHHHHHH-TTCTTTEEEEESCGGGCHHHHTTSCEEEE
T ss_pred             cCCCEEEEEeCch-hHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEECCHHHHHHhhccCCccEE
Confidence            5789999999995 7888899974 5799999999999999999999998 8888899999999987533  23589999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+++    +.....++++.+.+.|||||+|++.+
T Consensus       147 ~~~~----~~~~~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          147 FIDA----AKAQSKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             EEET----TSSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             EEcC----cHHHHHHHHHHHHHhcCCCeEEEEee
Confidence            9876    34567889999999999999999976

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.60  E-value=1.8e-15  Score=132.90  Aligned_cols=149  Identities=14%  Similarity=0.057  Sum_probs=107.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..+..+++...++.+|+|+|+|+++++.|++.+.. .++. +++|+.+|+.+++...+.||+|+
T Consensus        35 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~-~~~~~~~d~~~~~~~~~~fD~v~  111 (219)
T 3dh0_A           35 LKEGMTVLDVGTGA-GFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK-LGLK-NVEVLKSEENKIPLPDNTVDFIF  111 (219)
T ss_dssp             CCTTCEEEESSCTT-CTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH-HTCT-TEEEEECBTTBCSSCSSCEEEEE
T ss_pred             CCCCCEEEEEecCC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-cCCC-cEEEEecccccCCCCCCCeeEEE
Confidence            36788999999996 555567777644678999999999999999999887 6664 89999999999877667899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcc----cccccCCCccc----cC--CcEEEEEEcCchhHHHHHH
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGAR----AFLYPVVDPSD----LL--GFEVLSVFHPTDEVINSVV  268 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r----~~lYP~v~~~~----l~--gf~~~~~~~p~~~VvNsvv  268 (318)
                      ....+. ...+..++++++.+.|+|||.+++.+.....    .......+.++    ++  ||+...+....+.  ...+
T Consensus       112 ~~~~l~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~--~~~~  188 (219)
T 3dh0_A          112 MAFTFH-ELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKY--CFGV  188 (219)
T ss_dssp             EESCGG-GCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTT--EEEE
T ss_pred             eehhhh-hcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCc--eEEE
Confidence            765442 1246789999999999999999987622111    11111122332    22  9998766544332  2355


Q ss_pred             HHhhc
Q 021008          269 LARKY  273 (318)
Q Consensus       269 ~ark~  273 (318)
                      +++|.
T Consensus       189 ~~~k~  193 (219)
T 3dh0_A          189 YAMIV  193 (219)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            66664

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.60  E-value=7.1e-15  Score=129.46  Aligned_cols=109  Identities=12%  Similarity=0.175  Sum_probs=88.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC----CeEEEEccccccCcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST----RMFFHTTDIMNVSSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~----ri~f~~gDa~~l~~~l~~fD  195 (318)
                      .++.+|||||||+ |..+..++++ .+..+|+|+|+|+.+++.|++.+.. .++..    +++|+++|+..++...++||
T Consensus        28 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  104 (219)
T 3jwg_A           28 VNAKKVIDLGCGE-GNLLSLLLKD-KSFEQITGVDVSYSVLERAKDRLKI-DRLPEMQRKRISLFQSSLVYRDKRFSGYD  104 (219)
T ss_dssp             TTCCEEEEETCTT-CHHHHHHHTS-TTCCEEEEEESCHHHHHHHHHHHTG-GGSCHHHHTTEEEEECCSSSCCGGGTTCS
T ss_pred             cCCCEEEEecCCC-CHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHHHHh-hccccccCcceEEEeCcccccccccCCCC
Confidence            5789999999996 5566677764 3568999999999999999999887 66654    89999999987766667899


Q ss_pred             EEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+....+ +++.++..++++++++.|||||+++...
T Consensus       105 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A          105 AATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            99965533 5555667899999999999999776654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.60  E-value=6e-15  Score=131.00  Aligned_cols=105  Identities=13%  Similarity=0.159  Sum_probs=88.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.+ |+++|+|+|+|+.+++.|++.+.. .+   +++|+++|+.+++.. +.||+|+.
T Consensus        43 ~~~~~vLDiG~G~-G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-~~---~~~~~~~d~~~~~~~-~~fD~v~~  115 (234)
T 3dtn_A           43 TENPDILDLGAGT-GLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRG-NL---KVKYIEADYSKYDFE-EKYDMVVS  115 (234)
T ss_dssp             CSSCEEEEETCTT-SHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCS-CT---TEEEEESCTTTCCCC-SCEEEEEE
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhcc-CC---CEEEEeCchhccCCC-CCceEEEE
Confidence            5779999999996 55566777764 899999999999999999999876 33   899999999998766 79999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++..++.++++++++.|||||.+++.+
T Consensus       116 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          116 ALSIHHLEDEDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eCccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            6533 5565677789999999999999999866

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.60  E-value=4.1e-15  Score=133.57  Aligned_cols=107  Identities=17%  Similarity=0.152  Sum_probs=90.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..++.+|+.+  +++|+|+|+|+.+++.|++.++. .|+..+++|+++|+.++++ .++||+|+
T Consensus        34 ~~~~~~VLDiGcG~-G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~v~~~~~d~~~~~~-~~~fD~V~  108 (256)
T 1nkv_A           34 MKPGTRILDLGSGS-GEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEE-LGVSERVHFIHNDAAGYVA-NEKCDVAA  108 (256)
T ss_dssp             CCTTCEEEEETCTT-CHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEESCCTTCCC-SSCEEEEE
T ss_pred             CCCCCEEEEECCCC-CHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEECChHhCCc-CCCCCEEE
Confidence            36789999999996 66667788764  88999999999999999999988 7888899999999999876 56899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...... ...+..++++++++.|||||.+++.+
T Consensus       109 ~~~~~~-~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          109 CVGATW-IAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             EESCGG-GTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ECCChH-hcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            644321 12367889999999999999999865

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.60  E-value=1.6e-14  Score=127.18  Aligned_cols=109  Identities=10%  Similarity=0.108  Sum_probs=89.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC----CeEEEEccccccCcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST----RMFFHTTDIMNVSSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~----ri~f~~gDa~~l~~~l~~fD  195 (318)
                      .++.+|||||||+ |..+..++++ .+.++|+|+|+|+++++.|++.+.. .+++.    +++|+++|+...+...++||
T Consensus        28 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  104 (217)
T 3jwh_A           28 SNARRVIDLGCGQ-GNLLKILLKD-SFFEQITGVDVSYRSLEIAQERLDR-LRLPRNQWERLQLIQGALTYQDKRFHGYD  104 (217)
T ss_dssp             TTCCEEEEETCTT-CHHHHHHHHC-TTCSEEEEEESCHHHHHHHHHHHTT-CCCCHHHHTTEEEEECCTTSCCGGGCSCS
T ss_pred             cCCCEEEEeCCCC-CHHHHHHHhh-CCCCEEEEEECCHHHHHHHHHHHHH-hcCCcccCcceEEEeCCcccccccCCCcC
Confidence            5788999999996 5555677764 3568999999999999999999887 67765    89999999987765556899


Q ss_pred             EEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+....+ .++.++..++++++.+.|||||++++..
T Consensus       105 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A          105 AATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            99965544 5565667899999999999999877655

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.60  E-value=7.2e-15  Score=126.12  Aligned_cols=108  Identities=10%  Similarity=0.051  Sum_probs=85.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V  197 (318)
                      ..++.+|||||||+ |..++.+|++   +.+|+|+|+|+++++.|++.++. .|+ .+++|+++|..+++. ..++||+|
T Consensus        20 ~~~~~~vLDiGcG~-G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~-~~~-~~v~~~~~~~~~l~~~~~~~fD~v   93 (185)
T 3mti_A           20 LDDESIVVDATMGN-GNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSD-LGI-ENTELILDGHENLDHYVREPIRAA   93 (185)
T ss_dssp             CCTTCEEEESCCTT-SHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHH-HTC-CCEEEEESCGGGGGGTCCSCEEEE
T ss_pred             CCCCCEEEEEcCCC-CHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHH-cCC-CcEEEEeCcHHHHHhhccCCcCEE
Confidence            36789999999996 6666788873   89999999999999999999987 777 889999988887542 23479999


Q ss_pred             Eec-cccCC-------ChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          198 FLA-ALVGM-------DKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       198 ~~a-alvgm-------~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++. ..+..       ......++++++.+.|||||++++-..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           94 IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             EEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            865 22221       235677899999999999999988653

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.59  E-value=1.8e-15  Score=134.50  Aligned_cols=108  Identities=11%  Similarity=0.166  Sum_probs=87.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC------CC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL------KD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l------~~  193 (318)
                      .++++|||||||+ |..++.+|+.+.++++|++||+|+++++.|++.++. .|+.++++|+++|+.+....+      +.
T Consensus        57 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  134 (221)
T 3u81_A           57 YSPSLVLELGAYC-GYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF-AGLQDKVTILNGASQDLIPQLKKKYDVDT  134 (221)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-HTCGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred             cCCCEEEEECCCC-CHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHH-cCCCCceEEEECCHHHHHHHHHHhcCCCc
Confidence            5789999999995 788889997544589999999999999999999998 888889999999997632222      47


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||+||+++... ...+..++++.+ +.|||||+|++.+
T Consensus       135 fD~V~~d~~~~-~~~~~~~~~~~~-~~LkpgG~lv~~~  170 (221)
T 3u81_A          135 LDMVFLDHWKD-RYLPDTLLLEKC-GLLRKGTVLLADN  170 (221)
T ss_dssp             CSEEEECSCGG-GHHHHHHHHHHT-TCCCTTCEEEESC
T ss_pred             eEEEEEcCCcc-cchHHHHHHHhc-cccCCCeEEEEeC
Confidence            99999887332 123444677777 9999999999977

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.58  E-value=1.1e-14  Score=130.79  Aligned_cols=106  Identities=16%  Similarity=0.122  Sum_probs=90.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.+++..  +.+|+|+|+|+.+++.|++.+.. .|+.++++|+++|+.+++...++||+|+.
T Consensus        45 ~~~~~vLDiG~G~-G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  120 (257)
T 3f4k_A           45 TDDAKIADIGCGT-GGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVK-ANCADRVKGITGSMDNLPFQNEELDLIWS  120 (257)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHHHHC--CSEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEECCTTSCSSCTTCEEEEEE
T ss_pred             CCCCeEEEeCCCC-CHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHH-cCCCCceEEEECChhhCCCCCCCEEEEEe
Confidence            5778999999996 66677888764  35999999999999999999998 89989999999999998877679999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+..-  +..++++++.+.|||||.+++.+
T Consensus       121 ~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          121 EGAIYNI--GFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             ESCSCCC--CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cChHhhc--CHHHHHHHHHHHcCCCcEEEEEE
Confidence            6544321  57789999999999999999876

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.58  E-value=1.8e-14  Score=134.54  Aligned_cols=105  Identities=3%  Similarity=0.015  Sum_probs=90.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.+|+++  +++|+|+|+|+++++.|++.++. .|+..+++|+++|+.+++...+.||+|+.
T Consensus       116 ~~~~~vLDiGcG~-G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  191 (312)
T 3vc1_A          116 GPDDTLVDAGCGR-GGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARE-LRIDDHVRSRVCNMLDTPFDKGAVTASWN  191 (312)
T ss_dssp             CTTCEEEEESCTT-SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEECCTTSCCCCTTCEEEEEE
T ss_pred             CCCCEEEEecCCC-CHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHH-cCCCCceEEEECChhcCCCCCCCEeEEEE
Confidence            5678999999996 55567788764  88999999999999999999998 88888999999999998876679999986


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .+   +..++++++.+.|||||++++..
T Consensus       192 ~~~l~~~---~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          192 NESTMYV---DLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             ESCGGGS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCchhhC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence            5433 33   38899999999999999998866

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.58  E-value=7.1e-15  Score=130.99  Aligned_cols=106  Identities=14%  Similarity=0.149  Sum_probs=88.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||. |..+..+++   ++.+|+|+|+|+.+++.|++.... .+...+++|+++|+.+++. ...||+|+.
T Consensus        65 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~-~~~fD~v~~  138 (235)
T 3lcc_A           65 LPLGRALVPGCGG-GHDVVAMAS---PERFVVGLDISESALAKANETYGS-SPKAEYFSFVKEDVFTWRP-TELFDLIFD  138 (235)
T ss_dssp             SCCEEEEEETCTT-CHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTT-SGGGGGEEEECCCTTTCCC-SSCEEEEEE
T ss_pred             CCCCCEEEeCCCC-CHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhc-cCCCcceEEEECchhcCCC-CCCeeEEEE
Confidence            4556999999996 566667775   699999999999999999999887 6667899999999999763 348999996


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.++..++++++.+.|||||.+++..
T Consensus       139 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  171 (235)
T 3lcc_A          139 YVFFCAIEPEMRPAWAKSMYELLKPDGELITLM  171 (235)
T ss_dssp             ESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence            5533 5566789999999999999999998855

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.57  E-value=1.4e-14  Score=133.50  Aligned_cols=106  Identities=13%  Similarity=0.244  Sum_probs=90.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||. |..+..+++.+  |++|+|+|+|+.+++.|++..+. .|+..+++|+++|+.+++...++||+|+.
T Consensus        81 ~~~~~vLDiGcG~-G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  156 (297)
T 2o57_A           81 QRQAKGLDLGAGY-GGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQ-AGLADNITVKYGSFLEIPCEDNSYDFIWS  156 (297)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHH-HTCTTTEEEEECCTTSCSSCTTCEEEEEE
T ss_pred             CCCCEEEEeCCCC-CHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEEcCcccCCCCCCCEeEEEe
Confidence            6788999999996 56666788754  78999999999999999999887 78888999999999999877779999996


Q ss_pred             ccc-cCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AAL-VGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aal-vgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ... .++  .++.+++++++++|||||.+++.+
T Consensus       157 ~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          157 QDAFLHS--PDKLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             ESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhhc--CCHHHHHHHHHHHcCCCeEEEEEE
Confidence            543 343  457899999999999999998876

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.57  E-value=1.3e-14  Score=131.98  Aligned_cols=106  Identities=16%  Similarity=0.112  Sum_probs=91.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.+|+.  ++++|+|+|+|+.+++.|++.++. .|+..+++|+++|+.+++...++||+|+.
T Consensus        45 ~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~i~~  120 (267)
T 3kkz_A           45 TEKSLIADIGCGT-GGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQ-SGLQNRVTGIVGSMDDLPFRNEELDLIWS  120 (267)
T ss_dssp             CTTCEEEEETCTT-CHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEECCTTSCCCCTTCEEEEEE
T ss_pred             CCCCEEEEeCCCC-CHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHH-cCCCcCcEEEEcChhhCCCCCCCEEEEEE
Confidence            6789999999996 6666778864  688999999999999999999998 88989999999999998866679999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+.. . +..++++++.+.|||||.+++.+
T Consensus       121 ~~~~~~-~-~~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          121 EGAIYN-I-GFERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             SSCGGG-T-CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCCcee-c-CHHHHHHHHHHHcCCCCEEEEEE
Confidence            654421 1 56889999999999999998876

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.57  E-value=2.1e-14  Score=128.90  Aligned_cols=106  Identities=16%  Similarity=0.267  Sum_probs=90.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..+..+++++  +++|+|+|+|+++++.|++.... .   .+++|+++|+.+++...++||+|+
T Consensus        53 ~~~~~~vLdiG~G~-G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-~---~~~~~~~~d~~~~~~~~~~fD~v~  125 (266)
T 3ujc_A           53 LNENSKVLDIGSGL-GGGCMYINEKY--GAHTHGIDICSNIVNMANERVSG-N---NKIIFEANDILTKEFPENNFDLIY  125 (266)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCS-C---TTEEEEECCTTTCCCCTTCEEEEE
T ss_pred             CCCCCEEEEECCCC-CHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhc-C---CCeEEEECccccCCCCCCcEEEEe
Confidence            36788999999995 66667788764  89999999999999999998876 2   789999999999877777999999


Q ss_pred             ecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ... +.+++..+..++++++++.|||||.+++.+
T Consensus       126 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          126 SRDAILALSLENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            764 335566899999999999999999999876

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.56  E-value=5.4e-15  Score=129.98  Aligned_cols=106  Identities=19%  Similarity=0.256  Sum_probs=90.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc-CcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV-SSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l-~~~l~~fD~V~  198 (318)
                      .++++||||||| .|..++.+|+.+.++++|+++|+|+++++.|++.++. .|+.++++|+++|+.+. +...+ ||+||
T Consensus        55 ~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~-fD~v~  131 (210)
T 3c3p_A           55 KQPQLVVVPGDG-LGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD-NGLIDRVELQVGDPLGIAAGQRD-IDILF  131 (210)
T ss_dssp             HCCSEEEEESCG-GGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-HSGGGGEEEEESCHHHHHTTCCS-EEEEE
T ss_pred             hCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-CCCCceEEEEEecHHHHhccCCC-CCEEE
Confidence            467899999999 5888889997542389999999999999999999987 78878999999999875 43334 99999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +++    +......+++++.+.|||||++++.+.
T Consensus       132 ~~~----~~~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          132 MDC----DVFNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             EET----TTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             EcC----ChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence            886    345778999999999999999999763

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.56  E-value=2e-14  Score=133.18  Aligned_cols=107  Identities=7%  Similarity=0.027  Sum_probs=90.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC-CCCCCeEEEEccccccCcCC------
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP-DLSTRMFFHTTDIMNVSSAL------  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~-gl~~ri~f~~gDa~~l~~~l------  191 (318)
                      ..++.+|||||||+ |..+..+|+.+.++.+|+|+|+|+.+++.|++.++. . +...+++|+++|+.+++...      
T Consensus        34 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~  111 (299)
T 3g5t_A           34 DGERKLLVDVGCGP-GTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEG-SPDTYKNVSFKISSSDDFKFLGADSVDK  111 (299)
T ss_dssp             CSCCSEEEEETCTT-THHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHH-CC-CCTTEEEEECCTTCCGGGCTTTTTS
T ss_pred             cCCCCEEEEECCCC-CHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHh-ccCCCCceEEEEcCHHhCCccccccccC
Confidence            36889999999996 666678886543799999999999999999999887 4 56789999999999987665      


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ++||+|+....++.-  +..++++++.+.|||||.|++
T Consensus       112 ~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          112 QKIDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             SCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEE
Confidence            689999976544322  788999999999999999988

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.56  E-value=3.7e-14  Score=123.93  Aligned_cols=105  Identities=12%  Similarity=0.039  Sum_probs=89.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..++.+|+. .++.+|+++|+|+++++.|++.++. .|+ ++++++++|+.+.......||+|+
T Consensus        38 ~~~~~~vLDiG~G~-G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~-~~~-~~v~~~~~d~~~~~~~~~~~D~i~  113 (204)
T 3e05_A           38 LQDDLVMWDIGAGS-ASVSIEASNL-MPNGRIFALERNPQYLGFIRDNLKK-FVA-RNVTLVEAFAPEGLDDLPDPDRVF  113 (204)
T ss_dssp             CCTTCEEEEETCTT-CHHHHHHHHH-CTTSEEEEEECCHHHHHHHHHHHHH-HTC-TTEEEEECCTTTTCTTSCCCSEEE
T ss_pred             CCCCCEEEEECCCC-CHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHH-hCC-CcEEEEeCChhhhhhcCCCCCEEE
Confidence            46789999999996 6667788876 4789999999999999999999987 777 789999999987655557899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .....    .+..++++++.+.|||||++++..
T Consensus       114 ~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~  142 (204)
T 3e05_A          114 IGGSG----GMLEEIIDAVDRRLKSEGVIVLNA  142 (204)
T ss_dssp             ESCCT----TCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             ECCCC----cCHHHHHHHHHHhcCCCeEEEEEe
Confidence            87633    367789999999999999999865

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.56  E-value=2e-14  Score=125.03  Aligned_cols=106  Identities=14%  Similarity=0.156  Sum_probs=88.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||++..+...+++   +|.+|+|+|+|+++++.|++.+.. .+  .+++++++|+.+++...+.||+|+.
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~-~~--~~~~~~~~d~~~~~~~~~~fD~v~~   95 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE---DGYKTYGIEISDLQLKKAENFSRE-NN--FKLNISKGDIRKLPFKDESMSFVYS   95 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH---TTCEEEEEECCHHHHHHHHHHHHH-HT--CCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHh-cC--CceEEEECchhhCCCCCCceeEEEE
Confidence            57899999999975555555554   588999999999999999998876 33  5799999999998766678999997


Q ss_pred             cc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .. +.+++.++..++++++++.|||||.+++..
T Consensus        96 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           96 YGTIFHMRKNDVKEAIDEIKRVLKPGGLACINF  128 (209)
T ss_dssp             CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            54 335566788999999999999999999876

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.56  E-value=5.4e-14  Score=128.88  Aligned_cols=106  Identities=6%  Similarity=0.026  Sum_probs=89.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..++.+|+++  |++|+|+|+|+++++.|++.+.. .|+..+++|+.+|+.+++   ++||+|+
T Consensus        62 ~~~~~~vLDiGcG~-G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~---~~fD~v~  134 (287)
T 1kpg_A           62 LQPGMTLLDVGCGW-GATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVAN-SENLRSKRVLLAGWEQFD---EPVDRIV  134 (287)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHT-CCCCSCEEEEESCGGGCC---CCCSEEE
T ss_pred             CCCcCEEEEECCcc-cHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHh-cCCCCCeEEEECChhhCC---CCeeEEE
Confidence            36778999999996 55566788654  77999999999999999999988 888889999999998876   6899998


Q ss_pred             ecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....+ +++.++..++++++++.|||||.+++..
T Consensus       135 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          135 SIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             EESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            65433 4444678999999999999999999866

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.56  E-value=1.6e-14  Score=132.60  Aligned_cols=107  Identities=17%  Similarity=0.184  Sum_probs=89.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-cCCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-SALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-~~l~~fD~V  197 (318)
                      ..++.+|||||||+ |..+..+++.   |++|+|+|+|+++++.|++.+.. .|+..+++|+++|+.+++ ...++||+|
T Consensus        66 ~~~~~~vLDiGcG~-G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~v  140 (285)
T 4htf_A           66 GPQKLRVLDAGGGE-GQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEA-KGVSDNMQFIHCAAQDVASHLETPVDLI  140 (285)
T ss_dssp             CSSCCEEEEETCTT-CHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC--CCGGGEEEEESCGGGTGGGCSSCEEEE
T ss_pred             CCCCCEEEEeCCcc-hHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHh-cCCCcceEEEEcCHHHhhhhcCCCceEE
Confidence            35578999999996 6666778873   88999999999999999999998 888889999999999987 455689999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +....+.. ..+..++++++++.|||||.+++..
T Consensus       141 ~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~~~~  173 (285)
T 4htf_A          141 LFHAVLEW-VADPRSVLQTLWSVLRPGGVLSLMF  173 (285)
T ss_dssp             EEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EECchhhc-ccCHHHHHHHHHHHcCCCeEEEEEE
Confidence            97654421 2466889999999999999998865

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.56  E-value=5.5e-15  Score=132.97  Aligned_cols=107  Identities=14%  Similarity=0.221  Sum_probs=91.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc----CcCC--CC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV----SSAL--KD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l----~~~l--~~  193 (318)
                      .++++||+|||| .|.+++.+|+.+.++++|+++|+|+++++.|++.++. .|+.++++|+++|+.+.    +...  +.
T Consensus        71 ~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~g~~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           71 TGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK-AGVAEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             HTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-HTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             cCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            467899999999 6899999998653388999999999999999999988 78888999999998653    2222  58


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ||+||+++    +.....++++++.+.|+|||++++.+.
T Consensus       149 fD~V~~d~----~~~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          149 FDLIFIDA----DKRNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             EEEEEECS----CGGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             cCEEEECC----CHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            99999887    357888999999999999999999873

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.55  E-value=1.7e-14  Score=133.67  Aligned_cols=108  Identities=10%  Similarity=0.126  Sum_probs=88.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC--CCeEEEEccccccCcCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS--TRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~--~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      ...+.+|||||||+ |..+..++++   |.+|+|+|+|+.+++.|++.+.. .+++  .+++|+++|+.+++. .+.||+
T Consensus        80 ~~~~~~vLDlGcG~-G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~v~~~~~d~~~~~~-~~~fD~  153 (299)
T 3g2m_A           80 GPVSGPVLELAAGM-GRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAE-APADVRDRCTLVQGDMSAFAL-DKRFGT  153 (299)
T ss_dssp             CCCCSCEEEETCTT-TTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHT-SCHHHHTTEEEEECBTTBCCC-SCCEEE
T ss_pred             CCCCCcEEEEeccC-CHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhh-cccccccceEEEeCchhcCCc-CCCcCE
Confidence            35566999999996 5666778763   88999999999999999999887 4433  789999999999876 468998


Q ss_pred             EEec-ccc-CCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          197 VFLA-ALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       197 V~~a-alv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |++. ... .++.++..++++++++.|||||+|++...
T Consensus       154 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          154 VVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA  191 (299)
T ss_dssp             EEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence            8854 222 33556789999999999999999999763

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.55  E-value=1.2e-14  Score=128.95  Aligned_cols=107  Identities=13%  Similarity=0.188  Sum_probs=90.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC------CC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL------KD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l------~~  193 (318)
                      .++++||+|||| .|.+++.+|+.+.++++|+++|+|+++++.|++.++. .|+..+++|+++|+.+....+      +.
T Consensus        68 ~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~i~~~~~d~~~~~~~~~~~~~~~~  145 (229)
T 2avd_A           68 IQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ-AEAEHKIDLRLKPALETLDELLAAGEAGT  145 (229)
T ss_dssp             TTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHH-TTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             cCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-CCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence            578999999999 5888899997543388999999999999999999998 888889999999997642221      58


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ||+||+++    +.....++++.+.+.|+|||++++.+.
T Consensus       146 ~D~v~~d~----~~~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          146 FDVAVVDA----DKENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             EEEEEECS----CSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccEEEECC----CHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence            99999886    345778899999999999999999773

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.55  E-value=2.4e-14  Score=123.18  Aligned_cols=105  Identities=17%  Similarity=0.268  Sum_probs=87.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.   |.+|+|+|+|+.+++.|++.+.. .++ .+++|+++|+.+++. .+.||+|+.
T Consensus        31 ~~~~~vLdiG~G~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~-~~~-~~~~~~~~d~~~~~~-~~~~D~v~~  103 (199)
T 2xvm_A           31 VKPGKTLDLGCGN-GRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSI-ENL-DNLHTRVVDLNNLTF-DRQYDFILS  103 (199)
T ss_dssp             SCSCEEEEETCTT-SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH-HTC-TTEEEEECCGGGCCC-CCCEEEEEE
T ss_pred             cCCCeEEEEcCCC-CHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHh-CCC-CCcEEEEcchhhCCC-CCCceEEEE
Confidence            5678999999996 6666778873   88999999999999999999876 555 469999999999876 568999987


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .... .++.++..++++++.+.|+|||.+++-+
T Consensus       104 ~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          104 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             ESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            6533 4456688999999999999999987654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.54  E-value=1.2e-14  Score=135.28  Aligned_cols=110  Identities=16%  Similarity=0.184  Sum_probs=92.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..++.+|....++++|+|+|+|+.+++.|++.+.. .|+.++++|+++|+.+++.+ +.||+|+
T Consensus       116 l~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~-~~fD~v~  192 (305)
T 3ocj_A          116 LRPGCVVASVPCGW-MSELLALDYSACPGVQLVGIDYDPEALDGATRLAAG-HALAGQITLHRQDAWKLDTR-EGYDLLT  192 (305)
T ss_dssp             CCTTCEEEETTCTT-CHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTT-STTGGGEEEEECCGGGCCCC-SCEEEEE
T ss_pred             CCCCCEEEEecCCC-CHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHh-cCCCCceEEEECchhcCCcc-CCeEEEE
Confidence            47889999999995 666677753335899999999999999999999998 88888999999999998876 7999999


Q ss_pred             ecc-ccCC-ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAA-LVGM-DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aa-lvgm-~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ... +.++ +.....++++++++.|||||.+++.+
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            755 3344 34455579999999999999999876

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.54  E-value=9.1e-14  Score=122.90  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=87.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..++.+|+.   +.+|+|+|+|+++++.|++.++. .|+.++++|+++|+.+.......||+|+
T Consensus        53 ~~~~~~vLDlGcG~-G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~-~g~~~~v~~~~~d~~~~~~~~~~~D~v~  127 (204)
T 3njr_A           53 PRRGELLWDIGGGS-GSVSVEWCLA---GGRAITIEPRADRIENIQKNIDT-YGLSPRMRAVQGTAPAALADLPLPEAVF  127 (204)
T ss_dssp             CCTTCEEEEETCTT-CHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEESCTTGGGTTSCCCSEEE
T ss_pred             CCCCCEEEEecCCC-CHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHH-cCCCCCEEEEeCchhhhcccCCCCCEEE
Confidence            46789999999996 6677788873   89999999999999999999988 8887799999999998544556899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +...  .   +.. +++++.+.|||||++++...
T Consensus       128 ~~~~--~---~~~-~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          128 IGGG--G---SQA-LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             ECSC--C---CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred             ECCc--c---cHH-HHHHHHHhcCCCcEEEEEec
Confidence            7762  2   334 99999999999999998763

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.54  E-value=1e-13  Score=119.85  Aligned_cols=109  Identities=9%  Similarity=0.072  Sum_probs=88.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC--CCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA--LKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~--l~~fD~V  197 (318)
                      .++.+|||+|||++ ..++.++++  +..+|+|+|+|+++++.|++.++. .++ ++++|+++|+.+++..  .+.||+|
T Consensus        43 ~~~~~vLDlgcG~G-~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~-~~~-~~v~~~~~d~~~~~~~~~~~~fD~i  117 (189)
T 3p9n_A           43 LTGLAVLDLYAGSG-ALGLEALSR--GAASVLFVESDQRSAAVIARNIEA-LGL-SGATLRRGAVAAVVAAGTTSPVDLV  117 (189)
T ss_dssp             CTTCEEEEETCTTC-HHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHH-HTC-SCEEEEESCHHHHHHHCCSSCCSEE
T ss_pred             CCCCEEEEeCCCcC-HHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHH-cCC-CceEEEEccHHHHHhhccCCCccEE
Confidence            57899999999964 555556653  456899999999999999999988 677 7899999999986432  3589999


Q ss_pred             EeccccCCChhHHHHHHHHHHH--hccCCeEEEEEcCC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAK--YMAPGALLMLRSAH  233 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r--~LkpGg~lv~r~~~  233 (318)
                      +.+...+...++..++++.+.+  .|+|||++++....
T Consensus       118 ~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          118 LADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             EECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            9875433334678899999999  99999999997643

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.54  E-value=1e-13  Score=128.44  Aligned_cols=106  Identities=7%  Similarity=-0.023  Sum_probs=89.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..++.+|+++  |++|+|+|+|+++++.|++.+.. .|+.++++|+++|+.++   .+.||+|+
T Consensus        70 ~~~~~~vLDiGcG~-G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~---~~~fD~v~  142 (302)
T 3hem_A           70 LEPGMTLLDIGCGW-GSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDE-VDSPRRKEVRIQGWEEF---DEPVDRIV  142 (302)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHH-SCCSSCEEEEECCGGGC---CCCCSEEE
T ss_pred             CCCcCEEEEeeccC-cHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEECCHHHc---CCCccEEE
Confidence            36788999999996 56667788764  69999999999999999999998 88988999999999887   45899998


Q ss_pred             ecccc-CC-------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV-GM-------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv-gm-------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....+ ++       ..+...++++++.+.|||||++++..
T Consensus       143 ~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          143 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             EESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             EcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            65433 44       22567899999999999999999876

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.54  E-value=1.7e-14  Score=130.39  Aligned_cols=104  Identities=9%  Similarity=0.094  Sum_probs=86.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..++++   +.+|+|+|+|+++++.|++.+.. .|+ .+++|+++|+.++++..++||+|+.
T Consensus        36 ~~~~~vLDiGcG~-G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~-~~~-~~v~~~~~d~~~l~~~~~~fD~V~~  109 (260)
T 1vl5_A           36 KGNEEVLDVATGG-GHVANAFAPF---VKKVVAFDLTEDILKVARAFIEG-NGH-QQVEYVQGDAEQMPFTDERFHIVTC  109 (260)
T ss_dssp             CSCCEEEEETCTT-CHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHH-TTC-CSEEEEECCC-CCCSCTTCEEEEEE
T ss_pred             CCCCEEEEEeCCC-CHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHh-cCC-CceEEEEecHHhCCCCCCCEEEEEE
Confidence            6789999999996 5666677764   45999999999999999999887 666 4799999999998877779999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ ++  .+..++++++++.|||||.|++.+
T Consensus       110 ~~~l~~~--~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          110 RIAAHHF--PNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             ESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhHhc--CCHHHHHHHHHHHcCCCCEEEEEE
Confidence            6433 43  467799999999999999998864

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.53  E-value=1.6e-13  Score=127.95  Aligned_cols=105  Identities=8%  Similarity=0.019  Sum_probs=90.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.+++.+  |++|+|+|+|+++++.|++.+.. .|+..+++|+++|+.+++   ++||+|+.
T Consensus        89 ~~~~~vLDiGcG~-G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~---~~fD~v~~  161 (318)
T 2fk8_A           89 KPGMTLLDIGCGW-GTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLAS-IDTNRSRQVLLQGWEDFA---EPVDRIVS  161 (318)
T ss_dssp             CTTCEEEEESCTT-SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHT-SCCSSCEEEEESCGGGCC---CCCSEEEE
T ss_pred             CCcCEEEEEcccc-hHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEECChHHCC---CCcCEEEE
Confidence            6778999999997 56667788764  88999999999999999999988 788889999999998875   58999986


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ +++.++..++++++.+.|||||++++..
T Consensus       162 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          162 IEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             ESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            5433 4455788999999999999999999866

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.53  E-value=6.6e-14  Score=121.26  Aligned_cols=112  Identities=11%  Similarity=0.063  Sum_probs=90.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V  197 (318)
                      ..++.+|||+|||+ |..++.+++++.++++|+|+|+|+++++.|++.++. .|+..+++|+++|+.+++. ..++||+|
T Consensus        20 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~v   97 (197)
T 3eey_A           20 VKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTD-LNLIDRVTLIKDGHQNMDKYIDCPVKAV   97 (197)
T ss_dssp             CCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHH-TTCGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred             CCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCCeEEEECCHHHHhhhccCCceEE
Confidence            36788999999996 566677887654668999999999999999999998 7888899999999988763 33589999


Q ss_pred             Eecccc-C-------CChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          198 FLAALV-G-------MDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       198 ~~aalv-g-------m~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +..... .       ....+..++++++.+.|||||++++...
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            865421 1       1234567899999999999999988753

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.53  E-value=2.8e-14  Score=129.94  Aligned_cols=108  Identities=17%  Similarity=0.260  Sum_probs=90.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++. .|+.+|+|+|+|+.+++.|++.+.. .|+ .+++|+++|+.+++...++||+|+.
T Consensus        36 ~~~~~vLDiG~G~-G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~~-~~~-~~~~~~~~d~~~~~~~~~~fD~v~~  111 (276)
T 3mgg_A           36 PPGAKVLEAGCGI-GAQTVILAKN-NPDAEITSIDISPESLEKARENTEK-NGI-KNVKFLQANIFSLPFEDSSFDHIFV  111 (276)
T ss_dssp             CTTCEEEETTCTT-SHHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHH-TTC-CSEEEEECCGGGCCSCTTCEEEEEE
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH-cCC-CCcEEEEcccccCCCCCCCeeEEEE
Confidence            6789999999996 5556677776 4899999999999999999999887 666 4799999999998877779999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ...+. ...+..++++++.+.|||||.+++.+.
T Consensus       112 ~~~l~-~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A          112 CFVLE-HLQSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             ESCGG-GCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             echhh-hcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            65442 124566899999999999999998763

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.53  E-value=1e-13  Score=117.30  Aligned_cols=104  Identities=15%  Similarity=0.136  Sum_probs=85.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCcCCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSSALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~~l~~fD~V  197 (318)
                      ..++.+|||||||+ |..++.+|+.+ ++++|+++|+|+++++.|++.+.. .|+..++ ++++|+.+ ++...+.||+|
T Consensus        23 ~~~~~~vldiG~G~-G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~-~~~~d~~~~~~~~~~~~D~i   98 (178)
T 3hm2_A           23 PKPHETLWDIGGGS-GSIAIEWLRST-PQTTAVCFEISEERRERILSNAIN-LGVSDRI-AVQQGAPRAFDDVPDNPDVI   98 (178)
T ss_dssp             CCTTEEEEEESTTT-THHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHT-TTCTTSE-EEECCTTGGGGGCCSCCSEE
T ss_pred             ccCCCeEEEeCCCC-CHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHH-hCCCCCE-EEecchHhhhhccCCCCCEE
Confidence            36778999999996 66777788754 899999999999999999999988 8887789 88999865 33322689999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++....+.     .++++++.+.|+|||.+++..
T Consensus        99 ~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~  127 (178)
T 3hm2_A           99 FIGGGLTA-----PGVFAAAWKRLPVGGRLVANA  127 (178)
T ss_dssp             EECC-TTC-----TTHHHHHHHTCCTTCEEEEEE
T ss_pred             EECCcccH-----HHHHHHHHHhcCCCCEEEEEe
Confidence            97764431     679999999999999999866

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.52  E-value=7.9e-14  Score=125.35  Aligned_cols=102  Identities=11%  Similarity=0.071  Sum_probs=84.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++.+|||||||+ |..+..+++.   +. +|+|+|+|+++++.|++...     ..+++|+++|+.+++...++||+|+
T Consensus        43 ~~~~~vLD~GcG~-G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v~  113 (253)
T 3g5l_A           43 FNQKTVLDLGCGF-GWHCIYAAEH---GAKKVLGIDLSERMLTEAKRKTT-----SPVVCYEQKAIEDIAIEPDAYNVVL  113 (253)
T ss_dssp             CTTCEEEEETCTT-CHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHCC-----CTTEEEEECCGGGCCCCTTCEEEEE
T ss_pred             cCCCEEEEECCCC-CHHHHHHHHc---CCCEEEEEECCHHHHHHHHHhhc-----cCCeEEEEcchhhCCCCCCCeEEEE
Confidence            4789999999996 5566677764   44 99999999999999998765     3789999999999887667999999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....+. ..++..++++++++.|||||.+++..
T Consensus       114 ~~~~l~-~~~~~~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          114 SSLALH-YIASFDDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             EESCGG-GCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Echhhh-hhhhHHHHHHHHHHHcCCCcEEEEEe
Confidence            765442 12577899999999999999999864

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.52  E-value=7.8e-14  Score=122.29  Aligned_cols=103  Identities=20%  Similarity=0.265  Sum_probs=84.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.   +.+|+|+|+|+++++.|++.... .   .+++|+++|+.+++ ..++||+|+.
T Consensus        50 ~~~~~vLDiGcG~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~-~---~~~~~~~~d~~~~~-~~~~fD~v~~  120 (216)
T 3ofk_A           50 GAVSNGLEIGCAA-GAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKR-W---SHISWAATDILQFS-TAELFDLIVV  120 (216)
T ss_dssp             SSEEEEEEECCTT-SHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTT-C---SSEEEEECCTTTCC-CSCCEEEEEE
T ss_pred             CCCCcEEEEcCCC-CHHHHHHHHc---CCEEEEEECCHHHHHHHHHhccc-C---CCeEEEEcchhhCC-CCCCccEEEE
Confidence            5678999999996 5555677763   68999999999999999998876 2   38999999999987 4568999997


Q ss_pred             cccc-CCC-hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMD-KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~-~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ +++ .+...++++++++.|||||.+++..
T Consensus       121 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          121 AEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             ESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            6533 443 3556789999999999999999865

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.52  E-value=1.7e-13  Score=120.22  Aligned_cols=101  Identities=10%  Similarity=0.111  Sum_probs=84.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..++++   +++|+|+|+|+.+++.|++...      .+++|+++|+.+++.. ++||+|+.
T Consensus        44 ~~~~~vLDiGcG~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~~~~~~~-~~fD~v~~  112 (220)
T 3hnr_A           44 KSFGNVLEFGVGT-GNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP------KEFSITEGDFLSFEVP-TSIDTIVS  112 (220)
T ss_dssp             TCCSEEEEECCTT-SHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC------TTCCEESCCSSSCCCC-SCCSEEEE
T ss_pred             cCCCeEEEeCCCC-CHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC------CceEEEeCChhhcCCC-CCeEEEEE
Confidence            5788999999996 5666677763   8899999999999999988754      5789999999998776 89999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++..++.++++++++.|||||.+++.+
T Consensus       113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            6544 4455566669999999999999999875

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.52  E-value=3e-14  Score=128.28  Aligned_cols=103  Identities=13%  Similarity=0.095  Sum_probs=87.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC---CCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA---LKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~---l~~fD~  196 (318)
                      .++.+|||||||+ |..++.+|+. .++++|+|||+|+++++.|++.++. .|+. +++|+++|+.+++..   .+.||+
T Consensus        69 ~~~~~vLDiG~G~-G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~-~v~~~~~d~~~~~~~~~~~~~fD~  144 (240)
T 1xdz_A           69 NQVNTICDVGAGA-GFPSLPIKIC-FPHLHVTIVDSLNKRITFLEKLSEA-LQLE-NTTFCHDRAETFGQRKDVRESYDI  144 (240)
T ss_dssp             GGCCEEEEECSSS-CTTHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHH-HTCS-SEEEEESCHHHHTTCTTTTTCEEE
T ss_pred             CCCCEEEEecCCC-CHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHH-cCCC-CEEEEeccHHHhcccccccCCccE
Confidence            4678999999995 7777888864 3789999999999999999999988 6774 599999999988643   358999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+..++     .+..++++.+.+.|+|||.+++-.
T Consensus       145 V~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          145 VTARAV-----ARLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             EEEECC-----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEecc-----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            998763     357889999999999999998854

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.51  E-value=5.4e-14  Score=125.91  Aligned_cols=107  Identities=7%  Similarity=0.049  Sum_probs=85.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc--CcCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV--SSALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l--~~~l~~fD~  196 (318)
                      ..++.+|||||||+ |..+..+++.  ...+|+|+|+|+++++.|++..+. .+  .+++|+++|+.++  +...++||+
T Consensus        58 ~~~~~~vLDiGcGt-G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~-~~--~~v~~~~~d~~~~~~~~~~~~fD~  131 (236)
T 1zx0_A           58 SSKGGRVLEVGFGM-AIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPR-QT--HKVIPLKGLWEDVAPTLPDGHFDG  131 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGG-CS--SEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             CCCCCeEEEEeccC-CHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHh-cC--CCeEEEecCHHHhhcccCCCceEE
Confidence            36788999999996 5666677752  345999999999999999998887 44  7899999999988  666678999


Q ss_pred             EEecccc----CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALV----GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalv----gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+.+.+.    ......+..++++++++|||||++++-+
T Consensus       132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            9872211    1134567789999999999999999866

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.51  E-value=3.6e-14  Score=126.64  Aligned_cols=105  Identities=20%  Similarity=0.291  Sum_probs=89.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc-CcC--CCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV-SSA--LKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l-~~~--l~~fD~  196 (318)
                      .++.+||+||||+ |..++.+|+.+ |+.+|+++|+|+++++.|++.+.. .|+..+++|+.+|+.+. +..  .+.||+
T Consensus        53 ~~~~~vLdiG~G~-G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~fD~  129 (233)
T 2gpy_A           53 AAPARILEIGTAI-GYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKA-LGLESRIELLFGDALQLGEKLELYPLFDV  129 (233)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHH-TTCTTTEEEECSCGGGSHHHHTTSCCEEE
T ss_pred             cCCCEEEEecCCC-cHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEECCHHHHHHhcccCCCccE
Confidence            5778999999995 77778888764 789999999999999999999998 88888999999999874 322  358999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |++++.    .....++++.+.+.|+|||++++.+
T Consensus       130 I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          130 LFIDAA----KGQYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             EEEEGG----GSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred             EEECCC----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            998773    2467889999999999999999976

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.51  E-value=2.7e-13  Score=121.56  Aligned_cols=104  Identities=13%  Similarity=0.251  Sum_probs=85.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.+++.   |.+|+|+|+|+++++.|++.... .+  .+++|+++|+.+++.. ++||+|++
T Consensus        40 ~~~~~vLDlGcG~-G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~-~~--~~v~~~~~d~~~~~~~-~~fD~v~~  111 (252)
T 1wzn_A           40 REVRRVLDLACGT-GIPTLELAER---GYEVVGLDLHEEMLRVARRKAKE-RN--LKIEFLQGDVLEIAFK-NEFDAVTM  111 (252)
T ss_dssp             SCCCEEEEETCTT-CHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH-TT--CCCEEEESCGGGCCCC-SCEEEEEE
T ss_pred             cCCCEEEEeCCCC-CHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHh-cC--CceEEEECChhhcccC-CCccEEEE
Confidence            5678999999996 5555677763   88999999999999999999887 44  3799999999987644 58999985


Q ss_pred             c--cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 A--ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 a--alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .  .+..++.++..++++++++.|+|||.+++..
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            3  3333456788899999999999999998754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.51  E-value=3.8e-14  Score=127.32  Aligned_cols=106  Identities=18%  Similarity=0.207  Sum_probs=89.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC---------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA---------  190 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~---------  190 (318)
                      .++++||+||||. |..++.+|+.+.++++|+++|+|+++++.|++.++. .|+..+++|+++|+.+....         
T Consensus        59 ~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~v~~~~~d~~~~~~~~~~~~~~~~  136 (239)
T 2hnk_A           59 SGAKRIIEIGTFT-GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE-NGLENKIFLKLGSALETLQVLIDSKSAPS  136 (239)
T ss_dssp             HTCSEEEEECCTT-CHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH-TTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred             hCcCEEEEEeCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence            5788999999995 788888998653388999999999999999999988 78878899999999763111         


Q ss_pred             -------C-CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 -------L-KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 -------l-~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                             . +.||+||+++    ......++++.+.+.|+|||++++.+
T Consensus       137 ~~~~f~~~~~~fD~I~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          137 WASDFAFGPSSIDLFFLDA----DKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GGTTTCCSTTCEEEEEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccccCCCCCcCEEEEeC----CHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence                   1 5799999876    34677789999999999999999976

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.51  E-value=5.2e-14  Score=130.89  Aligned_cols=109  Identities=16%  Similarity=0.193  Sum_probs=84.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC-------------------------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS-------------------------  174 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~-------------------------  174 (318)
                      .++++|||||||+ |..++.+|+++ ++.+|+|||+|+.+++.|++.+.. .+..                         
T Consensus        45 ~~~~~VLDiGCG~-G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (292)
T 3g07_A           45 FRGRDVLDLGCNV-GHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRH-YLSEELRLPPQTLEGDPGAEGEEGTTTVR  121 (292)
T ss_dssp             TTTSEEEEESCTT-CHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC--------------------------------
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHh-hhhhhcccccccccccccccccccccccc
Confidence            3689999999996 66667888764 789999999999999999998775 4322                         


Q ss_pred             --------------------------------CCeEEEEccccccC-----cCCCCccEEEecccc-CC----ChhHHHH
Q 021008          175 --------------------------------TRMFFHTTDIMNVS-----SALKDYEVVFLAALV-GM----DKDEKIR  212 (318)
Q Consensus       175 --------------------------------~ri~f~~gDa~~l~-----~~l~~fD~V~~aalv-gm----~~~~k~~  212 (318)
                                                      .+++|+++|..+.+     ...+.||+|+..... ++    ..+...+
T Consensus       122 ~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~  201 (292)
T 3g07_A          122 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKR  201 (292)
T ss_dssp             --------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence                                            68999999998643     345689999976643 11    2357889


Q ss_pred             HHHHHHHhccCCeEEEEEc
Q 021008          213 VIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       213 vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++++++++|+|||.|++..
T Consensus       202 ~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          202 MFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCcEEEEec
Confidence            9999999999999999964

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.50  E-value=9e-14  Score=127.56  Aligned_cols=104  Identities=13%  Similarity=0.180  Sum_probs=87.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||. |..++.+++.   |.+|+|+|+|+.+++.|++.+.. .|+  +++|+++|+.+++. .+.||+|+.
T Consensus       119 ~~~~~vLD~GcG~-G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~-~~~--~~~~~~~d~~~~~~-~~~fD~i~~  190 (286)
T 3m70_A          119 ISPCKVLDLGCGQ-GRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEK-ENL--NISTALYDINAANI-QENYDFIVS  190 (286)
T ss_dssp             SCSCEEEEESCTT-CHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH-TTC--CEEEEECCGGGCCC-CSCEEEEEE
T ss_pred             cCCCcEEEECCCC-CHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHH-cCC--ceEEEEeccccccc-cCCccEEEE
Confidence            5789999999996 5666778873   88999999999999999999987 565  89999999999765 568999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .... +++.+...++++++.+.|+|||.+++-.
T Consensus       191 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             CSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            6533 4466778899999999999999976644

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.50  E-value=3.6e-14  Score=123.64  Aligned_cols=102  Identities=12%  Similarity=0.074  Sum_probs=85.7

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      ++.+|||||||+ |..++.+++.+ ++.+|+++|+|+.+++.|++.+.. .|+.. ++|+++|+.+.+ ..++||+|+..
T Consensus        65 ~~~~vLDiG~G~-G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~-v~~~~~d~~~~~-~~~~~D~i~~~  139 (207)
T 1jsx_A           65 QGERFIDVGTGP-GLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHE-LKLEN-IEPVQSRVEEFP-SEPPFDGVISR  139 (207)
T ss_dssp             CSSEEEEETCTT-TTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH-TTCSS-EEEEECCTTTSC-CCSCEEEEECS
T ss_pred             CCCeEEEECCCC-CHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH-cCCCC-eEEEecchhhCC-ccCCcCEEEEe
Confidence            478999999996 56667788754 899999999999999999999988 77754 999999999875 33589999966


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++     .+..++++.+.+.|+|||.+++..+
T Consensus       140 ~~-----~~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          140 AF-----ASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             CS-----SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             cc-----CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            53     3567899999999999999988753

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.50  E-value=5.9e-14  Score=125.87  Aligned_cols=109  Identities=14%  Similarity=0.138  Sum_probs=87.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc-C--cCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV-S--SALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l-~--~~l~~fD~  196 (318)
                      ..+.+|||||||. |..++.+|+.+ |++.|+|||+++++++.|++.+.. .|+ .+++|+++|+.++ +  ...++||.
T Consensus        33 ~~~~~vLDiGcG~-G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~-~~l-~nv~~~~~Da~~~l~~~~~~~~~d~  108 (218)
T 3dxy_A           33 REAPVTLEIGFGM-GASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHE-EGL-SNLRVMCHDAVEVLHKMIPDNSLRM  108 (218)
T ss_dssp             SCCCEEEEESCTT-CHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH-TTC-SSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred             CCCCeEEEEeeeC-hHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHH-hCC-CcEEEEECCHHHHHHHHcCCCChhe
Confidence            5678999999995 77778888764 899999999999999999999987 777 4599999999885 2  34568999


Q ss_pred             EEeccccCCCh-hH-H-----HHHHHHHHHhccCCeEEEEEcC
Q 021008          197 VFLAALVGMDK-DE-K-----IRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       197 V~~aalvgm~~-~~-k-----~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |++..-..+++ .. |     ..++++++++|||||.|++...
T Consensus       109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence            98653233322 11 1     2599999999999999998774

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.50  E-value=1e-13  Score=126.89  Aligned_cols=103  Identities=11%  Similarity=0.051  Sum_probs=87.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC---CCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA---LKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~---l~~fD~  196 (318)
                      .++.+|||||||+ |..++.+|..+ |+++|++||+|+++++.|+++++. .|+. +++|+++|+.+++..   .++||+
T Consensus        79 ~~~~~vLDiG~G~-G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~-~~l~-~v~~~~~d~~~~~~~~~~~~~fD~  154 (249)
T 3g89_A           79 QGPLRVLDLGTGA-GFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEV-LGLK-GARALWGRAEVLAREAGHREAYAR  154 (249)
T ss_dssp             CSSCEEEEETCTT-TTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHH-HTCS-SEEEEECCHHHHTTSTTTTTCEEE
T ss_pred             CCCCEEEEEcCCC-CHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH-hCCC-ceEEEECcHHHhhcccccCCCceE
Confidence            4678999999995 78888899764 899999999999999999999998 7885 499999999988653   258999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+..++     .+...+++.+.+.|||||++++-.
T Consensus       155 I~s~a~-----~~~~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          155 AVARAV-----APLCVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             EEEESS-----CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEECCc-----CCHHHHHHHHHHHcCCCeEEEEEe
Confidence            998764     245789999999999999988754

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.50  E-value=1.4e-13  Score=119.42  Aligned_cols=103  Identities=13%  Similarity=0.164  Sum_probs=86.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++ +|||||||+ |..+..+++.   |.+|+|+|+|+.+++.|++.... .+.  +++|+++|+.+++...+.||+|+.
T Consensus        29 ~~~-~vLdiGcG~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~-~~~--~~~~~~~d~~~~~~~~~~fD~v~~  100 (202)
T 2kw5_A           29 PQG-KILCLAEGE-GRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQE-KGV--KITTVQSNLADFDIVADAWEGIVS  100 (202)
T ss_dssp             CSS-EEEECCCSC-THHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHH-HTC--CEEEECCBTTTBSCCTTTCSEEEE
T ss_pred             CCC-CEEEECCCC-CHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHh-cCC--ceEEEEcChhhcCCCcCCccEEEE
Confidence            445 999999996 5666778763   78999999999999999999876 444  899999999998766668999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      . +..++.++..++++++.+.|+|||.+++..
T Consensus       101 ~-~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A          101 I-FCHLPSSLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             E-CCCCCHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             E-hhcCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            4 455566788999999999999999998876

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.50  E-value=2.4e-13  Score=119.92  Aligned_cols=109  Identities=14%  Similarity=0.081  Sum_probs=87.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~V  197 (318)
                      .++.+|||||||. |..++.+|+.+ |+++|+|||+|+++++.|++.+.. .|+ .+++|+++|+.+++  ...+.||+|
T Consensus        40 ~~~~~vLDiGcG~-G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~-~~~-~~v~~~~~d~~~~~~~~~~~~~D~i  115 (214)
T 1yzh_A           40 NDNPIHVEVGSGK-GAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLE-VGV-PNIKLLWVDGSDLTDYFEDGEIDRL  115 (214)
T ss_dssp             SCCCEEEEESCTT-SHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH-HCC-SSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred             CCCCeEEEEccCc-CHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHH-cCC-CCEEEEeCCHHHHHhhcCCCCCCEE
Confidence            5678999999995 66667788764 899999999999999999999887 677 78999999999876  344589999


Q ss_pred             EeccccCCCh--h-----HHHHHHHHHHHhccCCeEEEEEcC
Q 021008          198 FLAALVGMDK--D-----EKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       198 ~~aalvgm~~--~-----~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++..-.++.+  .     ...++++++.+.|+|||.+++...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          116 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             EEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence            9764322211  0     125799999999999999998763

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.50  E-value=1.9e-13  Score=120.23  Aligned_cols=107  Identities=24%  Similarity=0.336  Sum_probs=89.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC----CCCeEEEEccccccCcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL----STRMFFHTTDIMNVSSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl----~~ri~f~~gDa~~l~~~l~~fD  195 (318)
                      .++.+|||||||+ |..++.+++.   +++|+|+|+|+.+++.|++.... .++    ..+++|+++|+.+++...+.||
T Consensus        29 ~~~~~vLdiG~G~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  103 (235)
T 3sm3_A           29 QEDDEILDIGCGS-GKISLELASK---GYSVTGIDINSEAIRLAETAARS-PGLNQKTGGKAEFKVENASSLSFHDSSFD  103 (235)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTC-CSCCSSSSCEEEEEECCTTSCCSCTTCEE
T ss_pred             CCCCeEEEECCCC-CHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHh-cCCccccCcceEEEEecccccCCCCCcee
Confidence            6789999999996 6666778863   88999999999999999999887 665    3479999999999887667999


Q ss_pred             EEEecccc-CC-ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALV-GM-DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalv-gm-~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+....+ .+ +...+.++++++.+.|||||++++.+
T Consensus       104 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          104 FAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            99976544 44 34556699999999999999998875

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.50  E-value=1.7e-13  Score=121.72  Aligned_cols=109  Identities=11%  Similarity=0.070  Sum_probs=86.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~V  197 (318)
                      .++.+|||||||+ |..++.+|+.+ |++.|+|||+|+++++.|++.+.. .|+ .+++|+++|+.+++  ...+.||.|
T Consensus        37 ~~~~~vLDiGcG~-G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~-~~~-~nv~~~~~d~~~l~~~~~~~~~d~v  112 (213)
T 2fca_A           37 NDNPIHIEVGTGK-GQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKD-SEA-QNVKLLNIDADTLTDVFEPGEVKRV  112 (213)
T ss_dssp             SCCCEEEEECCTT-SHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH-SCC-SSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred             CCCceEEEEecCC-CHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHH-cCC-CCEEEEeCCHHHHHhhcCcCCcCEE
Confidence            5678999999996 66667888764 899999999999999999999887 676 57999999999865  344589998


Q ss_pred             EeccccCCChh-------HHHHHHHHHHHhccCCeEEEEEcC
Q 021008          198 FLAALVGMDKD-------EKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       198 ~~aalvgm~~~-------~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++..-..+.+.       ...+++++++++|+|||.|++...
T Consensus       113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td  154 (213)
T 2fca_A          113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  154 (213)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             EEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence            86432222211       136799999999999999998763

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.50  E-value=7.5e-14  Score=128.68  Aligned_cols=108  Identities=14%  Similarity=0.144  Sum_probs=89.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.+++.+..+++|+|+|+|+.+++.|++.+.. .+  .+++|+++|+.+++.+ ++||+|+.
T Consensus        21 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~--~~v~~~~~d~~~~~~~-~~fD~v~~   95 (284)
T 3gu3_A           21 TKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-LP--YDSEFLEGDATEIELN-DKYDIAIC   95 (284)
T ss_dssp             CSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS-SS--SEEEEEESCTTTCCCS-SCEEEEEE
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh-cC--CceEEEEcchhhcCcC-CCeeEEEE
Confidence            6789999999996 666778887652269999999999999999999887 34  3899999999998763 58999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ...++ ...+..++++++++.|||||.+++.+.+
T Consensus        96 ~~~l~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           96 HAFLL-HMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ESCGG-GCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CChhh-cCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            66443 2256679999999999999999987654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.49  E-value=2.4e-13  Score=130.18  Aligned_cols=107  Identities=11%  Similarity=0.205  Sum_probs=91.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc--CcCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV--SSALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l--~~~l~~fD~V  197 (318)
                      ..+.+|||||||+ |..++.+++++ |+.+++++|+ |++++.|++.+.. .|+.++++|+.+|..+.  |.. ++||+|
T Consensus       178 ~~~~~vlDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~p-~~~D~v  252 (363)
T 3dp7_A          178 HHPKRLLDIGGNT-GKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAG-LSGSERIHGHGANLLDRDVPFP-TGFDAV  252 (363)
T ss_dssp             GCCSEEEEESCTT-CHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTT-CTTGGGEEEEECCCCSSSCCCC-CCCSEE
T ss_pred             cCCCEEEEeCCCc-CHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHh-cCcccceEEEEccccccCCCCC-CCcCEE
Confidence            5779999999996 66677888775 8999999999 9999999999988 78888999999999874  223 589999


Q ss_pred             Eecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++...+ .++.++..++++++++.|||||+|++.+
T Consensus       253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          253 WMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             EEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            976654 4566777899999999999999998866

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.49  E-value=4.3e-13  Score=124.29  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=83.8

Q ss_pred             CCCCEEEEEccCC--ChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---------
Q 021008          120 RFPTKIAFIGSGP--LPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---------  188 (318)
Q Consensus       120 ~~~~rVL~IGsGp--lp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---------  188 (318)
                      ...++|||||||+  .|..+..+++. .|+++|++||+||.+++.|++++..    ..+++|+++|+.+..         
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~----~~~v~~~~~D~~~~~~~~~~~~~~  150 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAK----DPNTAVFTADVRDPEYILNHPDVR  150 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTT----CTTEEEEECCTTCHHHHHHSHHHH
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCC----CCCeEEEEeeCCCchhhhccchhh
Confidence            3458999999995  04444445543 4899999999999999999998753    368999999997631         


Q ss_pred             --cCCCCccEEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          189 --SALKDYEVVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       189 --~~l~~fD~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                        .+..+||+|++...+ .++.++..++++++++.|+|||.|++...
T Consensus       151 ~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~  197 (274)
T 2qe6_A          151 RMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL  197 (274)
T ss_dssp             HHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence              233589999876544 44545688999999999999999998773

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.49  E-value=5.7e-13  Score=116.97  Aligned_cols=106  Identities=16%  Similarity=0.130  Sum_probs=86.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||++ ..+..+++.   +.+|+|+|+|+++++.|++.... .+  .+++|+++|+.+++...++||+|+.
T Consensus        37 ~~~~~vLDlG~G~G-~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~-~~--~~~~~~~~d~~~~~~~~~~~D~v~~  109 (227)
T 1ve3_A           37 KKRGKVLDLACGVG-GFSFLLEDY---GFEVVGVDISEDMIRKAREYAKS-RE--SNVEFIVGDARKLSFEDKTFDYVIF  109 (227)
T ss_dssp             CSCCEEEEETCTTS-HHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH-TT--CCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEEeccCC-HHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHh-cC--CCceEEECchhcCCCCCCcEEEEEE
Confidence            45889999999975 555677764   45999999999999999999887 44  7899999999988755568999987


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .... ..+..+..++++++++.|+|||.+++...
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          110 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            6531 23556788999999999999999988763

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.48  E-value=1.1e-13  Score=123.89  Aligned_cols=106  Identities=9%  Similarity=0.149  Sum_probs=86.8

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      ++.+|||||||+ |..+..++++.  +.+|+|+|+|+.+++.|++.+.. .+ ..+++|+++|+.+++...+.||+|+..
T Consensus        79 ~~~~vLDiGcG~-G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~  153 (241)
T 2ex4_A           79 GTSCALDCGAGI-GRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGE-EG-KRVRNYFCCGLQDFTPEPDSYDVIWIQ  153 (241)
T ss_dssp             CCSEEEEETCTT-THHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGG-GG-GGEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred             CCCEEEEECCCC-CHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhh-cC-CceEEEEEcChhhcCCCCCCEEEEEEc
Confidence            589999999996 56666677642  67999999999999999999876 43 467999999999887666689999976


Q ss_pred             ccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          201 ALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       201 alv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+ .++.+...++++++.+.|||||.+++.+
T Consensus       154 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  185 (241)
T 2ex4_A          154 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  185 (241)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            533 4454556799999999999999999866

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.47  E-value=1.6e-13  Score=123.02  Aligned_cols=105  Identities=10%  Similarity=0.146  Sum_probs=87.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..+..+++.   +.+|+|+|+|+.+++.|++.+.. .|+ .+++|+++|+.+++...++||+|+
T Consensus        19 ~~~~~~vLDiGcG~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~-~~~-~~v~~~~~d~~~~~~~~~~fD~v~   92 (239)
T 1xxl_A           19 CRAEHRVLDIGAGA-GHTALAFSPY---VQECIGVDATKEMVEVASSFAQE-KGV-ENVRFQQGTAESLPFPDDSFDIIT   92 (239)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHH-HTC-CSEEEEECBTTBCCSCTTCEEEEE
T ss_pred             cCCCCEEEEEccCc-CHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHH-cCC-CCeEEEecccccCCCCCCcEEEEE
Confidence            47889999999996 6666778764   56999999999999999999877 565 479999999999887767999999


Q ss_pred             ecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..... ++  .+..+++++++++|||||.+++.+
T Consensus        93 ~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           93 CRYAAHHF--SDVRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCchhhc--cCHHHHHHHHHHHcCCCcEEEEEE
Confidence            76433 33  467889999999999999998865

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.47  E-value=5.4e-13  Score=121.84  Aligned_cols=109  Identities=12%  Similarity=0.116  Sum_probs=89.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V  197 (318)
                      ..++.+|||||||++.++ ..+++.  +..+|+|+|+|+.+++.|++.... .++..+++|+++|+.+++. ..+.||+|
T Consensus        62 ~~~~~~vLDiGcG~G~~~-~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~v  137 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDL-LKYERA--GIGEYYGVDIAEVSINDARVRARN-MKRRFKVFFRAQDSYGRHMDLGKEFDVI  137 (298)
T ss_dssp             CCTTCEEEEETCTTTTTH-HHHHHH--TCSEEEEEESCHHHHHHHHHHHHT-SCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             CCCCCeEEEECCCCCHHH-HHHHHC--CCCEEEEEECCHHHHHHHHHHHHh-cCCCccEEEEECCccccccCCCCCcCEE
Confidence            367899999999975555 457764  355999999999999999999987 7777899999999998876 35589999


Q ss_pred             EeccccC---CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVG---MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvg---m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +....++   .+.++..++++++.+.|||||.+++..
T Consensus       138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9764332   246788899999999999999999865

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=4.8e-13  Score=119.64  Aligned_cols=103  Identities=10%  Similarity=0.013  Sum_probs=83.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-----CCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-----KDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-----~~f  194 (318)
                      .++.+|||||||+ |..+..+|+.   +.+|+|+|+|+.+++.|++....     .+++|+++|+.+++...     ..|
T Consensus        55 ~~~~~vLD~GcG~-G~~~~~la~~---~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~  125 (245)
T 3ggd_A           55 NPELPLIDFACGN-GTQTKFLSQF---FPRVIGLDVSKSALEIAAKENTA-----ANISYRLLDGLVPEQAAQIHSEIGD  125 (245)
T ss_dssp             CTTSCEEEETCTT-SHHHHHHHHH---SSCEEEEESCHHHHHHHHHHSCC-----TTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHHh---CCCEEEEECCHHHHHHHHHhCcc-----cCceEEECcccccccccccccccCc
Confidence            6778999999996 6666788875   44999999999999999988743     58999999999864322     148


Q ss_pred             cEEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+..... .++.++..++++++++.|||||.+++.+
T Consensus       126 d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          126 ANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             CEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             cEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            999977655 4456688999999999999999987765

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.47  E-value=3.1e-13  Score=121.28  Aligned_cols=103  Identities=12%  Similarity=0.109  Sum_probs=84.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..++++   +.+|+|+|+|+++++.|++.+..   ...+++|+++|+.+++...++||+|+.
T Consensus        38 ~~~~~vLDiG~G~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~~~~~~fD~v~~  110 (263)
T 2yqz_A           38 GEEPVFLELGVGT-GRIALPLIAR---GYRYIALDADAAMLEVFRQKIAG---VDRKVQVVQADARAIPLPDESVHGVIV  110 (263)
T ss_dssp             SSCCEEEEETCTT-STTHHHHHTT---TCEEEEEESCHHHHHHHHHHTTT---SCTTEEEEESCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEeCCcC-CHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhhc---cCCceEEEEcccccCCCCCCCeeEEEE
Confidence            6789999999997 5555677763   78999999999999999998732   347899999999998766678999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      ...++. ..+..++++++++.|||||.+++.
T Consensus       111 ~~~l~~-~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          111 VHLWHL-VPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             ESCGGG-CTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCchhh-cCCHHHHHHHHHHHCCCCcEEEEE
Confidence            654422 236788999999999999998875

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.47  E-value=6.9e-13  Score=118.62  Aligned_cols=105  Identities=9%  Similarity=0.087  Sum_probs=87.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..++++.  ..+|+++|+|+.+++.|++.+.. .   .+++|+++|+.+++...+.||+|+.
T Consensus        92 ~~~~~vLDiG~G~-G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-~---~~~~~~~~d~~~~~~~~~~fD~v~~  164 (254)
T 1xtp_A           92 HGTSRALDCGAGI-GRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAG-M---PVGKFILASMETATLPPNTYDLIVI  164 (254)
T ss_dssp             CCCSEEEEETCTT-THHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTT-S---SEEEEEESCGGGCCCCSSCEEEEEE
T ss_pred             cCCCEEEEECCCc-CHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhcc-C---CceEEEEccHHHCCCCCCCeEEEEE
Confidence            5789999999996 55556677653  56899999999999999998875 2   6899999999998766678999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ +++.++..++++++++.|||||.+++..
T Consensus       165 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  197 (254)
T 1xtp_A          165 QWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            6543 4455678999999999999999999876

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.47  E-value=2.4e-13  Score=120.73  Aligned_cols=102  Identities=11%  Similarity=0.138  Sum_probs=85.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.   |++|+|+|+|+.+++.|++....     .+++|+++|+.+++...++||+|+.
T Consensus        52 ~~~~~vLDiG~G~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~  122 (242)
T 3l8d_A           52 KKEAEVLDVGCGD-GYGTYKLSRT---GYKAVGVDISEVMIQKGKERGEG-----PDLSFIKGDLSSLPFENEQFEAIMA  122 (242)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHHHT---TCEEEEEESCHHHHHHHHTTTCB-----TTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHHc---CCeEEEEECCHHHHHHHHhhccc-----CCceEEEcchhcCCCCCCCccEEEE
Confidence            5788999999996 5666777763   88999999999999999887533     7899999999998876779999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+. ...+..++++++++.|+|||.+++..
T Consensus       123 ~~~l~-~~~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          123 INSLE-WTEEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             ESCTT-SSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cChHh-hccCHHHHHHHHHHHhCCCeEEEEEE
Confidence            65442 23567789999999999999998876

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.47  E-value=6.3e-14  Score=129.20  Aligned_cols=98  Identities=16%  Similarity=0.105  Sum_probs=80.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+.+|||||||+ |..+..|++   .+.+|+|+|+|+++++.|++        ..+++|+++|+.+++...++||+|+.
T Consensus        38 ~~~~~vLDvGcGt-G~~~~~l~~---~~~~v~gvD~s~~ml~~a~~--------~~~v~~~~~~~e~~~~~~~sfD~v~~  105 (257)
T 4hg2_A           38 PARGDALDCGCGS-GQASLGLAE---FFERVHAVDPGEAQIRQALR--------HPRVTYAVAPAEDTGLPPASVDVAIA  105 (257)
T ss_dssp             SCSSEEEEESCTT-TTTHHHHHT---TCSEEEEEESCHHHHHTCCC--------CTTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEcCCC-CHHHHHHHH---hCCEEEEEeCcHHhhhhhhh--------cCCceeehhhhhhhcccCCcccEEEE
Confidence            5568999999996 666678886   37899999999999987642        25799999999999888889999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+++-  +..+++++++|+|||||+|++-.
T Consensus       106 ~~~~h~~--~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          106 AQAMHWF--DLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             CSCCTTC--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeehhHh--hHHHHHHHHHHHcCCCCEEEEEE
Confidence            6544432  45679999999999999997744

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.47  E-value=6e-13  Score=113.23  Aligned_cols=108  Identities=15%  Similarity=0.132  Sum_probs=88.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC-CeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST-RMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~-ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++.+|||||||+ |..++.+++.   +.+|+|+|+|+.+++.|++.+.. .++.. +++++++|+.+.. ..+.||+|+
T Consensus        51 ~~~~~vLdiG~G~-G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~~~~~~~~d~~~~~-~~~~~D~v~  124 (194)
T 1dus_A           51 DKDDDILDLGCGY-GVIGIALADE---VKSTTMADINRRAIKLAKENIKL-NNLDNYDIRVVHSDLYENV-KDRKYNKII  124 (194)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHH-TTCTTSCEEEEECSTTTTC-TTSCEEEEE
T ss_pred             CCCCeEEEeCCCC-CHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHH-cCCCccceEEEECchhccc-ccCCceEEE
Confidence            5788999999996 5666677763   88999999999999999999987 67755 6999999998743 345899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      .............++++++.+.|+|||.+++....
T Consensus       125 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          125 TNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             ECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             ECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            87644333567789999999999999999887643

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.47  E-value=1.5e-12  Score=113.33  Aligned_cols=102  Identities=15%  Similarity=0.187  Sum_probs=83.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.   +.+|+|+|+|+.+++.|++   .  +. .+++|+++|+.++ ...++||+|+.
T Consensus        45 ~~~~~vLdiG~G~-G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~---~--~~-~~~~~~~~d~~~~-~~~~~~D~v~~  113 (218)
T 3ou2_A           45 NIRGDVLELASGT-GYWTRHLSGL---ADRVTALDGSAEMIAEAGR---H--GL-DNVEFRQQDLFDW-TPDRQWDAVFF  113 (218)
T ss_dssp             TSCSEEEEESCTT-SHHHHHHHHH---SSEEEEEESCHHHHHHHGG---G--CC-TTEEEEECCTTSC-CCSSCEEEEEE
T ss_pred             CCCCeEEEECCCC-CHHHHHHHhc---CCeEEEEeCCHHHHHHHHh---c--CC-CCeEEEecccccC-CCCCceeEEEE
Confidence            5678999999996 5666777774   8899999999999999987   2  22 6799999999988 55569999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ...+ +++.+...++++++++.|+|||.+++.+.
T Consensus       114 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          114 AHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             echhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            6533 44555568999999999999999998764

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.46  E-value=2e-13  Score=118.49  Aligned_cols=101  Identities=18%  Similarity=0.101  Sum_probs=84.4

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      .+.+|||||||+ |..+..++++   |.+|+|+|+|+++++.|++..       .+++|+++|+.+++...+.||+|+..
T Consensus        41 ~~~~vLDiGcG~-G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~~  109 (203)
T 3h2b_A           41 VDGVILDVGSGT-GRWTGHLASL---GHQIEGLEPATRLVELARQTH-------PSVTFHHGTITDLSDSPKRWAGLLAW  109 (203)
T ss_dssp             CCSCEEEETCTT-CHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC-------TTSEEECCCGGGGGGSCCCEEEEEEE
T ss_pred             CCCeEEEecCCC-CHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC-------CCCeEEeCcccccccCCCCeEEEEeh
Confidence            488999999996 5555677763   789999999999999998863       36899999999988766799999975


Q ss_pred             c-ccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          201 A-LVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       201 a-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      . +.+++.++..++++++++.|||||.+++...
T Consensus       110 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  142 (203)
T 3h2b_A          110 YSLIHMGPGELPDALVALRMAVEDGGGLLMSFF  142 (203)
T ss_dssp             SSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            4 3355556889999999999999999998763

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.46  E-value=1.8e-13  Score=132.16  Aligned_cols=109  Identities=11%  Similarity=0.067  Sum_probs=90.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC-----C-C-CCCeEEEEcccccc-----
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP-----D-L-STRMFFHTTDIMNV-----  187 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~-----g-l-~~ri~f~~gDa~~l-----  187 (318)
                      .++.+|||||||+ |..++.+++.+.++++|+|+|+|+++++.|++.++. .     | + ..+++|+++|+.++     
T Consensus        82 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~g~~~~~~v~~~~~d~~~l~~~~~  159 (383)
T 4fsd_A           82 LEGATVLDLGCGT-GRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEY-HAEKFFGSPSRSNVRFLKGFIENLATAEP  159 (383)
T ss_dssp             GTTCEEEEESCTT-SHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHH-HHHHHHSSTTCCCEEEEESCTTCGGGCBS
T ss_pred             CCCCEEEEecCcc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-hhhhcccccCCCceEEEEccHHHhhhccc
Confidence            5789999999996 677778887655789999999999999999998765 2     2 2 26899999999987     


Q ss_pred             -CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          188 -SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 -~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       +...++||+|+....+.. ..++.+++++++++|||||.|++.+
T Consensus       160 ~~~~~~~fD~V~~~~~l~~-~~d~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          160 EGVPDSSVDIVISNCVCNL-STNKLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CCCCTTCEEEEEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEccchhc-CCCHHHHHHHHHHHcCCCCEEEEEE
Confidence             666679999997664432 2468899999999999999999865

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.46  E-value=3.2e-13  Score=117.21  Aligned_cols=126  Identities=12%  Similarity=0.224  Sum_probs=94.0

Q ss_pred             cCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCC
Q 021008           95 NIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDL  173 (318)
Q Consensus        95 ~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl  173 (318)
                      ..+.+|..|..+.+.-    ... ..++.+|||||||+ |..++.+++.   +. +|+|+|+|+.+++.|++....    
T Consensus        21 ~~~~~~~~~~~~~~~l----~~~-~~~~~~vLdiGcG~-G~~~~~l~~~---~~~~v~~~D~s~~~~~~a~~~~~~----   87 (215)
T 2pxx_A           21 APYDWFGDFSSFRALL----EPE-LRPEDRILVLGCGN-SALSYELFLG---GFPNVTSVDYSSVVVAAMQACYAH----   87 (215)
T ss_dssp             CCCCTTCCHHHHHHHH----GGG-CCTTCCEEEETCTT-CSHHHHHHHT---TCCCEEEEESCHHHHHHHHHHTTT----
T ss_pred             CCcccccCHHHHHHHH----HHh-cCCCCeEEEECCCC-cHHHHHHHHc---CCCcEEEEeCCHHHHHHHHHhccc----
Confidence            3466666666544332    212 26789999999997 5555677764   33 899999999999999998764    


Q ss_pred             CCCeEEEEccccccCcCCCCccEEEecccc-CCC-------------hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          174 STRMFFHTTDIMNVSSALKDYEVVFLAALV-GMD-------------KDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       174 ~~ri~f~~gDa~~l~~~l~~fD~V~~aalv-gm~-------------~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ..+++++++|+.+++...++||+|+..... .+.             ..+..++++++.+.|||||.+++....
T Consensus        88 ~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A           88 VPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             CTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            258999999999987666689999964322 111             346789999999999999999998743

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.46  E-value=5.6e-13  Score=113.48  Aligned_cols=103  Identities=13%  Similarity=0.095  Sum_probs=84.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+||+||||. |..+..+++.   +.+|+|+|+|+.+++.|++...       +++|+++|+.+++...+.||+|+
T Consensus        44 ~~~~~~vLdiG~G~-G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~-------~~~~~~~d~~~~~~~~~~~D~i~  112 (195)
T 3cgg_A           44 APRGAKILDAGCGQ-GRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP-------EARWVVGDLSVDQISETDFDLIV  112 (195)
T ss_dssp             SCTTCEEEEETCTT-THHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTTSCCCCCCEEEEE
T ss_pred             ccCCCeEEEECCCC-CHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC-------CCcEEEcccccCCCCCCceeEEE
Confidence            46889999999996 5566677763   7899999999999999998653       48999999998766556899999


Q ss_pred             ec-ccc-CCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LA-ALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~a-alv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .. ... .++.++..++++++.+.|+|||.+++...
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~  148 (195)
T 3cgg_A          113 SAGNVMGFLAEDGREPALANIHRALGADGRAVIGFG  148 (195)
T ss_dssp             ECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            76 333 44557789999999999999999988653

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.45  E-value=3.1e-13  Score=121.28  Aligned_cols=102  Identities=15%  Similarity=0.196  Sum_probs=84.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..+..+++++ |+++|+|+|+|+.+++.|++..       .+++|+++|+.+++ ..++||+|+
T Consensus        31 ~~~~~~vLdiG~G~-G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~-~~~~fD~v~  100 (259)
T 2p35_A           31 LERVLNGYDLGCGP-GNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL-------PNTNFGKADLATWK-PAQKADLLY  100 (259)
T ss_dssp             CSCCSSEEEETCTT-THHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS-------TTSEEEECCTTTCC-CSSCEEEEE
T ss_pred             CCCCCEEEEecCcC-CHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-------CCcEEEECChhhcC-ccCCcCEEE
Confidence            46789999999996 56667777764 7999999999999999998862       56899999999987 556899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....++. ..+..++++++++.|||||.+++..
T Consensus       101 ~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          101 ANAVFQW-VPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             EESCGGG-STTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EeCchhh-CCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            7654432 2577899999999999999998865

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.45  E-value=5.8e-13  Score=117.93  Aligned_cols=104  Identities=13%  Similarity=0.111  Sum_probs=85.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.   +.+|+|+|+|+.+++.|++.... .+.  +++|+++|+.+++.. +.||+|+.
T Consensus        36 ~~~~~vLdiG~G~-G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~-~~~--~~~~~~~d~~~~~~~-~~fD~v~~  107 (246)
T 1y8c_A           36 LVFDDYLDLACGT-GNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRS-QGL--KPRLACQDISNLNIN-RKFDLITC  107 (246)
T ss_dssp             CCTTEEEEETCTT-STTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHH-TTC--CCEEECCCGGGCCCS-CCEEEEEE
T ss_pred             CCCCeEEEeCCCC-CHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhh-cCC--CeEEEecccccCCcc-CCceEEEE
Confidence            4778999999996 5555677763   78999999999999999999887 444  899999999998765 68999997


Q ss_pred             cc--ccCC-ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AA--LVGM-DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aa--lvgm-~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..  +.++ +.++..++++++++.|+|||.+++..
T Consensus       108 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (246)
T 1y8c_A          108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            54  3344 34788899999999999999999854

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.45  E-value=3.9e-13  Score=119.28  Aligned_cols=102  Identities=10%  Similarity=0.151  Sum_probs=83.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++.+|||||||+ |..+..+++.   +. +|+|+|+|+.+++.|++....     .+++|+++|+.+++...++||+|+
T Consensus        42 ~~~~~vLdiG~G~-G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~  112 (243)
T 3bkw_A           42 VGGLRIVDLGCGF-GWFCRWAHEH---GASYVLGLDLSEKMLARARAAGPD-----TGITYERADLDKLHLPQDSFDLAY  112 (243)
T ss_dssp             CTTCEEEEETCTT-CHHHHHHHHT---TCSEEEEEESCHHHHHHHHHTSCS-----SSEEEEECCGGGCCCCTTCEEEEE
T ss_pred             cCCCEEEEEcCcC-CHHHHHHHHC---CCCeEEEEcCCHHHHHHHHHhccc-----CCceEEEcChhhccCCCCCceEEE
Confidence            5788999999996 5555677763   55 999999999999999987764     479999999999876566899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....++ ...+..++++++++.|+|||.+++..
T Consensus       113 ~~~~l~-~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          113 SSLALH-YVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             EESCGG-GCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Eecccc-ccchHHHHHHHHHHhcCcCcEEEEEe
Confidence            765432 12467899999999999999999865

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.44  E-value=5.6e-13  Score=122.28  Aligned_cols=107  Identities=14%  Similarity=0.192  Sum_probs=85.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC---CCCeEEEEccccccC---cCCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL---STRMFFHTTDIMNVS---SALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl---~~ri~f~~gDa~~l~---~~l~~  193 (318)
                      .++.+|||||||+ |..++.++++   |++|+|+|+|+++++.|++.... .+.   ..++.+..+|+.+++   ...++
T Consensus        56 ~~~~~vLDiGcG~-G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  130 (293)
T 3thr_A           56 HGCHRVLDVACGT-GVDSIMLVEE---GFSVTSVDASDKMLKYALKERWN-RRKEPAFDKWVIEEANWLTLDKDVPAGDG  130 (293)
T ss_dssp             TTCCEEEETTCTT-SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH-TTTSHHHHTCEEEECCGGGHHHHSCCTTC
T ss_pred             cCCCEEEEecCCC-CHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhh-cccccccceeeEeecChhhCccccccCCC
Confidence            5778999999996 6666778873   78999999999999999887643 222   257899999999887   55568


Q ss_pred             ccEEEec--cccCCCh-----hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLA--ALVGMDK-----DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~a--alvgm~~-----~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||+|+..  .+.++..     ++..++++++++.|||||.+++..
T Consensus       131 fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          131 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             EEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            9999975  3434432     568999999999999999998865

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.44  E-value=2.1e-13  Score=128.29  Aligned_cols=108  Identities=11%  Similarity=0.098  Sum_probs=79.3

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC-----CeEEEEccc------cccC-
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST-----RMFFHTTDI------MNVS-  188 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~-----ri~f~~gDa------~~l~-  188 (318)
                      ++.+|||||||+++.+.. +++.  .+++|+|+|+|+++++.|++.... .+...     +++|+++|+      .+++ 
T Consensus        48 ~~~~VLDlGCG~G~~l~~-~~~~--~~~~v~GiD~S~~~l~~A~~~~~~-~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~  123 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEK-YFYG--EIALLVATDPDADAIARGNERYNK-LNSGIKTKYYKFDYIQETIRSDTFVSSVRE  123 (302)
T ss_dssp             SCCEEEETTCTTTTTHHH-HHHT--TCSEEEEEESCHHHHHHHHHHHHH-HCC----CCCEEEEEECCTTSSSHHHHHHT
T ss_pred             CCCeEEEEecCCcHhHHH-HHhc--CCCeEEEEECCHHHHHHHHHHHHh-ccccccccccccchhhhhcccchhhhhhhc
Confidence            578999999997555544 4442  368999999999999999998775 34321     277888888      3332 


Q ss_pred             -cCCCCccEEEeccccC--CChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          189 -SALKDYEVVFLAALVG--MDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       189 -~~l~~fD~V~~aalvg--m~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                       ...++||+|+....++  ++.+++.+++++++++|||||.+++...
T Consensus       124 ~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          124 VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence             2345899998543332  2335678999999999999999998763

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.44  E-value=1.2e-12  Score=123.21  Aligned_cols=106  Identities=14%  Similarity=0.117  Sum_probs=89.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++++ |+.+++++|+ |.+++.|++.+.. .|+.++++|+.+|..+ +... +||+|++
T Consensus       168 ~~~~~vlDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~-~~p~-~~D~v~~  241 (332)
T 3i53_A          168 AALGHVVDVGGGS-GGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLD-TGLSGRAQVVVGSFFD-PLPA-GAGGYVL  241 (332)
T ss_dssp             GGGSEEEEETCTT-SHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHH-TTCTTTEEEEECCTTS-CCCC-SCSEEEE
T ss_pred             CCCCEEEEeCCCh-hHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhh-cCcCcCeEEecCCCCC-CCCC-CCcEEEE
Confidence            4568999999996 56667788765 8999999999 9999999999988 8888999999999973 2222 7999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.++..++++++++.|+|||+|++.+
T Consensus       242 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          242 SAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIE  274 (332)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             ehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            6644 4566667999999999999999998876

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.44  E-value=8e-13  Score=119.57  Aligned_cols=100  Identities=11%  Similarity=0.124  Sum_probs=81.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..++++   +.+|+|+|+|+++++.|++...       +++|+++|+.+++. .+.||+|+.
T Consensus        49 ~~~~~vLDiGcG~-G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~d~~~~~~-~~~fD~v~~  116 (263)
T 3pfg_A           49 PKAASLLDVACGT-GMHLRHLADS---FGTVEGLELSADMLAIARRRNP-------DAVLHHGDMRDFSL-GRRFSAVTC  116 (263)
T ss_dssp             TTCCEEEEETCTT-SHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTTCCC-SCCEEEEEE
T ss_pred             CCCCcEEEeCCcC-CHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-------CCEEEECChHHCCc-cCCcCEEEE
Confidence            5679999999996 5556677763   7799999999999999998643       68999999999876 468999997


Q ss_pred             cc--ccCCC-hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AA--LVGMD-KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aa--lvgm~-~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..  +..+. .++..++++++++.|||||.+++..
T Consensus       117 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          117 MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             CTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             cCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            63  33442 3677899999999999999999964

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.43  E-value=7.5e-13  Score=118.60  Aligned_cols=100  Identities=15%  Similarity=0.077  Sum_probs=84.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC--CCCeEEEEcccccc----------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL--STRMFFHTTDIMNV----------  187 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl--~~ri~f~~gDa~~l----------  187 (318)
                      .++++||+||||   +|++++|+.  ++++|++||.|++..+.|++++++ .|+  .++|+++.||+.+.          
T Consensus        29 ~~a~~VLEiGtG---ySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~-~g~~~~~~I~~~~gda~~~~~wg~p~~~~  102 (202)
T 3cvo_A           29 EEAEVILEYGSG---GSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAA-NPPAEGTEVNIVWTDIGPTGDWGHPVSDA  102 (202)
T ss_dssp             HHCSEEEEESCS---HHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHH-SCCCTTCEEEEEECCCSSBCGGGCBSSST
T ss_pred             hCCCEEEEECch---HHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHH-cCCCCCCceEEEEeCchhhhcccccccch
Confidence            568999999996   799999972  589999999999999999999998 898  89999999997653          


Q ss_pred             -----C---------cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          188 -----S---------SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 -----~---------~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                           +         ...+.||+||+++    ++.  ...+..+.+.|+|||+|++++
T Consensus       103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg----~k~--~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          103 KWRSYPDYPLAVWRTEGFRHPDVVLVDG----RFR--VGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             TGGGTTHHHHGGGGCTTCCCCSEEEECS----SSH--HHHHHHHHHHCSSCEEEEETT
T ss_pred             hhhhHHHHhhhhhccccCCCCCEEEEeC----CCc--hhHHHHHHHhcCCCeEEEEeC
Confidence                 1         1225799999998    332  366777789999999999987

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.43  E-value=6.1e-13  Score=117.59  Aligned_cols=100  Identities=14%  Similarity=0.198  Sum_probs=81.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.   +.+|+|+|+|+++++.|++....      +++|+++|+.+++ ..++||+|+.
T Consensus        41 ~~~~~vLDiGcG~-G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~------~v~~~~~d~~~~~-~~~~fD~v~~  109 (250)
T 2p7i_A           41 FRPGNLLELGSFK-GDFTSRLQEH---FNDITCVEASEEAISHAQGRLKD------GITYIHSRFEDAQ-LPRRYDNIVL  109 (250)
T ss_dssp             CCSSCEEEESCTT-SHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSCS------CEEEEESCGGGCC-CSSCEEEEEE
T ss_pred             cCCCcEEEECCCC-CHHHHHHHHh---CCcEEEEeCCHHHHHHHHHhhhC------CeEEEEccHHHcC-cCCcccEEEE
Confidence            4778999999996 5666777763   56899999999999999987642      7999999999873 4568999997


Q ss_pred             cccc-CCChhHHHHHHHHHH-HhccCCeEEEEEcC
Q 021008          200 AALV-GMDKDEKIRVIDHLA-KYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~-r~LkpGg~lv~r~~  232 (318)
                      ...+ ++  .+..+++++++ ++|||||.+++...
T Consensus       110 ~~~l~~~--~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          110 THVLEHI--DDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             ESCGGGC--SSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhHHHhh--cCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            6544 33  45689999999 99999999988763

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.43  E-value=3e-13  Score=115.18  Aligned_cols=107  Identities=10%  Similarity=0.094  Sum_probs=85.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc-CcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV-SSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l-~~~l~~fD~V~  198 (318)
                      .++.+|||+|||. |..++.++++  +..+|+|+|+|+++++.|++.++. .|+..+++|+++|+.+. +...+.||+|+
T Consensus        30 ~~~~~vLDlGcG~-G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~fD~i~  105 (177)
T 2esr_A           30 FNGGRVLDLFAGS-GGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIM-TKAENRFTLLKMEAERAIDCLTGRFDLVF  105 (177)
T ss_dssp             CCSCEEEEETCTT-CHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHT-TTCGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred             cCCCeEEEeCCCC-CHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHH-cCCCCceEEEECcHHHhHHhhcCCCCEEE
Confidence            5778999999996 5666777763  457999999999999999999998 78878999999999883 33334799999


Q ss_pred             eccccCCChhHHHHHHHHHH--HhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLA--KYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~--r~LkpGg~lv~r~~  232 (318)
                      .....  ......++++.+.  +.|+|||.+++...
T Consensus       106 ~~~~~--~~~~~~~~~~~l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A          106 LDPPY--AKETIVATIEALAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             ECCSS--HHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ECCCC--CcchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence            76422  1245677888887  99999999988763

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.43  E-value=9.1e-13  Score=115.05  Aligned_cols=108  Identities=12%  Similarity=0.008  Sum_probs=83.4

Q ss_pred             HHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc
Q 021008          109 LEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV  187 (318)
Q Consensus       109 ~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l  187 (318)
                      .+...+.... .++.+|||||||++.++ ..+      +. +|+|+|+|+++++.|++..       .+++++++|+.++
T Consensus        25 ~~~~~l~~~~-~~~~~vLdiG~G~G~~~-~~l------~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~   89 (211)
T 2gs9_A           25 EEERALKGLL-PPGESLLEVGAGTGYWL-RRL------PYPQKVGVEPSEAMLAVGRRRA-------PEATWVRAWGEAL   89 (211)
T ss_dssp             HHHHHHHTTC-CCCSEEEEETCTTCHHH-HHC------CCSEEEEECCCHHHHHHHHHHC-------TTSEEECCCTTSC
T ss_pred             HHHHHHHHhc-CCCCeEEEECCCCCHhH-HhC------CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcccccC
Confidence            3444444433 47899999999975333 322      56 9999999999999998765       4689999999998


Q ss_pred             CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          188 SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       188 ~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +...++||+|+....+. ...+..++++++.+.|||||.+++...
T Consensus        90 ~~~~~~fD~v~~~~~l~-~~~~~~~~l~~~~~~L~pgG~l~i~~~  133 (211)
T 2gs9_A           90 PFPGESFDVVLLFTTLE-FVEDVERVLLEARRVLRPGGALVVGVL  133 (211)
T ss_dssp             CSCSSCEEEEEEESCTT-TCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEcChhh-hcCCHHHHHHHHHHHcCCCCEEEEEec
Confidence            87667899999765442 124678999999999999999988763

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.43  E-value=1.2e-12  Score=124.80  Aligned_cols=104  Identities=14%  Similarity=0.117  Sum_probs=85.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|||||||. |.-++.+|+.  ...+|+|+|+|+ +++.|++.++. .|+.++++++.+|+.+++...++||+|+.
T Consensus        63 ~~~~~VLDiGcGt-G~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs  137 (340)
T 2fyt_A           63 FKDKVVLDVGCGT-GILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRL-NKLEDTITLIKGKIEEVHLPVEKVDVIIS  137 (340)
T ss_dssp             TTTCEEEEETCTT-SHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHH-TTCTTTEEEEESCTTTSCCSCSCEEEEEE
T ss_pred             cCCCEEEEeeccC-cHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHH-cCCCCcEEEEEeeHHHhcCCCCcEEEEEE
Confidence            6789999999996 5556777763  345999999997 99999999988 88889999999999998766568999996


Q ss_pred             ccc--cCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          200 AAL--VGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       200 aal--vgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      ..+  ..........++.++.+.|||||+++
T Consensus       138 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          138 EWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            542  11133567789999999999999987

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.43  E-value=7.3e-13  Score=120.13  Aligned_cols=110  Identities=13%  Similarity=0.064  Sum_probs=82.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc-----CCCCCCCeEEEEccccc-cC--cCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS-----DPDLSTRMFFHTTDIMN-VS--SAL  191 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~-----~~gl~~ri~f~~gDa~~-l~--~~l  191 (318)
                      .++.+|||||||. |..++.||+.+ |++.|+|||+|+.+++.|++.+++     ..++ .+++|+++|+.+ ++  ...
T Consensus        45 ~~~~~vLDiGcG~-G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~  121 (235)
T 3ckk_A           45 QAQVEFADIGCGY-GGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYK  121 (235)
T ss_dssp             -CCEEEEEETCTT-CHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCT
T ss_pred             CCCCeEEEEccCC-cHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCC
Confidence            5678999999995 66667888764 899999999999999999887652     0233 679999999987 55  445


Q ss_pred             CCccEEEeccccCCCh--hHH-----HHHHHHHHHhccCCeEEEEEcC
Q 021008          192 KDYEVVFLAALVGMDK--DEK-----IRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~--~~k-----~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++||.|++..-..+.+  ..|     ..++++++++|||||.|++...
T Consensus       122 ~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          122 GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD  169 (235)
T ss_dssp             TCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence            6899998653211111  111     4699999999999999998764

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.42  E-value=1.1e-12  Score=118.99  Aligned_cols=109  Identities=18%  Similarity=0.063  Sum_probs=85.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH------HHHHHHHHhhcCCCCCCCeEEEEcc---ccccCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS------ANSKALSLVSSDPDLSTRMFFHTTD---IMNVSS  189 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~------ai~~Ar~~~~~~~gl~~ri~f~~gD---a~~l~~  189 (318)
                      ..++.+|||||||. |..++.+++++.++++|+|+|+|+.      +++.|++.+.. .|++.+++|+.+|   ..+++.
T Consensus        41 ~~~~~~vLDiGcG~-G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~  118 (275)
T 3bkx_A           41 VKPGEKILEIGCGQ-GDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLA-GPLGDRLTVHFNTNLSDDLGPI  118 (275)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHT-STTGGGEEEECSCCTTTCCGGG
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHh-cCCCCceEEEECChhhhccCCC
Confidence            46889999999996 5666778876445689999999998      99999999987 7887899999999   455555


Q ss_pred             CCCCccEEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          190 ALKDYEVVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..++||+|+....+ ++  .+...+++.+.+.++|||.+++.+
T Consensus       119 ~~~~fD~v~~~~~l~~~--~~~~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          119 ADQHFDRVVLAHSLWYF--ASANALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             TTCCCSEEEEESCGGGS--SCHHHHHHHHHHHTTTCSEEEEEE
T ss_pred             CCCCEEEEEEccchhhC--CCHHHHHHHHHHHhCCCCEEEEEE
Confidence            56789999975543 33  234457777777777799998865

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.42  E-value=9.6e-13  Score=117.17  Aligned_cols=102  Identities=11%  Similarity=0.091  Sum_probs=78.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc----CcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV----SSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l----~~~l~~fD  195 (318)
                      .++.+|||||||+ |..+..+|+.. ++.+|+|+|+|+.+++.+.+.++.   . .++.++.+|+.+.    +.. +.||
T Consensus        56 ~~g~~VLDlGcGt-G~~~~~la~~~-~~~~V~gvD~s~~~l~~~~~~a~~---~-~~v~~~~~d~~~~~~~~~~~-~~fD  128 (210)
T 1nt2_A           56 RGDERVLYLGAAS-GTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRE---R-NNIIPLLFDASKPWKYSGIV-EKVD  128 (210)
T ss_dssp             CSSCEEEEETCTT-SHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHH---C-SSEEEECSCTTCGGGTTTTC-CCEE
T ss_pred             CCCCEEEEECCcC-CHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHhc---C-CCeEEEEcCCCCchhhcccc-ccee
Confidence            6788999999997 55666788764 467999999999988777666654   1 4789999999874    222 5899


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+....   +..+...+++++++.|||||.+++..
T Consensus       129 ~V~~~~~---~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          129 LIYQDIA---QKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecc---ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            9997632   22345556999999999999998874

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.42  E-value=7.2e-13  Score=118.49  Aligned_cols=99  Identities=13%  Similarity=0.052  Sum_probs=80.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc--CcCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV--SSALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l--~~~l~~fD~V  197 (318)
                      .++.+|||||||.+ ..+..+++.   |++|+|+|+|+++++.|++.          ++++++|+.+.  +...++||+|
T Consensus        40 ~~~~~vLDiGcG~G-~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~----------~~~~~~d~~~~~~~~~~~~fD~i  105 (240)
T 3dli_A           40 KGCRRVLDIGCGRG-EFLELCKEE---GIESIGVDINEDMIKFCEGK----------FNVVKSDAIEYLKSLPDKYLDGV  105 (240)
T ss_dssp             TTCSCEEEETCTTT-HHHHHHHHH---TCCEEEECSCHHHHHHHHTT----------SEEECSCHHHHHHTSCTTCBSEE
T ss_pred             cCCCeEEEEeCCCC-HHHHHHHhC---CCcEEEEECCHHHHHHHHhh----------cceeeccHHHHhhhcCCCCeeEE
Confidence            57799999999975 455677764   88999999999999998754          78999999885  5555689999


Q ss_pred             Eecccc-CCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          198 FLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       198 ~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +....+ +++.++..++++++.+.|||||.+++...
T Consensus       106 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A          106 MISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred             EECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            975543 55556779999999999999999998764

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.42  E-value=6.6e-13  Score=116.11  Aligned_cols=99  Identities=19%  Similarity=0.226  Sum_probs=83.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.   |.+|+|+|+|+.+++.|++..        +++++.+|+.+++ ..+.||+|+.
T Consensus        42 ~~~~~vLDiGcG~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~d~~~~~-~~~~fD~v~~  108 (211)
T 3e23_A           42 PAGAKILELGCGA-GYQAEAMLAA---GFDVDATDGSPELAAEASRRL--------GRPVRTMLFHQLD-AIDAYDAVWA  108 (211)
T ss_dssp             CTTCEEEESSCTT-SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH--------TSCCEECCGGGCC-CCSCEEEEEE
T ss_pred             CCCCcEEEECCCC-CHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc--------CCceEEeeeccCC-CCCcEEEEEe
Confidence            5788999999996 5566777763   889999999999999999876        3578899999987 5568999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ +++.++..++++++++.|||||.+++..
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  141 (211)
T 3e23_A          109 HACLLHVPRDELADVLKLIWRALKPGGLFYASY  141 (211)
T ss_dssp             CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            6533 5566788999999999999999998875

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.42  E-value=4e-13  Score=118.23  Aligned_cols=106  Identities=12%  Similarity=0.122  Sum_probs=83.6

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC-CCeEEEEccccccCcC--CCC-ccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS-TRMFFHTTDIMNVSSA--LKD-YEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~-~ri~f~~gDa~~l~~~--l~~-fD~  196 (318)
                      ++.+|||+|||++.++ +.++++  ...+|+|||+|+++++.|++.++. .|+. ++++|+++|+.++...  .+. ||+
T Consensus        53 ~~~~vLDlGcGtG~~~-~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~  128 (201)
T 2ift_A           53 HQSECLDGFAGSGSLG-FEALSR--QAKKVTFLELDKTVANQLKKNLQT-LKCSSEQAEVINQSSLDFLKQPQNQPHFDV  128 (201)
T ss_dssp             TTCEEEETTCTTCHHH-HHHHHT--TCSEEEEECSCHHHHHHHHHHHHH-TTCCTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred             CCCeEEEcCCccCHHH-HHHHHc--cCCEEEEEECCHHHHHHHHHHHHH-hCCCccceEEEECCHHHHHHhhccCCCCCE
Confidence            6789999999975554 555543  236999999999999999999988 7775 6899999999886543  347 999


Q ss_pred             EEeccccCCChhHHHHHHHHH--HHhccCCeEEEEEcC
Q 021008          197 VFLAALVGMDKDEKIRVIDHL--AKYMAPGALLMLRSA  232 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l--~r~LkpGg~lv~r~~  232 (318)
                      |+++....  .....++++.+  .+.|+|||.+++...
T Consensus       129 I~~~~~~~--~~~~~~~l~~~~~~~~LkpgG~l~i~~~  164 (201)
T 2ift_A          129 VFLDPPFH--FNLAEQAISLLCENNWLKPNALIYVETE  164 (201)
T ss_dssp             EEECCCSS--SCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EEECCCCC--CccHHHHHHHHHhcCccCCCcEEEEEEC
Confidence            99875322  35677889998  667999999988664

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.42  E-value=1.3e-12  Score=115.84  Aligned_cols=103  Identities=16%  Similarity=0.209  Sum_probs=84.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.    .+|+|+|+|+.+++.|++.... .+  .+++|+++|+.+++.. ++||+|+.
T Consensus        32 ~~~~~vLdiG~G~-G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~-~~--~~~~~~~~d~~~~~~~-~~fD~v~~  102 (243)
T 3d2l_A           32 EPGKRIADIGCGT-GTATLLLADH----YEVTGVDLSEEMLEIAQEKAME-TN--RHVDFWVQDMRELELP-EPVDAITI  102 (243)
T ss_dssp             CTTCEEEEESCTT-CHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHH-TT--CCCEEEECCGGGCCCS-SCEEEEEE
T ss_pred             CCCCeEEEecCCC-CHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhh-cC--CceEEEEcChhhcCCC-CCcCEEEE
Confidence            5679999999997 5555667652    7999999999999999999876 33  6799999999988654 68999997


Q ss_pred             c--cccCC-ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 A--ALVGM-DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 a--alvgm-~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .  .+.++ +.++..++++++++.|+|||.+++..
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A          103 LCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            4  33344 45778899999999999999998844

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.42  E-value=4.2e-13  Score=120.91  Aligned_cols=104  Identities=19%  Similarity=0.191  Sum_probs=87.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||+|||+ |..++.+++...|+.+|+++|+|+++++.|++.++. .|+.++++++.+|+.+. ...++||+|+
T Consensus        91 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~-~~~~~~D~v~  167 (255)
T 3mb5_A           91 ISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKW-AGFDDRVTIKLKDIYEG-IEEENVDHVI  167 (255)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-HTCTTTEEEECSCGGGC-CCCCSEEEEE
T ss_pred             CCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHH-cCCCCceEEEECchhhc-cCCCCcCEEE
Confidence            36789999999997 566677887645789999999999999999999988 78888899999999875 3445799999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+.      .+..++++++.+.|+|||.+++-.
T Consensus       168 ~~~------~~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          168 LDL------PQPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             ECS------SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ECC------CCHHHHHHHHHHHcCCCCEEEEEE
Confidence            753      345678999999999999998865

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.41  E-value=1.9e-12  Score=127.50  Aligned_cols=107  Identities=10%  Similarity=0.012  Sum_probs=85.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHh-------hcCCCC-CCCeEEEEccccccCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLV-------SSDPDL-STRMFFHTTDIMNVSS  189 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~-------~~~~gl-~~ri~f~~gDa~~l~~  189 (318)
                      ..++.+|||||||. |..++.+|+.+  ++ +|+|||+++++++.|++.+       +. .|+ ..+|+|++||+.++++
T Consensus       171 l~~gd~VLDLGCGt-G~l~l~lA~~~--g~~kVvGIDiS~~~lelAr~n~e~frkr~~~-~Gl~~~rVefi~GD~~~lp~  246 (438)
T 3uwp_A          171 MTDDDLFVDLGSGV-GQVVLQVAAAT--NCKHHYGVEKADIPAKYAETMDREFRKWMKW-YGKKHAEYTLERGDFLSEEW  246 (438)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHHHC--CCSEEEEEECCHHHHHHHHHHHHHHHHHHHH-HTBCCCEEEEEECCTTSHHH
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHH-hCCCCCCeEEEECcccCCcc
Confidence            47889999999995 66667788753  55 5999999999999998754       33 465 3789999999999875


Q ss_pred             CC--CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          190 AL--KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       190 ~l--~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..  ..||+||+..+..  .++..+.|.++++.|||||+|++-+
T Consensus       247 ~d~~~~aDVVf~Nn~~F--~pdl~~aL~Ei~RvLKPGGrIVssE  288 (438)
T 3uwp_A          247 RERIANTSVIFVNNFAF--GPEVDHQLKERFANMKEGGRIVSSK  288 (438)
T ss_dssp             HHHHHTCSEEEECCTTC--CHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred             ccccCCccEEEEccccc--CchHHHHHHHHHHcCCCCcEEEEee
Confidence            43  4799999765442  2577888899999999999999865

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.41  E-value=1.1e-12  Score=122.79  Aligned_cols=107  Identities=16%  Similarity=0.166  Sum_probs=89.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++++ |+.+++++|++ .+++.|++.+.. .|+.++++|+.+|..+.+.. +.||+|++
T Consensus       164 ~~~~~vlDvG~G~-G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~-~~~D~v~~  238 (335)
T 2r3s_A          164 IEPLKVLDISASH-GLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARI-QGVASRYHTIAGSAFEVDYG-NDYDLVLL  238 (335)
T ss_dssp             CCCSEEEEETCTT-CHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHH-HTCGGGEEEEESCTTTSCCC-SCEEEEEE
T ss_pred             CCCCEEEEECCCc-CHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHh-cCCCcceEEEecccccCCCC-CCCcEEEE
Confidence            5678999999996 55666788765 89999999999 999999999887 78888999999999876433 25999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.++..++++++++.|+|||.+++.+
T Consensus       239 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          239 PNFLHHFDVATCEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhccCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            5533 4566777899999999999999888765

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.41  E-value=1.6e-12  Score=125.60  Aligned_cols=105  Identities=12%  Similarity=0.109  Sum_probs=87.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++++|||||||. |..++.+|++   |+ +|+|||+| ++++.|++.++. .|+.++++|+++|+.+++.. +.||+|+
T Consensus        62 ~~~~~VLDlGcGt-G~ls~~la~~---g~~~V~gvD~s-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~-~~~D~Iv  134 (376)
T 3r0q_C           62 FEGKTVLDVGTGS-GILAIWSAQA---GARKVYAVEAT-KMADHARALVKA-NNLDHIVEVIEGSVEDISLP-EKVDVII  134 (376)
T ss_dssp             TTTCEEEEESCTT-THHHHHHHHT---TCSEEEEEESS-TTHHHHHHHHHH-TTCTTTEEEEESCGGGCCCS-SCEEEEE
T ss_pred             CCCCEEEEeccCc-CHHHHHHHhc---CCCEEEEEccH-HHHHHHHHHHHH-cCCCCeEEEEECchhhcCcC-CcceEEE
Confidence            6789999999996 6666778873   55 99999999 999999999998 88999999999999998655 6899999


Q ss_pred             eccccCC--ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGM--DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm--~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+...  .......++..+.+.|||||.+++..
T Consensus       135 ~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          135 SEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             ECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             EcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            7543211  23457789999999999999998755

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.41  E-value=3.8e-12  Score=122.11  Aligned_cols=106  Identities=16%  Similarity=0.197  Sum_probs=89.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++++ |+.+++++|+ +.+++.|++.+.. .|+.++++|+.+|..+ +... +||+|++
T Consensus       201 ~~~~~vlDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-~~l~~~v~~~~~d~~~-~~p~-~~D~v~~  274 (369)
T 3gwz_A          201 SGAATAVDIGGGR-GSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTG-RGLADRCEILPGDFFE-TIPD-GADVYLI  274 (369)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHH-TTCTTTEEEEECCTTT-CCCS-SCSEEEE
T ss_pred             ccCcEEEEeCCCc-cHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhh-cCcCCceEEeccCCCC-CCCC-CceEEEh
Confidence            5679999999996 66667788764 8999999999 9999999999988 8888999999999983 2222 7999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.+...++++++++.|+|||+|++.+
T Consensus       275 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          275 KHVLHDWDDDDVVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             hhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            6644 4566666799999999999999998866

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.41  E-value=6e-13  Score=126.73  Aligned_cols=108  Identities=15%  Similarity=0.199  Sum_probs=85.7

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC--CCCccEEEe
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA--LKDYEVVFL  199 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~--l~~fD~V~~  199 (318)
                      +.+||+||||. |..+..+++++ |+++|++||||+++++.||+.+.. . ...|++++.+|+.+....  .++||+|++
T Consensus        90 ~~rVLdIG~G~-G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~-~-~~~rv~v~~~Da~~~l~~~~~~~fDvIi~  165 (317)
T 3gjy_A           90 KLRITHLGGGA-CTMARYFADVY-PQSRNTVVELDAELARLSREWFDI-P-RAPRVKIRVDDARMVAESFTPASRDVIIR  165 (317)
T ss_dssp             GCEEEEESCGG-GHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCC-C-CTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred             CCEEEEEECCc-CHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccc-c-CCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence            34999999995 67777888754 899999999999999999999874 2 357999999999875433  358999998


Q ss_pred             ccccCCCh---hHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          200 AALVGMDK---DEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       200 aalvgm~~---~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      +...+...   -...+++++++++|+|||++++...+
T Consensus       166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            86543211   11368999999999999999987753

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.40  E-value=4.9e-13  Score=131.16  Aligned_cols=115  Identities=13%  Similarity=0.068  Sum_probs=87.2

Q ss_pred             CCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccC------CChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc
Q 021008           96 IFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSG------PLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS  169 (318)
Q Consensus        96 ~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsG------plp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~  169 (318)
                      .+.|...|.++...    +    ..++.+|||||||      ++|. ++.++++++|+++|+|||+|+.+.      .  
T Consensus       199 ~h~y~~~Ye~lL~~----l----~~~~~rVLDIGCG~~~~~~TGG~-Sl~la~~~fP~a~V~GVDiSp~m~------~--  261 (419)
T 3sso_A          199 LHWFTPHYDRHFRD----Y----RNQQVRVLEIGVGGYKHPEWGGG-SLRMWKSFFPRGQIYGLDIMDKSH------V--  261 (419)
T ss_dssp             SCBCHHHHHHHHGG----G----TTSCCEEEEECCSCTTCSSCCCH-HHHHHHHHCTTCEEEEEESSCCGG------G--
T ss_pred             cchHHHHHHHHHHh----h----cCCCCEEEEEecCCCcCCCCCHH-HHHHHHHhCCCCEEEEEECCHHHh------h--
Confidence            44455556554322    1    2578999999999      4444 456666667999999999999862      1  


Q ss_pred             CCCCCCCeEEEEccccccCcC------CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          170 DPDLSTRMFFHTTDIMNVSSA------LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       170 ~~gl~~ri~f~~gDa~~l~~~------l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                         ...+++|+++|+.++++.      .++||+|+.++..  ...+..++|++++++|||||++++.+-
T Consensus       262 ---~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgsH--~~~d~~~aL~el~rvLKPGGvlVi~Dl  325 (419)
T 3sso_A          262 ---DELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGSH--INAHVRTSFAALFPHVRPGGLYVIEDM  325 (419)
T ss_dssp             ---CBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSCC--CHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred             ---cCCCcEEEEecccccchhhhhhcccCCccEEEECCcc--cchhHHHHHHHHHHhcCCCeEEEEEec
Confidence               237899999999997654      4689999977543  346788999999999999999999873

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.40  E-value=1.2e-12  Score=119.43  Aligned_cols=107  Identities=10%  Similarity=0.056  Sum_probs=90.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|+|||||+ |+-++.+|+. .+..+|+++|+|+.+++.|+++++. .|+.++++|+.+|+.+.......||+|++
T Consensus        20 ~~g~~VlDIGtGs-G~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~-~gl~~~I~~~~gD~l~~~~~~~~~D~Ivi   96 (230)
T 3lec_A           20 PKGARLLDVGSDH-AYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSE-HGLTSKIDVRLANGLSAFEEADNIDTITI   96 (230)
T ss_dssp             CTTEEEEEETCST-THHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHH-TTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCCEEEEECCch-HHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEECchhhccccccccCEEEE
Confidence            6778999999996 6667888875 4677999999999999999999998 89999999999999987654337999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +..-   ..-=.+++++..++++++|.|++-.-
T Consensus        97 aGmG---g~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           97 CGMG---GRLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             EEEC---HHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             eCCc---hHHHHHHHHHHHHHhCcCCEEEEECC
Confidence            7643   34567899999999999999998663

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.40  E-value=2.2e-12  Score=121.98  Aligned_cols=108  Identities=19%  Similarity=0.269  Sum_probs=90.2

Q ss_pred             CC-CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEE
Q 021008          120 RF-PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVV  197 (318)
Q Consensus       120 ~~-~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V  197 (318)
                      .+ +.+|||||||+ |..+..+++++ |+.+++++|+ +++++.|++.+.. .++.++++|+.+|..+.+. ..++||+|
T Consensus       177 ~~~~~~vlDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~D~v  252 (352)
T 3mcz_A          177 FARARTVIDLAGGH-GTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHA-HDLGGRVEFFEKNLLDARNFEGGAADVV  252 (352)
T ss_dssp             GTTCCEEEEETCTT-CHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHH-TTCGGGEEEEECCTTCGGGGTTCCEEEE
T ss_pred             cCCCCEEEEeCCCc-CHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHh-cCCCCceEEEeCCcccCcccCCCCccEE
Confidence            45 89999999996 56667778764 8999999999 8999999999988 7888899999999988641 22469999


Q ss_pred             Eecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++...+ .++.++..++++++++.|+|||+|++.+
T Consensus       253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          253 MLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            976544 5566677999999999999999998865

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.40  E-value=4.5e-13  Score=127.05  Aligned_cols=110  Identities=12%  Similarity=0.137  Sum_probs=83.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC--CC-CCCeEEEEcccccc-CcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP--DL-STRMFFHTTDIMNV-SSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~--gl-~~ri~f~~gDa~~l-~~~l~~fD  195 (318)
                      ..++|||+||||. |..++.+++ +.++.+|+++|+|+++++.|++.+.. .  |+ ..+++++.+|+.+. +...+.||
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~Ar~~~~~-~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  183 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLK-HESVEKVTMCEIDEMVIDVAKKFLPG-MSCGFSHPKLDLFCGDGFEFLKNHKNEFD  183 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTT-CTTCCEEEEECSCHHHHHHHHHHCTT-TSGGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHH-hccccCCCCEEEEEChHHHHHHhcCCCce
Confidence            5779999999995 677777876 44689999999999999999999875 3  44 57999999999873 33345899


Q ss_pred             EEEeccccCCChhHH---HHHHHHHHHhccCCeEEEEEcC
Q 021008          196 VVFLAALVGMDKDEK---IRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       196 ~V~~aalvgm~~~~k---~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +|++++..+......   .++++++.+.|+|||++++...
T Consensus       184 ~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~  223 (314)
T 2b2c_A          184 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  223 (314)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence            999887432211111   6899999999999999999864

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.40  E-value=1.7e-12  Score=113.15  Aligned_cols=101  Identities=12%  Similarity=0.166  Sum_probs=84.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.+++.  +..+|+|+|+|+.+++.|++.+.. .++.+ ++|+++|+.+.+  .+.||+|+.
T Consensus        59 ~~~~~vLDiG~G~-G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~-v~~~~~d~~~~~--~~~fD~i~~  131 (205)
T 3grz_A           59 VKPLTVADVGTGS-GILAIAAHKL--GAKSVLATDISDESMTAAEENAAL-NGIYD-IALQKTSLLADV--DGKFDLIVA  131 (205)
T ss_dssp             SSCCEEEEETCTT-SHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHH-TTCCC-CEEEESSTTTTC--CSCEEEEEE
T ss_pred             cCCCEEEEECCCC-CHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHH-cCCCc-eEEEeccccccC--CCCceEEEE
Confidence            6789999999997 5666678762  566999999999999999999987 67755 999999998753  358999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...    .....++++++.+.|+|||.+++..
T Consensus       132 ~~~----~~~~~~~l~~~~~~L~~gG~l~~~~  159 (205)
T 3grz_A          132 NIL----AEILLDLIPQLDSHLNEDGQVIFSG  159 (205)
T ss_dssp             ESC----HHHHHHHGGGSGGGEEEEEEEEEEE
T ss_pred             CCc----HHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            653    3556889999999999999998854

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.40  E-value=7.7e-13  Score=116.45  Aligned_cols=106  Identities=12%  Similarity=0.112  Sum_probs=79.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHH----HHHhhcCCCCCCCeEEEEccccccCcCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKA----LSLVSSDPDLSTRMFFHTTDIMNVSSALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~A----r~~~~~~~gl~~ri~f~~gDa~~l~~~l~~f  194 (318)
                      ..++.+|||||||+ |..++.+|++ .|+++|+|+|+|+++++.+    ++.... .++ .+++|+++|+.++++..+. 
T Consensus        25 ~~~~~~vLDiGcG~-G~~~~~la~~-~p~~~v~gvD~s~~~l~~~~~~a~~~~~~-~~~-~~v~~~~~d~~~l~~~~~~-   99 (218)
T 3mq2_A           25 SQYDDVVLDVGTGD-GKHPYKVARQ-NPSRLVVALDADKSRMEKISAKAAAKPAK-GGL-PNLLYLWATAERLPPLSGV-   99 (218)
T ss_dssp             TTSSEEEEEESCTT-CHHHHHHHHH-CTTEEEEEEESCGGGGHHHHHHHTSCGGG-TCC-TTEEEEECCSTTCCSCCCE-
T ss_pred             ccCCCEEEEecCCC-CHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHhhhh-cCC-CceEEEecchhhCCCCCCC-
Confidence            36788999999996 6666778876 4899999999999988753    333333 444 4899999999998876555 


Q ss_pred             cEEEeccccCCC------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMD------KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~------~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |.|++..  .+.      ..+..++++++++.|||||++++..
T Consensus       100 d~v~~~~--~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          100 GELHVLM--PWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             EEEEEES--CCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEEEc--cchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence            8776221  110      1223789999999999999999854

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.39  E-value=4e-13  Score=121.71  Aligned_cols=101  Identities=11%  Similarity=0.061  Sum_probs=81.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHh---CCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc---CcCCC-
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAIN---HLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV---SSALK-  192 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~---~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l---~~~l~-  192 (318)
                      .++.+|||||||+ |..++.||+.   ..++++|+|||+|+++++.|+.       +..+++|+++|+.+.   +...+ 
T Consensus        80 ~~~~~VLDiG~Gt-G~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-------~~~~v~~~~gD~~~~~~l~~~~~~  151 (236)
T 2bm8_A           80 LRPRTIVELGVYN-GGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-------DMENITLHQGDCSDLTTFEHLREM  151 (236)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-------GCTTEEEEECCSSCSGGGGGGSSS
T ss_pred             cCCCEEEEEeCCC-CHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-------cCCceEEEECcchhHHHHHhhccC
Confidence            3578999999996 6777788875   3478999999999999988862       347899999999884   43223 


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHH-hccCCeEEEEEcC
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAK-YMAPGALLMLRSA  232 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r-~LkpGg~lv~r~~  232 (318)
                      .||+|++++..    .+..+++.++.+ .|||||++++.+.
T Consensus       152 ~fD~I~~d~~~----~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          152 AHPLIFIDNAH----ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             CSSEEEEESSC----SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             CCCEEEECCch----HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            69999987642    356779999997 9999999999763

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.39  E-value=1.9e-12  Score=113.13  Aligned_cols=101  Identities=15%  Similarity=0.132  Sum_probs=83.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..+..+++.   +.+|+++|+|+++++.|++.++. .|+. +++|+.+|+.+.....+.||+|+
T Consensus        75 ~~~~~~vLdiG~G~-G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~-~~~~-~v~~~~~d~~~~~~~~~~~D~i~  148 (210)
T 3lbf_A           75 LTPQSRVLEIGTGS-GYQTAILAHL---VQHVCSVERIKGLQWQARRRLKN-LDLH-NVSTRHGDGWQGWQARAPFDAII  148 (210)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHH-TTCC-SEEEEESCGGGCCGGGCCEEEEE
T ss_pred             CCCCCEEEEEcCCC-CHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHH-cCCC-ceEEEECCcccCCccCCCccEEE
Confidence            36789999999996 6666788874   88999999999999999999988 7774 79999999998665556899999


Q ss_pred             ecccc-CCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          199 LAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       199 ~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ..... .++        +++.+.|||||++++--..
T Consensus       149 ~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          149 VTAAPPEIP--------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             ESSBCSSCC--------THHHHTEEEEEEEEEEECS
T ss_pred             Eccchhhhh--------HHHHHhcccCcEEEEEEcC
Confidence            87644 222        2578999999999887654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.39  E-value=2.1e-12  Score=109.59  Aligned_cols=104  Identities=13%  Similarity=0.150  Sum_probs=86.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||+|||+ |..++.+++.   +.+|+++|+|+++++.|++.+.. .|+..+++++++|+.+.....+.||+|+
T Consensus        31 ~~~~~~vldiG~G~-G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~  105 (192)
T 1l3i_A           31 PGKNDVAVDVGCGT-GGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQR-HGLGDNVTLMEGDAPEALCKIPDIDIAV  105 (192)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHH-TTCCTTEEEEESCHHHHHTTSCCEEEEE
T ss_pred             CCCCCEEEEECCCC-CHHHHHHHHh---cCEEEEEECCHHHHHHHHHHHHH-cCCCcceEEEecCHHHhcccCCCCCEEE
Confidence            36789999999996 6666777763   38999999999999999999988 7777899999999987222335899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .....    ....++++++.+.|+|||.+++..
T Consensus       106 ~~~~~----~~~~~~l~~~~~~l~~gG~l~~~~  134 (192)
T 1l3i_A          106 VGGSG----GELQEILRIIKDKLKPGGRIIVTA  134 (192)
T ss_dssp             ESCCT----TCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ECCch----HHHHHHHHHHHHhcCCCcEEEEEe
Confidence            77532    356889999999999999998865

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.39  E-value=2.2e-12  Score=117.04  Aligned_cols=95  Identities=14%  Similarity=0.109  Sum_probs=78.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.+ ++++|+|+|+|+.+++.|++..       .++.|+.+|+.+++...++||+|+.
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~  154 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASSHRLPFSDTSMDAIIR  154 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcchhhCCCCCCceeEEEE
Confidence            5788999999997 66666777753 7899999999999999998764       4579999999998876679999995


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .. +       ...++++.+.|||||.+++-.
T Consensus       155 ~~-~-------~~~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          155 IY-A-------PCKAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             ES-C-------CCCHHHHHHHEEEEEEEEEEE
T ss_pred             eC-C-------hhhHHHHHHhcCCCcEEEEEE
Confidence            43 2       125889999999999998866

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.39  E-value=2.9e-12  Score=114.52  Aligned_cols=102  Identities=12%  Similarity=0.143  Sum_probs=82.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc----cCcCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN----VSSALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~----l~~~l~~f  194 (318)
                      ..++.+|||||||+ |..++.+|+.+ +..+|+|+|+|+++++.|++.++.   . .++.|+.+|+.+    ++.. ..|
T Consensus        72 ~~~~~~VLDlGcG~-G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~---~-~~v~~~~~d~~~~~~~~~~~-~~~  144 (230)
T 1fbn_A           72 IKRDSKILYLGASA-GTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAE---R-ENIIPILGDANKPQEYANIV-EKV  144 (230)
T ss_dssp             CCTTCEEEEESCCS-SHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTT---C-TTEEEEECCTTCGGGGTTTS-CCE
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHHc-CCcEEEEEECCHHHHHHHHHHhhc---C-CCeEEEECCCCCcccccccC-ccE
Confidence            35788999999996 67778888764 468999999999999999998776   2 789999999987    5544 589


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      |+|+.+.  . +......+++++.+.|||||.+++-
T Consensus       145 D~v~~~~--~-~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          145 DVIYEDV--A-QPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEECC--C-STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEec--C-ChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            9999432  1 2344577899999999999999884

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.39  E-value=2.1e-12  Score=121.33  Aligned_cols=103  Identities=13%  Similarity=0.147  Sum_probs=87.0

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      .+|||||||+ |..+..+++++ |+.+++++|+ +.+++.|++.+.. .|+.++++|+.+|..+ +.. ++||+|++...
T Consensus       169 ~~vlDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~v  242 (334)
T 2ip2_A          169 RSFVDVGGGS-GELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSS-LLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRI  242 (334)
T ss_dssp             CEEEEETCTT-CHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHH-HHHTTSEEEEESCTTT-CCC-SSCSEEEEESC
T ss_pred             CEEEEeCCCc-hHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhh-cCCCCcEEEecCCCCC-CCC-CCCCEEEEchh
Confidence            8999999996 55667778765 8999999999 9999999999887 6777899999999987 333 47999997665


Q ss_pred             c-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          203 V-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       203 v-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      + .++.++..++++++++.|+|||++++.+
T Consensus       243 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          243 IGDLDEAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            4 4566677799999999999999998876

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.39  E-value=4.7e-13  Score=121.70  Aligned_cols=98  Identities=14%  Similarity=0.066  Sum_probs=80.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.+++   ++++|+|+|+|+.+++.|++..        +++|+++|+.+++...++||+|+.
T Consensus        33 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~d~~~~~~~~~~fD~v~~  100 (261)
T 3ege_A           33 PKGSVIADIGAGT-GGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP--------QVEWFTGYAENLALPDKSVDGVIS  100 (261)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT--------TEEEECCCTTSCCSCTTCBSEEEE
T ss_pred             CCCCEEEEEcCcc-cHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc--------CCEEEECchhhCCCCCCCEeEEEE
Confidence            6789999999996 666677886   6899999999999988765321        899999999998877779999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...++ ...+..++++++++.|| ||.+++-+
T Consensus       101 ~~~l~-~~~~~~~~l~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A          101 ILAIH-HFSHLEKSFQEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             ESCGG-GCSSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred             cchHh-hccCHHHHHHHHHHHhC-CcEEEEEE
Confidence            66442 22678899999999999 99776655

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.39  E-value=2.6e-12  Score=117.41  Aligned_cols=104  Identities=10%  Similarity=0.140  Sum_probs=86.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc---CcCCCCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV---SSALKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l---~~~l~~fD  195 (318)
                      +.++.+|||+|||+ |.++..+|+...|+.+|+|+|+++++++.+++.+++    ..++..+.+|+.+.   +.....+|
T Consensus        75 ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~----~~ni~~V~~d~~~p~~~~~~~~~vD  149 (233)
T 4df3_A           75 VKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD----RRNIFPILGDARFPEKYRHLVEGVD  149 (233)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT----CTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred             CCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh----hcCeeEEEEeccCccccccccceEE
Confidence            58999999999995 788889998777899999999999999999998776    25789999998753   33345799


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +||.+-.   ...++..++.++++.|||||.+++-
T Consensus       150 vVf~d~~---~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          150 GLYADVA---QPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEecc---CChhHHHHHHHHHHhccCCCEEEEE
Confidence            9986532   2367888999999999999998874

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.39  E-value=4.3e-12  Score=120.75  Aligned_cols=106  Identities=14%  Similarity=0.113  Sum_probs=89.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++++ |+.+++++|+ +.+++.|++.++. .|+.++++|+.+|+.+.+.  .++|+|++
T Consensus       189 ~~~~~vLDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~--~~~D~v~~  262 (359)
T 1x19_A          189 DGVKKMIDVGGGI-GDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAE-KGVADRMRGIAVDIYKESY--PEADAVLF  262 (359)
T ss_dssp             TTCCEEEEESCTT-CHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHH-TTCTTTEEEEECCTTTSCC--CCCSEEEE
T ss_pred             CCCCEEEEECCcc-cHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHh-cCCCCCEEEEeCccccCCC--CCCCEEEE
Confidence            6778999999996 56667788764 8999999999 9999999999988 7888899999999988643  34599987


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.++..++++++++.|||||++++.+
T Consensus       263 ~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          263 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             echhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            6544 4565668999999999999999997765

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.39  E-value=1.2e-12  Score=117.49  Aligned_cols=105  Identities=17%  Similarity=0.163  Sum_probs=87.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC-CCCCCeEEEEccccccCcCCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP-DLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~-gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ..++.+|||+|||+ |..++.+++...|+.+|+++|+|+++++.|++.++. . | ..+++|+.+|+.+.+...+.||+|
T Consensus        94 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~g-~~~v~~~~~d~~~~~~~~~~~D~v  170 (258)
T 2pwy_A           94 LAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA-FWQ-VENVRFHLGKLEEAELEEAAYDGV  170 (258)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-HCC-CCCEEEEESCGGGCCCCTTCEEEE
T ss_pred             CCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-hcC-CCCEEEEECchhhcCCCCCCcCEE
Confidence            36789999999996 666677887645789999999999999999999887 5 6 578999999999875444689999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +++.      .+..++++++.+.|+|||.+++-..
T Consensus       171 ~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          171 ALDL------MEPWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             EEES------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             EECC------cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            9753      2445789999999999999988764

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.39  E-value=3.9e-12  Score=112.60  Aligned_cols=109  Identities=11%  Similarity=0.120  Sum_probs=83.6

Q ss_pred             cCCCCEEEEEccC-CChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-cCCCCccE
Q 021008          119 SRFPTKIAFIGSG-PLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-SALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsG-plp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-~~l~~fD~  196 (318)
                      ..++.+||||||| + |..++.+|+..  +.+|+|+|+|+++++.|++++.. .|+  +++|+++|+..+. ...+.||+
T Consensus        53 ~~~~~~vLDlG~G~~-G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~-~~~--~v~~~~~d~~~~~~~~~~~fD~  126 (230)
T 3evz_A           53 LRGGEVALEIGTGHT-AMMALMAEKFF--NCKVTATEVDEEFFEYARRNIER-NNS--NVRLVKSNGGIIKGVVEGTFDV  126 (230)
T ss_dssp             CCSSCEEEEECCTTT-CHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHH-TTC--CCEEEECSSCSSTTTCCSCEEE
T ss_pred             cCCCCEEEEcCCCHH-HHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHH-hCC--CcEEEeCCchhhhhcccCceeE
Confidence            4688999999999 7 56667788753  89999999999999999999988 666  8999999975432 22358999


Q ss_pred             EEecccc-CC-----------------ChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          197 VFLAALV-GM-----------------DKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       197 V~~aalv-gm-----------------~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      |+..--. ..                 ......++++++.+.|||||.+++-..+
T Consensus       127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  181 (230)
T 3evz_A          127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD  181 (230)
T ss_dssp             EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred             EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence            9965211 10                 0122478999999999999999886543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.38  E-value=4.2e-12  Score=120.84  Aligned_cols=106  Identities=12%  Similarity=0.217  Sum_probs=87.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~~l~~fD~V~  198 (318)
                      .++.+|||||||. |..++.+++++ |+.+++++|+ +.+++.|++.+.. .|+.++++|+.+|+.+ ++.   .||+|+
T Consensus       181 ~~~~~vlDvG~G~-G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~---~~D~v~  253 (374)
T 1qzz_A          181 SAVRHVLDVGGGN-GGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFAD-AGLADRVTVAEGDFFKPLPV---TADVVL  253 (374)
T ss_dssp             TTCCEEEEETCTT-SHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHH-TTCTTTEEEEECCTTSCCSC---CEEEEE
T ss_pred             CCCCEEEEECCCc-CHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHh-cCCCCceEEEeCCCCCcCCC---CCCEEE
Confidence            5678999999996 56667788765 8999999999 9999999999988 7888899999999976 332   499998


Q ss_pred             ecccc-CCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +...+ .++.++..++++++++.|+|||++++.+.
T Consensus       254 ~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          254 LSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            76544 45556667999999999999998887554

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.38  E-value=1.3e-12  Score=117.65  Aligned_cols=105  Identities=14%  Similarity=0.110  Sum_probs=77.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCC-hHHHHHH---HHHhhcCCCCCCCeEEEEccccccCcCC-CC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDID-PSANSKA---LSLVSSDPDLSTRMFFHTTDIMNVSSAL-KD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid-~~ai~~A---r~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~  193 (318)
                      ..++.+|||||||+ |..++.+|++ .++++|+|||+| +.+++.|   ++.+.. .|+ .+++|+++|+.+++... +.
T Consensus        22 ~~~~~~vLDiGCG~-G~~~~~la~~-~~~~~v~GvD~s~~~ml~~A~~A~~~~~~-~~~-~~v~~~~~d~~~l~~~~~d~   97 (225)
T 3p2e_A           22 GQFDRVHIDLGTGD-GRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSK-GGL-SNVVFVIAAAESLPFELKNI   97 (225)
T ss_dssp             TTCSEEEEEETCTT-SHHHHHHHHT-CTTEEEEEECSCCGGGHHHHHHHTSCGGG-TCC-SSEEEECCBTTBCCGGGTTC
T ss_pred             CCCCCEEEEEeccC-cHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHH-cCC-CCeEEEEcCHHHhhhhccCe
Confidence            36788999999996 6666788865 389999999999 5555555   877776 666 47999999999986422 34


Q ss_pred             ccEEEeccccCCCh------hHHHHHHHHHHHhccCCeEEEE
Q 021008          194 YEVVFLAALVGMDK------DEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       194 fD~V~~aalvgm~~------~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +|.|++..  .++.      .+..+++++++++|||||++++
T Consensus        98 v~~i~~~~--~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           98 ADSISILF--PWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEEEEEES--CCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEEEeC--CCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            55555321  1111      1225689999999999999988

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.38  E-value=5.9e-13  Score=118.70  Aligned_cols=105  Identities=14%  Similarity=0.147  Sum_probs=82.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||+|||. |.+|+.++.. .|+++|+++|+|+.+++.++++++. .|.+.+++|  +|..+.+ .-++||+|+.
T Consensus        48 ~~~~~VLDlGCG~-GplAl~l~~~-~p~a~~~A~Di~~~~leiar~~~~~-~g~~~~v~~--~d~~~~~-~~~~~DvVLa  121 (200)
T 3fzg_A           48 KHVSSILDFGCGF-NPLALYQWNE-NEKIIYHAYDIDRAEIAFLSSIIGK-LKTTIKYRF--LNKESDV-YKGTYDVVFL  121 (200)
T ss_dssp             CCCSEEEEETCTT-HHHHHHHHCS-SCCCEEEEECSCHHHHHHHHHHHHH-SCCSSEEEE--ECCHHHH-TTSEEEEEEE
T ss_pred             CCCCeEEEecCCC-CHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHh-cCCCccEEE--ecccccC-CCCCcChhhH
Confidence            6789999999995 6666777754 4899999999999999999999998 788777887  5665432 2347999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+++. ..+....+..+++.|+|||++|-..
T Consensus       122 ~k~LHl-L~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          122 LKMLPV-LKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             ETCHHH-HHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             hhHHHh-hhhhHHHHHHHHHHhCCCCEEEEeC
Confidence            665532 2555667779999999999998765

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.38  E-value=2.8e-12  Score=113.69  Aligned_cols=104  Identities=13%  Similarity=0.127  Sum_probs=82.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cC-CCCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SA-LKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~-l~~fD  195 (318)
                      ..++.+|||+|||+ |..++.+|+.+.++.+|+|+|+|+++++.+++.++. .   .+++|+++|+.+..  .. .+.||
T Consensus        71 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-~---~~v~~~~~d~~~~~~~~~~~~~~D  145 (227)
T 1g8a_A           71 IKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-R---RNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-C---TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             CCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-c---CCCEEEEccCCCcchhhcccCCce
Confidence            36788999999996 666678887654568999999999999999998876 2   68999999998732  11 24799


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +|+.+..   .......++.++.+.|||||.+++.
T Consensus       146 ~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          146 VIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            9997653   2233345599999999999998886

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.37  E-value=1.9e-12  Score=118.41  Aligned_cols=99  Identities=17%  Similarity=0.125  Sum_probs=81.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++   ++++|+|+|+|+.+++.|++..       .+++|+++|+.+++. .++||+|+.
T Consensus        56 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~fD~v~~  123 (279)
T 3ccf_A           56 QPGEFILDLGCGT-GQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-------PHLHFDVADARNFRV-DKPLDAVFS  123 (279)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-------TTSCEEECCTTTCCC-SSCEEEEEE
T ss_pred             CCCCEEEEecCCC-CHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-------CCCEEEECChhhCCc-CCCcCEEEE
Confidence            6788999999996 566667776   6899999999999999998764       468899999999875 358999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...++. ..+..++++++++.|||||.+++..
T Consensus       124 ~~~l~~-~~d~~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          124 NAMLHW-VKEPEAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             ESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhh-CcCHHHHHHHHHHhcCCCcEEEEEe
Confidence            654421 2467789999999999999998865

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.37  E-value=2.6e-12  Score=114.71  Aligned_cols=104  Identities=11%  Similarity=0.115  Sum_probs=82.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc---cCcCCCCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN---VSSALKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~---l~~~l~~fD  195 (318)
                      ..++.+|||||||+ |..+..+|+.+.++.+|+|+|+|+.+++.+.+.++. .   .+++|+++|+.+   ++...+.||
T Consensus        75 ~~~~~~vLDlG~G~-G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-~---~~v~~~~~d~~~~~~~~~~~~~~D  149 (233)
T 2ipx_A           75 IKPGAKVLYLGAAS-GTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-R---TNIIPVIEDARHPHKYRMLIAMVD  149 (233)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-C---TTEEEECSCTTCGGGGGGGCCCEE
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-c---CCeEEEEcccCChhhhcccCCcEE
Confidence            36788999999996 666678887654678999999999998888888776 2   689999999987   333345899


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +|+.+..   .......++.++.+.|||||.+++.
T Consensus       150 ~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          150 VIFADVA---QPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             EEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEE
Confidence            9997643   2344456788999999999999884

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.37  E-value=1e-12  Score=121.59  Aligned_cols=109  Identities=12%  Similarity=0.222  Sum_probs=78.7

Q ss_pred             CCCCEEEEEccCCChHHHHH---HHHhCCCCcEE--EEEeCChHHHHHHHHHhhcCCCCCCCe--EEEEccccccC----
Q 021008          120 RFPTKIAFIGSGPLPLTSIV---LAINHLTTTCF--DNYDIDPSANSKALSLVSSDPDLSTRM--FFHTTDIMNVS----  188 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~---LA~~~~~ga~V--~gvDid~~ai~~Ar~~~~~~~gl~~ri--~f~~gDa~~l~----  188 (318)
                      .++.||||||||++.+|...   ++.++ ++++|  +|+|+|+++++.|++.++...++ .++  .+..+++.+++    
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~-~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQY-PGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHS-TTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhC-CCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhc
Confidence            45679999999976555322   23333 67755  99999999999999988752244 344  55677776654    


Q ss_pred             --cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          189 --SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       189 --~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                        +..++||+|+....++ ..++..+++++++++|||||.+++-.
T Consensus       129 ~~~~~~~fD~V~~~~~l~-~~~d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLY-YVKDIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             TTTCCCCEEEEEEESCGG-GCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccCCCceeEEEEeeeee-ecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence              3456899999765443 23577889999999999999998753

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.37  E-value=1.4e-12  Score=124.70  Aligned_cols=109  Identities=16%  Similarity=0.202  Sum_probs=86.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC--CC-CCCeEEEEccccccCcC--CCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP--DL-STRMFFHTTDIMNVSSA--LKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~--gl-~~ri~f~~gDa~~l~~~--l~~f  194 (318)
                      ..+++||+||||. |..++.+++ +.++.+|++||+|+++++.|++.+.. .  |+ ..+++|+++|+.+....  .+.|
T Consensus       119 ~~~~~VLdIG~G~-G~~a~~la~-~~~~~~V~~VDis~~~l~~Ar~~~~~-~~~gl~~~rv~~~~~D~~~~l~~~~~~~f  195 (334)
T 1xj5_A          119 PNPKKVLVIGGGD-GGVLREVAR-HASIEQIDMCEIDKMVVDVSKQFFPD-VAIGYEDPRVNLVIGDGVAFLKNAAEGSY  195 (334)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHH-HHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred             CCCCEEEEECCCc-cHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHh-hccccCCCcEEEEECCHHHHHHhccCCCc
Confidence            5789999999995 677778886 34678999999999999999998764 2  34 46899999999875222  3589


Q ss_pred             cEEEeccccCCChhH---HHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDE---KIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~---k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+++...+....+   ..++++++.+.|+|||+|++..
T Consensus       196 DlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          196 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            999987643222122   5789999999999999999974

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.37  E-value=2.4e-12  Score=114.62  Aligned_cols=124  Identities=15%  Similarity=0.127  Sum_probs=90.0

Q ss_pred             HHHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH
Q 021008           80 FSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA  159 (318)
Q Consensus        80 ~A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a  159 (318)
                      +++.......+|+....-|....+..   .-...+    ..++.+|||||||+ |..+..+++.   +++|+|+|+|+.+
T Consensus        14 ~~~~~g~y~~~~~~~~~~~~~~~l~~---~~~~~~----~~~~~~vLDiGcG~-G~~~~~l~~~---~~~v~~vD~s~~~   82 (226)
T 3m33_A           14 LARELGGYRHPWARVLSGPDPELTFD---LWLSRL----LTPQTRVLEAGCGH-GPDAARFGPQ---AARWAAYDFSPEL   82 (226)
T ss_dssp             HHHHHTTTSCCSCCEESSSCTTHHHH---HHHHHH----CCTTCEEEEESCTT-SHHHHHHGGG---SSEEEEEESCHHH
T ss_pred             HHHHhchhhhhhccccCCCCHHHHHH---HHHHhc----CCCCCeEEEeCCCC-CHHHHHHHHc---CCEEEEEECCHHH
Confidence            44444455556655444444433322   222211    36789999999996 6666778864   8899999999999


Q ss_pred             HHHHHHHhhcCCCCCCCeEEEEccc-cccCcC-CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          160 NSKALSLVSSDPDLSTRMFFHTTDI-MNVSSA-LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       160 i~~Ar~~~~~~~gl~~ri~f~~gDa-~~l~~~-l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      ++.|++.  .     .+++|+++|+ ..++.. .++||+|+...       +..++++++.+.|||||.++
T Consensus        83 ~~~a~~~--~-----~~~~~~~~d~~~~~~~~~~~~fD~v~~~~-------~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A           83 LKLARAN--A-----PHADVYEWNGKGELPAGLGAPFGLIVSRR-------GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             HHHHHHH--C-----TTSEEEECCSCSSCCTTCCCCEEEEEEES-------CCSGGGGGHHHHEEEEEEEE
T ss_pred             HHHHHHh--C-----CCceEEEcchhhccCCcCCCCEEEEEeCC-------CHHHHHHHHHHHcCCCcEEE
Confidence            9999987  2     4689999999 456666 56899998652       45678999999999999998

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.36  E-value=2.1e-12  Score=113.67  Aligned_cols=104  Identities=11%  Similarity=0.099  Sum_probs=81.8

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCcCCCCccEEEe
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSSALKDYEVVFL  199 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~~l~~fD~V~~  199 (318)
                      ++.+|||+|||+ |..++.++++  ...+|+++|+|+++++.|++.++. .|+ .+++|+++|+.+ ++...+.||+|++
T Consensus        54 ~~~~vLDlgcG~-G~~~~~l~~~--~~~~V~~vD~s~~~l~~a~~~~~~-~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~  128 (202)
T 2fpo_A           54 VDAQCLDCFAGS-GALGLEALSR--YAAGATLIEMDRAVSQQLIKNLAT-LKA-GNARVVNSNAMSFLAQKGTPHNIVFV  128 (202)
T ss_dssp             TTCEEEETTCTT-CHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHH-TTC-CSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             CCCeEEEeCCCc-CHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHH-cCC-CcEEEEECCHHHHHhhcCCCCCEEEE
Confidence            678999999996 5555655553  135999999999999999999988 677 789999999988 4444458999998


Q ss_pred             ccccCCChhHHHHHHHHHHH--hccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAK--YMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r--~LkpGg~lv~r~  231 (318)
                      +...+  .....++++.+.+  .|+|||++++..
T Consensus       129 ~~p~~--~~~~~~~l~~l~~~~~L~pgG~l~i~~  160 (202)
T 2fpo_A          129 DPPFR--RGLLEETINLLEDNGWLADEALIYVES  160 (202)
T ss_dssp             CCSSS--TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             CCCCC--CCcHHHHHHHHHhcCccCCCcEEEEEE
Confidence            75322  3456778888866  499999998765

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.36  E-value=2e-12  Score=117.96  Aligned_cols=106  Identities=14%  Similarity=0.105  Sum_probs=87.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC-C-CCCCeEEEEccccccCcCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP-D-LSTRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~-g-l~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      ..++.+|||||||. |..++.+++...++.+|+++|+|+++++.|++.++. . | +..+++++.+|+.+.+...+.||+
T Consensus        97 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~g~~~~~v~~~~~d~~~~~~~~~~~D~  174 (280)
T 1i9g_A           97 IFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG-CYGQPPDNWRLVVSDLADSELPDGSVDR  174 (280)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-HHTSCCTTEEEECSCGGGCCCCTTCEEE
T ss_pred             CCCCCEEEEEcccc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-hcCCCCCcEEEEECchHhcCCCCCceeE
Confidence            36788999999996 555567787555789999999999999999999887 4 3 557899999999987655568999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+++.      .+..++++++.+.|+|||.+++-..
T Consensus       175 v~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          175 AVLDM------LAPWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             EEEES------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             EEECC------cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            99753      2344789999999999999988663

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.36  E-value=1.7e-12  Score=120.20  Aligned_cols=102  Identities=11%  Similarity=0.046  Sum_probs=85.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++++|||+|||+++ -++.+|+.   ++ +|+|+|+|+.+++.|+++++. .|+.++++|+++|+.+++. .+.||+|+
T Consensus       124 ~~~~~VLDlgcG~G~-~~~~la~~---~~~~V~~vD~s~~~~~~a~~n~~~-n~~~~~v~~~~~D~~~~~~-~~~fD~Vi  197 (278)
T 2frn_A          124 KPDELVVDMFAGIGH-LSLPIAVY---GKAKVIAIEKDPYTFKFLVENIHL-NKVEDRMSAYNMDNRDFPG-ENIADRIL  197 (278)
T ss_dssp             CTTCEEEETTCTTTT-THHHHHHH---TCCEEEEECCCHHHHHHHHHHHHH-TTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred             CCCCEEEEecccCCH-HHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHH-cCCCceEEEEECCHHHhcc-cCCccEEE
Confidence            668999999999755 45677774   33 799999999999999999998 7888889999999999865 45899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++..     ....+++.++.+.|+|||.+++.+.
T Consensus       198 ~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~  226 (278)
T 2frn_A          198 MGYV-----VRTHEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             ECCC-----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCc-----hhHHHHHHHHHHHCCCCeEEEEEEe
Confidence            8642     2346789999999999999998663

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.36  E-value=3.9e-12  Score=121.64  Aligned_cols=106  Identities=12%  Similarity=0.134  Sum_probs=86.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|||||||+ |..++.+|+.  +..+|+|+|+|+ +++.|++.++. .|+.++++|+++|+.+++...++||+|+.
T Consensus        65 ~~~~~VLDvGcG~-G~~~~~la~~--g~~~v~gvD~s~-~l~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~Iis  139 (349)
T 3q7e_A           65 FKDKVVLDVGSGT-GILCMFAAKA--GARKVIGIECSS-ISDYAVKIVKA-NKLDHVVTIIKGKVEEVELPVEKVDIIIS  139 (349)
T ss_dssp             HTTCEEEEESCTT-SHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHH-TTCTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred             CCCCEEEEEeccc-hHHHHHHHHC--CCCEEEEECcHH-HHHHHHHHHHH-cCCCCcEEEEECcHHHccCCCCceEEEEE
Confidence            5789999999996 5566778874  445999999995 99999999998 88989999999999998766679999997


Q ss_pred             cccc--CCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AALV--GMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalv--gm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      ..+.  .........++..+.+.|||||.++..
T Consensus       140 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          140 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            5421  113357788999999999999998743

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.36  E-value=3.9e-12  Score=118.56  Aligned_cols=109  Identities=8%  Similarity=0.016  Sum_probs=83.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC------CCCCeEEEEccccccC----c
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD------LSTRMFFHTTDIMNVS----S  189 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g------l~~ri~f~~gDa~~l~----~  189 (318)
                      .++.+|||||||++.++ ..+++.  ++.+|+|+|+|+++++.|++.... .+      ...+++|+++|+.+++    .
T Consensus        33 ~~~~~VLDlGcG~G~~~-~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~  108 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDL-LKWKKG--RINKLVCTDIADVSVKQCQQRYED-MKNRRDSEYIFSAEFITADSSKELLIDKF  108 (313)
T ss_dssp             --CCEEEEETCTTTTTH-HHHHHT--TCSEEEEEESCHHHHHHHHHHHHH-HHSSSCC-CCCEEEEEECCTTTSCSTTTC
T ss_pred             CCCCEEEEECCCCcHHH-HHHHhc--CCCEEEEEeCCHHHHHHHHHHHHH-hhhcccccccceEEEEEecccccchhhhc
Confidence            47889999999975555 556653  588999999999999999988764 21      2357999999999875    3


Q ss_pred             C--CCCccEEEeccccC-C--ChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          190 A--LKDYEVVFLAALVG-M--DKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       190 ~--l~~fD~V~~aalvg-m--~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .  .++||+|+....++ +  +.++..++++++++.|||||.+++...
T Consensus       109 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          109 RDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             SSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            2  23899999765442 2  446678999999999999999988663

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.36  E-value=3.2e-12  Score=115.47  Aligned_cols=108  Identities=12%  Similarity=0.049  Sum_probs=81.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC--------CCCCCeEEEEccccc-cC--
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP--------DLSTRMFFHTTDIMN-VS--  188 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~--------gl~~ri~f~~gDa~~-l~--  188 (318)
                      .++.+|||||||. |..++.+|+.. +++.|+|||+|+.+++.|++.++. .        |+ .+++|+++|+.+ ++  
T Consensus        48 ~~~~~vLDiGcG~-G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~-~nv~~~~~D~~~~l~~~  123 (246)
T 2vdv_E           48 TKKVTIADIGCGF-GGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIA-LRNNTASKHGF-QNINVLRGNAMKFLPNF  123 (246)
T ss_dssp             SCCEEEEEETCTT-SHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHH-HHHTC-CCSTT-TTEEEEECCTTSCGGGT
T ss_pred             CCCCEEEEEcCCC-CHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHH-HhhccccccCC-CcEEEEeccHHHHHHHh
Confidence            5778999999996 55557788764 788999999999999999988765 3        55 579999999987 55  


Q ss_pred             cCCCCccEEEeccccCCChhH-------HHHHHHHHHHhccCCeEEEEEc
Q 021008          189 SALKDYEVVFLAALVGMDKDE-------KIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       189 ~~l~~fD~V~~aalvgm~~~~-------k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+.+.||.|++..--.+.+..       ..++++++.+.|+|||.|++..
T Consensus       124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            345589988854211111100       0479999999999999998865

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.36  E-value=1.2e-12  Score=121.63  Aligned_cols=107  Identities=11%  Similarity=0.100  Sum_probs=83.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC--CC--------CCCeEEEEccccccCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP--DL--------STRMFFHTTDIMNVSS  189 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~--gl--------~~ri~f~~gDa~~l~~  189 (318)
                      ..+++||+||||. |..++.+++ + +..+|++||+|+++++.|++.+ . .  ++        ..+++++.+|+.+...
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~-~-~~~~v~~vDid~~~i~~ar~~~-~-~~~~l~~~~~~~~~~~v~~~~~D~~~~l~  148 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQ-H-DVDEVIMVEIDEDVIMVSKDLI-K-IDNGLLEAMLNGKHEKAKLTIGDGFEFIK  148 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTT-S-CCSEEEEEESCHHHHHHHHHHT-C-TTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHh-C-CCCEEEEEECCHHHHHHHHHHH-h-hccccccccccCCCCcEEEEECchHHHhc
Confidence            5789999999995 666677775 4 6789999999999999999988 4 3  43        5789999999986422


Q ss_pred             CCCCccEEEeccccCCCh-hH--HHHHHHHHHHhccCCeEEEEEc
Q 021008          190 ALKDYEVVFLAALVGMDK-DE--KIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalvgm~~-~~--k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+.||+|+++...+... ..  ..++++.+++.|+|||++++..
T Consensus       149 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          149 NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            235899999887532211 11  3679999999999999999975

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.36  E-value=3.1e-12  Score=116.34  Aligned_cols=108  Identities=12%  Similarity=0.075  Sum_probs=88.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|+|||||. |.-++.+|+. .|..+|+++|+|+.+++.|+++++. .|+.++++|+.+|+.+.......||+|++
T Consensus        14 ~~g~~VlDIGtGs-G~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~-~gl~~~i~~~~~d~l~~l~~~~~~D~Ivi   90 (225)
T 3kr9_A           14 SQGAILLDVGSDH-AYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEA-HGLKEKIQVRLANGLAAFEETDQVSVITI   90 (225)
T ss_dssp             CTTEEEEEETCST-THHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHH-TTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCCEEEEeCCCc-HHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH-cCCCceEEEEECchhhhcccCcCCCEEEE
Confidence            6778999999996 5666788875 4778999999999999999999999 89999999999999753222126999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      +..   -..--.+++++..++|+|||.|++..-.
T Consensus        91 aG~---Gg~~i~~Il~~~~~~L~~~~~lVlq~~~  121 (225)
T 3kr9_A           91 AGM---GGRLIARILEEGLGKLANVERLILQPNN  121 (225)
T ss_dssp             EEE---CHHHHHHHHHHTGGGCTTCCEEEEEESS
T ss_pred             cCC---ChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence            753   2234578999999999999999996643

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.36  E-value=4.2e-12  Score=116.81  Aligned_cols=109  Identities=16%  Similarity=0.098  Sum_probs=90.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||. |+-++.+|+. .+..+|+++|+|+.+++.|+++++. .|+.++++++.+|+.+...+...||+|++
T Consensus        20 ~~g~~VlDIGtGs-G~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~-~gl~~~I~v~~gD~l~~~~~~~~~D~Ivi   96 (244)
T 3gnl_A           20 TKNERIADIGSDH-AYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRS-SGLTEQIDVRKGNGLAVIEKKDAIDTIVI   96 (244)
T ss_dssp             CSSEEEEEETCST-THHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHH-TTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCCEEEEECCcc-HHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH-cCCCceEEEEecchhhccCccccccEEEE
Confidence            6778999999997 5556788875 4677999999999999999999998 89999999999999987543336999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      +..   -..-=.+++++..++|++++.|++-.-.+
T Consensus        97 agm---Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~  128 (244)
T 3gnl_A           97 AGM---GGTLIRTILEEGAAKLAGVTKLILQPNIA  128 (244)
T ss_dssp             EEE---CHHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred             eCC---chHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            653   23556789999999999999999976433

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.36  E-value=7e-13  Score=113.02  Aligned_cols=107  Identities=9%  Similarity=0.012  Sum_probs=83.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc----CCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS----ALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~----~l~~fD  195 (318)
                      .++.+|||+|||+ |..++.++++  +..+|+|+|+|+++++.|++.+.. .++.++++|+++|+.+...    ..+.||
T Consensus        43 ~~~~~vLD~GcG~-G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~fD  118 (187)
T 2fhp_A           43 FDGGMALDLYSGS-GGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAI-TKEPEKFEVRKMDANRALEQFYEEKLQFD  118 (187)
T ss_dssp             CSSCEEEETTCTT-CHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHH-HTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCCEEEeCCcc-CHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHH-hCCCcceEEEECcHHHHHHHHHhcCCCCC
Confidence            4778999999996 5555666663  457999999999999999999987 6777789999999987422    245899


Q ss_pred             EEEeccccCCChhHHHHHHHHH--HHhccCCeEEEEEcC
Q 021008          196 VVFLAALVGMDKDEKIRVIDHL--AKYMAPGALLMLRSA  232 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l--~r~LkpGg~lv~r~~  232 (318)
                      +|+......  .....+++..+  .+.|+|||.+++...
T Consensus       119 ~i~~~~~~~--~~~~~~~~~~l~~~~~L~~gG~l~~~~~  155 (187)
T 2fhp_A          119 LVLLDPPYA--KQEIVSQLEKMLERQLLTNEAVIVCETD  155 (187)
T ss_dssp             EEEECCCGG--GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EEEECCCCC--chhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence            999764211  23455677777  888999999988764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.36  E-value=3.3e-12  Score=116.26  Aligned_cols=106  Identities=14%  Similarity=0.087  Sum_probs=84.5

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC--CCCccEEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA--LKDYEVVF  198 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~--l~~fD~V~  198 (318)
                      ++.+|||||||+ |..++.+|++  ...+|+|+|+|+.+++.|++++.. .++.++++|+++|+.+++..  .++||+|+
T Consensus        49 ~~~~vLDlG~G~-G~~~~~la~~--~~~~v~gvDi~~~~~~~a~~n~~~-~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           49 RKGKIIDLCSGN-GIIPLLLSTR--TKAKIVGVEIQERLADMAKRSVAY-NQLEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             SCCEEEETTCTT-THHHHHHHTT--CCCEEEEECCSHHHHHHHHHHHHH-TTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCEEEEcCCch-hHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHH-CCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence            689999999996 5666778875  244999999999999999999998 88988999999999987643  35899999


Q ss_pred             ecccc------CC-------------ChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          199 LAALV------GM-------------DKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       199 ~aalv------gm-------------~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      ..--.      +.             ......++++.+.+.|||||++++-
T Consensus       125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  175 (259)
T 3lpm_A          125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV  175 (259)
T ss_dssp             ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence            74210      00             0123467999999999999999884

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.36  E-value=6.4e-12  Score=111.10  Aligned_cols=100  Identities=9%  Similarity=0.113  Sum_probs=80.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..++++   +.+|+|+|+|+++++.|++..       .+++|+++|+.+++. .+.||+|+.
T Consensus        39 ~~~~~vLdiG~G~-G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~~D~v~~  106 (239)
T 3bxo_A           39 PEASSLLDVACGT-GTHLEHFTKE---FGDTAGLELSEDMLTHARKRL-------PDATLHQGDMRDFRL-GRKFSAVVS  106 (239)
T ss_dssp             TTCCEEEEETCTT-SHHHHHHHHH---HSEEEEEESCHHHHHHHHHHC-------TTCEEEECCTTTCCC-SSCEEEEEE
T ss_pred             CCCCeEEEecccC-CHHHHHHHHh---CCcEEEEeCCHHHHHHHHHhC-------CCCEEEECCHHHccc-CCCCcEEEE
Confidence            5779999999996 5555677765   349999999999999998764       358999999998865 458999993


Q ss_pred             -c-cccCC-ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 -A-ALVGM-DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 -a-alvgm-~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       . .+.++ +.++..++++++++.|+|||.+++..
T Consensus       107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          107 MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             cCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence             3 33333 34678899999999999999999975

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.35  E-value=2.7e-12  Score=112.01  Aligned_cols=100  Identities=17%  Similarity=0.226  Sum_probs=81.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc---CcCCC-Ccc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV---SSALK-DYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l---~~~l~-~fD  195 (318)
                      .++.+|||||||+ |..+..+++.   |++|+|+|+|+.+++.|++.        .+++++.+|+.++   +...+ .||
T Consensus        51 ~~~~~vLdiG~G~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           51 RQPERVLDLGCGE-GWLLRALADR---GIEAVGVDGDRTLVDAARAA--------GAGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             TCCSEEEEETCTT-CHHHHHHHTT---TCEEEEEESCHHHHHHHHHT--------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             CCCCEEEEeCCCC-CHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh--------cccccchhhHHhhcccccccCCCcc
Confidence            5779999999996 5666777763   88999999999999999876        4467889999887   44444 599


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      +|+....+.  ..+..++++++++.|||||.+++...+
T Consensus       119 ~v~~~~~l~--~~~~~~~l~~~~~~L~pgG~l~~~~~~  154 (227)
T 3e8s_A          119 LICANFALL--HQDIIELLSAMRTLLVPGGALVIQTLH  154 (227)
T ss_dssp             EEEEESCCC--SSCCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECchhh--hhhHHHHHHHHHHHhCCCeEEEEEecC
Confidence            999766544  357789999999999999999997743

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.35  E-value=2.2e-12  Score=118.63  Aligned_cols=104  Identities=17%  Similarity=0.158  Sum_probs=84.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC-CCCCCeEEEEccccccCcCCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP-DLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~-gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ..++.+|||+|||+ |..++.+++...++.+|+++|+|+++++.|++.++. . |. .+++|+++|+.+ +...+.||+|
T Consensus       108 ~~~~~~VLD~G~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~g~-~~v~~~~~d~~~-~~~~~~fD~V  183 (275)
T 1yb2_A          108 LRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE-FYDI-GNVRTSRSDIAD-FISDQMYDAV  183 (275)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT-TSCC-TTEEEECSCTTT-CCCSCCEEEE
T ss_pred             CCCcCEEEEecCCC-CHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh-cCCC-CcEEEEECchhc-cCcCCCccEE
Confidence            36778999999996 555567777534789999999999999999999987 5 63 689999999988 3344589999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +++.      ++..++++++.+.|||||.+++-..
T Consensus       184 i~~~------~~~~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          184 IADI------PDPWNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             EECC------SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             EEcC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            9742      3456899999999999999988764

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.34  E-value=2.2e-13  Score=117.97  Aligned_cols=106  Identities=11%  Similarity=0.082  Sum_probs=64.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-----CCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-----KDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-----~~f  194 (318)
                      .++.+|||||||+ |..++.+++. .++++|+|+|+|+.+++.|++.+.. .|.  +++|+++|+.+. ...     ++|
T Consensus        29 ~~~~~vLDiG~G~-G~~~~~l~~~-~~~~~v~~vD~~~~~~~~a~~~~~~-~~~--~~~~~~~d~~~~-~~~~~~~~~~f  102 (215)
T 4dzr_A           29 PSGTRVIDVGTGS-GCIAVSIALA-CPGVSVTAVDLSMDALAVARRNAER-FGA--VVDWAAADGIEW-LIERAERGRPW  102 (215)
T ss_dssp             CTTEEEEEEESSB-CHHHHHHHHH-CTTEEEEEEECC----------------------CCHHHHHHH-HHHHHHTTCCB
T ss_pred             CCCCEEEEecCCH-hHHHHHHHHh-CCCCeEEEEECCHHHHHHHHHHHHH-hCC--ceEEEEcchHhh-hhhhhhccCcc
Confidence            5788999999996 5666778876 4789999999999999999999887 555  899999999873 332     689


Q ss_pred             cEEEeccc-------cCCChhH------------------HHHHHHHHHHhccCCeE-EEEEc
Q 021008          195 EVVFLAAL-------VGMDKDE------------------KIRVIDHLAKYMAPGAL-LMLRS  231 (318)
Q Consensus       195 D~V~~aal-------vgm~~~~------------------k~~vl~~l~r~LkpGg~-lv~r~  231 (318)
                      |+|+..--       ..++...                  ..++++++.++|||||. +++..
T Consensus       103 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  165 (215)
T 4dzr_A          103 HAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV  165 (215)
T ss_dssp             SEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred             cEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            99997310       0111111                  17899999999999999 66644

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.34  E-value=2.6e-12  Score=117.90  Aligned_cols=105  Identities=19%  Similarity=0.116  Sum_probs=87.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||+|||+ |..++.+++...|+.+|+++|+|+++++.|+++++. .|+..+++++.+|+.+. ...+.||+|+
T Consensus       110 ~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~-~~~~~~D~V~  186 (277)
T 1o54_A          110 VKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK-WGLIERVTIKVRDISEG-FDEKDVDALF  186 (277)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH-TTCGGGEEEECCCGGGC-CSCCSEEEEE
T ss_pred             CCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-cCCCCCEEEEECCHHHc-ccCCccCEEE
Confidence            36788999999997 566677887655789999999999999999999988 77778999999999886 3335799999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++.      ++..++++++.+.|+|||.+++-..
T Consensus       187 ~~~------~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          187 LDV------PDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             ECC------SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             ECC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            753      3445799999999999999998764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.34  E-value=2.2e-12  Score=117.78  Aligned_cols=109  Identities=16%  Similarity=0.134  Sum_probs=79.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCC-C-----------------------
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPD-L-----------------------  173 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~g-l-----------------------  173 (318)
                      ..++.+|||||||++-++ +.+++   .|+ +|+|+|+|+.+++.|++.++...+ .                       
T Consensus        53 ~~~g~~vLDiGCG~G~~~-~~~~~---~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~  128 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQ-VLAAC---DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE  128 (263)
T ss_dssp             SCCEEEEEESSCTTCCGG-GTTGG---GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred             CCCCceEEEeCCCccHHH-HHHHH---hhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHH
Confidence            357789999999984344 44544   365 699999999999999987654111 1                       


Q ss_pred             ---CCCeE-EEEcccccc-Cc---CCCCccEEEecccc---CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          174 ---STRMF-FHTTDIMNV-SS---ALKDYEVVFLAALV---GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       174 ---~~ri~-f~~gDa~~l-~~---~l~~fD~V~~aalv---gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                         ..+++ ++.+|+.+. +.   ..++||+|+....+   .-+.++..++++++++.|||||.|++..
T Consensus       129 ~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          129 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence               11344 999999873 32   24589999965322   1134678899999999999999999986

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.34  E-value=6.1e-12  Score=112.23  Aligned_cols=102  Identities=13%  Similarity=0.123  Sum_probs=85.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+||++|||. |..++.+++.   +.+|+++|+|+++++.|++..+. .|+..+++++.+|+.+.......||+|+.
T Consensus        90 ~~~~~vldiG~G~-G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  164 (248)
T 2yvl_A           90 NKEKRVLEFGTGS-GALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKK-FNLGKNVKFFNVDFKDAEVPEGIFHAAFV  164 (248)
T ss_dssp             CTTCEEEEECCTT-SHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHH-TTCCTTEEEECSCTTTSCCCTTCBSEEEE
T ss_pred             CCCCEEEEeCCCc-cHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHH-cCCCCcEEEEEcChhhcccCCCcccEEEE
Confidence            6789999999995 6667778874   88999999999999999999988 78878999999999885423358999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +.      .+..++++++.+.|+|||++++-..
T Consensus       165 ~~------~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          165 DV------REPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             CS------SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             CC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            53      2446789999999999999988764

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.34  E-value=1.8e-12  Score=120.33  Aligned_cols=112  Identities=13%  Similarity=0.138  Sum_probs=85.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC-CCC-CCCeEEEEcccccc-CcCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD-PDL-STRMFFHTTDIMNV-SSALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-~gl-~~ri~f~~gDa~~l-~~~l~~fD~  196 (318)
                      ..+++||+||||. |..++.+++ +.+..+|++||+|+++++.|++.+... .++ ..|++++.+|+.+. +...+.||+
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~  151 (275)
T 1iy9_A           74 PNPEHVLVVGGGD-GGVIREILK-HPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV  151 (275)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTT-CTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             CCCCEEEEECCch-HHHHHHHHh-CCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeE
Confidence            5789999999995 666677775 335689999999999999999987530 123 47999999999873 333358999


Q ss_pred             EEeccccCCChh---HHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          197 VFLAALVGMDKD---EKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       197 V~~aalvgm~~~---~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      |+++...+....   ...++++++.+.|+|||++++....
T Consensus       152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            998864321110   1367999999999999999998644

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.34  E-value=1.5e-12  Score=115.23  Aligned_cols=105  Identities=12%  Similarity=0.149  Sum_probs=84.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCC----CCcEEEEEeCChHHHHHHHHHhhcCCCC----CCCeEEEEccccccC--
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHL----TTTCFDNYDIDPSANSKALSLVSSDPDL----STRMFFHTTDIMNVS--  188 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~----~ga~V~gvDid~~ai~~Ar~~~~~~~gl----~~ri~f~~gDa~~l~--  188 (318)
                      ..++.+||+||||+ |..+..+++...    ++++|+++|+|+++++.|++.++. .++    ..+++|+++|+.+..  
T Consensus        78 ~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~  155 (227)
T 2pbf_A           78 LKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKR-DKPELLKIDNFKIIHKNIYQVNEE  155 (227)
T ss_dssp             SCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHH-HCGGGGSSTTEEEEECCGGGCCHH
T ss_pred             CCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHH-cCccccccCCEEEEECChHhcccc
Confidence            36789999999996 666778887643    557999999999999999999887 553    468999999998854  


Q ss_pred             --cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          189 --SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       189 --~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                        ...+.||+|++.+...       .+++++.+.|||||++++-..
T Consensus       156 ~~~~~~~fD~I~~~~~~~-------~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          156 EKKELGLFDAIHVGASAS-------ELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHHCCEEEEEECSBBS-------SCCHHHHHHEEEEEEEEEEEE
T ss_pred             cCccCCCcCEEEECCchH-------HHHHHHHHhcCCCcEEEEEEc
Confidence              3445899999876542       245778999999999988764

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.34  E-value=1.8e-12  Score=114.74  Aligned_cols=105  Identities=19%  Similarity=0.102  Sum_probs=82.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC----CCCeEEEEccccccCcCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL----STRMFFHTTDIMNVSSALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl----~~ri~f~~gDa~~l~~~l~~f  194 (318)
                      ..++.+|||||||+ |..+..+++...+..+|+++|+|+.+++.|++.+.. .|.    ..+++++++|+.+.+...+.|
T Consensus        75 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~f  152 (226)
T 1i1n_A           75 LHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK-DDPTLLSSGRVQLVVGDGRMGYAEEAPY  152 (226)
T ss_dssp             SCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-HCTHHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred             CCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-hcccccCCCcEEEEECCcccCcccCCCc
Confidence            36789999999997 555567777543557999999999999999998876 554    468999999998765445589


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+|++.....       .+++++.+.|||||++++-..
T Consensus       153 D~i~~~~~~~-------~~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          153 DAIHVGAAAP-------VVPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             EEEEECSBBS-------SCCHHHHHTEEEEEEEEEEES
T ss_pred             CEEEECCchH-------HHHHHHHHhcCCCcEEEEEEe
Confidence            9999776431       245678899999999988653

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.34  E-value=2.9e-12  Score=119.24  Aligned_cols=110  Identities=12%  Similarity=0.163  Sum_probs=85.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC--C-CCCeEEEEccccccC-cCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD--L-STRMFFHTTDIMNVS-SALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g--l-~~ri~f~~gDa~~l~-~~l~~fD  195 (318)
                      ..+++||+||||. |..+..+++ +.++.+|++||+|+++++.|++.+.. .+  + ..+++++.+|+.+.. ...+.||
T Consensus        77 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~a~~~~~~-~~~~~~~~~v~~~~~D~~~~l~~~~~~fD  153 (283)
T 2i7c_A           77 KEPKNVLVVGGGD-GGIIRELCK-YKSVENIDICEIDETVIEVSKIYFKN-ISCGYEDKRVNVFIEDASKFLENVTNTYD  153 (283)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCTT-TSGGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred             CCCCeEEEEeCCc-CHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHhHH-hccccCCCcEEEEECChHHHHHhCCCCce
Confidence            5789999999996 566667775 44678999999999999999998865 32  2 478999999998742 2235899


Q ss_pred             EEEeccccCCChhHH---HHHHHHHHHhccCCeEEEEEcC
Q 021008          196 VVFLAALVGMDKDEK---IRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       196 ~V~~aalvgm~~~~k---~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +|+++...+......   .++++.+++.|+|||++++...
T Consensus       154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            999876443222222   6899999999999999999864

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.33  E-value=3.2e-12  Score=107.87  Aligned_cols=137  Identities=15%  Similarity=0.093  Sum_probs=95.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.   +.+|+|+|+|+++++.|++.  .     .+++|+.+|   ++...+.||+|+.
T Consensus        16 ~~~~~vLDiG~G~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~--~-----~~v~~~~~d---~~~~~~~~D~v~~   81 (170)
T 3i9f_A           16 GKKGVIVDYGCGN-GFYCKYLLEF---ATKLYCIDINVIALKEVKEK--F-----DSVITLSDP---KEIPDNSVDFILF   81 (170)
T ss_dssp             SCCEEEEEETCTT-CTTHHHHHTT---EEEEEEECSCHHHHHHHHHH--C-----TTSEEESSG---GGSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCC-CHHHHHHHhh---cCeEEEEeCCHHHHHHHHHh--C-----CCcEEEeCC---CCCCCCceEEEEE
Confidence            6778999999996 5556677764   35999999999999999887  2     579999999   4445568999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCccc-c---cccCCCcc----ccCCcEEEEEEcCchhHHHHHHHHh
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARA-F---LYPVVDPS----DLLGFEVLSVFHPTDEVINSVVLAR  271 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~-~---lYP~v~~~----~l~gf~~~~~~~p~~~VvNsvv~ar  271 (318)
                      ...+. ...+..++++++.+.|||||.+++.+...... .   .+..++++    .+.||++..+.......  ..++++
T Consensus        82 ~~~l~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gf~~~~~~~~~~~~--~~l~~~  158 (170)
T 3i9f_A           82 ANSFH-DMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTPYH--FGLVLK  158 (170)
T ss_dssp             ESCST-TCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTTTEEEEEEECSSTTE--EEEEEE
T ss_pred             ccchh-cccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHhCcEEEEccCCCCce--EEEEEe
Confidence            65443 22577899999999999999999876321111 1   11112222    12399987776665422  345555


Q ss_pred             hc
Q 021008          272 KY  273 (318)
Q Consensus       272 k~  273 (318)
                      +.
T Consensus       159 ~~  160 (170)
T 3i9f_A          159 RK  160 (170)
T ss_dssp             EC
T ss_pred             cC
Confidence            54

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.33  E-value=1.7e-13  Score=122.55  Aligned_cols=105  Identities=18%  Similarity=0.146  Sum_probs=85.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.+|+.   |.+|+|+|+|+.+++.|++.++. .|+..+++|+++|+.+++ ....||+|+.
T Consensus        77 ~~~~~vLD~gcG~-G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~D~v~~  150 (241)
T 3gdh_A           77 FKCDVVVDAFCGV-GGNTIQFALT---GMRVIAIDIDPVKIALARNNAEV-YGIADKIEFICGDFLLLA-SFLKADVVFL  150 (241)
T ss_dssp             SCCSEEEETTCTT-SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH-TTCGGGEEEEESCHHHHG-GGCCCSEEEE
T ss_pred             cCCCEEEECcccc-CHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHH-cCCCcCeEEEECChHHhc-ccCCCCEEEE
Confidence            4789999999996 5666778863   79999999999999999999998 788789999999999886 3458999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....+. .......+.++++.|+|||.+++..
T Consensus       151 ~~~~~~-~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          151 SPPWGG-PDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             CCCCSS-GGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             CCCcCC-cchhhhHHHHHHhhcCCcceeHHHH
Confidence            754332 2333446778899999999987764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.33  E-value=2.5e-12  Score=120.84  Aligned_cols=112  Identities=14%  Similarity=0.125  Sum_probs=84.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCCCCCeEEEEccccccCcC--CCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDLSTRMFFHTTDIMNVSSA--LKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl~~ri~f~~gDa~~l~~~--l~~fD  195 (318)
                      ..+++||+||||. |..+..+++ +.+..+|++||+|+.+++.|++.+..  ......+++++.+|+.+.+..  .+.||
T Consensus        94 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD  171 (304)
T 3bwc_A           94 PKPERVLIIGGGD-GGVLREVLR-HGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYD  171 (304)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHHT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCcee
Confidence            6789999999995 666677775 34678999999999999999998732  012347899999999886543  45899


Q ss_pred             EEEeccccCCChhH---HHHHHHHHHHhccCCeEEEEEcCC
Q 021008          196 VVFLAALVGMDKDE---KIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       196 ~V~~aalvgm~~~~---k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      +|+++...+.....   ..++++++++.|||||++++....
T Consensus       172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES  212 (304)
T ss_dssp             EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            99987643211111   158999999999999999997643

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.33  E-value=1.1e-11  Score=117.57  Aligned_cols=105  Identities=13%  Similarity=0.250  Sum_probs=87.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~~l~~fD~V~  198 (318)
                      .++.+|||||||. |..+..+++++ ++.+++++|+ +.+++.|++.+.. .|+.++++|+.+|+.+ ++   .+||+|+
T Consensus       182 ~~~~~vLDvG~G~-G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~---~~~D~v~  254 (360)
T 1tw3_A          182 TNVRHVLDVGGGK-GGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKD-EGLSDRVDVVEGDFFEPLP---RKADAII  254 (360)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHH-TTCTTTEEEEECCTTSCCS---SCEEEEE
T ss_pred             ccCcEEEEeCCcC-cHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHh-cCCCCceEEEeCCCCCCCC---CCccEEE
Confidence            5678999999996 55667788764 8899999999 9999999999988 7888899999999976 32   2599998


Q ss_pred             ecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +...+ .++.++..++++++++.|+|||++++.+
T Consensus       255 ~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  288 (360)
T 1tw3_A          255 LSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  288 (360)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            76544 4555566799999999999999988765

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.32  E-value=6.9e-12  Score=114.86  Aligned_cols=110  Identities=16%  Similarity=0.137  Sum_probs=84.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC--CCCCCCeEEEEccccccC-------cC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD--PDLSTRMFFHTTDIMNVS-------SA  190 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~--~gl~~ri~f~~gDa~~l~-------~~  190 (318)
                      .++.+|||+|||+ |.-++.+|++. ++.+|+|||+|+++++.|++++...  .|+.++++|+++|+.+..       ..
T Consensus        35 ~~~~~VLDlG~G~-G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~  112 (260)
T 2ozv_A           35 DRACRIADLGAGA-GAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP  112 (260)
T ss_dssp             CSCEEEEECCSSS-SHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred             cCCCEEEEeCChH-hHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence            5678999999996 66667888764 7899999999999999999987641  356678999999998862       23


Q ss_pred             CCCccEEEecc-ccC----------------CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 LKDYEVVFLAA-LVG----------------MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 l~~fD~V~~aa-lvg----------------m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+.||+|+..- +..                ........+++.+.+.|||||.+++-.
T Consensus       113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            45899999751 000                011235789999999999999987744

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.32  E-value=6.4e-12  Score=118.59  Aligned_cols=110  Identities=14%  Similarity=0.216  Sum_probs=86.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||+||||++.| +.+|+.+.++++|+++|+|+.+++.+++++++ .|+. +++++++|+.+++...+.||+|+
T Consensus       116 ~~~g~~VLDlg~G~G~~t-~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~-~g~~-~v~~~~~D~~~~~~~~~~fD~Il  192 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKT-SYLAQLMRNDGVIYAFDVDENRLRETRLNLSR-LGVL-NVILFHSSSLHIGELNVEFDKIL  192 (315)
T ss_dssp             CCTTCEEEECCSSCSHHH-HHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-HTCC-SEEEESSCGGGGGGGCCCEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHH-HHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH-hCCC-eEEEEECChhhcccccccCCEEE
Confidence            367889999999987666 45776543468999999999999999999988 7774 69999999998765345899999


Q ss_pred             ecccc---CC-C--h---------------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV---GM-D--K---------------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv---gm-~--~---------------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +++-.   |+ .  .               ....++++++.+.|||||++++..
T Consensus       193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st  246 (315)
T 1ixk_A          193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  246 (315)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            86431   11 1  1               012589999999999999998854

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.32  E-value=6.9e-12  Score=113.74  Aligned_cols=99  Identities=13%  Similarity=0.123  Sum_probs=79.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++.   |.+|+|+|+|+++++.|++....        .++++|+.+++...+.||+|+.
T Consensus        53 ~~~~~vLDiGcG~-G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~d~~~~~~~~~~fD~v~~  120 (260)
T 2avn_A           53 KNPCRVLDLGGGT-GKWSLFLQER---GFEVVLVDPSKEMLEVAREKGVK--------NVVEAKAEDLPFPSGAFEAVLA  120 (260)
T ss_dssp             CSCCEEEEETCTT-CHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTCS--------CEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEeCCCc-CHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcCC--------CEEECcHHHCCCCCCCEEEEEE
Confidence            4788999999996 5555677763   78999999999999999987541        2899999998766678999987


Q ss_pred             cc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .. +.++. .+..++++++.+.|||||.+++..
T Consensus       121 ~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          121 LGDVLSYV-ENKDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             CSSHHHHC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhhcc-ccHHHHHHHHHHHcCCCeEEEEEe
Confidence            54 33321 347889999999999999998854

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.32  E-value=1.5e-11  Score=103.72  Aligned_cols=98  Identities=9%  Similarity=0.050  Sum_probs=82.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.+++   ++.+|+|+|+|+.+++.|++.+.. .|+ .+++|+++|+.+ +...+.||+|+.
T Consensus        34 ~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~-~~~-~~~~~~~~d~~~-~~~~~~~D~i~~  106 (183)
T 2yxd_A           34 NKDDVVVDVGCGS-GGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAK-FNI-KNCQIIKGRAED-VLDKLEFNKAFI  106 (183)
T ss_dssp             CTTCEEEEESCCC-SHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHH-TTC-CSEEEEESCHHH-HGGGCCCSEEEE
T ss_pred             CCCCEEEEeCCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHH-cCC-CcEEEEECCccc-cccCCCCcEEEE
Confidence            6778999999996 566677776   689999999999999999999988 676 679999999987 333368999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...     ....++++++.+.  |||.+++..
T Consensus       107 ~~~-----~~~~~~l~~~~~~--~gG~l~~~~  131 (183)
T 2yxd_A          107 GGT-----KNIEKIIEILDKK--KINHIVANT  131 (183)
T ss_dssp             CSC-----SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred             CCc-----ccHHHHHHHHhhC--CCCEEEEEe
Confidence            763     4667899999887  999998876

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.31  E-value=1.5e-11  Score=129.54  Aligned_cols=111  Identities=14%  Similarity=0.200  Sum_probs=87.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc-----CCCCCCCeEEEEccccccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS-----DPDLSTRMFFHTTDIMNVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~-----~~gl~~ri~f~~gDa~~l~~~l~~f  194 (318)
                      .++.+|||||||+ |..++.||+...+..+|+|||+|+.+++.|++.+..     ..|+ .+++|+++|+.+++...+.|
T Consensus       720 ~~g~rVLDVGCGT-G~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~~d~sF  797 (950)
T 3htx_A          720 SSASTLVDFGCGS-GSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDSRLHDV  797 (950)
T ss_dssp             SCCSEEEEETCSS-SHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCTTSCSC
T ss_pred             cCCCEEEEECCCC-CHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCcccCCe
Confidence            5789999999996 666678886432448999999999999999885542     1244 48999999999998877899


Q ss_pred             cEEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          195 EVVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       195 D~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      |+|+....+ +++.....++++++++.|||| .+++...+
T Consensus       798 DlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN  836 (950)
T 3htx_A          798 DIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN  836 (950)
T ss_dssp             CEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred             eEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence            999875433 556666778999999999999 77776543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.31  E-value=2.8e-12  Score=120.83  Aligned_cols=110  Identities=13%  Similarity=0.129  Sum_probs=83.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC-CCC-CCCeEEEEcccccc-CcCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD-PDL-STRMFFHTTDIMNV-SSALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-~gl-~~ri~f~~gDa~~l-~~~l~~fD~  196 (318)
                      ..+++||+||||. |..++.++++ .+..+|++||+|+++++.|++.+... .++ ..+++++.+|+.+. +...+.||+
T Consensus        94 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~  171 (304)
T 2o07_A           94 PNPRKVLIIGGGD-GGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV  171 (304)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred             CCCCEEEEECCCc-hHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceE
Confidence            5789999999995 6777778763 46789999999999999999987530 133 57899999999873 333358999


Q ss_pred             EEeccccCCCh---hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDK---DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~---~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |++++..+...   ....++++++.+.|+|||++++..
T Consensus       172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            99876432111   124579999999999999999976

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.31  E-value=2.5e-12  Score=121.44  Aligned_cols=110  Identities=15%  Similarity=0.192  Sum_probs=85.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC-CC-C-CCCeEEEEccccc-cCcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD-PD-L-STRMFFHTTDIMN-VSSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-~g-l-~~ri~f~~gDa~~-l~~~l~~fD  195 (318)
                      ..+++||+||||. |..+..+++ +.++.+|++||+|+++++.|++.+... .| + ..+++++.+|+.+ ++...++||
T Consensus        76 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD  153 (314)
T 1uir_A           76 PEPKRVLIVGGGE-GATLREVLK-HPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (314)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTT-STTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHh-cCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCcc
Confidence            6789999999995 666677776 346789999999999999999987530 12 2 4789999999987 333345899


Q ss_pred             EEEeccccCC---ChhH---HHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGM---DKDE---KIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm---~~~~---k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+++...+.   ....   ..++++++++.|+|||++++..
T Consensus       154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            9998865432   1111   4789999999999999999875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.31  E-value=8.1e-12  Score=121.03  Aligned_cols=108  Identities=12%  Similarity=0.115  Sum_probs=84.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC--CeEEEEccccccCcCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST--RMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~--ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      .++.+|||+|||. |.-++.+|+++ |+++|+|+|+|+.+++.|++.++. .|+.+  +++|+.+|+.+. ...+.||+|
T Consensus       221 ~~~~~VLDlGcG~-G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~-ngl~~~~~v~~~~~D~~~~-~~~~~fD~I  296 (375)
T 4dcm_A          221 NLEGEIVDLGCGN-GVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNALSG-VEPFRFNAV  296 (375)
T ss_dssp             SCCSEEEEETCTT-CHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHH-HCGGGGGGEEEEECSTTTT-CCTTCEEEE
T ss_pred             cCCCeEEEEeCcc-hHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHH-cCCCcCceEEEEechhhcc-CCCCCeeEE
Confidence            4558999999996 56667788764 899999999999999999999887 66654  688999999873 344589999


Q ss_pred             EeccccC----CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVG----MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvg----m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +..--.+    +......++++++.+.|||||.+++-.
T Consensus       297 i~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          297 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             EECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            9753221    122344579999999999999987743

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.31  E-value=6.3e-12  Score=119.32  Aligned_cols=112  Identities=12%  Similarity=0.154  Sum_probs=85.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC-CCC-CCCeEEEEcccccc-CcCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD-PDL-STRMFFHTTDIMNV-SSALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-~gl-~~ri~f~~gDa~~l-~~~l~~fD~  196 (318)
                      ..+++||+||||. |..++.+++ +.++.+|+++|+|+++++.|++.+... .++ ..+++++++|+.+. +...+.||+
T Consensus       115 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDv  192 (321)
T 2pt6_A          115 KEPKNVLVVGGGD-GGIIRELCK-YKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV  192 (321)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred             CCCCEEEEEcCCc-cHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceE
Confidence            5779999999996 566677775 446899999999999999999987651 123 47899999999873 223358999


Q ss_pred             EEeccccCCChhH---HHHHHHHHHHhccCCeEEEEEcCC
Q 021008          197 VFLAALVGMDKDE---KIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       197 V~~aalvgm~~~~---k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      |+++...+.....   ..++++++.+.|+|||++++....
T Consensus       193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          193 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            9987643221111   168999999999999999997643

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.30  E-value=1.9e-11  Score=120.93  Aligned_cols=108  Identities=9%  Similarity=0.083  Sum_probs=84.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHH-------HHHhhcCCCCC-CCeEEEEccccccC--
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKA-------LSLVSSDPDLS-TRMFFHTTDIMNVS--  188 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~A-------r~~~~~~~gl~-~ri~f~~gDa~~l~--  188 (318)
                      ..++.+|||||||. |..++.+|+.+ +..+|+|||+++++++.|       ++.++. .|+. .+++|+++|....+  
T Consensus       240 l~~g~~VLDLGCGs-G~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~-~Gl~~~nV~~i~gD~~~~~~~  316 (433)
T 1u2z_A          240 LKKGDTFMDLGSGV-GNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKL-YGMRLNNVEFSLKKSFVDNNR  316 (433)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHH-TTBCCCCEEEEESSCSTTCHH
T ss_pred             CCCCCEEEEeCCCc-CHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHH-cCCCCCceEEEEcCccccccc
Confidence            46789999999995 67777888754 446899999999999999       888887 7764 78999998765321  


Q ss_pred             --cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          189 --SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       189 --~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                        ...+.||+|++..... . ++..++++++.+.|||||++++-+
T Consensus       317 ~~~~~~~FDvIvvn~~l~-~-~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          317 VAELIPQCDVILVNNFLF-D-EDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             HHHHGGGCSEEEECCTTC-C-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccccCCCCEEEEeCccc-c-ccHHHHHHHHHHhCCCCeEEEEee
Confidence              1235899999753332 2 567788999999999999999875

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.30  E-value=1.8e-11  Score=115.94  Aligned_cols=105  Identities=14%  Similarity=0.137  Sum_probs=84.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|||||||+ |..++.+|+.  +..+|+|+|+| .+++.|++.++. .|+.++++++.+|+.+++...+.||+|+.
T Consensus        37 ~~~~~VLDiGcGt-G~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs  111 (328)
T 1g6q_1           37 FKDKIVLDVGCGT-GILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVEL-NGFSDKITLLRGKLEDVHLPFPKVDIIIS  111 (328)
T ss_dssp             HTTCEEEEETCTT-SHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHH-TTCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred             cCCCEEEEecCcc-HHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHH-cCCCCCEEEEECchhhccCCCCcccEEEE
Confidence            5778999999996 5556677763  34599999999 599999999988 88989999999999998665568999997


Q ss_pred             cccc-C-CChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALV-G-MDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalv-g-m~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ..+. . ........++..+.+.|||||.++.
T Consensus       112 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            6421 1 1234567899999999999999973

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.30  E-value=1.5e-12  Score=109.23  Aligned_cols=101  Identities=14%  Similarity=0.042  Sum_probs=78.4

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC----CCCccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA----LKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~----l~~fD~  196 (318)
                      ++.+|||+|||. |..++.++++   +..|+|+|+|+++++.|++.+.. .++  +++|+++|+.+....    ..+||+
T Consensus        41 ~~~~vLD~GcG~-G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~-~~~--~~~~~~~d~~~~~~~~~~~~~~~D~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGS-GAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRR-TGL--GARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             TCCEEEEETCSS-CHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHH-HTC--CCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeCCCc-CHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHH-cCC--ceEEEeccHHHHHHhhhccCCceEE
Confidence            788999999996 5666778763   56699999999999999999887 565  899999999873211    237999


Q ss_pred             EEeccccCCChhHHHHHHHHHH--HhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLA--KYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~--r~LkpGg~lv~r~  231 (318)
                      |+.....+   ....++++.+.  +.|+|||.+++..
T Consensus       114 i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~  147 (171)
T 1ws6_A          114 AFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             EEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred             EEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEe
Confidence            99875322   23445666666  9999999998865

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.30  E-value=2e-11  Score=107.00  Aligned_cols=106  Identities=15%  Similarity=0.078  Sum_probs=81.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+||+||||+ |..+..+++...++.+|+++|+|+++++.|++.+.. .|+ .+++|+.+|+.+.....+.||+|+
T Consensus        75 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~-~~v~~~~~d~~~~~~~~~~fD~v~  151 (215)
T 2yxe_A           75 LKPGMKVLEIGTGC-GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-LGY-DNVIVIVGDGTLGYEPLAPYDRIY  151 (215)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-HTC-TTEEEEESCGGGCCGGGCCEEEEE
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCC-CCeEEEECCcccCCCCCCCeeEEE
Confidence            36788999999996 666677887643458999999999999999999887 666 459999999965433345899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      .......       +.+++.+.|||||++++-...+
T Consensus       152 ~~~~~~~-------~~~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          152 TTAAGPK-------IPEPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             ESSBBSS-------CCHHHHHTEEEEEEEEEEESSS
T ss_pred             ECCchHH-------HHHHHHHHcCCCcEEEEEECCC
Confidence            7765421       1147789999999998876543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.30  E-value=1.3e-11  Score=116.09  Aligned_cols=102  Identities=13%  Similarity=0.120  Sum_probs=81.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..++.+|+....+.+|+|+|+|+++++.|++.++. .|+.+ ++|+++|+.+.+...++||+|+
T Consensus        73 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~g~~~-v~~~~~d~~~~~~~~~~fD~Iv  149 (317)
T 1dl5_A           73 LDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-LGIEN-VIFVCGDGYYGVPEFSPYDVIF  149 (317)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-TTCCS-EEEEESCGGGCCGGGCCEEEEE
T ss_pred             CCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH-cCCCC-eEEEECChhhccccCCCeEEEE
Confidence            36789999999997 566677887642257899999999999999999987 77754 9999999998654456899999


Q ss_pred             eccccC-CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVG-MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvg-m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...... +.        +.+.+.|||||++++..
T Consensus       150 ~~~~~~~~~--------~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          150 VTVGVDEVP--------ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             ECSBBSCCC--------HHHHHHEEEEEEEEEEB
T ss_pred             EcCCHHHHH--------HHHHHhcCCCcEEEEEE
Confidence            776542 22        46788999999998865

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.30  E-value=1.8e-11  Score=114.53  Aligned_cols=109  Identities=16%  Similarity=0.198  Sum_probs=80.2

Q ss_pred             CCCCEEEEEccCC--ChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc----C--C
Q 021008          120 RFPTKIAFIGSGP--LPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS----A--L  191 (318)
Q Consensus       120 ~~~~rVL~IGsGp--lp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~----~--l  191 (318)
                      ...++|||||||.  .+.+. .+|++..|+++|++||.||.+++.||+++.. .+ ..+++|+++|+.++..    .  .
T Consensus        77 ~g~~q~LDLGcG~pT~~~~~-~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~-~~-~~~~~~v~aD~~~~~~~l~~~~~~  153 (277)
T 3giw_A           77 AGIRQFLDIGTGIPTSPNLH-EIAQSVAPESRVVYVDNDPIVLTLSQGLLAS-TP-EGRTAYVEADMLDPASILDAPELR  153 (277)
T ss_dssp             SCCCEEEEESCCSCCSSCHH-HHHHHHCTTCEEEEEECCHHHHHTTHHHHCC-CS-SSEEEEEECCTTCHHHHHTCHHHH
T ss_pred             cCCCEEEEeCCCCCcccHHH-HHHHHHCCCCEEEEEeCChHHHHHHHHHhcc-CC-CCcEEEEEecccChhhhhcccccc
Confidence            3558999999994  24443 3454446899999999999999999998876 32 3689999999988521    0  1


Q ss_pred             CCcc------EEEeccccCCChhH-HHHHHHHHHHhccCCeEEEEEc
Q 021008          192 KDYE------VVFLAALVGMDKDE-KIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD------~V~~aalvgm~~~~-k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.||      +++.+.|.+++..+ ..++++.+++.|+|||.|++..
T Consensus       154 ~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~  200 (277)
T 3giw_A          154 DTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI  200 (277)
T ss_dssp             TTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred             cccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence            2344      44444444555444 4789999999999999999875

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.30  E-value=4e-12  Score=116.99  Aligned_cols=109  Identities=16%  Similarity=0.145  Sum_probs=79.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC----------------CCC---------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP----------------DLS---------  174 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~----------------gl~---------  174 (318)
                      .++.+|||||||++. +++.+++.  ++.+|+|+|+|+++++.|++.++...                |..         
T Consensus        70 ~~~~~vLDiGcG~G~-~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  146 (289)
T 2g72_A           70 VSGRTLIDIGSGPTV-YQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ  146 (289)
T ss_dssp             SCCSEEEEETCTTCC-GGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CCCCeEEEECCCcCh-HHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHH
Confidence            477899999999755 55555542  47899999999999999998665311                100         


Q ss_pred             ---CCeEEEEccccc-cCcC-----CCCccEEEecccc-CCC--hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          175 ---TRMFFHTTDIMN-VSSA-----LKDYEVVFLAALV-GMD--KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       175 ---~ri~f~~gDa~~-l~~~-----l~~fD~V~~aalv-gm~--~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                         ..++++.+|+.+ ++..     .++||+|+....+ ++.  .++..+++++++++|||||.|++..
T Consensus       147 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          147 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence               126788889987 5532     2359999865433 211  4578999999999999999998864

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.29  E-value=2.2e-11  Score=116.27  Aligned_cols=105  Identities=15%  Similarity=0.183  Sum_probs=83.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|||||||. |.-++.+|+.  +..+|+|+|+|+ +++.|++.++. .|+.++++++.+|+.+++.. ++||+|+.
T Consensus        49 ~~~~~VLDiGcGt-G~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~-~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs  122 (348)
T 2y1w_A           49 FKDKIVLDVGCGS-GILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKS-NNLTDRIVVIPGKVEEVSLP-EQVDIIIS  122 (348)
T ss_dssp             TTTCEEEEETCTT-SHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHH-TTCTTTEEEEESCTTTCCCS-SCEEEEEE
T ss_pred             CCcCEEEEcCCCc-cHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHH-cCCCCcEEEEEcchhhCCCC-CceeEEEE
Confidence            5789999999996 4555677763  456999999997 88999999988 88889999999999987533 47999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      ..+. ++..+...+.+.++.+.|||||.+++.
T Consensus       123 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          123 EPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             eCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            6432 223355677888999999999999854

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.29  E-value=8.8e-12  Score=115.01  Aligned_cols=109  Identities=14%  Similarity=0.059  Sum_probs=86.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC----CCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA----LKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~----l~~  193 (318)
                      ..++.+|||+|||+++.|. .+|+.+ ++ .+|+++|+|+.+++.++++++. .|+. +++++++|+.+++..    .+.
T Consensus        81 ~~~g~~VLDlgaG~G~~t~-~la~~~-~~~~~v~avD~~~~~l~~~~~~~~~-~g~~-~v~~~~~D~~~~~~~~~~~~~~  156 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTT-HLAQLM-KNKGTIVAVEISKTRTKALKSNINR-MGVL-NTIIINADMRKYKDYLLKNEIF  156 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHH-HHHHHT-TTCSEEEEEESCHHHHHHHHHHHHH-TTCC-SEEEEESCHHHHHHHHHHTTCC
T ss_pred             CCCcCEEEEeCCCccHHHH-HHHHHc-CCCCEEEEECCCHHHHHHHHHHHHH-hCCC-cEEEEeCChHhcchhhhhcccc
Confidence            3678899999999877765 566643 55 8999999999999999999998 7774 899999999887542    458


Q ss_pred             ccEEEecccc---CC-C-------------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALV---GM-D-------------KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalv---gm-~-------------~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||+|++++-.   |+ .             .....++++++.+.|||||++++..
T Consensus       157 fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             EEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            9999987422   11 0             0234789999999999999999865

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.29  E-value=2.4e-11  Score=115.72  Aligned_cols=111  Identities=14%  Similarity=0.065  Sum_probs=89.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||+|||++ .-++.+|....++.+|+|+|+|+.+++.|+++++. .|+. +++|+++|+.+++.....||+|++
T Consensus       202 ~~~~~vLD~gcGsG-~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~-~g~~-~i~~~~~D~~~~~~~~~~~D~Ii~  278 (354)
T 3tma_A          202 RPGMRVLDPFTGSG-TIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA-SGLS-WIRFLRADARHLPRFFPEVDRILA  278 (354)
T ss_dssp             CTTCCEEESSCTTS-HHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHH-TTCT-TCEEEECCGGGGGGTCCCCSEEEE
T ss_pred             CCCCEEEeCCCCcC-HHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHH-cCCC-ceEEEeCChhhCccccCCCCEEEE
Confidence            67789999999974 55566776433679999999999999999999998 8887 999999999998776678999998


Q ss_pred             ccccCCC-------hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          200 AALVGMD-------KDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       200 aalvgm~-------~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      .--.|..       ...+.++++++.+.|+|||.+++-..+
T Consensus       279 npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          279 NPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             CCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             CCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            5322211       123478999999999999999887754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.29  E-value=1.3e-11  Score=110.82  Aligned_cols=107  Identities=12%  Similarity=0.103  Sum_probs=81.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCC-------------------------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDL-------------------------  173 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl-------------------------  173 (318)
                      .++.+|||||||++ ..++.+++.   +. +|+|+|+|+.+++.|++.... .+.                         
T Consensus        55 ~~~~~vLDlGcG~G-~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (265)
T 2i62_A           55 VKGELLIDIGSGPT-IYQLLSACE---SFTEIIVSDYTDQNLWELQKWLKK-EPGAFDWSPVVTYVCDLEGNRMKGPEKE  129 (265)
T ss_dssp             CCEEEEEEESCTTC-CGGGTTGGG---TEEEEEEEESCHHHHHHHHHHHTT-CTTCCCCHHHHHHHHHHTTTCSCHHHHH
T ss_pred             cCCCEEEEECCCcc-HHHHHHhhc---ccCeEEEecCCHHHHHHHHHHHhc-CCccccchhhhhhhhcccccccchHHHH
Confidence            56789999999975 444566653   55 999999999999999998875 221                         


Q ss_pred             ---CCCe-EEEEccccccCc-CC---CCccEEEeccccC-C--ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          174 ---STRM-FFHTTDIMNVSS-AL---KDYEVVFLAALVG-M--DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       174 ---~~ri-~f~~gDa~~l~~-~l---~~fD~V~~aalvg-m--~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                         ..++ +|+.+|+.+.+. ..   +.||+|+....+. +  +.++..+++++++++|||||.|++..
T Consensus       130 ~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          130 EKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence               1138 999999988643 33   5899998654331 1  24578899999999999999999876

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.29  E-value=1.4e-11  Score=112.37  Aligned_cols=115  Identities=15%  Similarity=0.185  Sum_probs=88.0

Q ss_pred             HHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc
Q 021008          104 IKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD  183 (318)
Q Consensus       104 ~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD  183 (318)
                      ....+.-...+.+. ..++.+|||||||+ |..++.+++.   |++|+|+|+|+.+++.|+++++. .++.  ++|+++|
T Consensus       104 ~~tt~~~~~~l~~~-~~~~~~VLDiGcG~-G~l~~~la~~---g~~v~gvDi~~~~v~~a~~n~~~-~~~~--v~~~~~d  175 (254)
T 2nxc_A          104 HETTRLALKALARH-LRPGDKVLDLGTGS-GVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKR-NGVR--PRFLEGS  175 (254)
T ss_dssp             SHHHHHHHHHHHHH-CCTTCEEEEETCTT-SHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHH-TTCC--CEEEESC
T ss_pred             CHHHHHHHHHHHHh-cCCCCEEEEecCCC-cHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHH-cCCc--EEEEECC
Confidence            33344444444333 36789999999997 6666777763   56999999999999999999887 6664  9999999


Q ss_pred             ccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          184 IMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       184 a~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.+. ...++||+|+...+    .....+++.++.+.|+|||.+++..
T Consensus       176 ~~~~-~~~~~fD~Vv~n~~----~~~~~~~l~~~~~~LkpgG~lils~  218 (254)
T 2nxc_A          176 LEAA-LPFGPFDLLVANLY----AELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             HHHH-GGGCCEEEEEEECC----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhc-CcCCCCCEEEECCc----HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            9873 22348999996542    3456789999999999999998854

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.29  E-value=2.6e-11  Score=112.41  Aligned_cols=102  Identities=10%  Similarity=0.119  Sum_probs=78.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc----C-CCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS----A-LKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~----~-l~~  193 (318)
                      ..++.+|||||||+ |..++.+|+   .|++|+|||+|+.+++.|++.+.. .       ++.+|..+++.    . .+.
T Consensus        43 l~~g~~VLDlGcGt-G~~a~~La~---~g~~V~gvD~S~~ml~~Ar~~~~~-~-------~v~~~~~~~~~~~~~~~~~~  110 (261)
T 3iv6_A           43 IVPGSTVAVIGAST-RFLIEKALE---RGASVTVFDFSQRMCDDLAEALAD-R-------CVTIDLLDITAEIPKELAGH  110 (261)
T ss_dssp             CCTTCEEEEECTTC-HHHHHHHHH---TTCEEEEEESCHHHHHHHHHHTSS-S-------CCEEEECCTTSCCCGGGTTC
T ss_pred             CCCcCEEEEEeCcc-hHHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHh-c-------cceeeeeecccccccccCCC
Confidence            36789999999996 777788887   388999999999999999998876 2       23344443322    1 248


Q ss_pred             ccEEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          194 YEVVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       194 fD~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ||+|+....+ ++..++..++++++.+.| |||++++....
T Consensus       111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            9999976644 456678888999999999 99999886533

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.28  E-value=8.8e-12  Score=116.78  Aligned_cols=112  Identities=10%  Similarity=0.035  Sum_probs=83.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC-CCC-CCCeEEEEcccccc-CcCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD-PDL-STRMFFHTTDIMNV-SSALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-~gl-~~ri~f~~gDa~~l-~~~l~~fD~  196 (318)
                      ..+++||+||||+ |..++.+++ +.+..+|++||+|+.+++.|++.+... .++ ..+++++.+|+.+. +...+.||+
T Consensus        89 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~  166 (296)
T 1inl_A           89 PNPKKVLIIGGGD-GGTLREVLK-HDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV  166 (296)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTT-STTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHh-cCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceE
Confidence            5679999999996 566667775 346789999999999999999987530 123 47899999999873 333358999


Q ss_pred             EEeccccC-CCh---hHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          197 VFLAALVG-MDK---DEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       197 V~~aalvg-m~~---~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      |+++...+ ...   ....++++++++.|+|||++++....
T Consensus       167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          167 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            99876321 100   02368999999999999999997643

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.28  E-value=1.6e-11  Score=119.25  Aligned_cols=105  Identities=12%  Similarity=0.094  Sum_probs=85.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||+|||. |..++.++++   +++|+++|+|+.+++.|++++.. .++  +++|+++|+.+.+...+.||+|+.
T Consensus       232 ~~~~~VLDlGcG~-G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~-~~~--~v~~~~~D~~~~~~~~~~fD~Ii~  304 (381)
T 3dmg_A          232 VRGRQVLDLGAGY-GALTLPLARM---GAEVVGVEDDLASVLSLQKGLEA-NAL--KAQALHSDVDEALTEEARFDIIVT  304 (381)
T ss_dssp             TTTCEEEEETCTT-STTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHH-TTC--CCEEEECSTTTTSCTTCCEEEEEE
T ss_pred             CCCCEEEEEeeeC-CHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHH-cCC--CeEEEEcchhhccccCCCeEEEEE
Confidence            3678999999996 5556778873   78999999999999999999987 554  389999999998765568999997


Q ss_pred             ccccC----CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVG----MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvg----m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....+    .......++++++.+.|+|||.+++-.
T Consensus       305 npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          305 NPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             CCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            53222    124677899999999999999998854

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.28  E-value=7e-12  Score=118.38  Aligned_cols=106  Identities=12%  Similarity=0.064  Sum_probs=81.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC----------CCCCeEEEEccccccC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD----------LSTRMFFHTTDIMNVS  188 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g----------l~~ri~f~~gDa~~l~  188 (318)
                      ..++.+|||||||+ |..++.+|+...+..+|+++|+|+++++.|+++++. .|          +..+++|+.+|+.+..
T Consensus       103 ~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~ln~~~~~~~~v~~~~~d~~~~~  180 (336)
T 2b25_A          103 INPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH-WRDSWKLSHVEEWPDNVDFIHKDISGAT  180 (336)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHH-HHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred             CCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH-hhcccccccccccCCceEEEECChHHcc
Confidence            46889999999997 555667887544668999999999999999998874 22          3478999999998863


Q ss_pred             c--CCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          189 S--ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       189 ~--~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .  ..+.||+|+++..      ....+++++.+.|+|||.+++-..
T Consensus       181 ~~~~~~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          181 EDIKSLTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             -------EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred             cccCCCCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence            2  3347999998642      223388999999999999998664

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.28  E-value=5.8e-11  Score=113.53  Aligned_cols=105  Identities=13%  Similarity=0.168  Sum_probs=87.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ....+|+|||||. |..++.+++++ |+.+++.+|. |++++.|++..+. .+ .+||+|+.+|..+.+  ..++|+|++
T Consensus       178 ~~~~~v~DvGgG~-G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~-~~-~~rv~~~~gD~~~~~--~~~~D~~~~  250 (353)
T 4a6d_A          178 SVFPLMCDLGGGA-GALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSF-QE-EEQIDFQEGDFFKDP--LPEADLYIL  250 (353)
T ss_dssp             GGCSEEEEETCTT-SHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC----CCSEEEEESCTTTSC--CCCCSEEEE
T ss_pred             ccCCeEEeeCCCC-CHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhh-cc-cCceeeecCccccCC--CCCceEEEe
Confidence            5668999999995 66677888876 9999999998 8899999998875 44 689999999998643  347899998


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.++..++|+++++.|+|||+|++.+
T Consensus       251 ~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e  283 (353)
T 4a6d_A          251 ARVLHDWADGKCSHLLERIYHTCKPGGGILVIE  283 (353)
T ss_dssp             ESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             eeecccCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence            7644 5677777899999999999999998866

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.28  E-value=2.9e-11  Score=111.00  Aligned_cols=107  Identities=16%  Similarity=0.240  Sum_probs=84.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.+|+.+ ++++|+++|+|+.+++.|++++.. .|+. +++|+++|+.+.. ..+.||+|+.
T Consensus       108 ~~~~~vLDlG~Gs-G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~-~~~~-~v~~~~~d~~~~~-~~~~fD~Iv~  182 (276)
T 2b3t_A          108 EQPCRILDLGTGT-GAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQH-LAIK-NIHILQSDWFSAL-AGQQFAMIVS  182 (276)
T ss_dssp             SSCCEEEEETCTT-SHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHH-HTCC-SEEEECCSTTGGG-TTCCEEEEEE
T ss_pred             cCCCEEEEecCCc-cHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH-cCCC-ceEEEEcchhhhc-ccCCccEEEE
Confidence            4678999999996 55567788654 899999999999999999999987 6764 7999999998742 2358999997


Q ss_pred             cc-ccCC-------------C----------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AA-LVGM-------------D----------KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aa-lvgm-------------~----------~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .. +++.             +          .....++++++.+.|+|||.+++..
T Consensus       183 npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          183 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            52 1110             0          1356789999999999999999864

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.27  E-value=1.7e-11  Score=116.35  Aligned_cols=103  Identities=13%  Similarity=0.167  Sum_probs=81.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++++ |+.+++++|+ +.++.  ++..+. .++.++++|+.+|..+ +..  +||+|++
T Consensus       183 ~~~~~vLDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~-~~~~~~v~~~~~d~~~-~~p--~~D~v~~  253 (348)
T 3lst_A          183 PATGTVADVGGGR-GGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDA-PDVAGRWKVVEGDFLR-EVP--HADVHVL  253 (348)
T ss_dssp             CSSEEEEEETCTT-SHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCC-GGGTTSEEEEECCTTT-CCC--CCSEEEE
T ss_pred             cCCceEEEECCcc-CHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccc-cCCCCCeEEEecCCCC-CCC--CCcEEEE
Confidence            6778999999996 66667788765 8999999999 55555  444444 5778899999999963 222  8999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.++..++++++++.|||||+|++.+
T Consensus       254 ~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          254 KRILHNWGDEDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             ehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            6544 4565666899999999999999998866

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.27  E-value=5.1e-11  Score=111.02  Aligned_cols=113  Identities=16%  Similarity=0.186  Sum_probs=84.8

Q ss_pred             CCCEEEEEccCCChH----HHHHHHHhCC--C-CcEEEEEeCChHHHHHHHHHhhc--------------------CC--
Q 021008          121 FPTKIAFIGSGPLPL----TSIVLAINHL--T-TTCFDNYDIDPSANSKALSLVSS--------------------DP--  171 (318)
Q Consensus       121 ~~~rVL~IGsGplp~----tai~LA~~~~--~-ga~V~gvDid~~ai~~Ar~~~~~--------------------~~--  171 (318)
                      ++.||+++|||+ |-    -++.|++...  + +++|+|+|||+++++.|++.+-.                    ..  
T Consensus       105 ~~~rIld~GCgT-Gee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~  183 (274)
T 1af7_A          105 GEYRVWSAAAST-GEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  183 (274)
T ss_dssp             SCEEEEESCCTT-THHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCcEEEEeeccC-ChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCC
Confidence            457999999996 44    2455665421  1 58999999999999999986410                    00  


Q ss_pred             -------CCCCCeEEEEccccccCcC-CCCccEEEeccc-cCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          172 -------DLSTRMFFHTTDIMNVSSA-LKDYEVVFLAAL-VGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       172 -------gl~~ri~f~~gDa~~l~~~-l~~fD~V~~aal-vgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                             ++.++|+|.++|+.+.+.. .+.||+|+.... ..++.+.+.++++.+++.|+|||.|++..+..
T Consensus       184 ~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE~  255 (274)
T 1af7_A          184 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSEN  255 (274)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCC
T ss_pred             CceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEeccc
Confidence                   0124799999999986543 358999997553 35577888999999999999999999966544

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.26  E-value=2.1e-11  Score=113.56  Aligned_cols=108  Identities=14%  Similarity=0.234  Sum_probs=84.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCc---cE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDY---EV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~f---D~  196 (318)
                      .++.+|||||||+ |.-++.+|+.  ++++|+|+|+|+++++.|++++.. .|+.++++|+++|+.+...  +.|   |+
T Consensus       122 ~~~~~vLDlG~Gs-G~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~-~~l~~~v~~~~~D~~~~~~--~~f~~~D~  195 (284)
T 1nv8_A          122 YGIKTVADIGTGS-GAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAER-HGVSDRFFVRKGEFLEPFK--EKFASIEM  195 (284)
T ss_dssp             HTCCEEEEESCTT-SHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHH-TTCTTSEEEEESSTTGGGG--GGTTTCCE
T ss_pred             cCCCEEEEEeCch-hHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHH-cCCCCceEEEECcchhhcc--cccCCCCE
Confidence            3668999999996 5666788875  899999999999999999999998 8888899999999987422  368   99


Q ss_pred             EEecc-ccC----C-------C------hhHHHHHHHHHH-HhccCCeEEEEEcCC
Q 021008          197 VFLAA-LVG----M-------D------KDEKIRVIDHLA-KYMAPGALLMLRSAH  233 (318)
Q Consensus       197 V~~aa-lvg----m-------~------~~~k~~vl~~l~-r~LkpGg~lv~r~~~  233 (318)
                      |+..- .++    +       +      ..+...+++++. +.++|||.+++..++
T Consensus       196 IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~  251 (284)
T 1nv8_A          196 ILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  251 (284)
T ss_dssp             EEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             EEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence            98741 000    0       0      011237899999 999999999986543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.26  E-value=3.3e-11  Score=109.89  Aligned_cols=104  Identities=11%  Similarity=0.102  Sum_probs=75.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--C-CCCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--A-LKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~-l~~fD  195 (318)
                      ..++.+|||+||||++.| ..+|+...++++|+++|+++.+++...+.++. .   .++.++++|+.....  . ...||
T Consensus        74 l~~g~~VLDlG~GtG~~t-~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-r---~nv~~i~~Da~~~~~~~~~~~~~D  148 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTI-SHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-R---PNIFPLLADARFPQSYKSVVENVD  148 (232)
T ss_dssp             CCTTCEEEEETCTTSHHH-HHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-C---TTEEEEECCTTCGGGTTTTCCCEE
T ss_pred             CCCCCEEEEEeecCCHHH-HHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-c---CCeEEEEcccccchhhhccccceE
Confidence            468899999999985544 56777655688999999999987655554444 1   579999999986431  1 24899


Q ss_pred             EEEeccccCCChhHHHHHH-HHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVI-DHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl-~~l~r~LkpGg~lv~r~  231 (318)
                      +||.+...    .+..+++ ..+.+.|||||.|++--
T Consensus       149 ~I~~d~a~----~~~~~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          149 VLYVDIAQ----PDQTDIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             EEEECCCC----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEecCCC----hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence            99987532    3444444 45556999999998763

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.26  E-value=4.8e-11  Score=105.65  Aligned_cols=99  Identities=16%  Similarity=0.096  Sum_probs=78.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |..+..+++.   +.+|+|+|+|+++++.|++.... .|   +++|+++|+.+.....++||+|+
T Consensus        68 ~~~~~~vLdiG~G~-G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~-~~---~v~~~~~d~~~~~~~~~~fD~v~  139 (231)
T 1vbf_A           68 LHKGQKVLEIGTGI-GYYTALIAEI---VDKVVSVEINEKMYNYASKLLSY-YN---NIKLILGDGTLGYEEEKPYDRVV  139 (231)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHTT-CS---SEEEEESCGGGCCGGGCCEEEEE
T ss_pred             CCCCCEEEEEcCCC-CHHHHHHHHH---cCEEEEEeCCHHHHHHHHHHHhh-cC---CeEEEECCcccccccCCCccEEE
Confidence            36788999999996 5666678764   48999999999999999999887 44   89999999987333345899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ....+..       +.+++.+.|+|||++++...
T Consensus       140 ~~~~~~~-------~~~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          140 VWATAPT-------LLCKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             ESSBBSS-------CCHHHHHTEEEEEEEEEEEC
T ss_pred             ECCcHHH-------HHHHHHHHcCCCcEEEEEEc
Confidence            7764421       12357899999999988764

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.25  E-value=3.4e-11  Score=115.98  Aligned_cols=101  Identities=13%  Similarity=0.065  Sum_probs=81.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCcC-CCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSSA-LKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~~-l~~fD~V  197 (318)
                      .++++||||| |+ |..++.+|+. .++.+|+++|+|+.+++.|+++++. .|+. +++|+.+|+.+ ++.. .++||+|
T Consensus       171 ~~~~~VLDlG-G~-G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~-~g~~-~v~~~~~D~~~~l~~~~~~~fD~V  245 (373)
T 2qm3_A          171 LENKDIFVLG-DD-DLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANE-IGYE-DIEIFTFDLRKPLPDYALHKFDTF  245 (373)
T ss_dssp             STTCEEEEES-CT-TCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHH-HTCC-CEEEECCCTTSCCCTTTSSCBSEE
T ss_pred             CCCCEEEEEC-CC-CHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH-cCCC-CEEEEEChhhhhchhhccCCccEE
Confidence            4679999999 96 5566777764 3567999999999999999999988 7776 89999999998 7642 3489999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEE
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALL  227 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~l  227 (318)
                      +++...+  ...-.++++++.+.|||||++
T Consensus       246 i~~~p~~--~~~~~~~l~~~~~~LkpgG~~  273 (373)
T 2qm3_A          246 ITDPPET--LEAIRAFVGRGIATLKGPRCA  273 (373)
T ss_dssp             EECCCSS--HHHHHHHHHHHHHTBCSTTCE
T ss_pred             EECCCCc--hHHHHHHHHHHHHHcccCCeE
Confidence            9875332  123478999999999999943

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.25  E-value=8.7e-12  Score=112.58  Aligned_cols=109  Identities=17%  Similarity=0.149  Sum_probs=82.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhC-CCCcEEEEEeCChHHHHHHHHHhhcCC---CCCCC-------------------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINH-LTTTCFDNYDIDPSANSKALSLVSSDP---DLSTR-------------------  176 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~-~~ga~V~gvDid~~ai~~Ar~~~~~~~---gl~~r-------------------  176 (318)
                      .++.+|||+|||+ |..++.+++.. .++.+|+|+|+|+.+++.|++.+.. .   ++..+                   
T Consensus        50 ~~~~~vLD~gcGs-G~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (250)
T 1o9g_A           50 DGPVTLWDPCCGS-GYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLAL-LSPAGLTARELERREQSERFGKPSYLEA  127 (250)
T ss_dssp             CSCEEEEETTCTT-SHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHT-TSHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             CCCCeEEECCCCC-CHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHH-hhhccccccchhhhhhhhhcccccchhh
Confidence            3678999999996 56667777651 2678999999999999999988876 4   44333                   


Q ss_pred             ------eE-------------EEEccccccCc-----CCCCccEEEecc-ccCCC-------hhHHHHHHHHHHHhccCC
Q 021008          177 ------MF-------------FHTTDIMNVSS-----ALKDYEVVFLAA-LVGMD-------KDEKIRVIDHLAKYMAPG  224 (318)
Q Consensus       177 ------i~-------------f~~gDa~~l~~-----~l~~fD~V~~aa-lvgm~-------~~~k~~vl~~l~r~LkpG  224 (318)
                            ++             |+++|+.+...     ....||+|+..- +....       .....++++++.+.|+||
T Consensus       128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  207 (250)
T 1o9g_A          128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH  207 (250)
T ss_dssp             HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             hhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence                  77             99999987532     223899998642 11111       256779999999999999


Q ss_pred             eEEEEE
Q 021008          225 ALLMLR  230 (318)
Q Consensus       225 g~lv~r  230 (318)
                      |.+++.
T Consensus       208 G~l~~~  213 (250)
T 1o9g_A          208 AVIAVT  213 (250)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            999983

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.25  E-value=1.9e-11  Score=107.92  Aligned_cols=93  Identities=13%  Similarity=0.121  Sum_probs=75.0

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      ++.+|||||||++ ..+..+++    .   +|+|+|+++++.|++.         +++++++|+.+++...+.||+|+..
T Consensus        47 ~~~~vLDiG~G~G-~~~~~l~~----~---~~vD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~~~fD~v~~~  109 (219)
T 1vlm_A           47 PEGRGVEIGVGTG-RFAVPLKI----K---IGVEPSERMAEIARKR---------GVFVLKGTAENLPLKDESFDFALMV  109 (219)
T ss_dssp             CSSCEEEETCTTS-TTHHHHTC----C---EEEESCHHHHHHHHHT---------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred             CCCcEEEeCCCCC-HHHHHHHH----H---hccCCCHHHHHHHHhc---------CCEEEEcccccCCCCCCCeeEEEEc
Confidence            4899999999974 44556654    1   9999999999999875         5789999999887666689999976


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+. ...+..++++++.+.|+|||.+++..
T Consensus       110 ~~l~-~~~~~~~~l~~~~~~L~pgG~l~i~~  139 (219)
T 1vlm_A          110 TTIC-FVDDPERALKEAYRILKKGGYLIVGI  139 (219)
T ss_dssp             SCGG-GSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chHh-hccCHHHHHHHHHHHcCCCcEEEEEE
Confidence            5442 12466889999999999999998875

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.24  E-value=2e-11  Score=116.48  Aligned_cols=107  Identities=17%  Similarity=0.112  Sum_probs=83.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC-CeEEEEccccccCcC----CCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST-RMFFHTTDIMNVSSA----LKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~-ri~f~~gDa~~l~~~----l~~f  194 (318)
                      .++.+|||+|||++ .-++.+|+   .|++|++||+|+.+++.|+++++. .|+.+ +++|+++|+.+....    ...|
T Consensus       152 ~~~~~VLDlgcGtG-~~sl~la~---~ga~V~~VD~s~~al~~a~~n~~~-~gl~~~~v~~i~~D~~~~l~~~~~~~~~f  226 (332)
T 2igt_A          152 DRPLKVLNLFGYTG-VASLVAAA---AGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDAMKFIQREERRGSTY  226 (332)
T ss_dssp             SSCCEEEEETCTTC-HHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred             CCCCcEEEcccccC-HHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHH-cCCCccceEEEECcHHHHHHHHHhcCCCc
Confidence            46789999999975 45567776   377999999999999999999987 77766 699999999886432    3489


Q ss_pred             cEEEeccc-cCC--------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAAL-VGM--------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aal-vgm--------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+++-- .+.        ...+..++++.+.+.|+|||.+++-.
T Consensus       227 D~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~  272 (332)
T 2igt_A          227 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  272 (332)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             eEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            99987421 010        12456789999999999999976644

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.24  E-value=2.1e-11  Score=112.63  Aligned_cols=103  Identities=12%  Similarity=0.080  Sum_probs=83.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++++|||+|||++++ ++.+|++. ++++|+|+|+|+++++.|+++++. .|+ .++.|+++|+.+.+ ....||+|+
T Consensus       117 ~~~~~~VLDlgcG~G~~-s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~-n~l-~~~~~~~~d~~~~~-~~~~~D~Vi  191 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYF-TIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKL-NKL-NNVIPILADNRDVE-LKDVADRVI  191 (272)
T ss_dssp             CCTTCEEEETTCTTTTT-HHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHH-TTC-SSEEEEESCGGGCC-CTTCEEEEE
T ss_pred             cCCCCEEEEecCcCCHH-HHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHH-cCC-CCEEEEECChHHcC-ccCCceEEE
Confidence            36789999999997554 56788753 577999999999999999999987 677 46889999999883 345899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++..     ....+++..+.+.|+|||++++..
T Consensus       192 ~d~p-----~~~~~~l~~~~~~LkpgG~l~~s~  219 (272)
T 3a27_A          192 MGYV-----HKTHKFLDKTFEFLKDRGVIHYHE  219 (272)
T ss_dssp             ECCC-----SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ECCc-----ccHHHHHHHHHHHcCCCCEEEEEE
Confidence            8752     144568899999999999998755

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.23  E-value=1.2e-11  Score=111.66  Aligned_cols=107  Identities=14%  Similarity=0.045  Sum_probs=75.1

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc-C--cC---CCCc
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV-S--SA---LKDY  194 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l-~--~~---l~~f  194 (318)
                      ++.+|||||||++.++ +.+|++. ++++|+|+|+|+++++.|++.++. .|+.++++|+++|+.+. .  ..   .+.|
T Consensus        65 ~~~~vLDlG~G~G~~~-~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (254)
T 2h00_A           65 TLRRGIDIGTGASCIY-PLLGATL-NGWYFLATEVDDMCFNYAKKNVEQ-NNLSDLIKVVKVPQKTLLMDALKEESEIIY  141 (254)
T ss_dssp             CCCEEEEESCTTTTHH-HHHHHHH-HCCEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             CCCEEEEeCCChhHHH-HHHHHhC-CCCeEEEEECCHHHHHHHHHHHHH-cCCCccEEEEEcchhhhhhhhhhcccCCcc
Confidence            5789999999975554 5566653 689999999999999999999988 78888999999998762 1  22   1479


Q ss_pred             cEEEecc-ccCCC-------------hhHHHHHHHHHHHhccCCeEEEEE
Q 021008          195 EVVFLAA-LVGMD-------------KDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       195 D~V~~aa-lvgm~-------------~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      |+|+..- +....             .+++..++..++++|||||.+.+-
T Consensus       142 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             SEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             cEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            9998752 11111             023446778889999999977553

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.23  E-value=8.2e-12  Score=115.41  Aligned_cols=99  Identities=12%  Similarity=0.058  Sum_probs=79.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC--CC-CCCeEEEEccccccCcCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP--DL-STRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~--gl-~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      ..++|||+||||. |.++..+++ + + .+|+++|+|+++++.|++.+.. .  ++ ..|++++.+|+.+..   ++||+
T Consensus        71 ~~~~~VL~iG~G~-G~~~~~ll~-~-~-~~v~~veid~~~i~~ar~~~~~-~~~~~~~~rv~~~~~D~~~~~---~~fD~  142 (262)
T 2cmg_A           71 KELKEVLIVDGFD-LELAHQLFK-Y-D-THIDFVQADEKILDSFISFFPH-FHEVKNNKNFTHAKQLLDLDI---KKYDL  142 (262)
T ss_dssp             SCCCEEEEESSCC-HHHHHHHTT-S-S-CEEEEECSCHHHHGGGTTTSTT-HHHHHTCTTEEEESSGGGSCC---CCEEE
T ss_pred             CCCCEEEEEeCCc-CHHHHHHHh-C-C-CEEEEEECCHHHHHHHHHHHHh-hccccCCCeEEEEechHHHHH---hhCCE
Confidence            5779999999995 677676775 4 5 8999999999999999987643 1  12 468999999998864   68999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |++++.   +   ...+++.+.+.|+|||++++...
T Consensus       143 Ii~d~~---d---p~~~~~~~~~~L~pgG~lv~~~~  172 (262)
T 2cmg_A          143 IFCLQE---P---DIHRIDGLKRMLKEDGVFISVAK  172 (262)
T ss_dssp             EEESSC---C---CHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EEECCC---C---hHHHHHHHHHhcCCCcEEEEEcC
Confidence            998852   1   23499999999999999999653

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.21  E-value=5.2e-11  Score=118.99  Aligned_cols=104  Identities=15%  Similarity=0.185  Sum_probs=83.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|||||||. |.-++.+|+.  +..+|+|+|+|+ +++.|++.++. .|+.++++|+.+|+.+++.. ++||+|+.
T Consensus       157 ~~~~~VLDiGcGt-G~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~-~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs  230 (480)
T 3b3j_A          157 FKDKIVLDVGCGS-GILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKS-NNLTDRIVVIPGKVEEVSLP-EQVDIIIS  230 (480)
T ss_dssp             TTTCEEEEESCST-THHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHH-TTCTTTEEEEESCTTTCCCS-SCEEEEEC
T ss_pred             cCCCEEEEecCcc-cHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHH-cCCCCcEEEEECchhhCccC-CCeEEEEE
Confidence            5678999999996 5556677762  567999999999 99999999998 88989999999999986432 47999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ..+. .+..+...+.+.++.+.|||||.+++
T Consensus       231 ~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          231 EPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             CCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             eCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            5431 11235567788899999999999985

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.20  E-value=4.1e-11  Score=104.66  Aligned_cols=97  Identities=13%  Similarity=0.180  Sum_probs=76.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc--cCcCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN--VSSALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~--l~~~l~~fD~V  197 (318)
                      .++.+|||||||+ |..+..+++.   +.+|+|+|+|+.+++.|++..         .+++++|+.+  .+...+.||+|
T Consensus        31 ~~~~~vLdiG~G~-G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~fD~v   97 (230)
T 3cc8_A           31 KEWKEVLDIGCSS-GALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL---------DHVVLGDIETMDMPYEEEQFDCV   97 (230)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS---------SEEEESCTTTCCCCSCTTCEEEE
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC---------CcEEEcchhhcCCCCCCCccCEE
Confidence            5789999999996 5555677763   699999999999999998643         2688999986  44444689999


Q ss_pred             Eecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +....+ ++  .+..++++++.+.|+|||.+++..
T Consensus        98 ~~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A           98 IFGDVLEHL--FDPWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             EEESCGGGS--SCHHHHHHHTGGGEEEEEEEEEEE
T ss_pred             EECChhhhc--CCHHHHHHHHHHHcCCCCEEEEEe
Confidence            976543 33  355789999999999999998865

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.20  E-value=3.1e-11  Score=114.81  Aligned_cols=105  Identities=10%  Similarity=0.144  Sum_probs=84.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||. |.-++.+++. .++++|+++|+|+.+++.|++.+.. .++.  ++++.+|+.+.+  .++||+|+.
T Consensus       195 ~~~~~VLDlGcG~-G~~~~~la~~-~~~~~v~~vD~s~~~l~~a~~~~~~-~~~~--~~~~~~d~~~~~--~~~fD~Iv~  267 (343)
T 2pjd_A          195 HTKGKVLDVGCGA-GVLSVAFARH-SPKIRLTLCDVSAPAVEASRATLAA-NGVE--GEVFASNVFSEV--KGRFDMIIS  267 (343)
T ss_dssp             TCCSBCCBTTCTT-SHHHHHHHHH-CTTCBCEEEESBHHHHHHHHHHHHH-TTCC--CEEEECSTTTTC--CSCEEEEEE
T ss_pred             CCCCeEEEecCcc-CHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHH-hCCC--CEEEEccccccc--cCCeeEEEE
Confidence            4678999999996 5666778876 3778999999999999999999987 5553  678999998753  458999997


Q ss_pred             ccccCC----ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGM----DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm----~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....+.    +.....++++++++.|||||.+++-.
T Consensus       268 ~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  303 (343)
T 2pjd_A          268 NPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (343)
T ss_dssp             CCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            643321    24567899999999999999988765

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.18  E-value=1.5e-10  Score=103.54  Aligned_cols=102  Identities=13%  Similarity=0.097  Sum_probs=78.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V  197 (318)
                      ..++.+||+||||. |..++.+++.. + .+|+++|+|+++++.|++.+.. .|+. +++|+.+|+.. +... ..||+|
T Consensus        89 ~~~~~~vLdiG~G~-G~~~~~la~~~-~-~~v~~vD~~~~~~~~a~~~~~~-~~~~-~v~~~~~d~~~-~~~~~~~fD~I  162 (235)
T 1jg1_A           89 LKPGMNILEVGTGS-GWNAALISEIV-K-TDVYTIERIPELVEFAKRNLER-AGVK-NVHVILGDGSK-GFPPKAPYDVI  162 (235)
T ss_dssp             CCTTCCEEEECCTT-SHHHHHHHHHH-C-SCEEEEESCHHHHHHHHHHHHH-TTCC-SEEEEESCGGG-CCGGGCCEEEE
T ss_pred             CCCCCEEEEEeCCc-CHHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHHHH-cCCC-CcEEEECCccc-CCCCCCCccEE
Confidence            36788999999995 66677788753 3 8999999999999999999987 7774 49999999832 2222 359999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ++......       +.+++.+.|+|||++++-...
T Consensus       163 i~~~~~~~-------~~~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          163 IVTAGAPK-------IPEPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             EECSBBSS-------CCHHHHHTEEEEEEEEEEECS
T ss_pred             EECCcHHH-------HHHHHHHhcCCCcEEEEEEec
Confidence            97764421       123678999999999887654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.17  E-value=2.1e-10  Score=106.05  Aligned_cols=105  Identities=18%  Similarity=0.172  Sum_probs=77.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeC-ChHHHHHHHHHh-----hcCCCCC----CCeEEEEccccccC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDI-DPSANSKALSLV-----SSDPDLS----TRMFFHTTDIMNVS  188 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDi-d~~ai~~Ar~~~-----~~~~gl~----~ri~f~~gDa~~l~  188 (318)
                      .++++|||||||. |..++.+|+.   |+ +|+++|+ |+++++.|++++     +. .|+.    .+++++..|..+..
T Consensus        78 ~~~~~vLDlG~G~-G~~~~~~a~~---~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~-~~~~~~~~~~v~~~~~~~~~~~  152 (281)
T 3bzb_A           78 IAGKTVCELGAGA-GLVSIVAFLA---GADQVVATDYPDPEILNSLESNIREHTANS-CSSETVKRASPKVVPYRWGDSP  152 (281)
T ss_dssp             TTTCEEEETTCTT-SHHHHHHHHT---TCSEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEEECCTTSCT
T ss_pred             cCCCeEEEecccc-cHHHHHHHHc---CCCEEEEEeCCCHHHHHHHHHHHHHhhhhh-cccccCCCCCeEEEEecCCCcc
Confidence            5778999999995 6777788863   55 9999999 899999999998     55 5554    58999876654321


Q ss_pred             c------CCCCccEEEeccccCCChhHHHHHHHHHHHhcc---C--CeEEEEE
Q 021008          189 S------ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMA---P--GALLMLR  230 (318)
Q Consensus       189 ~------~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~Lk---p--Gg~lv~r  230 (318)
                      .      ..+.||+|+.+..+. ..+....+++.+.+.|+   |  ||++++-
T Consensus       153 ~~~~~~~~~~~fD~Ii~~dvl~-~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          153 DSLQRCTGLQRFQVVLLADLLS-FHQAHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             HHHHHHHSCSSBSEEEEESCCS-CGGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             HHHHhhccCCCCCEEEEeCccc-ChHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence            1      235899998754332 45678899999999999   9  9986653

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.17  E-value=8.3e-11  Score=109.99  Aligned_cols=113  Identities=11%  Similarity=0.044  Sum_probs=88.1

Q ss_pred             HHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc
Q 021008          108 QLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV  187 (318)
Q Consensus       108 ~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l  187 (318)
                      ..|..++... ..++++|||+|||.++++ +.+|++  ..++|+++|+||.+++.++++++. -|+.++++++++|+.++
T Consensus       113 ~~er~ri~~~-~~~g~~VlD~~aG~G~~~-i~~a~~--g~~~V~avD~np~a~~~~~~N~~~-N~v~~~v~~~~~D~~~~  187 (278)
T 3k6r_A          113 VKERVRMAKV-AKPDELVVDMFAGIGHLS-LPIAVY--GKAKVIAIEKDPYTFKFLVENIHL-NKVEDRMSAYNMDNRDF  187 (278)
T ss_dssp             HHHHHHHHHH-CCTTCEEEETTCTTTTTT-HHHHHH--TCCEEEEECCCHHHHHHHHHHHHH-TTCTTTEEEECSCTTTC
T ss_pred             HHHHHHHHHh-cCCCCEEEEecCcCcHHH-HHHHHh--cCCeEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEeCcHHHh
Confidence            3444444332 378999999999976666 567764  357999999999999999999998 89999999999999997


Q ss_pred             CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          188 SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 ~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +. .+.||.|++.-.     ....+++....+.++|||.+.+..
T Consensus       188 ~~-~~~~D~Vi~~~p-----~~~~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          188 PG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             CC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cc-ccCCCEEEECCC-----CcHHHHHHHHHHHcCCCCEEEEEe
Confidence            64 358999886642     122457788889999999986643

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.17  E-value=1.7e-10  Score=110.83  Aligned_cols=98  Identities=10%  Similarity=0.179  Sum_probs=79.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .+..+|||||||+ |..++.+++++ |+.+++++|+ |++++.|++        ..+++|+.+|..+ +... . |+|++
T Consensus       202 ~~~~~vlDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~p~-~-D~v~~  267 (368)
T 3reo_A          202 EGLTTIVDVGGGT-GAVASMIVAKY-PSINAINFDL-PHVIQDAPA--------FSGVEHLGGDMFD-GVPK-G-DAIFI  267 (368)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC--------CTTEEEEECCTTT-CCCC-C-SEEEE
T ss_pred             cCCCEEEEeCCCc-CHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhh--------cCCCEEEecCCCC-CCCC-C-CEEEE
Confidence            4568999999996 66677888775 9999999999 888876642        1689999999986 3332 3 99987


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.++..++|+++++.|||||+|++.+
T Consensus       268 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          268 KWICHDWSDEHCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             ESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             echhhcCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            6654 4566777899999999999999998876

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.16  E-value=3.9e-11  Score=106.60  Aligned_cols=106  Identities=13%  Similarity=0.108  Sum_probs=80.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCC-----CcEEEEEeCChHHHHHHHHHhhcCCCC----CCCeEEEEccccccCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLT-----TTCFDNYDIDPSANSKALSLVSSDPDL----STRMFFHTTDIMNVSS  189 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~-----ga~V~gvDid~~ai~~Ar~~~~~~~gl----~~ri~f~~gDa~~l~~  189 (318)
                      ..++.+|||||||+ |..+..+|+....     ..+|+++|+++++++.|++.+.. .|.    ..+++|+++|+.+...
T Consensus        82 ~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~  159 (227)
T 1r18_A           82 LKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNT-DDRSMLDSGQLLIVEGDGRKGYP  159 (227)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHH-HHHHHHHHTSEEEEESCGGGCCG
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHh-cCccccCCCceEEEECCcccCCC
Confidence            36778999999997 6666677774311     25999999999999999998876 441    3689999999987322


Q ss_pred             CCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          190 ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       190 ~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      +.+.||+|++.+...       .+.+++.+.|||||++++-...
T Consensus       160 ~~~~fD~I~~~~~~~-------~~~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          160 PNAPYNAIHVGAAAP-------DTPTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             GGCSEEEEEECSCBS-------SCCHHHHHTEEEEEEEEEEESC
T ss_pred             cCCCccEEEECCchH-------HHHHHHHHHhcCCCEEEEEEec
Confidence            235899999876442       1336788999999999887643

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.16  E-value=4.5e-11  Score=99.43  Aligned_cols=99  Identities=14%  Similarity=0.114  Sum_probs=74.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--------cCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--------SAL  191 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--------~~l  191 (318)
                      .++.+|||||||+ |..+..+++.+.++.+|+|+|+|+ +++           . .+++|+++|+.+.+        ...
T Consensus        21 ~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~-----------~-~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T 1ej0_A           21 KPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDP-----------I-VGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCC-----------C-TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-ccc-----------c-CcEEEEEcccccchhhhhhhccCCC
Confidence            6778999999997 555567777644679999999999 532           1 67999999998865        444


Q ss_pred             CCccEEEeccccCC-C-h--hHH------HHHHHHHHHhccCCeEEEEEcC
Q 021008          192 KDYEVVFLAALVGM-D-K--DEK------IRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       192 ~~fD~V~~aalvgm-~-~--~~k------~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +.||+|+....... . .  ...      .++++++.+.|+|||.+++...
T Consensus        87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            68999997653321 1 1  111      6899999999999999988653

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.15  E-value=2.8e-11  Score=120.61  Aligned_cols=109  Identities=15%  Similarity=0.168  Sum_probs=85.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V  197 (318)
                      ..++.+|||+||||++.|. .+|+....+++|+++|+|+.+++.+++++++ .|+.  +.++++|+.+++. ..+.||+|
T Consensus        99 ~~~g~~VLDlgaGpG~kt~-~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r-~G~~--v~~~~~Da~~l~~~~~~~FD~I  174 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTT-HLAARMGGKGLLLANEVDGKRVRGLLENVER-WGAP--LAVTQAPPRALAEAFGTYFHRV  174 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHH-HHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-HCCC--CEEECSCHHHHHHHHCSCEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHH-HHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCe--EEEEECCHHHhhhhccccCCEE
Confidence            3678999999999977775 5676543457999999999999999999998 7885  9999999998753 23589999


Q ss_pred             Eecccc---CC---Ch---------------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALV---GM---DK---------------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalv---gm---~~---------------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++++-.   |+   +.               ....++++++.+.|||||+|++..
T Consensus       175 l~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT  229 (464)
T 3m6w_A          175 LLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST  229 (464)
T ss_dssp             EEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            976532   11   00               112779999999999999999854

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.15  E-value=9.2e-11  Score=117.26  Aligned_cols=108  Identities=15%  Similarity=0.194  Sum_probs=84.9

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEEEe
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVVFL  199 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V~~  199 (318)
                      ++.+|||+||||++.|. .+|+....+++|+++|+|+.+++.+++++++ .|+. +++++++|+.+++. ..+.||.|++
T Consensus       117 ~g~~VLDl~aGpG~kt~-~lA~~~~~~g~V~avDis~~~l~~~~~n~~r-~g~~-nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTT-QISARMNNEGAILANEFSASRVKVLHANISR-CGIS-NVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHH-HHHHHTTTCSEEEEECSSHHHHHHHHHHHHH-HTCC-SEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHH-HHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCC-cEEEEeCCHHHhhhhccccCCEEEE
Confidence            78999999999977775 5776543468999999999999999999998 7774 79999999998754 3348999998


Q ss_pred             cccc---CC---Ch---------------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV---GM---DK---------------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv---gm---~~---------------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++-.   |+   +.               ....++++++.+.|||||+|++..
T Consensus       194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            6421   11   00               113578999999999999999854

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.15  E-value=2.2e-10  Score=109.90  Aligned_cols=98  Identities=12%  Similarity=0.127  Sum_probs=79.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .+..+|||||||+ |..+..+++++ |+.+++++|+ |++++.|++        ..+++|+.+|..+ +... . |+|++
T Consensus       200 ~~~~~vlDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~~p~-~-D~v~~  265 (364)
T 3p9c_A          200 EGLGTLVDVGGGV-GATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ--------FPGVTHVGGDMFK-EVPS-G-DTILM  265 (364)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC--------CTTEEEEECCTTT-CCCC-C-SEEEE
T ss_pred             cCCCEEEEeCCCC-CHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh--------cCCeEEEeCCcCC-CCCC-C-CEEEe
Confidence            5678999999996 66667788775 9999999999 888876542        2689999999987 4442 3 99997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.++..++|+++++.|||||+|++.+
T Consensus       266 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          266 KWILHDWSDQHCATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            7655 5666778899999999999999998876

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.15  E-value=1.4e-10  Score=112.40  Aligned_cols=107  Identities=9%  Similarity=0.120  Sum_probs=83.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCC-CeEEEEccccccCcC----CCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLST-RMFFHTTDIMNVSSA----LKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~-ri~f~~gDa~~l~~~----l~~  193 (318)
                      .++++|||+|||++ .-++.+|++   |+ +|+|||+|+++++.|+++++. .|+.. +++|+++|+.+....    ...
T Consensus       211 ~~~~~VLDl~cGtG-~~sl~la~~---ga~~V~~vD~s~~al~~A~~N~~~-n~~~~~~v~~~~~D~~~~l~~~~~~~~~  285 (385)
T 2b78_A          211 AAGKTVLNLFSYTA-AFSVAAAMG---GAMATTSVDLAKRSRALSLAHFEA-NHLDMANHQLVVMDVFDYFKYARRHHLT  285 (385)
T ss_dssp             TBTCEEEEETCTTT-HHHHHHHHT---TBSEEEEEESCTTHHHHHHHHHHH-TTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             cCCCeEEEEeeccC-HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHH-cCCCccceEEEECCHHHHHHHHHHhCCC
Confidence            57789999999975 455677763   55 899999999999999999998 78866 899999999874221    237


Q ss_pred             ccEEEecccc-----CC--C-hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALV-----GM--D-KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalv-----gm--~-~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||+|+++---     +.  + .....+++..+.+.|+|||.|++..
T Consensus       286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~  331 (385)
T 2b78_A          286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  331 (385)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            9999975211     01  1 2455678888999999999998866

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.14  E-value=2.2e-10  Score=111.33  Aligned_cols=105  Identities=15%  Similarity=0.145  Sum_probs=81.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++++|||||||. |+-+++.|+   .|+ +|++||.|+ +++.|+++++. -|++++|+++.+|+.++..+ .+||+|+
T Consensus        82 ~~~k~VLDvG~Gt-GiLs~~Aa~---aGA~~V~ave~s~-~~~~a~~~~~~-n~~~~~i~~i~~~~~~~~lp-e~~Dviv  154 (376)
T 4hc4_A           82 LRGKTVLDVGAGT-GILSIFCAQ---AGARRVYAVEASA-IWQQAREVVRF-NGLEDRVHVLPGPVETVELP-EQVDAIV  154 (376)
T ss_dssp             HTTCEEEEETCTT-SHHHHHHHH---TTCSEEEEEECST-THHHHHHHHHH-TTCTTTEEEEESCTTTCCCS-SCEEEEE
T ss_pred             cCCCEEEEeCCCc-cHHHHHHHH---hCCCEEEEEeChH-HHHHHHHHHHH-cCCCceEEEEeeeeeeecCC-ccccEEE
Confidence            4789999999996 666676675   365 799999997 78999999998 89999999999999987433 4899998


Q ss_pred             ecccc--CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV--GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv--gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+-  ......-..++....+.|+|||+++-..
T Consensus       155 sE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~  189 (376)
T 4hc4_A          155 SEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPAS  189 (376)
T ss_dssp             CCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCE
T ss_pred             eecccccccccchhhhHHHHHHhhCCCCceECCcc
Confidence            53211  1122355678888889999999986543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.14  E-value=7.6e-11  Score=114.19  Aligned_cols=109  Identities=15%  Similarity=0.029  Sum_probs=84.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC----CCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA----LKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~----l~~fD  195 (318)
                      .++++|||+|||++ .-++.+|+.  ...+|+|+|+|+++++.|+++++. .|+.++++|+++|+.+....    ...||
T Consensus       216 ~~~~~VLDl~~G~G-~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~-n~~~~~v~~~~~d~~~~~~~~~~~~~~fD  291 (396)
T 2as0_A          216 QPGDRVLDVFTYTG-GFAIHAAIA--GADEVIGIDKSPRAIETAKENAKL-NGVEDRMKFIVGSAFEEMEKLQKKGEKFD  291 (396)
T ss_dssp             CTTCEEEETTCTTT-HHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHH-TTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeEEEecCCCC-HHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEECCHHHHHHHHHhhCCCCC
Confidence            47899999999965 455677763  234999999999999999999988 78766999999999876432    34899


Q ss_pred             EEEecccc-CCC-------hhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          196 VVFLAALV-GMD-------KDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       196 ~V~~aalv-gm~-------~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +|+++.-- +..       .....+++.++.+.|+|||.+++-+-
T Consensus       292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            99986411 101       14567899999999999999888763

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.14  E-value=6.6e-11  Score=120.17  Aligned_cols=103  Identities=13%  Similarity=0.078  Sum_probs=77.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~V  197 (318)
                      ..|-|||||||| +|+-+..||+   .|++|||||+++.+|+.|+..+.+ .|. .+++|.++++.++.  ...++||+|
T Consensus        65 ~~~~~vLDvGCG-~G~~~~~la~---~ga~V~giD~~~~~i~~a~~~a~~-~~~-~~~~~~~~~~~~~~~~~~~~~fD~v  138 (569)
T 4azs_A           65 GRPLNVLDLGCA-QGFFSLSLAS---KGATIVGIDFQQENINVCRALAEE-NPD-FAAEFRVGRIEEVIAALEEGEFDLA  138 (569)
T ss_dssp             TSCCEEEEETCT-TSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHT-STT-SEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred             CCCCeEEEECCC-CcHHHHHHHh---CCCEEEEECCCHHHHHHHHHHHHh-cCC-CceEEEECCHHHHhhhccCCCccEE
Confidence            567899999999 6888899998   399999999999999999999887 443 36999999999873  344589999


Q ss_pred             Eecccc-CCChhHHHHHHHHHHHhccCCeEEE
Q 021008          198 FLAALV-GMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       198 ~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      +....+ +++..+...-+..+.+.+++++...
T Consensus       139 ~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~  170 (569)
T 4azs_A          139 IGLSVFHHIVHLHGIDEVKRLLSRLADVTQAV  170 (569)
T ss_dssp             EEESCHHHHHHHHCHHHHHHHHHHHHHHSSEE
T ss_pred             EECcchhcCCCHHHHHHHHHHHHHhcccccee
Confidence            865544 3222222233445667777776443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.13  E-value=5.6e-11  Score=118.24  Aligned_cols=110  Identities=12%  Similarity=0.107  Sum_probs=85.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V  197 (318)
                      +.++.+|||+||||++.|. .+|+....+++|+++|+|+.+++.+++++++ .|+. ++.++++|+.+++. ..+.||.|
T Consensus       103 ~~~g~~VLDlcaGpGgkt~-~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r-~g~~-nv~v~~~Da~~l~~~~~~~FD~I  179 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKST-QLAAQMKGKGLLVTNEIFPKRAKILSENIER-WGVS-NAIVTNHAPAELVPHFSGFFDRI  179 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHH-HHHHHHTTCSEEEEECSSHHHHHHHHHHHHH-HTCS-SEEEECCCHHHHHHHHTTCEEEE
T ss_pred             CCCCCEEEEECCCcCHHHH-HHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCC-ceEEEeCCHHHhhhhccccCCEE
Confidence            3678999999999977775 5666543457999999999999999999998 7884 69999999988753 23489999


Q ss_pred             Eecccc---CC---Chh---------------HHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALV---GM---DKD---------------EKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalv---gm---~~~---------------~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++++-.   |+   +..               ...++++++.+.|||||+|++..
T Consensus       180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  234 (456)
T 3m4x_A          180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST  234 (456)
T ss_dssp             EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            987632   21   111               11278999999999999999854

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.13  E-value=3.3e-10  Score=104.23  Aligned_cols=102  Identities=12%  Similarity=0.148  Sum_probs=78.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .+|.+|||||||.+|++..++     ++++++++|||+.+++.+++++..   .+.+.+|.++|....+.. ++||+|++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-----~~~~y~a~DId~~~i~~ar~~~~~---~g~~~~~~v~D~~~~~~~-~~~DvvLl  174 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-----GIASVWGCDIHQGLGDVITPFARE---KDWDFTFALQDVLCAPPA-EAGDLALI  174 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-----TCSEEEEEESBHHHHHHHHHHHHH---TTCEEEEEECCTTTSCCC-CBCSEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc-----cCCeEEEEeCCHHHHHHHHHHHHh---cCCCceEEEeecccCCCC-CCcchHHH
Confidence            578999999999877764332     699999999999999999999876   347789999999876543 38999975


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .-++ .+...+|...+ .+...|++++++|-..
T Consensus       175 lk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          175 FKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             ESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             HHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence            5222 22445556566 7778999999887655

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.12  E-value=2.3e-10  Score=108.90  Aligned_cols=98  Identities=14%  Similarity=0.150  Sum_probs=82.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|||+|||.++++ +. |+   .+.+|+++|+|+.+++.|+++++. .|+.++++|+++|+.+..   ..||+|++
T Consensus       194 ~~~~~VLDlg~G~G~~~-l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~-n~l~~~v~~~~~D~~~~~---~~fD~Vi~  264 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFS-IA-CK---NAKKIYAIDINPHAIELLKKNIKL-NKLEHKIIPILSDVREVD---VKGNRVIM  264 (336)
T ss_dssp             CTTCEEEETTCTTSHHH-HH-TT---TSSEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEESCGGGCC---CCEEEEEE
T ss_pred             CCCCEEEEccCccCHHH-Hh-cc---CCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEECChHHhc---CCCcEEEE
Confidence            57899999999975555 55 65   478999999999999999999998 788789999999999875   68999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +-.     ..-.++++.+.+.|+|||.+++.+
T Consensus       265 dpP-----~~~~~~l~~~~~~L~~gG~l~~~~  291 (336)
T 2yx1_A          265 NLP-----KFAHKFIDKALDIVEEGGVIHYYT  291 (336)
T ss_dssp             CCT-----TTGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCc-----HhHHHHHHHHHHHcCCCCEEEEEE
Confidence            631     112378999999999999988865

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.12  E-value=2.7e-09  Score=92.69  Aligned_cols=100  Identities=10%  Similarity=0.061  Sum_probs=77.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||+|||+ |..++.+++.  ...+|+|+|+|+.+++.|++.+.. .|+  +++|+++|+.+++   ..||+|+.
T Consensus        48 ~~~~~vlD~g~G~-G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~-~~~--~~~~~~~d~~~~~---~~~D~v~~  118 (207)
T 1wy7_A           48 IEGKVVADLGAGT-GVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGE-FKG--KFKVFIGDVSEFN---SRVDIVIM  118 (207)
T ss_dssp             STTCEEEEETCTT-CHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGG-GTT--SEEEEESCGGGCC---CCCSEEEE
T ss_pred             CCcCEEEEeeCCC-CHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHH-cCC--CEEEEECchHHcC---CCCCEEEE
Confidence            5788999999996 4555677763  234899999999999999999887 565  8999999999975   38999997


Q ss_pred             ccccCC-ChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AALVGM-DKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalvgm-~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      ..-.+. ......++++.+.+.+  |+.+++.
T Consensus       119 ~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          119 NPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             CCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             cCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            642221 2234567899999888  7776665

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.11  E-value=3.4e-10  Score=111.78  Aligned_cols=109  Identities=15%  Similarity=0.178  Sum_probs=85.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--CCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--KDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--~~fD  195 (318)
                      ..++.+|||+||||++.|. .+|+.+ ++ ++|+++|+|+.+++.+++++++ .|+ .+++++++|+.+++..+  +.||
T Consensus       257 ~~~g~~VLDlgaG~G~~t~-~la~~~-~~~~~v~a~D~s~~~l~~~~~~~~~-~g~-~~v~~~~~D~~~~~~~~~~~~fD  332 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTT-HLAELM-KNKGKIYAFDVDKMRMKRLKDFVKR-MGI-KIVKPLVKDARKAPEIIGEEVAD  332 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHH-HHHHHT-TTCSEEEEECSCHHHHHHHHHHHHH-TTC-CSEEEECSCTTCCSSSSCSSCEE
T ss_pred             CCCcCEEEEeCCCccHHHH-HHHHHc-CCCCEEEEEcCCHHHHHHHHHHHHH-cCC-CcEEEEEcChhhcchhhccCCCC
Confidence            3677899999999977765 567654 55 8999999999999999999998 777 47999999999876322  4799


Q ss_pred             EEEecccc---CC---ChhH---------------HHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALV---GM---DKDE---------------KIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalv---gm---~~~~---------------k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|++++-.   |+   ....               ..++++++.+.|||||+|++-+
T Consensus       333 ~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t  389 (450)
T 2yxl_A          333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT  389 (450)
T ss_dssp             EEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99985422   11   1111               1678999999999999999765

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.11  E-value=3.6e-10  Score=97.71  Aligned_cols=97  Identities=14%  Similarity=0.195  Sum_probs=71.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCC--CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLT--TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---------  188 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~--ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---------  188 (318)
                      .++.+|||||||++.++ +.+++++ +  +++|+|+|+++.+         .   . .+++|+++|+.+.+         
T Consensus        21 ~~~~~vLDlGcG~G~~~-~~l~~~~-~~~~~~v~gvD~s~~~---------~---~-~~v~~~~~d~~~~~~~~~~~~~~   85 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWC-QVILERT-KNYKNKIIGIDKKIMD---------P---I-PNVYFIQGEIGKDNMNNIKNINY   85 (201)
T ss_dssp             CTTEEEEEESCTTCHHH-HHHHHHT-TTSCEEEEEEESSCCC---------C---C-TTCEEEECCTTTTSSCCC-----
T ss_pred             CCCCEEEEeCCCCCHHH-HHHHHHc-CCCCceEEEEeCCccC---------C---C-CCceEEEccccchhhhhhccccc
Confidence            57789999999986655 5677664 5  7999999999931         1   1 56899999998865         


Q ss_pred             ----------------cCCCCccEEEeccccCC---ChhHH-------HHHHHHHHHhccCCeEEEEEc
Q 021008          189 ----------------SALKDYEVVFLAALVGM---DKDEK-------IRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       189 ----------------~~l~~fD~V~~aalvgm---~~~~k-------~~vl~~l~r~LkpGg~lv~r~  231 (318)
                                      ....+||+|+.......   +..+.       .++++++.+.|||||.+++..
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A           86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence                            23458999997643321   11122       248899999999999999855

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.11  E-value=2e-10  Score=108.20  Aligned_cols=112  Identities=12%  Similarity=0.157  Sum_probs=86.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC-CC--CCCCeEEEEccccccCcCCC-Cc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD-PD--LSTRMFFHTTDIMNVSSALK-DY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-~g--l~~ri~f~~gDa~~l~~~l~-~f  194 (318)
                      .+.|+|||.||.|. |.++..+.+ |.+..+|+.|||||++++.|++.+... .|  -..|++++.+|+........ .|
T Consensus        81 ~p~pk~VLIiGgGd-G~~~revlk-~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~y  158 (294)
T 3o4f_A           81 HGHAKHVLIIGGGD-GAMLREVTR-HKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTF  158 (294)
T ss_dssp             SSCCCEEEEESCTT-SHHHHHHHT-CTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCE
T ss_pred             CCCCCeEEEECCCc-hHHHHHHHH-cCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccC
Confidence            37899999999995 566656664 556789999999999999999987530 11  24799999999998654433 89


Q ss_pred             cEEEeccccCCCh---hHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          195 EVVFLAALVGMDK---DEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       195 D~V~~aalvgm~~---~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+|++++.-+...   --..++++.+++.|+|||++++..+
T Consensus       159 DvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          159 DVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             EEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence            9999987542211   1235799999999999999999763

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.11  E-value=2.6e-10  Score=108.28  Aligned_cols=98  Identities=11%  Similarity=0.165  Sum_probs=78.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++++ |+.+++++|+ +.+++.|++       . .+++|+.+|..+ +.  ..||+|++
T Consensus       187 ~~~~~vlDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~-~~v~~~~~d~~~-~~--p~~D~v~~  252 (352)
T 1fp2_A          187 DGLESIVDVGGGT-GTTAKIICETF-PKLKCIVFDR-PQVVENLSG-------S-NNLTYVGGDMFT-SI--PNADAVLL  252 (352)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-------B-TTEEEEECCTTT-CC--CCCSEEEE
T ss_pred             ccCceEEEeCCCc-cHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc-------C-CCcEEEeccccC-CC--CCccEEEe
Confidence            5678999999996 66667788765 8999999999 999887754       1 349999999976 32  25999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccC---CeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAP---GALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~Lkp---Gg~lv~r~  231 (318)
                      ...+ .++.++..++++++++.|||   ||+|++.+
T Consensus       253 ~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          253 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             ehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            6544 45555666999999999999   99998876

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.11  E-value=1.3e-10  Score=112.54  Aligned_cols=108  Identities=11%  Similarity=0.016  Sum_probs=84.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC-CCCeEEEEccccccCcC----CCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL-STRMFFHTTDIMNVSSA----LKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl-~~ri~f~~gDa~~l~~~----l~~f  194 (318)
                      .++++|||+|||+++++ +.+|+.  ...+|+|+|+|+++++.|+++++. .|+ .++++|+++|+.+....    ...|
T Consensus       219 ~~~~~VLDl~cG~G~~s-l~la~~--g~~~V~~vD~s~~al~~a~~n~~~-ngl~~~~v~~~~~D~~~~~~~~~~~~~~f  294 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFA-VSALMG--GCSQVVSVDTSQEALDIARQNVEL-NKLDLSKAEFVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_dssp             CTTCEEEEESCTTCSHH-HHHHHT--TCSEEEEEESCHHHHHHHHHHHHH-TTCCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hCCCeEEEeeccCCHHH-HHHHHC--CCCEEEEEECCHHHHHHHHHHHHH-cCCCccceEEEECCHHHHHHHHHhcCCCC
Confidence            57899999999976555 677763  135999999999999999999988 777 66899999999876332    2489


Q ss_pred             cEEEecccc-C-------CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALV-G-------MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalv-g-------m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+++.-- +       -......+++.++.+.|+|||.+++-.
T Consensus       295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  339 (396)
T 3c0k_A          295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFS  339 (396)
T ss_dssp             EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            999987311 0       011466789999999999999998865

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.10  E-value=2.9e-10  Score=110.90  Aligned_cols=105  Identities=13%  Similarity=0.027  Sum_probs=80.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-CCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-LKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-l~~fD~V~  198 (318)
                      .++++|||+|||++++| +.+|+   .|+.|+++|+|+.+++.|+++++. .|+..  +|.++|+.+.... .+.||+|+
T Consensus       213 ~~g~~VLDlg~GtG~~s-l~~a~---~ga~V~avDis~~al~~a~~n~~~-ng~~~--~~~~~D~~~~l~~~~~~fD~Ii  285 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFA-LRAAR---KGAYALAVDKDLEALGVLDQAALR-LGLRV--DIRHGEALPTLRGLEGPFHHVL  285 (393)
T ss_dssp             CTTCEEEEESCTTTHHH-HHHHH---TTCEEEEEESCHHHHHHHHHHHHH-HTCCC--EEEESCHHHHHHTCCCCEEEEE
T ss_pred             cCCCeEEEcccchhHHH-HHHHH---cCCeEEEEECCHHHHHHHHHHHHH-hCCCC--cEEEccHHHHHHHhcCCCCEEE
Confidence            45899999999975555 66776   377899999999999999999987 67754  5669999885432 23599999


Q ss_pred             eccccCCC---------hhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMD---------KDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~---------~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++.-. +.         .....+++..+.+.|+|||.|++-+-
T Consensus       286 ~dpP~-f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          286 LDPPT-LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             ECCCC-CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ECCCc-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            86421 01         13556899999999999999986653

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.10  E-value=4.4e-11  Score=115.80  Aligned_cols=101  Identities=14%  Similarity=0.185  Sum_probs=77.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCe-EEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRM-FFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri-~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++.+|||||||. |..+..+++   .|.+|+|+|+|+.+++.|++.     +..... .|..+++.++++..++||+|+
T Consensus       106 ~~~~~VLDiGcG~-G~~~~~l~~---~g~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~l~~~~~~fD~I~  176 (416)
T 4e2x_A          106 GPDPFIVEIGCND-GIMLRTIQE---AGVRHLGFEPSSGVAAKAREK-----GIRVRTDFFEKATADDVRRTEGPANVIY  176 (416)
T ss_dssp             SSSCEEEEETCTT-TTTHHHHHH---TTCEEEEECCCHHHHHHHHTT-----TCCEECSCCSHHHHHHHHHHHCCEEEEE
T ss_pred             CCCCEEEEecCCC-CHHHHHHHH---cCCcEEEECCCHHHHHHHHHc-----CCCcceeeechhhHhhcccCCCCEEEEE
Confidence            5778999999996 556667776   378999999999999999875     222222 244566666665557899999


Q ss_pred             ecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....+ ++  .+..++++++++.|||||++++..
T Consensus       177 ~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          177 AANTLCHI--PYVQSVLEGVDALLAPDGVFVFED  208 (416)
T ss_dssp             EESCGGGC--TTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECChHHhc--CCHHHHHHHHHHHcCCCeEEEEEe
Confidence            76544 33  478999999999999999999875

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.09  E-value=1.5e-10  Score=111.85  Aligned_cols=106  Identities=13%  Similarity=0.012  Sum_probs=83.7

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC----CCCccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA----LKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~----l~~fD~  196 (318)
                      ++++|||+|||++ .-++.+|+.   +.+|+|+|+|+.+++.|+++++. .|+.. ++|+++|+.+....    ...||+
T Consensus       209 ~~~~VLDlg~G~G-~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~-n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYAG-GFALHLALG---FREVVAVDSSAEALRRAEENARL-NGLGN-VRVLEANAFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             CEEEEEEETCTTT-HHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHH-TTCTT-EEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeeeccC-HHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHH-cCCCC-ceEEECCHHHHHHHHHhcCCCeeE
Confidence            6789999999965 555677764   67999999999999999999988 77755 99999999876432    348999


Q ss_pred             EEecccc-CCC-------hhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          197 VFLAALV-GMD-------KDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       197 V~~aalv-gm~-------~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+++.-- +..       .....+++..+.+.|+|||.+++-..
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9986411 111       14567799999999999999988763

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.09  E-value=4e-10  Score=107.89  Aligned_cols=98  Identities=14%  Similarity=0.190  Sum_probs=78.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++++ |+.+++++|+ +.+++.|++       . .+++|+.+|..+ +..  .||+|++
T Consensus       208 ~~~~~vLDvG~G~-G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~-------~-~~v~~~~~d~~~-~~~--~~D~v~~  273 (372)
T 1fp1_D          208 EGISTLVDVGGGS-GRNLELIISKY-PLIKGINFDL-PQVIENAPP-------L-SGIEHVGGDMFA-SVP--QGDAMIL  273 (372)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-------C-TTEEEEECCTTT-CCC--CEEEEEE
T ss_pred             CCCCEEEEeCCCC-cHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh-------c-CCCEEEeCCccc-CCC--CCCEEEE
Confidence            5678999999996 56667788765 8999999999 999887653       1 469999999987 332  4999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.++..++++++++.|||||+|++.+
T Consensus       274 ~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          274 KAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             ESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            6544 4555555699999999999999998875

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.08  E-value=7.7e-10  Score=115.32  Aligned_cols=108  Identities=10%  Similarity=0.126  Sum_probs=85.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCC-CCeEEEEcccccc-CcCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLS-TRMFFHTTDIMNV-SSALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~-~ri~f~~gDa~~l-~~~l~~fD~  196 (318)
                      .++++|||+|||+++++ +.+|+   .|+ +|++||+|+.++++|+++++. .|+. ++++|+++|+.+. +...+.||+
T Consensus       538 ~~g~~VLDlg~GtG~~s-l~aa~---~ga~~V~aVD~s~~al~~a~~N~~~-ngl~~~~v~~i~~D~~~~l~~~~~~fD~  612 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSAT-VHAGL---GGARSTTTVDMSRTYLEWAERNLRL-NGLTGRAHRLIQADCLAWLREANEQFDL  612 (703)
T ss_dssp             CTTCEEEEESCTTCHHH-HHHHH---TTCSEEEEEESCHHHHHHHHHHHHH-TTCCSTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             cCCCcEEEeeechhHHH-HHHHH---CCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHhcCCCccE
Confidence            57899999999986655 66665   255 699999999999999999998 7886 6899999999984 333358999


Q ss_pred             EEecccc-C--------C-ChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          197 VFLAALV-G--------M-DKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       197 V~~aalv-g--------m-~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+++.-- +        . ......+++..+.+.|+|||.|++...
T Consensus       613 Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~  658 (703)
T 3v97_A          613 IFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN  658 (703)
T ss_dssp             EEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            9986411 0        0 125677899999999999999987653

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.07  E-value=5.1e-10  Score=109.75  Aligned_cols=108  Identities=15%  Similarity=0.146  Sum_probs=83.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~  196 (318)
                      ..++.+|||+||||++.|. .+|+. .++++|+++|+|+.+++.+++.++. .|+  +++++++|+.+++  ...+.||.
T Consensus       244 ~~~g~~VLDlgaG~G~~t~-~la~~-~~~~~v~a~D~~~~~l~~~~~~~~~-~g~--~~~~~~~D~~~~~~~~~~~~fD~  318 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTT-HILEV-APEAQVVAVDIDEQRLSRVYDNLKR-LGM--KATVKQGDGRYPSQWCGEQQFDR  318 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHH-HHHHH-CTTCEEEEEESSTTTHHHHHHHHHH-TTC--CCEEEECCTTCTHHHHTTCCEEE
T ss_pred             CCCcCeEEEECCCchHHHH-HHHHH-cCCCEEEEECCCHHHHHHHHHHHHH-cCC--CeEEEeCchhhchhhcccCCCCE
Confidence            3678899999999977765 56665 3668999999999999999999988 666  4899999998875  23357999


Q ss_pred             EEecccc---CC---Chh---------------HHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALV---GM---DKD---------------EKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalv---gm---~~~---------------~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |++++-.   |+   ...               ...++++++.+.|||||++++..
T Consensus       319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9975422   11   111               11588999999999999999865

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.05  E-value=5.7e-10  Score=103.81  Aligned_cols=75  Identities=12%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||++.+| ..++++   +.+|+|||+|+.+++.+++.+.. .|...+++++++|+.+++.  ..||+|+
T Consensus        26 ~~~~~~VLDiG~G~G~lt-~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~D~~~~~~--~~fD~vv   98 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMT-VKLLEK---AKKVVACELDPRLVAELHKRVQG-TPVASKLQVLVGDVLKTDL--PFFDTCV   98 (285)
T ss_dssp             CCTTCEEEEECCTTSTTH-HHHHHH---SSEEEEEESCHHHHHHHHHHHTT-STTGGGEEEEESCTTTSCC--CCCSEEE
T ss_pred             CCCCCEEEEEcCcccHHH-HHHHhh---CCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEEcceecccc--hhhcEEE
Confidence            367789999999975555 567764   67999999999999999998876 6666789999999988643  4799988


Q ss_pred             ec
Q 021008          199 LA  200 (318)
Q Consensus       199 ~a  200 (318)
                      ..
T Consensus        99 ~n  100 (285)
T 1zq9_A           99 AN  100 (285)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.05  E-value=6.6e-10  Score=107.13  Aligned_cols=107  Identities=12%  Similarity=0.018  Sum_probs=81.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||+|||. |.-++.+|+. .+.++|+|+|+|+.+++.|+++++. .|+.++++|+++|+.+++...+.||+|+
T Consensus       215 ~~~~~~vLD~gCGs-G~~~i~~a~~-~~~~~v~g~Dis~~~l~~A~~n~~~-~gl~~~i~~~~~D~~~~~~~~~~fD~Ii  291 (373)
T 3tm4_A          215 ELDGGSVLDPMCGS-GTILIELALR-RYSGEIIGIEKYRKHLIGAEMNALA-AGVLDKIKFIQGDATQLSQYVDSVDFAI  291 (373)
T ss_dssp             TCCSCCEEETTCTT-CHHHHHHHHT-TCCSCEEEEESCHHHHHHHHHHHHH-TTCGGGCEEEECCGGGGGGTCSCEEEEE
T ss_pred             cCCCCEEEEccCcC-cHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHH-cCCCCceEEEECChhhCCcccCCcCEEE
Confidence            36789999999996 5555677764 2445999999999999999999998 8888899999999999987667899999


Q ss_pred             eccccCC-------ChhHHHHHHHHHHHhccCCeEEEE
Q 021008          199 LAALVGM-------DKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       199 ~aalvgm-------~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ..--.+.       -..-+.++++++.+++ +|+.+++
T Consensus       292 ~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i  328 (373)
T 3tm4_A          292 SNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI  328 (373)
T ss_dssp             EECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred             ECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence            7532111       0123477889999988 3333333

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.04  E-value=4.5e-10  Score=96.05  Aligned_cols=94  Identities=14%  Similarity=0.047  Sum_probs=71.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..++.+|++   + +|+|+|+|+.+++.      .     .+++|+++|+.+ +...+.||+|+.
T Consensus        22 ~~~~~vLD~GcG~-G~~~~~l~~~---~-~v~gvD~s~~~~~~------~-----~~~~~~~~d~~~-~~~~~~fD~i~~   84 (170)
T 3q87_B           22 LEMKIVLDLGTST-GVITEQLRKR---N-TVVSTDLNIRALES------H-----RGGNLVRADLLC-SINQESVDVVVF   84 (170)
T ss_dssp             CCSCEEEEETCTT-CHHHHHHTTT---S-EEEEEESCHHHHHT------C-----SSSCEEECSTTT-TBCGGGCSEEEE
T ss_pred             CCCCeEEEeccCc-cHHHHHHHhc---C-cEEEEECCHHHHhc------c-----cCCeEEECChhh-hcccCCCCEEEE
Confidence            5678999999996 6666778763   4 99999999999987      2     568999999987 344468999997


Q ss_pred             ccccC-CCh-------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVG-MDK-------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvg-m~~-------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..... .+.       .+..+++.++.+.+ |||.+++-.
T Consensus        85 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           85 NPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             CCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             CCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            54221 111       13467888899999 999998754

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.02  E-value=7e-10  Score=97.26  Aligned_cols=121  Identities=19%  Similarity=0.222  Sum_probs=80.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC---------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA---------  190 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~---------  190 (318)
                      .++.+|||+||||+++| ..+|++   +++|+|||+++..         .    ..+++|+++|+.+.+..         
T Consensus        24 ~~g~~VLDlG~G~G~~s-~~la~~---~~~V~gvD~~~~~---------~----~~~v~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWT-QVLNSL---ARKIISIDLQEME---------E----IAGVRFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             CTTCEEEEESCTTCHHH-HHHTTT---CSEEEEEESSCCC---------C----CTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeecCCHHH-HHHHHc---CCcEEEEeccccc---------c----CCCeEEEEccccCHHHHHHHHHHhhc
Confidence            67899999999997777 467763   8999999999841         1    25799999999875310         


Q ss_pred             --CCCccEEEecccc---CCCh-------hHHHHHHHHHHHhccCCeEEEEEcCCCcccccccCCCccccC-CcEEEEEE
Q 021008          191 --LKDYEVVFLAALV---GMDK-------DEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLL-GFEVLSVF  257 (318)
Q Consensus       191 --l~~fD~V~~aalv---gm~~-------~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~v~~~~l~-gf~~~~~~  257 (318)
                        .+.||+|+.+...   |...       .....+++.+.++|||||.|++-...+...   +.+- ..++ .|..+.+.
T Consensus        87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~---~~~~-~~l~~~F~~v~~~  162 (191)
T 3dou_A           87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMT---NDFI-AIWRKNFSSYKIS  162 (191)
T ss_dssp             HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHH---HHHH-HHHGGGEEEEEEE
T ss_pred             ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCH---HHHH-HHHHHhcCEEEEE
Confidence              0389999976422   2111       123578888999999999999866444321   1000 1122 57777777


Q ss_pred             cCch
Q 021008          258 HPTD  261 (318)
Q Consensus       258 ~p~~  261 (318)
                      .|..
T Consensus       163 kP~a  166 (191)
T 3dou_A          163 KPPA  166 (191)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            7743

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.02  E-value=2.6e-09  Score=92.61  Aligned_cols=97  Identities=16%  Similarity=0.172  Sum_probs=71.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||+|||. |..++.+++.  +..+|+|+|+|+.+++.|++.+.       +++|+++|+.+++   +.||+|+.
T Consensus        50 ~~~~~vlD~gcG~-G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~d~~~~~---~~~D~v~~  116 (200)
T 1ne2_A           50 IGGRSVIDAGTGN-GILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEIS---GKYDTWIM  116 (200)
T ss_dssp             SBTSEEEEETCTT-CHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGCC---CCEEEEEE
T ss_pred             CCCCEEEEEeCCc-cHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC-------CCEEEECcHHHCC---CCeeEEEE
Confidence            5788999999996 5555677763  33479999999999999998754       6899999999975   58999997


Q ss_pred             ccccC-CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVG-MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvg-m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..-.+ +......++++++.+.+  |+++++.+
T Consensus       117 ~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~  147 (200)
T 1ne2_A          117 NPPFGSVVKHSDRAFIDKAFETS--MWIYSIGN  147 (200)
T ss_dssp             CCCC-------CHHHHHHHHHHE--EEEEEEEE
T ss_pred             CCCchhccCchhHHHHHHHHHhc--CcEEEEEc
Confidence            65322 12233357899999988  66655554

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.01  E-value=4.3e-11  Score=108.53  Aligned_cols=97  Identities=10%  Similarity=-0.009  Sum_probs=61.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCC--CCeEEEE-ccccccCcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLS--TRMFFHT-TDIMNVSSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~--~ri~f~~-gDa~~l~~~l~~fD  195 (318)
                      ..+++|||||||++. .+.+++++   | .+|+|||+|++++++|++...+ ....  .++++.. +|.....++...||
T Consensus        36 ~~g~~VLDiGcGtG~-~t~~la~~---g~~~V~gvDis~~ml~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~D  110 (232)
T 3opn_A           36 INGKTCLDIGSSTGG-FTDVMLQN---GAKLVYALDVGTNQLAWKIRSDER-VVVMEQFNFRNAVLADFEQGRPSFTSID  110 (232)
T ss_dssp             CTTCEEEEETCTTSH-HHHHHHHT---TCSEEEEECSSCCCCCHHHHTCTT-EEEECSCCGGGCCGGGCCSCCCSEEEEC
T ss_pred             CCCCEEEEEccCCCH-HHHHHHhc---CCCEEEEEcCCHHHHHHHHHhCcc-ccccccceEEEeCHhHcCcCCCCEEEEE
Confidence            457899999999755 45677763   5 4999999999999998775433 1111  1233332 11111011222344


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      ++|..      .   .+++.+++++|||||.+++-
T Consensus       111 ~v~~~------l---~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          111 VSFIS------L---DLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             CSSSC------G---GGTHHHHHHHSCTTCEEEEE
T ss_pred             EEhhh------H---HHHHHHHHHhccCCCEEEEE
Confidence            44322      1   56999999999999998874

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.00  E-value=9.2e-10  Score=102.42  Aligned_cols=105  Identities=10%  Similarity=0.087  Sum_probs=81.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..|.+|||||||.+|++..++ .. .|.++++++|||+.+++.+++++.. .|+.  .+|.++|...-+ .-..||++++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~-~~-~p~a~y~a~DId~~~le~a~~~l~~-~g~~--~~~~v~D~~~~~-p~~~~DvaL~  204 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWM-GL-PAETVYIASDIDARLVGFVDEALTR-LNVP--HRTNVADLLEDR-LDEPADVTLL  204 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTT-TC-CTTCEEEEEESBHHHHHHHHHHHHH-TTCC--EEEEECCTTTSC-CCSCCSEEEE
T ss_pred             CCCceeeeeccCccHHHHHHH-hh-CCCCEEEEEeCCHHHHHHHHHHHHh-cCCC--ceEEEeeecccC-CCCCcchHHH
Confidence            568999999999888876544 33 4899999999999999999999988 5654  788888887643 2348999986


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .-++ .++...|...+ .+...|+|||++|-..
T Consensus       205 lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp  236 (281)
T 3lcv_B          205 LKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFP  236 (281)
T ss_dssp             TTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEE
T ss_pred             HHHHHHhhhhhhHHHH-HHHHHhCCCCEEEecc
Confidence            5433 33455666677 8899999999998755

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.00  E-value=4.4e-10  Score=98.32  Aligned_cols=121  Identities=14%  Similarity=0.154  Sum_probs=85.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||++ ..+..+      +.+|+|+|+|+.                 +++|+++|+.+++...+.||+|+.
T Consensus        66 ~~~~~vLDiG~G~G-~~~~~l------~~~v~~~D~s~~-----------------~~~~~~~d~~~~~~~~~~fD~v~~  121 (215)
T 2zfu_A           66 PASLVVADFGCGDC-RLASSI------RNPVHCFDLASL-----------------DPRVTVCDMAQVPLEDESVDVAVF  121 (215)
T ss_dssp             CTTSCEEEETCTTC-HHHHHC------CSCEEEEESSCS-----------------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred             CCCCeEEEECCcCC-HHHHHh------hccEEEEeCCCC-----------------CceEEEeccccCCCCCCCEeEEEE
Confidence            56789999999975 433333      468999999996                 467899999998766678999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccccCCCccc----c--CCcEEEEEEcCchhHHHHHHHHhhc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSD----L--LGFEVLSVFHPTDEVINSVVLARKY  273 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~v~~~~----l--~gf~~~~~~~p~~~VvNsvv~ark~  273 (318)
                      ...++.  .+..++++++.+.|+|||.+++.+...  .  ++  ++++    +  .||++.......+.  ..++.++|.
T Consensus       122 ~~~l~~--~~~~~~l~~~~~~L~~gG~l~i~~~~~--~--~~--~~~~~~~~l~~~Gf~~~~~~~~~~~--~~~~~~~k~  191 (215)
T 2zfu_A          122 CLSLMG--TNIRDFLEEANRVLKPGGLLKVAEVSS--R--FE--DVRTFLRAVTKLGFKIVSKDLTNSH--FFLFDFQKT  191 (215)
T ss_dssp             ESCCCS--SCHHHHHHHHHHHEEEEEEEEEEECGG--G--CS--CHHHHHHHHHHTTEEEEEEECCSTT--CEEEEEEEC
T ss_pred             ehhccc--cCHHHHHHHHHHhCCCCeEEEEEEcCC--C--CC--CHHHHHHHHHHCCCEEEEEecCCCe--EEEEEEEec
Confidence            654442  577899999999999999999876322  0  11  2221    2  28988765544332  235666665


Q ss_pred             c
Q 021008          274 V  274 (318)
Q Consensus       274 ~  274 (318)
                      .
T Consensus       192 ~  192 (215)
T 2zfu_A          192 G  192 (215)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.99  E-value=2.5e-09  Score=105.32  Aligned_cols=99  Identities=19%  Similarity=0.152  Sum_probs=77.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||+|||. |.-++.+|+.   +.+|+|+|+|+++++.|+++++. .|+.  ++|+++|+.++...  .||+|++
T Consensus       289 ~~~~~VLDlgcG~-G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~-ngl~--v~~~~~d~~~~~~~--~fD~Vv~  359 (425)
T 2jjq_A          289 VEGEKILDMYSGV-GTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEI-NNVD--AEFEVASDREVSVK--GFDTVIV  359 (425)
T ss_dssp             CCSSEEEEETCTT-THHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH-HTCC--EEEEECCTTTCCCT--TCSEEEE
T ss_pred             CCCCEEEEeeccc-hHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHH-cCCc--EEEEECChHHcCcc--CCCEEEE
Confidence            6788999999996 5555678873   78999999999999999999887 6664  99999999987543  7999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +---   ......+++.+. .++|||++++.-
T Consensus       360 dPPr---~g~~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          360 DPPR---AGLHPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             CCCT---TCSCHHHHHHHH-HHCCSEEEEEES
T ss_pred             cCCc---cchHHHHHHHHH-hcCCCcEEEEEC
Confidence            6421   112235666665 599999988754

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.99  E-value=4.4e-10  Score=108.13  Aligned_cols=100  Identities=12%  Similarity=0.059  Sum_probs=76.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--------  191 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--------  191 (318)
                      ..+.+|||+|||.+ .-++.+|+.   ..+|+|+|+|+++++.|+++++. .|+ ++++|+++|+.++...+        
T Consensus       212 ~~~~~vLDl~cG~G-~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~-ng~-~~v~~~~~d~~~~~~~~~~~~~~~~  285 (369)
T 3bt7_A          212 GSKGDLLELYCGNG-NFSLALARN---FDRVLATEIAKPSVAAAQYNIAA-NHI-DNVQIIRMAAEEFTQAMNGVREFNR  285 (369)
T ss_dssp             TCCSEEEEESCTTS-HHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHH-TTC-CSEEEECCCSHHHHHHHSSCCCCTT
T ss_pred             cCCCEEEEccCCCC-HHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHH-cCC-CceEEEECCHHHHHHHHhhcccccc
Confidence            34689999999964 555678863   57999999999999999999987 777 58999999998753211        


Q ss_pred             --------CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          192 --------KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       192 --------~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                              ..||+|+++-       ++..+..++.+.++|||.+++-+-
T Consensus       286 l~~~~~~~~~fD~Vv~dP-------Pr~g~~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          286 LQGIDLKSYQCETIFVDP-------PRSGLDSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             GGGSCGGGCCEEEEEECC-------CTTCCCHHHHHHHTTSSEEEEEES
T ss_pred             ccccccccCCCCEEEECc-------CccccHHHHHHHHhCCCEEEEEEC
Confidence                    2699999764       122344455677789999888763

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.98  E-value=2.7e-10  Score=96.95  Aligned_cols=89  Identities=11%  Similarity=0.179  Sum_probs=71.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc---CCCCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS---ALKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~---~l~~fD  195 (318)
                      ..++.+||+||||.                  +++|+|+++++.|++....      +++|+++|+.+++.   ..++||
T Consensus        10 ~~~g~~vL~~~~g~------------------v~vD~s~~ml~~a~~~~~~------~~~~~~~d~~~~~~~~~~~~~fD   65 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS------------------SPVEALKGLVDKLQALTGN------EGRVSVENIKQLLQSAHKESSFD   65 (176)
T ss_dssp             CCTTSEEEEEECTT------------------SCHHHHHHHHHHHHHHTTT------TSEEEEEEGGGGGGGCCCSSCEE
T ss_pred             CCCCCEEEEecCCc------------------eeeeCCHHHHHHHHHhccc------CcEEEEechhcCccccCCCCCEe
Confidence            47889999999984                  1389999999999987642      48999999999876   566899


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+....++.-..+..++++++++.|||||.+++..
T Consensus        66 ~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~  101 (176)
T 2ld4_A           66 IILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKE  101 (176)
T ss_dssp             EEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEc
Confidence            999754332111456889999999999999999954

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.98  E-value=3.3e-09  Score=100.24  Aligned_cols=109  Identities=17%  Similarity=0.180  Sum_probs=81.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC---CCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL---KDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l---~~fD  195 (318)
                      +.++.+|||+||||++.|. .+|+...++.+|+++|+|+.+++.+++++++ .|+ .+++++++|+.+++...   ..||
T Consensus       100 ~~~g~~VLDlcaG~G~kt~-~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r-~g~-~~v~~~~~D~~~~~~~~~~~~~fD  176 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTS-HLAALLKNQGKIFAFDLDAKRLASMATLLAR-AGV-SCCELAEEDFLAVSPSDPRYHEVH  176 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHH-HHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-TTC-CSEEEEECCGGGSCTTCGGGTTEE
T ss_pred             CCCCCEEEEeCCChhHHHH-HHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCC-CeEEEEeCChHhcCccccccCCCC
Confidence            3678999999999987775 5665433568999999999999999999998 787 57999999999875432   4799


Q ss_pred             EEEecccc---CC-Ch--hH-----------------HHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALV---GM-DK--DE-----------------KIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalv---gm-~~--~~-----------------k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .|++++-.   |+ ..  ..                 ..+++++..+.++ ||+|++..
T Consensus       177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT  234 (309)
T 2b9e_A          177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST  234 (309)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred             EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence            99986432   22 11  00                 1246777777776 99888754

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.96  E-value=2e-10  Score=106.90  Aligned_cols=105  Identities=7%  Similarity=0.045  Sum_probs=71.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE--EccccccCcCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH--TTDIMNVSSALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~--~gDa~~l~~~l~~fD~  196 (318)
                      ..++.+||||||||+++| .++|++    .+|+|||+++ +...+++........+.++.|+  ++|+.+++  .+.||+
T Consensus        80 ~~~g~~VLDlGcGtG~~s-~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~  151 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWS-YYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADT  151 (276)
T ss_dssp             CCCCEEEEEESCTTCHHH-HHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSE
T ss_pred             CCCCCEEEEeccCCCHHH-HHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCE
Confidence            367889999999997776 567763    6899999999 4333322111001223379999  99999986  358999


Q ss_pred             EEeccc--cCCChhHH---HHHHHHHHHhccCCe--EEEEEc
Q 021008          197 VFLAAL--VGMDKDEK---IRVIDHLAKYMAPGA--LLMLRS  231 (318)
Q Consensus       197 V~~aal--vgm~~~~k---~~vl~~l~r~LkpGg--~lv~r~  231 (318)
                      |+.+..  .+....+.   .++++.+.+.|||||  .+++..
T Consensus       152 Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          152 VLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             EEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             EEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            997642  11111111   248999999999999  988854

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.96  E-value=1.5e-09  Score=101.77  Aligned_cols=107  Identities=10%  Similarity=0.036  Sum_probs=87.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCC----CCcEEEEEeCCh--------------------------HHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHL----TTTCFDNYDIDP--------------------------SANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~----~ga~V~gvDid~--------------------------~ai~~Ar~~~~~  169 (318)
                      ..|.+||++|+. .|+|++++|+...    ++.+|+++|..+                          ..++.+++++++
T Consensus       105 ~~pg~IlEiGv~-~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~  183 (282)
T 2wk1_A          105 NVPGDLVETGVW-RGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN  183 (282)
T ss_dssp             TCCCEEEEECCT-TSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH
T ss_pred             CCCCcEEEeecC-chHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH
Confidence            578999999998 7999999986421    478999999642                          146788999998


Q ss_pred             CCCC-CCCeEEEEccccccCcCC--CCccEEEeccccCCCh-hHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          170 DPDL-STRMFFHTTDIMNVSSAL--KDYEVVFLAALVGMDK-DEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       170 ~~gl-~~ri~f~~gDa~~l~~~l--~~fD~V~~aalvgm~~-~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                       .|+ .++|+++.||+.+.....  ..||+||+++    ++ +.....|+.+.++|+|||++++++.
T Consensus       184 -~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa----D~y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          184 -YDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG----DLYESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             -TTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC----CSHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             -cCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC----CccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence             898 499999999998743333  3799999998    44 4567899999999999999999985

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.95  E-value=2.2e-09  Score=92.19  Aligned_cols=99  Identities=13%  Similarity=0.148  Sum_probs=70.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCC--------cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE-EccccccCc-
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTT--------TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH-TTDIMNVSS-  189 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~g--------a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~-~gDa~~l~~-  189 (318)
                      .++.+|||||||+ |..++.+|+++...        ++|+|+|+|+.+            +. .+++++ .+|+.+... 
T Consensus        21 ~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------------~~-~~~~~~~~~d~~~~~~~   86 (196)
T 2nyu_A           21 RPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------------PL-EGATFLCPADVTDPRTS   86 (196)
T ss_dssp             CTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------------CC-TTCEEECSCCTTSHHHH
T ss_pred             CCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhcc------------cC-CCCeEEEeccCCCHHHH
Confidence            6789999999998 55567788764222        899999999931            12 568899 999876421 


Q ss_pred             -------CCCCccEEEecccc---CCChhHH-------HHHHHHHHHhccCCeEEEEEcC
Q 021008          190 -------ALKDYEVVFLAALV---GMDKDEK-------IRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       190 -------~l~~fD~V~~aalv---gm~~~~k-------~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                             ...+||+|+.+...   +....+.       .++++++.+.|||||.+++...
T Consensus        87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           87 QRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence                   12379999964311   1111222       4789999999999999998764

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.95  E-value=1.9e-09  Score=102.44  Aligned_cols=98  Identities=9%  Similarity=0.163  Sum_probs=77.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..+++++ |+.+++++|+ +.+++.|++       . .+++|+.+|..+ +..  +||+|++
T Consensus       192 ~~~~~vlDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~-~~v~~~~~d~~~-~~~--~~D~v~~  257 (358)
T 1zg3_A          192 EGLESLVDVGGGT-GGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG-------N-ENLNFVGGDMFK-SIP--SADAVLL  257 (358)
T ss_dssp             HTCSEEEEETCTT-SHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC-------C-SSEEEEECCTTT-CCC--CCSEEEE
T ss_pred             cCCCEEEEECCCc-CHHHHHHHHHC-CCCeEEEecc-HHHHhhccc-------C-CCcEEEeCccCC-CCC--CceEEEE
Confidence            4678999999996 66667788765 8999999999 788876543       2 459999999987 433  6999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccC---CeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAP---GALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~Lkp---Gg~lv~r~  231 (318)
                      ...+ .++.++..++++++++.|+|   ||+|++.+
T Consensus       258 ~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          258 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             cccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            6544 45555566999999999999   99988865

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.95  E-value=2.2e-09  Score=100.89  Aligned_cols=96  Identities=16%  Similarity=0.172  Sum_probs=70.1

Q ss_pred             cCCCCEEEEEccCC----ChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEE-EEccccccCcCCCC
Q 021008          119 SRFPTKIAFIGSGP----LPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFF-HTTDIMNVSSALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGp----lp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f-~~gDa~~l~~~l~~  193 (318)
                      ..++.+|||+|||.    +|.+ ..+++...++++|+|+|+++.        +       .+++| +++|+.+++.. +.
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~--------v-------~~v~~~i~gD~~~~~~~-~~  123 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF--------V-------SDADSTLIGDCATVHTA-NK  123 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC--------B-------CSSSEEEESCGGGCCCS-SC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC--------C-------CCCEEEEECccccCCcc-Cc
Confidence            36788999999953    3344 556665434799999999997        1       35889 99999987643 57


Q ss_pred             ccEEEeccccCC------C----hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGM------D----KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm------~----~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||+|+.......      +    .....++++++.++|||||.|++..
T Consensus       124 fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          124 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             EEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999997532110      0    1234589999999999999999854

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.95  E-value=5.9e-09  Score=102.44  Aligned_cols=100  Identities=12%  Similarity=0.120  Sum_probs=76.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD  195 (318)
                      .++.+|||+|||. |.-++.+|+.   +.+|+|+|+|+++++.|+++++. .|+. +++|+++|+.+..    ...+.||
T Consensus       285 ~~~~~VLDlgcG~-G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~-~~~~-~v~f~~~d~~~~l~~~~~~~~~fD  358 (433)
T 1uwv_A          285 QPEDRVLDLFCGM-GNFTLPLATQ---AASVVGVEGVPALVEKGQQNARL-NGLQ-NVTFYHENLEEDVTKQPWAKNGFD  358 (433)
T ss_dssp             CTTCEEEEESCTT-TTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHH-TTCC-SEEEEECCTTSCCSSSGGGTTCCS
T ss_pred             CCCCEEEECCCCC-CHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHH-cCCC-ceEEEECCHHHHhhhhhhhcCCCC
Confidence            5678999999995 6666788863   78999999999999999999987 6774 8999999998732    2334799


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +|+++--    ...-.++++.+. .++|++++.+.
T Consensus       359 ~Vv~dPP----r~g~~~~~~~l~-~~~p~~ivyvs  388 (433)
T 1uwv_A          359 KVLLDPA----RAGAAGVMQQII-KLEPIRIVYVS  388 (433)
T ss_dssp             EEEECCC----TTCCHHHHHHHH-HHCCSEEEEEE
T ss_pred             EEEECCC----CccHHHHHHHHH-hcCCCeEEEEE
Confidence            9998641    111125666665 47898877663

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.94  E-value=2e-10  Score=106.27  Aligned_cols=105  Identities=10%  Similarity=0.088  Sum_probs=71.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE--EccccccCcCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH--TTDIMNVSSALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~--~gDa~~l~~~l~~fD~  196 (318)
                      ..++.+||||||||+++| .++|++    .+|+|||+++ +...+++........+.++.|+  ++|+.+++  ...||+
T Consensus        72 ~~~g~~VLDlGcGtG~~s-~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~  143 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWS-YYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDV  143 (265)
T ss_dssp             CCCCEEEEEESCTTSHHH-HHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSE
T ss_pred             CCCCCEEEEeCcCCCHHH-HHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcE
Confidence            367889999999998776 567752    6899999999 4322221100001122378999  99999986  358999


Q ss_pred             EEeccc--cCCChhHH---HHHHHHHHHhccCCe--EEEEEc
Q 021008          197 VFLAAL--VGMDKDEK---IRVIDHLAKYMAPGA--LLMLRS  231 (318)
Q Consensus       197 V~~aal--vgm~~~~k---~~vl~~l~r~LkpGg--~lv~r~  231 (318)
                      |+.+..  .+....+.   .++++.+.++|||||  .+++..
T Consensus       144 V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          144 IMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             EEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            997632  12111111   248999999999999  998865

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.92  E-value=1.4e-09  Score=106.26  Aligned_cols=104  Identities=17%  Similarity=0.120  Sum_probs=83.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCC-eEEEEccccccCc-CCC-Ccc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTR-MFFHTTDIMNVSS-ALK-DYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~r-i~f~~gDa~~l~~-~l~-~fD  195 (318)
                      .++.+|||++||+++++ +.+|++. .| .+|+++|+|+++++.++++++. .|+.++ ++++++|+.++.. ... .||
T Consensus        51 ~~g~~VLDlfaGtG~~s-l~aa~~~-~ga~~V~avDi~~~av~~~~~N~~~-Ngl~~~~v~v~~~Da~~~l~~~~~~~fD  127 (392)
T 3axs_A           51 GRPVKVADPLSASGIRA-IRFLLET-SCVEKAYANDISSKAIEIMKENFKL-NNIPEDRYEIHGMEANFFLRKEWGFGFD  127 (392)
T ss_dssp             CSCEEEEESSCTTSHHH-HHHHHHC-SCEEEEEEECSCHHHHHHHHHHHHH-TTCCGGGEEEECSCHHHHHHSCCSSCEE
T ss_pred             CCCCEEEECCCcccHHH-HHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHH-hCCCCceEEEEeCCHHHHHHHhhCCCCc
Confidence            35789999999986666 5566642 46 6899999999999999999998 888777 9999999988654 333 799


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+++.. +.    ...+++.+.+.|+|||.|++..
T Consensus       128 ~V~lDP~-g~----~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          128 YVDLDPF-GT----PVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEECCS-SC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCC-cC----HHHHHHHHHHHhCCCCEEEEEe
Confidence            9999873 21    2458889999999999887744

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.92  E-value=1.9e-09  Score=104.60  Aligned_cols=102  Identities=14%  Similarity=0.107  Sum_probs=81.6

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC---------------CCCCCeEEEEcccc
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP---------------DLSTRMFFHTTDIM  185 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~---------------gl~~ri~f~~gDa~  185 (318)
                      ++.+|||+|||+ |.-++.+|++. ++.+|+++|+|+++++.++++++. .               |+.+ ++++++|+.
T Consensus        47 ~~~~VLDl~aGt-G~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~-n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~  122 (378)
T 2dul_A           47 NPKIVLDALSAT-GIRGIRFALET-PAEEVWLNDISEDAYELMKRNVML-NFDGELRESKGRAILKGEKT-IVINHDDAN  122 (378)
T ss_dssp             CCSEEEESSCTT-SHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHH-HCCSCCEECSSEEEEESSSE-EEEEESCHH
T ss_pred             CCCEEEECCCch-hHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHH-hcccccccccccccccCCCc-eEEEcCcHH
Confidence            688999999997 55556777753 567899999999999999999987 5               6644 999999998


Q ss_pred             ccCcCC-CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          186 NVSSAL-KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       186 ~l~~~l-~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++.... ..||+|+++.. +    ....+++...+.++|||.|++..
T Consensus       123 ~~~~~~~~~fD~I~lDP~-~----~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          123 RLMAERHRYFHFIDLDPF-G----SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHHSTTCEEEEEECCS-S----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHhccCCCCEEEeCCC-C----CHHHHHHHHHHhcCCCCEEEEEe
Confidence            864333 37999998763 1    22578899999999999887753

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.89  E-value=4.4e-09  Score=98.50  Aligned_cols=75  Identities=16%  Similarity=0.078  Sum_probs=57.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||++.+| ..++++   +.+|+|||+|+.+++.|++.+.. .|+ .+++|+++|+.+++.  ..||+|+
T Consensus        40 ~~~~~~VLDiG~G~G~lt-~~La~~---~~~v~~vDi~~~~~~~a~~~~~~-~~~-~~v~~~~~D~~~~~~--~~~D~Vv  111 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLT-VKLLPL---AKKVITIDIDSRMISEVKKRCLY-EGY-NNLEVYEGDAIKTVF--PKFDVCT  111 (299)
T ss_dssp             CCTTCEEEEECCTTSTTH-HHHTTT---SSEEEEECSCHHHHHHHHHHHHH-TTC-CCEEC----CCSSCC--CCCSEEE
T ss_pred             CCCcCEEEEEcCcCcHHH-HHHHhc---CCEEEEEECCHHHHHHHHHHHHH-cCC-CceEEEECchhhCCc--ccCCEEE
Confidence            367889999999975555 567753   78999999999999999998876 566 689999999998754  4899998


Q ss_pred             ecc
Q 021008          199 LAA  201 (318)
Q Consensus       199 ~aa  201 (318)
                      ...
T Consensus       112 ~n~  114 (299)
T 2h1r_A          112 ANI  114 (299)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            653

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.88  E-value=4e-09  Score=97.30  Aligned_cols=113  Identities=19%  Similarity=0.173  Sum_probs=80.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhC------CCC-----cEEEEEeCCh---H-----------HHHHHHHHhhcCC---
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINH------LTT-----TCFDNYDIDP---S-----------ANSKALSLVSSDP---  171 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~------~~g-----a~V~gvDid~---~-----------ai~~Ar~~~~~~~---  171 (318)
                      .++.+||+||+| +|++++.+++..      .|+     .+|+++|.+|   +           ..+.|+++.+.-.   
T Consensus        59 ~~~~~ILEiGfG-tG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~  137 (257)
T 2qy6_A           59 HPLFVVAESGFG-TGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL  137 (257)
T ss_dssp             SSEEEEEESCCT-TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred             CCCCEEEEECCC-hHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence            456799999999 799998877642      353     5899999987   3           3446777765300   


Q ss_pred             ------CC---CCCeEEEEccccccCcCC-----CCccEEEeccccCC-Chh-HHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          172 ------DL---STRMFFHTTDIMNVSSAL-----KDYEVVFLAALVGM-DKD-EKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       172 ------gl---~~ri~f~~gDa~~l~~~l-----~~fD~V~~aalvgm-~~~-~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                            ++   ..+++++.||+.+....+     ..||+||++++..- +.+ -..++++.+++.|+|||+|+.-++.
T Consensus       138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa  215 (257)
T 2qy6_A          138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA  215 (257)
T ss_dssp             SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCB
T ss_pred             cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCC
Confidence                  12   246889999998843232     26999999986521 111 1467999999999999999975543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.86  E-value=3.5e-09  Score=99.82  Aligned_cols=104  Identities=9%  Similarity=0.056  Sum_probs=71.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeC----ChHHHHHHHHHhhcCCCCCCCeEEEEc-cccccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDI----DPSANSKALSLVSSDPDLSTRMFFHTT-DIMNVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDi----d~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~l~~~l~~f  194 (318)
                      .++.+||||||||+++| ..+|++    .+|+|||+    ++..++.+  ..+. .+ ..+++|+++ |+.+++.  ..|
T Consensus        81 ~~g~~VLDlGcG~G~~s-~~la~~----~~V~gvD~~~~~~~~~~~~~--~~~~-~~-~~~v~~~~~~D~~~l~~--~~f  149 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWS-YYCGGL----KNVREVKGLTKGGPGHEEPI--PMST-YG-WNLVRLQSGVDVFFIPP--ERC  149 (305)
T ss_dssp             CCCEEEEEETCTTSHHH-HHHHTS----TTEEEEEEECCCSTTSCCCC--CCCS-TT-GGGEEEECSCCTTTSCC--CCC
T ss_pred             CCCCEEEEEcCCCCHHH-HHHHhc----CCEEEEeccccCchhHHHHH--Hhhh-cC-CCCeEEEeccccccCCc--CCC
Confidence            66789999999998776 567763    58999999    55443211  1111 22 257999999 9988753  489


Q ss_pred             cEEEecccc--CCChhHHH---HHHHHHHHhccCCeEEEEEcCCC
Q 021008          195 EVVFLAALV--GMDKDEKI---RVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       195 D~V~~aalv--gm~~~~k~---~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      |+|+.+...  +....+..   +++..+.+.|||||.+++....+
T Consensus       150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            999976432  21112222   58899999999999999866444

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.86  E-value=1.4e-09  Score=102.29  Aligned_cols=97  Identities=12%  Similarity=-0.008  Sum_probs=66.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEE-EEccccccCc---CCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFF-HTTDIMNVSS---ALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f-~~gDa~~l~~---~l~~fD  195 (318)
                      .++++|||||||++++| .+++++  ...+|+|||+++.+++++.+.-       .++.. ...|+..++.   ....||
T Consensus        84 ~~g~~vLDiGcGTG~~t-~~L~~~--ga~~V~aVDvs~~mL~~a~r~~-------~rv~~~~~~ni~~l~~~~l~~~~fD  153 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFT-DVMLQN--GAKLVYAVDVGTNQLVWKLRQD-------DRVRSMEQYNFRYAEPVDFTEGLPS  153 (291)
T ss_dssp             CTTCEEEEETCTTSHHH-HHHHHT--TCSEEEEECSSSSCSCHHHHTC-------TTEEEECSCCGGGCCGGGCTTCCCS
T ss_pred             ccccEEEecCCCccHHH-HHHHhC--CCCEEEEEECCHHHHHHHHHhC-------cccceecccCceecchhhCCCCCCC
Confidence            46789999999987777 466653  3459999999999999864421       23322 2234443322   112499


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +|+++... ++   -..++.+++++|+|||.+++-
T Consensus       154 ~v~~d~sf-~s---l~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          154 FASIDVSF-IS---LNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             EEEECCSS-SC---GGGTHHHHHHHSCTTCEEEEE
T ss_pred             EEEEEeeH-hh---HHHHHHHHHHHcCcCCEEEEE
Confidence            88875422 12   267999999999999998874

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.78  E-value=6.1e-09  Score=102.31  Aligned_cols=75  Identities=13%  Similarity=0.039  Sum_probs=62.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC--CCCCCeEEEEccccccCcC--CCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP--DLSTRMFFHTTDIMNVSSA--LKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~--gl~~ri~f~~gDa~~l~~~--l~~fD  195 (318)
                      .++++|||+||| .|..++.+|+   .+.+|++||+|+.+++.|+++++. .  |+ ++++|+++|+.+....  .+.||
T Consensus        92 ~~g~~VLDLgcG-~G~~al~LA~---~g~~V~~VD~s~~~l~~Ar~N~~~-~~~gl-~~i~~i~~Da~~~L~~~~~~~fD  165 (410)
T 3ll7_A           92 REGTKVVDLTGG-LGIDFIALMS---KASQGIYIERNDETAVAARHNIPL-LLNEG-KDVNILTGDFKEYLPLIKTFHPD  165 (410)
T ss_dssp             CTTCEEEESSCS-SSHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHH-HSCTT-CEEEEEESCGGGSHHHHHHHCCS
T ss_pred             CCCCEEEEeCCC-chHHHHHHHh---cCCEEEEEECCHHHHHHHHHhHHH-hccCC-CcEEEEECcHHHhhhhccCCCce
Confidence            358999999999 5777788886   378999999999999999999987 6  77 7899999999984222  24899


Q ss_pred             EEEec
Q 021008          196 VVFLA  200 (318)
Q Consensus       196 ~V~~a  200 (318)
                      +||++
T Consensus       166 vV~lD  170 (410)
T 3ll7_A          166 YIYVD  170 (410)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99985

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.76  E-value=2.2e-08  Score=97.34  Aligned_cols=109  Identities=8%  Similarity=0.004  Sum_probs=80.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC------CCCCeEEEEccccccCc----
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD------LSTRMFFHTTDIMNVSS----  189 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g------l~~ri~f~~gDa~~l~~----  189 (318)
                      .+|+|||.||.|. |.++..+.+ | +..+|+.|||||++++.|++.+....+      -..|++++.+|+.+...    
T Consensus       204 ~~pkrVLIIGgGd-G~~~revlk-h-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~  280 (381)
T 3c6k_A          204 YTGKDVLILGGGD-GGILCEIVK-L-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK  280 (381)
T ss_dssp             CTTCEEEEEECTT-CHHHHHHHT-T-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCc-HHHHHHHHh-c-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh
Confidence            5689999999995 555555554 5 568999999999999999998753111      13579999999986432    


Q ss_pred             CCCCccEEEecccc--------CCC-hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          190 ALKDYEVVFLAALV--------GMD-KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalv--------gm~-~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+.||+|+++..-        +.. ..-..++++.+++.|+|||+++...
T Consensus       281 ~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          281 EGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             HTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            33479999998542        111 1224678999999999999999864

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.74  E-value=7.3e-08  Score=90.62  Aligned_cols=74  Identities=23%  Similarity=0.084  Sum_probs=60.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||++.+| ..|+++   +.+|++||+|+++++.+++.+..    ..+++++++|+.+++.....||.|+
T Consensus        48 ~~~~~~VLEIG~G~G~lT-~~La~~---~~~V~aVEid~~li~~a~~~~~~----~~~v~vi~gD~l~~~~~~~~fD~Iv  119 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILT-EELAKN---AKKVYVIEIDKSLEPYANKLKEL----YNNIEIIWGDALKVDLNKLDFNKVV  119 (295)
T ss_dssp             CCTTCEEEEECCTTSHHH-HHHHHH---SSEEEEEESCGGGHHHHHHHHHH----CSSEEEEESCTTTSCGGGSCCSEEE
T ss_pred             CCCcCEEEEECCCchHHH-HHHHhc---CCEEEEEECCHHHHHHHHHHhcc----CCCeEEEECchhhCCcccCCccEEE
Confidence            367889999999975555 567764   78999999999999999998764    2579999999998765545799888


Q ss_pred             ec
Q 021008          199 LA  200 (318)
Q Consensus       199 ~a  200 (318)
                      ..
T Consensus       120 ~N  121 (295)
T 3gru_A          120 AN  121 (295)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.74  E-value=1.5e-08  Score=95.47  Aligned_cols=78  Identities=8%  Similarity=-0.020  Sum_probs=63.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-----CCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-----ALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-----~l~~  193 (318)
                      ..++.+|||+|||+++.| +.+++++ ++++|+|+|+|+++++.|++.++. .|  .+++|+++|..+++.     ....
T Consensus        24 ~~~g~~vLD~g~G~G~~s-~~la~~~-~~~~VigvD~d~~al~~A~~~~~~-~g--~~v~~v~~d~~~l~~~l~~~g~~~   98 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHS-RAILEHC-PGCRIIGIDVDSEVLRIAEEKLKE-FS--DRVSLFKVSYREADFLLKTLGIEK   98 (301)
T ss_dssp             CCTTCEEEETTCTTSHHH-HHHHHHC-TTCEEEEEESCHHHHHHHHHHTGG-GT--TTEEEEECCGGGHHHHHHHTTCSC
T ss_pred             CCCCCEEEEEeCCcCHHH-HHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh-cC--CcEEEEECCHHHHHHHHHhcCCCC
Confidence            357789999999976665 5677654 689999999999999999999887 55  799999999988752     1247


Q ss_pred             ccEEEecc
Q 021008          194 YEVVFLAA  201 (318)
Q Consensus       194 fD~V~~aa  201 (318)
                      ||.|+++.
T Consensus        99 ~D~Vl~D~  106 (301)
T 1m6y_A           99 VDGILMDL  106 (301)
T ss_dssp             EEEEEEEC
T ss_pred             CCEEEEcC
Confidence            99999775

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.73  E-value=8.6e-08  Score=93.41  Aligned_cols=110  Identities=12%  Similarity=0.037  Sum_probs=80.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHh---CCCC----------------------------------cEEEEEeCChHHHHH
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAIN---HLTT----------------------------------TCFDNYDIDPSANSK  162 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~---~~~g----------------------------------a~V~gvDid~~ai~~  162 (318)
                      .++.+|+|.|||.+.+. +-.|..   ..||                                  .+|+|+|+|+.+++.
T Consensus       200 ~~~~~vlDp~CGSGt~~-ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~  278 (393)
T 3k0b_A          200 HPDRPFYDPVCGSGTIP-IEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI  278 (393)
T ss_dssp             CTTSCEEETTCTTSHHH-HHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHH-HHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence            67789999999975443 444432   1122                                  579999999999999


Q ss_pred             HHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCCCh---hHHHHHHHHHHHhccC--CeEEEEEcC
Q 021008          163 ALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDK---DEKIRVIDHLAKYMAP--GALLMLRSA  232 (318)
Q Consensus       163 Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~~---~~k~~vl~~l~r~Lkp--Gg~lv~r~~  232 (318)
                      |++++.. .|+.++++|+++|+.+++.. .+||+|++.---|...   ++-.+++..+.+.+|+  |+.+.+-.+
T Consensus       279 Ar~Na~~-~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          279 AKQNAVE-AGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS  351 (393)
T ss_dssp             HHHHHHH-TTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             HHHHHHH-cCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9999998 89988999999999998654 4899999763222111   3445567777777776  777655443

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.72  E-value=1.6e-07  Score=91.34  Aligned_cols=110  Identities=13%  Similarity=0.068  Sum_probs=82.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHH---hCCCC----------------------------------cEEEEEeCChHHHHH
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAI---NHLTT----------------------------------TCFDNYDIDPSANSK  162 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~---~~~~g----------------------------------a~V~gvDid~~ai~~  162 (318)
                      .++.+|+|.+||.+.+. +-.|.   ...||                                  .+|+|+|+|+.+++.
T Consensus       193 ~~~~~llDp~CGSGt~l-IEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~  271 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFC-IEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI  271 (384)
T ss_dssp             CTTSCEEETTCTTSHHH-HHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHH-HHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence            67789999999975443 33332   21122                                  569999999999999


Q ss_pred             HHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccC--C-ChhHHHHHHHHHHHhccC--CeEEEEEcC
Q 021008          163 ALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVG--M-DKDEKIRVIDHLAKYMAP--GALLMLRSA  232 (318)
Q Consensus       163 Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvg--m-~~~~k~~vl~~l~r~Lkp--Gg~lv~r~~  232 (318)
                      |+++++. .|+.++++|+++|+.+++.. .+||+|+..---|  + +.++..+++.++.+.||+  |+.+.+-.+
T Consensus       272 Ar~Na~~-~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          272 ARKNARE-VGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             HHHHHHH-TTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred             HHHHHHH-cCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence            9999998 89999999999999998654 4899999763211  1 335667788888888877  777665553

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.70  E-value=3.3e-08  Score=93.73  Aligned_cols=109  Identities=19%  Similarity=0.172  Sum_probs=80.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCC-----cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-----TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-----a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~f  194 (318)
                      .++.+|||+|||+++++. .+++.. +.     .+|+|+|+|+.+++.|+..+.. .|+  ++.++++|..+.. ....|
T Consensus       129 ~~~~~VlDp~cGsG~~l~-~~~~~~-~~~~~~~~~v~GiDi~~~~~~~a~~n~~~-~g~--~~~i~~~D~l~~~-~~~~f  202 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLT-TVINQL-ELKGDVDVHASGVDVDDLLISLALVGADL-QRQ--KMTLLHQDGLANL-LVDPV  202 (344)
T ss_dssp             CSEEEEEETTCTTSHHHH-HHHHHH-HTTSSCEEEEEEEESCHHHHHHHHHHHHH-HTC--CCEEEESCTTSCC-CCCCE
T ss_pred             CCCCEEEeCCCCccHHHH-HHHHHH-HHhcCCCceEEEEECCHHHHHHHHHHHHh-CCC--CceEEECCCCCcc-ccCCc
Confidence            466899999999866664 455442 32     8999999999999999998876 555  6899999988742 33589


Q ss_pred             cEEEeccccCC-ChhH----------------HHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          195 EVVFLAALVGM-DKDE----------------KIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       195 D~V~~aalvgm-~~~~----------------k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      |+|+..--.+. +..+                ...+++++.+.|+|||++++-.+++
T Consensus       203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            99986532111 1111                1368999999999999998877655

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.69  E-value=4.4e-09  Score=96.90  Aligned_cols=77  Identities=17%  Similarity=0.165  Sum_probs=63.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh-------HHHHHHHHHhhcCCCCCCCeEEEEccccccCc--C
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP-------SANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--A  190 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~-------~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~  190 (318)
                      .++.+|||+|||. |..++.+|+.   |++|+++|+|+       ++++.|+++++. .|+.++++|+++|+.++..  .
T Consensus        82 ~~~~~VLDlgcG~-G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~-~~~~~ri~~~~~d~~~~l~~~~  156 (258)
T 2r6z_A           82 TAHPTVWDATAGL-GRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPET-QDTAARINLHFGNAAEQMPALV  156 (258)
T ss_dssp             GGCCCEEETTCTT-CHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHH-HHHHTTEEEEESCHHHHHHHHH
T ss_pred             CCcCeEEEeeCcc-CHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHh-hCCccCeEEEECCHHHHHHhhh
Confidence            4568999999995 6777888873   78999999999       999999988776 5666789999999987522  1


Q ss_pred             C--CCccEEEecc
Q 021008          191 L--KDYEVVFLAA  201 (318)
Q Consensus       191 l--~~fD~V~~aa  201 (318)
                      .  ++||+|+++-
T Consensus       157 ~~~~~fD~V~~dP  169 (258)
T 2r6z_A          157 KTQGKPDIVYLDP  169 (258)
T ss_dssp             HHHCCCSEEEECC
T ss_pred             ccCCCccEEEECC
Confidence            1  4799999864

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.65  E-value=3.5e-07  Score=82.95  Aligned_cols=70  Identities=17%  Similarity=0.175  Sum_probs=55.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC-CccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK-DYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~-~fD~V  197 (318)
                      .++.+|||||||++.+| ..++++   +.+|+|||+|+++++.+++.+..   . .+++++++|+.+++...+ .|++|
T Consensus        29 ~~~~~VLDiG~G~G~lt-~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~---~-~~v~~~~~D~~~~~~~~~~~~~vv   99 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFT-LELVQR---CNFVTAIEIDHKLCKTTENKLVD---H-DNFQVLNKDILQFKFPKNQSYKIF   99 (244)
T ss_dssp             CTTCEEEEECCTTSHHH-HHHHHH---SSEEEEECSCHHHHHHHHHHTTT---C-CSEEEECCCGGGCCCCSSCCCEEE
T ss_pred             CCCCEEEEEeCCchHHH-HHHHHc---CCeEEEEECCHHHHHHHHHhhcc---C-CCeEEEEChHHhCCcccCCCeEEE
Confidence            57789999999975555 567764   68999999999999999998764   2 689999999999865432 45433

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.64  E-value=1.5e-07  Score=91.35  Aligned_cols=109  Identities=16%  Similarity=0.114  Sum_probs=80.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHh---CCC----------------------------------CcEEEEEeCChHHHHH
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAIN---HLT----------------------------------TTCFDNYDIDPSANSK  162 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~---~~~----------------------------------ga~V~gvDid~~ai~~  162 (318)
                      .++.+|||.|||.+.+. +-+|..   ..|                                  ..+|+|+|+|+.+++.
T Consensus       194 ~~~~~vlDp~CGSGt~l-ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTIL-IEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CTTSCEEETTCTTCHHH-HHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHH-HHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            57789999999975444 444432   111                                  2679999999999999


Q ss_pred             HHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCC---ChhHHHHHHHHHHHhccC--CeEEEEEc
Q 021008          163 ALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGM---DKDEKIRVIDHLAKYMAP--GALLMLRS  231 (318)
Q Consensus       163 Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm---~~~~k~~vl~~l~r~Lkp--Gg~lv~r~  231 (318)
                      |++++.. .|+.++++|.++|+.+++.. .+||+|+..---+.   +.++-.+++.++.+.|++  |+.+.+-.
T Consensus       273 Ar~Na~~-~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  344 (385)
T 3ldu_A          273 ARENAEI-AGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT  344 (385)
T ss_dssp             HHHHHHH-HTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred             HHHHHHH-cCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence            9999998 88888999999999998653 48999997532221   124456678888888877  77665544

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.63  E-value=5e-08  Score=93.91  Aligned_cols=101  Identities=14%  Similarity=0.106  Sum_probs=73.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||+|||+++++ +.+++++.++.+|+|+|+|+.+++.|           .+++++++|..+... .+.||+|+.
T Consensus        38 ~~~~~vLD~gcGtG~~~-~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~~~~D~~~~~~-~~~fD~Ii~  104 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFL-RAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILADFLLWEP-GEAFDLILG  104 (421)
T ss_dssp             CTTCEEEEETCTTCHHH-HHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEESCGGGCCC-SSCEEEEEE
T ss_pred             CCCCEEEECCCCChHHH-HHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcEEeCChhhcCc-cCCCCEEEE
Confidence            45679999999975554 56776543578999999999987655           578999999988643 358999986


Q ss_pred             cc-cc---C-------CChhHH-----------------HHHHHHHHHhccCCeEEEEEcCC
Q 021008          200 AA-LV---G-------MDKDEK-----------------IRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       200 aa-lv---g-------m~~~~k-----------------~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      .- ..   .       ++.+.+                 ..+++.+.+.|+|||.+++-...
T Consensus       105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A          105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence            31 00   0       222222                 26799999999999998776543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.61  E-value=4e-09  Score=95.32  Aligned_cols=103  Identities=16%  Similarity=0.115  Sum_probs=70.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~  198 (318)
                      .++.+|||||||++.+| ..++++   +.+|+|||+|+++++.|++.+.    ...+++++++|+.+++... ++| .|+
T Consensus        28 ~~~~~VLDiG~G~G~~~-~~l~~~---~~~v~~id~~~~~~~~a~~~~~----~~~~v~~~~~D~~~~~~~~~~~f-~vv   98 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLT-TKLAKI---SKQVTSIELDSHLFNLSSEKLK----LNTRVTLIHQDILQFQFPNKQRY-KIV   98 (245)
T ss_dssp             CSSEEEEECSCCCSSCS-HHHHHH---SSEEEESSSSCSSSSSSSCTTT----TCSEEEECCSCCTTTTCCCSSEE-EEE
T ss_pred             CCCCEEEEEeCCCCHHH-HHHHHh---CCeEEEEECCHHHHHHHHHHhc----cCCceEEEECChhhcCcccCCCc-EEE
Confidence            57789999999976666 567764   6899999999999999887654    2368999999999986543 467 333


Q ss_pred             eccccCCChhHHHH----------HH----HHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIR----------VI----DHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~----------vl----~~l~r~LkpGg~lv~r~  231 (318)
                      ..---......-..          ++    +.+.+.|+|||.+.+-.
T Consensus        99 ~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           99 GNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             EECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             EeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            22100001111112          23    55789999999876543

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.60  E-value=1.5e-08  Score=93.66  Aligned_cols=80  Identities=15%  Similarity=0.161  Sum_probs=60.6

Q ss_pred             CCC--CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc---C---CC-CCCCeEEEEccccccCcC
Q 021008          120 RFP--TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS---D---PD-LSTRMFFHTTDIMNVSSA  190 (318)
Q Consensus       120 ~~~--~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~---~---~g-l~~ri~f~~gDa~~l~~~  190 (318)
                      .++  .+|||+||| .|..++.+|++   |++|++||+++.+.+.+++.++.   .   .+ +..+++++++|+.++...
T Consensus        85 ~~g~~~~VLDl~~G-~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~  160 (258)
T 2oyr_A           85 KGDYLPDVVDATAG-LGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD  160 (258)
T ss_dssp             BTTBCCCEEETTCT-TCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT
T ss_pred             cCCCCCEEEEcCCc-CCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh
Confidence            455  899999999 68888899985   78999999999876666665442   0   12 336899999999985433


Q ss_pred             C-CCccEEEecccc
Q 021008          191 L-KDYEVVFLAALV  203 (318)
Q Consensus       191 l-~~fD~V~~aalv  203 (318)
                      . ..||+||++-.-
T Consensus       161 ~~~~fDvV~lDP~y  174 (258)
T 2oyr_A          161 ITPRPQVVYLDPMF  174 (258)
T ss_dssp             CSSCCSEEEECCCC
T ss_pred             CcccCCEEEEcCCC
Confidence            3 379999998644

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.56  E-value=2.8e-07  Score=85.60  Aligned_cols=70  Identities=11%  Similarity=-0.042  Sum_probs=55.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V  197 (318)
                      ..++ +|||||||++.+| ..|+++   +.+|++||+|+++++.+++.+..     .+++++++|+.+++... ..||.|
T Consensus        45 ~~~~-~VLEIG~G~G~lt-~~L~~~---~~~V~avEid~~~~~~l~~~~~~-----~~v~vi~~D~l~~~~~~~~~~~~i  114 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALT-RALLEA---GAEVTAIEKDLRLRPVLEETLSG-----LPVRLVFQDALLYPWEEVPQGSLL  114 (271)
T ss_dssp             CCCS-CEEEECCTTSHHH-HHHHHT---TCCEEEEESCGGGHHHHHHHTTT-----SSEEEEESCGGGSCGGGSCTTEEE
T ss_pred             CCCC-eEEEEeCchHHHH-HHHHHc---CCEEEEEECCHHHHHHHHHhcCC-----CCEEEEECChhhCChhhccCccEE
Confidence            3566 9999999976665 567763   68999999999999999987753     68999999999876542 267776


Q ss_pred             E
Q 021008          198 F  198 (318)
Q Consensus       198 ~  198 (318)
                      +
T Consensus       115 v  115 (271)
T 3fut_A          115 V  115 (271)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.50  E-value=2.1e-07  Score=85.52  Aligned_cols=70  Identities=16%  Similarity=0.105  Sum_probs=55.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC----CCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL----KDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l----~~f  194 (318)
                      ..++.+|||||||++.+| ..|+++   +.+|++||+|+++++.+++.+..    ..+++++++|+.+++...    +.|
T Consensus        27 ~~~~~~VLEIG~G~G~lt-~~La~~---~~~V~avEid~~~~~~~~~~~~~----~~~v~~i~~D~~~~~~~~~~~~~~~   98 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALT-DYLLTE---CDNLALVEIDRDLVAFLQKKYNQ----QKNITIYQNDALQFDFSSVKTDKPL   98 (255)
T ss_dssp             CCTTCEEEEECCTTTTTH-HHHTTT---SSEEEEEECCHHHHHHHHHHHTT----CTTEEEEESCTTTCCGGGSCCSSCE
T ss_pred             CCCcCEEEEEcccccHHH-HHHHHh---CCEEEEEECCHHHHHHHHHHHhh----CCCcEEEEcchHhCCHHHhccCCCe
Confidence            367889999999975555 567753   68999999999999999998764    368999999999875421    357


Q ss_pred             cE
Q 021008          195 EV  196 (318)
Q Consensus       195 D~  196 (318)
                      |+
T Consensus        99 ~v  100 (255)
T 3tqs_A           99 RV  100 (255)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.45  E-value=2.7e-07  Score=90.73  Aligned_cols=112  Identities=10%  Similarity=0.065  Sum_probs=80.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhC------------CCCcEEEEEeCChHHHHHHHHHhhcCCCCCC-CeEEEEccccc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINH------------LTTTCFDNYDIDPSANSKALSLVSSDPDLST-RMFFHTTDIMN  186 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~------------~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~-ri~f~~gDa~~  186 (318)
                      .++.+|+|.|||.+++.. .+++..            .++.+|+|+|+|+.+++.|+..... .|+.. ++.++++|...
T Consensus       170 ~~~~~VlDpacGsG~fl~-~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l-~g~~~~~~~i~~gD~l~  247 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLL-TAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-HGIGTDRSPIVCEDSLE  247 (445)
T ss_dssp             CTTCCEEETTCTTCHHHH-HHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-TTCCSSCCSEEECCTTT
T ss_pred             CCCCEEeccCCCcchHHH-HHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH-hCCCcCCCCEeeCCCCC
Confidence            566899999999877654 444421            0356899999999999999988776 56643 78899999987


Q ss_pred             cCcCCCCccEEEecc-ccCCChh---------------HHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          187 VSSALKDYEVVFLAA-LVGMDKD---------------EKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       187 l~~~l~~fD~V~~aa-lvgm~~~---------------~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      .+.. ..||+|+..- +.+....               .-..+++++.+.|+|||++++-.++|
T Consensus       248 ~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~  310 (445)
T 2okc_A          248 KEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  310 (445)
T ss_dssp             SCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             Cccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence            6532 3899998542 1111000               12478999999999999987766443

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.39  E-value=9.6e-07  Score=80.69  Aligned_cols=99  Identities=14%  Similarity=0.112  Sum_probs=64.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||||||+ |.-+..++++  +..+|++||+|+.+++.+++. .     ..+++++++|+.+++......+.++
T Consensus        29 ~~~~~~VLDiG~G~-G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~-~-----~~~v~~i~~D~~~~~~~~~~~~~~v   99 (249)
T 3ftd_A           29 IEEGNTVVEVGGGT-GNLTKVLLQH--PLKKLYVIELDREMVENLKSI-G-----DERLEVINEDASKFPFCSLGKELKV   99 (249)
T ss_dssp             CCTTCEEEEEESCH-HHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS-C-----CTTEEEECSCTTTCCGGGSCSSEEE
T ss_pred             CCCcCEEEEEcCch-HHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc-c-----CCCeEEEEcchhhCChhHccCCcEE
Confidence            35788999999996 5555667753  358999999999999999876 2     2689999999998764321113445


Q ss_pred             eccccCCChhHHHHHHHHHHHhc--cCCeEEEE
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYM--APGALLML  229 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~L--kpGg~lv~  229 (318)
                      ++.+- .  .--..++.++.+..  -+.+++++
T Consensus       100 v~NlP-y--~i~~~il~~ll~~~~~~~~~~~m~  129 (249)
T 3ftd_A          100 VGNLP-Y--NVASLIIENTVYNKDCVPLAVFMV  129 (249)
T ss_dssp             EEECC-T--TTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             EEECc-h--hccHHHHHHHHhcCCCCceEEEEE
Confidence            45431 1  22334454444432  34455555

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.37  E-value=1.5e-06  Score=89.51  Aligned_cols=105  Identities=11%  Similarity=0.144  Sum_probs=74.9

Q ss_pred             CCCEEEEEccCCChHHHHHHH--HhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLA--INHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA--~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ....|++||||.+|++..++.  ++.....+|.+||-+|-| ..|++++++ -|++++|+++.||+.++.-+ .+.|+|+
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A-~~a~~~v~~-N~~~dkVtVI~gd~eev~LP-EKVDIIV  433 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA-VVTLENWQF-EEWGSQVTVVSSDMREWVAP-EKADIIV  433 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH-HHHHHHHHH-HTTGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH-HHHHHHHHh-ccCCCeEEEEeCcceeccCC-cccCEEE
Confidence            446899999999988544332  332223478999999854 578888887 78999999999999987322 3899998


Q ss_pred             ecccc-CCChhHHHHHHHHHHHhccCCeEEE
Q 021008          199 LAALV-GMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       199 ~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      ..-+= .+.-|--..++...-|.|||||+++
T Consensus       434 SEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          434 SELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            44211 0011333468888899999999864

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.34  E-value=1.6e-06  Score=90.15  Aligned_cols=104  Identities=13%  Similarity=0.202  Sum_probs=76.1

Q ss_pred             CCEEEEEccCCChHHHH--HHHHhCC---------CCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC
Q 021008          122 PTKIAFIGSGPLPLTSI--VLAINHL---------TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA  190 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai--~LA~~~~---------~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~  190 (318)
                      .+.||+||||.++++..  ..++...         ...+|++||.|+.++...++...  -|++++|+++.+|+.++...
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~--Ng~~d~VtVI~gd~eev~lp  487 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV--RTWKRRVTIIESDMRSLPGI  487 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH--HTTTTCSEEEESCGGGHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh--cCCCCeEEEEeCchhhcccc
Confidence            56899999999999843  3332110         13499999999988876666554  47889999999999987431


Q ss_pred             -----CCCccEEEeccccCC--ChhHHHHHHHHHHHhccCCeEEE
Q 021008          191 -----LKDYEVVFLAALVGM--DKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       191 -----l~~fD~V~~aalvgm--~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                           ....|+|+..-+ |-  +-+--.+.|..+.+.|||||+++
T Consensus       488 ~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          488 AKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence                 358999985532 21  33445678888899999999864

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.27  E-value=4.3e-06  Score=87.10  Aligned_cols=83  Identities=19%  Similarity=0.193  Sum_probs=60.6

Q ss_pred             cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--CCccEEEeccccCC---ChhHHHHHHHH---HHH
Q 021008          148 TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--KDYEVVFLAALVGM---DKDEKIRVIDH---LAK  219 (318)
Q Consensus       148 a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--~~fD~V~~aalvgm---~~~~k~~vl~~---l~r  219 (318)
                      .+|+|+|+|+.+++.|++++.. .|+.+.++|.++|+.++....  ++||+|+..=--|.   +.++-..++..   +.+
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~-agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk  335 (703)
T 3v97_A          257 SHFYGSDSDARVIQRARTNARL-AGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK  335 (703)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHH-TTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred             ccEEEEECCHHHHHHHHHHHHH-cCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence            6899999999999999999999 999999999999999874332  37999987521121   12233344444   445


Q ss_pred             hccCCeEEEEEc
Q 021008          220 YMAPGALLMLRS  231 (318)
Q Consensus       220 ~LkpGg~lv~r~  231 (318)
                      .+.|||.+.+-.
T Consensus       336 ~~~~g~~~~ilt  347 (703)
T 3v97_A          336 NQFGGWNLSLFS  347 (703)
T ss_dssp             HHCTTCEEEEEE
T ss_pred             hhCCCCeEEEEe
Confidence            556899887654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.27  E-value=1.5e-06  Score=83.96  Aligned_cols=110  Identities=12%  Similarity=0.073  Sum_probs=84.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC-----CCCeEEEEccccccCcCC-C
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL-----STRMFFHTTDIMNVSSAL-K  192 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl-----~~ri~f~~gDa~~l~~~l-~  192 (318)
                      +.++.+|||.-+||+|-|+ .||+. ..+..|+++|+|+..++..++++++ .|.     +.++.+...|+..++... +
T Consensus       146 ~~pg~~VLD~CAaPGGKT~-~la~~-~~~~~l~A~D~~~~R~~~l~~~l~r-~~~~~~~~~~~v~v~~~D~~~~~~~~~~  222 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTL-ALLQT-GCCRNLAANDLSPSRIARLQKILHS-YVPEEIRDGNQVRVTSWDGRKWGELEGD  222 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHH-HHHHT-TCEEEEEEECSCHHHHHHHHHHHHH-HSCTTTTTSSSEEEECCCGGGHHHHSTT
T ss_pred             CCCCCEEEEecCCccHHHH-HHHHh-cCCCcEEEEcCCHHHHHHHHHHHHH-hhhhhhccCCceEEEeCchhhcchhccc
Confidence            4788999999999999986 45553 4567899999999999999888876 443     368999999998764322 3


Q ss_pred             CccEEEecccc-C----C---C--------h-------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALV-G----M---D--------K-------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalv-g----m---~--------~-------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .||.|++++-+ |    +   +        .       .--.++|++..+.+||||+||+-.
T Consensus       223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            79999988743 1    1   0        0       012468889999999999999865

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.24  E-value=1.5e-06  Score=80.90  Aligned_cols=64  Identities=14%  Similarity=0.129  Sum_probs=50.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCC-CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLT-TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS  189 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~-ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~  189 (318)
                      ..++.+|||||||++.+|. .|+++... +++|++||+|+++++.+++.. .     .+++++++|+.+++.
T Consensus        40 ~~~~~~VLEIG~G~G~lt~-~La~~~~~~~~~V~avDid~~~l~~a~~~~-~-----~~v~~i~~D~~~~~~  104 (279)
T 3uzu_A           40 PERGERMVEIGPGLGALTG-PVIARLATPGSPLHAVELDRDLIGRLEQRF-G-----ELLELHAGDALTFDF  104 (279)
T ss_dssp             CCTTCEEEEECCTTSTTHH-HHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G-----GGEEEEESCGGGCCG
T ss_pred             CCCcCEEEEEccccHHHHH-HHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C-----CCcEEEECChhcCCh
Confidence            3678999999999766664 56654212 244999999999999999874 2     679999999998764

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.21  E-value=1.2e-06  Score=80.35  Aligned_cols=61  Identities=13%  Similarity=0.078  Sum_probs=49.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcE--EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC--FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS  189 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~--V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~  189 (318)
                      ..++.+|||||||++.+|.  +++    +.+  |++||+|+++++.+++....   . .+++++++|+.+++.
T Consensus        19 ~~~~~~VLEIG~G~G~lt~--l~~----~~~~~v~avEid~~~~~~a~~~~~~---~-~~v~~i~~D~~~~~~   81 (252)
T 1qyr_A           19 PQKGQAMVEIGPGLAALTE--PVG----ERLDQLTVIELDRDLAARLQTHPFL---G-PKLTIYQQDAMTFNF   81 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHH--HHH----TTCSCEEEECCCHHHHHHHHTCTTT---G-GGEEEECSCGGGCCH
T ss_pred             CCCcCEEEEECCCCcHHHH--hhh----CCCCeEEEEECCHHHHHHHHHHhcc---C-CceEEEECchhhCCH
Confidence            3677899999999877776  654    345  99999999999999987654   2 589999999998753

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.12  E-value=2.8e-06  Score=72.44  Aligned_cols=87  Identities=17%  Similarity=0.228  Sum_probs=65.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~  198 (318)
                      .++.||++||||+++--|..||++  .|..|+++||+|.+++                 |++.|+.+...+. ..||+||
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~--~g~~V~atDInp~Av~-----------------~v~dDiF~P~~~~Y~~~DLIY   94 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKH--SKVDLVLTDIKPSHGG-----------------IVRDDITSPRMEIYRGAALIY   94 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHH--SCCEEEEECSSCSSTT-----------------EECCCSSSCCHHHHTTEEEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHh--CCCeEEEEECCccccc-----------------eEEccCCCCcccccCCcCEEE
Confidence            467899999999866688899974  4999999999997765                 8889998743322 4899998


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .--    +..+-...+.++++..  |+-++++-
T Consensus        95 sir----PP~El~~~i~~lA~~v--~adliI~p  121 (153)
T 2k4m_A           95 SIR----PPAEIHSSLMRVADAV--GARLIIKP  121 (153)
T ss_dssp             EES----CCTTTHHHHHHHHHHH--TCEEEEEC
T ss_pred             EcC----CCHHHHHHHHHHHHHc--CCCEEEEc
Confidence            554    3456666777777654  66777765

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.06  E-value=1.1e-05  Score=81.57  Aligned_cols=113  Identities=11%  Similarity=0.098  Sum_probs=79.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhC---C--------------CCcEEEEEeCChHHHHHHHHHhhcCCCCCC----CeE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINH---L--------------TTTCFDNYDIDPSANSKALSLVSSDPDLST----RMF  178 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~---~--------------~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~----ri~  178 (318)
                      .++.+|+|.|||.+++... +++..   .              ....|+|+|+|+.+++.|+..... .|...    ++.
T Consensus       168 ~~~~~VlDPaCGSG~fLi~-a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l-~gi~~~~~~~~~  245 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIE-ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL-HDIEGNLDHGGA  245 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHH-HHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT-TTCCCBGGGTBS
T ss_pred             CCCCeEecCCcccchHHHH-HHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH-hCCCccccccCC
Confidence            5668999999998777643 33321   1              124799999999999999988765 56654    388


Q ss_pred             EEEccccccC-cCCCCccEEEeccccCCC-------------hhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          179 FHTTDIMNVS-SALKDYEVVFLAALVGMD-------------KDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       179 f~~gDa~~l~-~~l~~fD~V~~aalvgm~-------------~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ++++|....+ .....||+|+..--.+..             ......+++++.+.|+|||++++-.++|
T Consensus       246 I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          246 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             eEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            9999987643 234589999854211100             1123479999999999999987766443

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.93  E-value=1.8e-05  Score=73.96  Aligned_cols=85  Identities=13%  Similarity=0.046  Sum_probs=63.8

Q ss_pred             hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc
Q 021008          106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM  185 (318)
Q Consensus       106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~  185 (318)
                      |.+.-.+.|.   +.++..++|.+||.+|.|.. ++++   +++|+|+|+||+|++.|++ .+.     +|++|+++|..
T Consensus        10 Ll~e~le~L~---~~~gg~~VD~T~G~GGHS~~-il~~---~g~VigiD~Dp~Ai~~A~~-L~~-----~rv~lv~~~f~   76 (285)
T 1wg8_A           10 LYQEALDLLA---VRPGGVYVDATLGGAGHARG-ILER---GGRVIGLDQDPEAVARAKG-LHL-----PGLTVVQGNFR   76 (285)
T ss_dssp             THHHHHHHHT---CCTTCEEEETTCTTSHHHHH-HHHT---TCEEEEEESCHHHHHHHHH-TCC-----TTEEEEESCGG
T ss_pred             HHHHHHHhhC---CCCCCEEEEeCCCCcHHHHH-HHHC---CCEEEEEeCCHHHHHHHHh-hcc-----CCEEEEECCcc
Confidence            3344444442   46778999999998777754 5553   7899999999999999998 543     69999999998


Q ss_pred             ccCc-----CCCCccEEEecccc
Q 021008          186 NVSS-----ALKDYEVVFLAALV  203 (318)
Q Consensus       186 ~l~~-----~l~~fD~V~~aalv  203 (318)
                      ++..     ..++||.|+++-.|
T Consensus        77 ~l~~~L~~~g~~~vDgIL~DLGv   99 (285)
T 1wg8_A           77 HLKRHLAALGVERVDGILADLGV   99 (285)
T ss_dssp             GHHHHHHHTTCSCEEEEEEECSC
T ss_pred             hHHHHHHHcCCCCcCEEEeCCcc
Confidence            8742     22479999987544

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.82  E-value=9.5e-05  Score=71.64  Aligned_cols=88  Identities=15%  Similarity=0.122  Sum_probs=62.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++++|+|+||+|+|.|-. ++++   |++|++||+.+=    +..+..     ..+|+++.+|+.......+.||+|+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~-l~~r---g~~V~aVD~~~l----~~~l~~-----~~~V~~~~~d~~~~~~~~~~~D~vv  275 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQ-LVKR---NMWVYSVDNGPM----AQSLMD-----TGQVTWLREDGFKFRPTRSNISWMV  275 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHH-HHHT---TCEEEEECSSCC----CHHHHT-----TTCEEEECSCTTTCCCCSSCEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHH-HHHC---CCEEEEEEhhhc----Chhhcc-----CCCeEEEeCccccccCCCCCcCEEE
Confidence            37899999999999999965 5653   899999998651    122222     2689999999998765556899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPG  224 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpG  224 (318)
                      .+-..     ...++++-+.+.+..|
T Consensus       276 sDm~~-----~p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          276 CDMVE-----KPAKVAALMAQWLVNG  296 (375)
T ss_dssp             ECCSS-----CHHHHHHHHHHHHHTT
T ss_pred             EcCCC-----ChHHhHHHHHHHHhcc
Confidence            87532     3344555555555554

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.76  E-value=8.8e-05  Score=69.55  Aligned_cols=97  Identities=15%  Similarity=0.147  Sum_probs=68.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc--cccc-cCcCCCCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT--DIMN-VSSALKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g--Da~~-l~~~l~~fD  195 (318)
                      ..++++||.+|+|++|..++.+|+.  .|++|+++|.+++..+.++++     |..  ..+-..  |..+ +....+.+|
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~l-----Ga~--~~i~~~~~~~~~~~~~~~g~~d  234 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARA--MGLRVAAVDIDDAKLNLARRL-----GAE--VAVNARDTDPAAWLQKEIGGAH  234 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHT-----TCS--EEEETTTSCHHHHHHHHHSSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHc-----CCC--EEEeCCCcCHHHHHHHhCCCCC
Confidence            4788999999999999999999986  499999999999998888663     321  112111  1111 111113689


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+..+..       ...++...+.|+|||+++.-.
T Consensus       235 ~vid~~g~-------~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          235 GVLVTAVS-------PKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             EEEESSCC-------HHHHHHHHHHEEEEEEEEECS
T ss_pred             EEEEeCCC-------HHHHHHHHHHhccCCEEEEeC
Confidence            99866521       346777889999999998764

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=97.76  E-value=0.00027  Score=65.17  Aligned_cols=137  Identities=12%  Similarity=0.116  Sum_probs=92.7

Q ss_pred             CCcccccCCcChhhHHHhhHHH--HHHHhhcccCCCCEEEEEccCCChHHHHHHHHh------CCCCcEEEEEe-----C
Q 021008           89 NPIANLNIFPYYSNYIKLSQLE--FNILTQHCSRFPTKIAFIGSGPLPLTSIVLAIN------HLTTTCFDNYD-----I  155 (318)
Q Consensus        89 ~P~~~L~~fpY~~ny~~L~~~E--~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~------~~~ga~V~gvD-----i  155 (318)
                      .|...|..||.|.+-..+.+.-  +++.. ....-|..|++.|+- -|.|++.+|+-      +.++-+|.++|     .
T Consensus        36 ~~~e~l~~~~~~~~~~~l~~~l~~~~l~~-~i~~vpG~ivE~GV~-rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P  113 (257)
T 3tos_A           36 PTEELVNNLPLFLRRHQMTDLLSMDALYR-QVLDVPGVIMEFGVR-FGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFP  113 (257)
T ss_dssp             CGGGGGGCGGGGCCHHHHHHHHHHHHHHH-HTTTSCSEEEEECCT-TCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCC
T ss_pred             ChHHHHHhHHhhhhHHHHHHHHHHHHHHH-HhhCCCCeEEEEecc-cCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCC
Confidence            3456678888877655555443  12222 223678899999997 57788887651      13568899999     3


Q ss_pred             ChH----------------------HHHH---HHHHhhcCCCC-CCCeEEEEcccccc-Cc-----CCCCccEEEecccc
Q 021008          156 DPS----------------------ANSK---ALSLVSSDPDL-STRMFFHTTDIMNV-SS-----ALKDYEVVFLAALV  203 (318)
Q Consensus       156 d~~----------------------ai~~---Ar~~~~~~~gl-~~ri~f~~gDa~~l-~~-----~l~~fD~V~~aalv  203 (318)
                      .+.                      .+..   .++..+. .|. .++++++.|++.+. +.     ....||+|++++  
T Consensus       114 ~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~-~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~--  190 (257)
T 3tos_A          114 DVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSDF-FGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL--  190 (257)
T ss_dssp             SCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTTST-TTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC--
T ss_pred             CCccccccccccccCcccccchhHHHHHHHHHHHhhhhh-cCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC--
Confidence            321                      1111   1222334 555 59999999999873 21     123699999998  


Q ss_pred             CCCh-hHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          204 GMDK-DEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       204 gm~~-~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                        +. +.....++.+..+|+|||++++.+.
T Consensus       191 --D~Y~~t~~~le~~~p~l~~GGvIv~DD~  218 (257)
T 3tos_A          191 --DLYEPTKAVLEAIRPYLTKGSIVAFDEL  218 (257)
T ss_dssp             --CCHHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             --cccchHHHHHHHHHHHhCCCcEEEEcCC
Confidence              43 5667789999999999999999984

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.75  E-value=0.00014  Score=73.57  Aligned_cols=113  Identities=12%  Similarity=0.132  Sum_probs=79.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhC--CCCcEEEEEeCChHHHHHHHHHhhcCCCCC-CCeEEEEcccccc--Cc-CCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINH--LTTTCFDNYDIDPSANSKALSLVSSDPDLS-TRMFFHTTDIMNV--SS-ALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~--~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~-~ri~f~~gDa~~l--~~-~l~~  193 (318)
                      .++.+|+|.+||.+++.. .+++..  .....++|+|+|+.+...|+.+..- .|+. .++.+.++|....  |. ....
T Consensus       220 ~~~~~VlDPaCGSG~fLi-~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l-~gi~~~~~~I~~gDtL~~d~p~~~~~~  297 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLL-NAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL-HGVPIENQFLHNADTLDEDWPTQEPTN  297 (542)
T ss_dssp             CTTCEEEETTCTTSTTGG-GHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH-TTCCGGGEEEEESCTTTSCSCCSSCCC
T ss_pred             CCCCEEeecccchhHHHH-HHHHHHHhccCceEEEEECcHHHHHHHHHHHHH-cCCCcCccceEecceeccccccccccc
Confidence            367899999999877764 344332  1367999999999999999988766 5665 5789999999865  32 3348


Q ss_pred             ccEEEeccc-------------------cC-CCh--hHHHHHHHHHHHhcc-CCeEEEEEcCCC
Q 021008          194 YEVVFLAAL-------------------VG-MDK--DEKIRVIDHLAKYMA-PGALLMLRSAHG  234 (318)
Q Consensus       194 fD~V~~aal-------------------vg-m~~--~~k~~vl~~l~r~Lk-pGg~lv~r~~~g  234 (318)
                      ||+|+..=-                   .| .+.  ..-..++.++.+.|+ |||++++-.++|
T Consensus       298 fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          298 FDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             BSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             ccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            999983210                   00 100  001348999999999 999987755444

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.74  E-value=2.8e-05  Score=78.77  Aligned_cols=111  Identities=10%  Similarity=0.009  Sum_probs=76.8

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCC---------------CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLT---------------TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM  185 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~---------------ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~  185 (318)
                      .+.+|+|.+||.+++... +++. ..               ...++|+|+|+.++..|+.+... .|+..++.+.++|..
T Consensus       244 ~~~~VlDPaCGSG~fLi~-a~~~-l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l-~gi~~~i~i~~gDtL  320 (544)
T 3khk_A          244 YKGRVYDPAMGSGGFFVS-SDKF-IEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI-RGIDFNFGKKNADSF  320 (544)
T ss_dssp             CSEEEEESSCTTCHHHHH-HHHH-HHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH-TTCCCBCCSSSCCTT
T ss_pred             CCCeEeCcccCcCcHHHH-HHHH-HHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH-hCCCcccceeccchh
Confidence            345999999998776543 2221 11               56899999999999999988776 677777766899987


Q ss_pred             ccCc-CCCCccEEEeccccC--------------------------CChh--HHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          186 NVSS-ALKDYEVVFLAALVG--------------------------MDKD--EKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       186 ~l~~-~l~~fD~V~~aalvg--------------------------m~~~--~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ..+. ....||+|+..=-.+                          .+..  .-..+++++.+.|+|||++++--++|
T Consensus       321 ~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          321 LDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             TSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred             cCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence            6543 234899998421000                          1100  11268999999999999987765544

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.71  E-value=3.8e-05  Score=72.36  Aligned_cols=92  Identities=16%  Similarity=0.213  Sum_probs=68.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++++||.+|+|++|..++.+|+.  .|++|+++|.+++..+.++++     |.  ...+  .|..++..   .+|+||
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~l-----Ga--~~v~--~~~~~~~~---~~D~vi  239 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVA--MGAEVSVFARNEHKKQDALSM-----GV--KHFY--TDPKQCKE---ELDFII  239 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHH--TTCEEEEECSSSTTHHHHHHT-----TC--SEEE--SSGGGCCS---CEEEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHhc-----CC--Ceec--CCHHHHhc---CCCEEE
Confidence            4789999999999999999999986  499999999999988887653     32  2222  34333322   799998


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -..  +-+     ..++...+.|+|||+++.-.
T Consensus       240 d~~--g~~-----~~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          240 STI--PTH-----YDLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             ECC--CSC-----CCHHHHHTTEEEEEEEEECC
T ss_pred             ECC--CcH-----HHHHHHHHHHhcCCEEEEEC
Confidence            543  211     24566678999999998865

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.69  E-value=0.00011  Score=69.42  Aligned_cols=97  Identities=15%  Similarity=0.162  Sum_probs=70.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE-----cccc----ccC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHT-----TDIM----NVS  188 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~-----gDa~----~l~  188 (318)
                      ..++++||.+|+|++|..++.+|+.  .|++ |+++|.+++..+.++++ ..     .-+.+..     .|..    ++.
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~l-~~-----~~~~~~~~~~~~~~~~~~v~~~t  248 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKA--AGACPLVITDIDEGRLKFAKEI-CP-----EVVTHKVERLSAEESAKKIVESF  248 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHH--TTCCSEEEEESCHHHHHHHHHH-CT-----TCEEEECCSCCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHh-ch-----hcccccccccchHHHHHHHHHHh
Confidence            4788999999999999999999986  4887 99999999999999987 32     2233321     1111    111


Q ss_pred             cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          189 SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       189 ~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       .-..+|+||-..  |     ....++...+.|+|||++++-.
T Consensus       249 -~g~g~Dvvid~~--g-----~~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          249 -GGIEPAVALECT--G-----VESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             -SSCCCSEEEECS--C-----CHHHHHHHHHHSCTTCEEEECC
T ss_pred             -CCCCCCEEEECC--C-----ChHHHHHHHHHhcCCCEEEEEc
Confidence             123799999554  2     1235677789999999998764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.68  E-value=9.4e-05  Score=69.98  Aligned_cols=98  Identities=17%  Similarity=0.158  Sum_probs=67.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE---Ecccc-ccC--cCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFH---TTDIM-NVS--SAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~---~gDa~-~l~--~~l  191 (318)
                      ..++++||.+|+|++|+.++.+|+.+  |+ +|+++|.+++..+.++++     |...-+.+.   ..|.. .+.  .. 
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l-----Ga~~vi~~~~~~~~~~~~~i~~~~~-  240 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKEI-----GADLVLQISKESPQEIARKVEGQLG-  240 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT-----TCSEEEECSSCCHHHHHHHHHHHHT-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-----CCCEEEcCcccccchHHHHHHHHhC-
Confidence            47889999999999999999999864  88 999999999988887653     332111111   01111 111  12 


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..||+||-..-       ....++...+.|+|||+++.-.
T Consensus       241 ~g~D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          241 CKPEVTIECTG-------AEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             SCCSEEEECSC-------CHHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCCEEEECCC-------ChHHHHHHHHHhcCCCEEEEEe
Confidence            47999995542       1235667789999999998754

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.62  E-value=2.9e-05  Score=73.10  Aligned_cols=98  Identities=12%  Similarity=0.087  Sum_probs=68.1

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE-ccc-cccCcCCCCccEEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT-TDI-MNVSSALKDYEVVF  198 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~-gDa-~~l~~~l~~fD~V~  198 (318)
                      ++++||.+|+|++|..++.+|+..+||++|+++|.+++..+.++++     |...-+.... .|. .++. .-..||+||
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l-----Ga~~vi~~~~~~~~~~~~~-~g~g~D~vi  243 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL-----GADYVSEMKDAESLINKLT-DGLGASIAI  243 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-----TCSEEECHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh-----CCCEEeccccchHHHHHhh-cCCCccEEE
Confidence            7899999999999999999998754599999999999998888764     2211011101 111 1221 112799999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -..  | .    ...++...+.|+|||+++.-.
T Consensus       244 d~~--g-~----~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          244 DLV--G-T----EETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             ESS--C-C----HHHHHHHHHHEEEEEEEEECC
T ss_pred             ECC--C-C----hHHHHHHHHHhhcCCEEEEeC
Confidence            654  2 1    235777789999999988754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.56  E-value=5.4e-05  Score=72.28  Aligned_cols=99  Identities=13%  Similarity=0.176  Sum_probs=69.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCc----CCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSS----ALK  192 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~----~l~  192 (318)
                      ..++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.++++=..     .-+.+...|..+ +..    ..+
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~lGa~-----~vi~~~~~~~~~~i~~~~~~~~g  252 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARL--AGATTVILSTRQATKRRLAEEVGAT-----ATVDPSAGDVVEAIAGPVGLVPG  252 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCHHHHHHHHHHTCS-----EEECTTSSCHHHHHHSTTSSSTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHcCCC-----EEECCCCcCHHHHHHhhhhccCC
Confidence            4788999999999999999999986  488 999999999998888775221     111111122111 110    112


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .||+||-..  |     ....++...+.|+|||++++-.
T Consensus       253 g~Dvvid~~--G-----~~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          253 GVDVVIECA--G-----VAETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             CEEEEEECS--C-----CHHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCEEEECC--C-----CHHHHHHHHHHhccCCEEEEEe
Confidence            799999554  2     1346777889999999998865

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.54  E-value=0.00016  Score=67.37  Aligned_cols=120  Identities=12%  Similarity=0.102  Sum_probs=69.5

Q ss_pred             hHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC--CCCCeEE
Q 021008          102 NYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD--LSTRMFF  179 (318)
Q Consensus       102 ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g--l~~ri~f  179 (318)
                      -..+|.++.-.    ....++.+|||+||||+|.|-. .+++ .+-..|+|+|+.-+....     .. .+  .+.++.+
T Consensus        59 aA~KL~ei~ek----~~l~~~~~VLDLGaAPGGWSQv-Aa~~-~~~~~v~g~dVGvDl~~~-----pi-~~~~~g~~ii~  126 (277)
T 3evf_A           59 GTAKLRWFHER----GYVKLEGRVIDLGCGRGGWCYY-AAAQ-KEVSGVKGFTLGRDGHEK-----PM-NVQSLGWNIIT  126 (277)
T ss_dssp             HHHHHHHHHHT----TSSCCCEEEEEETCTTCHHHHH-HHTS-TTEEEEEEECCCCTTCCC-----CC-CCCBTTGGGEE
T ss_pred             HHHHHHHHHHh----CCCCCCCEEEEecCCCCHHHHH-HHHh-cCCCcceeEEEeccCccc-----cc-ccCcCCCCeEE
Confidence            34456555433    2246778999999999999854 3432 134478899987532100     11 11  1224444


Q ss_pred             EEccccccCcCCCCccEEEecccc--CCChhHH---HHHHHHHHHhccCC-eEEEEEcCC
Q 021008          180 HTTDIMNVSSALKDYEVVFLAALV--GMDKDEK---IRVIDHLAKYMAPG-ALLMLRSAH  233 (318)
Q Consensus       180 ~~gDa~~l~~~l~~fD~V~~aalv--gm~~~~k---~~vl~~l~r~LkpG-g~lv~r~~~  233 (318)
                      ..+++.........||+|+.+...  |...-+-   ..+++.+.+.|+|| |.+++.-..
T Consensus       127 ~~~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          127 FKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             EECSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             EeccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            555543222233489999976422  2211111   23567788999999 999997665

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.53  E-value=0.00012  Score=69.55  Aligned_cols=99  Identities=12%  Similarity=0.068  Sum_probs=67.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCc-CCCCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSS-ALKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~-~l~~fD  195 (318)
                      ..++++||.+|+|++|..++.+|+..  |+ +|+++|.+++..+.++++-..     .-+.....|..+ +.. ..+.||
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~~Vi~~~~~~~~~~~a~~lGa~-----~vi~~~~~~~~~~~~~~~~gg~D  260 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQLGAT-----HVINSKTQDPVAAIKEITDGGVN  260 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHHHTCS-----EEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHcCCC-----EEecCCccCHHHHHHHhcCCCCc
Confidence            47889999999999999999999864  88 799999999999988765221     111110111111 100 112699


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +||-..  |     ....++...+.|+|||++++-.
T Consensus       261 ~vid~~--g-----~~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          261 FALEST--G-----SPEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             EEEECS--C-----CHHHHHHHHHTEEEEEEEEECC
T ss_pred             EEEECC--C-----CHHHHHHHHHHHhcCCEEEEeC
Confidence            998554  2     1246777889999999998754

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.50  E-value=0.00032  Score=66.12  Aligned_cols=97  Identities=16%  Similarity=0.100  Sum_probs=67.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc---ccc-ccCc--C--
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT---DIM-NVSS--A--  190 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g---Da~-~l~~--~--  190 (318)
                      ..++++||.+|+|++|..++.+|+.  .|++|+++|.+++..+.++++     |..  ..+-..   |.. .+..  .  
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~l-----Ga~--~~~~~~~~~~~~~~i~~~~~~~  236 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKA--YGAFVVCTARSPRRLEVAKNC-----GAD--VTLVVDPAKEEESSIIERIRSA  236 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHT-----TCS--EEEECCTTTSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHHh-----CCC--EEEcCcccccHHHHHHHHhccc
Confidence            4788999999999999999999986  489999999999988888653     332  112111   111 1110  0  


Q ss_pred             -CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 -LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 -l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       -..+|+||-..-.       ...++...+.|+|||+++.-.
T Consensus       237 ~g~g~D~vid~~g~-------~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          237 IGDLPNVTIDCSGN-------EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             SSSCCSEEEECSCC-------HHHHHHHHHHSCTTCEEEECS
T ss_pred             cCCCCCEEEECCCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence             1369999865421       235677789999999998754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.49  E-value=0.00017  Score=67.94  Aligned_cols=98  Identities=18%  Similarity=0.230  Sum_probs=68.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc----ccCcCCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM----NVSSALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~----~l~~~l~~  193 (318)
                      ..++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.++++-..     .-+.....|..    ++. .-..
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~~Vi~~~~~~~~~~~~~~lGa~-----~vi~~~~~~~~~~v~~~t-~g~g  235 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANH--LGAGRIFAVGSRKHCCDIALEYGAT-----DIINYKNGDIVEQILKAT-DGKG  235 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHT--TTCSSEEEECCCHHHHHHHHHHTCC-----EEECGGGSCHHHHHHHHT-TTCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHHhCCc-----eEEcCCCcCHHHHHHHHc-CCCC
Confidence            4788999999999999999999985  588 899999999988888775321     10111011111    111 1126


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||+||-..  |.     ...++...+.|+|||+++.-.
T Consensus       236 ~D~v~d~~--g~-----~~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          236 VDKVVIAG--GD-----VHTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EEEEEECS--SC-----TTHHHHHHHHEEEEEEEEECC
T ss_pred             CCEEEECC--CC-----hHHHHHHHHHHhcCCEEEEec
Confidence            99998543  21     235677789999999998765

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.48  E-value=0.00052  Score=56.29  Aligned_cols=96  Identities=9%  Similarity=-0.004  Sum_probs=67.2

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEE
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVV  197 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V  197 (318)
                      ..+|+.+|+|.+|.......++  .|..|+++|.|++.++.+++         ..+.++.||+.+..    .....+|+|
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~~~~~~~~~---------~g~~~i~gd~~~~~~l~~a~i~~ad~v   75 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSRTRVDELRE---------RGVRAVLGNAANEEIMQLAHLECAKWL   75 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHH---------TTCEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH---------cCCCEEECCCCCHHHHHhcCcccCCEE
Confidence            4689999999888776554443  48999999999998877653         23567889987631    123478988


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +++.    +.......+...++.+.|+..++.|..
T Consensus        76 i~~~----~~~~~n~~~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           76 ILTI----PNGYEAGEIVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             EECC----SCHHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred             EEEC----CChHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            8664    222333334556788899999888774

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.46  E-value=0.00012  Score=69.83  Aligned_cols=96  Identities=14%  Similarity=0.176  Sum_probs=66.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc-ccccCcCCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD-IMNVSSALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD-a~~l~~~l~~fD~V  197 (318)
                      ..++++||.+|+|++|..++.+|+.  .|++|+++|.+++..+.++++     |...-+.....| +.++.   ..||+|
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~Vi~~~~~~~~~~~a~~l-----Ga~~vi~~~~~~~~~~~~---~g~Dvv  261 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHA--MGAHVVAFTTSEAKREAAKAL-----GADEVVNSRNADEMAAHL---KSFDFI  261 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHH-----TCSEEEETTCHHHHHTTT---TCEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHc-----CCcEEeccccHHHHHHhh---cCCCEE
Confidence            4788999999999999999999986  499999999999998888764     221111110111 11121   479999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |-..-.  +     ..++...+.|+|||+++.-.
T Consensus       262 id~~g~--~-----~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          262 LNTVAA--P-----HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             EECCSS--C-----CCHHHHHTTEEEEEEEEECC
T ss_pred             EECCCC--H-----HHHHHHHHHhccCCEEEEec
Confidence            855421  1     13555678999999988754

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=97.43  E-value=7.1e-05  Score=71.81  Aligned_cols=105  Identities=10%  Similarity=0.088  Sum_probs=68.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc-cc-ccC--cCCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD-IM-NVS--SALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD-a~-~l~--~~l~~  193 (318)
                      ..++++||.+|+|++|+.++.+|+..  |+ +|+++|.+++..+.+++     +|. +-+.+...| .. .+.  ..-..
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~--Ga~~Vi~~~~~~~~~~~a~~-----lGa-~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLL--GAAVVIVGDLNPARLAHAKA-----QGF-EIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH-----TTC-EEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHC--CCCeEEEEcCCHHHHHHHHH-----cCC-cEEccCCcchHHHHHHHHhCCCC
Confidence            47889999999999999999999864  88 79999999999888865     343 111111111 01 111  11136


Q ss_pred             ccEEEeccccC--------CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVG--------MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvg--------m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+||-..-..        +..+.+...++...+.|++||++++-.
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            99998543210        001123346788889999999998754

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.41  E-value=0.00038  Score=65.33  Aligned_cols=94  Identities=13%  Similarity=0.099  Sum_probs=67.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc--ccCc---C-CC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM--NVSS---A-LK  192 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~--~l~~---~-l~  192 (318)
                      ..++++||.+|+|++|..++.+|+.  .|++|+++|.+++..+.++++     |..   .++  |..  ++..   . .+
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~l-----Ga~---~~~--d~~~~~~~~~~~~~~~  229 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKA--MGLNVVAVDIGDEKLELAKEL-----GAD---LVV--NPLKEDAAKFMKEKVG  229 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHT-----TCS---EEE--CTTTSCHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHC-----CCC---EEe--cCCCccHHHHHHHHhC
Confidence            4788999999999999999999986  489999999999988887653     321   111  211  1100   0 04


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+|+-.+-.       ...++...+.|++||+++.-.
T Consensus       230 ~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          230 GVHAAVVTAVS-------KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             SEEEEEESSCC-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECCCC-------HHHHHHHHHHhhcCCEEEEec
Confidence            79999865421       235677789999999998754

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.40  E-value=4.7e-05  Score=73.26  Aligned_cols=103  Identities=11%  Similarity=0.127  Sum_probs=67.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc-c-ccC--cCCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI-M-NVS--SALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa-~-~l~--~~l~~  193 (318)
                      ..++++||.+|+|++|+.++.+|+.+  |+ +|+++|.+++..+.+++     .|. +-+.+...|. . .+.  ..-..
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~-----lGa-~~i~~~~~~~~~~~~~~~~~g~g  254 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLL--GAACVIVGDQNPERLKLLSD-----AGF-ETIDLRNSAPLRDQIDQILGKPE  254 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHT-----TTC-EEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH-----cCC-cEEcCCCcchHHHHHHHHhCCCC
Confidence            47889999999999999999999864  88 99999999998887754     343 1111111111 1 110  11126


Q ss_pred             ccEEEeccccCCCh---------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDK---------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~---------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||+||-..  |...         .+....++...+.|+|||++++-.
T Consensus       255 ~Dvvid~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          255 VDCGVDAV--GFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             EEEEEECS--CTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             CCEEEECC--CCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            99998544  2110         011246778889999999987654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.39  E-value=6.7e-05  Score=72.34  Aligned_cols=103  Identities=20%  Similarity=0.210  Sum_probs=67.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|+.||+|++|..+..+++.+  |++|+++|.+++..+.+++....      .+.....+..++...+..+|+|+.
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~g~------~~~~~~~~~~~l~~~l~~aDvVi~  237 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEFCG------RIHTRYSSAYELEGAVKRADLVIG  237 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTT------SSEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhcCC------eeEeccCCHHHHHHHHcCCCEEEE
Confidence            4689999999999999998888864  89999999999888777654322      222221122222222236899998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...++.. +.+.-+.++..+.|||||+++--.
T Consensus       238 ~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          238 AVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCCcCCC-CCcceecHHHHhcCCCCcEEEEEe
Confidence            6654321 111112445568899999887654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.37  E-value=0.00018  Score=68.20  Aligned_cols=96  Identities=14%  Similarity=0.076  Sum_probs=67.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC------cCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS------SALK  192 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~------~~l~  192 (318)
                      ..++++||.+|+|++|+.++.+|+.  .|++|+++|.+++..+.++++     |.  ...+ ..+..++.      ..-.
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~l-----Ga--~~vi-~~~~~~~~~~v~~~~~g~  256 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKA--TGAEVIVTSSSREKLDRAFAL-----GA--DHGI-NRLEEDWVERVYALTGDR  256 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHH-----TC--SEEE-ETTTSCHHHHHHHHHTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEecCchhHHHHHHc-----CC--CEEE-cCCcccHHHHHHHHhCCC
Confidence            4788999999999999999999986  499999999999988888764     22  1111 12111110      1122


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .+|+||-.+- +       ..+....+.|+|||++++-..
T Consensus       257 g~D~vid~~g-~-------~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          257 GADHILEIAG-G-------AGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             CEEEEEEETT-S-------SCHHHHHHHEEEEEEEEEECC
T ss_pred             CceEEEECCC-h-------HHHHHHHHHhhcCCEEEEEec
Confidence            7999985542 1       245667789999999987653

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=97.32  E-value=0.00028  Score=66.06  Aligned_cols=99  Identities=11%  Similarity=0.054  Sum_probs=68.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc----cCcCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN----VSSALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~----l~~~l~~f  194 (318)
                      ..++++||.+|+|++|..++.+|+.. .|++|+++|.+++..+.++++-.     ..-+.+...|..+    +. .-..+
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~-~g~~Vi~~~~~~~r~~~~~~~Ga-----~~~i~~~~~~~~~~v~~~t-~g~g~  233 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNV-FGAKVIAVDINQDKLNLAKKIGA-----DVTINSGDVNPVDEIKKIT-GGLGV  233 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHHHTTC-----SEEEEC-CCCHHHHHHHHT-TSSCE
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHh-CCCEEEEEECcHHHhhhhhhcCC-----eEEEeCCCCCHHHHhhhhc-CCCCc
Confidence            47889999999999888888888753 68999999999998888776432     2223332233221    21 11267


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |.++.++.-       ...+....+.+++||++++-.
T Consensus       234 d~~~~~~~~-------~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          234 QSAIVCAVA-------RIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             EEEEECCSC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred             eEEEEeccC-------cchhheeheeecCCceEEEEe
Confidence            888766521       335667778999999988765

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.31  E-value=0.00049  Score=65.52  Aligned_cols=97  Identities=14%  Similarity=0.153  Sum_probs=67.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE--Ecccc----ccCcCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFH--TTDIM----NVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~--~gDa~----~l~~~l  191 (318)
                      ..++++||.+|+|++|+.++.+|+..  |+ +|+++|.+++..+.|+++     |...-+.+.  ..|..    ++..  
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~--Ga~~Vi~~~~~~~~~~~a~~l-----Ga~~vi~~~~~~~~~~~~i~~~~~--  261 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTA--GASRIIGIDIDSKKYETAKKF-----GVNEFVNPKDHDKPIQEVIVDLTD--  261 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHH--TCSCEEEECSCTTHHHHHHTT-----TCCEEECGGGCSSCHHHHHHHHTT--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc-----CCcEEEccccCchhHHHHHHHhcC--
Confidence            47889999999999999999999864  88 899999999998887653     332111110  01111    1211  


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      +.+|+||-..  |     ....++...+.|+|| |++++-.
T Consensus       262 gg~D~vid~~--g-----~~~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          262 GGVDYSFECI--G-----NVSVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             SCBSEEEECS--C-----CHHHHHHHHHTBCTTTCEEEECS
T ss_pred             CCCCEEEECC--C-----CHHHHHHHHHHhhccCCEEEEEc
Confidence            2799999554  2     134577788999997 9988765

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=97.31  E-value=0.00014  Score=68.32  Aligned_cols=99  Identities=14%  Similarity=0.078  Sum_probs=69.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc----ccCcCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM----NVSSALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~----~l~~~l~~f  194 (318)
                      ..++++||.+|+|++|..++.+|+.. .+++|+++|.+++..+.++++     |...-+.. ..|..    ++. .-..+
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~-g~~~Vi~~~~~~~~~~~~~~l-----Ga~~~i~~-~~~~~~~v~~~t-~g~g~  240 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAV-SAARVIAVDLDDDRLALAREV-----GADAAVKS-GAGAADAIRELT-GGQGA  240 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESCHHHHHHHHHT-----TCSEEEEC-STTHHHHHHHHH-GGGCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc-----CCCEEEcC-CCcHHHHHHHHh-CCCCC
Confidence            47889999999999999999999863 478999999999998888764     32211111 00111    111 11279


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+||-..  |     ....++...+.|+|||++++-..
T Consensus       241 d~v~d~~--G-----~~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          241 TAVFDFV--G-----AQSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             EEEEESS--C-----CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             eEEEECC--C-----CHHHHHHHHHHHhcCCEEEEECC
Confidence            9998544  2     12367778899999999987653

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=97.30  E-value=0.00078  Score=62.59  Aligned_cols=94  Identities=10%  Similarity=-0.028  Sum_probs=63.4

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCcCCCCccE
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSSALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~~l~~fD~  196 (318)
                      ..++++||.+| +|++|+.++.+|+.  .|++|++++ +++..+.++++     |...   ++..+-.+ +......+|+
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~--~Ga~vi~~~-~~~~~~~~~~l-----Ga~~---~i~~~~~~~~~~~~~g~D~  218 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQ--KGTTVITTA-SKRNHAFLKAL-----GAEQ---CINYHEEDFLLAISTPVDA  218 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEE-CHHHHHHHHHH-----TCSE---EEETTTSCHHHHCCSCEEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHH--cCCEEEEEe-ccchHHHHHHc-----CCCE---EEeCCCcchhhhhccCCCE
Confidence            47889999997 99999999999986  499999998 45445665543     3321   22211112 2233357999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||-..  |    . . .+....+.|+|||+++.-.
T Consensus       219 v~d~~--g----~-~-~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          219 VIDLV--G----G-D-VGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             EEESS--C----H-H-HHHHHGGGEEEEEEEEECC
T ss_pred             EEECC--C----c-H-HHHHHHHhccCCCEEEEeC
Confidence            98543  2    1 1 2367789999999998753

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.28  E-value=8.2e-05  Score=72.31  Aligned_cols=100  Identities=19%  Similarity=0.257  Sum_probs=68.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-----------------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-----------------  182 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-----------------  182 (318)
                      .++.+|+.||.|++|..+..+++.+  |++|+++|++++..+.++++-.         +|+..                 
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~lGa---------~~~~l~~~~~~~~gya~~~~~~  250 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRSVGA---------QWLDLGIDAAGEGGYARELSEA  250 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHHTTC---------EECCCC-------------CHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCC---------eEEeccccccccccchhhhhHH
Confidence            4789999999999999999998875  9999999999998888765311         12110                 


Q ss_pred             ----cccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          183 ----DIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       183 ----Da~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                          +..++......+|+|+...+++-...++ -+-+++.+.||||++++=-.
T Consensus       251 ~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~-Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          251 ERAQQQQALEDAITKFDIVITTALVPGRPAPR-LVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCTTSCCCC-CBCHHHHHTSCTTCEEEETT
T ss_pred             HHhhhHHHHHHHHhcCCEEEECCCCCCcccce-eecHHHHhcCCCCcEEEEEe
Confidence                1112223345899999876653211111 13467789999998776544

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.27  E-value=0.0001  Score=72.17  Aligned_cols=109  Identities=18%  Similarity=0.216  Sum_probs=68.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC-------CCeE-EEE--------cc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS-------TRMF-FHT--------TD  183 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~-------~ri~-f~~--------gD  183 (318)
                      .++.+|+.||+|++|..+..+++.+  |++|+.+|++++..+.++++-..-..+.       .... |..        ..
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~  265 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQ  265 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhh
Confidence            4789999999999999999999864  9999999999998888776311100000       0000 000        00


Q ss_pred             ccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          184 IMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       184 a~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..++.......|+|+..++++-...++ -+-+++.+.||||++++=-.
T Consensus       266 ~~~l~e~l~~aDVVI~tvlipg~~ap~-Lvt~emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          266 AALVAEHIAKQDIVITTALIPGRPAPR-LVTREMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHHHTCSEEEECCCCSSSCCCC-CBCHHHHTTSCTTCEEEETT
T ss_pred             HhHHHHHhcCCCEEEECCcCCCCCCCE-EecHHHHhcCCCCCEEEEEe
Confidence            011212234789999877663221211 13467789999998876554

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.26  E-value=0.0008  Score=71.09  Aligned_cols=112  Identities=11%  Similarity=0.043  Sum_probs=71.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCC---CcEEEEEeCChHHHHHH--HHHhhcCCCCC---CCeEEEEccccccC-cC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLT---TTCFDNYDIDPSANSKA--LSLVSSDPDLS---TRMFFHTTDIMNVS-SA  190 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~---ga~V~gvDid~~ai~~A--r~~~~~~~gl~---~ri~f~~gDa~~l~-~~  190 (318)
                      .++.+|+|.|||.+++. +.++++. +   ..+++|+|+|+.+++.|  +..... .++.   ....+...|..+.. ..
T Consensus       320 ~~g~rVLDPaCGSG~FL-IaaA~~l-~ei~~~~IyGvEIDp~Al~LAK~RlNL~l-N~LlhGi~~~~I~~dD~L~~~~~~  396 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLL-ATVSAGF-NNVMPRQIWANDIETLFLELLSIRLGLLF-PQLVSSNNAPTITGEDVCSLNPED  396 (878)
T ss_dssp             CTTCEEEETTCTTSHHH-HHHHHTS-TTCCGGGEEEECSCGGGHHHHHHHHHTTS-TTTCBTTBCCEEECCCGGGCCGGG
T ss_pred             CCCCEEEECCCCccHHH-HHHHHHh-cccCCCeEEEEECCHHHHHHHHHHHHHHH-hhhhcCCCcceEEecchhcccccc
Confidence            35789999999986665 4555532 3   46899999999999999  544432 1221   22356666766532 23


Q ss_pred             CCCccEEEecc-c---cCCChh------------------------HHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          191 LKDYEVVFLAA-L---VGMDKD------------------------EKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       191 l~~fD~V~~aa-l---vgm~~~------------------------~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ...||+|+..= +   ..++..                        -...+++++.+.|+|||++++-.+++
T Consensus       397 ~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          397 FANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             GTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred             cCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence            35899998421 1   011110                        12347889999999999988766544

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=97.26  E-value=0.001  Score=63.95  Aligned_cols=100  Identities=11%  Similarity=0.110  Sum_probs=65.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~  193 (318)
                      ..++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.++++-..     .-+.....|.    .++. .-..
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~~~~lGa~-----~vi~~~~~~~~~~i~~~t-~g~g  282 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKH--AGASKVILSEPSEVRRNLAKELGAD-----HVIDPTKENFVEAVLDYT-NGLG  282 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCHHHHHHHHHHTCS-----EEECTTTSCHHHHHHHHT-TTCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHcCCC-----EEEcCCCCCHHHHHHHHh-CCCC
Confidence            4688999999999999999999986  488 999999999999998765321     1000000111    1121 1126


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhc----cCCeEEEEEcC
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYM----APGALLMLRSA  232 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~L----kpGg~lv~r~~  232 (318)
                      +|+||-..  |    .....+..+.+.|    ++||++++-..
T Consensus       283 ~D~vid~~--g----~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          283 AKLFLEAT--G----VPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CSEEEECS--S----CHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCEEEECC--C----CcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            99999543  2    1122334444445    99999988653

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.25  E-value=0.00029  Score=66.30  Aligned_cols=96  Identities=14%  Similarity=0.118  Sum_probs=66.2

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCCcc
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKDYE  195 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~fD  195 (318)
                      ++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.++++-..     .-+.....|.    .++. .-..+|
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~--~Ga~~Vi~~~~~~~~~~~~~~~Ga~-----~~~~~~~~~~~~~v~~~~-~g~g~D  238 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKA--SGAYPVIVSEPSDFRRELAKKVGAD-----YVINPFEEDVVKEVMDIT-DGNGVD  238 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHHTCS-----EEECTTTSCHHHHHHHHT-TTSCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHhCCC-----EEECCCCcCHHHHHHHHc-CCCCCC
Confidence            78999999999999999999986  488 999999999988888764221     0000000111    1111 112699


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +||-..-       -...++...+.|++||+++.-.
T Consensus       239 ~vid~~g-------~~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          239 VFLEFSG-------APKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             EEEECSC-------CHHHHHHHHHHEEEEEEEEECC
T ss_pred             EEEECCC-------CHHHHHHHHHHHhcCCEEEEEc
Confidence            9986542       1245677789999999998765

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=97.25  E-value=0.00037  Score=66.58  Aligned_cols=95  Identities=14%  Similarity=0.104  Sum_probs=66.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc------ccc----cc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT------DIM----NV  187 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g------Da~----~l  187 (318)
                      ..++++||.+|+|++|..++.+|+.  .| ++|+++|.+++..+.+++     .|..   .++..      |..    ++
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~~~~-----lGa~---~vi~~~~~~~~~~~~~v~~~  262 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARS--LGAENVIVIAGSPNRLKLAEE-----IGAD---LTLNRRETSVEERRKAIMDI  262 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHH--TTBSEEEEEESCHHHHHHHHH-----TTCS---EEEETTTSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHH--cCCceEEEEcCCHHHHHHHHH-----cCCc---EEEeccccCcchHHHHHHHH
Confidence            4678999999999999999999986  48 599999999998888764     3321   11211      111    11


Q ss_pred             CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          188 SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 ~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      . .-..+|+||-..-.       ...++...+.|+|||+++.-.
T Consensus       263 ~-~g~g~Dvvid~~g~-------~~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          263 T-HGRGADFILEATGD-------SRALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             T-TTSCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred             h-CCCCCcEEEECCCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence            1 11269999855421       124666789999999998765

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=97.24  E-value=0.00032  Score=64.96  Aligned_cols=90  Identities=11%  Similarity=0.057  Sum_probs=63.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++++||.+|+|++|..++.+|+..  |++|+++| +++..+.++++-..        .++ -|..++   -..||+||
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~lGa~--------~v~-~d~~~v---~~g~Dvv~  204 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNA--GYVVDLVS-ASLSQALAAKRGVR--------HLY-REPSQV---TQKYFAIF  204 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEEC-SSCCHHHHHHHTEE--------EEE-SSGGGC---CSCEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEE-ChhhHHHHHHcCCC--------EEE-cCHHHh---CCCccEEE
Confidence            47889999999999999999999864  99999999 99988888764221        111 142222   23899998


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -..  |-   +   .+....+.|+|||+++.-.
T Consensus       205 d~~--g~---~---~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          205 DAV--NS---Q---NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             CC---------------TTGGGEEEEEEEEEEC
T ss_pred             ECC--Cc---h---hHHHHHHHhcCCCEEEEEe
Confidence            443  21   1   1245678999999988764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.23  E-value=0.00014  Score=68.97  Aligned_cols=99  Identities=10%  Similarity=0.116  Sum_probs=66.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V  197 (318)
                      ..++++||.+|+|++|..++.+|+.+  |++|+++|.+++..+.++++     |. + ..+-..+..+..... +.||+|
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~l-----Ga-~-~v~~~~~~~~~~~~~~~~~D~v  247 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKM-----GA-D-HYIATLEEGDWGEKYFDTFDLI  247 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH-----TC-S-EEEEGGGTSCHHHHSCSCEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHc-----CC-C-EEEcCcCchHHHHHhhcCCCEE
Confidence            47889999999999999999999864  89999999999988888764     21 1 111111110111111 479999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |-..-. .+    ...++...+.|+|||+++.-.
T Consensus       248 id~~g~-~~----~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          248 VVCASS-LT----DIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             EECCSC-ST----TCCTTTGGGGEEEEEEEEECC
T ss_pred             EECCCC-Cc----HHHHHHHHHHhcCCCEEEEec
Confidence            855421 00    123455678999999998754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.23  E-value=0.0013  Score=55.90  Aligned_cols=96  Identities=9%  Similarity=-0.026  Sum_probs=63.3

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCC-CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc---Cc--CCCCc
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLT-TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV---SS--ALKDY  194 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~-ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l---~~--~l~~f  194 (318)
                      .+++|+.+|+|.+|.......++  . |..|+++|.|++.++.+++     .|    +.++.+|..+.   ..  ...++
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~--~~g~~V~vid~~~~~~~~~~~-----~g----~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRA--RYGKISLGIEIREEAAQQHRS-----EG----RNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHH--HHCSCEEEEESCHHHHHHHHH-----TT----CCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--ccCCeEEEEECCHHHHHHHHH-----CC----CCEEEcCCCCHHHHHhccCCCCC
Confidence            35799999999887765544432  4 7899999999987766542     22    35667887652   11  24579


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|++..-   + ......+-...+.+.|++.++.+.
T Consensus       107 d~vi~~~~---~-~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          107 KLVLLAMP---H-HQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             CEEEECCS---S-HHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CEEEEeCC---C-hHHHHHHHHHHHHHCCCCEEEEEE
Confidence            99887541   2 222333344667788888888765

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.23  E-value=0.00094  Score=63.42  Aligned_cols=98  Identities=14%  Similarity=0.126  Sum_probs=67.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc----cccc-cCc-CC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT----DIMN-VSS-AL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g----Da~~-l~~-~l  191 (318)
                      ..++++||.+|+|++|..++.+|+..  |+ +|+++|.+++..+.++++     |..  ..+-..    |..+ +.. ..
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l-----Ga~--~vi~~~~~~~~~~~~v~~~~~  263 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKAL-----GAT--DCLNPRELDKPVQDVITELTA  263 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHT-----TCS--EEECGGGCSSCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHh-----CCc--EEEccccccchHHHHHHHHhC
Confidence            46789999999999999999999864  88 899999999988887653     321  111111    1111 100 01


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEcC
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRSA  232 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~~  232 (318)
                      +.+|+||-..  | .    ...++...+.|++| |++++-..
T Consensus       264 ~g~Dvvid~~--G-~----~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          264 GGVDYSLDCA--G-T----AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             SCBSEEEESS--C-C----HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             CCccEEEECC--C-C----HHHHHHHHHHhhcCCCEEEEECC
Confidence            2799998554  2 1    24567778999999 99987543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.23  E-value=0.00083  Score=63.71  Aligned_cols=95  Identities=14%  Similarity=0.122  Sum_probs=67.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc----ccc----ccCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT----DIM----NVSS  189 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g----Da~----~l~~  189 (318)
                      ..++++||.+|+|++|..++.+|+..  |+ +|+++|.+++..+.++++     |..  ..+-..    |..    ++. 
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l-----Ga~--~vi~~~~~~~~~~~~i~~~t-  258 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAA--GASRIIGVGTHKDKFPKAIEL-----GAT--ECLNPKDYDKPIYEVICEKT-  258 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHHT-----TCS--EEECGGGCSSCHHHHHHHHT-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHc-----CCc--EEEecccccchHHHHHHHHh-
Confidence            46889999999999999999999864  88 899999999988888653     321  111111    111    111 


Q ss_pred             CCCCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          190 ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      . +.+|+||-..  |     ....++...+.|+|| |+++.-.
T Consensus       259 ~-gg~Dvvid~~--g-----~~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          259 N-GGVDYAVECA--G-----RIETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             T-SCBSEEEECS--C-----CHHHHHHHHHTBCTTTCEEEECC
T ss_pred             C-CCCCEEEECC--C-----CHHHHHHHHHHHhcCCCEEEEEc
Confidence            1 3799999554  2     124577778999999 9988754

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.22  E-value=0.0002  Score=67.80  Aligned_cols=98  Identities=11%  Similarity=0.086  Sum_probs=65.1

Q ss_pred             cC-CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008          119 SR-FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       119 ~~-~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      .. ++++||.+|+|++|..++.+|+..  |++|+++|.+++..+.+++   + .|.. .+ +-..|...+....+.+|+|
T Consensus       177 ~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~---~-lGa~-~v-i~~~~~~~~~~~~~g~D~v  248 (357)
T 2cf5_A          177 LKQPGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQ---D-LGAD-DY-VIGSDQAKMSELADSLDYV  248 (357)
T ss_dssp             TTSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHT---T-SCCS-CE-EETTCHHHHHHSTTTEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---H-cCCc-ee-eccccHHHHHHhcCCCCEE
Confidence            35 889999999999999999999864  8999999999987777652   2 3432 11 1111211111112379999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |-..-.  +     ..++...+.|+|||+++.-.
T Consensus       249 id~~g~--~-----~~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          249 IDTVPV--H-----HALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             EECCCS--C-----CCSHHHHTTEEEEEEEEECS
T ss_pred             EECCCC--h-----HHHHHHHHHhccCCEEEEeC
Confidence            854421  1     12444568999999998754

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.20  E-value=0.0011  Score=63.00  Aligned_cols=97  Identities=16%  Similarity=0.223  Sum_probs=67.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc----ccc-cCc-CC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD----IMN-VSS-AL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD----a~~-l~~-~l  191 (318)
                      ..++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.++++     |..  ..+-..+    ..+ +.. ..
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~~Vi~~~~~~~~~~~~~~l-----Ga~--~vi~~~~~~~~~~~~~~~~~~  260 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHS--AGAKRIIAVDLNPDKFEKAKVF-----GAT--DFVNPNDHSEPISQVLSKMTN  260 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCGGGHHHHHHT-----TCC--EEECGGGCSSCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHh-----CCc--eEEeccccchhHHHHHHHHhC
Confidence            4678999999999999999999986  488 899999999998888753     321  1111111    111 000 01


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      +.+|+||-..  |     ....++...+.|+|| |+++.-.
T Consensus       261 ~g~D~vid~~--g-----~~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          261 GGVDFSLECV--G-----NVGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             SCBSEEEECS--C-----CHHHHHHHHHTBCTTTCEEEECS
T ss_pred             CCCCEEEECC--C-----CHHHHHHHHHHhhcCCcEEEEEc
Confidence            3699998554  2     123567778999999 9988755

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.20  E-value=0.00018  Score=68.74  Aligned_cols=103  Identities=19%  Similarity=0.252  Sum_probs=67.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|+.+|+|+.|..++.+++..  |++|+.+|++++..+.+++....      .+.....+..++......+|+|+.
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~DvVI~  236 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS------RVELLYSNSAEIETAVAEADLLIG  236 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG------GSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhCc------eeEeeeCCHHHHHHHHcCCCEEEE
Confidence            3569999999999999999888864  88999999999888887765432      222222222222222337999997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+++.... .-+.++..+.|+|||+++--.
T Consensus       237 ~~~~~~~~~~-~li~~~~~~~~~~g~~ivdv~  267 (361)
T 1pjc_A          237 AVLVPGRRAP-ILVPASLVEQMRTGSVIVDVA  267 (361)
T ss_dssp             CCCCTTSSCC-CCBCHHHHTTSCTTCEEEETT
T ss_pred             CCCcCCCCCC-eecCHHHHhhCCCCCEEEEEe
Confidence            7655331111 001334567899999887654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.18  E-value=0.0017  Score=60.01  Aligned_cols=153  Identities=12%  Similarity=0.062  Sum_probs=88.1

Q ss_pred             HHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCe---EE
Q 021008          104 IKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRM---FF  179 (318)
Q Consensus       104 ~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri---~f  179 (318)
                      .+|.++.-.    ....++.+|+|+||+|+|.|-. .|++  .+. .|.|.++-.+-     ..... ......+   .|
T Consensus        60 yKL~EIdeK----~likpg~~VVDLGaAPGGWSQv-Aa~~--~~vg~V~G~vig~D~-----~~~P~-~~~~~Gv~~i~~  126 (269)
T 2px2_A           60 AKLRWLVER----RFVQPIGKVVDLGCGRGGWSYY-AATM--KNVQEVRGYTKGGPG-----HEEPM-LMQSYGWNIVTM  126 (269)
T ss_dssp             HHHHHHHHT----TSCCCCEEEEEETCTTSHHHHH-HTTS--TTEEEEEEECCCSTT-----SCCCC-CCCSTTGGGEEE
T ss_pred             HHHHHHHHc----CCCCCCCEEEEcCCCCCHHHHH-Hhhh--cCCCCceeEEEcccc-----ccCCC-cccCCCceEEEe
Confidence            455555433    2348899999999999999853 4432  233 34555544321     00011 1111334   55


Q ss_pred             EEc-cccccCcCCCCccEEEecccc--CCChhHHH---HHHHHHHHhccCCe-EEEEEcCCCccc-c-------------
Q 021008          180 HTT-DIMNVSSALKDYEVVFLAALV--GMDKDEKI---RVIDHLAKYMAPGA-LLMLRSAHGARA-F-------------  238 (318)
Q Consensus       180 ~~g-Da~~l~~~l~~fD~V~~aalv--gm~~~~k~---~vl~~l~r~LkpGg-~lv~r~~~g~r~-~-------------  238 (318)
                      ..+ |..++.  -..+|+|+.+.--  |...-+-.   .+++-..+.|+||| .+++--..|... +             
T Consensus       127 ~~G~Df~~~~--~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~  204 (269)
T 2px2_A          127 KSGVDVFYKP--SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGG  204 (269)
T ss_dssp             ECSCCGGGSC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCC
T ss_pred             eccCCccCCC--CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcCC
Confidence            557 998853  2379999976422  32222222   35666668999999 898877555211 1             


Q ss_pred             --cccCCCccccCCcEEEEEEcCchhHHHHH-----HHHhhc
Q 021008          239 --LYPVVDPSDLLGFEVLSVFHPTDEVINSV-----VLARKY  273 (318)
Q Consensus       239 --lYP~v~~~~l~gf~~~~~~~p~~~VvNsv-----v~ark~  273 (318)
                        ..|+..  .-+..|++.+-...+.++++|     ++.++.
T Consensus       205 vkvk~paS--R~~S~E~YlVa~~~~n~~~~v~~~s~~l~~r~  244 (269)
T 2px2_A          205 GLVRVPLS--RNSNHEMYWVSGASGNIVHAVNMTSQVLIGRM  244 (269)
T ss_dssp             EEECCTTS--CTTCCCEEEETTCCSCHHHHHHHHHHHHHHTS
T ss_pred             EEEECCCC--CCCCccEEEEecccCcHHHHHHHHHHHHHHHh
Confidence              122211  122788888888888888888     655554

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.18  E-value=0.00032  Score=67.15  Aligned_cols=88  Identities=16%  Similarity=-0.007  Sum_probs=65.2

Q ss_pred             hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc
Q 021008          106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM  185 (318)
Q Consensus       106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~  185 (318)
                      |.+.-.+.|.   +.++..++|..+|.+|.|. .++++..++++|+|+|+|++|++.|+++      ..+|++++.++..
T Consensus        45 Ll~Evl~~L~---i~pggiyVD~TlG~GGHS~-~iL~~lg~~GrVig~D~Dp~Al~~A~rL------~~~Rv~lv~~nF~  114 (347)
T 3tka_A           45 LLDEAVNGLN---IRPDGIYIDGTFGRGGHSR-LILSQLGEEGRLLAIDRDPQAIAVAKTI------DDPRFSIIHGPFS  114 (347)
T ss_dssp             TTHHHHHHTC---CCTTCEEEESCCTTSHHHH-HHHTTCCTTCEEEEEESCHHHHHHHTTC------CCTTEEEEESCGG
T ss_pred             cHHHHHHhhC---CCCCCEEEEeCcCCCHHHH-HHHHhCCCCCEEEEEECCHHHHHHHHhh------cCCcEEEEeCCHH
Confidence            5555555543   4678999999999777775 5665555789999999999999999532      2479999999988


Q ss_pred             ccCc-----CCC-CccEEEecccc
Q 021008          186 NVSS-----ALK-DYEVVFLAALV  203 (318)
Q Consensus       186 ~l~~-----~l~-~fD~V~~aalv  203 (318)
                      ++..     .+. ++|.|+++--|
T Consensus       115 ~l~~~L~~~g~~~~vDgILfDLGV  138 (347)
T 3tka_A          115 ALGEYVAERDLIGKIDGILLDLGV  138 (347)
T ss_dssp             GHHHHHHHTTCTTCEEEEEEECSC
T ss_pred             HHHHHHHhcCCCCcccEEEECCcc
Confidence            7632     222 59988877655

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=97.16  E-value=0.00032  Score=66.71  Aligned_cols=95  Identities=17%  Similarity=0.192  Sum_probs=66.0

Q ss_pred             CCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-ccc-ccCc-CCCCccE
Q 021008          121 FPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIM-NVSS-ALKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~-~l~~-~l~~fD~  196 (318)
                      ++++||.+| +|++|..++.+|+.+ .|++|+++|.+++..+.++++     |..  ..+-.. |.. .+.. ..+.+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~-~g~~Vi~~~~~~~~~~~~~~l-----Gad--~vi~~~~~~~~~v~~~~~~g~Dv  242 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQR-TDLTVIATASRPETQEWVKSL-----GAH--HVIDHSKPLAAEVAALGLGAPAF  242 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHT-----TCS--EEECTTSCHHHHHHTTCSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHc-----CCC--EEEeCCCCHHHHHHHhcCCCceE
Confidence            678999999 999999999999852 589999999999988888653     321  111101 111 1111 1237999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      ||-..-       -...++...+.|+|||++++-
T Consensus       243 vid~~g-------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          243 VFSTTH-------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEECSC-------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             EEECCC-------chhhHHHHHHHhcCCCEEEEE
Confidence            985441       234677788999999999875

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.16  E-value=0.00035  Score=65.15  Aligned_cols=119  Identities=13%  Similarity=0.140  Sum_probs=70.2

Q ss_pred             HHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCC-eEEEE
Q 021008          103 YIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTR-MFFHT  181 (318)
Q Consensus       103 y~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~r-i~f~~  181 (318)
                      ..+|.++.-.    +...++.+|||+||||+|.+-.+ +++. +-..|+|+|+.......+.. ...   .+.+ +.|..
T Consensus        76 AfKL~ei~eK----~~Lk~~~~VLDLGaAPGGWsQvA-a~~~-gv~sV~GvdvG~d~~~~pi~-~~~---~g~~ii~~~~  145 (282)
T 3gcz_A           76 SAKLRWMEER----GYVKPTGIVVDLGCGRGGWSYYA-ASLK-NVKKVMAFTLGVQGHEKPIM-RTT---LGWNLIRFKD  145 (282)
T ss_dssp             HHHHHHHHHT----TSCCCCEEEEEETCTTCHHHHHH-HTST-TEEEEEEECCCCTTSCCCCC-CCB---TTGGGEEEEC
T ss_pred             HHHHHHHHHh----cCCCCCCEEEEeCCCCCHHHHHH-HHhc-CCCeeeeEEeccCccccccc-ccc---CCCceEEeeC
Confidence            3455554422    33477889999999999999643 3332 44579999998653221110 011   1223 33433


Q ss_pred             c-cccccCcCCCCccEEEecccc--CCChhHH---HHHHHHHHHhccCC--eEEEEEcCC
Q 021008          182 T-DIMNVSSALKDYEVVFLAALV--GMDKDEK---IRVIDHLAKYMAPG--ALLMLRSAH  233 (318)
Q Consensus       182 g-Da~~l~~~l~~fD~V~~aalv--gm~~~~k---~~vl~~l~r~LkpG--g~lv~r~~~  233 (318)
                      . |+.+++  ...+|+|+.+...  |...-+-   ..+++-..+.|+||  |.+++--..
T Consensus       146 ~~dv~~l~--~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          146 KTDVFNME--VIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             SCCGGGSC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             CcchhhcC--CCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            3 554543  2489999976432  3211121   23566667899999  999997766

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.15  E-value=0.00036  Score=64.26  Aligned_cols=95  Identities=14%  Similarity=0.107  Sum_probs=65.7

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ..++++||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.++++     |..  ..+-..+..++....+.+|+|
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~~-----ga~--~~~~~~~~~~~~~~~~~~d~v  193 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARA--MGLRVLAAASRPEKLALPLAL-----GAE--EAATYAEVPERAKAWGGLDLV  193 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHH--TTCEEEEEESSGGGSHHHHHT-----TCS--EEEEGGGHHHHHHHTTSEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHhc-----CCC--EEEECCcchhHHHHhcCceEE
Confidence            468899999997 8899999999986  489999999999888877652     321  111111101121122579999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +- +  |-      ..++...+.|+|||+++.-.
T Consensus       194 id-~--g~------~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          194 LE-V--RG------KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             EE-C--SC------TTHHHHHTTEEEEEEEEEC-
T ss_pred             EE-C--CH------HHHHHHHHhhccCCEEEEEe
Confidence            86 4  31      25677789999999988754

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.14  E-value=0.00066  Score=63.34  Aligned_cols=96  Identities=8%  Similarity=-0.004  Sum_probs=66.9

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc--ccc-cC--cCCC
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD--IMN-VS--SALK  192 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD--a~~-l~--~~l~  192 (318)
                      ..++++||.+| +|++|..++.+|+.  .|++|+++|.+++..+.++++     |.  ...+-..+  ..+ +.  ..-.
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~~-----ga--~~~~~~~~~~~~~~~~~~~~~~  216 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKM--KGAHTIAVASTDEKLKIAKEY-----GA--EYLINASKEDILRQVLKFTNGK  216 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHT-----TC--SEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHc-----CC--cEEEeCCCchHHHHHHHHhCCC
Confidence            36889999999 89999999999986  499999999999988877653     22  11121111  111 10  1123


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+|+-.+-      .  ..++...+.|+|||+++.-.
T Consensus       217 g~D~vid~~g------~--~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          217 GVDASFDSVG------K--DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             CEEEEEECCG------G--GGHHHHHHHEEEEEEEEECC
T ss_pred             CceEEEECCC------h--HHHHHHHHHhccCCEEEEEc
Confidence            6999986542      1  35677789999999998765

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.14  E-value=0.00021  Score=67.18  Aligned_cols=91  Identities=18%  Similarity=0.202  Sum_probs=64.9

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc---cc----cccCcCCC
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT---DI----MNVSSALK  192 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g---Da----~~l~~~l~  192 (318)
                      ++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.++++ ..      .  ++..   |.    .++.  -.
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~--~Ga~~Vi~~~~~~~~~~~~~~l-a~------~--v~~~~~~~~~~~~~~~~--~~  230 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRA--SGAGPILVSDPNPYRLAFARPY-AD------R--LVNPLEEDLLEVVRRVT--GS  230 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHH--TTCCSEEEECSCHHHHGGGTTT-CS------E--EECTTTSCHHHHHHHHH--SS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHh-HH------h--ccCcCccCHHHHHHHhc--CC
Confidence            78999999999999999999986  488 999999999887777654 21      1  1111   11    1111  13


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+||-..  | .    ...++...+.|+|||+++.-.
T Consensus       231 g~D~vid~~--g-~----~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          231 GVEVLLEFS--G-N----EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             CEEEEEECS--C-C----HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECC--C-C----HHHHHHHHHHHhcCCEEEEEe
Confidence            699998554  2 1    235677789999999988765

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.13  E-value=0.0013  Score=62.32  Aligned_cols=97  Identities=13%  Similarity=0.095  Sum_probs=67.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc----ccc-cCc-CC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD----IMN-VSS-AL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD----a~~-l~~-~l  191 (318)
                      ..++++||.+|+|++|..++.+|+..  |+ +|+++|.+++..+.++++     |..  ..+-..+    ..+ +.. ..
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~--Ga~~Vi~~~~~~~~~~~~~~l-----Ga~--~vi~~~~~~~~~~~~v~~~~~  258 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVA--GASRIIGVDINKDKFARAKEF-----GAT--ECINPQDFSKPIQEVLIEMTD  258 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHHH-----TCS--EEECGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc-----CCc--eEeccccccccHHHHHHHHhC
Confidence            46889999999999999999999864  88 899999999999988764     221  1111111    111 100 11


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      +.+|+||-..-.       ...++...+.|+|| |+++.-.
T Consensus       259 ~g~D~vid~~g~-------~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          259 GGVDYSFECIGN-------VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             SCBSEEEECSCC-------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             CCCCEEEECCCc-------HHHHHHHHHhhccCCcEEEEEe
Confidence            379999855421       23567778999999 9998755

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.13  E-value=0.0006  Score=63.49  Aligned_cols=96  Identities=14%  Similarity=0.041  Sum_probs=67.5

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc--cc----ccCcCC
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD--IM----NVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD--a~----~l~~~l  191 (318)
                      ..++++||.+| +|++|..++.+|+.  .|++|+++|.+++..+.++++-.       ...+-..+  ..    ++. .-
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~~Ga-------~~~~~~~~~~~~~~~~~~~-~~  207 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKA--LGAKLIGTVSSPEKAAHAKALGA-------WETIDYSHEDVAKRVLELT-DG  207 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHT-TT
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCC-------CEEEeCCCccHHHHHHHHh-CC
Confidence            36789999999 89999999999986  49999999999999888876421       11121111  11    111 11


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ..+|+|+-.+-      .  ..+....+.|+|||+++.-..
T Consensus       208 ~g~Dvvid~~g------~--~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          208 KKCPVVYDGVG------Q--DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             CCEEEEEESSC------G--GGHHHHHTTEEEEEEEEECCC
T ss_pred             CCceEEEECCC------h--HHHHHHHHHhcCCCEEEEEec
Confidence            37999986542      1  356677899999999988653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.12  E-value=0.00081  Score=61.75  Aligned_cols=102  Identities=19%  Similarity=0.203  Sum_probs=68.9

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC-------C-CCC--------CCeEEEEcccc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD-------P-DLS--------TRMFFHTTDIM  185 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-------~-gl~--------~ri~f~~gDa~  185 (318)
                      -++|..||+|.+|.........  .|..|+.+|++++.++.+++.+...       . ++.        .++++ ..|..
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~   80 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAF--HGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLA   80 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHH
Confidence            3699999999887764433333  4899999999999998887653210       0 111        12343 23332


Q ss_pred             ccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          186 NVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       186 ~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +   .....|+|+.+.-.  +.+.|..+++++.+.++||.+++-..
T Consensus        81 ~---~~~~aDlVi~av~~--~~~~~~~v~~~l~~~~~~~~il~s~t  121 (283)
T 4e12_A           81 Q---AVKDADLVIEAVPE--SLDLKRDIYTKLGELAPAKTIFATNS  121 (283)
T ss_dssp             H---HTTTCSEEEECCCS--CHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             H---HhccCCEEEEeccC--cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence            2   23578999987532  44688999999999999998876433

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.12  E-value=0.0015  Score=61.94  Aligned_cols=97  Identities=13%  Similarity=0.140  Sum_probs=66.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc----ccc-cCc-CC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD----IMN-VSS-AL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD----a~~-l~~-~l  191 (318)
                      ..++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.++++     |..  ..+-..+    ..+ +.. ..
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~~Vi~~~~~~~~~~~~~~l-----Ga~--~vi~~~~~~~~~~~~~~~~~~  259 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKA--AGAARIIGVDINKDKFAKAKEV-----GAT--ECVNPQDYKKPIQEVLTEMSN  259 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCGGGHHHHHHT-----TCS--EEECGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHh-----CCc--eEecccccchhHHHHHHHHhC
Confidence            4678999999999999999999986  488 899999999998888653     321  1111111    111 100 11


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      +.+|+||-..  | .    ...++...+.|++| |++++-.
T Consensus       260 ~g~D~vid~~--g-~----~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          260 GGVDFSFEVI--G-R----LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             SCBSEEEECS--C-C----HHHHHHHHHHBCTTTCEEEECS
T ss_pred             CCCcEEEECC--C-C----HHHHHHHHHHhhcCCcEEEEec
Confidence            3799998554  2 1    23567778999999 9988754

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.09  E-value=0.0022  Score=60.12  Aligned_cols=92  Identities=18%  Similarity=0.160  Sum_probs=62.7

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCc--EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTT--CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga--~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++|.+||+|.+|.+-....++  .|.  +|+++|.+++..+.+++     .|..++   ...|..++  .....|+|++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~--~G~~~~V~~~dr~~~~~~~a~~-----~G~~~~---~~~~~~~~--~~~~aDvVil  100 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRR--SGFKGKIYGYDINPESISKAVD-----LGIIDE---GTTSIAKV--EDFSPDFVML  100 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH--TTCCSEEEEECSCHHHHHHHHH-----TTSCSE---EESCTTGG--GGGCCSEEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHh--CCCCCEEEEEECCHHHHHHHHH-----CCCcch---hcCCHHHH--hhccCCEEEE
Confidence            3799999999888764333333  366  99999999988877653     233221   12333220  2347899998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +.    +.....++++++.+.++||.+|+-
T Consensus       101 av----p~~~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A          101 SS----PVRTFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             CS----CGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             eC----CHHHHHHHHHHHhhccCCCcEEEE
Confidence            76    345667899999999999987653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.08  E-value=0.0012  Score=54.74  Aligned_cols=99  Identities=19%  Similarity=0.127  Sum_probs=64.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc---cCc-CCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN---VSS-ALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~---l~~-~l~~fD  195 (318)
                      ..+++|+.+|+|++|......++.  .|..|+.+|.+++..+.++   ..     ....++.+|..+   +.. ....+|
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~~~~~~~~---~~-----~g~~~~~~d~~~~~~l~~~~~~~ad   86 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNEYAFHRLN---SE-----FSGFTVVGDAAEFETLKECGMEKAD   86 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCGGGGGGSC---TT-----CCSEEEESCTTSHHHHHTTTGGGCS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHH---hc-----CCCcEEEecCCCHHHHHHcCcccCC
Confidence            567899999999888776555554  4889999999987544321   02     234566777654   211 234799


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +|+++.-    .......+..+.+.+.|...++.+..
T Consensus        87 ~Vi~~~~----~~~~~~~~~~~~~~~~~~~~iv~~~~  119 (155)
T 2g1u_A           87 MVFAFTN----DDSTNFFISMNARYMFNVENVIARVY  119 (155)
T ss_dssp             EEEECSS----CHHHHHHHHHHHHHTSCCSEEEEECS
T ss_pred             EEEEEeC----CcHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            9987652    23334455556677777777777663

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.08  E-value=0.00029  Score=66.32  Aligned_cols=95  Identities=9%  Similarity=0.051  Sum_probs=66.0

Q ss_pred             CCCEEEEE-ccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE-ccccc-cC-cCCCCccE
Q 021008          121 FPTKIAFI-GSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT-TDIMN-VS-SALKDYEV  196 (318)
Q Consensus       121 ~~~rVL~I-GsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~-gDa~~-l~-~~l~~fD~  196 (318)
                      ++++||.+ |+|++|..++.+|+.  .|++|+++|.+++..+.++++-..      . .+-. .|..+ +. .....||+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~lGa~------~-vi~~~~~~~~~~~~~~~~g~Dv  220 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKA--YGLRVITTASRNETIEWTKKMGAD------I-VLNHKESLLNQFKTQGIELVDY  220 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH--TTCEEEEECCSHHHHHHHHHHTCS------E-EECTTSCHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhcCCc------E-EEECCccHHHHHHHhCCCCccE
Confidence            78999999 799999999999986  499999999999998888874221      1 1100 01111 10 11237999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+-..-       ....++...+.|+|||+++.-.
T Consensus       221 v~d~~g-------~~~~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          221 VFCTFN-------TDMYYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             EEESSC-------HHHHHHHHHHHEEEEEEEEESS
T ss_pred             EEECCC-------chHHHHHHHHHhccCCEEEEEC
Confidence            986541       2346677789999999997643

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.08  E-value=0.00037  Score=66.26  Aligned_cols=98  Identities=15%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             cC-CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008          119 SR-FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       119 ~~-~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      .. ++++||.+|+|++|..++.+|+.  .|++|+++|.+++..+.+++   + .|.  ...+-..+...+....+.+|+|
T Consensus       184 ~~~~g~~VlV~GaG~vG~~~~q~a~~--~Ga~Vi~~~~~~~~~~~~~~---~-lGa--~~v~~~~~~~~~~~~~~~~D~v  255 (366)
T 1yqd_A          184 LDEPGKHIGIVGLGGLGHVAVKFAKA--FGSKVTVISTSPSKKEEALK---N-FGA--DSFLVSRDQEQMQAAAGTLDGI  255 (366)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCGGGHHHHHH---T-SCC--SEEEETTCHHHHHHTTTCEEEE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH---h-cCC--ceEEeccCHHHHHHhhCCCCEE
Confidence            35 88999999999999999999986  48999999999988777652   2 332  1112111111111112479999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +-..-.  +.     .++...+.|++||+++.-.
T Consensus       256 id~~g~--~~-----~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          256 IDTVSA--VH-----PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             EECCSS--CC-----CSHHHHHHEEEEEEEEECC
T ss_pred             EECCCc--HH-----HHHHHHHHHhcCCEEEEEc
Confidence            855421  11     2344568899999988755

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.07  E-value=0.0011  Score=62.78  Aligned_cols=96  Identities=11%  Similarity=0.045  Sum_probs=67.0

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE--ccccc-cCc-CCCC
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT--TDIMN-VSS-ALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~--gDa~~-l~~-~l~~  193 (318)
                      ..++++||.+| +|++|..++.+|+.  .|++|+++|.+++..+.++++     |.  ...+-.  .|..+ +.. .-..
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~--~Ga~Vi~~~~~~~~~~~~~~~-----Ga--~~~~~~~~~~~~~~~~~~~~~g  231 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKK--AKCHVIGTCSSDEKSAFLKSL-----GC--DRPINYKTEPVGTVLKQEYPEG  231 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHT-----TC--SEEEETTTSCHHHHHHHHCTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHc-----CC--cEEEecCChhHHHHHHHhcCCC
Confidence            46889999999 79999999999986  499999999999888887653     32  111111  11111 100 1136


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+|+-.+  |    .  ..++...+.|++||++++-.
T Consensus       232 ~D~vid~~--g----~--~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          232 VDVVYESV--G----G--AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             EEEEEECS--C----T--HHHHHHHHHEEEEEEEEECC
T ss_pred             CCEEEECC--C----H--HHHHHHHHHHhcCCEEEEEe
Confidence            99998654  2    1  36777889999999988755

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.05  E-value=0.0037  Score=58.91  Aligned_cols=100  Identities=15%  Similarity=0.173  Sum_probs=66.2

Q ss_pred             cCCCCEEEEEcc----CCChHHHHHHHHhCCC-CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCC
Q 021008          119 SRFPTKIAFIGS----GPLPLTSIVLAINHLT-TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGs----Gplp~tai~LA~~~~~-ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~  193 (318)
                      .+.+.|||++|+    |.-|.| ..+.+. +| |+.|+++|+.+-.         .    ... .|++||..++.. .+.
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS-~VLr~~-~p~g~~VVavDL~~~~---------s----da~-~~IqGD~~~~~~-~~k  169 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGT-AVLRQW-LPTGTLLVDSDLNDFV---------S----DAD-STLIGDCATVHT-ANK  169 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH-HHHHHH-SCTTCEEEEEESSCCB---------C----SSS-EEEESCGGGEEE-SSC
T ss_pred             ecCCCEEEeCCCCCCCCCCCcH-HHHHHh-CCCCcEEEEeeCcccc---------c----CCC-eEEEcccccccc-CCC
Confidence            478899999997    335666 355544 56 4799999998821         1    122 569999877543 358


Q ss_pred             ccEEEecccc---CC-Ch------hHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          194 YEVVFLAALV---GM-DK------DEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       194 fD~V~~aalv---gm-~~------~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                      ||+|+.+.--   |. +.      .--+.+++-+.++|+|||.|++--..|-
T Consensus       170 ~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs  221 (344)
T 3r24_A          170 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS  221 (344)
T ss_dssp             EEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred             CCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence            9999965422   22 11      1123455556778999999999875554

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.04  E-value=0.00035  Score=65.22  Aligned_cols=95  Identities=12%  Similarity=0.074  Sum_probs=66.4

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc--cc----ccCcCC
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD--IM----NVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD--a~----~l~~~l  191 (318)
                      ..++++||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.+.   ++ .|.  ...+-..+  ..    ++.  .
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~---~~-~g~--~~~~~~~~~~~~~~~~~~~--~  216 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARL--KGCRVVGIAGGAEKCRFLV---EE-LGF--DGAIDYKNEDLAAGLKREC--P  216 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHH---HT-TCC--SEEEETTTSCHHHHHHHHC--T
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHH---HH-cCC--CEEEECCCHHHHHHHHHhc--C
Confidence            478899999998 8899999999986  4999999999998877762   22 333  11121111  11    111  1


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.+|+|+-.+  |    .  ..++...+.|+|||+++.-.
T Consensus       217 ~~~d~vi~~~--g----~--~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          217 KGIDVFFDNV--G----G--EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             TCEEEEEESS--C----H--HHHHHHHTTEEEEEEEEECC
T ss_pred             CCceEEEECC--C----c--chHHHHHHHHhhCCEEEEEe
Confidence            3699998654  1    1  36788889999999998755

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.04  E-value=0.0017  Score=60.10  Aligned_cols=46  Identities=13%  Similarity=-0.125  Sum_probs=40.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~  169 (318)
                      .++..|||++||. |.+++..++   .|.+++|+|+++++++.|++.++.
T Consensus       234 ~~~~~vlD~f~Gs-Gt~~~~a~~---~g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          234 FVGDVVLDPFAGT-GTTLIAAAR---WGRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             CTTCEEEETTCTT-THHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCC-CHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHH
Confidence            6789999999994 778777665   489999999999999999998876

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.03  E-value=0.00022  Score=61.28  Aligned_cols=97  Identities=8%  Similarity=0.048  Sum_probs=64.8

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc--ccc-cC--cCCC
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD--IMN-VS--SALK  192 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD--a~~-l~--~~l~  192 (318)
                      ..++++||.+| +|++|..+..+++.  .|++|+++|.+++..+.+++     .|.  ...+-..+  ..+ +.  ....
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~--~G~~V~~~~~~~~~~~~~~~-----~g~--~~~~d~~~~~~~~~~~~~~~~~  106 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKM--IGARIYTTAGSDAKREMLSR-----LGV--EYVGDSRSVDFADEILELTDGY  106 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHT-----TCC--SEEEETTCSTHHHHHHHHTTTC
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH-----cCC--CEEeeCCcHHHHHHHHHHhCCC
Confidence            36789999999 68789888888875  38999999999987776643     232  11121111  100 10  0113


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .+|+|+..+  |      ...++...+.|+|||+++.-..
T Consensus       107 ~~D~vi~~~--g------~~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          107 GVDVVLNSL--A------GEAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             CEEEEEECC--C------THHHHHHHHTEEEEEEEEECSC
T ss_pred             CCeEEEECC--c------hHHHHHHHHHhccCCEEEEEcC
Confidence            699998654  2      1357778899999999987653

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=97.01  E-value=0.0068  Score=59.82  Aligned_cols=99  Identities=17%  Similarity=0.252  Sum_probs=66.8

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc------------CCCC-CCCeEEEEccccccC
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS------------DPDL-STRMFFHTTDIMNVS  188 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~------------~~gl-~~ri~f~~gDa~~l~  188 (318)
                      -++|..||+|.+|.........  .|..|+.+|++++.++.+++....            .... ....++ +.|..   
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~--~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~---  110 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFAR--VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTK---  110 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGG---
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHH---
Confidence            4689999999887654332222  488999999999999887653220            0001 112333 44432   


Q ss_pred             cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          189 SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       189 ~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                       .....|+|+.+..-  +..-|..+++++...++||.+|+.
T Consensus       111 -~~~~aDlVIeaVpe--~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          111 -ELSTVDLVVEAVFE--DMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             -GGTTCSEEEECCCS--CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             -HHCCCCEEEEcCCC--CHHHHHHHHHHHHhhCCCCeEEEe
Confidence             34579999987632  445688999999999999988876

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=97.01  E-value=0.00025  Score=67.07  Aligned_cols=94  Identities=16%  Similarity=0.139  Sum_probs=63.1

Q ss_pred             CEEEEEccCCChHHH-HHHH-HhCCCCcE-EEEEeCChH---HHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccE
Q 021008          123 TKIAFIGSGPLPLTS-IVLA-INHLTTTC-FDNYDIDPS---ANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA-~~~~~ga~-V~gvDid~~---ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      ++||.+|+|++|+.+ +.+| +.  .|++ |+++|.+++   ..+.++++     |. +.+.+...|..++....+.||+
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~--~Ga~~Vi~~~~~~~~~~~~~~~~~l-----Ga-~~v~~~~~~~~~i~~~~gg~Dv  245 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDD--KGYENLYCLGRRDRPDPTIDIIEEL-----DA-TYVDSRQTPVEDVPDVYEQMDF  245 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCT--TCCCEEEEEECCCSSCHHHHHHHHT-----TC-EEEETTTSCGGGHHHHSCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHH--cCCcEEEEEeCCcccHHHHHHHHHc-----CC-cccCCCccCHHHHHHhCCCCCE
Confidence            999999999999999 9999 74  4887 999999998   78887653     32 1110000111111000127999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||-..  | .    ...++...+.|+|||+++.-.
T Consensus       246 vid~~--g-~----~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          246 IYEAT--G-F----PKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             EEECS--C-C----HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEECC--C-C----hHHHHHHHHHHhcCCEEEEEe
Confidence            98554  2 1    235677789999999998765

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=97.00  E-value=0.0007  Score=63.23  Aligned_cols=99  Identities=16%  Similarity=0.142  Sum_probs=67.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc---CcCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV---SSALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l---~~~l~~f  194 (318)
                      ..++++||.+|+|++|..++.+|+..  |+ .++++|.+++..++|+++     |...-+.+...|..+.   ..+...+
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~--G~~~vi~~~~~~~k~~~a~~l-----Ga~~~i~~~~~~~~~~~~~~~~~~g~  230 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDISSEKLALAKSF-----GAMQTFNSSEMSAPQMQSVLRELRFN  230 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT-----TCSEEEETTTSCHHHHHHHHGGGCSS
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHc--CCcEEEEEechHHHHHHHHHc-----CCeEEEeCCCCCHHHHHHhhcccCCc
Confidence            47889999999999999999999864  65 568999999988888764     3222222211221111   1123468


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+-..-       ....++...+.++|||++++-.
T Consensus       231 d~v~d~~G-------~~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          231 QLILETAG-------VPQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             EEEEECSC-------SHHHHHHHHHHCCTTCEEEECC
T ss_pred             cccccccc-------ccchhhhhhheecCCeEEEEEe
Confidence            88885542       1345677789999999998765

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.00  E-value=0.0071  Score=56.83  Aligned_cols=107  Identities=14%  Similarity=0.150  Sum_probs=77.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC--CCCCeEEEEccccc-cCcCC--CCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD--LSTRMFFHTTDIMN-VSSAL--KDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g--l~~ri~f~~gDa~~-l~~~l--~~f  194 (318)
                      ..++.|+.+||| ++..+..+..  ..+++|.-|| .|++++..++++.. .|  ...+..++.+|+.+ +...+  ..|
T Consensus       101 ~g~~QvV~LGaG-lDTra~Rl~~--~~~~~v~evD-~P~vi~~k~~lL~~-~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~  175 (310)
T 2uyo_A          101 DGIRQFVILASG-LDSRAYRLDW--PTGTTVYEID-QPKVLAYKSTTLAE-HGVTPTADRREVPIDLRQDWPPALRSAGF  175 (310)
T ss_dssp             TTCCEEEEETCT-TCCHHHHSCC--CTTCEEEEEE-CHHHHHHHHHHHHH-TTCCCSSEEEEEECCTTSCHHHHHHHTTC
T ss_pred             hCCCeEEEeCCC-CCchhhhccC--CCCcEEEEcC-CHHHHHHHHHHHHh-cCCCCCCCeEEEecchHhhHHHHHHhccC
Confidence            456799999999 7777554431  2368999999 79999999999975 33  35788999999886 10111  234


Q ss_pred             c----EEEe-cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 E----VVFL-AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D----~V~~-aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |    ++|+ .+++ -++.++-.++++.+.....||+.|++..
T Consensus       176 d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~  218 (310)
T 2uyo_A          176 DPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET  218 (310)
T ss_dssp             CTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence            4    4443 3333 4467778899999999999999999876

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.99  E-value=0.00041  Score=66.40  Aligned_cols=103  Identities=15%  Similarity=0.191  Sum_probs=65.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+++|+.+|+|++|..+..+++.  .|++|+.+|++++..+.+++..    |  ..+.....+..++......+|+|+.
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~--~Ga~V~~~d~~~~~~~~~~~~~----g--~~~~~~~~~~~~l~~~~~~~DvVi~  235 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALG--MGAQVTILDVNHKRLQYLDDVF----G--GRVITLTATEANIKKSVQHADLLIG  235 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHT----T--TSEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHhc----C--ceEEEecCCHHHHHHHHhCCCEEEE
Confidence            457999999999999998888876  4899999999998777665432    2  2232222222222222346899987


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+..... ....-+.++..+.|+|||+++.-.
T Consensus       236 ~~g~~~~-~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          236 AVLVPGA-KAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CCC--------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCCCCcc-ccchhHHHHHHHhhcCCCEEEEEe
Confidence            6643210 111113456678999999887655

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.97  E-value=0.0083  Score=47.66  Aligned_cols=96  Identities=18%  Similarity=0.111  Sum_probs=60.2

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~  196 (318)
                      ..++|+.+|+|.+|........+  .|..|+.+|.+++..+..++   . .    .+.++.+|..+..    .....+|+
T Consensus         3 ~~m~i~IiG~G~iG~~~a~~L~~--~g~~v~~~d~~~~~~~~~~~---~-~----~~~~~~~d~~~~~~l~~~~~~~~d~   72 (140)
T 1lss_A            3 HGMYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDKDICKKASA---E-I----DALVINGDCTKIKTLEDAGIEDADM   72 (140)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH---H-C----SSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHH---h-c----CcEEEEcCCCCHHHHHHcCcccCCE
Confidence            35799999999877665433333  48899999999976654432   2 1    2456778775421    12457999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |++..    +.......+..+.+.+.++ .++++.
T Consensus        73 vi~~~----~~~~~~~~~~~~~~~~~~~-~ii~~~  102 (140)
T 1lss_A           73 YIAVT----GKEEVNLMSSLLAKSYGIN-KTIARI  102 (140)
T ss_dssp             EEECC----SCHHHHHHHHHHHHHTTCC-CEEEEC
T ss_pred             EEEee----CCchHHHHHHHHHHHcCCC-EEEEEe
Confidence            98774    2223344566677788886 455544

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.95  E-value=0.0041  Score=50.34  Aligned_cols=96  Identities=13%  Similarity=0.004  Sum_probs=63.5

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEE
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVV  197 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V  197 (318)
                      .++|+.+|+|.+|........+  .|..|+++|.|++.++.+++         ..+.++.+|+.+..    ....++|+|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~--~g~~V~~id~~~~~~~~~~~---------~~~~~~~gd~~~~~~l~~~~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTA--AGKKVLAVDKSKEKIELLED---------EGFDAVIADPTDESFYRSLDLEGVSAV   74 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHH---------TTCEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHH---------CCCcEEECCCCCHHHHHhCCcccCCEE
Confidence            4689999999877665444333  48999999999988776543         12578889987631    123478988


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ++..-   +. +....+...++.+. ...++.+..+
T Consensus        75 i~~~~---~~-~~n~~~~~~a~~~~-~~~iia~~~~  105 (141)
T 3llv_A           75 LITGS---DD-EFNLKILKALRSVS-DVYAIVRVSS  105 (141)
T ss_dssp             EECCS---CH-HHHHHHHHHHHHHC-CCCEEEEESC
T ss_pred             EEecC---CH-HHHHHHHHHHHHhC-CceEEEEEcC
Confidence            86541   22 33344555666777 6677776643

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.95  E-value=0.0098  Score=57.69  Aligned_cols=106  Identities=8%  Similarity=-0.087  Sum_probs=69.4

Q ss_pred             CCEEEEEccCCChHHHHHHHH-------h--------CCCCcEEEEEeCC-----------hHHHHHHHHHhhcCCCCCC
Q 021008          122 PTKIAFIGSGPLPLTSIVLAI-------N--------HLTTTCFDNYDID-----------PSANSKALSLVSSDPDLST  175 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~-------~--------~~~ga~V~gvDid-----------~~ai~~Ar~~~~~~~gl~~  175 (318)
                      +-+|+|+|||.+|.|.+.+..       +        ..|..+|..-|+-           |...+..++   . .|...
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~-~g~~~  128 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---E-NGRKI  128 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---H-TCCCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---h-ccCCC
Confidence            679999999988888765554       0        1367889999987           544443322   2 23223


Q ss_pred             CeEEEEccccc---cCcCCCCccEEEeccccCC-Chh-------------------------------------HHHHHH
Q 021008          176 RMFFHTTDIMN---VSSALKDYEVVFLAALVGM-DKD-------------------------------------EKIRVI  214 (318)
Q Consensus       176 ri~f~~gDa~~---l~~~l~~fD~V~~aalvgm-~~~-------------------------------------~k~~vl  214 (318)
                      +-.|+.|....   -.+..++||+||..+-++| ...                                     +...+|
T Consensus       129 ~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL  208 (384)
T 2efj_A          129 GSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFL  208 (384)
T ss_dssp             TSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45788887765   3455679999996554433 211                                     112347


Q ss_pred             HHHHHhccCCeEEEEEc
Q 021008          215 DHLAKYMAPGALLMLRS  231 (318)
Q Consensus       215 ~~l~r~LkpGg~lv~r~  231 (318)
                      +..++.|+|||++++-.
T Consensus       209 ~~Ra~eL~pGG~mvl~~  225 (384)
T 2efj_A          209 RIHSEELISRGRMLLTF  225 (384)
T ss_dssp             HHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhccCCeEEEEE
Confidence            77899999999998865

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=96.95  E-value=0.0023  Score=59.24  Aligned_cols=91  Identities=12%  Similarity=0.126  Sum_probs=63.7

Q ss_pred             EEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEEEecc
Q 021008          124 KIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVVFLAA  201 (318)
Q Consensus       124 rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V~~aa  201 (318)
                      +||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.++++     |.  ...+-..+...+.. ..+.+|+||-..
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~--~Ga~Vi~~~~~~~~~~~~~~l-----Ga--~~vi~~~~~~~~~~~~~~~~d~v~d~~  219 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHK--LGYQVAAVSGRESTHGYLKSL-----GA--NRILSRDEFAESRPLEKQLWAGAIDTV  219 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHH--TTCCEEEEESCGGGHHHHHHH-----TC--SEEEEGGGSSCCCSSCCCCEEEEEESS
T ss_pred             eEEEECCCcHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhc-----CC--CEEEecCCHHHHHhhcCCCccEEEECC
Confidence            4999997 9999999999986  499999999999999888764     21  11121111111110 113799887443


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                        |    .  ..++...+.|+|||+++.-.
T Consensus       220 --g----~--~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          220 --G----D--KVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             --C----H--HHHHHHHHTEEEEEEEEECC
T ss_pred             --C----c--HHHHHHHHHHhcCCEEEEEe
Confidence              2    1  27888889999999998765

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=96.94  E-value=0.0032  Score=60.92  Aligned_cols=111  Identities=11%  Similarity=-0.013  Sum_probs=68.1

Q ss_pred             CCCEEEEEccCCChHHHHHHH-------HhC------CCCcEEEEEeCCh-HHHHHHHHHhhcC---------CCCCCCe
Q 021008          121 FPTKIAFIGSGPLPLTSIVLA-------INH------LTTTCFDNYDIDP-SANSKALSLVSSD---------PDLSTRM  177 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA-------~~~------~~ga~V~gvDid~-~ai~~Ar~~~~~~---------~gl~~ri  177 (318)
                      .+.+|+|+|||.+|.|...+.       +++      .|..+|.--|+-. +.+.+-+.+....         .+.+.+-
T Consensus        52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~  131 (374)
T 3b5i_A           52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS  131 (374)
T ss_dssp             CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred             CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence            368999999998888765421       111      2678888888654 3334444433210         0111133


Q ss_pred             EEEEccccc---cCcCCCCccEEEecccc-CCCh------------------------------------hHHHHHHHHH
Q 021008          178 FFHTTDIMN---VSSALKDYEVVFLAALV-GMDK------------------------------------DEKIRVIDHL  217 (318)
Q Consensus       178 ~f~~gDa~~---l~~~l~~fD~V~~aalv-gm~~------------------------------------~~k~~vl~~l  217 (318)
                      .|+.|....   -.+..++||+|+...-+ ++.+                                    .+...+|+..
T Consensus       132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r  211 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR  211 (374)
T ss_dssp             SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            466665543   23456799999965434 3331                                    1556689999


Q ss_pred             HHhccCCeEEEEEc
Q 021008          218 AKYMAPGALLMLRS  231 (318)
Q Consensus       218 ~r~LkpGg~lv~r~  231 (318)
                      ++.|+|||++++-.
T Consensus       212 a~eL~pGG~mvl~~  225 (374)
T 3b5i_A          212 AAEVKRGGAMFLVC  225 (374)
T ss_dssp             HHHEEEEEEEEEEE
T ss_pred             HHHhCCCCEEEEEE
Confidence            99999999998855

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.92  E-value=0.00055  Score=65.10  Aligned_cols=97  Identities=10%  Similarity=0.022  Sum_probs=62.9

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc--cccccCcCCCCcc
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT--DIMNVSSALKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g--Da~~l~~~l~~fD  195 (318)
                      ..++++||.+| +|++|..++.+|+.  .|++|++++ +++..+.+++     .|.  ...+-..  |..+.......+|
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~--~Ga~Vi~~~-~~~~~~~~~~-----lGa--~~v~~~~~~~~~~~~~~~~g~D  250 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKA--WDAHVTAVC-SQDASELVRK-----LGA--DDVIDYKSGSVEEQLKSLKPFD  250 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEE-CGGGHHHHHH-----TTC--SEEEETTSSCHHHHHHTSCCBS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHh--CCCEEEEEe-ChHHHHHHHH-----cCC--CEEEECCchHHHHHHhhcCCCC
Confidence            35789999999 79999999999986  489999999 7766666643     332  1112111  1111001224799


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +||-.+  |-    ....+....+.+++||+++.-.
T Consensus       251 ~vid~~--g~----~~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          251 FILDNV--GG----STETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             EEEESS--CT----THHHHGGGGBCSSSCCEEEESC
T ss_pred             EEEECC--CC----hhhhhHHHHHhhcCCcEEEEeC
Confidence            998554  21    1123456678899999998754

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.00096  Score=62.64  Aligned_cols=94  Identities=14%  Similarity=0.067  Sum_probs=65.8

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc---ccC---cC-
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM---NVS---SA-  190 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~---~l~---~~-  190 (318)
                      ..++++||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.++++     |.  ...+   |..   ++.   .. 
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~--~Ga~V~~~~~~~~~~~~~~~~-----g~--~~~~---d~~~~~~~~~~~~~~  234 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKA--MGYRVLGIDGGEGKEELFRSI-----GG--EVFI---DFTKEKDIVGAVLKA  234 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEECSTTHHHHHHHT-----TC--CEEE---ETTTCSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHH--CCCcEEEEcCCHHHHHHHHHc-----CC--ceEE---ecCccHhHHHHHHHH
Confidence            468899999998 7789998888886  489999999999888777652     32  1111   222   110   00 


Q ss_pred             -CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 -LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 -l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       .+.+|+|+..+-.       ...++...+.|++||+++.-.
T Consensus       235 ~~~~~D~vi~~~g~-------~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          235 TDGGAHGVINVSVS-------EAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             HTSCEEEEEECSSC-------HHHHHHHTTSEEEEEEEEECC
T ss_pred             hCCCCCEEEECCCc-------HHHHHHHHHHHhcCCEEEEEe
Confidence             0169999866521       246778889999999998765

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.89  E-value=0.0044  Score=57.12  Aligned_cols=98  Identities=16%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             CCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhh-------cCCCC-C-------------CCeEE
Q 021008          122 PTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVS-------SDPDL-S-------------TRMFF  179 (318)
Q Consensus       122 ~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~-------~~~gl-~-------------~ri~f  179 (318)
                      -++|.+||+|.+|.+. ..+++   .|..|+.+|++++.++.+++.+.       + .|. .             .++++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~---~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~-~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAA---TGHTVVLVDQTEDILAKSKKGIEESLRKVAK-KKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHHHHHHH-TTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHH-cCCCCccccchhhHHHHHhceEE
Confidence            3689999999887743 44554   38899999999999888754321       1 121 1             14554


Q ss_pred             EEccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          180 HTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       180 ~~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      . .|..+   .....|+|+++.--  +...|..+++++.+.++||.+|+.
T Consensus        91 ~-~~~~~---~~~~aD~Vi~avp~--~~~~~~~v~~~l~~~~~~~~iv~s  134 (302)
T 1f0y_A           91 S-TDAAS---VVHSTDLVVEAIVE--NLKVKNELFKRLDKFAAEHTIFAS  134 (302)
T ss_dssp             E-SCHHH---HTTSCSEEEECCCS--CHHHHHHHHHHHTTTSCTTCEEEE
T ss_pred             e-cCHHH---hhcCCCEEEEcCcC--cHHHHHHHHHHHHhhCCCCeEEEE
Confidence            2 33321   23478999987521  334578899999999999887654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.87  E-value=0.0011  Score=62.15  Aligned_cols=95  Identities=13%  Similarity=0.075  Sum_probs=66.2

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc--ccc-cC--cCCC
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD--IMN-VS--SALK  192 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD--a~~-l~--~~l~  192 (318)
                      ..++++||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.++++-..       . ++..+  ..+ +.  ..-.
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~~ga~-------~-v~~~~~~~~~~v~~~~~~~  226 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKG--MGAKVIAVVNRTAATEFVKSVGAD-------I-VLPLEEGWAKAVREATGGA  226 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHHTCS-------E-EEESSTTHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhcCCc-------E-EecCchhHHHHHHHHhCCC
Confidence            468899999997 9999999999986  499999999999998888764221       1 11111  111 10  1112


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+||-.+-.        ..++...+.|+|||++++-.
T Consensus       227 g~Dvvid~~g~--------~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          227 GVDMVVDPIGG--------PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             CEEEEEESCC----------CHHHHHHTEEEEEEEEEC-
T ss_pred             CceEEEECCch--------hHHHHHHHhhcCCCEEEEEE
Confidence            69999865421        15677789999999998765

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.87  E-value=0.002  Score=60.31  Aligned_cols=96  Identities=14%  Similarity=0.034  Sum_probs=66.1

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc--cccc-cC--cCCC
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT--DIMN-VS--SALK  192 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g--Da~~-l~--~~l~  192 (318)
                      ..++++||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.++++     |. + ..+-..  |..+ +.  ..-.
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~--~G~~Vi~~~~~~~~~~~~~~~-----ga-~-~~~d~~~~~~~~~~~~~~~~~  234 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKL--FGARVIATAGSEDKLRRAKAL-----GA-D-ETVNYTHPDWPKEVRRLTGGK  234 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHH-----TC-S-EEEETTSTTHHHHHHHHTTTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHhc-----CC-C-EEEcCCcccHHHHHHHHhCCC
Confidence            367899999999 8899999999986  489999999999988888653     21 1 111111  1100 10  1113


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+|+-.+- +       ..++...+.|++||+++.-.
T Consensus       235 ~~d~vi~~~g-~-------~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          235 GADKVVDHTG-A-------LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             CEEEEEESSC-S-------SSHHHHHHHEEEEEEEEESS
T ss_pred             CceEEEECCC-H-------HHHHHHHHhhccCCEEEEEe
Confidence            7999986652 1       24666778999999998765

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.86  E-value=0.00047  Score=66.40  Aligned_cols=109  Identities=17%  Similarity=0.214  Sum_probs=64.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC--CCCC------------CeE--EEEcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP--DLST------------RMF--FHTTD  183 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~--gl~~------------ri~--f~~gD  183 (318)
                      .++++|+.+|+|+.|..++.+|+.+  |++|+.+|++++..+.++++-....  ...+            .+.  +...+
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~  247 (384)
T 1l7d_A          170 VPPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  247 (384)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhh
Confidence            3789999999999999999999864  8999999999987777655211100  0000            000  00000


Q ss_pred             ccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          184 IMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       184 a~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+......+|+|+...+++....+ .-+.++..+.||||++++--.
T Consensus       248 ~~~l~~~~~~aDvVi~~~~~pg~~~~-~li~~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          248 AEAVLKELVKTDIAITTALIPGKPAP-VLITEEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTSCCC-CCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHhCCCCEEEECCccCCCCCC-eeeCHHHHhcCCCCCEEEEEe
Confidence            00021122478999977755221111 112255668899999876544

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=96.84  E-value=0.0034  Score=61.35  Aligned_cols=98  Identities=10%  Similarity=0.070  Sum_probs=67.4

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc-------------
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI-------------  184 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa-------------  184 (318)
                      ..++++||.+|+ |++|+.++.+|+.  .|++|++++.+++..+.++++-..     .-+.....|.             
T Consensus       226 ~~~g~~VlV~GasG~vG~~avqlak~--~Ga~vi~~~~~~~~~~~~~~lGa~-----~vi~~~~~d~~~~~~~~~~~~~~  298 (456)
T 3krt_A          226 MKQGDNVLIWGASGGLGSYATQFALA--GGANPICVVSSPQKAEICRAMGAE-----AIIDRNAEGYRFWKDENTQDPKE  298 (456)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHTCC-----EEEETTTTTCCSEEETTEECHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHH--cCCeEEEEECCHHHHHHHHhhCCc-----EEEecCcCcccccccccccchHH
Confidence            478899999998 9999999999986  499999999999998888764221     1111101110             


Q ss_pred             -----cccC--cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          185 -----MNVS--SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       185 -----~~l~--~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                           ..+.  ..-..+|+||-..  |    .  ..+....+.|+|||+++.-.
T Consensus       299 ~~~~~~~i~~~t~g~g~Dvvid~~--G----~--~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          299 WKRFGKRIRELTGGEDIDIVFEHP--G----R--ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEEECS--C----H--HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEcC--C----c--hhHHHHHHHhhCCcEEEEEe
Confidence                 0110  1113799998554  2    1  46777889999999998754

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=96.83  E-value=0.0039  Score=62.11  Aligned_cols=100  Identities=27%  Similarity=0.272  Sum_probs=69.5

Q ss_pred             CCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc----C--CCC-C--------CCeEEEEcccc
Q 021008          122 PTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSS----D--PDL-S--------TRMFFHTTDIM  185 (318)
Q Consensus       122 ~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~----~--~gl-~--------~ri~f~~gDa~  185 (318)
                      -++|.+||+|.+|.+- ..+++   .|..|+.+|+|++.++.+++.+.+    .  .|. .        .++++. .|..
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~   80 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAAS---HGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TDIH   80 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CCGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CCHH
Confidence            4689999999887763 44554   488999999999999998764211    0  111 1        145543 2322


Q ss_pred             ccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          186 NVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       186 ~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                          .....|+|+.+...  +..-|..+++++.+.++||.+|+...
T Consensus        81 ----~~~~aDlVIeAVpe--~~~vk~~v~~~l~~~~~~~~Ilasnt  120 (483)
T 3mog_A           81 ----ALAAADLVIEAASE--RLEVKKALFAQLAEVCPPQTLLTTNT  120 (483)
T ss_dssp             ----GGGGCSEEEECCCC--CHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ----HhcCCCEEEEcCCC--cHHHHHHHHHHHHHhhccCcEEEecC
Confidence                33478999977532  45678899999999999999886643

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.83  E-value=0.0014  Score=61.31  Aligned_cols=95  Identities=8%  Similarity=-0.022  Sum_probs=64.4

Q ss_pred             cCCCCEEEEEccC-CChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc--ccc----ccCcCC
Q 021008          119 SRFPTKIAFIGSG-PLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT--DIM----NVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsG-plp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g--Da~----~l~~~l  191 (318)
                      ..++++||.+|+| ++|..++.+|+..  |++|+++|.+++..+.++++-..       ..+-..  |..    ++. .-
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~lga~-------~~~~~~~~~~~~~~~~~~-~~  211 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLRLGAA-------YVIDTSTAPLYETVMELT-NG  211 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHHTCS-------EEEETTTSCHHHHHHHHT-TT
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhCCCc-------EEEeCCcccHHHHHHHHh-CC
Confidence            4788999999987 7899999999864  99999999999998888764221       111111  111    111 11


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+|+|+-.+-    ..    ...+..+.|+|||+++.-.
T Consensus       212 ~g~Dvvid~~g----~~----~~~~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          212 IGADAAIDSIG----GP----DGNELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             SCEEEEEESSC----HH----HHHHHHHTEEEEEEEEECC
T ss_pred             CCCcEEEECCC----Ch----hHHHHHHHhcCCCEEEEEe
Confidence            37999986542    11    1233448999999998865

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.81  E-value=0.00096  Score=62.70  Aligned_cols=95  Identities=12%  Similarity=0.071  Sum_probs=65.7

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cC--cCCCCc
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VS--SALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~--~~l~~f  194 (318)
                      ..++++||.+| +|++|..++.+|+.  .|++|+++ .+++..+.++++     |... +. ...|..+ +.  ..-..+
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~--~Ga~Vi~~-~~~~~~~~~~~l-----Ga~~-i~-~~~~~~~~~~~~~~~~g~  217 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALA--RGARVFAT-ARGSDLEYVRDL-----GATP-ID-ASREPEDYAAEHTAGQGF  217 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEE-ECHHHHHHHHHH-----TSEE-EE-TTSCHHHHHHHHHTTSCE
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHH--CCCEEEEE-eCHHHHHHHHHc-----CCCE-ec-cCCCHHHHHHHHhcCCCc
Confidence            47889999999 79999999999986  49999999 898888877664     2211 22 1111111 00  111379


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+||-.+  |   .   ..+....+.|+|||+++.-.
T Consensus       218 D~vid~~--g---~---~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          218 DLVYDTL--G---G---PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             EEEEESS--C---T---HHHHHHHHHEEEEEEEEESC
T ss_pred             eEEEECC--C---c---HHHHHHHHHHhcCCeEEEEc
Confidence            9998554  2   1   36777789999999998754

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.81  E-value=0.0018  Score=61.22  Aligned_cols=115  Identities=12%  Similarity=0.081  Sum_probs=71.2

Q ss_pred             CCCCEEEEEccCCChHHHHHH---HHhCCCCcEE--EEEeCCh---------HHHHHHHHHhhcCCCC-CCC--eEEEEc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVL---AINHLTTTCF--DNYDIDP---------SANSKALSLVSSDPDL-STR--MFFHTT  182 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~L---A~~~~~ga~V--~gvDid~---------~ai~~Ar~~~~~~~gl-~~r--i~f~~g  182 (318)
                      .+.-+||++|-| .|+-.+..   +.+..|..++  +.+|-++         ..-+..+.+....... +.+  .++..|
T Consensus        95 ~~~~~IlE~GFG-TGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~G  173 (308)
T 3vyw_A           95 RKVIRILDVGFG-LGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLG  173 (308)
T ss_dssp             CSEEEEEEECCT-TSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEES
T ss_pred             CCCcEEEEeCCC-ccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEec
Confidence            344689999999 68865432   2222356554  5555432         1223333333321111 233  467889


Q ss_pred             cccccCcCCC--CccEEEeccccCC-ChhHH-HHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          183 DIMNVSSALK--DYEVVFLAALVGM-DKDEK-IRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       183 Da~~l~~~l~--~fD~V~~aalvgm-~~~~k-~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                      |+.+....+.  .||++|++++-+- +++-+ .++++.+++.++|||+++.-++.|.
T Consensus       174 Da~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaag~  230 (308)
T 3vyw_A          174 DARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSSLS  230 (308)
T ss_dssp             CHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCCHH
T ss_pred             hHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCcHH
Confidence            9987544443  6999999997632 22222 5899999999999999998776664

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.81  E-value=0.0003  Score=68.44  Aligned_cols=99  Identities=19%  Similarity=0.292  Sum_probs=64.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc--------------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM--------------  185 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~--------------  185 (318)
                      .++++|+.||+|++|..++.+|+.+  |++|+.+|++++..+.++++     |.    +++..|..              
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~v~D~~~~~~~~~~~l-----Ga----~~~~~~~~~~~~~~~g~~~~~~  238 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSM-----GA----EFLELDFKEEAGSGDGYAKVMS  238 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCGGGHHHHHHT-----TC----EECCC--------CCHHHHHHS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHc-----CC----EEEEecccccccccccchhhcc
Confidence            4689999999999999999999874  89999999999887776443     21    12111100              


Q ss_pred             ---------ccCcCCCCccEEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          186 ---------NVSSALKDYEVVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       186 ---------~l~~~l~~fD~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                               ++......+|+|+...++ +.. .. .-+-++..+.|+||++++--.
T Consensus       239 ~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~~-ap-~li~~~~l~~mk~g~vIVdva  292 (401)
T 1x13_A          239 DAFIKAEMELFAAQAKEVDIIVTTALIPGKP-AP-KLITREMVDSMKAGSVIVDLA  292 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHCSEEEECCCCTTSC-CC-CCBCHHHHHTSCTTCEEEETT
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCccCCCC-CC-eeeCHHHHhcCCCCcEEEEEc
Confidence                     121112368999987655 211 11 112245668899999886554

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.80  E-value=0.0021  Score=60.62  Aligned_cols=95  Identities=8%  Similarity=-0.043  Sum_probs=66.4

Q ss_pred             cCCCCEEEEE-ccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-----CCC
Q 021008          119 SRFPTKIAFI-GSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-----ALK  192 (318)
Q Consensus       119 ~~~~~rVL~I-GsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-----~l~  192 (318)
                      ..++++||.+ |+|++|..++.+|+.  .|++|+++|.+++..+.++++-..       ..+ ..+-.++..     ...
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~lGa~-------~~~-~~~~~~~~~~~~~~~~~  234 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARA--FGAEVYATAGSTGKCEACERLGAK-------RGI-NYRSEDFAAVIKAETGQ  234 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHTCS-------EEE-ETTTSCHHHHHHHHHSS
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhcCCC-------EEE-eCCchHHHHHHHHHhCC
Confidence            4688999999 689999999999986  499999999999999888764221       111 111111100     023


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+|+-.+-     .   ..+....+.|+|||+++.-.
T Consensus       235 g~Dvvid~~g-----~---~~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          235 GVDIILDMIG-----A---AYFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             CEEEEEESCC-----G---GGHHHHHHTEEEEEEEEECC
T ss_pred             CceEEEECCC-----H---HHHHHHHHHhccCCEEEEEE
Confidence            7999986542     1   15666788999999998765

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.79  E-value=0.0077  Score=49.63  Aligned_cols=100  Identities=12%  Similarity=0.079  Sum_probs=66.6

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh-HHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccE
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP-SANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEV  196 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~-~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~  196 (318)
                      .++|+.+|+|..|.........  .|..|+.+|.++ +..+.......      ..+.++.||+.+..    ......|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~--~g~~V~vid~~~~~~~~~~~~~~~------~~~~~i~gd~~~~~~l~~a~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQ--RGQNVTVISNLPEDDIKQLEQRLG------DNADVIPGDSNDSSVLKKAGIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCHHHHHHHHHHHC------TTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCCEEEEECCChHHHHHHHHhhc------CCCeEEEcCCCCHHHHHHcChhhCCE
Confidence            4689999999777654433333  488999999984 54433332221      34788999987631    13568898


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      |++..    +.......+...++.+.|...++.+-.+
T Consensus        75 vi~~~----~~d~~n~~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           75 ILALS----DNDADNAFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             EEECS----SCHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred             EEEec----CChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            88664    2234556667778888888888887643

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.77  E-value=0.0019  Score=60.55  Aligned_cols=97  Identities=12%  Similarity=0.109  Sum_probs=67.0

Q ss_pred             cCCCCEEEEEccC-CChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc------ccccCcCC
Q 021008          119 SRFPTKIAFIGSG-PLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD------IMNVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsG-plp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD------a~~l~~~l  191 (318)
                      ..++++||.+|+| ++|..++.+|+.. .|++|+++|.+++..+.++++     |.  ...+-..|      +.++.. .
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~-~Ga~Vi~~~~~~~~~~~~~~~-----g~--~~~~~~~~~~~~~~~~~~~~-~  238 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRA-----GA--DYVINASMQDPLAEIRRITE-S  238 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHH-----TC--SEEEETTTSCHHHHHHHHTT-T
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHh-----CC--CEEecCCCccHHHHHHHHhc-C
Confidence            4688999999998 7888888888752 389999999999988888654     21  11121111      111211 1


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.+|+|+-.+-.       ...++...+.|+|||+++.-.
T Consensus       239 ~~~d~vi~~~g~-------~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          239 KGVDAVIDLNNS-------EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             SCEEEEEESCCC-------HHHHTTGGGGEEEEEEEEECC
T ss_pred             CCceEEEECCCC-------HHHHHHHHHHHhcCCEEEEEC
Confidence            379999865521       236777789999999998754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.76  E-value=0.0042  Score=57.73  Aligned_cols=96  Identities=6%  Similarity=-0.012  Sum_probs=65.3

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc----Cc-CCC
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV----SS-ALK  192 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l----~~-~l~  192 (318)
                      ..++++||..|+ |++|..++.+++.  .|++|+++|.+++..+.++++     |.  ...+-..|..++    .. ..+
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~--~G~~V~~~~~~~~~~~~~~~~-----g~--~~~~d~~~~~~~~~~~~~~~~~  213 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKIAYLKQI-----GF--DAAFNYKTVNSLEEALKKASPD  213 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHT-----TC--SEEEETTSCSCHHHHHHHHCTT
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHhc-----CC--cEEEecCCHHHHHHHHHHHhCC
Confidence            467899999997 8899999888886  499999999999888777443     22  112211110111    00 013


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+|+..+-      .  ..++...+.|+|||++++-.
T Consensus       214 ~~d~vi~~~g------~--~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          214 GYDCYFDNVG------G--EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             CEEEEEESSC------H--HHHHHHHTTEEEEEEEEECC
T ss_pred             CCeEEEECCC------h--HHHHHHHHHHhcCCEEEEEe
Confidence            6999986652      1  24777889999999998754

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.74  E-value=0.0075  Score=54.62  Aligned_cols=90  Identities=18%  Similarity=0.149  Sum_probs=60.4

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCc--EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC-CccEEEe
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTT--CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK-DYEVVFL  199 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga--~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~-~fD~V~~  199 (318)
                      ++|.+||+|.+|.+......+  .|.  +|+++|.+++..+.+++     .|...  .+ ..|..+   ... ..|+|++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~--~g~~~~V~~~d~~~~~~~~~~~-----~g~~~--~~-~~~~~~---~~~~~aDvVil   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRR--SGFKGKIYGYDINPESISKAVD-----LGIID--EG-TTSIAK---VEDFSPDFVML   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH--TTCCSEEEEECSCHHHHHHHHH-----TTSCS--EE-ESCGGG---GGGTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHHHh--cCCCcEEEEEeCCHHHHHHHHH-----CCCcc--cc-cCCHHH---HhcCCCCEEEE
Confidence            489999999888775443333  255  89999999988776653     33321  11 223322   234 6899998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +.    +...-..++.++.+.++||.+++.
T Consensus        69 av----p~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           69 SS----PVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             CS----CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             cC----CHHHHHHHHHHHHhhCCCCcEEEE
Confidence            75    344556788889889999987664

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.73  E-value=0.0023  Score=59.69  Aligned_cols=97  Identities=8%  Similarity=0.011  Sum_probs=65.9

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---c--CCC
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---S--ALK  192 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---~--~l~  192 (318)
                      ..++++||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++   + .|.  ...+-..+..++.   .  ..+
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~--~G~~V~~~~~~~~~~~~~~~---~-~g~--~~~~d~~~~~~~~~~~~~~~~~  224 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKM--MGCYVVGSAGSKEKVDLLKT---K-FGF--DDAFNYKEESDLTAALKRCFPN  224 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH---T-SCC--SEEEETTSCSCSHHHHHHHCTT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH---H-cCC--ceEEecCCHHHHHHHHHHHhCC
Confidence            467899999996 8899999999986  48999999999988877752   2 232  1112111111110   0  013


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+|+-.+  |    .  ..++...+.|+|||++++-.
T Consensus       225 ~~d~vi~~~--g----~--~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          225 GIDIYFENV--G----G--KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             CEEEEEESS--C----H--HHHHHHHTTEEEEEEEEECC
T ss_pred             CCcEEEECC--C----H--HHHHHHHHHHhcCCEEEEEc
Confidence            699998655  1    1  36778889999999998754

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=96.71  E-value=0.0013  Score=63.91  Aligned_cols=98  Identities=13%  Similarity=0.040  Sum_probs=67.1

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc-------------
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI-------------  184 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa-------------  184 (318)
                      ..++++||.+|+ |++|..++.+|+.  .|++|++++.+++..+.++++     |...-+.....|.             
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~--~Ga~vi~~~~~~~~~~~~~~l-----Ga~~~i~~~~~~~~~~~~~~~~~~~~  290 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKN--GGGIPVAVVSSAQKEAAVRAL-----GCDLVINRAELGITDDIADDPRRVVE  290 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHT-----TCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhc-----CCCEEEecccccccccccccccccch
Confidence            478899999997 9999999999986  499999999999988887653     3322111111111             


Q ss_pred             ------cccCc-CCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          185 ------MNVSS-ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       185 ------~~l~~-~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                            ..+.. .-..+|+||-.+  |    .  ..++...+.|++||+++.-.
T Consensus       291 ~~~~~~~~v~~~~g~g~Dvvid~~--G----~--~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          291 TGRKLAKLVVEKAGREPDIVFEHT--G----R--VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHHSSCCSEEEECS--C----H--HHHHHHHHHSCTTCEEEESC
T ss_pred             hhhHHHHHHHHHhCCCceEEEECC--C----c--hHHHHHHHHHhcCCEEEEEe
Confidence                  00000 013699998654  2    1  25677788999999998754

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.70  E-value=0.0018  Score=61.32  Aligned_cols=92  Identities=12%  Similarity=0.113  Sum_probs=63.4

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh---HHHHHHHHHhhcCCCCCCCeEEEEcc-ccc-cCcCCCCccE
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP---SANSKALSLVSSDPDLSTRMFFHTTD-IMN-VSSALKDYEV  196 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~---~ai~~Ar~~~~~~~gl~~ri~f~~gD-a~~-l~~~l~~fD~  196 (318)
                      +++||.+|+|++|..++.+|+..  |++|+++|.++   +..+.++++     |.    ..+..+ ..+ +......+|+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~~-----ga----~~v~~~~~~~~~~~~~~~~d~  249 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEET-----KT----NYYNSSNGYDKLKDSVGKFDV  249 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHHH-----TC----EEEECTTCSHHHHHHHCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHHh-----CC----ceechHHHHHHHHHhCCCCCE
Confidence            89999999999999999999864  89999999998   777777654     22    111111 111 1000046999


Q ss_pred             EEeccccCCChhHHHHHH-HHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVI-DHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl-~~l~r~LkpGg~lv~r~  231 (318)
                      |+-.+-.  .     ..+ +...+.|+|||+++.-.
T Consensus       250 vid~~g~--~-----~~~~~~~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          250 IIDATGA--D-----VNILGNVIPLLGRNGVLGLFG  278 (366)
T ss_dssp             EEECCCC--C-----THHHHHHGGGEEEEEEEEECS
T ss_pred             EEECCCC--h-----HHHHHHHHHHHhcCCEEEEEe
Confidence            9865421  1     134 77789999999988765

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=96.69  E-value=0.0012  Score=61.25  Aligned_cols=97  Identities=7%  Similarity=0.064  Sum_probs=62.8

Q ss_pred             CCCC-EEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccE
Q 021008          120 RFPT-KIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEV  196 (318)
Q Consensus       120 ~~~~-rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~  196 (318)
                      .+++ +||.+|+ |++|..++.+|+..  |++|++++.+++..+.++++     |...-+.....|...+.. ....+|+
T Consensus       147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~l-----Ga~~~i~~~~~~~~~~~~~~~~~~d~  219 (328)
T 1xa0_A          147 TPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVL-----GAKEVLAREDVMAERIRPLDKQRWAA  219 (328)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHT-----TCSEEEECC---------CCSCCEEE
T ss_pred             CCCCceEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHc-----CCcEEEecCCcHHHHHHHhcCCcccE
Confidence            4554 8999997 99999999999864  89999999999888887653     321111111111000100 1136999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||-..  |    .  ..++...+.+++||+++.-.
T Consensus       220 vid~~--g----~--~~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          220 AVDPV--G----G--RTLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             EEECS--T----T--TTHHHHHHTEEEEEEEEECS
T ss_pred             EEECC--c----H--HHHHHHHHhhccCCEEEEEe
Confidence            88554  2    1  14667778999999998754

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.68  E-value=0.012  Score=53.84  Aligned_cols=104  Identities=9%  Similarity=0.086  Sum_probs=69.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccccCcCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMNVSSALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~l~~~l~~fD~  196 (318)
                      ..++.+|+|+||+|+|.|-.+.. .  .|+ .|.|+|+-+.--+. -.+++. .|. .-++|..+ |+..++.  ..||.
T Consensus        76 l~~g~~VvDLGaapGGWSq~~a~-~--~g~~~V~avdvG~~ghe~-P~~~~s-~gw-n~v~fk~gvDv~~~~~--~~~Dt  147 (267)
T 3p8z_A           76 VIPEGRVIDLGCGRGGWSYYCAG-L--KKVTEVRGYTKGGPGHEE-PVPMST-YGW-NIVKLMSGKDVFYLPP--EKCDT  147 (267)
T ss_dssp             SCCCEEEEEESCTTSHHHHHHHT-S--TTEEEEEEECCCSTTSCC-CCCCCC-TTT-TSEEEECSCCGGGCCC--CCCSE
T ss_pred             CCCCCEEEEcCCCCCcHHHHHHH-h--cCCCEEEEEecCCCCccC-cchhhh-cCc-CceEEEeccceeecCC--ccccE
Confidence            47888999999999999965443 2  354 69999997632210 012233 444 67999999 9887754  47999


Q ss_pred             EEecccc--CCChhHH---HHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALV--GMDKDEK---IRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalv--gm~~~~k---~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+.+---  +-+.-+.   .++|+-+.+.|++ |-+++--
T Consensus       148 llcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KV  186 (267)
T 3p8z_A          148 LLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKV  186 (267)
T ss_dssp             EEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEE
T ss_pred             EEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEE
Confidence            9976422  2112233   3477777888998 6776654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.67  E-value=0.0057  Score=59.66  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=70.8

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~  196 (318)
                      ...+|+.+|+|.+|.......+.  .|..|+.||.|++.++.+++     .|    +.++.||+.+..    ......|+
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~--~g~~vvvId~d~~~v~~~~~-----~g----~~vi~GDat~~~~L~~agi~~A~~   71 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLS--SGVKMVVLDHDPDHIETLRK-----FG----MKVFYGDATRMDLLESAGAAKAEV   71 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEECCHHHHHHHHH-----TT----CCCEESCTTCHHHHHHTTTTTCSE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHh-----CC----CeEEEcCCCCHHHHHhcCCCccCE
Confidence            45789999999888776555544  48999999999999888763     22    457889998731    23457898


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+++.    +.......+...++.+.|...+++|.
T Consensus        72 viv~~----~~~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           72 LINAI----DDPQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             EEECC----SSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEECC----CChHHHHHHHHHHHHhCCCCeEEEEE
Confidence            88654    33455566677788999999998876

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.66  E-value=0.0034  Score=58.47  Aligned_cols=96  Identities=9%  Similarity=0.035  Sum_probs=65.7

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc--ccc-cC--cCCC
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD--IMN-VS--SALK  192 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD--a~~-l~--~~l~  192 (318)
                      ..++++||.+| +|++|..++.+|+.  .|++|+++|.+++..+.++++     |.  ...+-..+  ..+ +.  ..-.
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~--~G~~Vi~~~~~~~~~~~~~~~-----g~--~~~~d~~~~~~~~~i~~~~~~~  213 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARH--LGATVIGTVSTEEKAETARKL-----GC--HHTINYSTQDFAEVVREITGGK  213 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHH-----TC--SEEEETTTSCHHHHHHHHHTTC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHc-----CC--CEEEECCCHHHHHHHHHHhCCC
Confidence            36789999999 59999999999986  489999999999888887653     21  11111111  000 10  0113


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+|+-.+-      .  ..++...+.|+|||+++.-.
T Consensus       214 ~~d~vi~~~g------~--~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          214 GVDVVYDSIG------K--DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             CEEEEEECSC------T--TTHHHHHHTEEEEEEEEECC
T ss_pred             CCeEEEECCc------H--HHHHHHHHhhccCCEEEEEe
Confidence            6999986552      1  35677789999999988765

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.65  E-value=0.0057  Score=58.86  Aligned_cols=111  Identities=9%  Similarity=0.010  Sum_probs=72.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHH-------h-------CCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAI-------N-------HLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM  185 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~-------~-------~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~  185 (318)
                      +.+-+|+|+||+.+|-|.+.+..       +       -.|..+|..-|.-..--...-+.... .....+-.|+.|...
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~-~~~~~~~~f~~gvpg  128 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPI-ENDVDGVCFINGVPG  128 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTT-SCSCTTCEEEEEEES
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcch-hcccCCCEEEEecch
Confidence            34578999999987777543332       0       24678899999876554443333322 111124578888766


Q ss_pred             c---cCcCCCCccEEEecccc-CCCh-------------------------------hHHHHHHHHHHHhccCCeEEEEE
Q 021008          186 N---VSSALKDYEVVFLAALV-GMDK-------------------------------DEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       186 ~---l~~~l~~fD~V~~aalv-gm~~-------------------------------~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      .   -.+..+++|+||..+-+ ++.+                               .+...+|+..++.|+|||++++-
T Consensus       129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            5   44566799999965433 3321                               24456799999999999999885


Q ss_pred             c
Q 021008          231 S  231 (318)
Q Consensus       231 ~  231 (318)
                      .
T Consensus       209 ~  209 (359)
T 1m6e_X          209 I  209 (359)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.65  E-value=0.0016  Score=65.21  Aligned_cols=90  Identities=17%  Similarity=0.089  Sum_probs=62.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++++|+.||+|++|......++.+  |++|+++|+++...+.|++     .|.    ++  .+..++   +..+|+|+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~-----~Ga----~~--~~l~e~---l~~aDvVi  334 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMM-----EGF----DV--VTVEEA---IGDADIVV  334 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH-----TTC----EE--CCHHHH---GGGCSEEE
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH-----cCC----EE--ecHHHH---HhCCCEEE
Confidence            36889999999999999988888864  8999999999987776653     233    11  122222   24789999


Q ss_pred             eccccCCChhHHHHHHH-HHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVID-HLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~-~l~r~LkpGg~lv~r~  231 (318)
                      .+.-.  .     .++. +..+.|||||+|+.-.
T Consensus       335 ~atgt--~-----~~i~~~~l~~mk~ggilvnvG  361 (494)
T 3ce6_A          335 TATGN--K-----DIIMLEHIKAMKDHAILGNIG  361 (494)
T ss_dssp             ECSSS--S-----CSBCHHHHHHSCTTCEEEECS
T ss_pred             ECCCC--H-----HHHHHHHHHhcCCCcEEEEeC
Confidence            76421  1     1222 4567899999886543

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.64  E-value=0.01  Score=55.80  Aligned_cols=108  Identities=13%  Similarity=0.122  Sum_probs=70.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccccCcCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMNVSSALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~l~~~l~~fD~  196 (318)
                      ..++.+|+|+||+|+|.|-.+..+   .|+ .|.|+|+-..--+. =.++.+ +|. .-|.|..+ |+..++.  ..+|.
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~---~gv~~V~avdvG~~~he~-P~~~~q-l~w-~lV~~~~~~Dv~~l~~--~~~D~  163 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQ---KRVQEVRGYTKGGPGHEE-PQLVQS-YGW-NIVTMKSGVDVFYRPS--ECCDT  163 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTC---TTEEEEEEECCCSTTSCC-CCCCCB-TTG-GGEEEECSCCTTSSCC--CCCSE
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhh---cCCCEEEEEEcCCCCccC-cchhhh-cCC-cceEEEeccCHhhCCC--CCCCE
Confidence            467789999999999999654432   465 59999997641100 001122 333 33889998 9888865  46999


Q ss_pred             EEecccc--CCChhHH---HHHHHHHHHhccCC-eEEEEEcCCC
Q 021008          197 VFLAALV--GMDKDEK---IRVIDHLAKYMAPG-ALLMLRSAHG  234 (318)
Q Consensus       197 V~~aalv--gm~~~~k---~~vl~~l~r~LkpG-g~lv~r~~~g  234 (318)
                      |+.+---  +-+.-+.   .++|+-+.+.|++| |-+++---.|
T Consensus       164 ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          164 LLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             EEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             EEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence            9866421  2112233   44777778899999 8888865444

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.63  E-value=0.01  Score=53.58  Aligned_cols=89  Identities=16%  Similarity=0.172  Sum_probs=60.2

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      ++|.+||+|.+|.+......+  .|.+|+++|.+++..+.+++     .|...  . ...|..++    ...|+|+++. 
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~~~~~~~~~~-----~g~~~--~-~~~~~~~~----~~~D~vi~av-   65 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQQSTCEKAVE-----RQLVD--E-AGQDLSLL----QTAKIIFLCT-   65 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH-----TTSCS--E-EESCGGGG----TTCSEEEECS-
T ss_pred             CEEEEEcCcHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHh-----CCCCc--c-ccCCHHHh----CCCCEEEEEC-
Confidence            379999999887664333222  37799999999987766542     23322  1 12333333    4789999876 


Q ss_pred             cCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          203 VGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                         +......+++++.+.++||..++-
T Consensus        66 ---~~~~~~~~~~~l~~~~~~~~~vv~   89 (279)
T 2f1k_A           66 ---PIQLILPTLEKLIPHLSPTAIVTD   89 (279)
T ss_dssp             ---CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             ---CHHHHHHHHHHHHhhCCCCCEEEE
Confidence               445667888999889999887653

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.63  E-value=0.002  Score=59.75  Aligned_cols=96  Identities=10%  Similarity=0.041  Sum_probs=65.8

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc--cc-ccC--cCCC
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD--IM-NVS--SALK  192 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD--a~-~l~--~~l~  192 (318)
                      ..++++||.+| +|++|..++.+|+..  |++|+++|.+++..+.++++     |.  ...+-..|  .. .+.  ..-.
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~~-----g~--~~~~~~~~~~~~~~~~~~~~~~  208 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALKA-----GA--WQVINYREEDLVERLKEITGGK  208 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH-----TC--SEEEETTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc-----CC--CEEEECCCccHHHHHHHHhCCC
Confidence            36789999999 788999999998864  89999999999888887763     21  11111111  00 010  0112


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+|+..+-        ...++...+.|++||+++.-.
T Consensus       209 ~~D~vi~~~g--------~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          209 KVRVVYDSVG--------RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             CEEEEEECSC--------GGGHHHHHHTEEEEEEEEECC
T ss_pred             CceEEEECCc--------hHHHHHHHHHhcCCCEEEEEe
Confidence            6999986652        235677789999999988765

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.62  E-value=0.013  Score=58.13  Aligned_cols=100  Identities=12%  Similarity=0.111  Sum_probs=66.6

Q ss_pred             CCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHH-HHHH----HHhhcCCCC--------CCCeEEEEccccc
Q 021008          121 FPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSAN-SKAL----SLVSSDPDL--------STRMFFHTTDIMN  186 (318)
Q Consensus       121 ~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai-~~Ar----~~~~~~~gl--------~~ri~f~~gDa~~  186 (318)
                      +-++|.+||+|.+|.+- ..+|+   .|..|+.+|++++.. +..+    +++++ ..+        -.++++. .|.  
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~---aG~~V~l~D~~~e~a~~~i~~~l~~~~~~-G~l~~~~~~~~~~~i~~t-~dl--  125 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGL---AGIETFLVVRNEQRCKQELEVMYAREKSF-KRLNDKRIEKINANLKIT-SDF--  125 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHHHHT-TSCCHHHHHHHHTTEEEE-SCG--
T ss_pred             cCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEECcHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHhcceEEe-CCH--
Confidence            34799999999887763 44554   489999999999821 1111    12222 111        1356653 332  


Q ss_pred             cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                        ......|+|+.+...  +..-|..+++++.+.++||.+|+...
T Consensus       126 --~al~~aDlVIeAVpe--~~~vk~~v~~~l~~~~~~~aIlasnT  166 (460)
T 3k6j_A          126 --HKLSNCDLIVESVIE--DMKLKKELFANLENICKSTCIFGTNT  166 (460)
T ss_dssp             --GGCTTCSEEEECCCS--CHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred             --HHHccCCEEEEcCCC--CHHHHHHHHHHHHhhCCCCCEEEecC
Confidence              234579999987633  45678999999999999999887654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.60  E-value=0.0036  Score=58.97  Aligned_cols=96  Identities=7%  Similarity=-0.111  Sum_probs=65.3

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc--cc-ccC--cCCC
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD--IM-NVS--SALK  192 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD--a~-~l~--~~l~  192 (318)
                      ..++++||.+| +|++|..++.+|+.  .|++|+++|.+++..+.++++     |.  ...+-..+  .. .+.  ..-.
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~~-----g~--~~~~~~~~~~~~~~~~~~~~~~  230 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRM--AGAIPLVTAGSQKKLQMAEKL-----GA--AAGFNYKKEDFSEATLKFTKGA  230 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHH-----TC--SEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHc-----CC--cEEEecCChHHHHHHHHHhcCC
Confidence            46789999999 78899999999986  499999999999988888654     21  11111111  00 010  1113


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+|+-.+-.        ..+....+.|++||+++.-.
T Consensus       231 ~~d~vi~~~G~--------~~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          231 GVNLILDCIGG--------SYWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             CEEEEEESSCG--------GGHHHHHHHEEEEEEEEECC
T ss_pred             CceEEEECCCc--------hHHHHHHHhccCCCEEEEEe
Confidence            69999866521        14566778999999998765

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.59  E-value=0.0049  Score=58.14  Aligned_cols=96  Identities=8%  Similarity=0.088  Sum_probs=65.4

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc--cc-ccC--cCCC
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD--IM-NVS--SALK  192 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD--a~-~l~--~~l~  192 (318)
                      ..++++||..|+ |++|..++.+|+.  .|++|+++|.+++..+.++++     |.  ...+-..+  .. .+.  ....
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~~-----ga--~~~~d~~~~~~~~~~~~~~~~~  238 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARA--YGLKILGTAGTEEGQKIVLQN-----GA--HEVFNHREVNYIDKIKKYVGEK  238 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHT-----TC--SEEEETTSTTHHHHHHHHHCTT
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHH--CCCEEEEEeCChhHHHHHHHc-----CC--CEEEeCCCchHHHHHHHHcCCC
Confidence            467899999997 8899999999986  489999999999888876543     32  11111111  00 010  1112


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+|+-.+-      .  ..+....+.|+|||+++.-.
T Consensus       239 ~~D~vi~~~G------~--~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          239 GIDIIIEMLA------N--VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             CEEEEEESCH------H--HHHHHHHHHEEEEEEEEECC
T ss_pred             CcEEEEECCC------h--HHHHHHHHhccCCCEEEEEe
Confidence            6999986652      1  24667789999999998755

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.59  E-value=0.023  Score=53.22  Aligned_cols=106  Identities=11%  Similarity=0.086  Sum_probs=66.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHH-HHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSK-ALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~-Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ....||..||+|.+|.+............+|+.+|++++..+. +..+.....-++.++++..++.    .++...|+|+
T Consensus         4 ~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~----~al~~aDvVi   79 (316)
T 1ldn_A            4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY----DDCRDADLVV   79 (316)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG----GGTTTCSEEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcH----HHhCCCCEEE
Confidence            3567999999999888765544432234589999999975442 4455443112223566664432    2355799999


Q ss_pred             eccccCCC------------hhHHHHHHHHHHHhccCCeEEEEE
Q 021008          199 LAALVGMD------------KDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       199 ~aalvgm~------------~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +++-++..            .+-+.++.+.+.+. .|.+.+++-
T Consensus        80 ia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~~iv~  122 (316)
T 1ldn_A           80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVA  122 (316)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEEC
T ss_pred             EcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH-CCCCEEEEe
Confidence            88755321            13456666666665 588877664

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.59  E-value=0.0014  Score=60.88  Aligned_cols=95  Identities=9%  Similarity=0.062  Sum_probs=64.5

Q ss_pred             CCCC-EEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc-cccCcC--CCCc
Q 021008          120 RFPT-KIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI-MNVSSA--LKDY  194 (318)
Q Consensus       120 ~~~~-rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa-~~l~~~--l~~f  194 (318)
                      .+++ +||.+|+ |++|..++.+|+..  |++|++++.+++..+.++++     |. + ..+-..+. .+....  ...+
T Consensus       148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~l-----Ga-~-~v~~~~~~~~~~~~~~~~~~~  218 (330)
T 1tt7_A          148 SPEKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQL-----GA-S-EVISREDVYDGTLKALSKQQW  218 (330)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHHH-----TC-S-EEEEHHHHCSSCCCSSCCCCE
T ss_pred             CCCCceEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-----CC-c-EEEECCCchHHHHHHhhcCCc
Confidence            4554 8999997 99999999999864  89999999999888887753     22 1 11111111 111011  1369


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+||-..  |    .  ..+....+.++|||+++.-.
T Consensus       219 d~vid~~--g----~--~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          219 QGAVDPV--G----G--KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             EEEEESC--C----T--HHHHHHHTTEEEEEEEEECC
T ss_pred             cEEEECC--c----H--HHHHHHHHhhcCCCEEEEEe
Confidence            9988554  2    1  25777889999999998764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.57  E-value=0.0057  Score=57.89  Aligned_cols=104  Identities=17%  Similarity=0.204  Sum_probs=69.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-CC---------CCeEEEEcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-LS---------TRMFFHTTD  183 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l~---------~ri~f~~gD  183 (318)
                      +...+|..||+|.+|-.-......  .|..|+-+|+++++++.+.+.+++.      .| +.         .++++. .|
T Consensus         4 p~~~~VaViGaG~MG~giA~~~a~--~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~   80 (319)
T 3ado_A            4 PAAGDVLIVGSGLVGRSWAMLFAS--GGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TN   80 (319)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CC
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cc
Confidence            445799999999877653333223  4999999999999998886554320      11 11         234443 22


Q ss_pred             ccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          184 IMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       184 a~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                         +...+...|+|+ .+.. -+.+-|.++|+++-++++|+.+|.-++
T Consensus        81 ---l~~a~~~ad~Vi-Eav~-E~l~iK~~lf~~l~~~~~~~aIlaSNT  123 (319)
T 3ado_A           81 ---LAEAVEGVVHIQ-ECVP-ENLDLKRKIFAQLDSIVDDRVVLSSSS  123 (319)
T ss_dssp             ---HHHHTTTEEEEE-ECCC-SCHHHHHHHHHHHHTTCCSSSEEEECC
T ss_pred             ---hHhHhccCcEEe-eccc-cHHHHHHHHHHHHHHHhhhcceeehhh
Confidence               222345678877 4422 267899999999999999999988766

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.55  E-value=0.0087  Score=55.86  Aligned_cols=97  Identities=22%  Similarity=0.290  Sum_probs=65.9

Q ss_pred             CCCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ...++|.+||+|.+|.+- ..++    .|..|+.+|++++.++.+.+.+.. . .-.++++. .|..    +....|+|+
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la----aG~~V~v~d~~~~~~~~~~~~l~~-~-~~~~i~~~-~~~~----~~~~aDlVi   78 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA----SKHEVVLQDVSEKALEAAREQIPE-E-LLSKIEFT-TTLE----KVKDCDIVM   78 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH----TTSEEEEECSCHHHHHHHHHHSCG-G-GGGGEEEE-SSCT----TGGGCSEEE
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH----cCCEEEEEECCHHHHHHHHHHHHH-H-HhCCeEEe-CCHH----HHcCCCEEE
Confidence            456899999999877653 2333    288999999999999988776211 0 11355543 2332    245789999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+...  +..-|..++.++...  ||.+++...
T Consensus        79 eavpe--~~~vk~~l~~~l~~~--~~~Ilasnt  107 (293)
T 1zej_A           79 EAVFE--DLNTKVEVLREVERL--TNAPLCSNT  107 (293)
T ss_dssp             ECCCS--CHHHHHHHHHHHHTT--CCSCEEECC
T ss_pred             EcCcC--CHHHHHHHHHHHhcC--CCCEEEEEC
Confidence            77543  456688999998765  988887654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.54  E-value=0.0076  Score=59.40  Aligned_cols=102  Identities=22%  Similarity=0.271  Sum_probs=66.9

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCC---------CCCeEEEEccccccCcC
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDL---------STRMFFHTTDIMNVSSA  190 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl---------~~ri~f~~gDa~~l~~~  190 (318)
                      +||.+||+|.+|.+. ..||+   .|.+|+++|+|++.++..++-...  ..|+         ..++++. .|..+.   
T Consensus         3 mkI~VIG~G~vG~~lA~~La~---~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea---   75 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAE---LGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQA---   75 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHH---
T ss_pred             CEEEEECcCHHHHHHHHHHHh---cCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHH---
Confidence            589999999887764 34554   388999999999888776552110  0111         2345553 343332   


Q ss_pred             CCCccEEEeccccCC------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 LKDYEVVFLAALVGM------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 l~~fD~V~~aalvgm------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....|+|+++.--..      +...-..+++.+.+.+++|.+++..+
T Consensus        76 ~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           76 VPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS  122 (450)
T ss_dssp             GGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             HhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence            236899997752110      11256788999999999998888766

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.51  E-value=0.0043  Score=61.61  Aligned_cols=105  Identities=23%  Similarity=0.241  Sum_probs=69.1

Q ss_pred             CCCCEEEEEccCCChHH-HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCC---------CCCeEEEEcccccc
Q 021008          120 RFPTKIAFIGSGPLPLT-SIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDL---------STRMFFHTTDIMNV  187 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~t-ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl---------~~ri~f~~gDa~~l  187 (318)
                      ....||..||+|.+|.+ +.+||+   .|.+|+++|+|++.++..++-...  ..|+         ..++++. .|..+ 
T Consensus         6 ~~~~~I~VIG~G~vG~~lA~~la~---~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t-td~~~-   80 (478)
T 2y0c_A            6 HGSMNLTIIGSGSVGLVTGACLAD---IGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFS-TDIEA-   80 (478)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-CCHHH-
T ss_pred             CCCceEEEECcCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEE-CCHHH-
Confidence            45689999999987775 456665   388999999999988877653110  0122         1345542 23321 


Q ss_pred             CcCCCCccEEEeccccCC------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          188 SSALKDYEVVFLAALVGM------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 ~~~l~~fD~V~~aalvgm------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                        .....|+||++--.+.      +......+++.+.+.++||.+++..+
T Consensus        81 --a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           81 --AVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             --HHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             --HhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence              1236899997742110      12577889999999999998887665

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.49  E-value=0.012  Score=53.59  Aligned_cols=87  Identities=16%  Similarity=0.310  Sum_probs=58.8

Q ss_pred             CEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      .+|.+||+ |.+|.+......+  .|.+|+.+|.+++..+..++     .|.    ++  .+   ........|+|+++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~--~g~~V~~~~r~~~~~~~~~~-----~g~----~~--~~---~~~~~~~aDvVi~av   75 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHD--SAHHLAAIEIAPEGRDRLQG-----MGI----PL--TD---GDGWIDEADVVVLAL   75 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH--SSSEEEEECCSHHHHHHHHH-----TTC----CC--CC---SSGGGGTCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHh-----cCC----Cc--CC---HHHHhcCCCEEEEcC
Confidence            59999999 9877664332222  37899999999987766544     232    11  12   222234789999876


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                          +...-.++++++...++||.+++-
T Consensus        76 ----~~~~~~~v~~~l~~~l~~~~ivv~   99 (286)
T 3c24_A           76 ----PDNIIEKVAEDIVPRVRPGTIVLI   99 (286)
T ss_dssp             ----CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             ----CchHHHHHHHHHHHhCCCCCEEEE
Confidence                344567888888888998876654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.43  E-value=0.013  Score=53.18  Aligned_cols=99  Identities=8%  Similarity=0.008  Sum_probs=60.0

Q ss_pred             CEEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC----CeEEEEccccccCcCCCCccEE
Q 021008          123 TKIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST----RMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~----ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      .||++||+|.+|..... |++   .|.+|+.+|.+++..+..++.-....+.+.    ++++.  +..++......+|+|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~---~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~v   78 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQ---GGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIF--SPEEIDHQNEQVDLI   78 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEE--CGGGCCTTSCCCSEE
T ss_pred             CeEEEECcCHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceee--cchhhcccCCCCCEE
Confidence            58999999987765433 333   378999999999877665432110000000    11111  111222222379999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +++-    +...-..+++.+.+.++||..++.-
T Consensus        79 i~~v----~~~~~~~v~~~l~~~l~~~~~iv~~  107 (316)
T 2ew2_A           79 IALT----KAQQLDAMFKAIQPMITEKTYVLCL  107 (316)
T ss_dssp             EECS----CHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             EEEe----ccccHHHHHHHHHHhcCCCCEEEEe
Confidence            9875    3345677888999999998876654

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.42  E-value=0.0053  Score=57.63  Aligned_cols=120  Identities=10%  Similarity=0.169  Sum_probs=69.1

Q ss_pred             hHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCC-eEEE
Q 021008          102 NYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTR-MFFH  180 (318)
Q Consensus       102 ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~r-i~f~  180 (318)
                      -+.+|.+..-..    ...++++|+|+||+|+|.|-. ++++. +-..|+|+|+........+. ...   ++.+ +.+.
T Consensus        66 aa~KL~ei~ek~----l~~~g~~vlDLGaaPGgWsqv-a~~~~-gv~sV~Gvdlg~~~~~~P~~-~~~---~~~~iv~~~  135 (300)
T 3eld_A           66 GAAKIRWLHERG----YLRITGRVLDLGCGRGGWSYY-AAAQK-EVMSVKGYTLGIEGHEKPIH-MQT---LGWNIVKFK  135 (300)
T ss_dssp             THHHHHHHHHHT----SCCCCEEEEEETCTTCHHHHH-HHTST-TEEEEEEECCCCTTSCCCCC-CCB---TTGGGEEEE
T ss_pred             HHHHHHHHHHhC----CCCCCCEEEEcCCCCCHHHHH-HHHhc-CCceeeeEEecccccccccc-ccc---cCCceEEee
Confidence            445666555332    237889999999999999964 44322 34479999997532110000 001   1222 3333


Q ss_pred             Ec-cccccCcCCCCccEEEecccc--CCCh---hHHHHHHHHHHHhccCC-eEEEEEcCC
Q 021008          181 TT-DIMNVSSALKDYEVVFLAALV--GMDK---DEKIRVIDHLAKYMAPG-ALLMLRSAH  233 (318)
Q Consensus       181 ~g-Da~~l~~~l~~fD~V~~aalv--gm~~---~~k~~vl~~l~r~LkpG-g~lv~r~~~  233 (318)
                      .+ |+..++  -..||+|+.+...  |...   ..-..+++-..+.|+|| |.|++--..
T Consensus       136 ~~~di~~l~--~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          136 DKSNVFTMP--TEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CSCCTTTSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             cCceeeecC--CCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            22 433432  2479999976422  2211   11134566667899999 999997765

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=96.42  E-value=0.0045  Score=58.04  Aligned_cols=91  Identities=9%  Similarity=-0.028  Sum_probs=60.7

Q ss_pred             CEEEEE-ccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc---CC---CCcc
Q 021008          123 TKIAFI-GSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS---AL---KDYE  195 (318)
Q Consensus       123 ~rVL~I-GsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~---~l---~~fD  195 (318)
                      ++|+.. |+|++|..++.+|+..  |++|+++|.+++..+.++++     |..  . ++..+-.++..   +.   ..+|
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~~-----Ga~--~-~~~~~~~~~~~~v~~~~~~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKDI-----GAA--H-VLNEKAPDFEATLREVMKAEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHHH-----TCS--E-EEETTSTTHHHHHHHHHHHHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-----CCC--E-EEECCcHHHHHHHHHHhcCCCCc
Confidence            566554 8999999999999864  99999999999998888754     211  1 11111111110   00   2699


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+-.+-     .   ..+....+.|+|||+++.-.
T Consensus       236 ~vid~~g-----~---~~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          236 IFLDAVT-----G---PLASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             EEEESSC-----H---HHHHHHHHHSCTTCEEEECC
T ss_pred             EEEECCC-----C---hhHHHHHhhhcCCCEEEEEe
Confidence            9985542     1   12366778999999998865

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.39  E-value=0.0026  Score=60.48  Aligned_cols=97  Identities=6%  Similarity=0.016  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCc-CCCCccE
Q 021008          120 RFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSS-ALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~-~l~~fD~  196 (318)
                      .++++||.+|+ |++|..++.+|+.  .|++|+++. +++..+.+++     +|...-+.+...|..+ +.. ..+.+|+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~--~Ga~Vi~~~-~~~~~~~~~~-----lGa~~vi~~~~~~~~~~v~~~t~g~~d~  234 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRL--SGYIPIATC-SPHNFDLAKS-----RGAEEVFDYRAPNLAQTIRTYTKNNLRY  234 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHH--TTCEEEEEE-CGGGHHHHHH-----TTCSEEEETTSTTHHHHHHHHTTTCCCE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHH--CCCEEEEEe-CHHHHHHHHH-----cCCcEEEECCCchHHHHHHHHccCCccE
Confidence            67899999999 8899999999986  499999985 8887777765     3321111111112111 100 1125999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhc-cCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYM-APGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~L-kpGg~lv~r~  231 (318)
                      ||-..  |     -...++...+.| ++||+++.-.
T Consensus       235 v~d~~--g-----~~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          235 ALDCI--T-----NVESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             EEESS--C-----SHHHHHHHHHHSCTTCEEEEESS
T ss_pred             EEECC--C-----chHHHHHHHHHhhcCCCEEEEEe
Confidence            98543  2     123566677888 6999998754

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.37  E-value=0.014  Score=53.04  Aligned_cols=91  Identities=16%  Similarity=0.169  Sum_probs=59.5

Q ss_pred             CCEEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          122 PTKIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      .++|.+||+|.+|.+... |++. ..+.+|+++|.+++..+.+++     .|...  . ...|..+   .....|+|+++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~~~~~~~~~~-----~g~~~--~-~~~~~~~---~~~~aDvVila   73 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRD-HPHYKIVGYNRSDRSRDIALE-----RGIVD--E-ATADFKV---FAALADVIILA   73 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-CTTSEEEEECSSHHHHHHHHH-----TTSCS--E-EESCTTT---TGGGCSEEEEC
T ss_pred             cceEEEEeeCHHHHHHHHHHHhC-CCCcEEEEEcCCHHHHHHHHH-----cCCcc--c-ccCCHHH---hhcCCCEEEEc
Confidence            368999999988776433 3332 236799999999987776543     23211  1 1223222   23468999987


Q ss_pred             cccCCChhHHHHHHHHHHHh-ccCCeEEE
Q 021008          201 ALVGMDKDEKIRVIDHLAKY-MAPGALLM  228 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~-LkpGg~lv  228 (318)
                      .    +...-..+++++... ++||.+++
T Consensus        74 v----p~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           74 V----PIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             S----CHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             C----CHHHHHHHHHHHHhcCCCCCCEEE
Confidence            6    334446788888888 88887766

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.36  E-value=0.011  Score=56.33  Aligned_cols=98  Identities=12%  Similarity=0.115  Sum_probs=65.6

Q ss_pred             CCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc---C--CCCCCCeEEEEccccccCcCCCCc
Q 021008          121 FPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSS---D--PDLSTRMFFHTTDIMNVSSALKDY  194 (318)
Q Consensus       121 ~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~---~--~gl~~ri~f~~gDa~~l~~~l~~f  194 (318)
                      ..+||.+||+|.+|.+. ..|++   .|..|+.+|++++.++..++.-..   .  ..+..++++. .|..+   .....
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~---~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~e---a~~~a  100 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLAR---KGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKA---SLEGV  100 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHT---TTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHH---HHTTC
T ss_pred             cCCeEEEECccHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHH---HHhcC
Confidence            35799999999887664 33443   478999999999887766553211   0  1123445542 33322   22468


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      |+|+++-    +.....++++++...++||..++.
T Consensus       101 DvVilaV----p~~~~~~vl~~i~~~l~~~~ivvs  131 (356)
T 3k96_A          101 TDILIVV----PSFAFHEVITRMKPLIDAKTRIAW  131 (356)
T ss_dssp             CEEEECC----CHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             CEEEECC----CHHHHHHHHHHHHHhcCCCCEEEE
Confidence            9999775    456778899999999999887654

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=96.30  E-value=0.0018  Score=61.05  Aligned_cols=102  Identities=5%  Similarity=-0.061  Sum_probs=61.2

Q ss_pred             cCCC-CEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE---ccccc-cCc---
Q 021008          119 SRFP-TKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT---TDIMN-VSS---  189 (318)
Q Consensus       119 ~~~~-~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~---gDa~~-l~~---  189 (318)
                      ..++ ++||.+|+ |++|..++.+|+..  |++|+++..+++..+..++.+++ .|...-+....   .|..+ +..   
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~-lGa~~vi~~~~~~~~~~~~~i~~~t~  240 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKE-LGATQVITEDQNNSREFGPTIKEWIK  240 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHH-HTCSEEEEHHHHHCGGGHHHHHHHHH
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCccccHHHHHHHHh-cCCeEEEecCccchHHHHHHHHHHhh
Confidence            3677 99999997 99999999999864  99999998766542222223333 34321111110   12111 110   


Q ss_pred             -CCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          190 -ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       190 -~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       .-..+|+||-..  |    . .... ...+.|+|||+++.-.
T Consensus       241 ~~~~g~Dvvid~~--G----~-~~~~-~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          241 QSGGEAKLALNCV--G----G-KSST-GIARKLNNNGLMLTYG  275 (364)
T ss_dssp             HHTCCEEEEEESS--C----H-HHHH-HHHHTSCTTCEEEECC
T ss_pred             ccCCCceEEEECC--C----c-hhHH-HHHHHhccCCEEEEec
Confidence             113799998554  2    1 1122 5568999999998754

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.28  E-value=0.036  Score=51.49  Aligned_cols=99  Identities=20%  Similarity=0.224  Sum_probs=60.9

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCc--EEEEEeCChHHHHH-HHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTT--CFDNYDIDPSANSK-ALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga--~V~gvDid~~ai~~-Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      +||..||+|.+|.+.......  .|.  .|+.+|++++.++. +..+... ..+..++++...|.    .++...|+|++
T Consensus         1 mkI~VIGaG~vG~~la~~la~--~g~~~eV~L~D~~~~~~~~~~~~l~~~-~~~~~~~~i~~~~~----~a~~~aDvVIi   73 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVL--RGSCSELVLVDRDEDRAQAEAEDIAHA-APVSHGTRVWHGGH----SELADAQVVIL   73 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSSHHHHHHHHHHHTTS-CCTTSCCEEEEECG----GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCCHHHHHHHHHhhhhh-hhhcCCeEEEECCH----HHhCCCCEEEE
Confidence            489999999988876554443  254  89999999986553 4444333 22223455544342    23457899998


Q ss_pred             ccccCC------------ChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALVGM------------DKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalvgm------------~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ++-++.            +.+-+.++++.+.+. .|++.+++
T Consensus        74 ~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~  114 (304)
T 2v6b_A           74 TAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLV  114 (304)
T ss_dssp             CC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEE
T ss_pred             cCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEE
Confidence            874421            112346677777776 69998776

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.26  E-value=0.016  Score=50.58  Aligned_cols=96  Identities=11%  Similarity=0.005  Sum_probs=65.5

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEEE
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V~  198 (318)
                      ++|+.+|+|.+|.........  .|..|+.+|.|++.++...   ..     ..+.++.||+.+..    .....+|+|+
T Consensus         1 M~iiIiG~G~~G~~la~~L~~--~g~~v~vid~~~~~~~~l~---~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLS--RKYGVVIINKDRELCEEFA---KK-----LKATIIHGDGSHKEILRDAEVSKNDVVV   70 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHH---HH-----SSSEEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHH---HH-----cCCeEEEcCCCCHHHHHhcCcccCCEEE
Confidence            479999999877664433333  4889999999998766532   22     23578999998631    1345789888


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++.    +......++..+++.+.|...++.|..
T Consensus        71 ~~~----~~d~~n~~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           71 ILT----PRDEVNLFIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             ECC----SCHHHHHHHHHHHHHTSCCCEEEECCC
T ss_pred             Eec----CCcHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            654    223445566677777888888888763

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.24  E-value=0.01  Score=56.89  Aligned_cols=60  Identities=8%  Similarity=-0.071  Sum_probs=48.0

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV  187 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l  187 (318)
                      ++..|++||.|++.+|...+.+.  ...+|++||+|+..+..-++.. .    .++++++.+|+.++
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~--~~~~vvavE~D~~l~~~L~~~~-~----~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKY--CPRQYSLLEKRSSLYKFLNAKF-E----GSPLQILKRDPYDW  117 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHH--CCSEEEEECCCHHHHHHHHHHT-T----TSSCEEECSCTTCH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhC--CCCEEEEEecCHHHHHHHHHhc-c----CCCEEEEECCccch
Confidence            46899999999999998766432  3568999999999888777665 2    26899999999765

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.23  E-value=0.0046  Score=63.63  Aligned_cols=106  Identities=16%  Similarity=0.196  Sum_probs=72.5

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCC------C-----CcEEEEEeC---ChHHHHHH-----------HHHhhcCC----
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHL------T-----TTCFDNYDI---DPSANSKA-----------LSLVSSDP----  171 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~------~-----ga~V~gvDi---d~~ai~~A-----------r~~~~~~~----  171 (318)
                      ++-+|+++|-| +|+..+.+.+...      |     ..+++.+|.   +.+.+..|           +++.+.-.    
T Consensus        58 ~~~~i~e~gfG-~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~  136 (689)
T 3pvc_A           58 QSCIFAETGFG-TGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA  136 (689)
T ss_dssp             SEEEEEEECCT-TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred             CceEEEEecCc-hHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence            45699999999 7999887765320      1     157999999   44444432           23333200    


Q ss_pred             C-----CC---CCeEEEEccccccCcCC-----CCccEEEeccccCCChhHH------HHHHHHHHHhccCCeEEEEEc
Q 021008          172 D-----LS---TRMFFHTTDIMNVSSAL-----KDYEVVFLAALVGMDKDEK------IRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       172 g-----l~---~ri~f~~gDa~~l~~~l-----~~fD~V~~aalvgm~~~~k------~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |     +.   -+++++.||+.+....+     ..||.+|++++-    +.|      .+++..+++.++|||++....
T Consensus       137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~----p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFA----PAKNPDMWNEQLFNAMARMTRPGGTFSTFT  211 (689)
T ss_dssp             EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSC----C--CCTTCSHHHHHHHHHHEEEEEEEEESC
T ss_pred             CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCC----CCCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence            1     11   25778999998754443     479999999874    344      789999999999999998765

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.21  E-value=0.02  Score=53.79  Aligned_cols=105  Identities=17%  Similarity=0.211  Sum_probs=61.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHH-HHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANS-KALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~-~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+.||..||+|..|.+............+|+.+|++++.++ .+..+... ..+..++++..+|-    .++...|+|+
T Consensus         5 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~-~~~~~~~~i~~~~~----~a~~~aDvVi   79 (318)
T 1y6j_A            5 KSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG-LPFMGQMSLYAGDY----SDVKDCDVIV   79 (318)
T ss_dssp             --CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTS-CCCTTCEEEC--CG----GGGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHh-HHhcCCeEEEECCH----HHhCCCCEEE
Confidence            356899999999988887655543222348999999987654 35555443 22335666664432    2355899999


Q ss_pred             eccccCC----ChhH--------HHHHHHHHHHhccCCeEEEEE
Q 021008          199 LAALVGM----DKDE--------KIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       199 ~aalvgm----~~~~--------k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +.+-++.    ...+        -.++.+.+.+. .|++.+++-
T Consensus        80 i~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~  122 (318)
T 1y6j_A           80 VTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVV  122 (318)
T ss_dssp             ECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEEC
T ss_pred             EcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEe
Confidence            8875522    1111        13455555554 699998884

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=96.21  E-value=0.0072  Score=56.75  Aligned_cols=97  Identities=8%  Similarity=-0.033  Sum_probs=65.6

Q ss_pred             cCCC--CEEEEEcc-CCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc--ccc-cCc-C
Q 021008          119 SRFP--TKIAFIGS-GPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD--IMN-VSS-A  190 (318)
Q Consensus       119 ~~~~--~rVL~IGs-Gplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD--a~~-l~~-~  190 (318)
                      ..++  ++||..|+ |++|..++.+|+.  .|+ +|+++|.+++..+.+++.    .|.  ...+-..+  ..+ +.. .
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~--~Ga~~Vi~~~~~~~~~~~~~~~----~g~--~~~~d~~~~~~~~~~~~~~  227 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHF--LGCSRVVGICGTHEKCILLTSE----LGF--DAAINYKKDNVAEQLRESC  227 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHHT----SCC--SEEEETTTSCHHHHHHHHC
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHH--CCCCeEEEEeCCHHHHHHHHHH----cCC--ceEEecCchHHHHHHHHhc
Confidence            4677  99999997 8899999999986  488 999999999877776542    232  11111111  100 100 0


Q ss_pred             CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+.+|+|+-.+-      .  ..++...+.|++||+++.-.
T Consensus       228 ~~~~d~vi~~~G------~--~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          228 PAGVDVYFDNVG------G--NISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             TTCEEEEEESCC------H--HHHHHHHHTEEEEEEEEECC
T ss_pred             CCCCCEEEECCC------H--HHHHHHHHHhccCcEEEEEC
Confidence            116999986652      1  56788889999999998754

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.21  E-value=0.021  Score=59.51  Aligned_cols=99  Identities=16%  Similarity=0.198  Sum_probs=67.5

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhc----C--CC---------CCCCeEEEEccccc
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSS----D--PD---------LSTRMFFHTTDIMN  186 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~----~--~g---------l~~ri~f~~gDa~~  186 (318)
                      ++|..||+|.+|.... .+|+   .|..|+.+|++++.++.+++.+..    .  .|         ...++++. .|.  
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~---aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d~--  386 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGS-LDY--  386 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEE-SSS--
T ss_pred             cEEEEEcCCHhhHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEe-CCH--
Confidence            5799999998876533 3443   488999999999999887543211    0  11         12355543 333  


Q ss_pred             cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                        ......|+|+.+..-  +..-|..++.++.+.++||.+|+...
T Consensus       387 --~~~~~aDlVIeaVpe--~~~vk~~v~~~l~~~~~~~~Ilasnt  427 (725)
T 2wtb_A          387 --ESFRDVDMVIEAVIE--NISLKQQIFADLEKYCPQHCILASNT  427 (725)
T ss_dssp             --GGGTTCSEEEECCCS--CHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             --HHHCCCCEEEEcCcC--CHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence              234578999977532  44568899999999999999876544

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=96.20  E-value=0.007  Score=57.01  Aligned_cols=96  Identities=11%  Similarity=0.075  Sum_probs=57.7

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEE-eCChH---HHHHHHHHhhcCCCCCCCeEEEE-----ccccccC
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNY-DIDPS---ANSKALSLVSSDPDLSTRMFFHT-----TDIMNVS  188 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gv-Did~~---ai~~Ar~~~~~~~gl~~ri~f~~-----gDa~~l~  188 (318)
                      ..++++||.+|+ |++|..++.+|+..  |++++++ +.++.   ..+.+    ++ .|..  -.+-.     .++.++.
T Consensus       165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~----~~-lGa~--~vi~~~~~~~~~~~~~~  235 (357)
T 1zsy_A          165 LQPGDSVIQNASNSGVGQAVIQIAAAL--GLRTINVVRDRPDIQKLSDRL----KS-LGAE--HVITEEELRRPEMKNFF  235 (357)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEECCCSCHHHHHHHH----HH-TTCS--EEEEHHHHHSGGGGGTT
T ss_pred             cCCCCEEEEeCCcCHHHHHHHHHHHHc--CCEEEEEecCccchHHHHHHH----Hh-cCCc--EEEecCcchHHHHHHHH
Confidence            368899999997 99999999999864  8876555 44443   23333    33 4432  11211     1222222


Q ss_pred             cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          189 SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       189 ~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+.+|+||-..  |   ..  .. ....+.|+|||+++.-.
T Consensus       236 ~~~~~~Dvvid~~--g---~~--~~-~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          236 KDMPQPRLALNCV--G---GK--SS-TELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SSSCCCSEEEESS--C---HH--HH-HHHHTTSCTTCEEEECC
T ss_pred             hCCCCceEEEECC--C---cH--HH-HHHHHhhCCCCEEEEEe
Confidence            2212599998543  2   11  12 34578999999998754

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.07  E-value=0.038  Score=52.32  Aligned_cols=104  Identities=13%  Similarity=0.178  Sum_probs=73.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC--------------------CCCCeEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD--------------------LSTRMFF  179 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g--------------------l~~ri~f  179 (318)
                      .+...|+.+||| +-..+..+...+ +++++.-||. |+.++.-++++.. .+                    .+++.++
T Consensus        96 ~~~~qVV~LGaG-lDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  171 (334)
T 1rjd_A           96 NEKVQVVNLGCG-SDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRE-SEILRISLGLSKEDTAKSPFLIDQGRYKL  171 (334)
T ss_dssp             CSSEEEEEETCT-TCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHH-SHHHHHHHTCCSSCCCCTTEEEECSSEEE
T ss_pred             CCCcEEEEeCCC-CccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhh-ccchhhhcccccccccccccccCCCceEE
Confidence            456899999999 677777776543 6788888888 9999999988876 32                    1478999


Q ss_pred             EEccccccC------cCC---CCccEEEecccc-CCChhHHHHHHHHHHHhccCCeEEE
Q 021008          180 HTTDIMNVS------SAL---KDYEVVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       180 ~~gDa~~l~------~~l---~~fD~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      +.+|+.+..      ...   +...+++...++ =|+.+.-.++++.+.+.. |||.++
T Consensus       172 v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v  229 (334)
T 1rjd_A          172 AACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWI  229 (334)
T ss_dssp             EECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEE
T ss_pred             EecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEE
Confidence            999998731      111   123344444432 447788889999999877 666664

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.01  E-value=0.014  Score=54.48  Aligned_cols=92  Identities=16%  Similarity=0.079  Sum_probs=57.4

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHH----HHHHHHhhcCCCCCCCeEEEEc-cccccCcCCCCcc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSAN----SKALSLVSSDPDLSTRMFFHTT-DIMNVSSALKDYE  195 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai----~~Ar~~~~~~~gl~~ri~f~~g-Da~~l~~~l~~fD  195 (318)
                      .++|.+||+|.+|.+......+  .| ..|+++|++++..    +...++. . .|.       .. +..++   ....|
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~--~G~~~V~~~dr~~~~~~~~~~~~~~~~-~-~g~-------~~~s~~e~---~~~aD   89 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGG--RNAARLAAYDLRFNDPAASGALRARAA-E-LGV-------EPLDDVAG---IACAD   89 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCSEEEEECGGGGCTTTHHHHHHHHH-H-TTC-------EEESSGGG---GGGCS
T ss_pred             CCeEEEECccHHHHHHHHHHHH--cCCCeEEEEeCCCccccchHHHHHHHH-H-CCC-------CCCCHHHH---HhcCC
Confidence            4699999999887664332222  37 8999999998321    2222222 2 232       22 33332   23689


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+++-    +...-.+.++.+...++||.+++-.+
T Consensus        90 vVi~av----p~~~~~~~~~~i~~~l~~~~ivv~~s  121 (317)
T 4ezb_A           90 VVLSLV----VGAATKAVAASAAPHLSDEAVFIDLN  121 (317)
T ss_dssp             EEEECC----CGGGHHHHHHHHGGGCCTTCEEEECC
T ss_pred             EEEEec----CCHHHHHHHHHHHhhcCCCCEEEECC
Confidence            999775    23344556788999999998776544

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.95  E-value=0.018  Score=53.09  Aligned_cols=90  Identities=9%  Similarity=0.029  Sum_probs=59.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+++|+.||+|.+|......++.+  |++|+++|.+++..+.+.    . .|.    ++..  ..++...+..+|+|++
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~----~-~g~----~~~~--~~~l~~~l~~aDvVi~  219 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAAL--GAKVKVGARESDLLARIA----E-MGM----EPFH--ISKAAQELRDVDVCIN  219 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----H-TTS----EEEE--GGGHHHHTTTCSEEEE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHH----H-CCC----eecC--hhhHHHHhcCCCEEEE
Confidence            5789999999999988887777754  889999999997654443    2 232    2221  1223223458999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +.-.++-  .+     +..+.|+||++++-
T Consensus       220 ~~p~~~i--~~-----~~l~~mk~~~~lin  242 (293)
T 3d4o_A          220 TIPALVV--TA-----NVLAEMPSHTFVID  242 (293)
T ss_dssp             CCSSCCB--CH-----HHHHHSCTTCEEEE
T ss_pred             CCChHHh--CH-----HHHHhcCCCCEEEE
Confidence            7643331  12     12357999987653

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.95  E-value=0.05  Score=54.12  Aligned_cols=105  Identities=21%  Similarity=0.281  Sum_probs=67.6

Q ss_pred             CCCCEEEEEccCCChHHH-HHHHHhCCCCc-EEEEEeCChH----HHHHHHHHhhc----CCCC---------CCCeEEE
Q 021008          120 RFPTKIAFIGSGPLPLTS-IVLAINHLTTT-CFDNYDIDPS----ANSKALSLVSS----DPDL---------STRMFFH  180 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~ta-i~LA~~~~~ga-~V~gvDid~~----ai~~Ar~~~~~----~~gl---------~~ri~f~  180 (318)
                      .+-++|.+||+|.+|.+. ..||+.  +|. .|+++|+|++    .++.-++-...    ..|+         ..++++.
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~~--~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~t   93 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFADA--PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECT   93 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHHS--TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHh--CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEe
Confidence            455799999999988774 455652  488 9999999998    66654431100    0111         2456653


Q ss_pred             EccccccCcCCCCccEEEeccccCC--------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          181 TTDIMNVSSALKDYEVVFLAALVGM--------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       181 ~gDa~~l~~~l~~fD~V~~aalvgm--------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       .|. +   .....|+|+++---+.        +...-..+.+.+.+.++||.+++..+
T Consensus        94 -td~-e---a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  147 (478)
T 3g79_A           94 -PDF-S---RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLES  147 (478)
T ss_dssp             -SCG-G---GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             -CcH-H---HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence             342 2   2346899997643221        22334567789999999999887766

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.95  E-value=0.013  Score=56.16  Aligned_cols=94  Identities=15%  Similarity=0.146  Sum_probs=61.0

Q ss_pred             CCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          121 FPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       121 ~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..++|.+||+|.+|... ..|++   .|..|+++|++++.++...+     .|.    . ...+..++.......|+||+
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~---~G~~V~v~dr~~~~~~~l~~-----~g~----~-~~~s~~e~~~~a~~~DvVi~   87 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRK---GGHECVVYDLNVNAVQALER-----EGI----A-GARSIEEFCAKLVKPRVVWL   87 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHT-----TTC----B-CCSSHHHHHHHSCSSCEEEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHHHH-----CCC----E-EeCCHHHHHhcCCCCCEEEE
Confidence            45799999999887764 33443   38899999999987665432     222    1 12233333222234599997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +-    +...-..+++.+...++||.+++--+
T Consensus        88 ~v----p~~~v~~vl~~l~~~l~~g~iiId~s  115 (358)
T 4e21_A           88 MV----PAAVVDSMLQRMTPLLAANDIVIDGG  115 (358)
T ss_dssp             CS----CGGGHHHHHHHHGGGCCTTCEEEECS
T ss_pred             eC----CHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence            64    22356678899999999988776533

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.94  E-value=0.036  Score=42.47  Aligned_cols=70  Identities=19%  Similarity=0.168  Sum_probs=48.8

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc---CcCCCCccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV---SSALKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l---~~~l~~fD~  196 (318)
                      ..++|+.+|+|.+|.........  .| .+|+.+|.+++..+...    .     .++.++.+|..+.   .....++|+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~--~g~~~v~~~~r~~~~~~~~~----~-----~~~~~~~~d~~~~~~~~~~~~~~d~   72 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKT--SSNYSVTVADHDLAALAVLN----R-----MGVATKQVDAKDEAGLAKALGGFDA   72 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHH--CSSEEEEEEESCHHHHHHHH----T-----TTCEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCHHHHHHHH----h-----CCCcEEEecCCCHHHHHHHHcCCCE
Confidence            35799999999877765544443  37 89999999997766543    2     3456777887652   222347999


Q ss_pred             EEecc
Q 021008          197 VFLAA  201 (318)
Q Consensus       197 V~~aa  201 (318)
                      |+..+
T Consensus        73 vi~~~   77 (118)
T 3ic5_A           73 VISAA   77 (118)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99766

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=95.93  E-value=0.017  Score=60.13  Aligned_cols=101  Identities=15%  Similarity=0.099  Sum_probs=67.9

Q ss_pred             CCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc------CCCC-C--------CCeEEEEccc
Q 021008          121 FPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSS------DPDL-S--------TRMFFHTTDI  184 (318)
Q Consensus       121 ~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~------~~gl-~--------~ri~f~~gDa  184 (318)
                      +-++|.+||+|.+|... ..+++   .|..|+.+|++++.++.+++.+..      ..|. .        .++++. .|.
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~---aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d~  388 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSAS---KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT-LSY  388 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE-SSS
T ss_pred             cCCEEEEECCChhhHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEE-CCH
Confidence            44689999999877653 34444   488999999999998887542211      0121 1        135542 232


Q ss_pred             cccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          185 MNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       185 ~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                          ......|+|+.+...  +..-|..++.++.+.++||.+|+...
T Consensus       389 ----~~~~~aDlVIeaV~e--~~~vk~~v~~~l~~~~~~~~Ilasnt  429 (715)
T 1wdk_A          389 ----GDFGNVDLVVEAVVE--NPKVKQAVLAEVENHVREDAILASNT  429 (715)
T ss_dssp             ----TTGGGCSEEEECCCS--CHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred             ----HHHCCCCEEEEcCCC--CHHHHHHHHHHHHhhCCCCeEEEeCC
Confidence                234578999987532  44568899999999999998876543

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.92  E-value=0.069  Score=49.87  Aligned_cols=104  Identities=17%  Similarity=0.209  Sum_probs=65.6

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHH-HHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSK-ALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~-Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      +||..||+|..|.+...+........+++-+|++++..+. +..+... ..+..++++..+|-    .++...|+|++.+
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~-~~~~~~~~v~~~~~----~a~~~aD~Vii~a   75 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHA-TPFAHPVWVWAGSY----GDLEGARAVVLAA   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTT-GGGSCCCEEEECCG----GGGTTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHh-HhhcCCeEEEECCH----HHhCCCCEEEECC
Confidence            4899999999888876655443234689999999876663 5555543 22235667665442    2355899999887


Q ss_pred             ccC----CChhH----HHHHHHHHHHhc---cCCeEEEEEc
Q 021008          202 LVG----MDKDE----KIRVIDHLAKYM---APGALLMLRS  231 (318)
Q Consensus       202 lvg----m~~~~----k~~vl~~l~r~L---kpGg~lv~r~  231 (318)
                      -++    |...+    -..++.++.+.+   .|.|.+++-+
T Consensus        76 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  116 (310)
T 2xxj_A           76 GVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT  116 (310)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence            552    22111    134444444433   7999888753

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=95.89  E-value=0.0078  Score=59.65  Aligned_cols=113  Identities=11%  Similarity=0.031  Sum_probs=71.2

Q ss_pred             ChhhHHHhhHHHHHHHhhcc--cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCC
Q 021008           99 YYSNYIKLSQLEFNILTQHC--SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTR  176 (318)
Q Consensus        99 Y~~ny~~L~~~E~~~l~~~~--~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~r  176 (318)
                      -|+|+.-+-+.-...+.+..  ...+++|+.||.|.+|......++.+  |++|+.+|+||.....|.    . .|.   
T Consensus       222 ~fDn~yG~~eslvdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lraf--Ga~Viv~d~dp~~a~~A~----~-~G~---  291 (464)
T 3n58_A          222 KFDNKYGCKESLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGA--GARVKVTEVDPICALQAA----M-DGF---  291 (464)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHH----H-TTC---
T ss_pred             hhhhhhcchHHHHHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHC--CCEEEEEeCCcchhhHHH----h-cCc---
Confidence            46777655555555554433  36889999999999999888888764  999999999996543332    2 222   


Q ss_pred             eEEEEccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          177 MFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       177 i~f~~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                       ++  .+..++   +...|+|+...  +    .+.-+-++..+.||||++|+ +.++|
T Consensus       292 -~v--v~LeEl---L~~ADIVv~at--g----t~~lI~~e~l~~MK~GAILI-NvGRg  336 (464)
T 3n58_A          292 -EV--VTLDDA---ASTADIVVTTT--G----NKDVITIDHMRKMKDMCIVG-NIGHF  336 (464)
T ss_dssp             -EE--CCHHHH---GGGCSEEEECC--S----SSSSBCHHHHHHSCTTEEEE-ECSSS
T ss_pred             -ee--ccHHHH---HhhCCEEEECC--C----CccccCHHHHhcCCCCeEEE-EcCCC
Confidence             22  222222   34789988643  1    11111134457899999875 55554

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.84  E-value=0.025  Score=44.87  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=59.8

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---c-CCCCccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---S-ALKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---~-~l~~fD~  196 (318)
                      ..++|+.+|+|.+|........+  .|.+|+.+|.+++..+.+    .. .    ...++.+|..+..   . ....+|+
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~--~g~~v~~~d~~~~~~~~~----~~-~----~~~~~~~d~~~~~~l~~~~~~~~d~   73 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHR--MGHEVLAVDINEEKVNAY----AS-Y----ATHAVIANATEENELLSLGIRNFEY   73 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHH--TTCCCEEEESCHHHHHTT----TT-T----CSEEEECCTTCHHHHHTTTGGGCSE
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHH----HH-h----CCEEEEeCCCCHHHHHhcCCCCCCE
Confidence            34689999999877776554443  478999999998654432    22 1    2356778876421   1 1347899


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |+...-.  + .+....+....+.+.+. .++.+..
T Consensus        74 vi~~~~~--~-~~~~~~~~~~~~~~~~~-~ii~~~~  105 (144)
T 2hmt_A           74 VIVAIGA--N-IQASTLTTLLLKELDIP-NIWVKAQ  105 (144)
T ss_dssp             EEECCCS--C-HHHHHHHHHHHHHTTCS-EEEEECC
T ss_pred             EEECCCC--c-hHHHHHHHHHHHHcCCC-eEEEEeC
Confidence            8876521  1 13333455566778886 6666553

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.83  E-value=0.011  Score=58.24  Aligned_cols=112  Identities=13%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             hhhHHHhhHHHHHHHhhcc--cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCe
Q 021008          100 YSNYIKLSQLEFNILTQHC--SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRM  177 (318)
Q Consensus       100 ~~ny~~L~~~E~~~l~~~~--~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri  177 (318)
                      |+|..-.-+.-...+.+..  ...+++|+.+|.|++|......++.+  |++|+++|+||.....|.    . .|.    
T Consensus       196 fDn~yGt~~s~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~--Ga~Viv~D~dp~ra~~A~----~-~G~----  264 (435)
T 3gvp_A          196 FDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAM--GSIVYVTEIDPICALQAC----M-DGF----  264 (435)
T ss_dssp             HHTHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHH----H-TTC----
T ss_pred             hhhhhhhHHHHHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHC--CCEEEEEeCChhhhHHHH----H-cCC----
Confidence            4554433333334443332  25889999999999999988888764  999999999996544432    2 232    


Q ss_pred             EEEEccccccCcCCCCccEEEeccccCCChhHHHHHH-HHHHHhccCCeEEEEEcCCCc
Q 021008          178 FFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVI-DHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       178 ~f~~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl-~~l~r~LkpGg~lv~r~~~g~  235 (318)
                      +  ..+..+   .+...|+|++..  +    .+ .++ .+..+.||||++| +.-++|-
T Consensus       265 ~--v~~Lee---al~~ADIVi~at--g----t~-~lI~~e~l~~MK~gail-INvgrg~  310 (435)
T 3gvp_A          265 R--LVKLNE---VIRQVDIVITCT--G----NK-NVVTREHLDRMKNSCIV-CNMGHSN  310 (435)
T ss_dssp             E--ECCHHH---HTTTCSEEEECS--S----CS-CSBCHHHHHHSCTTEEE-EECSSTT
T ss_pred             E--eccHHH---HHhcCCEEEECC--C----Cc-ccCCHHHHHhcCCCcEE-EEecCCC
Confidence            1  122222   344789998742  1    11 122 2445789999866 4445553

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.81  E-value=0.019  Score=53.02  Aligned_cols=90  Identities=11%  Similarity=0.066  Sum_probs=58.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+++|+.||+|.+|......++.+  |++|+++|.+++..+.+.    . .|.    +...  ..++...+..+|+|++
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~d~~~~~~~~~~----~-~g~----~~~~--~~~l~~~l~~aDvVi~  221 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAAL--GANVKVGARSSAHLARIT----E-MGL----VPFH--TDELKEHVKDIDICIN  221 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----H-TTC----EEEE--GGGHHHHSTTCSEEEE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----H-CCC----eEEc--hhhHHHHhhCCCEEEE
Confidence            5789999999999988887777654  899999999997554432    2 232    2221  1223223458999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +.-.++-  .+     +..+.||||++++-
T Consensus       222 ~~p~~~i--~~-----~~~~~mk~g~~lin  244 (300)
T 2rir_A          222 TIPSMIL--NQ-----TVLSSMTPKTLILD  244 (300)
T ss_dssp             CCSSCCB--CH-----HHHTTSCTTCEEEE
T ss_pred             CCChhhh--CH-----HHHHhCCCCCEEEE
Confidence            7644331  11     13478999987643

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.80  E-value=0.025  Score=55.12  Aligned_cols=102  Identities=18%  Similarity=0.139  Sum_probs=62.7

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCC---------CCCeEEEEccccccCcC
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDL---------STRMFFHTTDIMNVSSA  190 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl---------~~ri~f~~gDa~~l~~~  190 (318)
                      ++|..||+|.+|.+. ..|++   .|.+|+++|+|++.++..++--..  ..++         ..++++ +.|..+.   
T Consensus         1 mkI~VIG~G~vG~~~A~~la~---~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~-t~~~~~~---   73 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSA---RGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKA---   73 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHH---
T ss_pred             CEEEEECCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE-eCCHHHH---
Confidence            479999999988864 44554   388999999999888765541000  0111         124554 2333221   


Q ss_pred             CCCccEEEeccccCCC------hhHHHHHHHHHHHhccC---CeEEEEEc
Q 021008          191 LKDYEVVFLAALVGMD------KDEKIRVIDHLAKYMAP---GALLMLRS  231 (318)
Q Consensus       191 l~~fD~V~~aalvgm~------~~~k~~vl~~l~r~Lkp---Gg~lv~r~  231 (318)
                      ....|+|+++---..+      ...-.++++.+.+.++|   |.+++..+
T Consensus        74 ~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~S  123 (436)
T 1mv8_A           74 VLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS  123 (436)
T ss_dssp             HHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS
T ss_pred             hccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeC
Confidence            2368999977522110      01145688999999999   77776554

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.76  E-value=0.053  Score=50.87  Aligned_cols=105  Identities=13%  Similarity=0.200  Sum_probs=64.9

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHH-HHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANS-KALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~-~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      +..||..||+|..|.+...+........+++-+|++++..+ .+..+... ..+..++++..++-    .++...|+|++
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~-~~~~~~~~v~~~~~----~a~~~aDvVii   78 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA-QAFTAPKKIYSGEY----SDCKDADLVVI   78 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG-GGGSCCCEEEECCG----GGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHH-HHhcCCeEEEECCH----HHhCCCCEEEE
Confidence            45799999999988887655443222458999999997665 35555443 22335666665432    23457899998


Q ss_pred             ccccCCCh--------hHHHHHHHHHHHhc---cCCeEEEEE
Q 021008          200 AALVGMDK--------DEKIRVIDHLAKYM---APGALLMLR  230 (318)
Q Consensus       200 aalvgm~~--------~~k~~vl~~l~r~L---kpGg~lv~r  230 (318)
                      .+-++...        ..-..++.++.+.+   .|.|.+++-
T Consensus        79 ~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~  120 (318)
T 1ez4_A           79 TAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA  120 (318)
T ss_dssp             CCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence            87552111        01124555555433   799988875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.76  E-value=0.037  Score=50.98  Aligned_cols=102  Identities=24%  Similarity=0.279  Sum_probs=57.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc--EEEEEeCChHHHH-HHHHHhhcCCCCCCCeEEEEc-cccccCcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT--CFDNYDIDPSANS-KALSLVSSDPDLSTRMFFHTT-DIMNVSSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga--~V~gvDid~~ai~-~Ar~~~~~~~gl~~ri~f~~g-Da~~l~~~l~~fD  195 (318)
                      ..+.||+.||+|.+|.+.......  .|.  .|+.+|++++..+ .+.++... ..+....++... |.    .....+|
T Consensus         5 ~~~mkI~IiGaG~vG~~~a~~l~~--~g~~~~V~l~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~----~~~~~aD   77 (319)
T 1lld_A            5 VKPTKLAVIGAGAVGSTLAFAAAQ--RGIAREIVLEDIAKERVEAEVLDMQHG-SSFYPTVSIDGSDDP----EICRDAD   77 (319)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSSHHHHHHHHHHHHHT-GGGSTTCEEEEESCG----GGGTTCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCChhHHHHHHHHHHhh-hhhcCCeEEEeCCCH----HHhCCCC
Confidence            345799999999887765443322  355  8999999986655 22222111 111113344333 32    2335799


Q ss_pred             EEEecccc----CCCh--------hHHHHHHHHHHHhccCCeEEEE
Q 021008          196 VVFLAALV----GMDK--------DEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       196 ~V~~aalv----gm~~--------~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +|+++.-.    +++.        .....+++.+.+. .|++.++.
T Consensus        78 ~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~  122 (319)
T 1lld_A           78 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYML  122 (319)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEE
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEE
Confidence            99987632    1111        1223667777664 78887655

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=95.75  E-value=0.053  Score=56.77  Aligned_cols=100  Identities=17%  Similarity=0.257  Sum_probs=70.6

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC-------------CCCCCCeEEEEccccccCc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD-------------PDLSTRMFFHTTDIMNVSS  189 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-------------~gl~~ri~f~~gDa~~l~~  189 (318)
                      ++|..||+|.+|-.-...+..  .|..|+-+|+++++++.+++.+...             .....++++. .|..    
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~--aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~----  389 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFAR--VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS-SSTK----  389 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEE-SCGG----
T ss_pred             cEEEEEcccHHHHHHHHHHHh--CCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhccc-CcHH----
Confidence            699999999876543333322  5999999999999999887655320             1122344442 2222    


Q ss_pred             CCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          190 ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++...|+|+=+. + -+.+-|.++++++-++++|+.+|..++
T Consensus       390 ~l~~aDlVIEAV-~-E~l~iK~~vf~~le~~~~~~aIlASNT  429 (742)
T 3zwc_A          390 ELSTVDLVVEAV-F-EDMNLKKKVFAELSALCKPGAFLCTNT  429 (742)
T ss_dssp             GGGSCSEEEECC-C-SCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             HHhhCCEEEEec-c-ccHHHHHHHHHHHhhcCCCCceEEecC
Confidence            345789888443 2 267999999999999999999998876

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.74  E-value=0.04  Score=51.22  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=59.8

Q ss_pred             CCCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCC--CCCeEEEEccccccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDL--STRMFFHTTDIMNVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl--~~ri~f~~gDa~~l~~~l~~f  194 (318)
                      ....||+.||+|.+|... ..|++   .|..|+.+ .+++.++..++.-..  ..+.  ..++.+ +.|.    .....+
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~---~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~-~~~~----~~~~~~   87 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLAR---AGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSA-SSDP----SAVQGA   87 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHH---TTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEE-ESCG----GGGTTC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHH---CCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeee-eCCH----HHcCCC
Confidence            356799999999877554 33443   47899999 998877766543111  0111  011111 1222    123579


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      |+|+++-    +...-..+++.+...++|+..++.-
T Consensus        88 D~vilav----k~~~~~~~l~~l~~~l~~~~~iv~~  119 (318)
T 3hwr_A           88 DLVLFCV----KSTDTQSAALAMKPALAKSALVLSL  119 (318)
T ss_dssp             SEEEECC----CGGGHHHHHHHHTTTSCTTCEEEEE
T ss_pred             CEEEEEc----ccccHHHHHHHHHHhcCCCCEEEEe
Confidence            9999875    3345678899999999998876543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=95.74  E-value=0.033  Score=49.92  Aligned_cols=92  Identities=14%  Similarity=0.152  Sum_probs=58.1

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      ..+|..||+|.+|........+  .|.+ |+.+|.+++..+...+   . .|    +.+ ..|..++   ....|+|+++
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~--~g~~~v~~~~~~~~~~~~~~~---~-~g----~~~-~~~~~~~---~~~~Dvvi~a   75 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYR--KGFRIVQVYSRTEESARELAQ---K-VE----AEY-TTDLAEV---NPYAKLYIVS   75 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSHHHHHHHHH---H-TT----CEE-ESCGGGS---CSCCSEEEEC
T ss_pred             CCeEEEEcCCHHHHHHHHHHHH--CCCeEEEEEeCCHHHHHHHHH---H-cC----Cce-eCCHHHH---hcCCCEEEEe
Confidence            4689999999877654322222  2666 8999999977665433   2 22    222 2333332   3478999987


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .    +...-.++++.+.+.++||..++--.
T Consensus        76 v----~~~~~~~v~~~l~~~~~~~~ivv~~s  102 (266)
T 3d1l_A           76 L----KDSAFAELLQGIVEGKREEALMVHTA  102 (266)
T ss_dssp             C----CHHHHHHHHHHHHTTCCTTCEEEECC
T ss_pred             c----CHHHHHHHHHHHHhhcCCCcEEEECC
Confidence            6    33344678888888888887665443

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.73  E-value=0.032  Score=49.06  Aligned_cols=95  Identities=11%  Similarity=0.027  Sum_probs=63.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCC-CCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHL-TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~-~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~f  194 (318)
                      ...++|+.+|+|..|..   +|+... .|. |+.+|.|++.++.++    .      .+.++.||+.+..    ......
T Consensus         7 ~~~~~viI~G~G~~G~~---la~~L~~~g~-v~vid~~~~~~~~~~----~------~~~~i~gd~~~~~~l~~a~i~~a   72 (234)
T 2aef_A            7 AKSRHVVICGWSESTLE---CLRELRGSEV-FVLAEDENVRKKVLR----S------GANFVHGDPTRVSDLEKANVRGA   72 (234)
T ss_dssp             ---CEEEEESCCHHHHH---HHHHSTTSEE-EEEESCGGGHHHHHH----T------TCEEEESCTTCHHHHHHTTCTTC
T ss_pred             CCCCEEEEECCChHHHH---HHHHHHhCCe-EEEEECCHHHHHHHh----c------CCeEEEcCCCCHHHHHhcCcchh
Confidence            34579999999865543   444332 367 999999998776553    1      2688999998631    235588


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |.|+++.    +.......+...++.+.|+..++.|-.
T Consensus        73 d~vi~~~----~~d~~n~~~~~~a~~~~~~~~iia~~~  106 (234)
T 2aef_A           73 RAVIVDL----ESDSETIHCILGIRKIDESVRIIAEAE  106 (234)
T ss_dssp             SEEEECC----SCHHHHHHHHHHHHHHCSSSEEEEECS
T ss_pred             cEEEEcC----CCcHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            9888654    223444556667788999888888763

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.70  E-value=0.027  Score=51.78  Aligned_cols=93  Identities=15%  Similarity=0.213  Sum_probs=58.9

Q ss_pred             CCCEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          121 FPTKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+||.+||+|.+|.+.. .|++   .|..|+++|++++..+...+     .|.    .....+..+   .....|+|++
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~~~~-----~g~----~~~~~~~~e---~~~~aDvvi~   70 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLR---AGLSTWGADLNPQACANLLA-----EGA----CGAAASARE---FAGVVDALVI   70 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHH-----TTC----SEEESSSTT---TTTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHH-----cCC----ccccCCHHH---HHhcCCEEEE
Confidence            457999999998877643 3443   48899999999987766543     222    111233333   2347899998


Q ss_pred             ccccCCChhHHHHHH---HHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVI---DHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl---~~l~r~LkpGg~lv~r~  231 (318)
                      +--   +...-..++   +.+.+.++||.+++-.+
T Consensus        71 ~vp---~~~~~~~v~~~~~~l~~~l~~g~ivv~~s  102 (303)
T 3g0o_A           71 LVV---NAAQVRQVLFGEDGVAHLMKPGSAVMVSS  102 (303)
T ss_dssp             CCS---SHHHHHHHHC--CCCGGGSCTTCEEEECS
T ss_pred             ECC---CHHHHHHHHhChhhHHhhCCCCCEEEecC
Confidence            752   112334455   66778899988876544

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.68  E-value=0.024  Score=52.62  Aligned_cols=99  Identities=21%  Similarity=0.282  Sum_probs=60.3

Q ss_pred             CCEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhh-c--CCCCCC--CeEEEEccccccCcCCCCcc
Q 021008          122 PTKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVS-S--DPDLST--RMFFHTTDIMNVSSALKDYE  195 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~-~--~~gl~~--ri~f~~gDa~~l~~~l~~fD  195 (318)
                      ..||+.||+|.+|.... .|++   .|..|+.+|.+++..+..++... .  ..+...  ++.....|..+.   ...+|
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D   77 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLAL---KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDAD   77 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCS
T ss_pred             cCeEEEECCCHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH---HhcCC
Confidence            36999999998775532 3443   47899999999987766544311 0  000110  010112222221   24799


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +|+++.    +...-..+++.+.+.+++|..++.-
T Consensus        78 ~vi~~v----~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           78 VILIVV----PAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             EEEECS----CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             EEEEeC----CchHHHHHHHHHHHhCCCCCEEEEc
Confidence            999875    2233467889999999999876655

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.66  E-value=0.064  Score=50.45  Aligned_cols=103  Identities=21%  Similarity=0.259  Sum_probs=64.3

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHH-HHhhc--CCCCCCCeEEEEccccccCcCCCCccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKAL-SLVSS--DPDLSTRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar-~~~~~--~~gl~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      .+.||..||+|.+|.+...+...  .|. .|+.+|++++.++... .+...  ..+...++++. .|.    .++...|+
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~--~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~----~al~~aD~   85 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQ--KDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-NNY----EYLQNSDV   85 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SCG----GGGTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-CCH----HHHCCCCE
Confidence            34799999999988875444433  354 7999999998877522 22111  01223456543 443    23457899


Q ss_pred             EEecccc----CC--------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALV----GM--------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalv----gm--------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |++++-+    |+        +.+-+.++++.+.+.. |++.+++-+
T Consensus        86 VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~t  131 (328)
T 2hjr_A           86 VIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICIT  131 (328)
T ss_dssp             EEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred             EEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            9988633    22        1234777888887775 888876643

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.65  E-value=0.087  Score=49.26  Aligned_cols=107  Identities=13%  Similarity=0.212  Sum_probs=62.5

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHH-HHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSK-ALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~-Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .+.||..||+|..|.+.............|..+|++++..+. +..+.....-++.++++..++.    .++...|+|++
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~----~a~~~aDvVvi   80 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEY----SDCHDADLVVI   80 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCG----GGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCH----HHhCCCCEEEE
Confidence            467999999999888765544332123589999999865542 3333222011224556654332    23457999998


Q ss_pred             ccccCCCh--------hHHHHHHHHHHHhc---cCCeEEEEEc
Q 021008          200 AALVGMDK--------DEKIRVIDHLAKYM---APGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~--------~~k~~vl~~l~r~L---kpGg~lv~r~  231 (318)
                      .+-++...        ..-..++.++.+.+   .|+|.+++-+
T Consensus        81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  123 (317)
T 3d0o_A           81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT  123 (317)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            87653211        11123444444332   8999988843

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.64  E-value=0.028  Score=55.34  Aligned_cols=104  Identities=21%  Similarity=0.254  Sum_probs=64.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCC-------CCCeEEEEccccccCcC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDL-------STRMFFHTTDIMNVSSA  190 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl-------~~ri~f~~gDa~~l~~~  190 (318)
                      ..-++|.+||+|.+|.+......   .|.+|+++|+|++.++..++-...  ..++       ..++++. .|..+   .
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La---~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~t-td~~e---a  106 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIA---QNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRAT-TDKHD---A  106 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHH---TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEE-SCHHH---H
T ss_pred             cCCCEEEEECcCHHHHHHHHHHH---cCCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEE-cCHHH---H
Confidence            34469999999988876543332   288999999999988876542100  0000       1345542 33322   2


Q ss_pred             CCCccEEEeccccCCC-------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 LKDYEVVFLAALVGMD-------KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 l~~fD~V~~aalvgm~-------~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....|+|+++---..+       ...-..+++.+.+ ++||.+++..+
T Consensus       107 ~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~S  153 (432)
T 3pid_A          107 YRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKS  153 (432)
T ss_dssp             HTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECS
T ss_pred             HhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeC
Confidence            2468999976421111       0134567788888 99999988766

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.62  E-value=0.031  Score=50.54  Aligned_cols=46  Identities=15%  Similarity=0.021  Sum_probs=39.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~  169 (318)
                      .++..|||..||. |.|++..++   .|.+++|+|+++.+++.|++.++.
T Consensus       211 ~~~~~vlD~f~Gs-Gtt~~~a~~---~gr~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          211 NPNDLVLDCFMGS-GTTAIVAKK---LGRNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CTTCEEEESSCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCCEEEECCCCC-CHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHh
Confidence            6889999999994 777765544   489999999999999999998876

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.58  E-value=0.016  Score=57.19  Aligned_cols=105  Identities=23%  Similarity=0.250  Sum_probs=68.0

Q ss_pred             CCCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCC---------CCCeEEEEcccccc
Q 021008          120 RFPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDL---------STRMFFHTTDIMNV  187 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl---------~~ri~f~~gDa~~l  187 (318)
                      ...-||.+||.|-+|++. .+||+   .|.+|+++|+|++.++.-++-...  ..|+         ..++++ +.|..+.
T Consensus         6 ~~~~~~~vIGlG~vG~~~A~~La~---~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea   81 (446)
T 4a7p_A            6 HGSVRIAMIGTGYVGLVSGACFSD---FGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEG   81 (446)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHH
T ss_pred             CCceEEEEEcCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHH
Confidence            345799999999887764 56665   388999999999887765442100  0121         245555 3343322


Q ss_pred             CcCCCCccEEEeccccCCC-------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          188 SSALKDYEVVFLAALVGMD-------KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 ~~~l~~fD~V~~aalvgm~-------~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                         ....|+||++--.+.+       ...-..+++.+.+.|++|.+++..+
T Consensus        82 ---~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S  129 (446)
T 4a7p_A           82 ---VKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS  129 (446)
T ss_dssp             ---HTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS
T ss_pred             ---HhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence               2368999976321111       1135678899999999999888876

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.54  E-value=0.024  Score=56.10  Aligned_cols=104  Identities=18%  Similarity=0.291  Sum_probs=64.8

Q ss_pred             CEEEEEccCCChHH-HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCC--------CCCeEEEEccccccCcCC
Q 021008          123 TKIAFIGSGPLPLT-SIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDL--------STRMFFHTTDIMNVSSAL  191 (318)
Q Consensus       123 ~rVL~IGsGplp~t-ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl--------~~ri~f~~gDa~~l~~~l  191 (318)
                      ++|.+||+|.+|.+ +..||+. .+|.+|+++|+|++.++..++-...  ..|+        ..++++ +.|..+   ..
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~-g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~-t~~~~~---~~   84 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHK-CPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFF-SSDIPK---AI   84 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHH-CTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHH---HH
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHH---Hh
Confidence            69999999998876 4556653 2478999999999887765431000  0111        123444 223222   12


Q ss_pred             CCccEEEeccccCC-----------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 KDYEVVFLAALVGM-----------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm-----------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...|+|+++.--+.           +...-..+++.+.+.++||.+++..+
T Consensus        85 ~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  135 (481)
T 2o3j_A           85 AEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS  135 (481)
T ss_dssp             HHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             hcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            35899998742211           11236778899999999998887654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.53  E-value=0.093  Score=49.25  Aligned_cols=103  Identities=18%  Similarity=0.170  Sum_probs=64.0

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhc---CCCCCCCeEEEEccccccCcCCCCccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSS---DPDLSTRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~---~~gl~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      +..||..||+|.+|.+...+...  .|. .|+.+|++++.++........   ..+...++++. .|.    .++...|+
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~--~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~----~al~~aD~   75 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQ--KNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS-NTY----DDLAGADV   75 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE-CCG----GGGTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC-CCH----HHhCCCCE
Confidence            45699999999988875444433  243 699999999877643222221   01223445542 443    23457899


Q ss_pred             EEecccc----CCC-------------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALV----GMD-------------KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalv----gm~-------------~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |++++-+    ++.             .+-+.++++.+.+.. |.+.+++-+
T Consensus        76 Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~t  126 (322)
T 1t2d_A           76 VIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVT  126 (322)
T ss_dssp             EEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECS
T ss_pred             EEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            9988643    221             124677888887775 899876643

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=95.52  E-value=0.01  Score=53.05  Aligned_cols=87  Identities=20%  Similarity=0.286  Sum_probs=54.7

Q ss_pred             CEEEEEccCCChHHHHH-HHHhCCCCc----EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008          123 TKIAFIGSGPLPLTSIV-LAINHLTTT----CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~-LA~~~~~ga----~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      +||.+||+|.+|.+-.. |++   .|.    .|+.+|++++..+...+   . .|    +.+ ..|..++   ....|+|
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~---~g~~~~~~V~~~~r~~~~~~~~~~---~-~g----~~~-~~~~~e~---~~~aDvV   67 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMIN---KNIVSSNQIICSDLNTANLKNASE---K-YG----LTT-TTDNNEV---AKNADIL   67 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH---TTSSCGGGEEEECSCHHHHHHHHH---H-HC----CEE-CSCHHHH---HHHCSEE
T ss_pred             CeEEEECccHHHHHHHHHHHh---CCCCCCCeEEEEeCCHHHHHHHHH---H-hC----CEE-eCChHHH---HHhCCEE
Confidence            58999999988765432 333   254    89999999977665533   2 12    221 2222222   2358999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      +++-    +......+++++.+.++||..++
T Consensus        68 ilav----~~~~~~~v~~~l~~~l~~~~~vv   94 (247)
T 3gt0_A           68 ILSI----KPDLYASIINEIKEIIKNDAIIV   94 (247)
T ss_dssp             EECS----CTTTHHHHC---CCSSCTTCEEE
T ss_pred             EEEe----CHHHHHHHHHHHHhhcCCCCEEE
Confidence            9875    34567889999988899988665

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.50  E-value=0.099  Score=49.23  Aligned_cols=106  Identities=11%  Similarity=0.167  Sum_probs=65.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHH-HHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSK-ALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~-Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .+..||..||+|..|.+...+........+++-+|++++..+- +..+... ..+..++++..++-    .++...|+|+
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~-~~~~~~~~i~~~~~----~a~~~aDvVi   81 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNA-LPFTSPKKIYSAEY----SDAKDADLVV   81 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTT-GGGSCCCEEEECCG----GGGGGCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHH-HHhcCCeEEEECCH----HHhCCCCEEE
Confidence            5668999999999888876554432124589999999876643 4545443 22335666665432    2345789999


Q ss_pred             eccccC----CChhHH----HHHHHHHHHhc---cCCeEEEEE
Q 021008          199 LAALVG----MDKDEK----IRVIDHLAKYM---APGALLMLR  230 (318)
Q Consensus       199 ~aalvg----m~~~~k----~~vl~~l~r~L---kpGg~lv~r  230 (318)
                      +.+-++    |...+.    ..++.++.+.+   .|.|.+++-
T Consensus        82 i~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~  124 (326)
T 2zqz_A           82 ITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA  124 (326)
T ss_dssp             ECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            887552    211111    14455554433   799988875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.44  E-value=0.13  Score=48.44  Aligned_cols=107  Identities=15%  Similarity=0.188  Sum_probs=62.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHH-HHHHhhcCCC-CCCCeEEEEccccccCcCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSK-ALSLVSSDPD-LSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~-Ar~~~~~~~g-l~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ..+.||..||+|.+|.+............+++.+|++++.++- +..+... .. ++.++++..+|..    +....|+|
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~-~~~~~~~v~i~~~~~~----a~~~aDvV   77 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHG-KAFAPQPVKTSYGTYE----DCKDADIV   77 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHT-GGGSSSCCEEEEECGG----GGTTCSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhc-cccccCCeEEEeCcHH----HhCCCCEE
Confidence            4578999999998888765433322112489999999875442 3333322 11 2245666666543    33478999


Q ss_pred             Eecccc----CCChhH----HHHHHHHHHHhc---cCCeEEEEEc
Q 021008          198 FLAALV----GMDKDE----KIRVIDHLAKYM---APGALLMLRS  231 (318)
Q Consensus       198 ~~aalv----gm~~~~----k~~vl~~l~r~L---kpGg~lv~r~  231 (318)
                      ++.+-+    ||+..+    -.+++.++.+.+   .|.+.+++-+
T Consensus        78 vi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt  122 (326)
T 3pqe_A           78 CICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT  122 (326)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence            987644    333222    124444444443   5888776654

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.43  E-value=0.03  Score=55.89  Aligned_cols=112  Identities=13%  Similarity=0.083  Sum_probs=66.3

Q ss_pred             hhhHHHhhHHHHHHHhhccc--CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCe
Q 021008          100 YSNYIKLSQLEFNILTQHCS--RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRM  177 (318)
Q Consensus       100 ~~ny~~L~~~E~~~l~~~~~--~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri  177 (318)
                      |+|..-..+.-...+.+...  -.+++|+.+|.|++|......++.  .|++|+.+|+++.....+..     .|.    
T Consensus       241 fDn~yGt~~sl~dgi~r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa--~GA~Viv~D~~~~~a~~Aa~-----~g~----  309 (488)
T 3ond_A          241 FDNLYGCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQ--AGARVIVTEIDPICALQATM-----EGL----  309 (488)
T ss_dssp             THHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH-----TTC----
T ss_pred             hhhhccccHHHHHHHHHHcCCcccCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHH-----hCC----
Confidence            45555444444444433322  578999999999888877666665  49999999999976555432     121    


Q ss_pred             EEEEccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          178 FFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       178 ~f~~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                           ++.++......+|+|+...-.. +.     +-.+..+.|++|++|+ .-+++
T Consensus       310 -----dv~~lee~~~~aDvVi~atG~~-~v-----l~~e~l~~mk~gaiVv-NaG~~  354 (488)
T 3ond_A          310 -----QVLTLEDVVSEADIFVTTTGNK-DI-----IMLDHMKKMKNNAIVC-NIGHF  354 (488)
T ss_dssp             -----EECCGGGTTTTCSEEEECSSCS-CS-----BCHHHHTTSCTTEEEE-ESSST
T ss_pred             -----ccCCHHHHHHhcCEEEeCCCCh-hh-----hhHHHHHhcCCCeEEE-EcCCC
Confidence                 1222323334799888543210 11     1122357899998764 44443

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=95.43  E-value=0.039  Score=50.51  Aligned_cols=97  Identities=20%  Similarity=0.160  Sum_probs=61.0

Q ss_pred             CCEEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          122 PTKIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      .+||.+||+|.+|.+-.. |++.-.+...|+.+|++++..+..++   . .|    +++ ..|..+.   ....|+|+++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~---~-~g----i~~-~~~~~~~---~~~aDvVila   70 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKE---K-CG----VHT-TQDNRQG---ALNADVVVLA   70 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHH---T-TC----CEE-ESCHHHH---HSSCSEEEEC
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHH---H-cC----CEE-eCChHHH---HhcCCeEEEE
Confidence            368999999988765433 33311122289999999976655443   3 23    232 2233222   2368999987


Q ss_pred             cccCCChhHHHHHHHHHHHh-ccCCeEEEEEcCCCc
Q 021008          201 ALVGMDKDEKIRVIDHLAKY-MAPGALLMLRSAHGA  235 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~-LkpGg~lv~r~~~g~  235 (318)
                      -    +......+++++... ++++..++ ....|.
T Consensus        71 v----~p~~~~~vl~~l~~~~l~~~~iii-S~~agi  101 (280)
T 3tri_A           71 V----KPHQIKMVCEELKDILSETKILVI-SLAVGV  101 (280)
T ss_dssp             S----CGGGHHHHHHHHHHHHHTTTCEEE-ECCTTC
T ss_pred             e----CHHHHHHHHHHHHhhccCCCeEEE-EecCCC
Confidence            6    456788999999988 88776554 333443

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.41  E-value=0.017  Score=55.01  Aligned_cols=92  Identities=12%  Similarity=0.130  Sum_probs=60.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-CCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-LKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-l~~fD~V~  198 (318)
                      ...++|.+||+|.+|.+-....++  .|.+|+++|.+++..+.+++     .|.    .. ..|..++... ....|+|+
T Consensus         6 ~~~~kIgIIG~G~mG~slA~~L~~--~G~~V~~~dr~~~~~~~a~~-----~G~----~~-~~~~~e~~~~a~~~aDlVi   73 (341)
T 3ktd_A            6 DISRPVCILGLGLIGGSLLRDLHA--ANHSVFGYNRSRSGAKSAVD-----EGF----DV-SADLEATLQRAAAEDALIV   73 (341)
T ss_dssp             CCSSCEEEECCSHHHHHHHHHHHH--TTCCEEEECSCHHHHHHHHH-----TTC----CE-ESCHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH-----cCC----ee-eCCHHHHHHhcccCCCEEE
Confidence            345799999999888774433333  37899999999988877653     343    11 2333222110 12469999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      ++.    +......+++++... +||.+|+
T Consensus        74 lav----P~~~~~~vl~~l~~~-~~~~iv~   98 (341)
T 3ktd_A           74 LAV----PMTAIDSLLDAVHTH-APNNGFT   98 (341)
T ss_dssp             ECS----CHHHHHHHHHHHHHH-CTTCCEE
T ss_pred             EeC----CHHHHHHHHHHHHcc-CCCCEEE
Confidence            876    445677888888775 8886543

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.39  E-value=0.042  Score=51.81  Aligned_cols=104  Identities=20%  Similarity=0.187  Sum_probs=65.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHH-HHH---hhcCCCCCCCeEEEEccccccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKA-LSL---VSSDPDLSTRMFFHTTDIMNVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~A-r~~---~~~~~gl~~ri~f~~gDa~~l~~~l~~f  194 (318)
                      ..+.||..||+|..|.+...+...  .|. .|+-+|++++.++.. ..+   ... .+...++++. .|..+   .+...
T Consensus         7 ~~~~kI~VIGaG~vG~~lA~~la~--~g~~~V~L~D~~~~~~~~~~~~l~~~~~~-~~~~~~i~~t-~d~~e---a~~~a   79 (331)
T 1pzg_A            7 QRRKKVAMIGSGMIGGTMGYLCAL--RELADVVLYDVVKGMPEGKALDLSHVTSV-VDTNVSVRAE-YSYEA---ALTGA   79 (331)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSHHHHHHHHHHHHHHH-TTCCCCEEEE-CSHHH---HHTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECChhHHHHHHHHHHhhhhc-cCCCCEEEEe-CCHHH---HhCCC
Confidence            455799999999988875444332  243 799999999877762 222   112 2344566552 44431   23578


Q ss_pred             cEEEeccccC----C-----Ch--------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVG----M-----DK--------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvg----m-----~~--------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|++++-++    +     ..        +-+.++++.+.+.. |.+.+++-+
T Consensus        80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~t  132 (331)
T 1pzg_A           80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVT  132 (331)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred             CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEc
Confidence            9999887442    2     11        22778888888775 888876543

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.37  E-value=0.034  Score=51.07  Aligned_cols=91  Identities=19%  Similarity=0.294  Sum_probs=60.4

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      ..||.+||+|.+|........+  .|.+|+++|++++.++..++     .|    +++ ..|..++   .. .|+|+++-
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~--~G~~V~~~dr~~~~~~~~~~-----~g----~~~-~~~~~~~---~~-aDvvi~~v   78 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTE--WPGGVTVYDIRIEAMTPLAE-----AG----ATL-ADSVADV---AA-ADLIHITV   78 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTT--STTCEEEECSSTTTSHHHHH-----TT----CEE-CSSHHHH---TT-SSEEEECC
T ss_pred             CCeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHH-----CC----CEE-cCCHHHH---Hh-CCEEEEEC
Confidence            4689999999988764332222  37899999999987766543     22    222 2333333   23 89999775


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      -   +...-..+++.+.+.++||.+++-.+
T Consensus        79 p---~~~~~~~v~~~l~~~l~~g~ivv~~s  105 (296)
T 3qha_A           79 L---DDAQVREVVGELAGHAKPGTVIAIHS  105 (296)
T ss_dssp             S---SHHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred             C---ChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            2   12344567899999999998876654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.35  E-value=0.1  Score=50.89  Aligned_cols=76  Identities=9%  Similarity=-0.042  Sum_probs=49.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH-HHHHHHhhcCCCCCCCeEEEEccccccCcCCCC-ccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN-SKALSLVSSDPDLSTRMFFHTTDIMNVSSALKD-YEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai-~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~-fD~V  197 (318)
                      -.+++|++||.|+.|+++..+..+  .|.+|++.|..+... ...+ ..++ .    .+++..|.-.+  ..+.. +|+|
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~--~G~~V~~~D~~~~~~~~~~~-~L~~-~----gi~~~~g~~~~--~~~~~~~d~v   76 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAK--LGAIVTVNDGKPFDENPTAQ-SLLE-E----GIKVVCGSHPL--ELLDEDFCYM   76 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHH--TTCEEEEEESSCGGGCHHHH-HHHH-T----TCEEEESCCCG--GGGGSCEEEE
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEeCCcccCChHHH-HHHh-C----CCEEEECCChH--HhhcCCCCEE
Confidence            357899999999999987666655  499999999965321 1222 2333 2    35676665432  11134 9999


Q ss_pred             EeccccCC
Q 021008          198 FLAALVGM  205 (318)
Q Consensus       198 ~~aalvgm  205 (318)
                      +++.-+..
T Consensus        77 v~spgi~~   84 (451)
T 3lk7_A           77 IKNPGIPY   84 (451)
T ss_dssp             EECTTSCT
T ss_pred             EECCcCCC
Confidence            88765543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.34  E-value=0.063  Score=49.93  Aligned_cols=93  Identities=16%  Similarity=0.239  Sum_probs=59.6

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      ..++|.+||+|.+|........+  .|.+|+++|++++..+...   +  .|    +++ ..+..++   ....|+|+++
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~~~~~~~l~---~--~g----~~~-~~~~~e~---~~~aDvVi~~   94 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCE--AGYALQVWNRTPARAASLA---A--LG----ATI-HEQARAA---ARDADIVVSM   94 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHH---T--TT----CEE-ESSHHHH---HTTCSEEEEC
T ss_pred             CCCEEEEECccHHHHHHHHHHHh--CCCeEEEEcCCHHHHHHHH---H--CC----CEe-eCCHHHH---HhcCCEEEEE
Confidence            45799999999998764333222  4889999999997665543   2  22    232 2333332   2368999976


Q ss_pred             cccCCChhHHHHHHH--HHHHhccCCeEEEEEc
Q 021008          201 ALVGMDKDEKIRVID--HLAKYMAPGALLMLRS  231 (318)
Q Consensus       201 alvgm~~~~k~~vl~--~l~r~LkpGg~lv~r~  231 (318)
                      --   +...-..++.  .+...++||..++-.+
T Consensus        95 vp---~~~~~~~v~~~~~~~~~l~~~~~vi~~s  124 (320)
T 4dll_A           95 LE---NGAVVQDVLFAQGVAAAMKPGSLFLDMA  124 (320)
T ss_dssp             CS---SHHHHHHHHTTTCHHHHCCTTCEEEECS
T ss_pred             CC---CHHHHHHHHcchhHHhhCCCCCEEEecC
Confidence            52   1234455665  6778899998876654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=95.30  E-value=0.032  Score=57.05  Aligned_cols=110  Identities=18%  Similarity=0.176  Sum_probs=72.7

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhC------CC---C--cEEEEEeC---ChHHHHHHHH-----------HhhcCC----
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINH------LT---T--TCFDNYDI---DPSANSKALS-----------LVSSDP----  171 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~------~~---g--a~V~gvDi---d~~ai~~Ar~-----------~~~~~~----  171 (318)
                      +.-+||++|-| .|+..+...+..      .|   +  -+++++|.   +++.+.++-+           +.+.-.    
T Consensus        66 ~~~~i~e~gfG-~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (676)
T 3ps9_A           66 PLFVVAESGFG-TGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  144 (676)
T ss_dssp             SEEEEEEECCT-TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCS
T ss_pred             CceEEEEeCCc-hHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCC
Confidence            33599999999 689887665432      01   2  45899999   8877775433           322200    


Q ss_pred             CC--------CCCeEEEEccccccCcCC-----CCccEEEeccccCC-ChhH-HHHHHHHHHHhccCCeEEEEEc
Q 021008          172 DL--------STRMFFHTTDIMNVSSAL-----KDYEVVFLAALVGM-DKDE-KIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       172 gl--------~~ri~f~~gDa~~l~~~l-----~~fD~V~~aalvgm-~~~~-k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |.        .-++++..||+.+....+     ..||++|++++-+- +.+. -.+++..+++.++|||++....
T Consensus       145 ~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          145 GCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT  219 (676)
T ss_dssp             EEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred             CceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence            11        134567889988643333     47999999987521 1111 3679999999999999998765

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.30  E-value=0.034  Score=50.53  Aligned_cols=89  Identities=15%  Similarity=0.190  Sum_probs=56.3

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      .+|.+||+|.+|.........  .|.+|+.+|.+++..+..++     .|    +.+ ..|..++   ....|+|+++.-
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~~~~~~~~~~-----~g----~~~-~~~~~~~---~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLK--AGYSLVVSDRNPEAIADVIA-----AG----AET-ASTAKAI---AEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH-----TT----CEE-CSSHHHH---HHHCSEEEECCS
T ss_pred             ceEEEECchHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHH-----CC----Cee-cCCHHHH---HhCCCEEEEECC
Confidence            589999999988775433333  37899999999987665433     12    221 2222222   235899997752


Q ss_pred             cCCChhHHHHHH---HHHHHhccCCeEEEE
Q 021008          203 VGMDKDEKIRVI---DHLAKYMAPGALLML  229 (318)
Q Consensus       203 vgm~~~~k~~vl---~~l~r~LkpGg~lv~  229 (318)
                         +...-..++   +.+.+.++||..++-
T Consensus        71 ---~~~~~~~~~~~~~~l~~~l~~~~~vv~   97 (299)
T 1vpd_A           71 ---NSPHVKEVALGENGIIEGAKPGTVLID   97 (299)
T ss_dssp             ---SHHHHHHHHHSTTCHHHHCCTTCEEEE
T ss_pred             ---CHHHHHHHHhCcchHhhcCCCCCEEEE
Confidence               123344566   577788999987754

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=95.29  E-value=0.013  Score=57.68  Aligned_cols=112  Identities=8%  Similarity=0.025  Sum_probs=69.6

Q ss_pred             hhhHHHhhHHHHHHHhhccc--CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCe
Q 021008          100 YSNYIKLSQLEFNILTQHCS--RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRM  177 (318)
Q Consensus       100 ~~ny~~L~~~E~~~l~~~~~--~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri  177 (318)
                      ++|+.-..+.-...+.+...  -.+++|..||.|.+|......++.+  |++|+++|+++.....|..     .|.    
T Consensus       187 ~Dn~~Gt~~slldgi~ratg~~L~GktVgIiG~G~IG~~vA~~Lka~--Ga~Viv~D~~p~~a~~A~~-----~G~----  255 (436)
T 3h9u_A          187 FDNLYGCRESLVDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGF--GARVVVTEVDPINALQAAM-----EGY----  255 (436)
T ss_dssp             THHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH-----TTC----
T ss_pred             hhccccchHHHHHHHHHhcCCcccCCEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCChhhhHHHHH-----hCC----
Confidence            56665555444444443322  5789999999999998888888764  9999999999965544432     222    


Q ss_pred             EEEEccccccCcCCCCccEEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          178 FFHTTDIMNVSSALKDYEVVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       178 ~f~~gDa~~l~~~l~~fD~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                      ++  .+..+   .+...|+|++..-. ++       +=++..+.||||++| ++-++|.
T Consensus       256 ~~--~sL~e---al~~ADVVilt~gt~~i-------I~~e~l~~MK~gAIV-INvgRg~  301 (436)
T 3h9u_A          256 QV--LLVED---VVEEAHIFVTTTGNDDI-------ITSEHFPRMRDDAIV-CNIGHFD  301 (436)
T ss_dssp             EE--CCHHH---HTTTCSEEEECSSCSCS-------BCTTTGGGCCTTEEE-EECSSSG
T ss_pred             ee--cCHHH---HHhhCCEEEECCCCcCc-------cCHHHHhhcCCCcEE-EEeCCCC
Confidence            21  23333   34578998864311 11       111345789999766 5555553

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=95.27  E-value=0.031  Score=52.15  Aligned_cols=96  Identities=13%  Similarity=0.171  Sum_probs=60.3

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCC-------cEEEEEeCChH-----HHHHHHHHhhc---CCC--CCCCeEEEEccc
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTT-------TCFDNYDIDPS-----ANSKALSLVSS---DPD--LSTRMFFHTTDI  184 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~g-------a~V~gvDid~~-----ai~~Ar~~~~~---~~g--l~~ri~f~~gDa  184 (318)
                      +||.+||+|.+|.+.. .|++.   |       ..|+.+|++++     ..+..++.-..   ..|  +..++.+. .|.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~---g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~   84 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGN---AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAV-PDV   84 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH---HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEE-SSH
T ss_pred             CeEEEECCCHHHHHHHHHHHhc---CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEE-cCH
Confidence            5899999998776643 34442   5       78999999987     55544432111   011  22344432 333


Q ss_pred             cccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          185 MNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       185 ~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      .+.   ...+|+|+++-    +......+++++...++||..++.
T Consensus        85 ~~~---~~~aD~Vilav----~~~~~~~v~~~i~~~l~~~~ivv~  122 (354)
T 1x0v_A           85 VQA---AEDADILIFVV----PHQFIGKICDQLKGHLKANATGIS  122 (354)
T ss_dssp             HHH---HTTCSEEEECC----CGGGHHHHHHHHTTCSCTTCEEEE
T ss_pred             HHH---HcCCCEEEEeC----CHHHHHHHHHHHHhhCCCCCEEEE
Confidence            221   23689999875    345678899999888988876654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=95.27  E-value=0.096  Score=48.84  Aligned_cols=101  Identities=19%  Similarity=0.231  Sum_probs=58.3

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCc--EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTT--CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga--~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      +||..||+|.+|.+.......  .|.  .|+.+|++++.++...........+....++...|.    ......|+|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~--~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~----~~~~~aDvViia   74 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLM--KGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY----ADLKGSDVVIVA   74 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG----GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCH----HHhCCCCEEEEc
Confidence            489999999888765433322  254  899999999876653321111000112233333342    234579999988


Q ss_pred             cccCC----Ch--------hHHHHHHHHHHHhccCCeEEEEE
Q 021008          201 ALVGM----DK--------DEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       201 alvgm----~~--------~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      .-.+-    ..        +-+.++++.+.+. .|++.+++-
T Consensus        75 v~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~ii~~  115 (319)
T 1a5z_A           75 AGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVV  115 (319)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEe
Confidence            75421    11        1245666677666 588877663

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.23  E-value=0.051  Score=48.94  Aligned_cols=88  Identities=15%  Similarity=0.058  Sum_probs=56.1

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      ++|.+||+|.+|........  . |.+|+.+|++++..+..++.     |.    .+.  +..+   .....|+|+++.-
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~--~-g~~V~~~~~~~~~~~~~~~~-----g~----~~~--~~~~---~~~~~D~vi~~v~   64 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLA--R-RFPTLVWNRTFEKALRHQEE-----FG----SEA--VPLE---RVAEARVIFTCLP   64 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHH--T-TSCEEEECSSTHHHHHHHHH-----HC----CEE--CCGG---GGGGCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHHh--C-CCeEEEEeCCHHHHHHHHHC-----CC----ccc--CHHH---HHhCCCEEEEeCC
Confidence            37999999998876433322  3 77899999999876655432     21    111  1112   1236899997752


Q ss_pred             cCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          203 VGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                         +...-..+++++.+.++||..++.-
T Consensus        65 ---~~~~~~~v~~~l~~~l~~~~~vv~~   89 (289)
T 2cvz_A           65 ---TTREVYEVAEALYPYLREGTYWVDA   89 (289)
T ss_dssp             ---SHHHHHHHHHHHTTTCCTTEEEEEC
T ss_pred             ---ChHHHHHHHHHHHhhCCCCCEEEEC
Confidence               1223455778888889998877643

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.20  E-value=0.025  Score=52.37  Aligned_cols=97  Identities=10%  Similarity=0.085  Sum_probs=54.4

Q ss_pred             CEEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHH-hhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          123 TKIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSL-VSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~-~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      +||+.||+|.+|.+-.. |++   .|..|+.++.++ . +..++. ..- .+.....++..-.+.+-+.....+|+|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~---~g~~V~~~~r~~-~-~~i~~~g~~~-~~~~g~~~~~~~~~~~~~~~~~~~D~vila   76 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQR---SGEDVHFLLRRD-Y-EAIAGNGLKV-FSINGDFTLPHVKGYRAPEEIGPMDLVLVG   76 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHH---TSCCEEEECSTT-H-HHHHHTCEEE-EETTCCEEESCCCEESCHHHHCCCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHH---CCCeEEEEEcCc-H-HHHHhCCCEE-EcCCCeEEEeeceeecCHHHcCCCCEEEEe
Confidence            58999999998876433 443   378999999987 2 332221 000 001112222000011111123479999987


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      -    ....-..+++.+...++|+..++.
T Consensus        77 v----k~~~~~~~l~~l~~~l~~~~~iv~  101 (312)
T 3hn2_A           77 L----KTFANSRYEELIRPLVEEGTQILT  101 (312)
T ss_dssp             C----CGGGGGGHHHHHGGGCCTTCEEEE
T ss_pred             c----CCCCcHHHHHHHHhhcCCCCEEEE
Confidence            5    223344688999999999886654

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.17  E-value=0.065  Score=50.03  Aligned_cols=102  Identities=18%  Similarity=0.254  Sum_probs=60.6

Q ss_pred             CCCCEEEEEccCCChH-HHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPL-TSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~-tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .+..||..||+|.+|. .+..++.+ .....|+-+|+++++...+..+...  .. .+++. ++|.    .++...|+|+
T Consensus        12 ~~~~kV~ViGaG~vG~~~a~~l~~~-g~~~ev~L~Di~~~~~g~a~dl~~~--~~-~~i~~-t~d~----~~l~~aD~Vi   82 (303)
T 2i6t_A           12 KTVNKITVVGGGELGIACTLAISAK-GIADRLVLLDLSEGTKGATMDLEIF--NL-PNVEI-SKDL----SASAHSKVVI   82 (303)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECCC-----CHHHHHHH--TC-TTEEE-ESCG----GGGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEcCCcchHHHHHHHhhh--cC-CCeEE-eCCH----HHHCCCCEEE
Confidence            3457999999996553 23344443 1244899999999766666666543  12 36766 3453    3456899999


Q ss_pred             eccccC---C--------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVG---M--------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvg---m--------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +++-++   |        +.+-+.++++.+.+.. |.+.+++-+
T Consensus        83 ~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~s  125 (303)
T 2i6t_A           83 FTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVAS  125 (303)
T ss_dssp             ECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECS
T ss_pred             EcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcC
Confidence            887432   1        1234677777777765 899876643

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.14  E-value=0.087  Score=49.83  Aligned_cols=107  Identities=11%  Similarity=0.201  Sum_probs=61.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHH-HHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANS-KALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~-~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+.||..||+|.+|.+............+++-+|++++..+ .+..+... ..+..++++..+|-.+    ....|+|+
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~-~~~~~~~~i~~~~~~a----~~~aDiVv   81 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDA-LPFTSPKKIYSAEYSD----AKDADLVV   81 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTT-GGGSCCCEEEECCGGG----GTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhh-hhhcCCcEEEECcHHH----hcCCCEEE
Confidence            677899999999888876544332212348999999987443 34444332 2222456666655433    45789999


Q ss_pred             ecccc----CCChhH----HHHHHHHHHHhc---cCCeEEEEEc
Q 021008          199 LAALV----GMDKDE----KIRVIDHLAKYM---APGALLMLRS  231 (318)
Q Consensus       199 ~aalv----gm~~~~----k~~vl~~l~r~L---kpGg~lv~r~  231 (318)
                      +.+-+    ||+..+    -..++.++.+.+   .|.+.+++-+
T Consensus        82 i~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt  125 (326)
T 3vku_A           82 ITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA  125 (326)
T ss_dssp             ECCCCC----------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred             ECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            87644    332111    123344444433   5888776654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.10  E-value=0.08  Score=49.19  Aligned_cols=103  Identities=19%  Similarity=0.206  Sum_probs=62.6

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHH-HHHhhc--CCCCCCCeEEEEccccccCcCCCCccE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKA-LSLVSS--DPDLSTRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~A-r~~~~~--~~gl~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      .+.||..||+|.+|.+.......  .|. .|+.+|++++.++.. ..+...  ..+...++++. .|.    ......|+
T Consensus         3 ~~~kI~VIGaG~~G~~ia~~la~--~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~----~a~~~aDi   75 (317)
T 2ewd_A            3 ERRKIAVIGSGQIGGNIAYIVGK--DNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT-DDY----ADISGSDV   75 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-SCG----GGGTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC-CCH----HHhCCCCE
Confidence            45799999999887765433322  255 899999999877652 222111  01223455542 343    23457899


Q ss_pred             EEeccccC----C--------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVG----M--------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvg----m--------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+++.-++    |        +..-+.++++.+.+. .|++.+++-+
T Consensus        76 Vi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~-~~~~iii~~s  121 (317)
T 2ewd_A           76 VIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVICIT  121 (317)
T ss_dssp             EEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECC
T ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEeC
Confidence            99887331    1        123467788888776 5788776544

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=95.10  E-value=0.026  Score=52.63  Aligned_cols=93  Identities=12%  Similarity=0.158  Sum_probs=66.1

Q ss_pred             EEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEEEecc
Q 021008          126 AFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVVFLAA  201 (318)
Q Consensus       126 L~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V~~aa  201 (318)
                      ++=|||.+|+.++.      .+.+++-+|.++++++.=+++++.    ..+++++.+|+....    ..-..||+||++=
T Consensus        98 lfaGSGaLgiEaLS------~~d~~vfvE~~~~a~~~L~~Nl~~----~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           98 YYPGSPYFAINQLR------SQDRLYLCELHPTEYNFLLKLPHF----NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             EEECHHHHHHHHSC------TTSEEEEECCSHHHHHHHTTSCCT----TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             EeCCcHHHHHHHcC------CCCeEEEEeCCHHHHHHHHHHhCc----CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            67788755444321      367999999999999988888764    478999999987521    2223699999986


Q ss_pred             ccCCChhHHHHHHHHHHH--hccCCeEEEE
Q 021008          202 LVGMDKDEKIRVIDHLAK--YMAPGALLML  229 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r--~LkpGg~lv~  229 (318)
                      =-.+ +.+..++++.+.+  .+.|+|++++
T Consensus       168 PYe~-k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          168 SYER-KEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             CCCS-TTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCC-CcHHHHHHHHHHHhCccCCCeEEEE
Confidence            2221 3466777777765  5668888865

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=95.10  E-value=0.037  Score=55.12  Aligned_cols=99  Identities=14%  Similarity=0.139  Sum_probs=63.9

Q ss_pred             CCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          122 PTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       122 ~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      .++|.+||.|.+|.+. ..|++   .|.+|+++|++++.++...+.-.    .+.++.. ..+..++...+...|+|+++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~---~G~~V~v~dr~~~~~~~l~~~g~----~g~~i~~-~~s~~e~v~~l~~aDvVil~   75 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMND---HGFVVCAFNRTVSKVDDFLANEA----KGTKVVG-AQSLKEMVSKLKKPRRIILL   75 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSTHHHHHHHHTTT----TTSSCEE-CSSHHHHHHTBCSSCEEEEC
T ss_pred             CCEEEEEChhHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHhccc----CCCceec-cCCHHHHHhhccCCCEEEEe
Confidence            3689999999988764 33443   38899999999987766543211    1223322 23444443344468999976


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      --.   ...-..+++++...|+||.+++--+
T Consensus        76 Vp~---~~~v~~vl~~l~~~L~~g~iIId~s  103 (484)
T 4gwg_A           76 VKA---GQAVDDFIEKLVPLLDTGDIIIDGG  103 (484)
T ss_dssp             SCS---SHHHHHHHHHHGGGCCTTCEEEECS
T ss_pred             cCC---hHHHHHHHHHHHHhcCCCCEEEEcC
Confidence            421   1344568899999999988765433

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=95.07  E-value=0.024  Score=53.42  Aligned_cols=94  Identities=21%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH-HHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA-NSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a-i~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      +++|.+||+|.+|.+-....+.  .|.+|+.+|.+++. .+.++    . .|.    ++.  |..+.   ....|+|+++
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~--~G~~V~~~~~~~~~~~~~a~----~-~G~----~~~--~~~e~---~~~aDvVila   79 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKD--SGVDVTVGLRSGSATVAKAE----A-HGL----KVA--DVKTA---VAAADVVMIL   79 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHH--TTCCEEEECCTTCHHHHHHH----H-TTC----EEE--CHHHH---HHTCSEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHH--CcCEEEEEECChHHHHHHHH----H-CCC----EEc--cHHHH---HhcCCEEEEe
Confidence            4689999999887775433333  37789999999754 44443    3 343    222  33332   2368999987


Q ss_pred             cccCCChhHHHHHHH-HHHHhccCCeEEEEEcCCCccc
Q 021008          201 ALVGMDKDEKIRVID-HLAKYMAPGALLMLRSAHGARA  237 (318)
Q Consensus       201 alvgm~~~~k~~vl~-~l~r~LkpGg~lv~r~~~g~r~  237 (318)
                      .    +...-..++. ++...++||..|+.  .+|...
T Consensus        80 v----p~~~~~~v~~~~i~~~l~~~~ivi~--~~gv~~  111 (338)
T 1np3_A           80 T----PDEFQGRLYKEEIEPNLKKGATLAF--AHGFSI  111 (338)
T ss_dssp             S----CHHHHHHHHHHHTGGGCCTTCEEEE--SCCHHH
T ss_pred             C----CcHHHHHHHHHHHHhhCCCCCEEEE--cCCchh
Confidence            6    3344467887 88889999987763  355543

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.05  E-value=0.056  Score=53.33  Aligned_cols=101  Identities=18%  Similarity=0.248  Sum_probs=62.7

Q ss_pred             CEEEEEccCCChHH-HHHHHHhCCCCcEEEEEeCChHHHHHHHHH---hhcCCCC---------CCCeEEEEccccccCc
Q 021008          123 TKIAFIGSGPLPLT-SIVLAINHLTTTCFDNYDIDPSANSKALSL---VSSDPDL---------STRMFFHTTDIMNVSS  189 (318)
Q Consensus       123 ~rVL~IGsGplp~t-ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~---~~~~~gl---------~~ri~f~~gDa~~l~~  189 (318)
                      .+|..||.|=.|++ +.++|+.   |.+|+|+|+|++.++.=++-   +.+ .|+         +.+.+|. .|..+   
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~---G~~V~g~Did~~kV~~ln~G~~pi~E-pgl~ell~~~~~~g~l~~t-t~~~~---   93 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALL---GHRVVGYDVNPSIVERLRAGRPHIYE-PGLEEALGRALSSGRLSFA-ESAEE---   93 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCEEEEECSCHHHHHHHHTTCCSSCC-TTHHHHHHHHHHTTCEEEC-SSHHH---
T ss_pred             CEEEEEccCHHHHHHHHHHHhC---CCcEEEEECCHHHHHHHHCCCCCCCC-CCHHHHHHHHHHcCCeeEE-cCHHH---
Confidence            69999999988874 4677763   88999999999988764321   000 111         2455553 22222   


Q ss_pred             CCCCccEEEeccccCC------ChhHHHHHHHHHHHhccC---CeEEEEEc
Q 021008          190 ALKDYEVVFLAALVGM------DKDEKIRVIDHLAKYMAP---GALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalvgm------~~~~k~~vl~~l~r~Lkp---Gg~lv~r~  231 (318)
                      .....|++|++--.+.      +...-..+.+.+.+.|++   |.++++.+
T Consensus        94 ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eS  144 (444)
T 3vtf_A           94 AVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKS  144 (444)
T ss_dssp             HHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECS
T ss_pred             HHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeC
Confidence            1235788886632111      223345677888888975   45777776

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.04  E-value=0.13  Score=50.42  Aligned_cols=101  Identities=21%  Similarity=0.291  Sum_probs=64.9

Q ss_pred             CCCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCC---------CCCeEEEEcccccc
Q 021008          120 RFPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDL---------STRMFFHTTDIMNV  187 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl---------~~ri~f~~gDa~~l  187 (318)
                      ..+.+.-.||.|-+|++. .+||+   .|.+|+++|+|++.++.-++--..  ..|+         ..+++|-+ |    
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~---~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~tt-d----   80 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAK---HGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVST-T----   80 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEES-S----
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeC-c----
Confidence            567899999999988864 56665   389999999999988876542100  0121         24566532 3    


Q ss_pred             CcCCCCccEEEeccccCC--------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          188 SSALKDYEVVFLAALVGM--------DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 ~~~l~~fD~V~~aalvgm--------~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                         ....|+||++---+.        +...=....+.+.+.|+||.+++..+
T Consensus        81 ---~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~S  129 (431)
T 3ojo_A           81 ---PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVES  129 (431)
T ss_dssp             ---CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECS
T ss_pred             ---hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEec
Confidence               235899887632111        11123556788999999999888776

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=95.03  E-value=0.039  Score=50.79  Aligned_cols=96  Identities=13%  Similarity=0.152  Sum_probs=57.4

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeC--ChHHHHHHHHHhhc-CCCCC-CCeEEEEc-cccccCcCCCCccE
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDI--DPSANSKALSLVSS-DPDLS-TRMFFHTT-DIMNVSSALKDYEV  196 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDi--d~~ai~~Ar~~~~~-~~gl~-~ri~f~~g-Da~~l~~~l~~fD~  196 (318)
                      +||.+||+|.+|.+.. .|++   .|..|+.+|.  +++..+..++.-.. ..|.. .++++... |..+   ....+|+
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~D~   74 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVD---NGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEK---CLENAEV   74 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH---HCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHH---HHTTCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHH---HHhcCCE
Confidence            3799999998776532 3443   3779999999  98776654432110 00100 12222210 2212   1247899


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      |+++-    +......+++.+.. ++||..++.
T Consensus        75 vi~~v----~~~~~~~v~~~i~~-l~~~~~vv~  102 (335)
T 1txg_A           75 VLLGV----STDGVLPVMSRILP-YLKDQYIVL  102 (335)
T ss_dssp             EEECS----CGGGHHHHHHHHTT-TCCSCEEEE
T ss_pred             EEEcC----ChHHHHHHHHHHhc-CCCCCEEEE
Confidence            99875    33466778888988 988876543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.95  E-value=0.026  Score=52.04  Aligned_cols=75  Identities=20%  Similarity=0.188  Sum_probs=52.3

Q ss_pred             CEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      ++|.+|| +|.+|.+......+  .|..|+++|.+++.                       +..+   .....|+|+++-
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~--~G~~V~~~~~~~~~-----------------------~~~~---~~~~aDvVilav   73 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRA--SGYPISILDREDWA-----------------------VAES---ILANADVVIVSV   73 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHT--TTCCEEEECTTCGG-----------------------GHHH---HHTTCSEEEECS
T ss_pred             CEEEEEcCCCHHHHHHHHHHHh--CCCeEEEEECCccc-----------------------CHHH---HhcCCCEEEEeC
Confidence            5899999 99887764333332  47799999998751                       1111   123689999875


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                          +......+++++...++||.+|+.
T Consensus        74 ----p~~~~~~vl~~l~~~l~~~~iv~~   97 (298)
T 2pv7_A           74 ----PINLTLETIERLKPYLTENMLLAD   97 (298)
T ss_dssp             ----CGGGHHHHHHHHGGGCCTTSEEEE
T ss_pred             ----CHHHHHHHHHHHHhhcCCCcEEEE
Confidence                445677888999888999886654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.93  E-value=0.029  Score=51.10  Aligned_cols=90  Identities=17%  Similarity=0.146  Sum_probs=58.5

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      +||.+||+|.+|.+.. .|++   .|.+|+++|++++..+...+.     |    +.+ ..|..++   ....|+|+++-
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~~~~~-----g----~~~-~~~~~~~---~~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVK---AGCSVTIWNRSPEKAEELAAL-----G----AER-AATPCEV---VESCPVTFAML   65 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSSGGGGHHHHHT-----T----CEE-CSSHHHH---HHHCSEEEECC
T ss_pred             CEEEEEeecHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHHC-----C----Cee-cCCHHHH---HhcCCEEEEEc
Confidence            6899999998877643 3443   388999999999877665432     2    222 2222222   12579999765


Q ss_pred             ccCCChhHHHHHH---HHHHHhccCCeEEEEEc
Q 021008          202 LVGMDKDEKIRVI---DHLAKYMAPGALLMLRS  231 (318)
Q Consensus       202 lvgm~~~~k~~vl---~~l~r~LkpGg~lv~r~  231 (318)
                      -   +...-..++   +.+.+.++||..++-.+
T Consensus        66 p---~~~~~~~v~~~~~~l~~~l~~~~~vi~~s   95 (287)
T 3pef_A           66 A---DPAAAEEVCFGKHGVLEGIGEGRGYVDMS   95 (287)
T ss_dssp             S---SHHHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             C---CHHHHHHHHcCcchHhhcCCCCCEEEeCC
Confidence            1   123445666   78888999998776544

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.91  E-value=0.19  Score=44.64  Aligned_cols=66  Identities=8%  Similarity=-0.118  Sum_probs=45.7

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      ++||..|+|-+|........  ..|.+|++++.++...+...    .     .+++++.+|..++.  ..++|+|+..+
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~--~~g~~V~~~~r~~~~~~~~~----~-----~~~~~~~~D~~d~~--~~~~d~vi~~a   71 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALA--PQGWRIIGTSRNPDQMEAIR----A-----SGAEPLLWPGEEPS--LDGVTHLLIST   71 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHG--GGTCEEEEEESCGGGHHHHH----H-----TTEEEEESSSSCCC--CTTCCEEEECC
T ss_pred             CcEEEECCcHHHHHHHHHHH--HCCCEEEEEEcChhhhhhHh----h-----CCCeEEEecccccc--cCCCCEEEECC
Confidence            69999998654444322221  13889999999986543321    2     45899999999965  67899888554

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.90  E-value=0.048  Score=52.63  Aligned_cols=102  Identities=27%  Similarity=0.229  Sum_probs=59.6

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCC-------CCCCeEEEEccccccCcCCCC
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPD-------LSTRMFFHTTDIMNVSSALKD  193 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~g-------l~~ri~f~~gDa~~l~~~l~~  193 (318)
                      ++|.+||+|.+|.+.....   ..|.+|+++|++++.++..++--..  ..+       ...++++. .|..+   ....
T Consensus         1 MkI~VIG~G~vG~~~A~~L---a~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t-~~~~~---~~~~   73 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLL---SLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKAT-LDSKA---AYKE   73 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHH---TTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEE-SCHHH---HHHH
T ss_pred             CEEEEECCCHHHHHHHHHH---hCCCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEe-CCHHH---HhcC
Confidence            4799999998777643222   1278999999999877654321100  000       01233432 22211   1235


Q ss_pred             ccEEEeccccCC-------ChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          194 YEVVFLAALVGM-------DKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       194 fD~V~~aalvgm-------~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .|+|+++---..       +...-..+++.+.+ ++||.+++..+.
T Consensus        74 aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST  118 (402)
T 1dlj_A           74 AELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKST  118 (402)
T ss_dssp             CSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSC
T ss_pred             CCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCC
Confidence            899998742110       00136778889998 999988887553

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.90  E-value=0.035  Score=54.66  Aligned_cols=102  Identities=20%  Similarity=0.198  Sum_probs=61.6

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHH------------HhhcCCCCCCCeEEEEccccccCc
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALS------------LVSSDPDLSTRMFFHTTDIMNVSS  189 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~------------~~~~~~gl~~ri~f~~gDa~~l~~  189 (318)
                      ++|.+||+|.+|.+. ..|++. .+|.+|+++|++++.++..++            ++..  +...++++ +.|..+.  
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~-g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~--~~~~~~~~-t~~~~e~--   79 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHM-CPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVES--CRGKNLFF-STNIDDA--   79 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHH-CTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHH--HBTTTEEE-ESCHHHH--
T ss_pred             cEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHH--hhcCCEEE-ECCHHHH--
Confidence            689999999988764 445553 247899999999988776432            1110  00123444 2332221  


Q ss_pred             CCCCccEEEeccccCCC-----------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          190 ALKDYEVVFLAALVGMD-----------KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalvgm~-----------~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       ....|+|+++---+.+           ...-..+++.+.+.++||.+++..+
T Consensus        80 -~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  131 (467)
T 2q3e_A           80 -IKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKS  131 (467)
T ss_dssp             -HHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECS
T ss_pred             -HhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECC
Confidence             2357999976421111           1113567788889999988776544

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.86  E-value=0.065  Score=46.78  Aligned_cols=77  Identities=13%  Similarity=0.055  Sum_probs=50.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ...++|.+||+|.+|.+......+  .|.+|+.+|.+++                               .....|+|++
T Consensus        17 ~~~~~I~iiG~G~mG~~la~~l~~--~g~~V~~~~~~~~-------------------------------~~~~aD~vi~   63 (209)
T 2raf_A           17 FQGMEITIFGKGNMGQAIGHNFEI--AGHEVTYYGSKDQ-------------------------------ATTLGEIVIM   63 (209)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHH--TTCEEEEECTTCC-------------------------------CSSCCSEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCHH-------------------------------HhccCCEEEE
Confidence            356799999999877664332222  3789999998875                               2236899987


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                      +.    +...-..+++++...++ |.. ++.-..|.
T Consensus        64 av----~~~~~~~v~~~l~~~~~-~~~-vi~~~~g~   93 (209)
T 2raf_A           64 AV----PYPALAALAKQYATQLK-GKI-VVDITNPL   93 (209)
T ss_dssp             CS----CHHHHHHHHHHTHHHHT-TSE-EEECCCCB
T ss_pred             cC----CcHHHHHHHHHHHHhcC-CCE-EEEECCCC
Confidence            65    33455678888887887 554 44444443

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=94.73  E-value=0.068  Score=52.74  Aligned_cols=94  Identities=12%  Similarity=0.165  Sum_probs=60.3

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      .+|.+||+|.+|.... .|++   .|..|+.+|++++..+...+...     +.++.. ..|..++...++..|+|+++-
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~---~G~~V~v~dr~~~~~~~l~~~~~-----~~gi~~-~~s~~e~v~~l~~aDvVilav   76 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVES---RGYTVAIYNRTTSKTEEVFKEHQ-----DKNLVF-TKTLEEFVGSLEKPRRIMLMV   76 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHTT-----TSCEEE-CSSHHHHHHTBCSSCEEEECC
T ss_pred             CcEEEEeeHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHHHHhCc-----CCCeEE-eCCHHHHHhhccCCCEEEEEc
Confidence            5899999998876643 3443   37799999999987766544221     123332 234444333334589999775


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      -   +...-..+++++...++||.+++
T Consensus        77 p---~~~~v~~vl~~l~~~l~~g~iiI  100 (474)
T 2iz1_A           77 Q---AGAATDATIKSLLPLLDIGDILI  100 (474)
T ss_dssp             C---TTHHHHHHHHHHGGGCCTTCEEE
T ss_pred             c---CchHHHHHHHHHHhhCCCCCEEE
Confidence            2   11244568888999999988655

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.68  E-value=0.072  Score=47.77  Aligned_cols=105  Identities=9%  Similarity=0.065  Sum_probs=60.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++||.||+|..+...+.+..+  .|+.|+.|+.+..  ...+++...     .+++++..+-.+  .++.++|+|+.
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~--~GA~VtVvap~~~--~~l~~l~~~-----~~i~~i~~~~~~--~dL~~adLVIa   97 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQ--EGAAITVVAPTVS--AEINEWEAK-----GQLRVKRKKVGE--EDLLNVFFIVV   97 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGG--GCCCEEEECSSCC--HHHHHHHHT-----TSCEEECSCCCG--GGSSSCSEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCCCC--HHHHHHHHc-----CCcEEEECCCCH--hHhCCCCEEEE
Confidence            578999999999877766554433  4899999876542  223334443     457777655432  45668999996


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC-CcccccccCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH-GARAFLYPVV  243 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~-g~r~~lYP~v  243 (318)
                      +--   +.+.    =..++...+ -|+++-+-.+ ....|..|.+
T Consensus        98 AT~---d~~~----N~~I~~~ak-~gi~VNvvD~p~~~~f~~Pai  134 (223)
T 3dfz_A           98 ATN---DQAV----NKFVKQHIK-NDQLVNMASSFSDGNIQIPAQ  134 (223)
T ss_dssp             CCC---CTHH----HHHHHHHSC-TTCEEEC-----CCSEECCEE
T ss_pred             CCC---CHHH----HHHHHHHHh-CCCEEEEeCCcccCeEEEeeE
Confidence            541   2222    222344445 4555443333 3445887754

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=94.66  E-value=0.063  Score=53.21  Aligned_cols=96  Identities=10%  Similarity=0.173  Sum_probs=61.1

Q ss_pred             CCCEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          121 FPTKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..++|.+||+|.+|.+.. .|++   .|.+|+.+|++++.++...+..   .|  ..+.. ..|..++...+...|+|++
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~---~G~~V~v~~r~~~~~~~l~~~~---~~--~gi~~-~~s~~e~v~~l~~aDvVil   84 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIES---RGYTVSIFNRSREKTEEVIAEN---PG--KKLVP-YYTVKEFVESLETPRRILL   84 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHS---TT--SCEEE-CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCeEEEEccHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHhhC---CC--CCeEE-eCCHHHHHhCCCCCCEEEE
Confidence            457899999998877643 3333   4789999999998776554421   11  23332 2343333333335899997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      +--.   ...-..+++++...++||.+|+
T Consensus        85 ~Vp~---~~~v~~vl~~l~~~l~~g~iII  110 (480)
T 2zyd_A           85 MVKA---GAGTDAAIDSLKPYLDKGDIII  110 (480)
T ss_dssp             CSCS---SSHHHHHHHHHGGGCCTTCEEE
T ss_pred             ECCC---HHHHHHHHHHHHhhcCCCCEEE
Confidence            6521   1245678899999999987665

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.64  E-value=0.15  Score=46.99  Aligned_cols=99  Identities=17%  Similarity=0.081  Sum_probs=57.1

Q ss_pred             CEEEEEccCCChHHHHH-HHHhCCCC--cEEEEEeCChHHHHHHH-HHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          123 TKIAFIGSGPLPLTSIV-LAINHLTT--TCFDNYDIDPSANSKAL-SLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~-LA~~~~~g--a~V~gvDid~~ai~~Ar-~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      +||..||+|.+|.+... |++.   |  ..|+.+|++++..+... .+.....-...++++...|.    ......|+|+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~---g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~----~~~~~aDvVi   74 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQ---GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW----AALADADVVI   74 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG----GGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH----HHhCCCCEEE
Confidence            48999999988777533 3332   4  68999999997665433 22111001123455544453    2345799999


Q ss_pred             eccccCCC----h------------hHHHHHHHHHHHhccCCeEEEE
Q 021008          199 LAALVGMD----K------------DEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       199 ~aalvgm~----~------------~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ++.-.+..    .            +-..++++.+.+. .|++.+++
T Consensus        75 iav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~~~~~ii~  120 (309)
T 1hyh_A           75 STLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVV  120 (309)
T ss_dssp             ECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred             EecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEE
Confidence            87643110    0            0124666666654 47787765

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.57  E-value=0.053  Score=50.31  Aligned_cols=91  Identities=19%  Similarity=0.207  Sum_probs=56.8

Q ss_pred             CCCEEEEEccCCChHHH-HHHHHhCCCCc-EEEEEeCC--hHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccE
Q 021008          121 FPTKIAFIGSGPLPLTS-IVLAINHLTTT-CFDNYDID--PSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       121 ~~~rVL~IGsGplp~ta-i~LA~~~~~ga-~V~gvDid--~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      ...+|.+||+|.+|.+. ..|++   .|. .|+++|++  ++..+.+++     .|    +.+ ..+..++   ....|+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~---~G~~~V~~~dr~~~~~~~~~~~~-----~g----~~~-~~~~~e~---~~~aDv   86 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQ---AGAIDMAAYDAASAESWRPRAEE-----LG----VSC-KASVAEV---AGECDV   86 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHH---HSCCEEEEECSSCHHHHHHHHHH-----TT----CEE-CSCHHHH---HHHCSE
T ss_pred             CCCEEEEECccHHHHHHHHHHHH---CCCCeEEEEcCCCCHHHHHHHHH-----CC----CEE-eCCHHHH---HhcCCE
Confidence            34699999999887653 33443   277 99999997  465554432     23    222 2222222   235799


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+++--    ...-.++++.+...++||.+++-.+
T Consensus        87 Vi~~vp----~~~~~~~~~~l~~~l~~~~ivvd~s  117 (312)
T 3qsg_A           87 IFSLVT----AQAALEVAQQAGPHLCEGALYADFT  117 (312)
T ss_dssp             EEECSC----TTTHHHHHHHHGGGCCTTCEEEECC
T ss_pred             EEEecC----chhHHHHHHhhHhhcCCCCEEEEcC
Confidence            997642    2334457899999999998776443

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.51  E-value=0.067  Score=50.27  Aligned_cols=95  Identities=12%  Similarity=0.168  Sum_probs=59.2

Q ss_pred             EEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHHhhc---CCC--CCCCeEEEEccccccCcCCCCccEE
Q 021008          124 KIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSLVSS---DPD--LSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       124 rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~---~~g--l~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ||.+||+|.+|.+... |++   .|..|+.+|.+++.++..++.-..   ..|  +..++.+. .|..+.   ...+|+|
T Consensus        17 kI~iIG~G~mG~~la~~L~~---~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~aDvV   89 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSK---KCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFT-SDVEKA---YNGAEII   89 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTT---TEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEE-SCHHHH---HTTCSSE
T ss_pred             eEEEECCCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHcCcccccccccccccceeee-CCHHHH---HcCCCEE
Confidence            8999999987665322 222   477999999999877766543211   001  12234432 233221   2368999


Q ss_pred             EeccccCCChhHHHHHHHH----HHHhccC-CeEEEE
Q 021008          198 FLAALVGMDKDEKIRVIDH----LAKYMAP-GALLML  229 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~----l~r~Lkp-Gg~lv~  229 (318)
                      +++-    +......++..    +...++| |.+++.
T Consensus        90 ilav----~~~~~~~v~~~~~~gl~~~l~~~~~ivv~  122 (366)
T 1evy_A           90 LFVI----PTQFLRGFFEKSGGNLIAYAKEKQVPVLV  122 (366)
T ss_dssp             EECC----CHHHHHHHHHHHCHHHHHHHHHHTCCEEE
T ss_pred             EECC----ChHHHHHHHHHhHHHHHHhcCccCCEEEE
Confidence            9875    34566778888    8888888 776544

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=94.50  E-value=0.064  Score=53.07  Aligned_cols=98  Identities=12%  Similarity=0.143  Sum_probs=59.8

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      ++|.+||+|.+|.... .|++   .|..|+.+|.+++..+...+.... ...+.++.. ..|..++...+...|+|+++-
T Consensus         2 MkIgVIG~G~mG~~lA~~La~---~G~~V~v~dr~~~~~~~l~~~~g~-~~~~~~i~~-~~~~~e~v~~l~~aDvVilaV   76 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAE---KGFKVAVFNRTYSKSEEFMKANAS-APFAGNLKA-FETMEAFAASLKKPRKALILV   76 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHTTT-STTGGGEEE-CSCHHHHHHHBCSSCEEEECC
T ss_pred             CEEEEEChHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHhcCC-CCCCCCeEE-ECCHHHHHhcccCCCEEEEec
Confidence            4799999998776643 3443   378999999999877665442110 001122332 233333322223589999775


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      -   +...-..+++++...++||.+++
T Consensus        77 p---~~~~v~~vl~~l~~~l~~g~iII  100 (478)
T 1pgj_A           77 Q---AGAATDSTIEQLKKVFEKGDILV  100 (478)
T ss_dssp             C---CSHHHHHHHHHHHHHCCTTCEEE
T ss_pred             C---ChHHHHHHHHHHHhhCCCCCEEE
Confidence            2   11244668889999999988665

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=94.49  E-value=0.043  Score=51.60  Aligned_cols=99  Identities=13%  Similarity=0.038  Sum_probs=63.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE---ccccccCcCCCCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT---TDIMNVSSALKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~---gDa~~l~~~l~~fD  195 (318)
                      ..++++||.+|+|++|+.++.+|+.. .|++|+++|.+++..+.++++     |...-+.+..   ..+.++. .-..+|
T Consensus       184 ~~~g~~VlV~GaG~vG~~avqlak~~-~Ga~Vi~~~~~~~~~~~~~~l-----Ga~~vi~~~~~~~~~v~~~~-~g~g~D  256 (359)
T 1h2b_A          184 LYPGAYVAIVGVGGLGHIAVQLLKVM-TPATVIALDVKEEKLKLAERL-----GADHVVDARRDPVKQVMELT-RGRGVN  256 (359)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESSHHHHHHHHHT-----TCSEEEETTSCHHHHHHHHT-TTCCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHh-----CCCEEEeccchHHHHHHHHh-CCCCCc
Confidence            46889999999999999999999853 389999999999988888653     3211111100   0111221 112799


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +||-..  | .  .....++...+.  +||+++.-.
T Consensus       257 vvid~~--G-~--~~~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          257 VAMDFV--G-S--QATVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             EEEESS--C-C--HHHHHHGGGGEE--EEEEEEECC
T ss_pred             EEEECC--C-C--chHHHHHHHhhc--CCCEEEEEe
Confidence            998544  2 1  111145555554  999988754

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=94.48  E-value=0.19  Score=46.61  Aligned_cols=105  Identities=23%  Similarity=0.344  Sum_probs=58.0

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHH-HHHHHhhcCCCCCCCeEEE-EccccccCcCCCCccEEEec
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANS-KALSLVSSDPDLSTRMFFH-TTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~-~Ar~~~~~~~gl~~ri~f~-~gDa~~l~~~l~~fD~V~~a  200 (318)
                      +||..||+|..|.+...+........+|+-+|++++.++ .+..+......+....++. +.| .   .++...|+|++.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~---~a~~~aDiVVia   76 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-Y---SLLKGSEIIVVT   76 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-G---GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-H---HHhCCCCEEEEC
Confidence            489999999888776543332211238999999998754 2222211100022333443 345 2   234578999988


Q ss_pred             ccc----CCChhH----HHHHHHHHHHhc---cCCeEEEEEc
Q 021008          201 ALV----GMDKDE----KIRVIDHLAKYM---APGALLMLRS  231 (318)
Q Consensus       201 alv----gm~~~~----k~~vl~~l~r~L---kpGg~lv~r~  231 (318)
                      +-+    ||+..+    -.+++.++.+.+   .|.+.+++-+
T Consensus        77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs  118 (294)
T 1oju_A           77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (294)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            755    343211    123344433332   6888887765

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.46  E-value=0.23  Score=44.05  Aligned_cols=107  Identities=10%  Similarity=0.065  Sum_probs=70.4

Q ss_pred             CCCCEEEEEccCC---ChHH-HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-------
Q 021008          120 RFPTKIAFIGSGP---LPLT-SIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-------  188 (318)
Q Consensus       120 ~~~~rVL~IGsGp---lp~t-ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-------  188 (318)
                      -.+++||..|++.   +|.. +..|++   .|++|+.++.++...+...++... .+ ..++.++.+|+.+..       
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~---~G~~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~~~~~D~~~~~~v~~~~~   79 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHE---AGARLIFTYAGERLEKSVHELAGT-LD-RNDSIILPCDVTNDAEIETCFA   79 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHHT-SS-SCCCEEEECCCSSSHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHH---CCCEEEEecCchHHHHHHHHHHHh-cC-CCCceEEeCCCCCHHHHHHHHH
Confidence            3578999999642   3432 344554   499999999998877777777766 33 238999999998732       


Q ss_pred             ---cCCCCccEEEeccccC-----------CChhHHH-----------HHHHHHHHhccCCeEEEEEc
Q 021008          189 ---SALKDYEVVFLAALVG-----------MDKDEKI-----------RVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       189 ---~~l~~fD~V~~aalvg-----------m~~~~k~-----------~vl~~l~r~LkpGg~lv~r~  231 (318)
                         ...+..|+++..+-+.           ++.++..           .+++.+.+.|+++|.++.-+
T Consensus        80 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  147 (266)
T 3oig_A           80 SIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT  147 (266)
T ss_dssp             HHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             HHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence               1123678877554321           2223333           25567778888888887765

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=94.43  E-value=0.058  Score=51.52  Aligned_cols=94  Identities=20%  Similarity=0.125  Sum_probs=58.3

Q ss_pred             CEEEEEccCCChHHHHH-HHHhCCCCcEEEEEe---CChHHHHHHHHHhhcCCC-------CCC-------CeEEEEccc
Q 021008          123 TKIAFIGSGPLPLTSIV-LAINHLTTTCFDNYD---IDPSANSKALSLVSSDPD-------LST-------RMFFHTTDI  184 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~-LA~~~~~ga~V~gvD---id~~ai~~Ar~~~~~~~g-------l~~-------ri~f~~gDa  184 (318)
                      .+|+.||+|.+|.+... |++.  .|..|+.+|   .+++.++.+.+   . .|       .+.       ++...+.|.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~--~G~~V~~~~~~~r~~~~~~~~~~---~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASR--DGVEVRVLTLFADEAERWTKALG---A-DELTVIVNEKDGTQTEVKSRPKVITKDP   76 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTS--TTEEEEEECCSTTHHHHHHHHHT---T-SCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred             ceEEEECCCHHHHHHHHHHHhC--CCCEEEEEeCCCCcHHHHHHHHh---h-ccceeeeecCCCccceeeccceEEeCCH
Confidence            48999999987665432 3221  388999999   87776665321   1 11       101       111122222


Q ss_pred             cccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          185 MNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       185 ~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      .+   ....+|+|+++-    +......+++.+...++|+.+|+.
T Consensus        77 ~~---a~~~aD~Vilav----~~~~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           77 EI---AISGADVVILTV----PAFAHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HH---HHTTCSEEEECS----CGGGHHHHHHHHTTTCCTTCEEEE
T ss_pred             HH---HhCCCCEEEEeC----chHHHHHHHHHHHhhCCCCcEEEE
Confidence            22   124699999875    345678899999999999887665

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.39  E-value=0.36  Score=44.74  Aligned_cols=102  Identities=16%  Similarity=0.181  Sum_probs=57.2

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHH-HHhhcC--CCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKAL-SLVSSD--PDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar-~~~~~~--~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      +||..||+|.+|.+..........+.+|+.+|++++.++.-. .+....  .+...++++. .|..    ++...|+|++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~~----~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS-NDYA----DTANSDIVII   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE-SCGG----GGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC-CCHH----HHCCCCEEEE
Confidence            489999999988775544433213789999999998766321 111110  0112233332 3432    2457999998


Q ss_pred             ccccC----CChh--------HHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AALVG----MDKD--------EKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalvg----m~~~--------~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +.-..    +...        -...+.+.+.+. .|++.+++-
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~viv~  117 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVV  117 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEEC
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEE
Confidence            76432    2111        113455555555 578876654

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.38  E-value=0.025  Score=52.90  Aligned_cols=91  Identities=20%  Similarity=0.236  Sum_probs=54.1

Q ss_pred             CCEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC---CCeEEE-----EccccccCcCCC
Q 021008          122 PTKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS---TRMFFH-----TTDIMNVSSALK  192 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~---~ri~f~-----~gDa~~l~~~l~  192 (318)
                      .+||+.||+|.+|.+.. .|++   .|..|+.+|.+ +..+..++     .|+.   ....+.     ..|..    +..
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~---~g~~V~~~~r~-~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~----~~~   69 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLAL---AGEAINVLARG-ATLQALQT-----AGLRLTEDGATHTLPVRATHDAA----ALG   69 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHH---TTCCEEEECCH-HHHHHHHH-----TCEEEEETTEEEEECCEEESCHH----HHC
T ss_pred             CCEEEEECcCHHHHHHHHHHHH---CCCEEEEEECh-HHHHHHHH-----CCCEEecCCCeEEEeeeEECCHH----HcC
Confidence            36899999998776643 3443   37899999996 33333322     1210   111111     11222    234


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      .+|+|+++-    +...-..+++.+...++|+..++.
T Consensus        70 ~~D~Vilav----k~~~~~~~~~~l~~~l~~~~~iv~  102 (335)
T 3ghy_A           70 EQDVVIVAV----KAPALESVAAGIAPLIGPGTCVVV  102 (335)
T ss_dssp             CCSEEEECC----CHHHHHHHHGGGSSSCCTTCEEEE
T ss_pred             CCCEEEEeC----CchhHHHHHHHHHhhCCCCCEEEE
Confidence            799999875    334555777777778888876653

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.29  E-value=0.2  Score=47.53  Aligned_cols=105  Identities=13%  Similarity=0.105  Sum_probs=62.3

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHH-HHHHhhcC-CCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSK-ALSLVSSD-PDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~-Ar~~~~~~-~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      +..||..||+|.+|.+..........-..|+.+|++++..+- +..+.... .....++.. .+|..    +....|+|+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~-t~d~~----~~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVS-GKDYS----VSAGSKLVV   94 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEE-ESSSC----SCSSCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEE-cCCHH----HhCCCCEEE
Confidence            558999999999887765443322112389999999975432 33332210 111223322 33432    356899999


Q ss_pred             ecccc----CCC--------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV----GMD--------KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv----gm~--------~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.+-+    ||+        .+-...+...+.+. .|.|.+++-+
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvt  138 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHP  138 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCC
Confidence            87644    332        23355667777776 8999877754

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.24  E-value=0.032  Score=50.84  Aligned_cols=102  Identities=13%  Similarity=0.098  Sum_probs=54.0

Q ss_pred             CCCEEEEEccCCChHHH-HHHHHh-CCC-C-cEEEEEeCChHHHHHHHH-H-hhcCCCCCCCeEEE-EccccccCcCCCC
Q 021008          121 FPTKIAFIGSGPLPLTS-IVLAIN-HLT-T-TCFDNYDIDPSANSKALS-L-VSSDPDLSTRMFFH-TTDIMNVSSALKD  193 (318)
Q Consensus       121 ~~~rVL~IGsGplp~ta-i~LA~~-~~~-g-a~V~gvDid~~ai~~Ar~-~-~~~~~gl~~ri~f~-~gDa~~l~~~l~~  193 (318)
                      .+.||++||+|.+|... ..|++. ..+ | ..|+.+|. ++..+..++ . +.. .+.... .+. .-.+.+.......
T Consensus         7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~   83 (317)
T 2qyt_A            7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRV-VTPSRD-FLARPTCVTDNPAEVGT   83 (317)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEE-ECSSCE-EEECCSEEESCHHHHCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEE-EeCCCC-eEEecceEecCccccCC
Confidence            44699999999877543 223331 001 6 79999999 654444333 1 100 000000 000 0001111112247


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +|+|+++--    ...-..+++.+...++||..++.
T Consensus        84 ~D~vil~vk----~~~~~~v~~~i~~~l~~~~~iv~  115 (317)
T 2qyt_A           84 VDYILFCTK----DYDMERGVAEIRPMIGQNTKILP  115 (317)
T ss_dssp             EEEEEECCS----SSCHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCEEEEecC----cccHHHHHHHHHhhcCCCCEEEE
Confidence            999998742    22346788888888988776654

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=94.23  E-value=0.055  Score=51.24  Aligned_cols=96  Identities=17%  Similarity=0.164  Sum_probs=58.7

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCC-------cEEEEEeCChH-----HHHHHHHHhhc---CCC--CCCCeEEEEccc
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTT-------TCFDNYDIDPS-----ANSKALSLVSS---DPD--LSTRMFFHTTDI  184 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~g-------a~V~gvDid~~-----ai~~Ar~~~~~---~~g--l~~ri~f~~gDa  184 (318)
                      +||.+||+|.+|.+. ..|++.   |       ..|+.+|.+++     ..+.-++.-..   ..|  +..++.+. .|.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~---G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~   97 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTN---AKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAH-SDL   97 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHH---HHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEE-SST
T ss_pred             CEEEEECcCHHHHHHHHHHHHc---CCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEE-CCH
Confidence            589999999877653 334442   5       68999999987     44443321110   011  22344432 232


Q ss_pred             cccCcCCCCccEEEeccccCCChhHHHHHHHHHHH----hccCCeEEEE
Q 021008          185 MNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAK----YMAPGALLML  229 (318)
Q Consensus       185 ~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r----~LkpGg~lv~  229 (318)
                      .+.   ....|+|+++-    +.....++++++..    .++||..++.
T Consensus        98 ~ea---~~~aDvVilav----~~~~~~~vl~~i~~~~~~~l~~~~ivvs  139 (375)
T 1yj8_A           98 ASV---INDADLLIFIV----PCQYLESVLASIKESESIKIASHAKAIS  139 (375)
T ss_dssp             HHH---HTTCSEEEECC----CHHHHHHHHHHHTC---CCCCTTCEEEE
T ss_pred             HHH---HcCCCEEEEcC----CHHHHHHHHHHHhhhhhccCCCCCEEEE
Confidence            221   23689999875    44567788888877    7888876654

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.23  E-value=0.045  Score=49.75  Aligned_cols=90  Identities=13%  Similarity=0.102  Sum_probs=57.0

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      +||.+||+|.+|.+. ..|++   .|.+|+++|++++..+...+.     |    +++ ..|..++   ....|+|+++-
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~~~~~-----g----~~~-~~~~~~~---~~~advvi~~v   65 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVR---AGFDVTVWNRNPAKCAPLVAL-----G----ARQ-ASSPAEV---CAACDITIAML   65 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHH---HTCCEEEECSSGGGGHHHHHH-----T----CEE-CSCHHHH---HHHCSEEEECC
T ss_pred             CeEEEEccCHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHHC-----C----Cee-cCCHHHH---HHcCCEEEEEc
Confidence            479999999998764 33444   278999999999877665432     2    121 2222222   12579998765


Q ss_pred             ccCCChhHHHHHH---HHHHHhccCCeEEEEEc
Q 021008          202 LVGMDKDEKIRVI---DHLAKYMAPGALLMLRS  231 (318)
Q Consensus       202 lvgm~~~~k~~vl---~~l~r~LkpGg~lv~r~  231 (318)
                      -   +...-..++   +.+.+.++||..++-.+
T Consensus        66 ~---~~~~~~~v~~~~~~l~~~l~~g~~vv~~s   95 (287)
T 3pdu_A           66 A---DPAAAREVCFGANGVLEGIGGGRGYIDMS   95 (287)
T ss_dssp             S---SHHHHHHHHHSTTCGGGTCCTTCEEEECS
T ss_pred             C---CHHHHHHHHcCchhhhhcccCCCEEEECC
Confidence            2   122334566   67778888988776544

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=94.17  E-value=0.08  Score=49.22  Aligned_cols=88  Identities=15%  Similarity=0.179  Sum_probs=57.1

Q ss_pred             CCEEEEEccCCChHHHH-HHHHhCCCC----cEEEEEeCChH--HHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCc
Q 021008          122 PTKIAFIGSGPLPLTSI-VLAINHLTT----TCFDNYDIDPS--ANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDY  194 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai-~LA~~~~~g----a~V~gvDid~~--ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~f  194 (318)
                      ..+|.+||+|.+|.+.. .|++   .|    ..|+.+|.+++  ..+..+    + .|    +++ ..|..+.   ....
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~---~G~~~~~~V~v~~r~~~~~~~~~l~----~-~G----~~~-~~~~~e~---~~~a   85 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTA---AGVLAAHKIMASSPDMDLATVSALR----K-MG----VKL-TPHNKET---VQHS   85 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHH---TTSSCGGGEEEECSCTTSHHHHHHH----H-HT----CEE-ESCHHHH---HHHC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH---CCCCCcceEEEECCCccHHHHHHHH----H-cC----CEE-eCChHHH---hccC
Confidence            46899999998776643 2333   25    68999999985  444433    2 23    232 2232222   2368


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      |+||++-    +.....+++.++...++||.+++-
T Consensus        86 DvVilav----~~~~~~~vl~~l~~~l~~~~ivvs  116 (322)
T 2izz_A           86 DVLFLAV----KPHIIPFILDEIGADIEDRHIVVS  116 (322)
T ss_dssp             SEEEECS----CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             CEEEEEe----CHHHHHHHHHHHHhhcCCCCEEEE
Confidence            9999875    345677888899888988876544

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=94.14  E-value=0.19  Score=46.51  Aligned_cols=94  Identities=15%  Similarity=0.148  Sum_probs=53.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEE-EeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDN-YDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~g-vDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ....||..||+|.+|...+...+...++.++++ +|.+++..+   ++.+. .|..   . ...|..++.. ....|+|+
T Consensus         6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~---~~a~~-~g~~---~-~~~~~~~~l~-~~~~D~V~   76 (346)
T 3cea_A            6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLE---WAKNE-LGVE---T-TYTNYKDMID-TENIDAIF   76 (346)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHH---HHHHT-TCCS---E-EESCHHHHHT-TSCCSEEE
T ss_pred             CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHH---HHHHH-hCCC---c-ccCCHHHHhc-CCCCCEEE
Confidence            455799999999988764443331237888765 599996543   33444 3431   1 2345555432 23699999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ++.-    ...-.++   +.+.|+.|-.+++
T Consensus        77 i~tp----~~~h~~~---~~~al~~G~~v~~  100 (346)
T 3cea_A           77 IVAP----TPFHPEM---TIYAMNAGLNVFC  100 (346)
T ss_dssp             ECSC----GGGHHHH---HHHHHHTTCEEEE
T ss_pred             EeCC----hHhHHHH---HHHHHHCCCEEEE
Confidence            7752    1222222   3345666665555

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=94.12  E-value=0.21  Score=50.11  Aligned_cols=124  Identities=5%  Similarity=0.031  Sum_probs=76.5

Q ss_pred             hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHH--HhCC---------CCcEEEEEeCChHHHHHHHHHhhcCCCCC
Q 021008          106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLA--INHL---------TTTCFDNYDIDPSANSKALSLVSSDPDLS  174 (318)
Q Consensus       106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA--~~~~---------~ga~V~gvDid~~ai~~Ar~~~~~~~gl~  174 (318)
                      ++++-...+.   +.++.+|+|-.||.+|+-.-.+-  +++.         ....+.|+|+++.+...|+-+..- -|. 
T Consensus       205 Vv~lmv~l~~---p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l-hg~-  279 (530)
T 3ufb_A          205 VVRFMVEVMD---PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL-HGL-  279 (530)
T ss_dssp             HHHHHHHHHC---CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH-HTC-
T ss_pred             HHHHHHHhhc---cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh-cCC-
Confidence            4454444432   46778999999998877543221  1111         124699999999999999866543 344 


Q ss_pred             CCeEEEEccccccCcC----CCCccEEEeccccCC--------------C-hhHHHHHHHHHHHhcc-------CCeEEE
Q 021008          175 TRMFFHTTDIMNVSSA----LKDYEVVFLAALVGM--------------D-KDEKIRVIDHLAKYMA-------PGALLM  228 (318)
Q Consensus       175 ~ri~f~~gDa~~l~~~----l~~fD~V~~aalvgm--------------~-~~~k~~vl~~l~r~Lk-------pGg~lv  228 (318)
                      +.-.+..+|....+..    ...||+|+.-=-.+.              . ...-..+++++.+.||       |||+++
T Consensus       280 ~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~a  359 (530)
T 3ufb_A          280 EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAA  359 (530)
T ss_dssp             SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEE
T ss_pred             ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEE
Confidence            3346778888754321    237999984211110              0 0112357889999997       699887


Q ss_pred             EEcCCC
Q 021008          229 LRSAHG  234 (318)
Q Consensus       229 ~r~~~g  234 (318)
                      +--++|
T Consensus       360 vVlP~g  365 (530)
T 3ufb_A          360 VVVPNG  365 (530)
T ss_dssp             EEEEHH
T ss_pred             EEecch
Confidence            765444

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.10  E-value=0.044  Score=50.66  Aligned_cols=93  Identities=12%  Similarity=0.077  Sum_probs=58.1

Q ss_pred             CCCCEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..-++|.+||+|.+|.+.. .|++   .|..|+++|++++..+...+     .|.    ++ ..+..++   ....|+|+
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~---~G~~V~~~dr~~~~~~~l~~-----~g~----~~-~~~~~~~---~~~aDvvi   82 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLK---NGFKVTVWNRTLSKCDELVE-----HGA----SV-CESPAEV---IKKCKYTI   82 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSSGGGGHHHHH-----TTC----EE-CSSHHHH---HHHCSEEE
T ss_pred             ccCCEEEEECccHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHH-----CCC----eE-cCCHHHH---HHhCCEEE
Confidence            3447999999998876643 3343   38899999999987766542     232    22 2222222   22579998


Q ss_pred             eccccCCChhHHHHHH---HHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVI---DHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl---~~l~r~LkpGg~lv~r~  231 (318)
                      ++--   +...-..++   +.+...+++|.+++--+
T Consensus        83 ~~vp---~~~~~~~v~~~~~~l~~~l~~g~~vv~~s  115 (310)
T 3doj_A           83 AMLS---DPCAALSVVFDKGGVLEQICEGKGYIDMS  115 (310)
T ss_dssp             ECCS---SHHHHHHHHHSTTCGGGGCCTTCEEEECS
T ss_pred             EEcC---CHHHHHHHHhCchhhhhccCCCCEEEECC
Confidence            7641   122334566   66778888988776544

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.05  E-value=0.038  Score=49.56  Aligned_cols=92  Identities=14%  Similarity=0.156  Sum_probs=55.8

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC-CCC--eEEEEccccccCcCCCCccEEE
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL-STR--MFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl-~~r--i~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      +||.+||+|.+|.... .|++   .|..|+.+|.+++..+   ++...  +. +..  ..+...+    +.....+|+|+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~---~g~~V~~~~r~~~~~~---~l~~~--~~~~~~~~~~~~~~~----~~~~~~~d~vi   68 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCK---QGHEVQGWLRVPQPYC---SVNLV--ETDGSIFNESLTAND----PDFLATSDLLL   68 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSSCCSEE---EEEEE--CTTSCEEEEEEEESC----HHHHHTCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHh---CCCCEEEEEcCcccee---eEEEE--cCCCceeeeeeeecC----ccccCCCCEEE
Confidence            4799999998776532 3333   4789999999985432   12111  11 111  1122211    11223699999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      ++-    +...-..+++.+...++||..++.-
T Consensus        69 ~~v----~~~~~~~v~~~l~~~l~~~~~vv~~   96 (291)
T 1ks9_A           69 VTL----KAWQVSDAVKSLASTLPVTTPILLI   96 (291)
T ss_dssp             ECS----CGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             EEe----cHHhHHHHHHHHHhhCCCCCEEEEe
Confidence            875    2334577888999999998876554

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.02  E-value=0.064  Score=49.72  Aligned_cols=95  Identities=17%  Similarity=0.157  Sum_probs=54.8

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHH-hhcCCCCCCCeEEE----EccccccCcCCCCccE
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSL-VSSDPDLSTRMFFH----TTDIMNVSSALKDYEV  196 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~-~~~~~gl~~ri~f~----~gDa~~l~~~l~~fD~  196 (318)
                      .||+.||+|.+|..-. .|++   .|..|+.++.++.  +..++. +.-........++.    ..|..++   ...+|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~---~g~~V~~~~r~~~--~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~---~~~~Dl   74 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAK---TGHCVSVVSRSDY--ETVKAKGIRIRSATLGDYTFRPAAVVRSAAEL---ETKPDC   74 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH---TTCEEEEECSTTH--HHHHHHCEEEEETTTCCEEECCSCEESCGGGC---SSCCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCChH--HHHHhCCcEEeecCCCcEEEeeeeeECCHHHc---CCCCCE
Confidence            6899999998776543 3443   4789999999872  333322 10000011223331    1222222   127999


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      |+++-=.    ..-..+++.+...++|+..++.
T Consensus        75 VilavK~----~~~~~~l~~l~~~l~~~t~Iv~  103 (320)
T 3i83_A           75 TLLCIKV----VEGADRVGLLRDAVAPDTGIVL  103 (320)
T ss_dssp             EEECCCC----CTTCCHHHHHTTSCCTTCEEEE
T ss_pred             EEEecCC----CChHHHHHHHHhhcCCCCEEEE
Confidence            9987421    1223578888999999886654

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=94.00  E-value=0.24  Score=46.42  Aligned_cols=108  Identities=18%  Similarity=0.221  Sum_probs=58.6

Q ss_pred             CCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+.||+.+| +|.+|.+............+|+.+|++++ ...+..+...  ....+++.+.+ -.++...+.+.|+|+
T Consensus         6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~~~~dL~~~--~~~~~v~~~~~-t~d~~~al~gaDvVi   81 (326)
T 1smk_A            6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PGVTADISHM--DTGAVVRGFLG-QQQLEAALTGMDLII   81 (326)
T ss_dssp             --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HHHHHHHHTS--CSSCEEEEEES-HHHHHHHHTTCSEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-HhHHHHhhcc--cccceEEEEeC-CCCHHHHcCCCCEEE
Confidence            3567999999 89888887544433211278999999987 3344444432  12224444333 112222345789999


Q ss_pred             eccccC----CChhH----HHHHHHHHHHh---ccCCeEEEEEc
Q 021008          199 LAALVG----MDKDE----KIRVIDHLAKY---MAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvg----m~~~~----k~~vl~~l~r~---LkpGg~lv~r~  231 (318)
                      +.+-++    ++..+    -..++.++.+.   ..|.+.+++-+
T Consensus        82 ~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S  125 (326)
T 1smk_A           82 VPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS  125 (326)
T ss_dssp             ECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             EcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence            877542    21111    11344444433   35778777743

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.00  E-value=0.099  Score=52.09  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=62.3

Q ss_pred             CCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          121 FPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       121 ~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -..+|.+||.|.+|.+. ..|++   .|.+|+++|++++.++...+.  . .+ +..+.. +.|..++...+...|+|++
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~---~G~~V~v~dr~~~~~~~l~~~--~-~~-~~gi~~-~~s~~e~v~~l~~aDvVil   80 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAAD---HGFTVCAYNRTQSKVDHFLAN--E-AK-GKSIIG-ATSIEDFISKLKRPRKVML   80 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSSHHHHHHHHT--T-TT-TSSEEC-CSSHHHHHHTSCSSCEEEE
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHcc--c-cc-CCCeEE-eCCHHHHHhcCCCCCEEEE
Confidence            45699999999988764 33444   378999999999877665431  1 11 122332 2333343333345899997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +--   +...-..+++++...|+||.+|+-
T Consensus        81 ~Vp---~~~~v~~vl~~l~~~l~~g~iIId  107 (497)
T 2p4q_A           81 LVK---AGAPVDALINQIVPLLEKGDIIID  107 (497)
T ss_dssp             CCC---SSHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             EcC---ChHHHHHHHHHHHHhCCCCCEEEE
Confidence            652   113456788999999999887654

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=94.00  E-value=0.12  Score=46.81  Aligned_cols=91  Identities=12%  Similarity=0.169  Sum_probs=54.9

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      ...||.+||+|.+|........+  .|.+|+.+|.+++..+...+     .|    +.+ ..+..++   ....|+|+++
T Consensus         3 ~~~~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~~~~~~~~~~-----~g----~~~-~~~~~~~---~~~~D~vi~~   67 (301)
T 3cky_A            3 KSIKIGFIGLGAMGKPMAINLLK--EGVTVYAFDLMEANVAAVVA-----QG----AQA-CENNQKV---AAASDIIFTS   67 (301)
T ss_dssp             -CCEEEEECCCTTHHHHHHHHHH--TTCEEEEECSSHHHHHHHHT-----TT----CEE-CSSHHHH---HHHCSEEEEC
T ss_pred             CCCEEEEECccHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHH-----CC----Cee-cCCHHHH---HhCCCEEEEE
Confidence            35799999999988764332222  37899999999976654332     12    221 2222222   2258999876


Q ss_pred             cccCCChhHHHHHHH---HHHHhccCCeEEEE
Q 021008          201 ALVGMDKDEKIRVID---HLAKYMAPGALLML  229 (318)
Q Consensus       201 alvgm~~~~k~~vl~---~l~r~LkpGg~lv~  229 (318)
                      .-   ....-..++.   ++...++||..++-
T Consensus        68 vp---~~~~~~~v~~~~~~l~~~l~~~~~vv~   96 (301)
T 3cky_A           68 LP---NAGIVETVMNGPGGVLSACKAGTVIVD   96 (301)
T ss_dssp             CS---SHHHHHHHHHSTTCHHHHSCTTCEEEE
T ss_pred             CC---CHHHHHHHHcCcchHhhcCCCCCEEEE
Confidence            51   1123345554   67778888886654

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=93.94  E-value=0.49  Score=45.36  Aligned_cols=67  Identities=12%  Similarity=-0.079  Sum_probs=49.5

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--------CCCC
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--------ALKD  193 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--------~l~~  193 (318)
                      .+|+++=||.+|++. -+.+.   |.+ |.++|+|+.+++.-+.++..       ..++++|+.++..        ....
T Consensus         3 ~~vidLFsG~GGlsl-G~~~a---G~~~v~avE~d~~a~~t~~~N~~~-------~~~~~~DI~~~~~~~~~~~~~~~~~   71 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSL-GAARA---GFDVKMAVEIDQHAINTHAINFPR-------SLHVQEDVSLLNAEIIKGFFKNDMP   71 (376)
T ss_dssp             CEEEEETCTTSHHHH-HHHHH---TCEEEEEECSCHHHHHHHHHHCTT-------SEEECCCGGGCCHHHHHHHHCSCCC
T ss_pred             CeEEEEccCcCHHHH-HHHHC---CCcEEEEEeCCHHHHHHHHHhCCC-------CceEecChhhcCHHHHHhhcccCCC
Confidence            589999999877774 44442   665 56999999999988877643       5678999988642        1247


Q ss_pred             ccEEEec
Q 021008          194 YEVVFLA  200 (318)
Q Consensus       194 fD~V~~a  200 (318)
                      +|+|+..
T Consensus        72 ~D~i~gg   78 (376)
T 3g7u_A           72 IDGIIGG   78 (376)
T ss_dssp             CCEEEEC
T ss_pred             eeEEEec
Confidence            9999854

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=93.93  E-value=0.054  Score=50.69  Aligned_cols=95  Identities=11%  Similarity=0.065  Sum_probs=56.7

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE-Eccccc-cC-cCCCCc
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH-TTDIMN-VS-SALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~-~gDa~~-l~-~~l~~f  194 (318)
                      ..++++||..|+ |++|..++.+|+.. .+++|++++ +++..+.++      .|..  ..+- ..|..+ +. ..-+.+
T Consensus       140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~-g~~~V~~~~-~~~~~~~~~------~ga~--~~~~~~~~~~~~~~~~~~~g~  209 (349)
T 4a27_A          140 LREGMSVLVHSAGGGVGQAVAQLCSTV-PNVTVFGTA-STFKHEAIK------DSVT--HLFDRNADYVQEVKRISAEGV  209 (349)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHTTS-TTCEEEEEE-CGGGHHHHG------GGSS--EEEETTSCHHHHHHHHCTTCE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHc-CCcEEEEeC-CHHHHHHHH------cCCc--EEEcCCccHHHHHHHhcCCCc
Confidence            478899999998 88999999999753 467999998 555545543      1221  1111 111111 10 011379


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+||-..  |-+      .++...+.|+|||++++-.
T Consensus       210 Dvv~d~~--g~~------~~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          210 DIVLDCL--CGD------NTGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             EEEEEEC--C-------------CTTEEEEEEEEEEC
T ss_pred             eEEEECC--Cch------hHHHHHHHhhcCCEEEEEC
Confidence            9998543  211      1356779999999998765

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.82  E-value=0.078  Score=47.81  Aligned_cols=93  Identities=10%  Similarity=0.066  Sum_probs=51.5

Q ss_pred             CCCEEEEEccCCChHHHH-HHHHhCCCCc-EEEEEeCCh-------------------HHHHHHHHHhhcCCCCCCCeEE
Q 021008          121 FPTKIAFIGSGPLPLTSI-VLAINHLTTT-CFDNYDIDP-------------------SANSKALSLVSSDPDLSTRMFF  179 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai-~LA~~~~~ga-~V~gvDid~-------------------~ai~~Ar~~~~~~~gl~~ri~f  179 (318)
                      ..++|+.||+|.+|.... .|++   .|. +|+-+|.|.                   .-.+.+.+.+.+ ....-+++.
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~---~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~-~np~~~v~~  105 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLAS---AGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTR-INPHIAITP  105 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHH---HTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHH-HCTTSEEEE
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHH---cCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHH-HCCCcEEEE
Confidence            357999999997666543 3443   375 899999996                   333444333333 222234555


Q ss_pred             EEccccc--cCcCCCCccEEEeccccCCChhHHHHHHHHHHHh
Q 021008          180 HTTDIMN--VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKY  220 (318)
Q Consensus       180 ~~gDa~~--l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~  220 (318)
                      +..+..+  +...+++||+|+.+. -  +.+.+..+.+.+.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~DvVi~~~-d--~~~~~~~l~~~~~~~  145 (249)
T 1jw9_B          106 VNALLDDAELAALIAEHDLVLDCT-D--NVAVRNQLNAGCFAA  145 (249)
T ss_dssp             ECSCCCHHHHHHHHHTSSEEEECC-S--SHHHHHHHHHHHHHH
T ss_pred             EeccCCHhHHHHHHhCCCEEEEeC-C--CHHHHHHHHHHHHHc
Confidence            5544431  212234799998654 1  334555444444443

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.71  E-value=0.56  Score=41.83  Aligned_cols=106  Identities=13%  Similarity=0.119  Sum_probs=68.7

Q ss_pred             CCCCEEEEEccCCChHHH---HHHHHhCCCCcEEEEEeCC------------hHHHHHHHHHhhcCCCCCCCeEEEEccc
Q 021008          120 RFPTKIAFIGSGPLPLTS---IVLAINHLTTTCFDNYDID------------PSANSKALSLVSSDPDLSTRMFFHTTDI  184 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~ta---i~LA~~~~~ga~V~gvDid------------~~ai~~Ar~~~~~~~gl~~ri~f~~gDa  184 (318)
                      -.+++||..|++ .|+-.   ..|++   .|++|+.+|++            .+..+........   .+.++.++.+|+
T Consensus         8 l~gk~vlVTGas-~gIG~~ia~~l~~---~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~   80 (287)
T 3pxx_A            8 VQDKVVLVTGGA-RGQGRSHAVKLAE---EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEK---TGRKAYTAEVDV   80 (287)
T ss_dssp             TTTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHH---TTSCEEEEECCT
T ss_pred             cCCCEEEEeCCC-ChHHHHHHHHHHH---CCCeEEEEcccccccccccchhhhHHHHHHHHHHHh---cCCceEEEEccC
Confidence            357899999986 34432   33443   49999999998            6666665555555   357899999999


Q ss_pred             cccC----------cCCCCccEEEecccc-C----CChhHHHH-----------HHHHHHHhccCCeEEEEEcC
Q 021008          185 MNVS----------SALKDYEVVFLAALV-G----MDKDEKIR-----------VIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       185 ~~l~----------~~l~~fD~V~~aalv-g----m~~~~k~~-----------vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .+..          ...+..|+++..|-+ .    ++.++..+           +.+.+.+.|+++|.++.-+.
T Consensus        81 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           81 RDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence            8732          112468988765433 1    23344443           34567778888888877663

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=93.68  E-value=0.027  Score=66.23  Aligned_cols=104  Identities=17%  Similarity=0.187  Sum_probs=0.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCC-----cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc-CcCCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-----TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV-SSALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-----a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l-~~~l~~  193 (318)
                      .+..|||+||.|.++.|...+..  +.+     ...|-.|+|+...+.|++.++.     -++..-.-|..+. ++....
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~--l~~~~~~~~~yt~td~s~~~~~~a~~~f~~-----~di~~~~~d~~~~~~~~~~~ 1311 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPAL--LNTQPVMDLDYTATDRNPQALEAAQAKLEQ-----LHVTQGQWDPANPAPGSLGK 1311 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHH--TTTSSSCEEEEEEECSSSSSTTTTTTTHHH-----HTEEEECCCSSCCCC-----
T ss_pred             CCCceEEEECCCccHHHHHHHHh--hcccCcccceEEEecCChHHHHHHHHHhhh-----cccccccccccccccCCCCc


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||+|+....++ ...+..+.+.++++.|||||.+++..
T Consensus      1312 ydlvia~~vl~-~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1312 ADLLVCNCALA-TLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             CCEEEEECC---------------------CCEEEEEE
T ss_pred             eeEEEEccccc-ccccHHHHHHHHHHhcCCCcEEEEEe

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=93.63  E-value=0.17  Score=50.81  Aligned_cols=100  Identities=14%  Similarity=0.152  Sum_probs=61.8

Q ss_pred             CCC-CEEEEEccCCChHHHHHHHHhC----CCCcEEE-EEeCChHHHHHHHHHhhcCCCCC--CCeEEEEccccccCcCC
Q 021008          120 RFP-TKIAFIGSGPLPLTSIVLAINH----LTTTCFD-NYDIDPSANSKALSLVSSDPDLS--TRMFFHTTDIMNVSSAL  191 (318)
Q Consensus       120 ~~~-~rVL~IGsGplp~tai~LA~~~----~~ga~V~-gvDid~~ai~~Ar~~~~~~~gl~--~ri~f~~gDa~~l~~~l  191 (318)
                      -.+ ++|.+||+|.+|.+-..-.+..    .+|..|+ +.+.++...+.|++     .|..  ++.   ..+..++   .
T Consensus        51 L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e-----~G~~v~d~t---a~s~aEA---a  119 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARA-----AGFTEESGT---LGDIWET---V  119 (525)
T ss_dssp             TTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHH-----TTCCTTTTC---EEEHHHH---H
T ss_pred             hcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHH-----CCCEEecCC---CCCHHHH---H
Confidence            356 8999999999887754444331    1266655 77766655565543     3432  111   1122222   2


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGAR  236 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r  236 (318)
                      ...|+|+++-    +...-.++++++...|+||.+|+  .++|..
T Consensus       120 ~~ADVVILaV----P~~~~~eVl~eI~p~LK~GaILs--~AaGf~  158 (525)
T 3fr7_A          120 SGSDLVLLLI----SDAAQADNYEKIFSHMKPNSILG--LSHGFL  158 (525)
T ss_dssp             HHCSEEEECS----CHHHHHHHHHHHHHHSCTTCEEE--ESSSHH
T ss_pred             hcCCEEEECC----ChHHHHHHHHHHHHhcCCCCeEE--EeCCCC
Confidence            3679999875    44445679999999999999853  456653

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=93.56  E-value=0.046  Score=52.25  Aligned_cols=96  Identities=14%  Similarity=0.091  Sum_probs=59.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|..||.|.+|......++.+  |.+|+++|.++...+.+.+.     |.    .+. .+..++   +...|+|++
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~~-----g~----~~~-~~l~el---l~~aDvV~l  226 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPF--GCNLLYHDRLQMAPELEKET-----GA----KFV-EDLNEM---LPKCDVIVI  226 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGG--CCEEEEECSSCCCHHHHHHH-----CC----EEC-SCHHHH---GGGCSEEEE
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHC--CCEEEEeCCCccCHHHHHhC-----CC----eEc-CCHHHH---HhcCCEEEE
Confidence            5789999999999888876666653  99999999987544444322     21    211 222232   347899997


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ..-.  +.+.+.-+-++..+.||||++|+ +.+.
T Consensus       227 ~~Pl--t~~t~~li~~~~l~~mk~gailI-N~aR  257 (351)
T 3jtm_A          227 NMPL--TEKTRGMFNKELIGKLKKGVLIV-NNAR  257 (351)
T ss_dssp             CSCC--CTTTTTCBSHHHHHHSCTTEEEE-ECSC
T ss_pred             CCCC--CHHHHHhhcHHHHhcCCCCCEEE-ECcC
Confidence            6522  22222222245568899988764 4433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.77
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.72
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.71
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.71
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.7
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.69
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.67
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.67
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.65
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.63
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.63
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.61
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.61
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.61
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.61
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.6
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.6
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.59
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.58
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.57
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.57
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.55
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.55
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.55
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.51
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.51
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.5
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.5
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.5
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.49
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.48
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.47
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.47
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.44
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.44
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.43
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.42
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.41
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.37
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.36
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.34
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.31
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.3
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.3
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.29
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.28
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.28
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.27
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.26
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.26
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.24
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.22
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.21
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.19
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.18
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.16
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.16
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.12
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.1
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.09
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.07
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.05
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.04
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.02
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.0
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.99
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.99
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.96
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.95
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.94
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.84
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.81
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.8
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.78
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.71
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.71
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.7
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.69
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.66
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.64
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.62
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.46
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.34
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.34
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.32
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.22
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.2
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.2
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.19
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.18
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	98.17
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.12
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	98.1
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	98.1
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.09
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	98.07
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.02
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	98.01
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.01
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.96
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.89
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.87
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.86
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.85
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.83
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.79
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.76
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.73
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.72
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.7
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.69
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.66
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.66
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.58
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.55
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.53
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.45
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.43
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.39
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.23
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.05
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.01
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.94
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.85
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.85
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.81
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.56
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.55
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.53
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.43
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.35
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.21
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.11
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.11
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.11
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.03
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.99
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	95.98
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.98
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.94
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.87
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.77
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.72
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.59
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	95.51
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.5
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.48
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.42
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.36
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.1
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.05
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.03
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.92
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	94.91
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.84
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.65
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	94.64
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.62
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	94.44
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.32
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	94.15
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.14
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.96
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	93.93
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.8
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	93.65
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.51
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.46
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	93.4
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.34
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	93.24
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.22
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.19
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.1
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.06
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	92.96
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	92.85
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	92.72
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.69
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	92.61
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	92.55
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.48
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	92.48
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	92.44
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.17
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	92.15
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	91.9
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	91.9
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	91.67
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.49
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.34
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	91.33
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	91.24
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	91.22
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	91.21
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.03
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	91.03
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	90.79
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.4
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	90.3
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	90.29
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.21
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.16
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.12
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	90.1
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	90.0
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.66
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	89.65
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	89.5
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	89.46
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	89.36
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	89.25
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	89.04
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	89.01
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	88.76
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.65
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	88.57
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.45
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	88.4
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	88.34
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	88.19
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	88.12
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.02
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.55
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	87.34
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	87.1
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	87.05
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	86.94
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	86.87
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	86.13
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	86.07
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	85.87
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	85.84
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	85.76
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	85.73
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	85.55
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	85.36
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	85.35
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	85.34
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	85.3
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	84.84
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	84.74
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.52
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	84.26
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	83.84
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.78
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	83.5
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	83.47
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	83.44
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	83.27
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	83.15
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	83.05
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	83.02
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	83.01
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	82.98
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	82.91
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	82.88
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	82.59
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	82.39
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	82.26
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	81.98
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	81.93
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	81.8
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	81.51
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	81.44
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	81.35
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	81.27
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	81.16
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	80.25
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	80.12

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.77  E-value=3e-18  Score=156.32  Aligned_cols=121  Identities=13%  Similarity=0.217  Sum_probs=98.7

Q ss_pred             HhhHHHHHHHhhcc-cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc
Q 021008          105 KLSQLEFNILTQHC-SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD  183 (318)
Q Consensus       105 ~L~~~E~~~l~~~~-~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD  183 (318)
                      +..+.-.+.+.... ..++.||||||||+ |..++.||+++  |++|+|||+|+.+++.|++.... .|+.++++|+++|
T Consensus        50 ~~~~~~~~~l~~~~~l~~~~~vLDiGcG~-G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~-~gl~~~v~~~~~d  125 (282)
T d2o57a1          50 RTDEWLASELAMTGVLQRQAKGLDLGAGY-GGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQ-AGLADNITVKYGS  125 (282)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTT-SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHH-HTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCCCC-cHHHhhhhccC--CcEEEEEeccchhhhhhhccccc-ccccccccccccc
Confidence            33333334443333 37889999999996 56667888764  89999999999999999999998 8999999999999


Q ss_pred             ccccCcCCCCccEEEec-cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          184 IMNVSSALKDYEVVFLA-ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       184 a~~l~~~l~~fD~V~~a-alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.++|++.++||+|+.. ++.++  +++.+++.+++++|||||++++.+
T Consensus       126 ~~~l~~~~~sfD~V~~~~~l~h~--~d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         126 FLEIPCEDNSYDFIWSQDAFLHS--PDKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             TTSCSSCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccchhhccchhhhc--cCHHHHHHHHHHhcCCCcEEEEEE
Confidence            99999888899999854 34344  477889999999999999998865

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.3e-17  Score=148.81  Aligned_cols=106  Identities=19%  Similarity=0.155  Sum_probs=90.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+++||||||||++ ..+..+|+++  |++|+|||+|+.+++.|++.++. .|++++++|+++|+.++. ..++||+|+
T Consensus        31 l~pg~~VLDiGCG~G-~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~-~gl~~~v~~~~~d~~~~~-~~~~fD~v~  105 (245)
T d1nkva_          31 MKPGTRILDLGSGSG-EMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEE-LGVSERVHFIHNDAAGYV-ANEKCDVAA  105 (245)
T ss_dssp             CCTTCEEEEETCTTC-HHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEESCCTTCC-CSSCEEEEE
T ss_pred             CCCCCEEEEEcCCCC-HHHHHHHHhc--CCEEEEEecccchhhHHHHHHHH-hhccccchhhhhHHhhcc-ccCceeEEE
Confidence            478899999999975 4566788763  79999999999999999999998 999999999999999984 456899988


Q ss_pred             ec-cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LA-ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~a-alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .. ++.++  .++.++++++++.|||||++++.+
T Consensus       106 ~~~~~~~~--~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         106 CVGATWIA--GGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             EESCGGGT--SSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             EEehhhcc--CCHHHHHHHHHHHcCcCcEEEEEe
Confidence            54 33333  578899999999999999999976

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=3.5e-17  Score=141.86  Aligned_cols=106  Identities=16%  Similarity=0.138  Sum_probs=90.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .+..||||||||+ |..++.+|+   .|++|+|+|+|+++++.|++.+.. .+  .++.++++|+.+++...++||+|+.
T Consensus        36 ~~~~~ILDiGcG~-G~~~~~la~---~~~~v~giD~S~~~i~~ak~~~~~-~~--~~~~~~~~d~~~l~~~~~~fD~I~~  108 (226)
T d1ve3a1          36 KKRGKVLDLACGV-GGFSFLLED---YGFEVVGVDISEDMIRKAREYAKS-RE--SNVEFIVGDARKLSFEDKTFDYVIF  108 (226)
T ss_dssp             CSCCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHH-TT--CCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCc-chhhhhHhh---hhcccccccccccchhhhhhhhcc-cc--ccccccccccccccccCcCceEEEE
Confidence            6778999999996 667788987   489999999999999999998877 33  5689999999999888889999886


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ...+ +++..+..++++++.++|||||++++...
T Consensus       109 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         109 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            5533 55667888999999999999999988753

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.71  E-value=2.2e-17  Score=144.66  Aligned_cols=105  Identities=9%  Similarity=0.086  Sum_probs=88.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+++||||||||+ |..++.++++   +.+|+|+|+|+++++.|++.+.. .|. .+++|+++|+.++++..++||+|+
T Consensus        13 l~~~~rVLDiGcG~-G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~-~~~-~~i~~~~~d~~~l~~~~~~fD~v~   86 (231)
T d1vl5a_          13 LKGNEEVLDVATGG-GHVANAFAPF---VKKVVAFDLTEDILKVARAFIEG-NGH-QQVEYVQGDAEQMPFTDERFHIVT   86 (231)
T ss_dssp             CCSCCEEEEETCTT-CHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHH-TTC-CSEEEEECCC-CCCSCTTCEEEEE
T ss_pred             CCCcCEEEEecccC-cHHHHHHHHh---CCEEEEEECCHHHHhhhhhcccc-ccc-cccccccccccccccccccccccc
Confidence            47889999999995 6666778863   78999999999999999999887 665 789999999999988778999998


Q ss_pred             ecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....+ ++  .++.+++++++++|||||++++.+
T Consensus        87 ~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          87 CRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccc--CCHHHHHHHHHHhcCCCcEEEEEe
Confidence            65433 43  578899999999999999998854

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.70  E-value=9.1e-17  Score=142.31  Aligned_cols=106  Identities=12%  Similarity=0.246  Sum_probs=89.4

Q ss_pred             ccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008          118 CSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       118 ~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ...++++|||||||+ |..++.|++   .|+.|+|||+|+++++.|++.+.. .+  .+++|+++|+.+++.+ +.||+|
T Consensus        38 ~~~~~~~iLDiGcGt-G~~~~~l~~---~~~~v~gvD~s~~mi~~a~~~~~~-~~--~~i~~~~~d~~~l~~~-~~fD~I  109 (251)
T d1wzna1          38 AKREVRRVLDLACGT-GIPTLELAE---RGYEVVGLDLHEEMLRVARRKAKE-RN--LKIEFLQGDVLEIAFK-NEFDAV  109 (251)
T ss_dssp             CSSCCCEEEEETCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHH-TT--CCCEEEESCGGGCCCC-SCEEEE
T ss_pred             cCCCCCEEEEeCCCC-Cccchhhcc---cceEEEEEeecccccccccccccc-cc--ccchheehhhhhcccc-cccchH
Confidence            346778999999996 677788887   388999999999999999999887 34  4799999999999765 489998


Q ss_pred             Eec--cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLA--ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~a--alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++.  ++..++.++..++|++++++|||||++++..
T Consensus       110 ~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            863  4445677888999999999999999998854

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.69  E-value=1.3e-16  Score=140.44  Aligned_cols=126  Identities=14%  Similarity=0.155  Sum_probs=99.8

Q ss_pred             cChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhC-CCCcEEEEEeCChHHHHHHHHHhhcCCCCCCC
Q 021008           98 PYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINH-LTTTCFDNYDIDPSANSKALSLVSSDPDLSTR  176 (318)
Q Consensus        98 pY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~-~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~r  176 (318)
                      |+|+...+++..-...   + ..++.+|||||||+ |..++.|++.. .|+++|+|||+|++|++.|++..+. .+...+
T Consensus        20 P~Y~~~~~~i~~~~~~---~-~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~-~~~~~~   93 (225)
T d1im8a_          20 PGYSNIITAIGMLAER---F-VTADSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEIP   93 (225)
T ss_dssp             TTHHHHHHHHHHHHHH---H-CCTTCEEEEESCTT-CHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT-SCCSSC
T ss_pred             CCHHHHHHHHHHHHHH---h-cCCCCEEEEeccch-hhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh-hcccch
Confidence            7888776655443222   2 37889999999996 56667788642 3799999999999999999999887 778889


Q ss_pred             eEEEEccccccCcCCCCccEEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          177 MFFHTTDIMNVSSALKDYEVVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       177 i~f~~gDa~~l~~~l~~fD~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.+..+|..+.+.  ..||+|+..... .++.+++.++++++++.|||||.+++.+
T Consensus        94 ~~~~~~d~~~~~~--~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_          94 VEILCNDIRHVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEEECSCTTTCCC--CSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhccchhhcccc--ccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            9999999988754  478877754433 4567899999999999999999999864

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=9.6e-17  Score=141.99  Aligned_cols=105  Identities=10%  Similarity=0.146  Sum_probs=89.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.||||||||+ |..+..+|++   +++|+|||+|+.+++.|++.... .|+ +++.|+++|+.++++..++||+|+
T Consensus        14 ~~~~~rILDiGcGt-G~~~~~la~~---~~~v~gvD~S~~~l~~A~~~~~~-~~~-~~~~~~~~d~~~~~~~~~~fD~v~   87 (234)
T d1xxla_          14 CRAEHRVLDIGAGA-GHTALAFSPY---VQECIGVDATKEMVEVASSFAQE-KGV-ENVRFQQGTAESLPFPDDSFDIIT   87 (234)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHH-HTC-CSEEEEECBTTBCCSCTTCEEEEE
T ss_pred             CCCCCEEEEeCCcC-cHHHHHHHHh---CCeEEEEeCChhhhhhhhhhhcc-ccc-ccccccccccccccccccccceee
Confidence            47999999999996 5666788874   68999999999999999999887 666 679999999999988888999999


Q ss_pred             ecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ....+ ++  ++..++++++.++|||||.+++.+
T Consensus        88 ~~~~l~~~--~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          88 CRYAAHHF--SDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeceeecc--cCHHHHHHHHHHeeCCCcEEEEEE
Confidence            65433 33  468899999999999999988853

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.67  E-value=6.6e-17  Score=136.63  Aligned_cols=108  Identities=10%  Similarity=0.062  Sum_probs=89.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC-----------CCCeEEEEcccccc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL-----------STRMFFHTTDIMNV  187 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl-----------~~ri~f~~gDa~~l  187 (318)
                      ..+++||||||||. |..++.||++   |++|||||+|+++++.|++..+. .+.           +..++|+++|..++
T Consensus        18 ~~~~~rvLd~GCG~-G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~l   92 (201)
T d1pjza_          18 VVPGARVLVPLCGK-SQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGE-QPHITSQGDFKVYAAPGIEIWCGDFFAL   92 (201)
T ss_dssp             CCTTCEEEETTTCC-SHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCS-CSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             CCCCCEEEEecCcC-CHHHHHHHHc---CCceEeecccHHHHHHHHHHhcc-ccchhhhhhhhhccccccceeccccccc
Confidence            47889999999995 7788899974   99999999999999999999876 332           45678999999998


Q ss_pred             CcCCC-CccEEEeccc-cCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          188 SSALK-DYEVVFLAAL-VGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 ~~~l~-~fD~V~~aal-vgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.... .||+|+.... .++..+++.++++++++.|||||.+++..
T Consensus        93 ~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          93 TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            65443 8999986543 35566788999999999999999887755

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.65  E-value=2.4e-16  Score=135.88  Aligned_cols=104  Identities=13%  Similarity=0.148  Sum_probs=90.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      +.++++|||||||. |..++.+|+   .+.+|+|+|+|+++++.|++++++ .|++++++++++|+.+.+.+...||.||
T Consensus        31 ~~~g~~VLDiGcGs-G~~s~~lA~---~~~~V~avD~~~~~l~~a~~n~~~-~gl~~~v~~~~gda~~~~~~~~~~D~v~  105 (186)
T d1l3ia_          31 PGKNDVAVDVGCGT-GGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQR-HGLGDNVTLMEGDAPEALCKIPDIDIAV  105 (186)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHT---TSSEEEEEESCHHHHHHHHHHHHH-TTCCTTEEEEESCHHHHHTTSCCEEEEE
T ss_pred             CCCCCEEEEEECCe-Ecccccccc---cceEEEEecCCHHHHHHHHHHHHH-cCCCcceEEEECchhhcccccCCcCEEE
Confidence            57899999999996 555677886   367999999999999999999999 9999999999999999877778999999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +....    ....++++.+.+.|||||++++..
T Consensus       106 ~~~~~----~~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_         106 VGGSG----GELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             ESCCT----TCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EeCcc----ccchHHHHHHHHHhCcCCEEEEEe
Confidence            77532    455789999999999999998754

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.6e-16  Score=135.98  Aligned_cols=132  Identities=8%  Similarity=0.078  Sum_probs=99.7

Q ss_pred             cCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHH
Q 021008           86 SFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALS  165 (318)
Q Consensus        86 ~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~  165 (318)
                      +.+.||+.=...|.+..|..      ..+   ...++.|||++|||. |..++.||+   .|.+|||||+|+++|+.|++
T Consensus        19 ~~~~~w~~~~~~~~l~~~~~------~~l---~~~~~~rvLd~GCG~-G~~a~~LA~---~G~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          19 NGKTAFHQEQGHQLLKKHLD------TFL---KGKSGLRVFFPLCGK-AVEMKWFAD---RGHSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             HTCCTTCCTTCCHHHHHHHH------HHH---TTCCSCEEEETTCTT-CTHHHHHHH---TTCEEEEECSCHHHHHHHHH
T ss_pred             cCCCCCccCCCCHHHHHHHH------Hhc---CCCCCCEEEEeCCCC-cHHHHHHHh---CCCcEEEEeCCHHHHHHHHH
Confidence            35667755455665533321      111   136788999999995 788899998   49999999999999999988


Q ss_pred             HhhcCC----------------CCCCCeEEEEccccccCcCC-CCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEE
Q 021008          166 LVSSDP----------------DLSTRMFFHTTDIMNVSSAL-KDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALL  227 (318)
Q Consensus       166 ~~~~~~----------------gl~~ri~f~~gDa~~l~~~l-~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~l  227 (318)
                      .... .                ..+.+++|.++|..+++... ..||+|+... +.+++.+++.++++++.+.|||||++
T Consensus        86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~  164 (229)
T d2bzga1          86 EQNL-SYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQY  164 (229)
T ss_dssp             HTTC-CEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             Hhhc-cccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceE
Confidence            7653 1                12468999999999986544 4899999654 44667789999999999999999987


Q ss_pred             EEEc
Q 021008          228 MLRS  231 (318)
Q Consensus       228 v~r~  231 (318)
                      ++..
T Consensus       165 ~l~~  168 (229)
T d2bzga1         165 LLCV  168 (229)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6544

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=4.5e-16  Score=136.44  Aligned_cols=98  Identities=13%  Similarity=0.121  Sum_probs=81.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||+ |..+..|++   .|++|+|||+|+.+++.|++....        .++.+|+.++++..++||+|+.
T Consensus        41 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~giD~s~~~l~~a~~~~~~--------~~~~~~~~~l~~~~~~fD~ii~  108 (246)
T d2avna1          41 KNPCRVLDLGGGT-GKWSLFLQE---RGFEVVLVDPSKEMLEVAREKGVK--------NVVEAKAEDLPFPSGAFEAVLA  108 (246)
T ss_dssp             CSCCEEEEETCTT-CHHHHHHHT---TTCEEEEEESCHHHHHHHHHHTCS--------CEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCC-chhcccccc---cceEEEEeeccccccccccccccc--------ccccccccccccccccccceee
Confidence            6788999999996 677778886   489999999999999999986433        3678999999887789999985


Q ss_pred             c-ccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 A-ALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 a-alv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      . ... ++  ++..++++++.+.|||||.+++..
T Consensus       109 ~~~~~~~~--~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         109 LGDVLSYV--ENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             CSSHHHHC--SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecchhhhh--hhHHHHHHHHHhhcCcCcEEEEEE
Confidence            3 332 33  467789999999999999998864

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=1.2e-15  Score=131.86  Aligned_cols=105  Identities=14%  Similarity=0.250  Sum_probs=89.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .+|.|||||||| .|..++.||++   |.+|+|+|+|+.+++.|++..+. .|+ +++++..+|+.+++. .++||+|+.
T Consensus        29 ~~~grvLDiGcG-~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~-~~~-~~~~~~~~d~~~~~~-~~~fD~I~~  101 (198)
T d2i6ga1          29 VAPGRTLDLGCG-NGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAA-EGL-DNLQTDLVDLNTLTF-DGEYDFILS  101 (198)
T ss_dssp             SCSCEEEEETCT-TSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH-TTC-TTEEEEECCTTTCCC-CCCEEEEEE
T ss_pred             CCCCcEEEECCC-CCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhh-ccc-cchhhhheecccccc-cccccEEEE
Confidence            466799999999 47788899974   89999999999999999999888 777 579999999998764 468999986


Q ss_pred             cc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .. +.+++.++..++++++++.|+|||++++..
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            44 336677888999999999999999988865

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=5.3e-15  Score=136.61  Aligned_cols=106  Identities=7%  Similarity=0.068  Sum_probs=91.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      +.++.|||||||| .|..++.+|+.+  |++||||++|++.++.|++.+++ .|+.+++++..+|..+++   +.||.|+
T Consensus        60 l~~G~~VLDiGCG-~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~-~g~~~~v~~~~~d~~~~~---~~fD~i~  132 (285)
T d1kpga_          60 LQPGMTLLDVGCG-WGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVAN-SENLRSKRVLLAGWEQFD---EPVDRIV  132 (285)
T ss_dssp             CCTTCEEEEETCT-TSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHT-CCCCSCEEEEESCGGGCC---CCCSEEE
T ss_pred             CCCCCEEEEecCc-chHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHh-hhhhhhhHHHHhhhhccc---cccccee
Confidence            5899999999999 577778899875  89999999999999999999998 899999999999998875   4799776


Q ss_pred             -eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 -LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 -~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       +.++.++....+..+++++.+.|||||++++-+
T Consensus       133 si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         133 SIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             EESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence             455555555677899999999999999998744

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.61  E-value=1.7e-15  Score=134.66  Aligned_cols=103  Identities=12%  Similarity=0.095  Sum_probs=84.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|||||||++- -++.||++   |.+|+|||+|++|++.|++.+.. .|  .+++|+++|+.+++. .+.||+|+.
T Consensus        36 ~~~~~vLDiGCG~G~-~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~-~~--~~v~~~~~d~~~~~~-~~~fD~i~~  107 (246)
T d1y8ca_          36 LVFDDYLDLACGTGN-LTENLCPK---FKNTWAVDLSQEMLSEAENKFRS-QG--LKPRLACQDISNLNI-NRKFDLITC  107 (246)
T ss_dssp             CCTTEEEEETCTTST-THHHHGGG---SSEEEEECSCHHHHHHHHHHHHH-TT--CCCEEECCCGGGCCC-SCCEEEEEE
T ss_pred             CCCCeEEEEeCcCCH-HHHHHHHh---CCccEeeccchhhhhhccccccc-cC--ccceeeccchhhhcc-cccccccce
Confidence            667899999999754 45678863   78999999999999999998877 44  479999999999854 358999885


Q ss_pred             --ccccCC-ChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 --AALVGM-DKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 --aalvgm-~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                        .++-.+ +.++..++++++++.|+|||.+++.
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence              233233 5678899999999999999999864

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.61  E-value=8.6e-16  Score=140.54  Aligned_cols=109  Identities=14%  Similarity=0.137  Sum_probs=89.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+|.||||||||+ |..++.+|+.+..+++|+|+|+|+.+++.|++.... .+  .+++|+++|+.+++.. ++||+|+
T Consensus        25 ~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~-~~--~~~~f~~~d~~~~~~~-~~fD~v~   99 (281)
T d2gh1a1          25 ITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-LP--YDSEFLEGDATEIELN-DKYDIAI   99 (281)
T ss_dssp             CCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS-SS--SEEEEEESCTTTCCCS-SCEEEEE
T ss_pred             cCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc-cc--cccccccccccccccc-CCceEEE
Confidence            37889999999996 666678887554478999999999999999999887 44  4799999999998754 4799999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ....++ ...++.++++++++.|||||.+++.+++
T Consensus       100 ~~~~l~-~~~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1         100 CHAFLL-HMTTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             EESCGG-GCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             Eehhhh-cCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            765442 2246778999999999999999987753

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-15  Score=134.55  Aligned_cols=107  Identities=12%  Similarity=0.172  Sum_probs=96.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc------CCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS------ALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~------~l~~  193 (318)
                      ..+++||+|||| .|+|++++|+...++++|+++|+|++..+.|+++++. .|++++++++.||+.+...      ...+
T Consensus        58 ~~~k~vLEiGt~-~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~-ag~~~~i~~~~Gda~e~l~~~~~~~~~~~  135 (219)
T d2avda1          58 IQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ-AEAEHKIDLRLKPALETLDELLAAGEAGT  135 (219)
T ss_dssp             TTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHH-TTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             cCCCeEEEEech-hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHh-cCccceEEEEEeehhhcchhhhhhcccCC
Confidence            789999999999 7999999998764589999999999999999999999 9999999999999976321      2348


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ||+||+++    ++..+...++.+.+.|+|||++++.+.
T Consensus       136 fD~ifiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         136 FDVAVVDA----DKENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             EEEEEECS----CSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccEEEEeC----CHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            99999998    778899999999999999999999995

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.60  E-value=1.8e-15  Score=135.70  Aligned_cols=107  Identities=15%  Similarity=0.196  Sum_probs=97.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-------CCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-------ALK  192 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-------~l~  192 (318)
                      ..|++||+||+| .|+|++++|+...++++|+++|+|++..+.|++++++ .|+.++|+++.||+.+...       ..+
T Consensus        58 ~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~-~g~~~~i~~~~g~a~~~L~~l~~~~~~~~  135 (227)
T d1susa1          58 INAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKK-AGVDHKIDFREGPALPVLDEMIKDEKNHG  135 (227)
T ss_dssp             HTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHH-TTCGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred             cCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHH-hccccceeeeehHHHHHHHHHHhccccCC
Confidence            689999999998 7999999998765589999999999999999999999 9999999999999986422       234


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .||+||+++    ++..+...++.+.+.|+|||++++++.
T Consensus       136 ~fD~iFiDa----~k~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         136 SYDFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             CBSEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             ceeEEEecc----chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence            799999998    778899999999999999999999984

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=7.2e-15  Score=135.11  Aligned_cols=106  Identities=8%  Similarity=0.037  Sum_probs=90.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.||||||||.++ .++.+|+++  |++|||||+|++.++.|++.+++ .|+..++.+...|..+++   +.||.|+
T Consensus        50 l~~g~~VLDiGCG~G~-~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~-~~l~~~~~~~~~d~~~~~---~~fD~i~  122 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGT-TMRRAVERF--DVNVIGLTLSKNQHARCEQVLAS-IDTNRSRQVLLQGWEDFA---EPVDRIV  122 (280)
T ss_dssp             CCTTCEEEEESCTTSH-HHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHT-SCCSSCEEEEESCGGGCC---CCCSEEE
T ss_pred             CCCCCEEEEecCCchH-HHHHHHHhC--ceeEEEecchHHHHHHHHHHHHh-hccccchhhhhhhhhhhc---cchhhhh
Confidence            5789999999999655 457788764  89999999999999999999998 999999999999987764   4899777


Q ss_pred             -eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 -LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 -~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       +..+.++..+.+..+++.+++.|||||++++..
T Consensus       123 si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         123 SIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             EESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence             445556666778999999999999999998854

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.9e-15  Score=131.57  Aligned_cols=107  Identities=9%  Similarity=0.140  Sum_probs=87.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||||||. |..+..++++.  +.+|+|||+|+++++.|++.+.. .+. .+++|+++|+.+++...+.||+|+.
T Consensus        59 ~~~~~vLDiGcG~-G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~-~~~-~~~~f~~~d~~~~~~~~~~fD~I~~  133 (222)
T d2ex4a1          59 TGTSCALDCGAGI-GRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGE-EGK-RVRNYFCCGLQDFTPEPDSYDVIWI  133 (222)
T ss_dssp             CCCSEEEEETCTT-THHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGG-GGG-GEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred             CCCCEEEEeccCC-CHhhHHHHHhc--CCEEEEeecCHHHhhcccccccc-ccc-ccccccccccccccccccccccccc
Confidence            5668999999996 54445555432  56899999999999999999887 554 5789999999999877779999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ +++.++..+++.++++.|||||.+++.+
T Consensus       134 ~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         134 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            5544 5565667889999999999999999876

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.57  E-value=7.8e-15  Score=131.87  Aligned_cols=106  Identities=13%  Similarity=0.224  Sum_probs=90.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ...+||||||||+ |..++.+++++ |+.+++++|+ |++++.|++.+.. .|+.++++|+.+|..+.  ...+||+|++
T Consensus        79 ~~~~~VLDvGcG~-G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~rv~~~~~D~~~~--~~~~~D~v~~  152 (253)
T d1tw3a2          79 TNVRHVLDVGGGK-GGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKD-EGLSDRVDVVEGDFFEP--LPRKADAIIL  152 (253)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHH-TTCTTTEEEEECCTTSC--CSSCEEEEEE
T ss_pred             ccCCEEEEeCCCC-CHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHH-hhcccchhhccccchhh--cccchhheee
Confidence            6678999999996 66777888876 9999999998 7799999999998 89999999999998763  2247999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.++..++|+++++.|||||+|++.+
T Consensus       153 ~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            6654 4566777899999999999999998866

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.57  E-value=1.2e-14  Score=130.20  Aligned_cols=109  Identities=12%  Similarity=0.131  Sum_probs=86.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC-CccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK-DYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~-~fD~V  197 (318)
                      ..++++|||||||.++.+ ..+++.  ...+|+|||+|+++++.|++.... .+...++.|+++|+...+...+ .||+|
T Consensus        22 ~~~~~~VLDlGCG~G~~~-~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~-~~~~~~v~f~~~D~~~~~~~~~~~fD~V   97 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDL-LKYERA--GIGEYYGVDIAEVSINDARVRARN-MKRRFKVFFRAQDSYGRHMDLGKEFDVI   97 (252)
T ss_dssp             CCTTCEEEEETCTTTTTH-HHHHHH--TCSEEEEEESCHHHHHHHHHHHHT-SCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             CCCcCEEEEecccCcHHH-HHHHHc--CCCeEEEecCCHHHHHHHHHHHHh-cCCCcceEEEEcchhhhcccccccceEE
Confidence            378899999999975554 567764  346899999999999999998887 6777889999999987665444 79999


Q ss_pred             Eecc-ccCC--ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAA-LVGM--DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aa-lvgm--~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +... +.++  +.++..+++.++.++|||||++++..
T Consensus        98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_          98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  134 (252)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence            8643 3232  34566789999999999999998754

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2.6e-14  Score=129.86  Aligned_cols=125  Identities=16%  Similarity=0.182  Sum_probs=91.5

Q ss_pred             HHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC
Q 021008          112 NILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL  191 (318)
Q Consensus       112 ~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l  191 (318)
                      ..+....+.++.+|||||||+ |..+..+++. .++++|+|||+|+.+++.|++..       .+++|+++|+.++++..
T Consensus        75 ~~l~~~~~~~~~~iLDiGcG~-G~~~~~l~~~-~~~~~~~giD~s~~~~~~a~~~~-------~~~~~~~~d~~~l~~~~  145 (268)
T d1p91a_          75 AQLRERLDDKATAVLDIGCGE-GYYTHAFADA-LPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASSHRLPFSD  145 (268)
T ss_dssp             HHHHHHSCTTCCEEEEETCTT-STTHHHHHHT-CTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTSCSBCT
T ss_pred             HHHHHhcCCCCCEEEEeCCCC-cHHHHHHHHH-CCCCEEEEecchHhhhhhhhccc-------ccccceeeehhhccCCC
Confidence            333334457889999999997 4555667765 48999999999999999998653       46899999999999988


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC-----CCcccccccCCCcc-----ccCCcEE
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA-----HGARAFLYPVVDPS-----DLLGFEV  253 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~-----~g~r~~lYP~v~~~-----~l~gf~~  253 (318)
                      ++||+|+......        .+++++|+|||||.+++..+     +.++..+|+.....     .+.+|+.
T Consensus       146 ~sfD~v~~~~~~~--------~~~e~~rvLkpgG~l~~~~p~~~~l~el~~~~~~~~~~~~~~~~~~~~f~~  209 (268)
T d1p91a_         146 TSMDAIIRIYAPC--------KAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTL  209 (268)
T ss_dssp             TCEEEEEEESCCC--------CHHHHHHHEEEEEEEEEEEECTTTTHHHHTTTCSSCCCCCCCCCCCTTEEE
T ss_pred             CCEEEEeecCCHH--------HHHHHHHHhCCCcEEEEEeeCCcchHHHHHHhhccccccccchhhccCCce
Confidence            8999998543211        15778999999999998763     22234556654321     2337765

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.6e-15  Score=130.63  Aligned_cols=107  Identities=7%  Similarity=0.065  Sum_probs=86.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEV  196 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~  196 (318)
                      ..+++|||+|||| .|.++..+|++  .+.+|+|||+|+.+++.|++.+..   ...++.++.+|+.++.  ...++||.
T Consensus        51 ~~~g~~VLdIGcG-~G~~a~~~a~~--~~~~v~~id~s~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~fD~  124 (229)
T d1zx0a1          51 SSKGGRVLEVGFG-MAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPR---QTHKVIPLKGLWEDVAPTLPDGHFDG  124 (229)
T ss_dssp             TTTCEEEEEECCT-TSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGG---CSSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             ccCCCeEEEeecc-chHHHHHHHHc--CCCeEEEeCCCHHHHHHHHHHhhh---cccccccccccccccccccccccccc
Confidence            3678999999999 58888899874  467999999999999999999887   4567888889887653  33458999


Q ss_pred             EEecccc----CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALV----GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalv----gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+++...    .....+..+++++++|+|||||+|++.+
T Consensus       125 i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         125 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             eeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            9876533    2234678899999999999999998855

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=3.5e-14  Score=131.38  Aligned_cols=106  Identities=8%  Similarity=0.014  Sum_probs=88.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      +.++.||||||||- |..++.+|+++  |++|+||++|++.++.|++.++. .|+..++++...|...   ..++||.|+
T Consensus        59 l~~G~~VLDiGCG~-G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~-~~l~~~v~~~~~d~~~---~~~~fD~i~  131 (291)
T d1kpia_          59 LEPGMTLLDIGCGW-GSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDE-VDSPRRKEVRIQGWEE---FDEPVDRIV  131 (291)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHH-SCCSSCEEEEECCGGG---CCCCCSEEE
T ss_pred             CCCCCEEEEecCcc-hHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHh-hccchhhhhhhhcccc---cccccceEe
Confidence            58999999999994 56678888875  89999999999999999999998 9999999999988654   335899887


Q ss_pred             -eccccCCCh-------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 -LAALVGMDK-------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 -~aalvgm~~-------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       +..+-+|..       +.+.++++.+.+.|||||++++..
T Consensus       132 sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         132 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             EESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             echhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence             455445531       457899999999999999998854

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.2e-14  Score=128.70  Aligned_cols=106  Identities=11%  Similarity=0.170  Sum_probs=89.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC------cCCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS------SALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~------~~l~~  193 (318)
                      .+|++||+|||| .|+|+++||+...++++|+++|+++++.+.|+++++. .|+.++|+++.||+.++.      ...+.
T Consensus        55 ~kpk~ILEiGt~-~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~-~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~  132 (214)
T d2cl5a1          55 YSPSLVLELGAY-CGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNF-AGLQDKVTILNGASQDLIPQLKKKYDVDT  132 (214)
T ss_dssp             HCCSEEEEECCT-TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHH-HTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred             hCCCEEEEEccC-chhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHH-cCCCccceeeeccccccccchhhcccccc
Confidence            688999999999 6999999998765689999999999999999999998 999999999999998752      23457


Q ss_pred             ccEEEeccccCCChhHHHH--HHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIR--VIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~--vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||+||+++    ++..+..  .+.+..++|||||++++++
T Consensus       133 ~D~ifiD~----~~~~~~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1         133 LDMVFLDH----WKDRYLPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             EEEEEECS----CGGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred             cceeeecc----cccccccHHHHHHHhCccCCCcEEEEeC
Confidence            99999997    3333333  4566678999999999887

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=2.5e-14  Score=126.25  Aligned_cols=103  Identities=14%  Similarity=0.110  Sum_probs=85.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+++|||+||||+ |+.+..||+...++++|+++|+++++++.|++.++. .++ +++.++++|+.+.....+.||+|+
T Consensus        73 l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~-~~~-~n~~~~~~d~~~~~~~~~~fD~I~  149 (213)
T d1dl5a1          73 LDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-LGI-ENVIFVCGDGYYGVPEFSPYDVIF  149 (213)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-TTC-CSEEEEESCGGGCCGGGCCEEEEE
T ss_pred             ccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhh-hcc-cccccccCchHHccccccchhhhh
Confidence            58999999999996 777788998776788999999999999999999988 666 788999999998766667899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.+.+..       +.+++.+.|||||+|++-.
T Consensus       150 ~~~~~~~-------~p~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         150 VTVGVDE-------VPETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             ECSBBSC-------CCHHHHHHEEEEEEEEEEB
T ss_pred             hhccHHH-------hHHHHHHhcCCCcEEEEEE
Confidence            8764421       1234678899999998743

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.50  E-value=9.6e-14  Score=125.27  Aligned_cols=105  Identities=10%  Similarity=0.100  Sum_probs=86.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+.||||||||.+..| ..|++++  ...|++||+|+++++.|++....    ..+++|+++|+.+++...+.||+||.
T Consensus        92 ~~~~~vLD~GcG~G~~t-~~ll~~~--~~~v~~vD~s~~~l~~a~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~I~~  164 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRIT-KNLLTKL--YATTDLLEPVKHMLEEAKRELAG----MPVGKFILASMETATLPPNTYDLIVI  164 (254)
T ss_dssp             CCCSEEEEETCTTTHHH-HHTHHHH--CSEEEEEESCHHHHHHHHHHTTT----SSEEEEEESCGGGCCCCSSCEEEEEE
T ss_pred             CCCCeEEEecccCChhh-HHHHhhc--CceEEEEcCCHHHHHhhhccccc----cccceeEEccccccccCCCccceEEe
Confidence            57789999999965455 4555443  45899999999999999988764    25689999999998877779999997


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ +++.++..++++++++.|+|||.+++.+
T Consensus       165 ~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         165 QWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            6544 5566777899999999999999999876

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.50  E-value=2.3e-14  Score=131.13  Aligned_cols=107  Identities=14%  Similarity=0.093  Sum_probs=90.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC-CCCCCCeEEEEccccccCcCCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD-PDLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-~gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ..+++||||+|||++ ..++.||+...|+++|+++|+++++++.|+++++.. .+..++++|+++|+.+.+.+.+.||.|
T Consensus        94 i~PG~~VLE~G~GsG-~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV  172 (264)
T d1i9ga_          94 IFPGARVLEAGAGSG-ALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRA  172 (264)
T ss_dssp             CCTTCEEEEECCTTS-HHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEE
T ss_pred             CCCCCEEEecCcCCc-HHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceE
Confidence            489999999999975 455688887778999999999999999999988761 245689999999999887777799999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      |++.      ++..++++++.+.|||||++++-.+
T Consensus       173 ~ldl------p~P~~~l~~~~~~LkpGG~lv~~~P  201 (264)
T d1i9ga_         173 VLDM------LAPWEVLDAVSRLLVAGGVLMVYVA  201 (264)
T ss_dssp             EEES------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             EEec------CCHHHHHHHHHhccCCCCEEEEEeC
Confidence            9864      3556899999999999999998663

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.50  E-value=8.5e-14  Score=122.45  Aligned_cols=109  Identities=11%  Similarity=0.080  Sum_probs=90.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~V  197 (318)
                      .....|||||||. |..++.+|+.+ |++.|+|||+++.++..|.+.+++ .|+ ++++|+.+|+.++.  ...+++|.|
T Consensus        28 ~~~PlvLeIGcG~-G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~-~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v  103 (204)
T d2fcaa1          28 NDNPIHIEVGTGK-GQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKD-SEA-QNVKLLNIDADTLTDVFEPGEVKRV  103 (204)
T ss_dssp             SCCCEEEEECCTT-SHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH-SCC-SSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred             CCCceEEEEEecC-cHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHH-Hhc-cCchhcccchhhhhcccCchhhhcc
Confidence            3445899999995 77778899875 999999999999999999999988 788 68999999998865  445689999


Q ss_pred             EeccccCCChhHH-------HHHHHHHHHhccCCeEEEEEcC
Q 021008          198 FLAALVGMDKDEK-------IRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       198 ~~aalvgm~~~~k-------~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++..-.++++...       ..++++++++|||||.|.+++.
T Consensus       104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD  145 (204)
T d2fcaa1         104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  145 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             ccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence            9876566544321       4799999999999999998763

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.49  E-value=1e-13  Score=125.28  Aligned_cols=106  Identities=12%  Similarity=0.191  Sum_probs=90.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .+.++|||||||. |..+..++++| |+.+++++|+ |++++.|++.++. .|+.+|++|+.+|..+- . ..+||+|++
T Consensus        80 ~~~~~vlDvG~G~-G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~-~~~~~ri~~~~~d~~~~-~-p~~~D~v~~  153 (256)
T d1qzza2          80 SAVRHVLDVGGGN-GGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFAD-AGLADRVTVAEGDFFKP-L-PVTADVVLL  153 (256)
T ss_dssp             TTCCEEEEETCTT-SHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHH-TTCTTTEEEEECCTTSC-C-SCCEEEEEE
T ss_pred             ccCCEEEEECCCC-CHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhh-cCCcceeeeeeeecccc-c-cccchhhhc
Confidence            5668999999996 66777888876 9999999998 8899999999988 89999999999998762 1 237999998


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.++..++|+++++.|||||+|++.+
T Consensus       154 ~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         154 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence            7655 5677788899999999999999998865

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=1.9e-13  Score=117.97  Aligned_cols=106  Identities=15%  Similarity=0.131  Sum_probs=85.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC-CCeEEEEccccccCcCCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS-TRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~-~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ..++++|||||||+ |..++.+|+.   +..|+++|+|+.+++.|+++++. .++. .+++++.+|..+. ...+.||+|
T Consensus        50 ~~~~~~VLDiGcG~-G~~~~~la~~---~~~v~~iD~s~~~i~~a~~n~~~-~~l~~~~i~~~~~d~~~~-~~~~~fD~I  123 (194)
T d1dusa_          50 VDKDDDILDLGCGY-GVIGIALADE---VKSTTMADINRRAIKLAKENIKL-NNLDNYDIRVVHSDLYEN-VKDRKYNKI  123 (194)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHH-TTCTTSCEEEEECSTTTT-CTTSCEEEE
T ss_pred             cCCCCeEEEEeecC-ChhHHHHHhh---ccccceeeeccccchhHHHHHHH-hCCccceEEEEEcchhhh-hccCCceEE
Confidence            46889999999996 5667788863   67999999999999999999887 6775 4799999999873 345689999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +...........-.++++++.+.|+|||.+++.
T Consensus       124 i~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         124 ITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             EECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            976533323344567999999999999987653

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.47  E-value=8.8e-14  Score=126.33  Aligned_cols=114  Identities=16%  Similarity=0.197  Sum_probs=89.4

Q ss_pred             HHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc
Q 021008          104 IKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD  183 (318)
Q Consensus       104 ~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD  183 (318)
                      +.-+++-...+.+. ..+++||||||||+ |.-++.+++   .|++|+|+|+|+.+++.|+++++. .|+  +++|+++|
T Consensus       104 H~TT~l~l~~l~~~-~~~g~~VLDiGcGs-G~l~i~aa~---~g~~V~gvDis~~av~~A~~na~~-n~~--~~~~~~~d  175 (254)
T d2nxca1         104 HETTRLALKALARH-LRPGDKVLDLGTGS-GVLAIAAEK---LGGKALGVDIDPMVLPQAEANAKR-NGV--RPRFLEGS  175 (254)
T ss_dssp             SHHHHHHHHHHHHH-CCTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHH-TTC--CCEEEESC
T ss_pred             cchhhHHHHHHHhh-cCccCEEEEcccch-hHHHHHHHh---cCCEEEEEECChHHHHHHHHHHHH-cCC--ceeEEecc
Confidence            33455555555543 37889999999996 566777776   489999999999999999999988 666  46789999


Q ss_pred             ccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          184 IMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       184 a~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +.+. ...++||+|+...    ......+++.++.++|||||+|++.
T Consensus       176 ~~~~-~~~~~fD~V~ani----~~~~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         176 LEAA-LPFGPFDLLVANL----YAELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             HHHH-GGGCCEEEEEEEC----CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccc-ccccccchhhhcc----ccccHHHHHHHHHHhcCCCcEEEEE
Confidence            8764 3345899998543    2356778999999999999999874

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.47  E-value=5.6e-14  Score=127.48  Aligned_cols=105  Identities=15%  Similarity=0.121  Sum_probs=88.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+++||||+|||++.+| +.||+...++++|+++|+++++++.|++++++ .+...+++++.+|+.+.. ....||.|+
T Consensus        83 i~pG~rVLEiG~GsG~lt-~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~-~~~~~nv~~~~~Di~~~~-~~~~fD~V~  159 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMS-SYILYALNGKGTLTVVERDEDNLKKAMDNLSE-FYDIGNVRTSRSDIADFI-SDQMYDAVI  159 (250)
T ss_dssp             CCTTCEEEEECCTTSHHH-HHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT-TSCCTTEEEECSCTTTCC-CSCCEEEEE
T ss_pred             CCCcCEEEEeeeeCcHHH-HHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-hcCCCceEEEEeeeeccc-ccceeeeee
Confidence            488999999999975444 67887656889999999999999999999988 677799999999999864 345899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++.      .+..++++++.+.|||||++++-.+
T Consensus       160 ld~------p~p~~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         160 ADI------PDPWNHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             ECC------SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             ecC------CchHHHHHHHHHhcCCCceEEEEeC
Confidence            764      3456789999999999999998653

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.3e-14  Score=125.28  Aligned_cols=103  Identities=19%  Similarity=0.117  Sum_probs=84.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC----CCCeEEEEccccccCcCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL----STRMFFHTTDIMNVSSALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl----~~ri~f~~gDa~~l~~~l~~f  194 (318)
                      ..++.+||+||||+ |+.+.+||+...++.+|++||+++++++.|++++++ .++    ..++.++++|+.+...+.+.|
T Consensus        74 l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~-~~~~~~~~~~~~~~~gD~~~~~~~~~~f  151 (224)
T d1i1na_          74 LHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK-DDPTLLSSGRVQLVVGDGRMGYAEEAPY  151 (224)
T ss_dssp             SCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-HCTHHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred             cCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccc-cCcccccccceEEEEeecccccchhhhh
Confidence            37889999999995 787788998655788999999999999999999876 444    268999999999877777799


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      |+|++.+.+..       +.+.+.+.|||||++++-
T Consensus       152 D~I~~~~~~~~-------ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         152 DAIHVGAAAPV-------VPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             EEEEECSBBSS-------CCHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhcchhh-------cCHHHHhhcCCCcEEEEE
Confidence            99998775421       223567899999999873

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=1.6e-13  Score=125.42  Aligned_cols=104  Identities=19%  Similarity=0.108  Sum_probs=88.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++++|||+|||++ ..++.||+...|+++|+++|+++++++.|++++++ .|+.+++.+..+|+.+- .+...||.||
T Consensus       101 i~pG~~VLDiG~GsG-~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~-~g~~~~v~~~~~d~~~~-~~~~~~D~V~  177 (266)
T d1o54a_         101 VKEGDRIIDTGVGSG-AMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK-WGLIERVTIKVRDISEG-FDEKDVDALF  177 (266)
T ss_dssp             CCTTCEEEEECCTTS-HHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH-TTCGGGEEEECCCGGGC-CSCCSEEEEE
T ss_pred             CCCCCEEEECCCCCC-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-hccccCcEEEecccccc-ccccceeeeE
Confidence            589999999999975 55567888766899999999999999999999999 89999999999998654 3445899998


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++.      ++..++++++.+.|||||++++-.
T Consensus       178 ~d~------p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         178 LDV------PDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             ECC------SCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             ecC------CCHHHHHHHHHhhcCCCCEEEEEe
Confidence            764      356779999999999999998754

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.43  E-value=3.2e-13  Score=118.67  Aligned_cols=99  Identities=14%  Similarity=0.189  Sum_probs=80.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+++|||||||+ |..+..+++   .|.+|+|||+|+++++.|++...      ++++|+.+|+.+++. .++||+|+.
T Consensus        19 ~~~~~VLDiGcG~-G~~~~~l~~---~g~~v~giD~s~~~i~~a~~~~~------~~~~~~~~~~~~~~~-~~~fD~I~~   87 (225)
T d2p7ia1          19 FRPGNLLELGSFK-GDFTSRLQE---HFNDITCVEASEEAISHAQGRLK------DGITYIHSRFEDAQL-PRRYDNIVL   87 (225)
T ss_dssp             CCSSCEEEESCTT-SHHHHHHTT---TCSCEEEEESCHHHHHHHHHHSC------SCEEEEESCGGGCCC-SSCEEEEEE
T ss_pred             CCCCcEEEEeCCC-cHHHHHHHH---cCCeEEEEeCcHHHhhhhhcccc------ccccccccccccccc-ccccccccc
Confidence            5688999999997 455567776   37899999999999999987643      469999999998764 368999986


Q ss_pred             cccc-CCChhHHHHHHHHHH-HhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLA-KYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~-r~LkpGg~lv~r~  231 (318)
                      ...+ ++  .+..+++.++. ++|+|||.+++..
T Consensus        88 ~~vleh~--~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          88 THVLEHI--DDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             ESCGGGC--SSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cceeEec--CCHHHHHHHHHHHhcCCCceEEEEe
Confidence            6544 43  57788999998 7899999998864

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.42  E-value=4.2e-13  Score=118.18  Aligned_cols=104  Identities=11%  Similarity=0.062  Sum_probs=82.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCC---cc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKD---YE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~---fD  195 (318)
                      ..++++|||||||+ |.++..+|+.. ++.+|+|||+++.+++.|++.++. .   .++.++.+|+.+.+.....   +|
T Consensus        54 lkpg~~VLDlGcG~-G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~-~---~ni~~i~~d~~~~~~~~~~~~~vd  127 (209)
T d1nt2a_          54 LRGDERVLYLGAAS-GTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRE-R---NNIIPLLFDASKPWKYSGIVEKVD  127 (209)
T ss_dssp             CCSSCEEEEETCTT-SHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHH-C---SSEEEECSCTTCGGGTTTTCCCEE
T ss_pred             CCCCCEEEEeCCcC-CHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhc-c---CCceEEEeeccCccccccccceEE
Confidence            47889999999997 56777888754 777999999999999999999887 2   5899999999886543333   44


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +||.+ +.  ...++..++.++.+.|||||.+++-.
T Consensus       128 ~v~~~-~~--~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         128 LIYQD-IA--QKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEC-CC--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEec-cc--ChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            55433 22  23577889999999999999997754

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=3.8e-13  Score=115.87  Aligned_cols=95  Identities=12%  Similarity=0.088  Sum_probs=75.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .+..+|||||||++ ..+..++       +++|||+|+.+++.|++         .+++|+++|+.+++...++||+|+.
T Consensus        35 ~~~~~vLDiGcG~G-~~~~~~~-------~~~giD~s~~~~~~a~~---------~~~~~~~~d~~~l~~~~~~fD~I~~   97 (208)
T d1vlma_          35 LPEGRGVEIGVGTG-RFAVPLK-------IKIGVEPSERMAEIARK---------RGVFVLKGTAENLPLKDESFDFALM   97 (208)
T ss_dssp             CCSSCEEEETCTTS-TTHHHHT-------CCEEEESCHHHHHHHHH---------TTCEEEECBTTBCCSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCCc-ccccccc-------eEEEEeCChhhcccccc---------ccccccccccccccccccccccccc
Confidence            45679999999974 4444442       46899999999999985         2479999999999887789999986


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ...+. ...++.+++++++++|+|||.+++...
T Consensus        98 ~~~l~-h~~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          98 VTTIC-FVDDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             ESCGG-GSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccc-cccccccchhhhhhcCCCCceEEEEec
Confidence            65442 224688999999999999999988764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.37  E-value=1.6e-12  Score=116.03  Aligned_cols=106  Identities=13%  Similarity=0.077  Sum_probs=84.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V  197 (318)
                      ..++.+||+||||+ |.++..+|+. .|+..|+|||+||.+++.+++++..    ..++.++.+|+..... ....||++
T Consensus        72 ikpG~~VLDlGcGs-G~~~~~la~~-~~~g~V~aVDiS~~~i~~a~~~a~~----~~ni~~i~~d~~~~~~~~~~~~~v~  145 (230)
T d1g8sa_          72 IKRDSKILYLGASA-GTTPSHVADI-ADKGIVYAIEYAPRIMRELLDACAE----RENIIPILGDANKPQEYANIVEKVD  145 (230)
T ss_dssp             CCTTCEEEEESCCS-SHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHTTT----CTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             CCCCCEEEEeCEEc-CHHHHHHHHh-CCCCEEEEEeCcHHHHHHHHHHHhh----hcccceEEEeeccCcccccccceeE
Confidence            47889999999995 7888899975 5889999999999999999998775    2578889999987543 22356765


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++...+. ...+...++.++.+.|||||.+++-.
T Consensus       146 ~i~~~~~-~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         146 VIYEDVA-QPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             EEEECCC-STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Eeecccc-chHHHHHHHHHHHHhcccCceEEEEe
Confidence            5444332 34678889999999999999987754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.36  E-value=2.7e-12  Score=112.65  Aligned_cols=108  Identities=14%  Similarity=0.092  Sum_probs=88.2

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CCCCccEEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--ALKDYEVVF  198 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l~~fD~V~  198 (318)
                      ....|||||||. |-.++.+|+.+ |+..|+|+|+++.++..|.+.+.+ .++ .+++|+.+|+.++..  ...++|.|+
T Consensus        31 ~~plvLdIGcG~-G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~-~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~  106 (204)
T d1yzha1          31 DNPIHVEVGSGK-GAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLE-VGV-PNIKLLWVDGSDLTDYFEDGEIDRLY  106 (204)
T ss_dssp             CCCEEEEESCTT-SHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH-HCC-SSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred             CCCeEEEEeccC-CHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhh-hcc-ccceeeecCHHHHhhhccCCceehhc
Confidence            445899999995 77778899886 999999999999999999988887 777 689999999988753  344899998


Q ss_pred             eccccCCChhH-------HHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDE-------KIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~-------k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +..-.++++..       ...+++.++++|||||.|.+.+.
T Consensus       107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD  147 (204)
T d1yzha1         107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  147 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             ccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence            77655554321       15799999999999999988763

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.9e-12  Score=121.26  Aligned_cols=107  Identities=11%  Similarity=0.068  Sum_probs=84.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc---------CCCCCCCeEEEEccccccCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS---------DPDLSTRMFFHTTDIMNVSS  189 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~---------~~gl~~ri~f~~gDa~~l~~  189 (318)
                      ..++++|||+|||+ |..++.||+...++++|+++|+++++++.|++++++         ..+..+++.|+.+|+.+..+
T Consensus        96 i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          96 INPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence            48999999999997 555578888767899999999999999999998874         12456899999999987654


Q ss_pred             CC--CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          190 AL--KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       190 ~l--~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .+  ..||.||++-      ++...++.++.+.|||||+|++-.+
T Consensus       175 ~~~~~~fD~V~LD~------p~P~~~l~~~~~~LKpGG~lv~~~P  213 (324)
T d2b25a1         175 DIKSLTFDAVALDM------LNPHVTLPVFYPHLKHGGVCAVYVV  213 (324)
T ss_dssp             ------EEEEEECS------SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             ccCCCCcceEeecC------cCHHHHHHHHHHhccCCCEEEEEeC
Confidence            43  3799999864      2335689999999999999998653

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=6.6e-12  Score=116.70  Aligned_cols=103  Identities=14%  Similarity=0.143  Sum_probs=83.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++++|||||||+ |.-++.+|+.   |+ +|+++|.++ ++..|++..++ .++..+++++.+|+.+++.....||+|+
T Consensus        37 ~~~~~VLDlGcGt-G~ls~~aa~~---Ga~~V~avd~s~-~~~~a~~~~~~-~~~~~~i~~i~~~~~~l~~~~~~~D~i~  110 (328)
T d1g6q1_          37 FKDKIVLDVGCGT-GILSMFAAKH---GAKHVIGVDMSS-IIEMAKELVEL-NGFSDKITLLRGKLEDVHLPFPKVDIII  110 (328)
T ss_dssp             HTTCEEEEETCTT-SHHHHHHHHT---CCSEEEEEESST-HHHHHHHHHHH-TTCTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred             CCcCEEEEeCCCC-CHHHHHHHHh---CCCEEEEEeCCH-HHHHHHHHHHH-hCccccceEEEeehhhccCcccceeEEE
Confidence            4789999999996 5666777763   54 899999997 66889999888 8999999999999999977667899998


Q ss_pred             ecccc--CCChhHHHHHHHHHHHhccCCeEEE
Q 021008          199 LAALV--GMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       199 ~aalv--gm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      ...+.  .........++..+.+.|||||+++
T Consensus       111 se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            64332  1133567788999999999999985

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=2.6e-12  Score=114.62  Aligned_cols=104  Identities=12%  Similarity=0.120  Sum_probs=83.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---cCCCCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---SALKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---~~l~~fD  195 (318)
                      +.++++||++|||+ |.++..||+...++.+|++||+++.+++.+++.++. .   ..+..+.+|+....   .....+|
T Consensus        71 i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-~---~~~~~i~~d~~~~~~~~~~~~~vD  145 (227)
T d1g8aa_          71 IKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-R---RNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-C---TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             cCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-c---CCceEEEEECCCcccccccccceE
Confidence            47899999999996 677778998766889999999999999999999876 2   45778888886532   2334788


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +||.+-.   ...+...++.++.+.|||||.+++.
T Consensus       146 ~i~~d~~---~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         146 VIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEcc---ccchHHHHHHHHHHhcccCCeEEEE
Confidence            8886532   2357788999999999999998874

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.4e-12  Score=115.21  Aligned_cols=110  Identities=14%  Similarity=0.063  Sum_probs=75.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCC----------------------
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTR----------------------  176 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~r----------------------  176 (318)
                      ..++++|||||||++.++. .+|+.  .+.+|+|+|+|+.+++.|++.++. .+..-.                      
T Consensus        49 ~~~g~~vLDlGcG~G~~~~-~~~~~--~~~~v~giD~S~~~i~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQV-LAACD--SFQDITLSDFTDRNREELEKWLKK-EPGAYDWTPAVKFACELEGNSGRWEEKE  124 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGG-TTGGG--TEEEEEEEESCHHHHHHHHHHHHT-CTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHH-HHhcc--ccCcEEEecCCHHHHHHHHHHHhh-ccccchhhhHHHHHHHhccccchHHHHH
Confidence            3677899999999876664 45553  244799999999999999999876 322111                      


Q ss_pred             ------e-EEEEc----cccccCcCCCCccEEEecccc---CCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          177 ------M-FFHTT----DIMNVSSALKDYEVVFLAALV---GMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       177 ------i-~f~~g----Da~~l~~~l~~fD~V~~aalv---gm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                            + .....    +....+...+.||+|+....+   +.+.++...+++++++.|||||.+++.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~  194 (257)
T d2a14a1         125 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  194 (257)
T ss_dssp             HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence                  0 11111    111223455689998854322   22346788999999999999999999773

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=2.6e-12  Score=116.95  Aligned_cols=107  Identities=15%  Similarity=0.216  Sum_probs=77.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC---CCeEEEEccccccC---cCCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS---TRMFFHTTDIMNVS---SALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~---~ri~f~~gDa~~l~---~~l~~  193 (318)
                      .+++||||||||+ |..++.||+   .|++|+|||+|+++++.|++.... .+..   .+..+..+|...+.   ....+
T Consensus        55 ~~~~~vLD~GcG~-G~~~~~la~---~g~~v~gvD~S~~ml~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (292)
T d1xvaa_          55 HGCHRVLDVACGT-GVDSIMLVE---EGFSVTSVDASDKMLKYALKERWN-RRKEPAFDKWVIEEANWLTLDKDVPAGDG  129 (292)
T ss_dssp             TTCCEEEESSCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHH-TTTSHHHHTCEEEECCGGGHHHHSCCTTC
T ss_pred             cCCCEEEEecCCC-cHHHHHHHH---cCCeeeeccCchHHHHHHHHHHHh-cccccccceeeeeeccccccccccCCCCC
Confidence            5678999999996 666678887   389999999999999999988765 3332   23445555554321   12247


Q ss_pred             ccEEEecc--ccCC-----ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAA--LVGM-----DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aa--lvgm-----~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||.|+...  +.++     +.++..++|++++++|||||+|++..
T Consensus       130 fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         130 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             EEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            99887532  3233     23577889999999999999999854

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.28  E-value=5.1e-12  Score=112.57  Aligned_cols=98  Identities=16%  Similarity=0.101  Sum_probs=78.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.|||+||||+ |+.+.+||+.   +.+|+++|+++++++.|+++...   . .+++++.+|+..-..+.+.||.|+
T Consensus        68 l~~g~~VLdIG~Gs-Gy~ta~La~l---~~~V~aiE~~~~~~~~A~~~~~~---~-~nv~~~~~d~~~g~~~~~pfD~Ii  139 (224)
T d1vbfa_          68 LHKGQKVLEIGTGI-GYYTALIAEI---VDKVVSVEINEKMYNYASKLLSY---Y-NNIKLILGDGTLGYEEEKPYDRVV  139 (224)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHTT---C-SSEEEEESCGGGCCGGGCCEEEEE
T ss_pred             hcccceEEEecCCC-CHHHHHHHHH---hcccccccccHHHHHHHHHHHhc---c-cccccccCchhhcchhhhhHHHHH
Confidence            58999999999995 6666678873   78999999999999999998765   2 689999999987544556899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.+-+.       .+.+.+.+.|||||+|++--
T Consensus       140 v~~a~~-------~ip~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         140 VWATAP-------TLLCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             ESSBBS-------SCCHHHHHTEEEEEEEEEEE
T ss_pred             hhcchh-------hhhHHHHHhcCCCCEEEEEE
Confidence            876442       12234568899999998844

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=6.4e-12  Score=116.30  Aligned_cols=104  Identities=13%  Similarity=0.126  Sum_probs=82.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++++|||||||. |.-++.+|+.   | .+|++||.++.+ ..|++.+++ .++.++++++++|+.+++.....||+|+
T Consensus        32 ~~~~~VLDiGcG~-G~ls~~aa~~---Ga~~V~avd~s~~~-~~a~~~~~~-n~~~~~v~~~~~~~~~~~~~~~~~D~iv  105 (316)
T d1oria_          32 FKDKVVLDVGSGT-GILCMFAAKA---GARKVIGIECSSIS-DYAVKIVKA-NKLDHVVTIIKGKVEEVELPVEKVDIII  105 (316)
T ss_dssp             HTTCEEEEETCTT-SHHHHHHHHT---TCSEEEEEECSTTH-HHHHHHHHH-TTCTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             CCcCEEEEEecCC-cHHHHHHHHh---CCCEEEEEcCcHHH-hhhhhHHHH-hCCccccceEeccHHHcccccceeEEEe
Confidence            4789999999996 6667778763   5 479999999865 677777777 7899999999999999987777999998


Q ss_pred             eccccCC--ChhHHHHHHHHHHHhccCCeEEEE
Q 021008          199 LAALVGM--DKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       199 ~aalvgm--~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ...+...  .......++..+.+.|||||.++-
T Consensus       106 s~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         106 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            6543211  234567899999999999999864

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.5e-11  Score=108.35  Aligned_cols=110  Identities=18%  Similarity=0.155  Sum_probs=76.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC-----------------------
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST-----------------------  175 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~-----------------------  175 (318)
                      ...+++||||||||+-++.+.+++ +  ..+|+|+|+|+.+++.+++..++..+.-+                       
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~-~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  128 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACS-H--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER  128 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGG-G--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcc-c--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence            467899999999996566544433 2  56899999999999999988765221111                       


Q ss_pred             -----CeEEEEccccc------cCcCCCCccEEEecccc---CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          176 -----RMFFHTTDIMN------VSSALKDYEVVFLAALV---GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       176 -----ri~f~~gDa~~------l~~~l~~fD~V~~aalv---gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                           ...+...|+..      .+...++||+|+....+   ..+.++..+++++++++|||||.|++..
T Consensus       129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~  198 (263)
T d2g72a1         129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  198 (263)
T ss_dssp             HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence                 01233445542      11223479999864422   2245678899999999999999999977

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.1e-12  Score=117.49  Aligned_cols=109  Identities=10%  Similarity=0.016  Sum_probs=84.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc------CCCC-CCCeEEEEccccccCcCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS------DPDL-STRMFFHTTDIMNVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~------~~gl-~~ri~f~~gDa~~l~~~l  191 (318)
                      ..++++|||||||. |..++.+|+.+ +...++|||+++++++.|++..+.      ..|. ..+++|++||+.++++..
T Consensus       149 l~~~~~vlD~GcG~-G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~  226 (328)
T d1nw3a_         149 MTDDDLFVDLGSGV-GQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE  226 (328)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHH
T ss_pred             CCCCCEEEEcCCCC-CHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccc
Confidence            57889999999995 66667788754 556899999999999999876553      0222 357999999999876543


Q ss_pred             C--CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 K--DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~--~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .  ..|+||+..+..  .++..+.+.++.+.|||||+++.-.
T Consensus       227 ~~~~advi~~~~~~f--~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         227 RIANTSVIFVNNFAF--GPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             HHHHCSEEEECCTTT--CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccCcceEEEEcceec--chHHHHHHHHHHHhCCCCcEEEEec
Confidence            3  357888766543  2577789999999999999998743

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.26  E-value=5.9e-12  Score=111.49  Aligned_cols=100  Identities=13%  Similarity=0.074  Sum_probs=81.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+||+||||. |+.+.+||+.  .|.+|++||++++.++.|++.+.+ .|. .++.|++||+.+-....+.||.|+
T Consensus        76 l~~g~~VLeIGsGs-GY~taila~l--~g~~V~~ie~~~~l~~~a~~~l~~-~g~-~nv~~~~gd~~~g~~~~~pfD~Ii  150 (215)
T d1jg1a_          76 LKPGMNILEVGTGS-GWNAALISEI--VKTDVYTIERIPELVEFAKRNLER-AGV-KNVHVILGDGSKGFPPKAPYDVII  150 (215)
T ss_dssp             CCTTCCEEEECCTT-SHHHHHHHHH--HCSCEEEEESCHHHHHHHHHHHHH-TTC-CSEEEEESCGGGCCGGGCCEEEEE
T ss_pred             cCccceEEEecCCC-ChhHHHHHHh--hCceeEEEeccHHHHHHHHHHHHH-cCC-ceeEEEECccccCCcccCcceeEE
Confidence            58899999999995 7877788874  478899999999999999999998 776 899999999998655667999999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +.+-+.   .....    +.+.|+|||++++-
T Consensus       151 v~~a~~---~ip~~----l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         151 VTAGAP---KIPEP----LIEQLKIGGKLIIP  175 (215)
T ss_dssp             ECSBBS---SCCHH----HHHTEEEEEEEEEE
T ss_pred             eecccc---cCCHH----HHHhcCCCCEEEEE
Confidence            876552   11222    45789999999874

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.24  E-value=9.6e-12  Score=116.01  Aligned_cols=108  Identities=15%  Similarity=0.054  Sum_probs=85.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc----CcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV----SSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l----~~~l~~fD  195 (318)
                      .++++||++|||+++++ +.+|+.  ...+|+++|+|+++++.|+++++. .|+..+++|+++|+.+.    ......||
T Consensus       144 ~~g~~VLDl~~g~G~~s-i~~a~~--ga~~V~~vD~s~~al~~a~~N~~~-ngl~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFA-IHAAIA--GADEVIGIDKSPRAIETAKENAKL-NGVEDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             CTTCEEEETTCTTTHHH-HHHHHT--TCSEEEEEESCHHHHHHHHHHHHH-TTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeeecccCcccchh-hhhhhc--CCcEEEeecCCHHHHHHHHHHHHH-cCCCccceeeechhhhhhHHHHhccCCCC
Confidence            67899999999976655 566653  234899999999999999999998 89989999999999863    22335899


Q ss_pred             EEEeccccCC-C-------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGM-D-------KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm-~-------~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+++.-... .       ...+.+++....+.|+|||+|++-+
T Consensus       220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9998753211 1       1245668888999999999998876

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.22  E-value=1.2e-11  Score=115.10  Aligned_cols=106  Identities=15%  Similarity=0.054  Sum_probs=84.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc----CcCCCCcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV----SSALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l----~~~l~~fD  195 (318)
                      .+++||||++||+++++ +.+|+   .+++|+++|+|+.++++|+++++. .|+ ++++|+++|+.+.    ......||
T Consensus       144 ~~g~rVLDl~~gtG~~s-~~~a~---g~~~V~~vD~s~~al~~a~~n~~~-ngl-~~~~~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFA-LHLAL---GFREVVAVDSSAEALRRAEENARL-NGL-GNVRVLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             CCEEEEEEETCTTTHHH-HHHHH---HEEEEEEEESCHHHHHHHHHHHHH-TTC-TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeeeccCCCCcHHH-HHHHh---cCCcEEeecchHHHHHHHHHHHHH-cCC-CCcceeeccHHHHhhhhHhhhcCCC
Confidence            57899999999987776 67776   378999999999999999999998 888 5799999999874    23335899


Q ss_pred             EEEecccc---CC-C----hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALV---GM-D----KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalv---gm-~----~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+++.-.   +- +    .....+++....+.|+|||.|++-+
T Consensus       218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s  261 (318)
T d1wxxa2         218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS  261 (318)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            99986421   00 0    2344578889999999999998865

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.2e-11  Score=110.14  Aligned_cols=104  Identities=14%  Similarity=0.100  Sum_probs=80.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .++++|||||||. |.-++.+|+.   |+ +|+++|.++.+.. |++..++ .+..++++++.+|+.+++.....||+|+
T Consensus        34 ~~~~~VLDiGcG~-G~lsl~aa~~---Ga~~V~aid~s~~~~~-a~~~~~~-~~~~~~i~~~~~~~~~l~~~~~~~D~Iv  107 (311)
T d2fyta1          34 FKDKVVLDVGCGT-GILSMFAAKA---GAKKVLGVDQSEILYQ-AMDIIRL-NKLEDTITLIKGKIEEVHLPVEKVDVII  107 (311)
T ss_dssp             TTTCEEEEETCTT-SHHHHHHHHT---TCSEEEEEESSTHHHH-HHHHHHH-TTCTTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred             CCcCEEEEECCCC-CHHHHHHHHc---CCCEEEEEeCHHHHHH-HHHHHHH-hCCCccceEEEeeHHHhcCccccceEEE
Confidence            5789999999995 6667778873   64 8999999998764 5556666 6888999999999999987777999998


Q ss_pred             eccccC--CChhHHHHHHHHHHHhccCCeEEEE
Q 021008          199 LAALVG--MDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       199 ~aalvg--m~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ...+..  ........++....+.|||||+++-
T Consensus       108 se~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         108 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             EeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            643321  1223456777778899999999874

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=3.3e-11  Score=109.33  Aligned_cols=101  Identities=11%  Similarity=0.059  Sum_probs=83.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|||+|||.++++ +.+|++  .+++|+++|+||.+++.++++++. .|+.++++++++|+.+++. .+.||.|++
T Consensus       106 ~~g~~VlD~~aG~G~~~-l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~-n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~  180 (260)
T d2frna1         106 KPDELVVDMFAGIGHLS-LPIAVY--GKAKVIAIEKDPYTFKFLVENIHL-NKVEDRMSAYNMDNRDFPG-ENIADRILM  180 (260)
T ss_dssp             CTTCEEEETTCTTTTTH-HHHHHH--TCCEEEEECCCHHHHHHHHHHHHH-TTCTTTEEEECSCTTTCCC-CSCEEEEEE
T ss_pred             CCccEEEECcceEcHHH-HHHHHh--CCcEEEEecCCHHHHHHHHHHHHH-hCCCceEEEEEcchHHhcc-CCCCCEEEE
Confidence            78999999999976555 677764  457999999999999999999998 8999999999999999864 357999886


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      .-.     .....++....+.++|||.+.+.
T Consensus       181 ~~p-----~~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         181 GYV-----VRTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             CCC-----SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             CCC-----CchHHHHHHHHhhcCCCCEEEEE
Confidence            532     23345778888999999998654

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.18  E-value=1.9e-11  Score=101.78  Aligned_cols=105  Identities=10%  Similarity=0.080  Sum_probs=82.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-cCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-SALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-~~l~~fD~V  197 (318)
                      ..+++|||+|||.+.++. -.+.+   |+ +|++||+|+++++.+++.++. .++.++++++++|+.+.. ...++||+|
T Consensus        13 ~~g~~vlDl~~GtG~~~i-ea~~r---ga~~v~~ve~~~~a~~~~~~n~~~-~~~~~~~~ii~~D~~~~l~~~~~~fDiI   87 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAI-EAVSR---GMSAAVLVEKNRKAQAIIQDNIIM-TKAENRFTLLKMEAERAIDCLTGRFDLV   87 (152)
T ss_dssp             CCSCEEEEETCTTCHHHH-HHHHT---TCCEEEEECCCHHHHHHHHHHHHT-TTCGGGEEEECSCHHHHHHHBCSCEEEE
T ss_pred             CCCCeEEEcCCccCHHHH-HHHHh---Ccceeeeehhchhhhhhhhhhhhh-cccccchhhhccccccccccccccccee
Confidence            478999999999866664 34443   54 899999999999999999998 899999999999998743 334589999


Q ss_pred             EeccccCCChhHHHHHHHHHHH--hccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAK--YMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r--~LkpGg~lv~r~  231 (318)
                      |++--  .......++++.+..  .|+|||.+++..
T Consensus        88 f~DPP--y~~~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          88 FLDPP--YAKETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             EECCS--SHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             Eechh--hccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence            98741  123555677777754  599999999865

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.3e-11  Score=105.80  Aligned_cols=107  Identities=11%  Similarity=0.166  Sum_probs=74.4

Q ss_pred             CCCEEEEEccCCChHHHHHHHHh---CCC--CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeE--EEEcccccc------
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAIN---HLT--TTCFDNYDIDPSANSKALSLVSSDPDLSTRMF--FHTTDIMNV------  187 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~---~~~--ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~--f~~gDa~~l------  187 (318)
                      +..||||||||++.++. .+++.   .++  +..++|||+|+.+++.|++.++....+ ..+.  +...++.+.      
T Consensus        40 ~~~~VLDiGcG~G~~~~-~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  117 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDL-QILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL-ENVKFAWHKETSSEYQSRMLE  117 (280)
T ss_dssp             SEEEEEEETCTTSHHHH-HHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC-TTEEEEEECSCHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHH-HHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc-ccccccchhhhhhhhcchhcc
Confidence            34589999999866554 34332   123  457899999999999999998762222 4444  455544321      


Q ss_pred             CcCCCCccEEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          188 SSALKDYEVVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 ~~~l~~fD~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +...+.||+|+....+ ++  ++..++++++++.|+|||.+++..
T Consensus       118 ~~~~~~fD~I~~~~~l~~~--~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         118 KKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             SSSCCCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCCceeEEEEccceecC--CCHHHHHHHHHhhCCCCCEEEEEE
Confidence            3345689999865433 44  467889999999999999887754

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.16  E-value=4.3e-11  Score=109.39  Aligned_cols=111  Identities=11%  Similarity=0.100  Sum_probs=85.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC--------CCCCCeEEEEccccccCcC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP--------DLSTRMFFHTTDIMNVSSA  190 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~--------gl~~ri~f~~gDa~~l~~~  190 (318)
                      ...|++||.||.|. |.++..+.+ | +..+|+.|||||++++.|++.+....        +...|++++.+|+.+....
T Consensus        70 ~~~p~~vLiiG~G~-G~~~~~~l~-~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~  146 (276)
T d1mjfa_          70 HPKPKRVLVIGGGD-GGTVREVLQ-H-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN  146 (276)
T ss_dssp             SSCCCEEEEEECTT-SHHHHHHTT-S-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             CCCCceEEEecCCc-hHHHHHHHH-h-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc
Confidence            37899999999994 666665554 4 56799999999999999999875311        2357999999999875444


Q ss_pred             CCCccEEEeccccCCChhH---HHHHHHHHHHhccCCeEEEEEcC
Q 021008          191 LKDYEVVFLAALVGMDKDE---KIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       191 l~~fD~V~~aalvgm~~~~---k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .++||+|+++..-+.....   ..++++.+.++|+|||++++..+
T Consensus       147 ~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~  191 (276)
T d1mjfa_         147 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  191 (276)
T ss_dssp             CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence            5689999998765432222   36799999999999999998763

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.12  E-value=2e-11  Score=108.45  Aligned_cols=104  Identities=14%  Similarity=0.114  Sum_probs=79.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhC-----CCCcEEEEEeCChHHHHHHHHHhhcCCCC----CCCeEEEEccccccCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINH-----LTTTCFDNYDIDPSANSKALSLVSSDPDL----STRMFFHTTDIMNVSS  189 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~-----~~ga~V~gvDid~~ai~~Ar~~~~~~~gl----~~ri~f~~gDa~~l~~  189 (318)
                      ..++.|||+|||| .|+.+.+||+..     .++.+|++||++++.++.|+++... .++    -.++.|+++|+.+...
T Consensus        78 l~~g~~VLeIGtG-sGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~-~~~~~~~~~nv~~~~~d~~~~~~  155 (223)
T d1r18a_          78 LKPGARILDVGSG-SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNT-DDRSMLDSGQLLIVEGDGRKGYP  155 (223)
T ss_dssp             CCTTCEEEEESCT-TSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHH-HHHHHHHHTSEEEEESCGGGCCG
T ss_pred             cCCCCeEEEecCC-CCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhh-cchhhcCccEEEEEecccccccc
Confidence            3688999999999 588877888642     1346999999999999999988654 221    2589999999998655


Q ss_pred             CCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          190 ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+.||.|++.+-+. .      +-+.+.+.|||||++++--
T Consensus       156 ~~~~fD~Iiv~~a~~-~------~p~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         156 PNAPYNAIHVGAAAP-D------TPTELINQLASGGRLIVPV  190 (223)
T ss_dssp             GGCSEEEEEECSCBS-S------CCHHHHHTEEEEEEEEEEE
T ss_pred             cccceeeEEEEeech-h------chHHHHHhcCCCcEEEEEE
Confidence            666899999877552 1      1123578999999998743

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=2.7e-10  Score=104.09  Aligned_cols=108  Identities=19%  Similarity=0.288  Sum_probs=84.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+.+|||+|||.+.+ ++.+|+.+ |++.|+++|+|+.|++.|++++.. .|+ ++++|+.+|..+-. ....||+|+.
T Consensus       107 ~~~~~vlDlGtGSG~I-~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~-~~~-~~v~~~~~d~~~~~-~~~~fDlIvs  181 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAI-ALALASER-PDCEIIAVDRMPDAVSLAQRNAQH-LAI-KNIHILQSDWFSAL-AGQQFAMIVS  181 (274)
T ss_dssp             SSCCEEEEETCTTSHH-HHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHH-HTC-CSEEEECCSTTGGG-TTCCEEEEEE
T ss_pred             ccccceeeeehhhhHH-HHHHHhhC-CcceeeeccchhHHHhHHHHHHHH-hCc-ccceeeeccccccc-CCCceeEEEe
Confidence            6778999999997544 56777764 999999999999999999999998 777 57999999998742 2348999874


Q ss_pred             c----------------------cccCCC--hhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 A----------------------ALVGMD--KDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 a----------------------alvgm~--~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .                      |+.+-+  .....+++.+..++|+|||.+++--+
T Consensus       182 NPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig  238 (274)
T d2b3ta1         182 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG  238 (274)
T ss_dssp             CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             cchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            2                      111100  13456799999999999999998643

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=1.1e-10  Score=107.87  Aligned_cols=113  Identities=10%  Similarity=0.038  Sum_probs=84.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC-C-CCCCeEEEEccccccCcCC-CCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP-D-LSTRMFFHTTDIMNVSSAL-KDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~-g-l~~ri~f~~gDa~~l~~~l-~~fD~  196 (318)
                      +.|+|||.||.|. |.++..+. +|.+..+|+.|||||++++.|++.+.... + -..|++++.+|+.+..... +.||+
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l-~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  165 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVL-KHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV  165 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHT-TSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCceEEEecCCc-hHHHHHHH-hcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence            7899999999995 55555555 45567899999999999999999875311 1 2479999999999754433 38999


Q ss_pred             EEeccccCCCh----hHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          197 VFLAALVGMDK----DEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       197 V~~aalvgm~~----~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      |+++..-+...    --..++++.+.++|+|||++++.....
T Consensus       166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence            99887543211    114689999999999999999987543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=2.7e-10  Score=109.48  Aligned_cols=113  Identities=9%  Similarity=0.098  Sum_probs=79.8

Q ss_pred             HhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC-------C-CCCeEE-EEccc
Q 021008          114 LTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD-------L-STRMFF-HTTDI  184 (318)
Q Consensus       114 l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g-------l-~~ri~f-~~gDa  184 (318)
                      +......++++|+|||||. |-.++.+|+.+ +.++|+|||+++.+++.|++..+. .+       . ...+.+ ..++.
T Consensus       209 l~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~~-g~~~v~GIDiS~~~i~~Ak~~~~e-~~~~~~~~g~~~~~~~~~~~~~f  285 (406)
T d1u2za_         209 YQQCQLKKGDTFMDLGSGV-GNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEE-LKKRCKLYGMRLNNVEFSLKKSF  285 (406)
T ss_dssp             HHHTTCCTTCEEEEESCTT-SHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHH-HHHHHHHTTBCCCCEEEEESSCS
T ss_pred             HHHhCCCCCCEEEeCCCCC-cHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHH-Hhhhhhhhccccccceeeeeech
Confidence            3333358899999999995 67777888764 456899999999999999988764 21       1 122333 33443


Q ss_pred             cccC---cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          185 MNVS---SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       185 ~~l~---~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+.+   ..+..+|+|++..+..  .++..+.+.++++.|||||++++-.
T Consensus       286 ~~~~~~d~~~~~adVV~inn~~f--~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         286 VDNNRVAELIPQCDVILVNNFLF--DEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             TTCHHHHHHGGGCSEEEECCTTC--CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             hhccccccccccceEEEEecccC--chHHHHHHHHHHHhcCCCcEEEEec
Confidence            3321   1233678999876543  3677889999999999999998754

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=1.4e-10  Score=107.86  Aligned_cols=111  Identities=17%  Similarity=0.136  Sum_probs=84.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC---CCCCCCeEEEEccccccCcC-CCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD---PDLSTRMFFHTTDIMNVSSA-LKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~---~gl~~ri~f~~gDa~~l~~~-l~~f  194 (318)
                      .+.|+|||.||.| .|.++..+.+ +.+..+|+.|||||++++.|++.+...   .--..|++++.+|+.+.... .+.|
T Consensus        75 ~~~pk~VLiiG~G-~G~~~~~ll~-~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y  152 (312)
T d1uira_          75 HPEPKRVLIVGGG-EGATLREVLK-HPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERY  152 (312)
T ss_dssp             SSCCCEEEEEECT-TSHHHHHHTT-STTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCE
T ss_pred             CCCcceEEEeCCC-chHHHHHHHh-cCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcc
Confidence            3789999999999 4666666654 557889999999999999999987530   11257999999999985333 3489


Q ss_pred             cEEEecccc--CCC-h---hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALV--GMD-K---DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalv--gm~-~---~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+++..-  +.+ .   --..++++.+.++|+|||++++..
T Consensus       153 DvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            999988642  111 1   113579999999999999999865

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=4.3e-10  Score=97.61  Aligned_cols=111  Identities=12%  Similarity=0.122  Sum_probs=89.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-----cCCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-----SALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-----~~l~~  193 (318)
                      +.++..++|++||++|.|...+. ++ |+++|+|+|+|++|++.|++....   .+.+++|+.++..++.     ...+.
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~-~~-~~~~vi~~D~d~~~l~~a~~~l~~---~~~r~~~~~~~f~~~~~~~~~~~~~~   95 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILE-HC-PGCRIIGIDVDSEVLRIAEEKLKE---FSDRVSLFKVSYREADFLLKTLGIEK   95 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHH-HC-TTCEEEEEESCHHHHHHHHHHTGG---GTTTEEEEECCGGGHHHHHHHTTCSC
T ss_pred             CCCCCEEEEecCCCcHHHHHHHh-cC-CCCeEEEeechHHHHHHHHHhhcc---ccccccchhHHHhhHHHHHHHcCCCC
Confidence            57889999999999989876554 44 899999999999999999999887   5689999999887643     23458


Q ss_pred             ccEEEeccccCC--------ChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          194 YEVVFLAALVGM--------DKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       194 fD~V~~aalvgm--------~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ||.|+++.-+..        ......+.+....+.|+|||++++-+.|.
T Consensus        96 vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          96 VDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             EEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             cceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            999998754411        12566788999999999999998877554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.02  E-value=1e-09  Score=101.97  Aligned_cols=107  Identities=8%  Similarity=0.150  Sum_probs=84.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCC-CCeEEEEccccccC----cCCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLS-TRMFFHTTDIMNVS----SALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~-~ri~f~~gDa~~l~----~~l~~  193 (318)
                      .+++|||++.||+++++ +.+|+   .|+ .|++||+|+.++++|+++++. -|++ ++++|+++|+.+..    ..-..
T Consensus       143 ~~g~~VLdlf~~~G~~s-l~aa~---~ga~~V~~vD~s~~a~~~a~~N~~~-n~l~~~~~~~i~~d~~~~l~~~~~~~~~  217 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFS-VAAAM---GGAMATTSVDLAKRSRALSLAHFEA-NHLDMANHQLVVMDVFDYFKYARRHHLT  217 (317)
T ss_dssp             TBTCEEEEETCTTTHHH-HHHHH---TTBSEEEEEESCTTHHHHHHHHHHH-TTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             hCCCceeecCCCCcHHH-HHHHh---CCCceEEEecCCHHHHHHHHHHHHH-hcccCcceEEEEccHHHHHHHHHhhcCC
Confidence            67899999999987777 55555   366 799999999999999999987 7774 68999999998642    22347


Q ss_pred             ccEEEecccc------CC-C-hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALV------GM-D-KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalv------gm-~-~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||+|+++---      +. . ..+..++++...+.|+|||.|++-+
T Consensus       218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  263 (317)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            9999987310      00 1 1356789999999999999998865

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4e-10  Score=103.51  Aligned_cols=113  Identities=13%  Similarity=0.124  Sum_probs=83.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCCCCCeEEEEccccccCcCC-CCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDLSTRMFFHTTDIMNVSSAL-KDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl~~ri~f~~gDa~~l~~~l-~~fD  195 (318)
                      .+.|+|||.||.|. |.++..+. +|.+..+|+.|||||++++.|++.+..  ..--..|++++.+|+....... ++||
T Consensus        76 ~~~pk~vLiiGgG~-G~~~~~~l-~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (285)
T d2o07a1          76 HPNPRKVLIIGGGD-GGVLREVV-KHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD  153 (285)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHT-TCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred             CcCcCeEEEeCCCc-hHHHHHHH-HcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence            37889999999995 55555555 455678999999999999999998742  0112579999999998754333 4899


Q ss_pred             EEEeccccCCC---hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          196 VVFLAALVGMD---KDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       196 ~V~~aalvgm~---~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      +|+++..-+..   .--..++++.+.++|+|||++++....
T Consensus       154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            99998754221   123447899999999999999998643

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.99  E-value=6.2e-10  Score=101.57  Aligned_cols=113  Identities=12%  Similarity=0.082  Sum_probs=85.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC--CCCCCCeEEEEccccccCcC-CCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD--PDLSTRMFFHTTDIMNVSSA-LKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~--~gl~~ri~f~~gDa~~l~~~-l~~fD~  196 (318)
                      ..|++||.||.|. |.++..+. +|.+..+|+.|||||++++.|++.+...  .--..|++++.+|+...... .+.||+
T Consensus        74 ~~p~~vLiiGgG~-G~~~~~~l-~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv  151 (274)
T d1iy9a_          74 PNPEHVLVVGGGD-GGVIREIL-KHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV  151 (274)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHT-TCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             CCcceEEecCCCC-cHHHHHHH-hcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence            7889999999995 55555555 4546689999999999999999987520  11257999999999874333 348999


Q ss_pred             EEeccccCC--Ch-hHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          197 VFLAALVGM--DK-DEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       197 V~~aalvgm--~~-~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      |+++..-+.  +. --..++++.+.++|+|||+++...+..
T Consensus       152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~  192 (274)
T d1iy9a_         152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP  192 (274)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence            998875422  11 125679999999999999999987543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.99  E-value=1.2e-09  Score=100.36  Aligned_cols=113  Identities=15%  Similarity=0.136  Sum_probs=86.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCCCCCeEEEEccccccCcC--CCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDLSTRMFFHTTDIMNVSSA--LKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl~~ri~f~~gDa~~l~~~--l~~f  194 (318)
                      .+.|+|||.||.|. |.++..+.+ |.+..+|+.||||+++++.|++.+..  ..-...|++++.+|+.+....  .+.|
T Consensus        78 ~~~pk~VLiiGgG~-G~~~r~~l~-~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~y  155 (290)
T d1xj5a_          78 IPNPKKVLVIGGGD-GGVLREVAR-HASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY  155 (290)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred             CCCCcceEEecCCc-hHHHHHHHh-cccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCc
Confidence            47889999999995 566655554 54567999999999999999998742  022368999999999874422  2479


Q ss_pred             cEEEeccccCCCh---hHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          195 EVVFLAALVGMDK---DEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       195 D~V~~aalvgm~~---~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      |+|++++.-+...   --..++++.+.+.|+|||++++....
T Consensus       156 DvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         156 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             cEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            9999987643211   22467999999999999999998753

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.96  E-value=7.8e-10  Score=102.64  Aligned_cols=107  Identities=16%  Similarity=0.113  Sum_probs=80.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC-CeEEEEccccccCc----CCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST-RMFFHTTDIMNVSS----ALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~-ri~f~~gDa~~l~~----~l~~f  194 (318)
                      .+++|||+++||+++++ +.+|+   .|++||+||.|+.++++|+++++. .|+.. +++|+++|+.+...    .-..|
T Consensus       131 ~~~~rVLdlf~~tG~~s-l~aa~---~GA~V~~VD~s~~al~~a~~N~~l-n~~~~~~~~~i~~D~~~~l~~~~~~~~~f  205 (309)
T d2igta1         131 DRPLKVLNLFGYTGVAS-LVAAA---AGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDAMKFIQREERRGSTY  205 (309)
T ss_dssp             SSCCEEEEETCTTCHHH-HHHHH---TTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred             cCCCeEEEecCCCcHHH-HHHHh---CCCeEEEEeChHHHHHHHHHhhhh-hcccCCcEEEEeCCHHHhHHHHhhcCCCC
Confidence            67899999999976555 56665   489999999999999999999987 67754 79999999987432    22479


Q ss_pred             cEEEecc--cc-C-----CC-hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAA--LV-G-----MD-KDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aa--lv-g-----m~-~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+++-  +. +     .. ...+..+++.+.++|+|||.+++-+
T Consensus       206 D~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         206 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             CEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            9999752  11 0     01 1344567778889999999655544

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.95  E-value=6.3e-10  Score=103.41  Aligned_cols=113  Identities=11%  Similarity=0.068  Sum_probs=82.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC--CCCCeEEEEccccccCcC-CCCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD--LSTRMFFHTTDIMNVSSA-LKDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g--l~~ri~f~~gDa~~l~~~-l~~fD  195 (318)
                      ...|+|||.||.|. |.++..+.+ |.+..+|+.||||+++++.|++.+....+  -..|++++.+|+.+.... ...||
T Consensus       104 ~~~pk~VLIiGgG~-G~~~rellk-~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yD  181 (312)
T d2b2ca1         104 HPDPKRVLIIGGGD-GGILREVLK-HESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFD  181 (312)
T ss_dssp             SSSCCEEEEESCTT-SHHHHHHTT-CTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred             CCCCCeEEEeCCCc-hHHHHHHHH-cCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCC
Confidence            37899999999995 566555654 54567999999999999999998764111  147999999999874433 34899


Q ss_pred             EEEeccccCCC---hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          196 VVFLAALVGMD---KDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       196 ~V~~aalvgm~---~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      +|+++..-+..   .--..++++.+.+.|+|||++++....
T Consensus       182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence            99988754221   123467899999999999999998743

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=6.1e-10  Score=94.43  Aligned_cols=105  Identities=16%  Similarity=0.124  Sum_probs=75.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc--cCcCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN--VSSALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~--l~~~l~~fD~V  197 (318)
                      ..+.+|||+|||++.++ +..++   .|++|++||+|+.+++.++++++. .|+..++.+..+|...  .......||+|
T Consensus        40 ~~g~~vLDl~~G~G~~~-i~a~~---~ga~vv~vD~~~~a~~~~~~N~~~-~~~~~~v~~~~~d~~~~~~~~~~~~fD~I  114 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVG-LEAAS---EGWEAVLVEKDPEAVRLLKENVRR-TGLGARVVALPVEVFLPEAKAQGERFTVA  114 (171)
T ss_dssp             TTCCEEEEETCSSCHHH-HHHHH---TTCEEEEECCCHHHHHHHHHHHHH-HTCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEeccccchhh-hhhhh---ccchhhhcccCHHHHhhhhHHHHh-hccccceeeeehhcccccccccCCcccee
Confidence            67899999999976555 44554   389999999999999999999998 8888887777776542  12233479999


Q ss_pred             EeccccCCChhHHHHHHHHHH--HhccCCeEEEEEcC
Q 021008          198 FLAALVGMDKDEKIRVIDHLA--KYMAPGALLMLRSA  232 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~--r~LkpGg~lv~r~~  232 (318)
                      |++---+.+.   .+.+.++.  ..|+|||++++...
T Consensus       115 f~DPPY~~~~---~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         115 FMAPPYAMDL---AALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EECCCTTSCT---THHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             EEccccccCH---HHHHHHHHHcCCcCCCeEEEEEec
Confidence            9874222221   22334333  46999999998653

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.84  E-value=1.6e-08  Score=90.38  Aligned_cols=98  Identities=11%  Similarity=0.154  Sum_probs=78.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..-++|+|||||. |.-++.++++| |+.+++.+|+ |+.+       +. .+..+|++++.+|..+-   ....|++++
T Consensus        80 ~~~~~vlDiGGG~-G~~~~~l~~~~-P~l~~~v~Dl-p~vi-------~~-~~~~~ri~~~~gd~~~~---~p~~D~~~l  145 (244)
T d1fp1d2          80 EGISTLVDVGGGS-GRNLELIISKY-PLIKGINFDL-PQVI-------EN-APPLSGIEHVGGDMFAS---VPQGDAMIL  145 (244)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHHHC-TTCEEEEEEC-HHHH-------TT-CCCCTTEEEEECCTTTC---CCCEEEEEE
T ss_pred             cCCcEEEEecCCC-cHHHHHHHHHC-CCCeEEEecc-hhhh-------hc-cCCCCCeEEecCCcccc---cccceEEEE
Confidence            5568999999996 55666788776 9999999998 4443       33 55679999999998752   336799887


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.++..++|+.+++.|+|||+|++.+
T Consensus       146 ~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         146 KAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             ESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            6644 6678889999999999999999998876

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.81  E-value=1.5e-08  Score=90.57  Aligned_cols=98  Identities=11%  Similarity=0.177  Sum_probs=78.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..-++|+|||+|. |..++.++++| |+.+++.+|. |+++       +. .+..+|++|+.+|..+-   ...+|++++
T Consensus        79 ~~~~~vvDvGGG~-G~~~~~l~~~~-P~l~~~v~Dl-p~vi-------~~-~~~~~rv~~~~gD~f~~---~p~aD~~~l  144 (244)
T d1fp2a2          79 DGLESIVDVGGGT-GTTAKIICETF-PKLKCIVFDR-PQVV-------EN-LSGSNNLTYVGGDMFTS---IPNADAVLL  144 (244)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHHHC-TTCEEEEEEC-HHHH-------TT-CCCBTTEEEEECCTTTC---CCCCSEEEE
T ss_pred             cCceEEEEecCCc-cHHHHHHHHhC-CCCeEEEecC-HHHH-------Hh-CcccCceEEEecCcccC---CCCCcEEEE
Confidence            4557999999995 66677788876 9999999999 4343       33 56779999999998762   347899988


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCC---eEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPG---ALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpG---g~lv~r~  231 (318)
                      ...+ .++.++..++|+++++.|+||   |++++.+
T Consensus       145 ~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e  180 (244)
T d1fp2a2         145 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  180 (244)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             EeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence            7655 567888899999999999998   6676655

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.80  E-value=3.2e-08  Score=85.69  Aligned_cols=73  Identities=11%  Similarity=0.103  Sum_probs=59.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+++|||+|||++.++ +.++.+  ....|+|||+|+.+++.|+++++.   .+.+.+++.+|+.++.   ..||+|+.
T Consensus        45 l~g~~vLDlg~GtG~l~-i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~---~~~~~~~~~~d~~~~~---~~fD~Vi~  115 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLS-YGALLL--GAKEVICVEVDKEAVDVLIENLGE---FKGKFKVFIGDVSEFN---SRVDIVIM  115 (201)
T ss_dssp             STTCEEEEETCTTCHHH-HHHHHT--TCSEEEEEESCHHHHHHHHHHTGG---GTTSEEEEESCGGGCC---CCCSEEEE
T ss_pred             CCCCEEEECcCcchHHH-HHHHHc--CCCEEEEEcCcHHHHHHHHHHHHH---cCCCceEEECchhhhC---CcCcEEEE
Confidence            57899999999987665 455552  235899999999999999999887   4467899999998763   37999997


Q ss_pred             cc
Q 021008          200 AA  201 (318)
Q Consensus       200 aa  201 (318)
                      .-
T Consensus       116 nP  117 (201)
T d1wy7a1         116 NP  117 (201)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.78  E-value=3.7e-09  Score=90.50  Aligned_cols=105  Identities=10%  Similarity=0.012  Sum_probs=81.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~f  194 (318)
                      ..+++|||++||.+.++.-.+.+    |+ .|+.||.|+++++.++++++. .+..++++++++|+.+..    .....|
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~sr----Ga~~v~~ve~~~~a~~~~~~N~~~-~~~~~~~~i~~~D~~~~l~~~~~~~~~f  114 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSR----GMDKSICIEKNFAALKVIKENIAI-TKEPEKFEVRKMDANRALEQFYEEKLQF  114 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT----TCSEEEEEESCHHHHHHHHHHHHH-HTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             cCCCEEEEcccccccccceeeec----chhHHHHHHHHHHHHHHHHHHhhh-hhcccccccccccchhhhhhhcccCCCc
Confidence            47899999999987666544443    66 699999999999999999998 788889999999998632    223479


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHH--hccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAK--YMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r--~LkpGg~lv~r~  231 (318)
                      |+||++---  ......++++.+.+  .|+|||.+++..
T Consensus       115 DlIflDPPY--~~~~~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         115 DLVLLDPPY--AKQEIVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             EEEEECCCG--GGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ceEEechhh--hhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence            999988511  12445677888765  599999998854

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=6e-08  Score=84.78  Aligned_cols=103  Identities=11%  Similarity=0.025  Sum_probs=87.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++.+|+||||| .|+..+.+|-. .|+.+|+.+|.+..-++.-+...+. +|+ ++++++++.+.++. ....||+|..
T Consensus        64 ~~~~~ilDiGsG-aG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~-L~L-~nv~v~~~R~E~~~-~~~~fD~V~s  138 (207)
T d1jsxa_          64 LQGERFIDVGTG-PGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHE-LKL-ENIEPVQSRVEEFP-SEPPFDGVIS  138 (207)
T ss_dssp             CCSSEEEEETCT-TTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHH-TTC-SSEEEEECCTTTSC-CCSCEEEEEC
T ss_pred             hcCCceeeeecc-CCceeeehhhh-cccceEEEEecchHHHHHHHHHHHH-cCC-cceeeeccchhhhc-cccccceehh
Confidence            356799999999 59999999975 5999999999999999999999999 888 58999999999874 3348999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      -|+.     +-..+++-+.+.+++||.+++--+
T Consensus       139 RA~~-----~~~~ll~~~~~~l~~~g~~~~~KG  166 (207)
T d1jsxa_         139 RAFA-----SLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             SCSS-----SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             hhhc-----CHHHHHHHHHHhcCCCcEEEEECC
Confidence            8863     456788888999999999877653

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2.2e-08  Score=85.37  Aligned_cols=104  Identities=13%  Similarity=0.098  Sum_probs=79.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V  197 (318)
                      ..+.+|||++||.+.++--.+.+    |+ .|+.||+|+++++.++++++. .+. .+++++.+|+.+..... ..||+|
T Consensus        42 ~~~~~vLDlfaGsG~~giealsr----Ga~~v~~VE~~~~a~~~~k~N~~~-~~~-~~~~ii~~d~~~~l~~~~~~fDlI  115 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSR----YAAGATLIEMDRAVSQQLIKNLAT-LKA-GNARVVNSNAMSFLAQKGTPHNIV  115 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHT----TCSEEEEECSCHHHHHHHHHHHHH-TTC-CSEEEECSCHHHHHSSCCCCEEEE
T ss_pred             cchhhhhhhhccccceeeeEEec----CcceeEEEEEeechhhHHHHHHhh-ccc-cceeeeeecccccccccccccCEE
Confidence            46789999999976555444443    55 799999999999999999987 666 57899999998754333 389999


Q ss_pred             EeccccCCChhHHHHHHHHHHH--hccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAK--YMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r--~LkpGg~lv~r~  231 (318)
                      |++---  ......+++..+.+  .|+|+|.+++..
T Consensus       116 f~DPPY--~~~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         116 FVDPPF--RRGLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             EECCSS--STTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             EEcCcc--ccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            998522  22345667777765  499999998854

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.70  E-value=5.4e-08  Score=88.38  Aligned_cols=106  Identities=17%  Similarity=0.227  Sum_probs=78.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-CCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-LKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-l~~fD~V~  198 (318)
                      .+..+|+++|||.+ .-++.+|+  .|+++|+++|+|++|++.|+++++. .|+..++.++.+|..+.... .+.||+|+
T Consensus       109 ~~~~~vld~g~GsG-~i~~~la~--~~~~~v~a~Dis~~Al~~A~~Na~~-~~~~~~~~i~~~~~~~~~~~~~~~fDlIV  184 (271)
T d1nv8a_         109 YGIKTVADIGTGSG-AIGVSVAK--FSDAIVFATDVSSKAVEIARKNAER-HGVSDRFFVRKGEFLEPFKEKFASIEMIL  184 (271)
T ss_dssp             HTCCEEEEESCTTS-HHHHHHHH--HSSCEEEEEESCHHHHHHHHHHHHH-TTCTTSEEEEESSTTGGGGGGTTTCCEEE
T ss_pred             ccccEEEEeeeeee-hhhhhhhh--cccceeeechhhhhHHHHHHHHHHH-cCCCceeEEeecccccccccccCcccEEE
Confidence            45679999999964 44555665  3899999999999999999999999 89999999999999875332 35899887


Q ss_pred             ec--------------------cccCCC--hhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LA--------------------ALVGMD--KDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~a--------------------alvgm~--~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ..                    ||.|-.  ..-..++   +.+.|+|||.+++--+
T Consensus       185 sNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Eig  237 (271)
T d1nv8a_         185 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEIG  237 (271)
T ss_dssp             ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEECC
T ss_pred             EcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEEC
Confidence            32                    111100  0122333   3577999999988654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.69  E-value=5.2e-08  Score=84.59  Aligned_cols=68  Identities=19%  Similarity=0.204  Sum_probs=54.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|||+|||++.+ ++.+++.  ...+|+|||+|+++++.|+++..       +++|+++|+.+++   +.||+|+.
T Consensus        47 l~Gk~VLDlGcGtG~l-~i~a~~~--ga~~V~~vDid~~a~~~ar~N~~-------~~~~~~~D~~~l~---~~fD~Vi~  113 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGIL-ACGSYLL--GAESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEIS---GKYDTWIM  113 (197)
T ss_dssp             SBTSEEEEETCTTCHH-HHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGCC---CCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHH-HHHHHHc--CCCcccccccCHHHHHHHHHccc-------cccEEEEehhhcC---CcceEEEe
Confidence            5789999999997544 4666652  23579999999999999999864       4789999998875   47999986


Q ss_pred             c
Q 021008          200 A  200 (318)
Q Consensus       200 a  200 (318)
                      .
T Consensus       114 N  114 (197)
T d1ne2a_         114 N  114 (197)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.66  E-value=8.9e-08  Score=84.96  Aligned_cols=98  Identities=8%  Similarity=0.104  Sum_probs=76.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ...++|+|||||. |.-++.++++| |+.+++++|+-+.        ++. .....|++++.+|..+-   +...|++++
T Consensus        80 ~~~~~vvDvGGG~-G~~~~~l~~~~-P~l~~~v~Dlp~v--------i~~-~~~~~r~~~~~~d~~~~---~P~ad~~~l  145 (243)
T d1kyza2          80 EGLKSLVDVGGGT-GAVINTIVSKY-PTIKGINFDLPHV--------IED-APSYPGVEHVGGDMFVS---IPKADAVFM  145 (243)
T ss_dssp             SSCSEEEEETCTT-SHHHHHHHHHC-TTSEEEEEECTTT--------TTT-CCCCTTEEEEECCTTTC---CCCCSCEEC
T ss_pred             cCCcEEEEecCCC-cHHHHHHHHHC-CCCeEEEcccHHh--------hhh-cccCCceEEeccccccc---CCCcceEEE
Confidence            4458999999995 67777888876 9999999999653        233 45668999999998652   224566666


Q ss_pred             cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...+ .++.++..++|+++++.|+|||++++-+
T Consensus       146 ~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         146 KWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             EEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            5544 5577889999999999999999988865

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.64  E-value=2.1e-07  Score=79.83  Aligned_cols=114  Identities=12%  Similarity=0.115  Sum_probs=79.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHH----Hh---CCCCcEEEEEeCChHHHHHHHH------------------HhhcCCCC-
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLA----IN---HLTTTCFDNYDIDPSANSKALS------------------LVSSDPDL-  173 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA----~~---~~~ga~V~gvDid~~ai~~Ar~------------------~~~~~~gl-  173 (318)
                      .++-||+.+|||+ |-.+..||    ..   .....+|+|.|||+.+++.|++                  .+.+ .+. 
T Consensus        23 ~~~lrIwsaGCst-GeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~-~~~~  100 (193)
T d1af7a2          23 HGEYRVWSAAAST-GEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMR-GTGP  100 (193)
T ss_dssp             CSCEEEEESCCTT-THHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEE-CCTT
T ss_pred             CCCeEEEEeCCCC-chhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceee-cCCC
Confidence            4567999999995 65543333    21   1124689999999999999973                  2322 111 


Q ss_pred             -----------CCCeEEEEccccccC-cCCCCccEEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          174 -----------STRMFFHTTDIMNVS-SALKDYEVVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       174 -----------~~ri~f~~gDa~~l~-~~l~~fD~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                                 ...+.|...+..+.. ...++||+|+.-.+. -++.+.+.++++.+++.|+|||.|++-.+..+
T Consensus       101 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~sE~l  175 (193)
T d1af7a2         101 HEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENF  175 (193)
T ss_dssp             SCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCCC
T ss_pred             ccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecCccc
Confidence                       123556666665432 234589999976633 55888999999999999999999998776543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=5.8e-08  Score=86.87  Aligned_cols=77  Identities=14%  Similarity=0.032  Sum_probs=61.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc------CCCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS------ALKD  193 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~------~l~~  193 (318)
                      ....+|||||||++-.+ +.||++. |+++|+|+|+|++|++.|+++++. .++.+|+.++.++..+...      ..+.
T Consensus        60 ~~~~~~LDiGtGsg~I~-~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~-n~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (250)
T d2h00a1          60 STLRRGIDIGTGASCIY-PLLGATL-NGWYFLATEVDDMCFNYAKKNVEQ-NNLSDLIKVVKVPQKTLLMDALKEESEII  136 (250)
T ss_dssp             CCCCEEEEESCTTTTHH-HHHHHHH-HCCEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred             cccceEEEeCCCchHHH-HHHHHhC-CCccccceecCHHHHHHHHHHHHH-hCCCcceeeeeeccHHhhhhhhhhcccCc
Confidence            45579999999976555 5566664 899999999999999999999999 8999999999876654211      2237


Q ss_pred             ccEEEe
Q 021008          194 YEVVFL  199 (318)
Q Consensus       194 fD~V~~  199 (318)
                      ||+|+.
T Consensus       137 fD~ivs  142 (250)
T d2h00a1         137 YDFCMC  142 (250)
T ss_dssp             BSEEEE
T ss_pred             eeEEEe
Confidence            999874

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.46  E-value=1.8e-07  Score=83.02  Aligned_cols=102  Identities=11%  Similarity=0.060  Sum_probs=72.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHH---hCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CC--C
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAI---NHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--AL--K  192 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~---~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l--~  192 (318)
                      .+|++||+||++ -|.|++++|.   .+.+.++|+|+|+++.....+       ....++++|++||..+...  ..  .
T Consensus        79 ~KPk~ILEIGv~-~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-------~~~~~~I~~i~gDs~~~~~~~~l~~~  150 (232)
T d2bm8a1          79 LRPRTIVELGVY-NGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-------ASDMENITLHQGDCSDLTTFEHLREM  150 (232)
T ss_dssp             HCCSEEEEECCT-TSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-------GGGCTTEEEEECCSSCSGGGGGGSSS
T ss_pred             hCCCEEEEECCC-CchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-------hccccceeeeecccccHHHHHHHHhc
Confidence            479999999998 5788888874   234689999999998543321       1234889999999876321  11  2


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .+|+||+++-.. ....... + .+.+.|+|||.+++.+.
T Consensus       151 ~~dlIfID~~H~-~~~v~~~-~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         151 AHPLIFIDNAHA-NTFNIMK-W-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             CSSEEEEESSCS-SHHHHHH-H-HHHHTCCTTCEEEECSC
T ss_pred             CCCEEEEcCCcc-hHHHHHH-H-HHhcccCcCCEEEEEcC
Confidence            689999987532 2223333 2 35689999999999884

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.34  E-value=1.3e-06  Score=72.11  Aligned_cols=97  Identities=20%  Similarity=0.164  Sum_probs=70.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-c-------cCcC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-N-------VSSA  190 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~-------l~~~  190 (318)
                      ..++++|+.+|+||+|+.++.+|+.  .|++|+++|.+++..+.|+++-..       ..+..-+.. +       +...
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~--~Ga~vi~v~~~~~r~~~a~~~ga~-------~~~~~~~~~~~~~~~~~~~~~~   94 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKA--YGAFVVCTARSPRRLEVAKNCGAD-------VTLVVDPAKEEESSIIERIRSA   94 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHTTCS-------EEEECCTTTSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhh--hcccccccchHHHHHHHHHHcCCc-------EEEeccccccccchhhhhhhcc
Confidence            5788999999999999999999986  489999999999999999875332       222211111 0       1111


Q ss_pred             -CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          191 -LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       191 -l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                       -..+|+|+-..  |     -...++...+.++|||++++-.
T Consensus        95 ~g~g~D~vid~~--g-----~~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          95 IGDLPNVTIDCS--G-----NEKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             SSSCCSEEEECS--C-----CHHHHHHHHHHSCTTCEEEECS
T ss_pred             cccCCceeeecC--C-----ChHHHHHHHHHHhcCCceEEEe
Confidence             12689998554  2     1346777789999999998866

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.34  E-value=1e-07  Score=80.77  Aligned_cols=101  Identities=18%  Similarity=0.254  Sum_probs=80.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .+|.+|+.||.|-.|+.++..|+++  |+.|+.+|.+++.++.-+....      .++++...+-..+...+.+.|+|+.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~------~~~~~~~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG------SRVELLYSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG------GGSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhc------ccceeehhhhhhHHHhhccCcEEEE
Confidence            5799999999999999999999985  9999999999999888776654      4567766666566555668999999


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      ++++.-.+.+|. +-+++.+.||||.+++=
T Consensus       102 aalipG~~aP~l-It~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1         102 AVLVPGRRAPIL-VPASLVEQMRTGSVIVD  130 (168)
T ss_dssp             CCCCTTSSCCCC-BCHHHHTTSCTTCEEEE
T ss_pred             eeecCCcccCee-ecHHHHhhcCCCcEEEE
Confidence            999843333433 66778899999998753

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.32  E-value=8.9e-07  Score=78.84  Aligned_cols=104  Identities=13%  Similarity=0.094  Sum_probs=86.5

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC---CCCccEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA---LKDYEVV  197 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~---l~~fD~V  197 (318)
                      .+.+|+||||| .|+..+.+|-. .|+.+|+-+|-+..-++.-+..++. +|+ .++.++++.+.++...   ...||+|
T Consensus        70 ~~~~ilDiGSG-aGfPGi~laI~-~p~~~v~Lves~~KK~~FL~~v~~~-L~L-~n~~i~~~R~E~~~~~~~~~~~~D~v  145 (239)
T d1xdza_          70 QVNTICDVGAG-AGFPSLPIKIC-FPHLHVTIVDSLNKRITFLEKLSEA-LQL-ENTTFCHDRAETFGQRKDVRESYDIV  145 (239)
T ss_dssp             GCCEEEEECSS-SCTTHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHH-HTC-SSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCeEEeecCC-CchHHHHHHHh-CCCccceeecchHHHHHHHHHHHHH-hCC-CCcEEEeehhhhccccccccccceEE
Confidence            56799999999 59999999964 5999999999999999999999998 888 6889999988876432   2379999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ..-|+-     .-..+++-..+.+++||.+++--+.
T Consensus       146 ~sRAva-----~l~~ll~~~~~~l~~~g~~i~~KG~  176 (239)
T d1xdza_         146 TARAVA-----RLSVLSELCLPLVKKNGLFVALKAA  176 (239)
T ss_dssp             EEECCS-----CHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred             EEhhhh-----CHHHHHHHHhhhcccCCEEEEECCC
Confidence            988853     4466888899999999998876543

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=7.8e-06  Score=75.23  Aligned_cols=120  Identities=12%  Similarity=0.085  Sum_probs=81.4

Q ss_pred             CcChhhHHHhhHHHHHHHhhcc-cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC
Q 021008           97 FPYYSNYIKLSQLEFNILTQHC-SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST  175 (318)
Q Consensus        97 fpY~~ny~~L~~~E~~~l~~~~-~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~  175 (318)
                      ..||+.-....+.-+..+..+. ..++.+|+|+-||. |.-++.||+   .+.+|+|||+++++++.|+++++. .|+ .
T Consensus       187 ~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~-G~fsl~La~---~~~~V~gvE~~~~ai~~A~~na~~-n~i-~  260 (358)
T d1uwva2         187 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM-GNFTLPLAT---QAASVVGVEGVPALVEKGQQNARL-NGL-Q  260 (358)
T ss_dssp             SSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTT-TTTHHHHHT---TSSEEEEEESCHHHHHHHHHHHHH-TTC-C
T ss_pred             chhhccchhhhhHHHHHHHHhhccCCCceEEEecccc-cccchhccc---cccEEEeccCcHHHHHHHHHhHHh-ccc-c
Confidence            3455533333333333333333 35778999999995 555578887   378999999999999999999987 777 6


Q ss_pred             CeEEEEccccccCc----CCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEE
Q 021008          176 RMFFHTTDIMNVSS----ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALL  227 (318)
Q Consensus       176 ri~f~~gDa~~l~~----~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~l  227 (318)
                      +++|+.+|+.+...    ....||+|+++=--   ..-. ++++.+.+ ++|.-++
T Consensus       261 n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR---~G~~-~~~~~l~~-~~~~~iv  311 (358)
T d1uwva2         261 NVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR---AGAA-GVMQQIIK-LEPIRIV  311 (358)
T ss_dssp             SEEEEECCTTSCCSSSGGGTTCCSEEEECCCT---TCCH-HHHHHHHH-HCCSEEE
T ss_pred             cceeeecchhhhhhhhhhhhccCceEEeCCCC---ccHH-HHHHHHHH-cCCCEEE
Confidence            89999999986432    22479999987421   1122 46777765 4665433

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.20  E-value=3e-06  Score=71.76  Aligned_cols=105  Identities=13%  Similarity=0.145  Sum_probs=80.2

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCC-CeEEEEccccccCc---CCCCcc
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLST-RMFFHTTDIMNVSS---ALKDYE  195 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~-ri~f~~gDa~~l~~---~l~~fD  195 (318)
                      .+.+|||+-||.+.+..-.+.+    || .|+.||.|..+++..+++++. .+... ...++..|+.+...   ....||
T Consensus        43 ~~~~vLDlFaGsG~~glEalSR----GA~~v~fVE~~~~a~~~ik~Ni~~-l~~~~~~~~~~~~d~~~~l~~~~~~~~fD  117 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSR----QAKKVTFLELDKTVANQLKKNLQT-LKCSSEQAEVINQSSLDFLKQPQNQPHFD  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT----TCSEEEEECSCHHHHHHHHHHHHH-TTCCTTTEEEECSCHHHHTTSCCSSCCEE
T ss_pred             ccceEeecccCccceeeeeeee----cceeeEEeecccchhhhHhhHHhh-hcccccccccccccccccccccccCCccc
Confidence            6679999999987777665653    65 899999999999999999998 77644 67888888775322   223699


Q ss_pred             EEEeccccCCChhHHHHHHHHHHH--hccCCeEEEEEcC
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAK--YMAPGALLMLRSA  232 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r--~LkpGg~lv~r~~  232 (318)
                      +||++==-  ......++++.+..  .|+++|.+++...
T Consensus       118 lIFlDPPY--~~~~~~~~l~~l~~~~~L~~~~liiiE~~  154 (183)
T d2ifta1         118 VVFLDPPF--HFNLAEQAISLLCENNWLKPNALIYVETE  154 (183)
T ss_dssp             EEEECCCS--SSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EEEechhH--hhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence            99988522  22456678887765  5999999998654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=6.1e-07  Score=74.57  Aligned_cols=101  Identities=11%  Similarity=0.114  Sum_probs=68.7

Q ss_pred             cccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-cCCCCcc
Q 021008          117 HCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-SALKDYE  195 (318)
Q Consensus       117 ~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-~~l~~fD  195 (318)
                      ....++++|+.+|+|++|..++.+|+.  .|++|+++|.+++..+.|+++=..       ..+...+-.+.. ...+.||
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~--~G~~vi~~~~~~~k~~~a~~lGa~-------~~i~~~~~~~~~~~~~~~~d   93 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKA--MGAETYVISRSSRKREDAMKMGAD-------HYIATLEEGDWGEKYFDTFD   93 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHHHTCS-------EEEEGGGTSCHHHHSCSCEE
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhh--ccccccccccchhHHHHhhccCCc-------EEeeccchHHHHHhhhcccc
Confidence            335889999999999999999999986  499999999999999998875321       122212211211 2234799


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+...-.+-+     ..+....+.++|||++++-.
T Consensus        94 ~vi~~~~~~~~-----~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          94 LIVVCASSLTD-----IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             EEEECCSCSTT-----CCTTTGGGGEEEEEEEEECC
T ss_pred             eEEEEecCCcc-----chHHHHHHHhhccceEEEec
Confidence            88853211101     11344578999999998865

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=7.6e-06  Score=74.35  Aligned_cols=82  Identities=15%  Similarity=0.109  Sum_probs=67.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC---CCcc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL---KDYE  195 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l---~~fD  195 (318)
                      +.++.+|||+.+||+|-|+ .+|.....+..|+++|+++..++..++++++ .|. .++.+...|..++....   ..||
T Consensus        92 ~~~g~~vLD~cAapGgKt~-~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r-~g~-~~~~~~~~d~~~~~~~~~~~~~fD  168 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTS-HLAALLKNQGKIFAFDLDAKRLASMATLLAR-AGV-SCCELAEEDFLAVSPSDPRYHEVH  168 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHH-HHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-TTC-CSEEEEECCGGGSCTTCGGGTTEE
T ss_pred             CCccceEEecccchhhHHH-HHHHHhcCCceEeeecCCHHHHHHHHHHHHh-cCc-cceeeeehhhhhhcccccccceee
Confidence            4788999999999987776 4565444678999999999999999999999 787 66999999998765433   3699


Q ss_pred             EEEecccc
Q 021008          196 VVFLAALV  203 (318)
Q Consensus       196 ~V~~aalv  203 (318)
                      .|++++-+
T Consensus       169 ~VL~DaPC  176 (293)
T d2b9ea1         169 YILLDPSC  176 (293)
T ss_dssp             EEEECCCC
T ss_pred             EEeecCcc
Confidence            99988743

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2e-06  Score=71.31  Aligned_cols=100  Identities=17%  Similarity=0.172  Sum_probs=69.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc----CcCC-C
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV----SSAL-K  192 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l----~~~l-~  192 (318)
                      ..++++|+.+|+||+|+.++.+|+..  |+ +|+++|.+++..+.|+++=..     .-+.....|..+.    .... .
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~--G~~~Vi~~d~~~~rl~~a~~~Ga~-----~~~~~~~~~~~~~~~~~~~~~g~   96 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKEIGAD-----LVLQISKESPQEIARKVEGQLGC   96 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTTCS-----EEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHc--CCceEEeccCCHHHHHHHHHhCCc-----ccccccccccccccccccccCCC
Confidence            57889999999999999999999864  76 899999999999999875221     1111111111111    0111 2


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .+|+|+-..  |     ....++...+.++|||++++-..
T Consensus        97 g~Dvvid~~--G-----~~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          97 KPEVTIECT--G-----AEASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             CCSEEEECS--C-----CHHHHHHHHHHSCTTCEEEECSC
T ss_pred             CceEEEecc--C-----CchhHHHHHHHhcCCCEEEEEec
Confidence            689988654  2     13467888899999999988763

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.18  E-value=4.9e-06  Score=70.86  Aligned_cols=107  Identities=15%  Similarity=0.108  Sum_probs=82.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-----CCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-----ALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-----~l~~  193 (318)
                      +.++..++|..+|++|.|...|-+    +++|+|+|+||++++.|++..      ..++.|+.++-.++..     ..+.
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~----~~~viaiD~D~~ai~~a~~~~------~~~~~~~~~~f~~~~~~l~~~~~~~   85 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILER----GGRVIGLDQDPEAVARAKGLH------LPGLTVVQGNFRHLKRHLAALGVER   85 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHTC------CTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcc----cCcEEEEhhhhhHHHHHhhcc------ccceeEeehHHHHHHHHHHHcCCCc
Confidence            578899999999999999877653    679999999999999998742      3689999998877532     2347


Q ss_pred             ccEEEeccccCC-C-------hhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          194 YEVVFLAALVGM-D-------KDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       194 fD~V~~aalvgm-~-------~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                      +|.|+++--+.. +       .....+.|+...+.|+|||++++-+.|..
T Consensus        86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~  135 (182)
T d1wg8a2          86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSL  135 (182)
T ss_dssp             EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHH
T ss_pred             cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccc
Confidence            999998753311 0       12344578888999999999998886654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.17  E-value=5.5e-07  Score=74.30  Aligned_cols=96  Identities=17%  Similarity=0.098  Sum_probs=67.2

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc----CcCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV----SSALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l----~~~l~~f  194 (318)
                      ..++++|+.+|+|++|+.++.+|+.+  |++|+++|.+++..+.++++-..        .++..+-.+.    ......+
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~Ga~--------~~i~~~~~~~~~~~~~~~~g~   94 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLGAS--------LTVNARQEDPVEAIQRDIGGA   94 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCS--------EEEETTTSCHHHHHHHHHSSE
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhccCcc--------ccccccchhHHHHHHHhhcCC
Confidence            57899999999999999999999864  89999999999999988764221        1222111111    1111245


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |.++..+..       ...++...+.++|||++++-.
T Consensus        95 ~~~i~~~~~-------~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          95 HGVLVTAVS-------NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             EEEEECCSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred             ccccccccc-------chHHHHHHHHhcCCcEEEEEE
Confidence            655555421       235677889999999998854

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.12  E-value=7.6e-06  Score=75.11  Aligned_cols=110  Identities=15%  Similarity=0.228  Sum_probs=86.3

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      +.++.+|||+-+||+|-|+. +|......+.|+++|+++..+...++..++ .|. .++.+...|...++.....||.|+
T Consensus       114 ~~~g~~vlD~CAapGgKt~~-l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r-~~~-~~i~~~~~d~~~~~~~~~~fD~IL  190 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSY-LAQLMRNDGVIYAFDVDENRLRETRLNLSR-LGV-LNVILFHSSSLHIGELNVEFDKIL  190 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHH-HHHHTTTCSEEEEECSCHHHHHHHHHHHHH-HTC-CSEEEESSCGGGGGGGCCCEEEEE
T ss_pred             CCccceeeecccchhhhhHh-hhhhcccccceeeeccCHHHHHHHHHHHHH-HHh-hccccccccccccccccccccEEE
Confidence            47889999999999877764 565554578999999999999999999988 777 667888889888765556899999


Q ss_pred             ecccc---CC-----------Ch-------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALV---GM-----------DK-------DEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalv---gm-----------~~-------~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +++-.   |.           ..       .--.+++.+..+.+||||.||+-.
T Consensus       191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT  244 (313)
T d1ixka_         191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  244 (313)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence            88743   21           11       112357788899999999998865

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=1.4e-06  Score=72.18  Aligned_cols=103  Identities=14%  Similarity=0.187  Sum_probs=70.9

Q ss_pred             HHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC
Q 021008          113 ILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK  192 (318)
Q Consensus       113 ~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~  192 (318)
                      .+.+....++++||.+|+|++|+.++.+|+.+  |++++.+|.+++..+.++++-..       ..+...+-.......+
T Consensus        22 al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~lGad-------~~i~~~~~~~~~~~~~   92 (168)
T d1uufa2          22 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKALGAD-------EVVNSRNADEMAAHLK   92 (168)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHTCS-------EEEETTCHHHHHTTTT
T ss_pred             HHHHhCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhccCCc-------EEEECchhhHHHHhcC
Confidence            33333358899999999999999999999864  99999999999988888765322       1221111111222334


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .||+|+-..-.  .     ..++...+.++|||++++-.
T Consensus        93 ~~D~vid~~g~--~-----~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          93 SFDFILNTVAA--P-----HNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             CEEEEEECCSS--C-----CCHHHHHTTEEEEEEEEECC
T ss_pred             CCceeeeeeec--c-----hhHHHHHHHHhcCCEEEEec
Confidence            79998865422  1     13445568999999998865

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=1.4e-06  Score=73.00  Aligned_cols=97  Identities=16%  Similarity=0.181  Sum_probs=67.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc-------ccccCcCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD-------IMNVSSAL  191 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD-------a~~l~~~l  191 (318)
                      .++++||.+|+||+|+.++.+|+.+  |+ +|+++|.+++..+.|+++-..     .-+.....|       +.++. .-
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~--Ga~~Vi~~~~~~~~~~~a~~lGa~-----~vi~~~~~~~~~~~~~i~~~~-~~   98 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAEEIGAD-----LTLNRRETSVEERRKAIMDIT-HG   98 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHHHTTCS-----EEEETTTSCHHHHHHHHHHHT-TT
T ss_pred             CCCCEEEEECCCccchhheeccccc--ccccccccccccccccccccccce-----EEEeccccchHHHHHHHHHhh-CC
Confidence            6789999999999999999999864  87 899999999999998875221     111111111       11221 12


Q ss_pred             CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..||+||-..  |-     ...++...+.++|||++++-.
T Consensus        99 ~g~Dvvid~v--G~-----~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          99 RGADFILEAT--GD-----SRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             SCEEEEEECS--SC-----TTHHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEeecC--Cc-----hhHHHHHHHHhcCCCEEEEEe
Confidence            3699998554  21     235677779999999997764

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.09  E-value=6.5e-06  Score=72.68  Aligned_cols=88  Identities=14%  Similarity=0.099  Sum_probs=62.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++++||+||+|+|-+|.. |++.   +.+|++||+|+..++..++....    ..+++++.+|+.+.+.... .+..+
T Consensus        19 ~~~~d~VlEIGpG~G~LT~~-Ll~~---~~~v~avE~D~~l~~~l~~~~~~----~~n~~i~~~D~l~~~~~~~-~~~~v   89 (235)
T d1qama_          19 LNEHDNIFEIGSGKGHFTLE-LVQR---CNFVTAIEIDHKLCKTTENKLVD----HDNFQVLNKDILQFKFPKN-QSYKI   89 (235)
T ss_dssp             CCTTCEEEEECCTTSHHHHH-HHHH---SSEEEEECSCHHHHHHHHHHTTT----CCSEEEECCCGGGCCCCSS-CCCEE
T ss_pred             CCCCCeEEEECCCchHHHHH-HHhC---cCceEEEeeccchHHHHHHHhhc----ccchhhhhhhhhhcccccc-cccee
Confidence            36889999999998888865 5553   78999999999999999887654    3789999999998643322 22334


Q ss_pred             eccccCCChhHHHHHHHHHH
Q 021008          199 LAALVGMDKDEKIRVIDHLA  218 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~  218 (318)
                      ++.+   +-.--..++..+.
T Consensus        90 v~NL---PYnIss~il~~ll  106 (235)
T d1qama_          90 FGNI---PYNISTDIIRKIV  106 (235)
T ss_dssp             EEEC---CGGGHHHHHHHHH
T ss_pred             eeee---hhhhhHHHHHHHH
Confidence            4553   2223344555554

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.07  E-value=1.6e-06  Score=71.09  Aligned_cols=100  Identities=13%  Similarity=0.050  Sum_probs=67.5

Q ss_pred             ccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCcCCCCccE
Q 021008          118 CSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSSALKDYEV  196 (318)
Q Consensus       118 ~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~~l~~fD~  196 (318)
                      ...++++||.+|+||+|+.++.+|+.  .|++|+++|.+++..+.++++     |...-+.....|..+ +.....++|.
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~--~g~~v~~~~~~~~r~~~~k~~-----Ga~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKA--MGLNVVAVDIGDEKLELAKEL-----GADLVVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHT-----TCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhc--CCCeEeccCCCHHHhhhhhhc-----CcceecccccchhhhhcccccCCCce
Confidence            35889999999999999999999986  589999999999999888764     221100000011111 1111124555


Q ss_pred             EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +++++..       ...++...+.++|||++++-.
T Consensus        97 ~v~~~~~-------~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          97 AVVTAVS-------KPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             EEESSCC-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEeecCC-------HHHHHHHHHHhccCCceEecc
Confidence            5555521       346778889999999998864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.02  E-value=1e-06  Score=75.45  Aligned_cols=107  Identities=14%  Similarity=0.167  Sum_probs=72.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC--C--CCeEEEEccccccC-------
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL--S--TRMFFHTTDIMNVS-------  188 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl--~--~ri~f~~gDa~~l~-------  188 (318)
                      .+|.+|+.||.|-.|+.|+..|.++  |++|+.+|++++..+.-+++..+-..+  .  ...+-..+.+.++.       
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~  104 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  104 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH
Confidence            6899999999999999999999975  999999999999999988875531100  0  01111112222221       


Q ss_pred             -----cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          189 -----SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       189 -----~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                           ..+...|+|+.+++++-.+.+|. +-+++.+.||||.+++=
T Consensus       105 ~~~l~~~l~~aDlVI~talipG~~aP~l-it~~mv~~Mk~GSVIVD  149 (183)
T d1l7da1         105 AEAVLKELVKTDIAITTALIPGKPAPVL-ITEEMVTKMKPGSVIID  149 (183)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTSCCCCC-SCHHHHTTSCTTCEEEE
T ss_pred             HHHHHHHHHhhhhheeeeecCCccccee-ehHHHHHhcCCCcEEEE
Confidence                 12457899999999853333433 66778899999998753

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.01  E-value=8.7e-07  Score=74.51  Aligned_cols=98  Identities=15%  Similarity=0.165  Sum_probs=68.5

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc----ccccCcCCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD----IMNVSSALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD----a~~l~~~l~~  193 (318)
                      ..++++||.+|+||+|+.++.+|+.  .|+ +|+++|.+++..+.|+++=..     .-+.+...+    +.++. .-..
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~--~Ga~~Vi~~d~~~~r~~~a~~lGa~-----~~i~~~~~~~~~~v~~~t-~g~G   96 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKL--RGAGRIIGVGSRPICVEAAKFYGAT-----DILNYKNGHIEDQVMKLT-NGKG   96 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHT--TTCSCEEEECCCHHHHHHHHHHTCS-----EEECGGGSCHHHHHHHHT-TTSC
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhc--ccccccccccchhhhHHHHHhhCcc-----ccccccchhHHHHHHHHh-hccC
Confidence            4789999999999999999999985  476 799999999999999875321     111111111    11221 1136


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||+||-..-.       ...+++..+.++|||++++-.
T Consensus        97 ~D~vid~~g~-------~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          97 VDRVIMAGGG-------SETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             EEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred             cceEEEccCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence            9998855421       235677779999999998865

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=8.7e-06  Score=73.60  Aligned_cols=109  Identities=13%  Similarity=0.128  Sum_probs=79.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-cCCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-SALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-~~l~~fD~V  197 (318)
                      +.++.+|||+-+||+|-|+. +|.. ..+..|+++|+|+..+...++.+++ .|.. .+.....|..... .....||.|
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~-la~l-~~~~~i~a~d~~~~R~~~l~~~~~r-~g~~-~~~~~~~~~~~~~~~~~~~fd~I  175 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTH-ILEV-APEAQVVAVDIDEQRLSRVYDNLKR-LGMK-ATVKQGDGRYPSQWCGEQQFDRI  175 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHH-HHHH-CTTCEEEEEESSTTTHHHHHHHHHH-TTCC-CEEEECCTTCTHHHHTTCCEEEE
T ss_pred             ccccceeEeccCccccchhh-hhhh-hhhhhhhhhhcchhhhhhHhhhhhc-cccc-ceeeeccccccchhcccccccEE
Confidence            47889999999999999975 4543 4678999999999999999999998 7764 3333333333221 122479999


Q ss_pred             Eecccc---CC---ChhH---------------HHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALV---GM---DKDE---------------KIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalv---gm---~~~~---------------k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++++-+   |.   +.+-               -.++|.+..+.+||||+||+-.
T Consensus       176 L~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT  230 (284)
T d1sqga2         176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  230 (284)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            988744   21   1111               3568888999999999999865

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.96  E-value=5.5e-06  Score=78.03  Aligned_cols=107  Identities=13%  Similarity=0.088  Sum_probs=82.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC--------------CCeEEEEcccc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS--------------TRMFFHTTDIM  185 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~--------------~ri~f~~gDa~  185 (318)
                      -.+.+|||..||. |.=++.+|++. +...|+..|+|++++++++++++. -+.+              ..+.+.+.|+.
T Consensus        44 ~~~~~vLD~~sas-G~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~l-N~~~~~~~~~~~~~~~~~~~~~~~~~Da~  120 (375)
T d2dula1          44 LNPKIVLDALSAT-GIRGIRFALET-PAEEVWLNDISEDAYELMKRNVML-NFDGELRESKGRAILKGEKTIVINHDDAN  120 (375)
T ss_dssp             HCCSEEEESSCTT-SHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHH-HCCSCCEECSSEEEEESSSEEEEEESCHH
T ss_pred             hCCCEEEEcCCCc-cHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHh-cCccccccccccccccccceeEeehhhhh
Confidence            4789999999996 55556667653 456899999999999999999875 3332              35778888887


Q ss_pred             ccCcCCC-CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          186 NVSSALK-DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       186 ~l~~~l~-~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      .+....+ .||+|.++-+ |    ....+++...+.++.||.|.+...++
T Consensus       121 ~~~~~~~~~fDvIDiDPf-G----s~~pfldsAi~a~~~~Gll~vTaTD~  165 (375)
T d2dula1         121 RLMAERHRYFHFIDLDPF-G----SPMEFLDTALRSAKRRGILGVTATDG  165 (375)
T ss_dssp             HHHHHSTTCEEEEEECCS-S----CCHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             hhhHhhcCcCCcccCCCC-C----CcHHHHHHHHHHhccCCEEEEEecCc
Confidence            6544333 6999999974 3    33669999999999999999977443

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.89  E-value=3.8e-06  Score=71.80  Aligned_cols=103  Identities=12%  Similarity=0.079  Sum_probs=71.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE---ccc----cccCcCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT---TDI----MNVSSAL  191 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~---gDa----~~l~~~l  191 (318)
                      ..++++||.+||||+|+.+..+|+.. ...+|+.+|.+++..+.|+++-..       . ++.   .|.    .++. .-
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~Ga~-------~-~~~~~~~~~~~~i~~~t-~g   92 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQGFE-------I-ADLSLDTPLHEQIAALL-GE   92 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCE-------E-EETTSSSCHHHHHHHHH-SS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhcccc-------E-EEeCCCcCHHHHHHHHh-CC
Confidence            58999999999999999999999853 455999999999999999875221       1 111   111    1121 22


Q ss_pred             CCccEEEeccccC--------CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          192 KDYEVVFLAALVG--------MDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       192 ~~fD~V~~aalvg--------m~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..+|++|-+.--.        +......+.++...+.++|||++++-.
T Consensus        93 ~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          93 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence            3689988443110        001124568999999999999998765

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.87  E-value=1.5e-05  Score=72.40  Aligned_cols=111  Identities=19%  Similarity=0.193  Sum_probs=75.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHH---HhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLA---INHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA---~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      ..+.+|+|.|||.+++....+.   ++......++|+|+|+.++..|+.....   .+....+..+|..... ....||+
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~-~~~~fD~  191 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL---QRQKMTLLHQDGLANL-LVDPVDV  191 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH---HTCCCEEEESCTTSCC-CCCCEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH---hhhhhhhhcccccccc-ccccccc
Confidence            5678999999998766543322   1223466899999999999999888765   2356678888876642 3358999


Q ss_pred             EEeccccCC--Chh---------------HHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          197 VFLAALVGM--DKD---------------EKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       197 V~~aalvgm--~~~---------------~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      |+..--.+.  ...               -...+++++.+.|+|||++++--+.+
T Consensus       192 vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         192 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             cccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            985421111  111               12347999999999999876655443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.86  E-value=1.9e-05  Score=65.67  Aligned_cols=97  Identities=9%  Similarity=0.019  Sum_probs=68.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-----CCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-----ALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-----~l~~  193 (318)
                      ..++++||.+|+|++|+.++.+|+.+ ....|+.+|.+++..+.|+++-..        .++..+-.+...     ..+.
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~-g~~~v~~~~~~~~k~~~a~~~Ga~--------~~i~~~~~~~~~~i~~~t~gg   96 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQLGAT--------HVINSKTQDPVAAIKEITDGG   96 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHHTCS--------EEEETTTSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEeCCCHHHhhhhhccccc-ccceeeeeccHHHHHHHHHHcCCe--------EEEeCCCcCHHHHHHHHcCCC
Confidence            47899999999999999999999864 234678889999999999875321        222222121110     1237


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ||+|+-..-       ....++...+.++|||++++-.
T Consensus        97 ~D~vid~~G-------~~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          97 VNFALESTG-------SPEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             EEEEEECSC-------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             CcEEEEcCC-------cHHHHHHHHhcccCceEEEEEe
Confidence            999996542       1346677789999999998765

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.85  E-value=3e-05  Score=63.47  Aligned_cols=89  Identities=19%  Similarity=0.237  Sum_probs=63.1

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      +||.+||+|.+|.+-. .|.+   .|.+|+++|++++..+.|++.     |.-+.   ...+.    ......|+|+++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~---~g~~V~~~d~~~~~~~~a~~~-----~~~~~---~~~~~----~~~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRR---RGHYLIGVSRQQSTCEKAVER-----QLVDE---AGQDL----SLLQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHT-----TSCSE---EESCG----GGGTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHH---CCCEEEEEECCchHHHHHHHh-----hccce---eeeec----ccccccccccccC
Confidence            5899999998876532 3333   489999999999988887653     22111   11111    2335799999875


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                          +.....++++++...++|+.+++--
T Consensus        66 ----p~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          66 ----PIQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             ----CHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             ----cHhhhhhhhhhhhhhcccccceeec
Confidence                5678889999999999999877543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.83  E-value=5.9e-05  Score=62.99  Aligned_cols=99  Identities=14%  Similarity=0.038  Sum_probs=68.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc--cccC--cCCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI--MNVS--SALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa--~~l~--~~l~~  193 (318)
                      ..++++||.+||||+|+.++.+|+.+  |+ +|+.+|++++..+.|+++=..     .-+.+...|-  ....  ..-..
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~--Ga~~Vi~~d~~~~r~~~a~~~Ga~-----~~i~~~~~~~~~~~~~~~~~~~G   98 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKALGAT-----DCLNPRELDKPVQDVITELTAGG   98 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTTCS-----EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHh--CCceeeeeccchHHHHHHHHhCCC-----cccCCccchhhhhhhHhhhhcCC
Confidence            47889999999999999999999864  76 799999999999998875322     1111111110  0000  11237


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      +|+||-..-.       ...+++..+.++|| |++++-.
T Consensus        99 ~d~vie~~G~-------~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          99 VDYSLDCAGT-------AQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             BSEEEESSCC-------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             CcEEEEeccc-------chHHHHHHHHhhcCCeEEEecC
Confidence            9999865421       34677888999996 8998865

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.79  E-value=2.1e-06  Score=76.49  Aligned_cols=75  Identities=19%  Similarity=0.182  Sum_probs=55.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++++||+||+|+|.+|.. |++.   +.+|++||+|+..++.+++...    ...+++++++|+.+++.....+ ..+
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~-L~~~---~~~v~aIE~D~~l~~~l~~~~~----~~~n~~ii~~D~l~~~~~~~~~-~~v   97 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTK-LAKI---SKQVTSIELDSHLFNLSSEKLK----LNTRVTLIHQDILQFQFPNKQR-YKI   97 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHH-HHHH---SSEEEESSSSCSSSSSSSCTTT----TCSEEEECCSCCTTTTCCCSSE-EEE
T ss_pred             CCCCCeEEEECCCccHHHHH-HHhh---cCceeEeeecccchhhhhhhhh----hccchhhhhhhhhcccccccee-eeE
Confidence            46789999999999888865 6653   7899999999988877655443    3478999999999875443333 344


Q ss_pred             eccc
Q 021008          199 LAAL  202 (318)
Q Consensus       199 ~aal  202 (318)
                      ++.+
T Consensus        98 v~NL  101 (245)
T d1yuba_          98 VGNI  101 (245)
T ss_dssp             EEEC
T ss_pred             eeee
Confidence            4553

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=4.6e-05  Score=68.79  Aligned_cols=90  Identities=14%  Similarity=0.150  Sum_probs=65.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..+++.|++||+|++.+|.. |+++   +.+|++||+|+..++.-++.+.. .....+++++.+|+...  ++..++.|+
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~-Ll~~---~~~v~aiE~D~~l~~~L~~~~~~-~~~~~~~~~i~~D~l~~--~~~~~~~vV   91 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVK-LLEK---AKKVVACELDPRLVAELHKRVQG-TPVASKLQVLVGDVLKT--DLPFFDTCV   91 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHH-HHHH---SSEEEEEESCHHHHHHHHHHHTT-STTGGGEEEEESCTTTS--CCCCCSEEE
T ss_pred             CCCCCEEEEECCCchHHHHH-HHhc---CCcEEEEEEccchhHHHHHHHhh-hccccchhhhHHHHhhh--hhhhhhhhh
Confidence            36789999999999888875 4543   78999999999999999988876 55668999999999875  333445443


Q ss_pred             eccccCCChhHHHHHHHHHHH
Q 021008          199 LAALVGMDKDEKIRVIDHLAK  219 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r  219 (318)
                       +.+   +-.--..++..+..
T Consensus        92 -~NL---PY~Iss~il~~~~~  108 (278)
T d1zq9a1          92 -ANL---PYQISSPFVFKLLL  108 (278)
T ss_dssp             -EEC---CGGGHHHHHHHHHH
T ss_pred             -cch---HHHHHHHHHHHHHh
Confidence             443   22233445555443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.73  E-value=6.7e-05  Score=61.37  Aligned_cols=93  Identities=19%  Similarity=0.148  Sum_probs=64.2

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      ++|+.||+|-+|.+-..-.++..+..+|+|+|.|++..+.|++.-     .-+..   ..+....  .....|+|+++. 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~-----~~~~~---~~~~~~~--~~~~~dlIila~-   70 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-----IIDEG---TTSIAKV--EDFSPDFVMLSS-   70 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-----SCSEE---ESCGGGG--GGTCCSEEEECS-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh-----cchhh---hhhhhhh--hccccccccccC-
Confidence            379999999888775433333335679999999999999987642     21111   1121111  223689999887 


Q ss_pred             cCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          203 VGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                         +...-.++++++.+.++++..++-
T Consensus        71 ---p~~~~~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          71 ---PVRTFREIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             ---CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             ---Cchhhhhhhhhhhccccccccccc
Confidence               556778899999999999876643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.72  E-value=4e-05  Score=63.30  Aligned_cols=96  Identities=14%  Similarity=0.023  Sum_probs=68.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc---cC--cCCCCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN---VS--SALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~---l~--~~l~~f  194 (318)
                      .++++||.+|+|++|+.++.+|+.+ -...|+++|.+++..+.++++-..        .++..+-.+   ..  .....+
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~-g~~~vv~~~~~~~k~~~~~~~ga~--------~~i~~~~~~~~~~~~~~~~~g~  101 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVM-TPATVIALDVKEEKLKLAERLGAD--------HVVDARRDPVKQVMELTRGRGV  101 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESSHHHHHHHHHTTCS--------EEEETTSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhh-cCcccccccchhHHHHHHhhcccc--------eeecCcccHHHHHHHhhCCCCc
Confidence            6789999999999999999999864 345889999999998888875332        222222111   10  122369


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+||-..-.       ...++...+.++|||++++-.
T Consensus       102 d~vid~~g~-------~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         102 NVAMDFVGS-------QATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEEEESSCC-------HHHHHHGGGGEEEEEEEEECC
T ss_pred             eEEEEecCc-------chHHHHHHHHHhCCCEEEEEe
Confidence            999866521       335777789999999998754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.70  E-value=1.1e-05  Score=67.34  Aligned_cols=100  Identities=12%  Similarity=0.014  Sum_probs=65.9

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc--cccC--cCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI--MNVS--SALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa--~~l~--~~l~~f  194 (318)
                      ..++++||.+|+|++|+.++.+|+.+ -..+|+++|++++..+.|+++=..     .-+.+...|.  .+..  ..-..+
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~-G~~~Vi~~d~~~~kl~~a~~lGa~-----~~i~~~~~d~~~~~~~~~~~~~G~   98 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIELGAT-----ECLNPKDYDKPIYEVICEKTNGGV   98 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHTTCS-----EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHc-CCceeeccCChHHHHHHHHHcCCc-----EEEcCCCchhHHHHHHHHhcCCCC
Confidence            58899999999999999999999864 235899999999999999875332     2122122221  1110  122379


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccC-CeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAP-GALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~Lkp-Gg~lv~r~  231 (318)
                      |+|+...-.       ...+++....+++ +|++++-.
T Consensus        99 d~vid~~g~-------~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          99 DYAVECAGR-------IETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             SEEEECSCC-------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             cEEEEcCCC-------chHHHHHHHHHHHhcCceEEEE
Confidence            999966521       2344555566655 58887755

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3.2e-05  Score=63.90  Aligned_cols=98  Identities=7%  Similarity=0.039  Sum_probs=67.3

Q ss_pred             cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-c--CcCCCCc
Q 021008          119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-V--SSALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l--~~~l~~f  194 (318)
                      ..++++||..|+ |++|..++.+|+.+  |++|++++.+++..+.++++     |...-+.+...|..+ +  ...-..|
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~~-----Ga~~vi~~~~~~~~~~i~~~t~~~g~   98 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQN-----GAHEVFNHREVNYIDKIKKYVGEKGI   98 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT-----TCSEEEETTSTTHHHHHHHHHCTTCE
T ss_pred             CCCCCEEEEEecccccccccccccccc--Cccccccccccccccccccc-----CcccccccccccHHHHhhhhhccCCc
Confidence            468899999994 99999999999864  99999999999887777653     332211111111111 0  0122369


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+-..      .  ...++...+.|+|||+++.-.
T Consensus        99 d~v~d~~------g--~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          99 DIIIEML------A--NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             EEEEESC------H--HHHHHHHHHHEEEEEEEEECC
T ss_pred             eEEeecc------c--HHHHHHHHhccCCCCEEEEEe
Confidence            9888543      1  236788889999999998753

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.66  E-value=1.9e-05  Score=65.59  Aligned_cols=95  Identities=15%  Similarity=0.138  Sum_probs=65.7

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ..++++||..| +|++|..++.+|+.  .|++|++++.+++..+.++++     |...  .+-..|..+-......+|+|
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~--~G~~vi~~~~~~~~~~~~~~l-----Ga~~--~i~~~~~~~~~~~~~g~D~v   95 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARA--MGLRVLAAASRPEKLALPLAL-----GAEE--AATYAEVPERAKAWGGLDLV   95 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHH--TTCEEEEEESSGGGSHHHHHT-----TCSE--EEEGGGHHHHHHHTTSEEEE
T ss_pred             CCCCCEEEEEeccccchhhhhhhhcc--ccccccccccccccccccccc-----ccce--eeehhhhhhhhhcccccccc
Confidence            47889999999 59999999999986  499999999999888877653     3322  22222221111233479998


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |-.  +| +      .+....+.|+|||+++.-.
T Consensus        96 ~d~--~G-~------~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          96 LEV--RG-K------EVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             EEC--SC-T------THHHHHTTEEEEEEEEEC-
T ss_pred             ccc--cc-h------hHHHHHHHHhcCCcEEEEe
Confidence            842  44 1      2455678999999998753

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.66  E-value=3.6e-05  Score=63.23  Aligned_cols=102  Identities=11%  Similarity=0.105  Sum_probs=69.5

Q ss_pred             HhhcccCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----
Q 021008          114 LTQHCSRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----  188 (318)
Q Consensus       114 l~~~~~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----  188 (318)
                      +.+....++++|+.+|+ |++|+.++.+++.+ ...+|+++|.+++..+.++++=..        .++..+-.+..    
T Consensus        20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~~Ga~--------~~i~~~~~~~~~~~~   90 (170)
T d1jvba2          20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRAGAD--------YVINASMQDPLAEIR   90 (170)
T ss_dssp             HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHHTCS--------EEEETTTSCHHHHHH
T ss_pred             HHHhCCCCCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHHcCCc--------eeeccCCcCHHHHHH
Confidence            33334578899999995 88999888888864 347999999999999998875221        12222211210    


Q ss_pred             --cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          189 --SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       189 --~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                        ..-+.||+|+-.+-       -...++...+.++|||++++-.
T Consensus        91 ~~~~~~~~d~vid~~g-------~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          91 RITESKGVDAVIDLNN-------SEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             HHTTTSCEEEEEESCC-------CHHHHTTGGGGEEEEEEEEECC
T ss_pred             HHhhcccchhhhcccc-------cchHHHhhhhhcccCCEEEEec
Confidence              11236998886542       1345666789999999998775

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.58  E-value=0.00011  Score=61.38  Aligned_cols=101  Identities=13%  Similarity=0.051  Sum_probs=65.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-c-cC--cCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-N-VS--SALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~-l~--~~l~~f  194 (318)
                      ..+++.|+-+|+|++|+.++.+|+.+ -..+|+++|++++.++.|+++=+.     .-+.....|.. + +.  ..-..+
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~kl~~Ak~~GA~-----~~in~~~~~~~~~~~~~~~~g~G~  100 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKDKFEKAMAVGAT-----ECISPKDSTKPISEVLSEMTGNNV  100 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHHTCS-----EEECGGGCSSCHHHHHHHHHTSCC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHc-CCceEEEecCcHHHHHHHHhcCCc-----EEECccccchHHHHHHHHhccccc
Confidence            47889999999999999999999864 236899999999999999987443     11111111110 0 00  112379


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+...-      ....+...+....+++|++++-.
T Consensus       101 d~vi~~~g------~~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2         101 GYTFEVIG------HLETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             CEEEECSC------CHHHHHHHHTTSCTTTCEEEECS
T ss_pred             eEEEEeCC------chHHHHHHHHHhhcCCeEEEEEE
Confidence            98886652      12222223334445658888765

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=0.00021  Score=60.22  Aligned_cols=121  Identities=15%  Similarity=0.163  Sum_probs=79.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--------cCC
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--------SAL  191 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--------~~l  191 (318)
                      .++.+|+|+||+|+|.+-. ++++..+...|+++|+.+-             ..-..+.|+++|..+..        ...
T Consensus        21 k~~~~vlDLg~aPGgw~q~-~~~~~~~~~~v~~vDl~~~-------------~~i~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQY-VVTQIGGKGRIIACDLLPM-------------DPIVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHH-HHHHHCTTCEEEEEESSCC-------------CCCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEeccCCcceEE-EEeeccccceEEEeecccc-------------cccCCceEeecccccchhhhhhhhhccC
Confidence            7889999999999999864 4444446789999998761             12367899999998632        122


Q ss_pred             CCccEEEecccc---CCChhH-------HHHHHHHHHHhccCCeEEEEEcCCCcc--cccccCCCccccC-CcEEEEEEc
Q 021008          192 KDYEVVFLAALV---GMDKDE-------KIRVIDHLAKYMAPGALLMLRSAHGAR--AFLYPVVDPSDLL-GFEVLSVFH  258 (318)
Q Consensus       192 ~~fD~V~~aalv---gm~~~~-------k~~vl~~l~r~LkpGg~lv~r~~~g~r--~~lYP~v~~~~l~-gf~~~~~~~  258 (318)
                      ..||+|..+...   |....+       -...+.-..+.|+|||.+++--.+|..  .++|      .++ -|+.+.++.
T Consensus        87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~------~l~~~F~~V~~~K  160 (180)
T d1ej0a_          87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLR------EIRSLFTKVKVRK  160 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHH------HHHHHEEEEEEEC
T ss_pred             cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHH------HHHhhcCEEEEEC
Confidence            479999977643   221111       123455567899999999997755432  1221      222 566666666


Q ss_pred             Cc
Q 021008          259 PT  260 (318)
Q Consensus       259 p~  260 (318)
                      |.
T Consensus       161 P~  162 (180)
T d1ej0a_         161 PD  162 (180)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.53  E-value=9.6e-05  Score=60.50  Aligned_cols=100  Identities=17%  Similarity=0.205  Sum_probs=67.0

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc-CCCCCCCeE----EEEccccccCcCCCCccEE
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS-DPDLSTRMF----FHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~-~~gl~~ri~----f~~gDa~~l~~~l~~fD~V  197 (318)
                      ++|..||+|++|........+  .|..|+.+|++++.++..++.-.. .........    ....|   +...+..+|+|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~~~~aD~i   76 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSD---IGLAVKDADVI   76 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESC---HHHHHTTCSEE
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhh---hHhHhcCCCEE
Confidence            699999999987775444443  489999999999888877654211 001111111    12222   22223579999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +++-    +......++++++++++++..+++..
T Consensus        77 ii~v----~~~~~~~~~~~i~~~l~~~~~iv~~~  106 (184)
T d1bg6a2          77 LIVV----PAIHHASIAANIASYISEGQLIILNP  106 (184)
T ss_dssp             EECS----CGGGHHHHHHHHGGGCCTTCEEEESS
T ss_pred             EEEE----chhHHHHHHHHhhhccCCCCEEEEeC
Confidence            9864    45677889999999999999877644

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=9.3e-05  Score=65.76  Aligned_cols=61  Identities=15%  Similarity=0.157  Sum_probs=50.1

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV  187 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l  187 (318)
                      ..+++.|++||+|++.+|.. |++   .+.+|++||+|+..++.-++...    ...+++++.+|+.+.
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~-Ll~---~~~~v~aiEiD~~l~~~L~~~~~----~~~~~~ii~~D~l~~   79 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEP-VGE---RLDQLTVIELDRDLAARLQTHPF----LGPKLTIYQQDAMTF   79 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHH-HHT---TCSCEEEECCCHHHHHHHHTCTT----TGGGEEEECSCGGGC
T ss_pred             CCCCCEEEEECCCchHHHHH-HHc---cCCceEEEEeccchhHHHHHHhh----hccchhHHhhhhhhh
Confidence            46789999999999888875 565   37899999999999888776433    347899999999875

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00021  Score=60.54  Aligned_cols=101  Identities=17%  Similarity=0.175  Sum_probs=71.3

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CCCC--------------CCeEEEEc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PDLS--------------TRMFFHTT  182 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~gl~--------------~ri~f~~g  182 (318)
                      +||..||+|.+|-.-..++.+  .|..|+.+|+|+++++.+++.+.+.      .+..              .++++. .
T Consensus         5 kkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~   81 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-T   81 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-S
T ss_pred             EEEEEECcCHHHHHHHHHHHh--CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-c
Confidence            699999999988774333333  4999999999999999887765420      1221              134443 2


Q ss_pred             cccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          183 DIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       183 Da~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |..   ..+.+.|+|+=+. . -+.+.|.++|+++.+.++|+..|...+
T Consensus        82 d~~---~a~~~ad~ViEav-~-E~l~~K~~v~~~l~~~~~~~~ilasnT  125 (192)
T d1f0ya2          82 DAA---SVVHSTDLVVEAI-V-ENLKVKNELFKRLDKFAAEHTIFASNT  125 (192)
T ss_dssp             CHH---HHTTSCSEEEECC-C-SCHHHHHHHHHHHTTTSCTTCEEEECC
T ss_pred             hhH---hhhcccceehhhc-c-cchhHHHHHHHHHhhhcccCceeeccC
Confidence            221   2245688888443 2 267899999999999999999998876

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.39  E-value=7.3e-05  Score=66.53  Aligned_cols=78  Identities=15%  Similarity=0.191  Sum_probs=59.8

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc---CCC----CCCCeEEEEccccccCcCCC-C
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS---DPD----LSTRMFFHTTDIMNVSSALK-D  193 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~---~~g----l~~ri~f~~gDa~~l~~~l~-~  193 (318)
                      +.+|||.=+| +|-.++.+|..   |++||++|.+|.....-+...++   ...    ...||+++++|+.+...... .
T Consensus        89 ~~~VlD~TaG-lG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~  164 (250)
T d2oyra1          89 LPDVVDATAG-LGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPR  164 (250)
T ss_dssp             CCCEEETTCT-TCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSC
T ss_pred             CCEEEECCCc-ccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCC
Confidence            3489999999 89999999973   89999999999877666544432   111    13489999999988655444 7


Q ss_pred             ccEEEecccc
Q 021008          194 YEVVFLAALV  203 (318)
Q Consensus       194 fD~V~~aalv  203 (318)
                      ||+||++=+.
T Consensus       165 ~DvIYlDPMF  174 (250)
T d2oyra1         165 PQVVYLDPMF  174 (250)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999988755

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.23  E-value=0.0017  Score=54.18  Aligned_cols=102  Identities=15%  Similarity=0.150  Sum_probs=69.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++.+|||.|||.+++.. .+.+++.....++|+|+|+.++.           +..+..++++|..... ....||+|+
T Consensus        17 ~~~~~~IlDp~~G~G~fl~-~~~~~~~~~~~i~g~ei~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~fd~ii   83 (223)
T d2ih2a1          17 APRGGRVLEPACAHGPFLR-AFREAHGTAYRFVGVEIDPKALD-----------LPPWAEGILADFLLWE-PGEAFDLIL   83 (223)
T ss_dssp             CCTTCEEEEETCTTCHHHH-HHHHHHCSCSEEEEEESCTTTCC-----------CCTTEEEEESCGGGCC-CSSCEEEEE
T ss_pred             CCCcCEEEECCCchHHHHH-HHHHhccccceEEeeecCHHHHh-----------hcccceeeeeehhccc-cccccceec
Confidence            3678899999999877754 44445545788999999986532           3355678888887653 234899887


Q ss_pred             eccccCC-----------Ch-----------------hHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          199 LAALVGM-----------DK-----------------DEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       199 ~aalvgm-----------~~-----------------~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      ..--.+.           ..                 .-...+++...+.|+|||.+++-.+.
T Consensus        84 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~  146 (223)
T d2ih2a1          84 GNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  146 (223)
T ss_dssp             ECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             ccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence            4321100           00                 01346778899999999998776543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.05  E-value=0.0013  Score=53.47  Aligned_cols=100  Identities=14%  Similarity=0.070  Sum_probs=66.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE--cccccc-C-cCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT--TDIMNV-S-SALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~--gDa~~l-~-~~l~~f  194 (318)
                      ..++++||.+|+|++|+.++.+|+.+ -...|+++|.+++..+.++++=..     .-+.+..  -++... . .....+
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~-G~~~vi~~~~~~~k~~~ak~lGa~-----~~i~~~~~~~~~~~~~~~~~~~g~   99 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEFGAT-----ECINPQDFSKPIQEVLIEMTDGGV   99 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHHTCS-----EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHH-hcCceEEEcccHHHHHHHHHhCCc-----EEEeCCchhhHHHHHHHHHcCCCC
Confidence            58899999999999999999999875 236899999999999999875332     1111100  000000 0 112379


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+|+-..  |     ....++.....+++||.+++-.
T Consensus       100 D~vid~~--G-----~~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2         100 DYSFECI--G-----NVKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             SEEEECS--C-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             cEeeecC--C-----CHHHHHHHHHhhcCCceeEEEE
Confidence            9999553  2     1346677788899997766543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.01  E-value=0.00053  Score=56.29  Aligned_cols=98  Identities=9%  Similarity=0.026  Sum_probs=65.2

Q ss_pred             cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cC--cCCCCc
Q 021008          119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VS--SALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~--~~l~~f  194 (318)
                      ..++++||..| +|++|..++.+|+.+  |++|++++.+++-.+.+++     .|...-+.....|..+ +.  ..-..|
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~-----~Ga~~vi~~~~~~~~~~v~~~t~~~g~   95 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR-----LGVEYVGDSRSVDFADEILELTDGYGV   95 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT-----TCCSEEEETTCSTHHHHHHHHTTTCCE
T ss_pred             CCCCCEEEEECCCCCcccccchhhccc--cccceeeeccccccccccc-----ccccccccCCccCHHHHHHHHhCCCCE
Confidence            36789999988 599999999999864  9999999999877766654     3332111111111111 10  112379


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |+||-..  +      .+.++...+.|+|+|+++.-.
T Consensus        96 d~v~d~~--g------~~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          96 DVVLNSL--A------GEAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             EEEEECC--C------THHHHHHHHTEEEEEEEEECS
T ss_pred             EEEEecc--c------chHHHHHHHHhcCCCEEEEEc
Confidence            9999543  2      135677789999999998753

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.0013  Score=53.63  Aligned_cols=97  Identities=11%  Similarity=0.083  Sum_probs=65.3

Q ss_pred             cCCCCEEEEEccCC-ChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc----ccCcCCCC
Q 021008          119 SRFPTKIAFIGSGP-LPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM----NVSSALKD  193 (318)
Q Consensus       119 ~~~~~rVL~IGsGp-lp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~----~l~~~l~~  193 (318)
                      ..++++||..|+|+ +|..++.+|+.  .|++|+++|.+++-.+.++++-..     .-+.+...|..    ++. .-..
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~--~Ga~Vi~~~~s~~k~~~~~~lGa~-----~vi~~~~~d~~~~v~~~t-~g~g   97 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALKAGAW-----QVINYREEDLVERLKEIT-GGKK   97 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHTCS-----EEEETTTSCHHHHHHHHT-TTCC
T ss_pred             CCCCCEEEEEccccccchHHHHHHHH--hCCeEeecccchHHHHHHHhcCCe-----EEEECCCCCHHHHHHHHh-CCCC
Confidence            37789999996554 89999999986  499999999999999998765321     11111111211    121 2237


Q ss_pred             ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+|+-..  +   .   +.+....+.++|+|++++-.
T Consensus        98 ~d~v~d~~--g---~---~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          98 VRVVYDSV--G---R---DTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             EEEEEECS--C---G---GGHHHHHHTEEEEEEEEECC
T ss_pred             eEEEEeCc--c---H---HHHHHHHHHHhcCCeeeecc
Confidence            89877543  2   1   14566788999999987754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.85  E-value=0.0053  Score=47.86  Aligned_cols=94  Identities=18%  Similarity=0.126  Sum_probs=62.8

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEEE
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V~  198 (318)
                      ++|+-+|+|.+|.........  .|..|+.||.|++.++.++.   + .    .+.++.||+.+..    ......|.++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~--~g~~v~vid~d~~~~~~~~~---~-~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDKDICKKASA---E-I----DALVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH---H-C----SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCCcceecCChhhhhhhhh---h-h----hhhhccCcccchhhhhhcChhhhhhhc
Confidence            589999999877665433222  48999999999988876543   2 1    3578899998732    2344788776


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ...    +..+..-+...+++.+.+.-++ .+-
T Consensus        71 ~~t----~~d~~N~~~~~~~k~~~~~~iI-~~~   98 (132)
T d1lssa_          71 AVT----GKEEVNLMSSLLAKSYGINKTI-ARI   98 (132)
T ss_dssp             ECC----SCHHHHHHHHHHHHHTTCCCEE-EEC
T ss_pred             ccC----CcHHHHHHHHHHHHHcCCceEE-EEe
Confidence            532    2244455666777888888544 443

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.85  E-value=0.005  Score=51.27  Aligned_cols=101  Identities=15%  Similarity=0.120  Sum_probs=69.5

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-CC--------CCeEEEEccccc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-LS--------TRMFFHTTDIMN  186 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l~--------~ri~f~~gDa~~  186 (318)
                      =+||..||+|.+|..-..++.+  .|.+|+.+|+|+++++.+.+.+...      .+ +.        .++.+ ..+.  
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~--   78 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSAS--KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSY--   78 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSS--
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-cccc--
Confidence            3689999999887764333333  4999999999999999886654420      11 11        11222 1111  


Q ss_pred             cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                        .++...|+|+-+. . -+.+.|.++|.++.+.++|+..|.-.+
T Consensus        79 --~~~~~adlViEav-~-E~l~~K~~lf~~l~~~~~~~~IiaSnT  119 (186)
T d1wdka3          79 --GDFGNVDLVVEAV-V-ENPKVKQAVLAEVENHVREDAILASNT  119 (186)
T ss_dssp             --TTGGGCSEEEECC-C-SCHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred             --ccccccceeeeee-c-chHHHHHHHHHHHHhhcCCCeeEEecc
Confidence              2345789888543 3 377999999999999999999988766

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.81  E-value=0.003  Score=51.50  Aligned_cols=98  Identities=11%  Similarity=0.055  Sum_probs=65.4

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc------CcCCC
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV------SSALK  192 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l------~~~l~  192 (318)
                      ..++++||.+|+|++|++++.+++.+ -+.+|+++|++++..+.++++-..     .  .+...+..+.      ....+
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~-g~~~Vi~~~~~~~k~~~a~~~Ga~-----~--~i~~~~~~~~~~~~~~~~~~~   97 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGAT-----E--CVNPQDYKKPIQEVLTEMSNG   97 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCS-----E--EECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHc-CCceEEeecCcHHHHHHHHHhCCe-----e--EEecCCchhHHHHHHHHHhcC
Confidence            58889999999999999999999864 457999999999999999875432     1  1111111110      01224


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      .+|+||-..-.       ...++.....+++| |.+++-.
T Consensus        98 G~D~vid~~G~-------~~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          98 GVDFSFEVIGR-------LDTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             CBSEEEECSCC-------HHHHHHHHHHBCTTTCEEEECS
T ss_pred             CCCEEEecCCc-------hhHHHHHHHHHhcCCcceEEec
Confidence            79998865421       23445556678776 5666654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.56  E-value=0.0073  Score=48.85  Aligned_cols=47  Identities=17%  Similarity=0.188  Sum_probs=41.0

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHH
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSL  166 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~  166 (318)
                      ..++++|+.+|+|++|+.++.+++.. -+..|+++|.+++..+.|+++
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~-g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHH-hhchheeecchHHHHHHHHHc
Confidence            47889999999999999998888763 566899999999999998874

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.55  E-value=0.0072  Score=49.52  Aligned_cols=96  Identities=6%  Similarity=-0.025  Sum_probs=66.6

Q ss_pred             cCCCCEEEEEccCC-ChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc--c-cC--cCCC
Q 021008          119 SRFPTKIAFIGSGP-LPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM--N-VS--SALK  192 (318)
Q Consensus       119 ~~~~~rVL~IGsGp-lp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~--~-l~--~~l~  192 (318)
                      ..++++||..|+|+ .|..++.+|+.  -|++|++++.+++..+.++++     |.  ...+...|-.  + +.  ..-.
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~--~Ga~vi~~~~~~~~~~~~~~~-----Ga--~~vi~~~~~~~~~~~~~~~~~~   97 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKIAYLKQI-----GF--DAAFNYKTVNSLEEALKKASPD   97 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHT-----TC--SEEEETTSCSCHHHHHHHHCTT
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHc--cCCEEEEeCCCHHHHHHHHhh-----hh--hhhcccccccHHHHHHHHhhcC
Confidence            37889999988854 88899999986  499999999999888877664     22  1222222211  1 10  1223


Q ss_pred             CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .+|+||-..  |      .+.++...+.|+|||++++-.
T Consensus        98 Gvd~v~D~v--G------~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          98 GYDCYFDNV--G------GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             CEEEEEESS--C------HHHHHHHGGGEEEEEEEEECC
T ss_pred             CCceeEEec--C------chhhhhhhhhccCCCeEEeec
Confidence            799988543  2      236778899999999998753

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.53  E-value=0.0012  Score=54.87  Aligned_cols=101  Identities=6%  Similarity=-0.022  Sum_probs=62.9

Q ss_pred             CCCCEEEEE--ccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-------c-
Q 021008          120 RFPTKIAFI--GSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-------S-  189 (318)
Q Consensus       120 ~~~~rVL~I--GsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-------~-  189 (318)
                      .++.+|+.+  |+|++|..++.+|+.+  |++|+++-.+++..+...+.+++ +|...-+..-..|..+..       . 
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~-lGad~vi~~~~~~~~~~~~~v~~~~~~  103 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKE-LGATQVITEDQNNSREFGPTIKEWIKQ  103 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHH-HTCSEEEEHHHHHCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhh-ccccEEEeccccchhHHHHHHHHHHhh
Confidence            677889998  6777889999999974  99999886665555544444554 444332222112222210       0 


Q ss_pred             CCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          190 ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .-+.+|+|| ++ +|      ...+....+.|+|||+++.-.
T Consensus       104 ~g~~vdvv~-D~-vg------~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         104 SGGEAKLAL-NC-VG------GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HTCCEEEEE-ES-SC------HHHHHHHHHTSCTTCEEEECC
T ss_pred             ccCCceEEE-EC-CC------cchhhhhhhhhcCCcEEEEEC
Confidence            113688888 43 32      123466679999999998653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.43  E-value=0.0034  Score=48.75  Aligned_cols=95  Identities=12%  Similarity=0.066  Sum_probs=63.2

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEEE
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V~  198 (318)
                      +|++.+|+|.+|....-...+  .|..|+.||.|++.++.++    . .|    ...+.||+.+..    ....+.|.|+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~--~g~~vvvid~d~~~~~~~~----~-~~----~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHR--MGHEVLAVDINEEKVNAYA----S-YA----THAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCCEEEESCHHHHHHTT----T-TC----SEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCeEEEecCcHHHHHHHH----H-hC----CcceeeecccchhhhccCCccccEEE
Confidence            578899999877765433333  4899999999998888753    2 12    356779998742    1234678777


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      ++.    +..+...++....+.+.|...++.|..
T Consensus        70 ~~~----~~~~~~~~~~~~~~~~~~~~~iiar~~   99 (134)
T d2hmva1          70 VAI----GANIQASTLTTLLLKELDIPNIWVKAQ   99 (134)
T ss_dssp             ECC----CSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             EEc----CchHHhHHHHHHHHHHcCCCcEEeecc
Confidence            654    223444555556666777778888864

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.35  E-value=0.0011  Score=55.33  Aligned_cols=99  Identities=8%  Similarity=0.039  Sum_probs=65.7

Q ss_pred             CCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-cCCCCccEE
Q 021008          120 RFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-SALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-~~l~~fD~V  197 (318)
                      .++++||.-| +|..|..++.||+.  .|++|++..-+++-.++++++-..     .-+.....+..... ..-+.||+|
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~--~Ga~Viat~~s~~k~~~~~~lGa~-----~vi~~~~~~~~~~~~~~~~gvD~v  102 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAK--RGYTVEASTGKAAEHDYLRVLGAK-----EVLAREDVMAERIRPLDKQRWAAA  102 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHH--TTCCEEEEESCTTCHHHHHHTTCS-----EEEECC---------CCSCCEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHH--cCCceEEecCchHHHHHHHhcccc-----eeeecchhHHHHHHHhhccCcCEE
Confidence            6688999999 57788999999986  499999999999999988875332     22221111111111 122379988


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      +- . +|-      ..+....+.|+|||+++.-...
T Consensus       103 id-~-vgg------~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         103 VD-P-VGG------RTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             EE-C-STT------TTHHHHHHTEEEEEEEEECSCC
T ss_pred             EE-c-CCc------hhHHHHHHHhCCCceEEEeecc
Confidence            84 3 321      1356667999999999887654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0011  Score=52.98  Aligned_cols=95  Identities=14%  Similarity=0.132  Sum_probs=57.3

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      +||+.||+|.+|... ..|++   .|..|+.++++++..+.   ...  .+......... -..+.+.....+|+||++-
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~---~G~~V~~~~r~~~~~~~---~~~--~~~~~~~~~~~-~~~~~~~~~~~~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCK---QGHEVQGWLRVPQPYCS---VNL--VETDGSIFNES-LTANDPDFLATSDLLLVTL   71 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSSCCSEEE---EEE--ECTTSCEEEEE-EEESCHHHHHTCSEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHH---CCCceEEEEcCHHHhhh---hcc--ccCCccccccc-cccchhhhhcccceEEEee
Confidence            589999999865543 33444   48999999999853321   111  11111111111 1112222334799999875


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                          ...+-..+++.+.+.++++..++.-
T Consensus        72 ----ka~~~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          72 ----KAWQVSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             ----CGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             ----cccchHHHHHhhccccCcccEEeec
Confidence                3345677899999999998876653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.11  E-value=0.012  Score=46.90  Aligned_cols=90  Identities=14%  Similarity=0.174  Sum_probs=57.1

Q ss_pred             CEEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      .+|.|||+|.+|.+-+. |.+.  .+.+|...|.+++..+..   .++ .|    ++. ..|.    .+....|+||++-
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~--~~~~i~v~~r~~~~~~~l---~~~-~~----~~~-~~~~----~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQ--GGYRIYIANRGAEKRERL---EKE-LG----VET-SATL----PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--CSCEEEEECSSHHHHHHH---HHH-TC----CEE-ESSC----CCCCTTSEEEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC--CCCcEEEEeCChhHHHHh---hhh-cc----ccc-cccc----ccccccceEEEec
Confidence            48999999998776432 3433  247999999999665543   333 22    232 1222    2345789999875


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA  235 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~  235 (318)
                          .    .+.+.++.+-+++.+.+++.-..|.
T Consensus        66 ----k----P~~~~~v~~~l~~~~~~viS~~ag~   91 (152)
T d1yqga2          66 ----K----PQDMEAACKNIRTNGALVLSVAAGL   91 (152)
T ss_dssp             ----C----HHHHHHHHTTCCCTTCEEEECCTTC
T ss_pred             ----C----HHHHHHhHHHHhhcccEEeecccCC
Confidence                2    2445666677777777777665554

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.11  E-value=0.0022  Score=52.91  Aligned_cols=95  Identities=11%  Similarity=0.059  Sum_probs=65.0

Q ss_pred             CCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccCc--CCCCcc
Q 021008          120 RFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVSS--ALKDYE  195 (318)
Q Consensus       120 ~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~~--~l~~fD  195 (318)
                      .++.+||.-| +|..|..++.||+.+  |++|++..-+++-.+.++++-..       ..+...|.. +...  .-+.+|
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k~~~~~~lGad-------~vi~~~~~~~~~~~~~~~~gvd   92 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQLGAS-------EVISREDVYDGTLKALSKQQWQ   92 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHHHTCS-------EEEEHHHHCSSCCCSSCCCCEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHHHHHHHhhccc-------ceEeccchhchhhhcccCCCce
Confidence            4566799888 688999999999974  99999999999888888765332       122212211 1111  123689


Q ss_pred             EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +|+-.  |+      ...+.+..+.|+|||++++-.
T Consensus        93 ~vid~--vg------g~~~~~~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2          93 GAVDP--VG------GKQLASLLSKIQYGGSVAVSG  120 (167)
T ss_dssp             EEEES--CC------THHHHHHHTTEEEEEEEEECC
T ss_pred             EEEec--Cc------HHHHHHHHHHhccCceEEEee
Confidence            88743  22      225667789999999998765

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0072  Score=50.35  Aligned_cols=75  Identities=15%  Similarity=0.201  Sum_probs=51.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH-------------------HHHHHHHHhhcCCCCCCCeEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS-------------------ANSKALSLVSSDPDLSTRMFFH  180 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~-------------------ai~~Ar~~~~~~~gl~~ri~f~  180 (318)
                      ..++||+.||+||.|+++-..+.+  .|.+|+-+|-++.                   .+++-.+.++.     ..++|+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~--~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~-----~gV~i~  113 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEV-----TGVTLK  113 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHH-----HTCEEE
T ss_pred             CCCcEEEEECccHHHHHHHHHHHh--hccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhc-----CCeEEE
Confidence            678999999999999999877764  5999999998762                   33333444444     235665


Q ss_pred             EccccccCcCCCCccEEEeccc
Q 021008          181 TTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       181 ~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      .+.--+. .....||.|+++.-
T Consensus       114 l~~~Vt~-~~~~~~d~vilAtG  134 (179)
T d1ps9a3         114 LNHTVTA-DQLQAFDETILASG  134 (179)
T ss_dssp             ESCCCCS-SSSCCSSEEEECCC
T ss_pred             eCCEEcc-cccccceeEEEeec
Confidence            5433222 12348999988764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.03  E-value=0.0078  Score=45.81  Aligned_cols=92  Identities=7%  Similarity=0.006  Sum_probs=58.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++||.||.|..|.........  .|+.|+.++.+...-  -+.+...     .+++++.....+  .++..+++|+.
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~~~~~~--~~~~~~~-----~~i~~~~~~~~~--~dl~~~~lv~~   78 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLE--AGARLTVNALTFIPQ--FTVWANE-----GMLTLVEGPFDE--TLLDSCWLAIA   78 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESSCCHH--HHHHHTT-----TSCEEEESSCCG--GGGTTCSEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCChH--HHHHHhc-----CCceeeccCCCH--HHhCCCcEEee
Confidence            578999999999877776555544  499999887665421  1223332     568888766543  34567899987


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +.-   +.+...    ++++..++-|+++-
T Consensus        79 at~---d~~~n~----~i~~~a~~~~ilVN  101 (113)
T d1pjqa1          79 ATD---DDTVNQ----RVSDAAESRRIFCN  101 (113)
T ss_dssp             CCS---CHHHHH----HHHHHHHHTTCEEE
T ss_pred             cCC---CHHHHH----HHHHHHHHcCCEEE
Confidence            752   223333    44555666676654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.99  E-value=0.0091  Score=49.97  Aligned_cols=102  Identities=16%  Similarity=0.115  Sum_probs=58.4

Q ss_pred             CEEEEEccCCChHH-HHHHHHhCCCCcEEEEEeCChHHHHHHHHH------------hhcCCCCCCCeEEEEccccccCc
Q 021008          123 TKIAFIGSGPLPLT-SIVLAINHLTTTCFDNYDIDPSANSKALSL------------VSSDPDLSTRMFFHTTDIMNVSS  189 (318)
Q Consensus       123 ~rVL~IGsGplp~t-ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~------------~~~~~gl~~ri~f~~gDa~~l~~  189 (318)
                      +||..||+|-+|++ |.++|+   .|-+|+|+|+|++.++.-++-            +.. .-...+..+ ..|..+.  
T Consensus         1 MkI~ViGlG~vGl~~a~~la~---~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~-~~~~~~~~~-~~~~~~~--   73 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSA---RGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQ-GRQTGRLSG-TTDFKKA--   73 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHH-HHHTTCEEE-ESCHHHH--
T ss_pred             CEEEEECCCHhHHHHHHHHHh---CCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhh-hhccccccc-CCCHHHH--
Confidence            58999999999877 456665   488999999999877654311            100 001122333 2222221  


Q ss_pred             CCCCccEEEeccccCC------ChhHHHHHHHHHH---HhccCCeEEEEEcC
Q 021008          190 ALKDYEVVFLAALVGM------DKDEKIRVIDHLA---KYMAPGALLMLRSA  232 (318)
Q Consensus       190 ~l~~fD~V~~aalvgm------~~~~k~~vl~~l~---r~LkpGg~lv~r~~  232 (318)
                       ....|++|+.--.+.      +...-..+++.+.   +..+++..+++++.
T Consensus        74 -i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~ST  124 (202)
T d1mv8a2          74 -VLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST  124 (202)
T ss_dssp             -HHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC
T ss_pred             -HhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccc
Confidence             225688876542211      1122234444444   45568899999883

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=95.98  E-value=0.013  Score=54.49  Aligned_cols=122  Identities=11%  Similarity=0.084  Sum_probs=79.2

Q ss_pred             hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCC------------CCcEEEEEeCChHHHHHHHHHhhcCCCC
Q 021008          106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHL------------TTTCFDNYDIDPSANSKALSLVSSDPDL  173 (318)
Q Consensus       106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~------------~ga~V~gvDid~~ai~~Ar~~~~~~~gl  173 (318)
                      ++++-...+.   +..+.+|+|-.||.+++-.-. .++..            ....+.|+|+++.+...|+-...- .|.
T Consensus       150 Iv~~mv~ll~---~~~~~~IlDPacGsG~fL~~a-~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l-~g~  224 (425)
T d2okca1         150 LIQAMVDCIN---PQMGETVCDPACGTGGFLLTA-YDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-HGI  224 (425)
T ss_dssp             HHHHHHHHHC---CCTTCCEEETTCTTCHHHHHH-HHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-TTC
T ss_pred             hhHhhheecc---CcccceeeccccccCccHHHH-HHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh-cCC
Confidence            4555444442   356799999999987776433 22110            023599999999999999876654 344


Q ss_pred             C-CCeEEEEccccccCcCCCCccEEEeccccCCC----------------hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008          174 S-TRMFFHTTDIMNVSSALKDYEVVFLAALVGMD----------------KDEKIRVIDHLAKYMAPGALLMLRSAH  233 (318)
Q Consensus       174 ~-~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~----------------~~~k~~vl~~l~r~LkpGg~lv~r~~~  233 (318)
                      . ....+..+|..+-. ....||+|+.-=-.+..                ......++.++.+.|+|||++++--++
T Consensus       225 ~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~  300 (425)
T d2okca1         225 GTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  300 (425)
T ss_dssp             CSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence            3 45677888887643 33489998843211110                112346999999999999987765543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.021  Score=45.24  Aligned_cols=102  Identities=14%  Similarity=0.102  Sum_probs=67.4

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEE
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVV  197 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V  197 (318)
                      ..+|+.+|.|..|...+..-..  .|..|+.||.|++......+....     ..+.++.||+.+-.    ......|.|
T Consensus         3 knHiII~G~g~~g~~l~~~L~~--~~~~v~vId~d~~~~~~~~~~~~~-----~~~~vi~Gd~~d~~~L~~a~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQ--RGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--cCCCEEEEeccchhHHHHHHHhhc-----CCcEEEEccCcchHHHHHhccccCCEE
Confidence            3579999999766554433333  488999999999754333222222     56899999998731    234467877


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ++..    +...+--.+...++.+.|...++++..+.
T Consensus        76 i~~~----~~d~~n~~~~~~~r~~~~~~~iia~~~~~  108 (153)
T d1id1a_          76 LALS----DNDADNAFVVLSAKDMSSDVKTVLAVSDS  108 (153)
T ss_dssp             EECS----SCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred             EEcc----ccHHHHHHHHHHHHHhCCCCceEEEEcCH
Confidence            7554    22344555566778889999888887443

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.0041  Score=51.52  Aligned_cols=94  Identities=11%  Similarity=0.047  Sum_probs=57.7

Q ss_pred             CEEEEEc-cCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CCCCccEEE
Q 021008          123 TKIAFIG-SGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--ALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IG-sGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l~~fD~V~  198 (318)
                      +.||.-| +|+.|..++.+|+.+  |+ .|++++-+++.....   ... .|...-+.+...|..+...  ....+|+||
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~--Ga~~vi~~~~~~e~~~~l---~~~-~gad~vi~~~~~~~~~~~~~~~~~GvDvv~  105 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLL--GCSRVVGICGTQEKCLFL---TSE-LGFDAAVNYKTGNVAEQLREACPGGVDVYF  105 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHT--TCSEEEEEESSHHHHHHH---HHH-SCCSEEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHc--CCcceecccchHHHHhhh---hhc-ccceEEeeccchhHHHHHHHHhccCceEEE
Confidence            7799988 699999999999864  76 577777776544432   222 2322222221112221100  123699998


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                       +. +|      ...++...+.|+|||+++.-
T Consensus       106 -D~-vG------g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         106 -DN-VG------GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             -ES-SC------HHHHHHHHTTEEEEEEEEEC
T ss_pred             -ec-CC------chhHHHHhhhccccccEEEe
Confidence             43 22      23577788999999999764

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.0073  Score=54.71  Aligned_cols=59  Identities=8%  Similarity=-0.076  Sum_probs=47.0

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV  187 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l  187 (318)
                      .+..|++||.|+|.+|...+-.   .+ -+|++||+|+...+.-++++..     ++++++.+|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~---~~~~~v~~iE~D~~~~~~L~~~~~~-----~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNK---YCPRQYSLLEKRSSLYKFLNAKFEG-----SPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHH---HCCSEEEEECCCHHHHHHHHHHTTT-----SSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCCCEEEEEECCHHHHHHHHHhccC-----CCcEEEeCchhhc
Confidence            5678999999998888765543   13 3899999999998887776543     7899999999753

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.77  E-value=0.028  Score=45.04  Aligned_cols=105  Identities=14%  Similarity=0.105  Sum_probs=61.1

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH-HHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN-SKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai-~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      +||..||+|..|.+..+.........++.-+|++++.. ..+..+.........+.....+|-.++    ..-|+|++.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l----~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAAL----ADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGG----TTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHh----ccccEEEEec
Confidence            79999999988877655333222345899999999753 233333322122344566667775544    4789988776


Q ss_pred             ccC--------CCh----hHHHHHHHHHHHhc---cCCeEEEEEc
Q 021008          202 LVG--------MDK----DEKIRVIDHLAKYM---APGALLMLRS  231 (318)
Q Consensus       202 lvg--------m~~----~~k~~vl~~l~r~L---kpGg~lv~r~  231 (318)
                      -..        ++.    ..-.++++++.+.+   .|.+.+++-+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            431        110    11235566665555   4677665544

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.72  E-value=0.088  Score=41.90  Aligned_cols=80  Identities=14%  Similarity=0.104  Sum_probs=50.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH-HHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA-NSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a-i~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ..++||..||+|..|.+..+.........++.-+|++++. -..|..+.....-....+.+..+|..+    +...|+|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~----l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD----CRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG----TTTCSEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHH----hccceeEE
Confidence            5678999999998777754433322234589999999875 333444433211223456666676544    34689998


Q ss_pred             ecccc
Q 021008          199 LAALV  203 (318)
Q Consensus       199 ~aalv  203 (318)
                      +.+-.
T Consensus        80 itag~   84 (148)
T d1ldna1          80 ICAGA   84 (148)
T ss_dssp             ECCSC
T ss_pred             Eeccc
Confidence            87655

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.59  E-value=0.012  Score=48.06  Aligned_cols=99  Identities=14%  Similarity=0.154  Sum_probs=60.7

Q ss_pred             CCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          122 PTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       122 ~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      ...|-+||.|.+|... ..|++   .|.+|+++|++++.++...+.-..    ..... ......++.......|.+++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~---~G~~V~v~dr~~~~~~~l~~~~~~----~~~~~-~a~~~~~~~~~~~~~~~ii~~   73 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMND---HGFVVCAFNRTVSKVDDFLANEAK----GTKVL-GAHSLEEMVSKLKKPRRIILL   73 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSTHHHHHHHHTTTT----TSSCE-ECSSHHHHHHHBCSSCEEEEC
T ss_pred             CCcEEEEeEhHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHHhccc----ccccc-chhhhhhhhhhhcccceEEEe
Confidence            3579999999887663 23333   488999999999877765443221    11111 111222222223357777765


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ..   +.+.-..+++.+...++||.+++--+
T Consensus        74 ~~---~~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          74 VK---AGQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             SC---TTHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             cC---chHHHHHHHHHHHhccccCcEEEecC
Confidence            32   23555678899999999998776544

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.03  Score=46.16  Aligned_cols=93  Identities=18%  Similarity=0.092  Sum_probs=62.7

Q ss_pred             CCCEEEEE-ccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--CCccEE
Q 021008          121 FPTKIAFI-GSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--KDYEVV  197 (318)
Q Consensus       121 ~~~rVL~I-GsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--~~fD~V  197 (318)
                      ++.+||.. |+|..|..++.+|+.+  |++|+++..+++..+.++++-..        .++.-+-.+....+  ..+|.|
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~lGad--------~vi~~~~~~~~~~l~~~~~~~v  100 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKSLGAS--------RVLPRDEFAESRPLEKQVWAGA  100 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTEE--------EEEEGGGSSSCCSSCCCCEEEE
T ss_pred             CCCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHhhccc--------cccccccHHHHHHHHhhcCCee
Confidence            44466654 5577899999999974  99999999999998888765332        12222222222222  257877


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      + +. |+      ...+....+.|++||+++.-.
T Consensus       101 v-D~-Vg------g~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2         101 I-DT-VG------DKVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             E-ES-SC------HHHHHHHHHTEEEEEEEEECC
T ss_pred             E-EE-cc------hHHHHHHHHHhccccceEeec
Confidence            5 54 33      235778889999999998865

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.50  E-value=0.065  Score=42.74  Aligned_cols=79  Identities=15%  Similarity=0.174  Sum_probs=49.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH-HHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN-SKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai-~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ...+||..||+|..|.+..+.........+++-+|++++.. ..|..+... ........+..+|-.++    ...|+|+
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a-~~~~~~~~~~~~d~~~~----~~adivv   77 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA-QAFTAPKKIYSGEYSDC----KDADLVV   77 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG-GGGSCCCEEEECCGGGG----TTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcc-ccccCCceEeeccHHHh----ccccEEE
Confidence            34679999999988877543333222246899999999642 233333322 12233456667775543    4789998


Q ss_pred             ecccc
Q 021008          199 LAALV  203 (318)
Q Consensus       199 ~aalv  203 (318)
                      +.+-.
T Consensus        78 itag~   82 (146)
T d1ez4a1          78 ITAGA   82 (146)
T ss_dssp             ECCCC
T ss_pred             Eeccc
Confidence            87644

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.48  E-value=0.019  Score=46.07  Aligned_cols=90  Identities=17%  Similarity=0.188  Sum_probs=58.4

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      +||.+||.|.+|.... .|++   .|..|+++|++++..+..++...         . ...+..++   ....|+|++.-
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~---~G~~V~~~d~~~~~~~~~~~~~~---------~-~~~~~~e~---~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLK---AGYSLVVSDRNPEAIADVIAAGA---------E-TASTAKAI---AEQCDVIITML   64 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHTTC---------E-ECSSHHHH---HHHCSEEEECC
T ss_pred             CEEEEEehhHHHHHHHHHHHH---CCCeEEEEeCCcchhHHHHHhhh---------h-hcccHHHH---HhCCCeEEEEc
Confidence            4899999999987743 3444   48899999999988776654221         1 12222232   22689988753


Q ss_pred             ccCCChhHHHHHH---HHHHHhccCCeEEEEEc
Q 021008          202 LVGMDKDEKIRVI---DHLAKYMAPGALLMLRS  231 (318)
Q Consensus       202 lvgm~~~~k~~vl---~~l~r~LkpGg~lv~r~  231 (318)
                      -   +...-..++   ..+...++||..++-.+
T Consensus        65 ~---~~~~v~~v~~~~~~~~~~~~~g~iiid~s   94 (161)
T d1vpda2          65 P---NSPHVKEVALGENGIIEGAKPGTVLIDMS   94 (161)
T ss_dssp             S---SHHHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             C---CHHHHHHHHhCCcchhhccCCCCEEEECC
Confidence            1   334445555   45788899988776554

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.42  E-value=0.035  Score=45.18  Aligned_cols=93  Identities=8%  Similarity=0.094  Sum_probs=59.1

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEE-eCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNY-DIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gv-Did~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      ||..||||..|-.-+-..+. .++.+|++| |.|++   .++++.++ .+.....++ ..|..++.. ..+.|+|+++. 
T Consensus         3 ki~iIG~G~~g~~~~~~l~~-~~~~~i~ai~d~~~~---~~~~~~~~-~~~~~~~~~-~~~~~~ll~-~~~iD~v~I~t-   74 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHL-APNATISGVASRSLE---KAKAFATA-NNYPESTKI-HGSYESLLE-DPEIDALYVPL-   74 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHH-CTTEEEEEEECSSHH---HHHHHHHH-TTCCTTCEE-ESSHHHHHH-CTTCCEEEECC-
T ss_pred             EEEEEcCCHHHHHHHHHHHh-CCCCEEEEEEeCCcc---ccccchhc-cccccceee-cCcHHHhhh-ccccceeeecc-
Confidence            89999999877654433333 479999986 88885   44455555 566555554 356666543 34799999876 


Q ss_pred             cCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          203 VGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                         +.....++   +...|+.|=-+++.
T Consensus        75 ---p~~~h~~~---~~~~l~~g~~v~~E   96 (184)
T d1ydwa1          75 ---PTSLHVEW---AIKAAEKGKHILLE   96 (184)
T ss_dssp             ---CGGGHHHH---HHHHHTTTCEEEEC
T ss_pred             ---cchhhcch---hhhhhhccceeecc
Confidence               33344444   45567777666554

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.36  E-value=0.089  Score=41.50  Aligned_cols=75  Identities=24%  Similarity=0.297  Sum_probs=48.1

Q ss_pred             CEEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHH-HHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          123 TKIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANS-KALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~-~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      .||..||+|..|.+..+ ++.+ ....++.-+|++++..+ .+..+... .....+..+..+|..++    ...|+|++.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~-~l~~el~L~Di~~~~~~g~~~Dl~~~-~~~~~~~~~~~~~~~~~----~~adivvit   74 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMK-GFAREMVLIDVDKKRAEGDALDLIHG-TPFTRRANIYAGDYADL----KGSDVVIVA   74 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSHHHHHHHHHHHHHH-GGGSCCCEEEECCGGGG----TTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCCEEEEEecccccccchhcccccc-ccccccccccCCcHHHh----cCCCEEEEe
Confidence            48999999987877544 3333 23568999999986543 23333332 23345667777665443    478999887


Q ss_pred             ccc
Q 021008          201 ALV  203 (318)
Q Consensus       201 alv  203 (318)
                      +-.
T Consensus        75 ag~   77 (140)
T d1a5za1          75 AGV   77 (140)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            755

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.10  E-value=0.075  Score=41.86  Aligned_cols=45  Identities=22%  Similarity=0.194  Sum_probs=35.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEE--eCChHHHHHHHHH
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNY--DIDPSANSKALSL  166 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gv--Did~~ai~~Ar~~  166 (318)
                      -.++|||.||+|+.+...+....+  .|++||-|  |++++...++.+.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~--~GA~VtVvap~~~~~l~~~~~~~   57 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMP--TGCKLTLVSPDLHKSIIPKFGKF   57 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGG--GTCEEEEEEEEECTTHHHHHCGG
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCCCHHHHHHHHhc
Confidence            578999999999888877666554  48998888  6788887777554

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.05  E-value=0.042  Score=48.21  Aligned_cols=108  Identities=6%  Similarity=0.011  Sum_probs=63.1

Q ss_pred             cccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc-cccCcCCCCcc
Q 021008          117 HCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI-MNVSSALKDYE  195 (318)
Q Consensus       117 ~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa-~~l~~~l~~fD  195 (318)
                      +...+..+|+|+||||+|.|- ++|++ .+...|.|+|+=-+--+. -..... .+. +-+++...+- ..++  ...+|
T Consensus        62 ~~~~~~~~vvDlG~~pGgws~-~~a~~-~~v~~V~g~~iG~d~~e~-P~~~~~-~~~-ni~~~~~~~dv~~l~--~~~~D  134 (257)
T d2p41a1          62 NLVTPEGKVVDLGCGRGGWSY-YCGGL-KNVREVKGLTKGGPGHEE-PIPMST-YGW-NLVRLQSGVDVFFIP--PERCD  134 (257)
T ss_dssp             TSSCCCEEEEEETCTTSHHHH-HHHTS-TTEEEEEEECCCSTTSCC-CCCCCS-TTG-GGEEEECSCCTTTSC--CCCCS
T ss_pred             cCccCCCeEEEecCCCChHHH-HHHhh-cCCCceeEEEecCccccC-Cccccc-ccc-ccccchhhhhHHhcC--CCcCC
Confidence            334677899999999999985 45543 356789999983210000 000111 111 2345544332 2222  23799


Q ss_pred             EEEecccc--CC---ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          196 VVFLAALV--GM---DKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       196 ~V~~aalv--gm---~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .|+.+.--  +-   +.+.-.++++-+.+.|+|||-+++--
T Consensus       135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKV  175 (257)
T d2p41a1         135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  175 (257)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEE
Confidence            99977421  11   12334477888889999999998864

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.03  E-value=0.093  Score=41.72  Aligned_cols=78  Identities=21%  Similarity=0.200  Sum_probs=46.9

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH-HHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN-SKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai-~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      |.||..||+|..|.+..+.........++.-+|++++.. ..+..+... .......++..++-.+   +...-|+|++.
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a-~~~~~~~~i~~~~~~~---~~~daDvVVit   76 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHG-SSFYPTVSIDGSDDPE---ICRDADMVVIT   76 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHT-GGGSTTCEEEEESCGG---GGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhc-cccCCCceeecCCCHH---HhhCCcEEEEe
Confidence            679999999998888654433222356899999999753 223333322 1222334554443222   33468999887


Q ss_pred             ccc
Q 021008          201 ALV  203 (318)
Q Consensus       201 alv  203 (318)
                      +-.
T Consensus        77 aG~   79 (143)
T d1llda1          77 AGP   79 (143)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            755

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.92  E-value=0.13  Score=38.11  Aligned_cols=71  Identities=18%  Similarity=0.200  Sum_probs=46.7

Q ss_pred             CCCCEEEEEccCCChHHHH--HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSI--VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai--~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ...+||.|||.|..|++++  +|.+   .|..|+|-|.....  ..+++.+  .|    +.+..++..+.   ....|+|
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~---~G~~VsGSD~~~~~--~~~~L~~--~G----i~v~~g~~~~~---i~~~d~v   71 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLN---EGYQISGSDIADGV--VTQRLAQ--AG----AKIYIGHAEEH---IEGASVV   71 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHH---HTCEEEEEESCCSH--HHHHHHH--TT----CEEEESCCGGG---GTTCSEE
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHh---CCCEEEEEeCCCCh--hhhHHHH--CC----CeEEECCcccc---CCCCCEE
Confidence            5678999999999999984  2333   49999999997532  2233433  23    45555555432   2468987


Q ss_pred             EeccccC
Q 021008          198 FLAALVG  204 (318)
Q Consensus       198 ~~aalvg  204 (318)
                      +.++-+.
T Consensus        72 V~S~AI~   78 (96)
T d1p3da1          72 VVSSAIK   78 (96)
T ss_dssp             EECTTSC
T ss_pred             EECCCcC
Confidence            7766564

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.91  E-value=0.011  Score=48.66  Aligned_cols=79  Identities=27%  Similarity=0.333  Sum_probs=48.5

Q ss_pred             CCCEEEEEccCCChHHHHH---HHH-hCCCCcEEEEEeCChHHHHH----HHHHhhcCCCCCCCeEEEEccccccCcCCC
Q 021008          121 FPTKIAFIGSGPLPLTSIV---LAI-NHLTTTCFDNYDIDPSANSK----ALSLVSSDPDLSTRMFFHTTDIMNVSSALK  192 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~---LA~-~~~~ga~V~gvDid~~ai~~----Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~  192 (318)
                      |..||..||+|..|+|...   +++ ..+.+.+++-+|+|++..+.    .++.+.. .+.  ..++...  .|....+.
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~-~~~--~~~i~~~--td~~eaL~   75 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEE-VGA--DLKFEKT--MNLDDVII   75 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHH-TTC--CCEEEEE--SCHHHHHT
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHh-cCC--CeEEEEe--CChhhccc
Confidence            4679999999988877433   232 22345799999999986653    3333443 333  3343322  12222345


Q ss_pred             CccEEEeccccC
Q 021008          193 DYEVVFLAALVG  204 (318)
Q Consensus       193 ~fD~V~~aalvg  204 (318)
                      ..|+|++++-++
T Consensus        76 dad~Vv~~~~~g   87 (171)
T d1obba1          76 DADFVINTAMVG   87 (171)
T ss_dssp             TCSEEEECCCTT
T ss_pred             CCCeEeeecccc
Confidence            799999887664

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.84  E-value=0.058  Score=41.37  Aligned_cols=93  Identities=12%  Similarity=0.074  Sum_probs=64.5

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEEE
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V~  198 (318)
                      ++|+.+|.|..|   ..+++. +.+..|+.||.|++..+..+    .     ..+.++.||+.+-.    ....+.+.++
T Consensus         1 kHivI~G~g~~g---~~l~~~-L~~~~i~vi~~d~~~~~~~~----~-----~~~~~i~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWSEST---LECLRE-LRGSEVFVLAEDENVRKKVL----R-----SGANFVHGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCCHHH---HHHHHT-SCGGGEEEEESCTTHHHHHH----H-----TTCEEEESCTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCCHHH---HHHHHH-HcCCCCEEEEcchHHHHHHH----h-----cCccccccccCCHHHHHHhhhhcCcEEE
Confidence            468889998543   345655 46888999999998877653    2     34688999998631    2344677777


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      +..    +.....-.+....|.+.|...++++..
T Consensus        68 ~~~----~~d~~n~~~~~~~r~~~~~~~iia~~~   97 (129)
T d2fy8a1          68 VNL----ESDSETIHCILGIRKIDESVRIIAEAE   97 (129)
T ss_dssp             ECC----SSHHHHHHHHHHHHHHCSSSCEEEECS
T ss_pred             Eec----cchhhhHHHHHHHHHHCCCceEEEEEc
Confidence            544    234455566677788999988888763

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.22  Score=40.22  Aligned_cols=107  Identities=16%  Similarity=0.209  Sum_probs=64.1

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH-HHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN-SKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai-~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      +..||..||+|..|.+..++........++.-+|++++.. ..|..+.....-.+.......+|..+    ....|+|++
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~----~~~adivvi   93 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNV----SANSKLVII   93 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGG----GTTEEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhh----hccccEEEE
Confidence            3468999999999988766554432345899999997542 34445544312233444455555443    347899887


Q ss_pred             cccc----CCCh----hHHHHHHHHHHHhc---cCCeEEEEEc
Q 021008          200 AALV----GMDK----DEKIRVIDHLAKYM---APGALLMLRS  231 (318)
Q Consensus       200 aalv----gm~~----~~k~~vl~~l~r~L---kpGg~lv~r~  231 (318)
                      .+-.    +++.    ..-.++++++.+.+   .|.|++++-+
T Consensus        94 tag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt  136 (159)
T d2ldxa1          94 TAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT  136 (159)
T ss_dssp             CCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence            7755    3321    34455666655443   4666665544

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=94.64  E-value=0.038  Score=46.80  Aligned_cols=98  Identities=9%  Similarity=0.153  Sum_probs=56.3

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEE-eCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNY-DIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gv-Did~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .+-||..||||..+..-..-+-+..++.+|++| |++++..+   +..++ .|+...-.+...|..++. +..+.|+|++
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~---~~~~~-~~i~~~~~~~~~d~~ell-~~~~iD~V~I  106 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAK---IVAAE-YGVDPRKIYDYSNFDKIA-KDPKIDAVYI  106 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHH---HHHHH-TTCCGGGEECSSSGGGGG-GCTTCCEEEE
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHH---HHHHh-hccccccccccCchhhhc-ccccceeeee
Confidence            445999999996554322212133478888854 99985544   44444 555433333346666653 3347999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +.-    ...-.++   +.+.|+-|=-+++.
T Consensus       107 ~tp----~~~H~~~---~~~al~~gk~v~~E  130 (221)
T d1h6da1         107 ILP----NSLHAEF---AIRAFKAGKHVMCE  130 (221)
T ss_dssp             CSC----GGGHHHH---HHHHHHTTCEEEEC
T ss_pred             ccc----hhhhhhH---HHHhhhcchhhhcC
Confidence            762    2233333   34555666555554

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.024  Score=49.22  Aligned_cols=106  Identities=15%  Similarity=0.092  Sum_probs=70.8

Q ss_pred             CCCEEEEE--ccCCChHH-HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---------
Q 021008          121 FPTKIAFI--GSGPLPLT-SIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---------  188 (318)
Q Consensus       121 ~~~rVL~I--GsGplp~t-ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---------  188 (318)
                      .++||+.|  |++.+|.. +..||++  .|++|+..+++++..+.+.+.++. .  +.++.++..|+.+..         
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~--~g~~Vi~~~r~~~~~~~~~~~l~~-~--~~~~~~~~~Dvs~~~sv~~~~~~~   75 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRL--FSGDVVLTARDVTRGQAAVQQLQA-E--GLSPRFHQLDIDDLQSIRALRDFL   75 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHH--SSSEEEEEESSHHHHHHHHHHHHH-T--TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHh-c--CCcEEEEEEecCCHHHHHHHHHHH
Confidence            47899888  33334443 3446653  389999999999998888777766 3  457899999998732         


Q ss_pred             -cCCCCccEEEeccccCC-------ChhHHH-----------HHHHHHHHhccCCeEEEEEc
Q 021008          189 -SALKDYEVVFLAALVGM-------DKDEKI-----------RVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       189 -~~l~~fD~V~~aalvgm-------~~~~k~-----------~vl~~l~r~LkpGg~lv~r~  231 (318)
                       ...+..|+++..|-+..       +.++..           .+.+.+.+.|+++|+++.-+
T Consensus        76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence             23357898886654411       111222           34566788899999887655

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=94.44  E-value=0.25  Score=39.04  Aligned_cols=76  Identities=13%  Similarity=0.065  Sum_probs=48.7

Q ss_pred             CEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChH---HHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          123 TKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPS---ANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~---ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .||..|| +|..|.+..++...-....++.-+|++..   +-..+..+... ..+..++++..+|-.++    ...|+|+
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~-~~~~~~~~i~~~~~~~~----~~aDiVv   75 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG-IAYDSNTRVRQGGYEDT----AGSDVVV   75 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHH-HTTTCCCEEEECCGGGG----TTCSEEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhc-ccccCCceEeeCCHHHh----hhcCEEE
Confidence            4899999 79888886555543223457999998632   33345555443 23456677777765444    4789988


Q ss_pred             ecccc
Q 021008          199 LAALV  203 (318)
Q Consensus       199 ~aalv  203 (318)
                      +.+-.
T Consensus        76 itaG~   80 (142)
T d1o6za1          76 ITAGI   80 (142)
T ss_dssp             ECCCC
T ss_pred             Eeccc
Confidence            77655

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.32  E-value=0.18  Score=40.03  Aligned_cols=78  Identities=15%  Similarity=0.225  Sum_probs=45.3

Q ss_pred             CEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHH---HHHHHHhhcCCCCCC--CeEEEEccccccCcCCCCccE
Q 021008          123 TKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSAN---SKALSLVSSDPDLST--RMFFHTTDIMNVSSALKDYEV  196 (318)
Q Consensus       123 ~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai---~~Ar~~~~~~~gl~~--ri~f~~gDa~~l~~~l~~fD~  196 (318)
                      .||..|| +|..|.+..++......-.++.-+|+++...   ..|..+.........  ++.+...+  +. .+++..|+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~--d~-~~l~~aDv   77 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDE--NL-RIIDESDV   77 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETT--CG-GGGTTCSE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcc--hH-HHhccceE
Confidence            4899999 5998888766554321235899999997542   234444432122233  33333332  21 24457999


Q ss_pred             EEecccc
Q 021008          197 VFLAALV  203 (318)
Q Consensus       197 V~~aalv  203 (318)
                      |++.+-.
T Consensus        78 VVitAG~   84 (145)
T d1hyea1          78 VIITSGV   84 (145)
T ss_dssp             EEECCSC
T ss_pred             EEEeccc
Confidence            9887655

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=94.15  E-value=0.24  Score=43.79  Aligned_cols=107  Identities=15%  Similarity=0.165  Sum_probs=73.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC--CCCeEEEEccccc-cCcCC--CCc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL--STRMFFHTTDIMN-VSSAL--KDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl--~~ri~f~~gDa~~-l~~~l--~~f  194 (318)
                      ..++.|+.+||| +-..+..+.  ..++.++.-||. |+.++.-++++++ .|.  ..+..++..|..+ +...+  ..|
T Consensus        88 ~g~~qvV~LGaG-lDTr~~Rl~--~~~~~~~~EvD~-p~vi~~K~~~l~~-~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~  162 (297)
T d2uyoa1          88 DGIRQFVILASG-LDSRAYRLD--WPTGTTVYEIDQ-PKVLAYKSTTLAE-HGVTPTADRREVPIDLRQDWPPALRSAGF  162 (297)
T ss_dssp             TTCCEEEEETCT-TCCHHHHSC--CCTTCEEEEEEC-HHHHHHHHHHHHH-TTCCCSSEEEEEECCTTSCHHHHHHHTTC
T ss_pred             hCCCeEEEeCcc-cCChhhhcC--CCcCceEEEcCC-hHHHHHHHHHHHh-cCCCCCceEEEecccccchHHHHHHhcCC
Confidence            556889999998 665555442  235778887774 8888888888776 443  4566778877764 11111  245


Q ss_pred             c----EEEec-ccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          195 E----VVFLA-ALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       195 D----~V~~a-alv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      |    .+|+. .++ =++.+.-.++++.++....||+.|++..
T Consensus       163 d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~  205 (297)
T d2uyoa1         163 DPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET  205 (297)
T ss_dssp             CTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            5    45543 333 2377888999999999999999999875

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.14  E-value=0.095  Score=38.45  Aligned_cols=70  Identities=16%  Similarity=0.192  Sum_probs=43.9

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      .||-|||-|..|++++...-. ..|..|+|-|+.+.....  ++ ++ .|    +++..+.-.   ..+.+.|+|+.++-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~-~~G~~VsGSD~~~~~~t~--~L-~~-~G----i~i~~gh~~---~~i~~~d~vV~SsA   69 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEF-SNGNDVYGSNIEETERTA--YL-RK-LG----IPIFVPHSA---DNWYDPDLVIKTPA   69 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEECSSCCHHHH--HH-HH-TT----CCEESSCCT---TSCCCCSEEEECTT
T ss_pred             cEEEEEeECHHHHHHHHHHHH-hCCCeEEEEeCCCChhHH--HH-HH-CC----CeEEeeecc---cccCCCCEEEEecC
Confidence            689999999999998522211 259999999999744333  34 33 33    344443222   22346898777665


Q ss_pred             cC
Q 021008          203 VG  204 (318)
Q Consensus       203 vg  204 (318)
                      +.
T Consensus        70 I~   71 (89)
T d1j6ua1          70 VR   71 (89)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.96  E-value=0.035  Score=46.85  Aligned_cols=36  Identities=11%  Similarity=0.214  Sum_probs=29.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP  157 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~  157 (318)
                      ..|+||+.||+|+.|+++-+..++  .|.+|+-+|-++
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~--~G~~V~vlE~~~   63 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASE   63 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            678999999999999988665544  388999998764

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.93  E-value=0.13  Score=41.42  Aligned_cols=77  Identities=21%  Similarity=0.161  Sum_probs=47.9

Q ss_pred             CEEEEEccCCChHHHHH--HHHhC--CCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          123 TKIAFIGSGPLPLTSIV--LAINH--LTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~--LA~~~--~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .||..||+|..|.+...  +++..  ++..++.-+|+|++..+.+..+.........++.....+-    .++.+-|+|+
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~----~~l~~aDvVV   76 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFE----GAVVDAKYVI   76 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHH----HHHTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcc----cccCCCCEEE
Confidence            48999999977655443  23221  2357999999999988776655443222334444322222    2345789999


Q ss_pred             ecccc
Q 021008          199 LAALV  203 (318)
Q Consensus       199 ~aalv  203 (318)
                      +++.+
T Consensus        77 ita~~   81 (162)
T d1up7a1          77 FQFRP   81 (162)
T ss_dssp             ECCCT
T ss_pred             Eeccc
Confidence            98865

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.80  E-value=0.14  Score=40.20  Aligned_cols=77  Identities=18%  Similarity=0.172  Sum_probs=45.0

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHH-HHHHhhcCCCCCCCeEEE-EccccccCcCCCCccEEEec
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSK-ALSLVSSDPDLSTRMFFH-TTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~-Ar~~~~~~~gl~~ri~f~-~gDa~~l~~~l~~fD~V~~a  200 (318)
                      .||..||.|..|.+............++.-+|++++..+. +..+.....-...+.++. ++|-.+    +...|+|++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~----~~dadvvvit   76 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD----TANSDIVIIT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG----GTTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHH----hcCCeEEEEE
Confidence            4899999998888754444332234689999999875442 222222101112344544 344333    3578988887


Q ss_pred             ccc
Q 021008          201 ALV  203 (318)
Q Consensus       201 alv  203 (318)
                      +-.
T Consensus        77 ag~   79 (142)
T d1guza1          77 AGL   79 (142)
T ss_dssp             CSC
T ss_pred             Eec
Confidence            644

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.65  E-value=0.09  Score=42.92  Aligned_cols=77  Identities=19%  Similarity=0.191  Sum_probs=46.3

Q ss_pred             CCEEEEEccCCChHHHH--HHHHhC--CCCcEEEEEeCChHHHHHH----HHHhhcCCCCCCCeEEEEccccccCcCCCC
Q 021008          122 PTKIAFIGSGPLPLTSI--VLAINH--LTTTCFDNYDIDPSANSKA----LSLVSSDPDLSTRMFFHTTDIMNVSSALKD  193 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai--~LA~~~--~~ga~V~gvDid~~ai~~A----r~~~~~~~gl~~ri~f~~gDa~~l~~~l~~  193 (318)
                      ..||..||+|..+.+.+  .+.++.  +.+.+++-+|+|++..+..    +..... .+...++.. +.|-.+   .++.
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~d~~e---al~~   77 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIRE-KAPDIEFAA-TTDPEE---AFTD   77 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHH-HCTTSEEEE-ESCHHH---HHSS
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHH-hCCCcceEe-cCChhh---ccCC
Confidence            45899999998765433  222222  1246899999999886532    333333 344334443 334332   2347


Q ss_pred             ccEEEecccc
Q 021008          194 YEVVFLAALV  203 (318)
Q Consensus       194 fD~V~~aalv  203 (318)
                      .|+|++++.+
T Consensus        78 AD~Vvitag~   87 (167)
T d1u8xx1          78 VDFVMAHIRV   87 (167)
T ss_dssp             CSEEEECCCT
T ss_pred             CCEEEECCCc
Confidence            8999998866

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.51  E-value=0.046  Score=41.49  Aligned_cols=48  Identities=13%  Similarity=0.290  Sum_probs=38.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeC--------ChHHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDI--------DPSANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDi--------d~~ai~~Ar~~~~~  169 (318)
                      .-|+||+.||+|+.|+......++  .|.+||-++.        |+++.++.++.+++
T Consensus        19 ~~p~~vvIiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~   74 (116)
T d1gesa2          19 ALPERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDAPLPSFDPMISETLVEVMNA   74 (116)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH
T ss_pred             hCCCEEEEECCChhhHHHHHHhhc--cccEEEEEeecchhhhhcchhhHHHHHHHHHH
Confidence            568999999999988887666665  4999999997        55666776777766

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.46  E-value=0.23  Score=39.17  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=46.1

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH-HHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN-SKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai-~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      .||..||+|..|.+..+.........++.-+|++++.. ..+..+... ...........+|-.+    ...-|+|++.+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~-~~~~~~~~~~~~~~~~----~~~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG-LPFMGQMSLYAGDYSD----VKDCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTS-CCCTTCEEEC--CGGG----GTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccC-cccCCCeeEeeCcHHH----hCCCceEEEec
Confidence            48999999987877655444332345899999999742 444455443 3344456666555433    45789998887


Q ss_pred             cc
Q 021008          202 LV  203 (318)
Q Consensus       202 lv  203 (318)
                      -.
T Consensus        77 g~   78 (142)
T d1y6ja1          77 GA   78 (142)
T ss_dssp             CC
T ss_pred             cc
Confidence            65

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.40  E-value=0.089  Score=42.36  Aligned_cols=101  Identities=12%  Similarity=0.127  Sum_probs=57.9

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      ++|-+||.|.+|.... .|++   .|..|+++|++++..+...+.-.. ......... ..+..++.......+.++...
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~---~G~~V~~~dr~~~~~~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAE---KGFKVAVFNRTYSKSEEFMKANAS-APFAGNLKA-FETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHTTT-STTGGGEEE-CSCHHHHHHHBCSSCEEEECC
T ss_pred             CEEEEEeehHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHHcCCc-cccccchhh-hhhhhHHHHhcccceEEEEee
Confidence            4799999998776532 2333   488999999999776655444332 122222221 112222222222344444332


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .   +......++..+...+++|..++--+
T Consensus        77 ~---~~~~~~~~~~~~~~~~~~~~iii~~s  103 (178)
T d1pgja2          77 Q---AGAATDSTIEQLKKVFEKGDILVDTG  103 (178)
T ss_dssp             C---CSHHHHHHHHHHHHHCCTTCEEEECC
T ss_pred             c---CcchhhhhhhhhhhhccccceecccC
Confidence            1   22455677888899999998876544

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.34  E-value=0.063  Score=40.94  Aligned_cols=48  Identities=17%  Similarity=0.089  Sum_probs=38.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeC--------ChHHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDI--------DPSANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDi--------d~~ai~~Ar~~~~~  169 (318)
                      ..|+||+.||+|+.|+-.....++  .|.+||-++.        |+++.+..++.+++
T Consensus        20 ~~p~~v~IiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~   75 (117)
T d1onfa2          20 KESKKIGIVGSGYIAVELINVIKR--LGIDSYIFARGNRILRKFDESVINVLENDMKK   75 (117)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCchHHHHHHHHHHh--ccccceeeehhccccccccHHHHHHHHHHHHh
Confidence            458999999999887776555544  5999999997        67777888877776

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=93.24  E-value=0.025  Score=49.50  Aligned_cols=83  Identities=12%  Similarity=0.034  Sum_probs=59.1

Q ss_pred             cEEEEEeCChHHHHHHH---HHhhcCCCCCCCeEEEEccccccCc-----CCCCccEEEecc----ccC----CChhHHH
Q 021008          148 TCFDNYDIDPSANSKAL---SLVSSDPDLSTRMFFHTTDIMNVSS-----ALKDYEVVFLAA----LVG----MDKDEKI  211 (318)
Q Consensus       148 a~V~gvDid~~ai~~Ar---~~~~~~~gl~~ri~f~~gDa~~l~~-----~l~~fD~V~~aa----lvg----m~~~~k~  211 (318)
                      ..+.|.|+|+.+++.|+   +++.. .|+++.+.|..+|+.+...     .-..+++|++.=    =++    ...+...
T Consensus       115 ~~i~G~D~d~~ai~~A~~~r~n~~~-Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~  193 (249)
T d1o9ga_         115 SERFGKPSYLEAAQAARRLRERLTA-EGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVA  193 (249)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHH-TTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred             CCccccccCHHHHHHHHHHHHHHHH-cCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHH
Confidence            35789999999999994   57888 9999999999999976431     123567777431    011    1225677


Q ss_pred             HHHHHHHHhccCCeEEEEEc
Q 021008          212 RVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       212 ~vl~~l~r~LkpGg~lv~r~  231 (318)
                      ++...+.+.+.....+++.+
T Consensus       194 ~~~~~l~~~~p~~s~~~it~  213 (249)
T d1o9ga_         194 GLLRSLASALPAHAVIAVTD  213 (249)
T ss_dssp             HHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHccCCCCcEEEEeC
Confidence            88888999997777766644

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.22  E-value=0.059  Score=44.25  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcc-CCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc---cCcCCCCc
Q 021008          120 RFPTKIAFIGS-GPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN---VSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGs-Gplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~---l~~~l~~f  194 (318)
                      -++++|+..|+ |.+|... ..+++   .|++|+.++++++..+...+....    ..++.+...|+.+   +....++.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~---~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~i   93 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAG---EGAEVVLCGRKLDKAQAAADSVNK----RFKVNVTAAETADDASRAEAVKGA   93 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHH----HHTCCCEEEECCSHHHHHHHTTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHh---hccchhhcccchHHHHHHHHHHHh----ccchhhhhhhcccHHHHHHHhcCc
Confidence            58899999995 4344433 34444   499999999999888776655543    1344556666654   33344678


Q ss_pred             cEEEeccccCC
Q 021008          195 EVVFLAALVGM  205 (318)
Q Consensus       195 D~V~~aalvgm  205 (318)
                      |+|+..+-.++
T Consensus        94 Dilin~Ag~g~  104 (191)
T d1luaa1          94 HFVFTAGAIGL  104 (191)
T ss_dssp             SEEEECCCTTC
T ss_pred             CeeeecCcccc
Confidence            99997765544

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.19  E-value=0.035  Score=45.67  Aligned_cols=39  Identities=36%  Similarity=0.244  Sum_probs=31.3

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHH
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKAL  164 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar  164 (318)
                      +||..||.|-+|++....++   .|..|+|+|+|++.++.-+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a---~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS---LQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT---TTSEEEEECSCHHHHHHHH
T ss_pred             CEEEEECCChhHHHHHHHHH---CCCcEEEEECCHHHHHHHh
Confidence            58999999988887644443   3889999999999887654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.10  E-value=0.076  Score=40.00  Aligned_cols=56  Identities=13%  Similarity=0.037  Sum_probs=40.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH--------HHHHHHHHhhcCCCCCCCeEEEEc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS--------ANSKALSLVSSDPDLSTRMFFHTT  182 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~--------ai~~Ar~~~~~~~gl~~ri~f~~g  182 (318)
                      ..|++|+.||+|+.|+.......+  .|.+||-++..+.        +.+...+.+++     ..|+|+.+
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~-----~GI~i~~~   83 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGEILSGFEKQMAAIIKKRLKK-----KGVEVVTN   83 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHH-----TTCEEEES
T ss_pred             hcCCeEEEECCCccceeeeeeecc--cccEEEEEEecceecccccchhHHHHHHHHHh-----cCCEEEcC
Confidence            678999999999988877666555  4999999997654        55666666666     33555444

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.06  E-value=0.069  Score=40.91  Aligned_cols=48  Identities=13%  Similarity=0.249  Sum_probs=39.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh--------HHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP--------SANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~--------~ai~~Ar~~~~~  169 (318)
                      ..|+|++.||+|+.|+-...+..+  .|.+||-++..+        ++.+..++.+++
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~~--lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~   76 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIGASMDGEVAKATQKFLKK   76 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSSSSCHHHHHHHHHHHHH
T ss_pred             cCCCeEEEECCCchHHHHHHHHHh--hCcceeEEEeccccchhhhhhhHHHHHHHHHh
Confidence            578999999999988877666655  499999998755        888888888887

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.96  E-value=0.25  Score=39.14  Aligned_cols=89  Identities=20%  Similarity=0.217  Sum_probs=54.8

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      ++|.+||.|-+|..- ..|++   .|..|.++|++++..+...+.-..          ...+..+.   ....|+|++.-
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~---~g~~v~~~d~~~~~~~~~~~~~~~----------~~~~~~e~---~~~~diii~~v   65 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLK---AGYLLNVFDLVQSAVDGLVAAGAS----------AARSARDA---VQGADVVISML   65 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSSHHHHHHHHHTTCE----------ECSSHHHH---HTSCSEEEECC
T ss_pred             CEEEEEEEHHHHHHHHHHHHH---CCCeEEEEECchhhhhhhhhhhcc----------ccchhhhh---ccccCeeeecc
Confidence            489999999987653 33444   388999999999887765543221          11222222   23688887653


Q ss_pred             ccCCChhHHHHHHHH---HHHhccCCeEEEEE
Q 021008          202 LVGMDKDEKIRVIDH---LAKYMAPGALLMLR  230 (318)
Q Consensus       202 lvgm~~~~k~~vl~~---l~r~LkpGg~lv~r  230 (318)
                      .   +...-..++..   +...++||.+++--
T Consensus        66 ~---~~~~~~~v~~~~~~~~~~l~~g~iiid~   94 (162)
T d3cuma2          66 P---ASQHVEGLYLDDDGLLAHIAPGTLVLEC   94 (162)
T ss_dssp             S---CHHHHHHHHHSTTCHHHHSCTTCEEEEC
T ss_pred             c---chhhHHHHHhccccccccCCCCCEEEEC
Confidence            2   22333445433   67778888776543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.85  E-value=0.2  Score=40.01  Aligned_cols=106  Identities=16%  Similarity=0.142  Sum_probs=60.3

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH-HHHHHHhhcCCCCCCCeEEEE-ccccccCcCCCCccEEE
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN-SKALSLVSSDPDLSTRMFFHT-TDIMNVSSALKDYEVVF  198 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai-~~Ar~~~~~~~gl~~ri~f~~-gDa~~l~~~l~~fD~V~  198 (318)
                      +..||..||+|..|.+...++.... =+.+.-+|++++.. ..|..+.....-...+..+.. +|-.    ++...|+|+
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~-l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~----~~~~advvv   76 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKN-LGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYD----DLAGADVVI   76 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGG----GGTTCSEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC-CCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccccc----ccCCCcEEE
Confidence            3569999999988877655554432 25899999988543 233333221000123344433 3333    335789888


Q ss_pred             eccccC----CC---------hhHHHHHHHHHHHhcc---CCeEEEEEc
Q 021008          199 LAALVG----MD---------KDEKIRVIDHLAKYMA---PGALLMLRS  231 (318)
Q Consensus       199 ~aalvg----m~---------~~~k~~vl~~l~r~Lk---pGg~lv~r~  231 (318)
                      +.+-++    +.         ...-.+++.++.+.++   |.+++++-+
T Consensus        77 itag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt  125 (150)
T d1t2da1          77 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  125 (150)
T ss_dssp             ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             EecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            776542    11         2334556666655555   888776644

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=92.72  E-value=0.12  Score=40.40  Aligned_cols=76  Identities=20%  Similarity=0.214  Sum_probs=49.1

Q ss_pred             CCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          121 FPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       121 ~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .-+||++|| .|.+|.+-...-++  .|..|+++|+++.......                          ....|.+++
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~--~G~~V~~~d~~~~~~~~~~--------------------------~~~~~~v~~   59 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRA--SGYPISILDREDWAVAESI--------------------------LANADVVIV   59 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHT--TTCCEEEECTTCGGGHHHH--------------------------HTTCSEEEE
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHH--cCCCcEecccccccccchh--------------------------hhhcccccc
Confidence            447999999 68776653222222  4899999999875433210                          124566665


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLM  228 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv  228 (318)
                      +.    +...-..++.++...+++|..++
T Consensus        60 ~~----~~~~~~~v~~~~~~~~~~~~iii   84 (152)
T d2pv7a2          60 SV----PINLTLETIERLKPYLTENMLLA   84 (152)
T ss_dssp             CS----CGGGHHHHHHHHGGGCCTTSEEE
T ss_pred             cc----chhhheeeeecccccccCCceEE
Confidence            54    33566778888888888877654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.69  E-value=0.033  Score=44.36  Aligned_cols=88  Identities=14%  Similarity=0.190  Sum_probs=51.3

Q ss_pred             CEEEEEccCCChHHHHHHHHhC-CCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINH-LTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~-~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      +||.+||||.+|.+-   ++.+ ..+.+++..+.+++..+.   +.++ .|..    + ..|..++   .+..|+|+++-
T Consensus         1 MkIg~IG~G~mG~al---~~~l~~~~~~i~v~~r~~~~~~~---l~~~-~g~~----~-~~~~~~~---~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGVGKMASAI---IKGLKQTPHELIISGSSLERSKE---IAEQ-LALP----Y-AMSHQDL---IDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECCSHHHHHH---HHHHTTSSCEEEEECSSHHHHHH---HHHH-HTCC----B-CSSHHHH---HHTCSEEEECS
T ss_pred             CEEEEEeccHHHHHH---HHHHHhCCCeEEEEcChHHhHHh---hccc-ccee----e-echhhhh---hhccceeeeec
Confidence            489999999887653   3222 247799999999866544   3333 2221    1 1222222   23689999875


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                          .+    +.+.++.+.++++..++ .-..|
T Consensus        66 ----kp----~~~~~vl~~l~~~~~ii-s~~ag   89 (152)
T d2ahra2          66 ----KP----QLFETVLKPLHFKQPII-SMAAG   89 (152)
T ss_dssp             ----CG----GGHHHHHTTSCCCSCEE-ECCTT
T ss_pred             ----ch----HhHHHHhhhcccceeEe-ccccc
Confidence                22    34455567788876544 44444

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.61  E-value=0.5  Score=37.08  Aligned_cols=77  Identities=21%  Similarity=0.270  Sum_probs=44.9

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH-HHHHHHhhcCCCCCCCeEEE-EccccccCcCCCCccEEEec
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN-SKALSLVSSDPDLSTRMFFH-TTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai-~~Ar~~~~~~~gl~~ri~f~-~gDa~~l~~~l~~fD~V~~a  200 (318)
                      .||..||+|..|.+..+......--.++.-+|++++.. ..|..+......+....++. .+|..    ++...|+|++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~----~~~~adiVvit   76 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYS----LLKGSEIIVVT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGG----GGTTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHH----HhccccEEEEe
Confidence            48999999988777654333211234799999999763 22333322211233444444 34543    34578999987


Q ss_pred             ccc
Q 021008          201 ALV  203 (318)
Q Consensus       201 alv  203 (318)
                      +-.
T Consensus        77 ag~   79 (142)
T d1ojua1          77 AGL   79 (142)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            755

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.55  E-value=0.027  Score=45.16  Aligned_cols=37  Identities=16%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHH
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSA  159 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~a  159 (318)
                      .++||+.||+||.|+++...+.++  |.+ |+-+|.++..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~--G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARL--GYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHC--CCCeEEEEEecCcc
Confidence            478999999999999987766654  774 9999987654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.48  E-value=0.041  Score=42.85  Aligned_cols=37  Identities=11%  Similarity=-0.005  Sum_probs=30.3

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP  157 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~  157 (318)
                      .++||+.||+|+.|+++..-.++..++.+||-||.++
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4789999999999988765555555778999999776

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=92.48  E-value=0.095  Score=49.89  Aligned_cols=114  Identities=11%  Similarity=0.120  Sum_probs=68.7

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHh---CCC--------------CcEEEEEeCChHHHHHHHHHhhcCCCCCCC----e
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAIN---HLT--------------TTCFDNYDIDPSANSKALSLVSSDPDLSTR----M  177 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~---~~~--------------ga~V~gvDid~~ai~~Ar~~~~~~~gl~~r----i  177 (318)
                      +.++.+|+|-.||.+++-.-. .+.   +..              ...+.|+|+++.+...|+-...- .|....    -
T Consensus       162 ~~~~~~i~DPacGsG~fL~~a-~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l-~~~~~~i~~~~  239 (524)
T d2ar0a1         162 PQPREVVQDPAAGTAGFLIEA-DRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL-HDIEGNLDHGG  239 (524)
T ss_dssp             CCTTCCEEETTCTTTHHHHHH-HHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT-TTCCCBGGGTB
T ss_pred             CccchhhcchhhhcchhhHHH-HHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh-hcccccccccc
Confidence            356789999999987775422 221   101              12589999999999999866553 333221    2


Q ss_pred             EEEEccccccC-cCCCCccEEEeccccCC-------------ChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          178 FFHTTDIMNVS-SALKDYEVVFLAALVGM-------------DKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       178 ~f~~gDa~~l~-~~l~~fD~V~~aalvgm-------------~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      .+..++...-. .....||+|+.-=-.+.             .......++.++.+.|+|||++++--++|
T Consensus       240 ~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~  310 (524)
T d2ar0a1         240 AIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  310 (524)
T ss_dssp             SEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             hhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence            33344443211 12347999884321110             01123459999999999999887765444

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.44  E-value=0.12  Score=40.43  Aligned_cols=43  Identities=12%  Similarity=0.092  Sum_probs=31.1

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS  169 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~  169 (318)
                      .++|+.||+|-+|.+.......  .|..|+.+|+|.+   .|+++...
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~--~g~~V~v~dr~~~---~a~~l~~~   44 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTD--SGIKVTVACRTLE---SAKKLSAG   44 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHT--TTCEEEEEESCHH---HHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECChH---HHHHHHhc
Confidence            5899999999887664332222  4889999999996   55555554

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.1  Score=39.91  Aligned_cols=48  Identities=6%  Similarity=0.075  Sum_probs=37.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCC--------hHHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDID--------PSANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid--------~~ai~~Ar~~~~~  169 (318)
                      ..|+||+.||+|+.|+-.....++  .|.+||-++.+        ++..+..++.+++
T Consensus        20 ~~pk~vvIvGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~   75 (125)
T d3grsa2          20 ELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEELEN   75 (125)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCccHHHHHHHHhc--CCcEEEEEeeccccccchhhHHHHHHHHHHHH
Confidence            567999999999888876666655  49999999984        6677777777776

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.15  E-value=0.25  Score=42.11  Aligned_cols=72  Identities=15%  Similarity=0.233  Sum_probs=49.5

Q ss_pred             CEEEEE-ccCCChHH---HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----------
Q 021008          123 TKIAFI-GSGPLPLT---SIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----------  188 (318)
Q Consensus       123 ~rVL~I-GsGplp~t---ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----------  188 (318)
                      +||+.| |++ .|+-   +..||+   .|++|...|++++.++...+.+.+   .+.++.++.+|+.+..          
T Consensus         1 KKValITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~i~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~   73 (255)
T d1gega_           1 KKVALVTGAG-QGIGKAIALRLVK---DGFAVAIADYNDATAKAVASEINQ---AGGHAVAVKVDVSDRDQVFAAVEQAR   73 (255)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEcCCc-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            466444 665 3433   234444   499999999999998877776666   3467999999998721          


Q ss_pred             cCCCCccEEEecc
Q 021008          189 SALKDYEVVFLAA  201 (318)
Q Consensus       189 ~~l~~fD~V~~aa  201 (318)
                      ...+..|+++..|
T Consensus        74 ~~~g~iDilVnnA   86 (255)
T d1gega_          74 KTLGGFDVIVNNA   86 (255)
T ss_dssp             HHTTCCCEEEECC
T ss_pred             HHhCCccEEEecc
Confidence            2346789877544

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=91.90  E-value=0.24  Score=38.90  Aligned_cols=103  Identities=20%  Similarity=0.251  Sum_probs=55.4

Q ss_pred             CEEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHH-HHHHhhcCCCCCCCeEEE-EccccccCcCCCCccEEEe
Q 021008          123 TKIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSK-ALSLVSSDPDLSTRMFFH-TTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~-Ar~~~~~~~gl~~ri~f~-~gDa~~l~~~l~~fD~V~~  199 (318)
                      +||..||+|..|.+..+ ++.+  .=+.+..+|++++..+- +..+.....-...+.++. ++|-.++    ..-|+|++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~--~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~----~~advvvi   75 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAK--ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADT----ANSDVIVV   75 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGG----TTCSEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHh----cCCCEEEE
Confidence            58999999998877543 3433  23589999999875332 333322100012344443 4554443    46898887


Q ss_pred             cccc----CCCh----hHHHHHHHHHHHhcc---CCeEEEEEc
Q 021008          200 AALV----GMDK----DEKIRVIDHLAKYMA---PGALLMLRS  231 (318)
Q Consensus       200 aalv----gm~~----~~k~~vl~~l~r~Lk---pGg~lv~r~  231 (318)
                      .+-.    +++.    ..-.++++++...++   |.|.+++-+
T Consensus        76 tag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt  118 (142)
T d1uxja1          76 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  118 (142)
T ss_dssp             CCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred             eeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence            7644    3321    222344455544443   466665533

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=91.90  E-value=0.15  Score=40.49  Aligned_cols=90  Identities=18%  Similarity=0.203  Sum_probs=51.9

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      .||..||||..|-.. +-.. +..++..+..+|.+++..+...   .. .+...    ...|..++..  .+.|+|+++.
T Consensus         2 irvgiiG~G~~~~~~~~~~l-~~~~~~~~~~~d~~~~~~~~~~---~~-~~~~~----~~~~~~~ll~--~~iD~V~I~t   70 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVL-AQWPDIELVLCTRNPKVLGTLA---TR-YRVSA----TCTDYRDVLQ--YGVDAVMIHA   70 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHH-TTSTTEEEEEECSCHHHHHHHH---HH-TTCCC----CCSSTTGGGG--GCCSEEEECS
T ss_pred             eEEEEEcCCHHHHHHHHHHH-HhCCCcEEEEEECCHHHHHHHH---Hh-ccccc----ccccHHHhcc--cccceecccc
Confidence            389999999654332 2122 2247889999999996655443   33 33221    2245555532  2689999876


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                          +...-.++.   ...++.|=-+++.
T Consensus        71 ----p~~~H~~~~---~~al~~gk~V~~E   92 (167)
T d1xeaa1          71 ----ATDVHSTLA---AFFLHLGIPTFVD   92 (167)
T ss_dssp             ----CGGGHHHHH---HHHHHTTCCEEEE
T ss_pred             ----ccccccccc---ccccccccccccC
Confidence                334444454   3445556545554

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.67  E-value=0.053  Score=44.40  Aligned_cols=34  Identities=15%  Similarity=0.184  Sum_probs=27.9

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP  157 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~  157 (318)
                      +|||+.||+|+.|+++-..+++  .|.+|+-+|-++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~--~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            5899999999999998666554  489999998654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.49  E-value=0.54  Score=35.55  Aligned_cols=57  Identities=12%  Similarity=0.070  Sum_probs=39.2

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCC---------hHHHHHHHHHhhcCCCCCCCeEEEEcc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDID---------PSANSKALSLVSSDPDLSTRMFFHTTD  183 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid---------~~ai~~Ar~~~~~~~gl~~ri~f~~gD  183 (318)
                      ..++||+.||+|+.|+.......+  .|..||-|+..         +++.+..++.+++     ..++++.+.
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~--~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~-----~gv~~~~~~   93 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAK--AGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA-----NNITIATGE   93 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHT-----TTEEEEESC
T ss_pred             cCCCEEEEECChHHHHHHHHHhhc--cceEEEEEEecCcccccccchhhHHHHHHHhhc-----CCeEEEeCc
Confidence            567899999999988876555544  49999999765         3445555565555     345555543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.34  E-value=0.23  Score=37.54  Aligned_cols=48  Identities=17%  Similarity=0.230  Sum_probs=38.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeC--------ChHHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDI--------DPSANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDi--------d~~ai~~Ar~~~~~  169 (318)
                      ..|++|+.||+|+.|+-...+.++  .|..|+-++.        |++..+..++.+++
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~--~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~   75 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDKFLPAVDEQVAKEAQKILTK   75 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHH
T ss_pred             cCCCeEEEECCChHHHHHHHHHHH--cCCceEEEEeecccCCcccchhHHHHHHHHHh
Confidence            678999999999988876666555  4999999984        56777777777776

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=91.33  E-value=1.4  Score=35.24  Aligned_cols=108  Identities=15%  Similarity=0.230  Sum_probs=60.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH-HHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN-SKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai-~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      .+..||..||+|..|.+..+.......-.++.-+|++++.. ..|..+.....-.........+|-.    +....|+|+
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~----~~~~adiVV   93 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYS----VTANSKIVV   93 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGG----GGTTCSEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchh----hcccccEEE
Confidence            45579999999998887665554332345899999997543 3444443321112334444444443    345789888


Q ss_pred             ecccc----CCCh----hHHHHHHHHHHHhc---cCCeEEEEEc
Q 021008          199 LAALV----GMDK----DEKIRVIDHLAKYM---APGALLMLRS  231 (318)
Q Consensus       199 ~aalv----gm~~----~~k~~vl~~l~r~L---kpGg~lv~r~  231 (318)
                      +.+-.    +++.    ..-.++++++.+.+   .|.|++++-+
T Consensus        94 itAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt  137 (160)
T d1i0za1          94 VTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS  137 (160)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            76644    3332    12233444444433   4566665544

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=91.24  E-value=0.19  Score=40.30  Aligned_cols=76  Identities=12%  Similarity=0.116  Sum_probs=45.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+++||.+|+|..+-+.++-...  .|++|+-+.++++..   +++.+. ..-...+...  +..+.  ....+|+|+.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~--~g~~i~I~nRt~~ka---~~l~~~-~~~~~~~~~~--~~~~~--~~~~~dliIN   85 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLS--LDCAVTITNRTVSRA---EELAKL-FAHTGSIQAL--SMDEL--EGHEFDLIIN   85 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSHHHH---HHHHHH-TGGGSSEEEC--CSGGG--TTCCCSEEEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcc--cceEEEeccchHHHH---HHHHHH-Hhhccccccc--ccccc--cccccceeec
Confidence            678999999999544443333233  478899999998544   344433 1111233332  22222  2347999998


Q ss_pred             ccccCC
Q 021008          200 AALVGM  205 (318)
Q Consensus       200 aalvgm  205 (318)
                      +.-+||
T Consensus        86 ~Tp~G~   91 (170)
T d1nyta1          86 ATSSGI   91 (170)
T ss_dssp             CCSCGG
T ss_pred             ccccCc
Confidence            776676

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.22  E-value=0.078  Score=43.23  Aligned_cols=98  Identities=13%  Similarity=0.189  Sum_probs=54.3

Q ss_pred             CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeC--ChHHHHHHHHHhhc-CCCCC-CCeEEEEccccccCcCCCCccEE
Q 021008          123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDI--DPSANSKALSLVSS-DPDLS-TRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDi--d~~ai~~Ar~~~~~-~~gl~-~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ++|..||+|..|.+.. .|++.   |-.|+-+..  +++.++.-++.-.. ..+.. ....+...  .++.......|+|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~---g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~ad~I   75 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDN---GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWP--EQLEKCLENAEVV   75 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH---CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECG--GGHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEEEEEecccHHHHHHHhhhhhhhhhcchhcccccccc--ccHHHHHhccchh
Confidence            5899999999877643 34432   557776654  55444433221111 01111 11122111  1222234478999


Q ss_pred             EeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      +++-    +...-..+++++...++++.++++
T Consensus        76 i~av----ps~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          76 LLGV----STDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             EECS----CGGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hccc----chhhhHHHHHhhccccccceeccc
Confidence            8764    345667899999999988655543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=91.21  E-value=0.21  Score=40.07  Aligned_cols=99  Identities=10%  Similarity=0.025  Sum_probs=54.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF  198 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~  198 (318)
                      ...++||.||.|.+|.........  .|+ .|+-+-.+.   ++|.++... .|.    ..  .+..++...+.+||+|+
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~--~g~~~i~v~nRt~---~ka~~l~~~-~~~----~~--~~~~~~~~~l~~~Divi   89 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVD--RGVRAVLVANRTY---ERAVELARD-LGG----EA--VRFDELVDHLARSDVVV   89 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHH--HCCSEEEEECSSH---HHHHHHHHH-HTC----EE--CCGGGHHHHHHTCSEEE
T ss_pred             cccCeEEEECCCHHHHHHHHHHHh--cCCcEEEEEcCcH---HHHHHHHHh-hhc----cc--ccchhHHHHhccCCEEE
Confidence            578999999999766544332222  265 688888885   344445444 221    11  23344444455899999


Q ss_pred             eccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008          199 LAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS  231 (318)
Q Consensus       199 ~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~  231 (318)
                      .+--.+.+.-.+ +.++...+.-+.+ ..++++-
T Consensus        90 ~atss~~~ii~~-~~i~~~~~~r~~~~~~~iiDl  122 (159)
T d1gpja2          90 SATAAPHPVIHV-DDVREALRKRDRRSPILIIDI  122 (159)
T ss_dssp             ECCSSSSCCBCH-HHHHHHHHHCSSCCCEEEEEC
T ss_pred             EecCCCCccccH-hhhHHHHHhcccCCCeEEEee
Confidence            764322222233 3343333333333 4566664

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.03  E-value=0.65  Score=35.11  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=29.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS  158 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~  158 (318)
                      .+++||+.||+|+.|+-.....++  .|.+||-|+.++.
T Consensus        28 ~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~   64 (121)
T d1d7ya2          28 RPQSRLLIVGGGVIGLELAATART--AGVHVSLVETQPR   64 (121)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred             hcCCeEEEECcchhHHHHHHHhhc--ccceEEEEeeccc
Confidence            567999999999888776554443  4999999987654

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=91.03  E-value=0.11  Score=41.97  Aligned_cols=117  Identities=20%  Similarity=0.258  Sum_probs=60.8

Q ss_pred             CCCEEEEEccCCChHHHH-HHHHhCCCCcEEEEE-eCChH--HHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCc
Q 021008          121 FPTKIAFIGSGPLPLTSI-VLAINHLTTTCFDNY-DIDPS--ANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDY  194 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai-~LA~~~~~ga~V~gv-Did~~--ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~f  194 (318)
                      +.-||..||||.+|...+ -+.+. .|..+++++ |++++  .+++|++.     |    +.+......++.  .+..+.
T Consensus         3 kkirvaIIGaG~ig~~~~~~~l~~-~~~~el~avas~~~~~~~~~~a~~~-----~----i~~~~~~~d~l~~~~~~~~i   72 (157)
T d1nvmb1           3 QKLKVAIIGSGNIGTDLMIKVLRN-AKYLEMGAMVGIDAASDGLARAQRM-----G----VTTTYAGVEGLIKLPEFADI   72 (157)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHH-CSSEEEEEEECSCTTCHHHHHHHHT-----T----CCEESSHHHHHHHSGGGGGE
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHhh-CCcceEEEEEecchhccchhhhhhc-----C----Ccccccceeeeeeccccccc
Confidence            456999999997766543 34344 488888887 77664  33444332     2    333333333321  123468


Q ss_pred             cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccccCCCccccCCcE
Q 021008          195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFE  252 (318)
Q Consensus       195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~v~~~~l~gf~  252 (318)
                      |+||++-    +...-.+ .+...+.++.|-.++-.++..--.+--|.+.++++.+..
T Consensus        73 DiVf~AT----pag~h~~-~~~~~~aa~~G~~VID~s~a~~vplvVPevN~~~~~~~~  125 (157)
T d1nvmb1          73 DFVFDAT----SASAHVQ-NEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEHLGKL  125 (157)
T ss_dssp             EEEEECS----CHHHHHH-HHHHHHHHCTTCEEEECSTTCSSCBCCHHHHTTTTTTCS
T ss_pred             CEEEEcC----CchhHHH-hHHHHHHHHcCCEEEEccccccceEEccCcCHHHHhcCC
Confidence            9999864    1111110 111234566666655554432222555556666665543

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.79  E-value=0.13  Score=41.78  Aligned_cols=77  Identities=22%  Similarity=0.148  Sum_probs=42.6

Q ss_pred             CEEEEEccCCChHHHH--HHHHhC--CCCcEEEEEeCChHH--HHHHH----HHhhcCCCCCCCeEEEEccccccCcCCC
Q 021008          123 TKIAFIGSGPLPLTSI--VLAINH--LTTTCFDNYDIDPSA--NSKAL----SLVSSDPDLSTRMFFHTTDIMNVSSALK  192 (318)
Q Consensus       123 ~rVL~IGsGplp~tai--~LA~~~--~~ga~V~gvDid~~a--i~~Ar----~~~~~~~gl~~ri~f~~gDa~~l~~~l~  192 (318)
                      .||..||+|..+.+..  .+++..  +...+++=+|++++.  .+...    +.+.. .+..-++... .|-   ...+.
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~-~~~~~~~~~~-td~---~~al~   76 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEK-AGVPIEIHLT-LDR---RRALD   76 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHH-TTCCCEEEEE-SCH---HHHHT
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHh-cCCCceeeec-CCc---hhhcC
Confidence            4899999998765432  233321  123699999999864  22222    22333 3333333322 222   12335


Q ss_pred             CccEEEeccccC
Q 021008          193 DYEVVFLAALVG  204 (318)
Q Consensus       193 ~fD~V~~aalvg  204 (318)
                      +.|+|++.+-++
T Consensus        77 gaDvVv~ta~~~   88 (169)
T d1s6ya1          77 GADFVTTQFRVG   88 (169)
T ss_dssp             TCSEEEECCCTT
T ss_pred             CCCEEEEccccC
Confidence            789999988663

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.40  E-value=0.02  Score=47.06  Aligned_cols=85  Identities=15%  Similarity=0.146  Sum_probs=49.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc---ccCcCCCCccE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM---NVSSALKDYEV  196 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~---~l~~~l~~fD~  196 (318)
                      ..+++|+.+|||..+-+.+.....+ ....++-++.+++..+.+..++++ .+..-.......+..   ++...+.++|+
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~-g~~~i~i~nR~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRDEFFDKALAFAQR-VNENTDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECSSTTHHHHHHHHHH-HHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhc-CCceEeeeccchHHHHHHHHHHHH-HHhhcCcceEeeecccccchhhhhcccce
Confidence            5679999999995544433332232 334799999998888777666544 221111222223332   22222347898


Q ss_pred             EEeccccCCC
Q 021008          197 VFLAALVGMD  206 (318)
Q Consensus       197 V~~aalvgm~  206 (318)
                      |+.+.-+||.
T Consensus        94 iIN~Tp~G~~  103 (182)
T d1vi2a1          94 LTNGTKVGMK  103 (182)
T ss_dssp             EEECSSTTST
T ss_pred             eccccCCccc
Confidence            8877666764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=90.30  E-value=0.58  Score=37.32  Aligned_cols=72  Identities=13%  Similarity=0.131  Sum_probs=45.8

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      ..++++||.+|+|..+-+.+.-.+.  .|+ +|+-+..+++   +++++... .+.    .+.    ..+  ...++|+|
T Consensus        14 ~~~~~~vlIlGaGGaarai~~aL~~--~g~~~I~I~nR~~~---ka~~L~~~-~~~----~~~----~~~--~~~~~Dli   77 (167)
T d1npya1          14 LNKNAKVIVHGSGGMAKAVVAAFKN--SGFEKLKIYARNVK---TGQYLAAL-YGY----AYI----NSL--ENQQADIL   77 (167)
T ss_dssp             CCTTSCEEEECSSTTHHHHHHHHHH--TTCCCEEEECSCHH---HHHHHHHH-HTC----EEE----SCC--TTCCCSEE
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEecccHH---HHHHHHHh-hhh----hhh----hcc--cccchhhh
Confidence            4577899999999766555444433  364 7888999985   45555554 222    121    111  23479999


Q ss_pred             EeccccCCC
Q 021008          198 FLAALVGMD  206 (318)
Q Consensus       198 ~~aalvgm~  206 (318)
                      +.+.-+||.
T Consensus        78 INaTpiGm~   86 (167)
T d1npya1          78 VNVTSIGMK   86 (167)
T ss_dssp             EECSSTTCT
T ss_pred             eeccccCCc
Confidence            987777874

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=90.29  E-value=0.087  Score=43.75  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=29.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS  158 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~  158 (318)
                      +...||+.||+||.|+++-...++  .|.+|+-+|.+++
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~--~G~~v~v~Er~~~   38 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQ   38 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCC
Confidence            456899999999988887555444  4999999997653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.21  E-value=0.28  Score=41.94  Aligned_cols=76  Identities=9%  Similarity=-0.042  Sum_probs=55.7

Q ss_pred             CCCEEEEEccCCChHHH---HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc----------
Q 021008          121 FPTKIAFIGSGPLPLTS---IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV----------  187 (318)
Q Consensus       121 ~~~rVL~IGsGplp~ta---i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l----------  187 (318)
                      +++.||..|++ .|+-.   ..||+   .|+.|+..|++++.++...+...+ .+...++.++.+|+.+-          
T Consensus         9 k~Kv~lITGas-~GIG~aiA~~la~---~G~~Vv~~~r~~~~l~~~~~~l~~-~~~~~~~~~~~~Dls~~~~v~~~v~~~   83 (257)
T d1xg5a_           9 RDRLALVTGAS-GGIGAAVARALVQ---QGLKVVGCARTVGNIEELAAECKS-AGYPGTLIPYRCDLSNEEDILSMFSAI   83 (257)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHH-TTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHh-cCCCceEEEEEccCCCHHHHHHHHHHH
Confidence            57889999987 35543   33343   499999999999998887776666 66667899999999872          


Q ss_pred             CcCCCCccEEEecc
Q 021008          188 SSALKDYEVVFLAA  201 (318)
Q Consensus       188 ~~~l~~fD~V~~aa  201 (318)
                      ....+..|+++..+
T Consensus        84 ~~~~g~iD~lVnnA   97 (257)
T d1xg5a_          84 RSQHSGVDICINNA   97 (257)
T ss_dssp             HHHHCCCSEEEECC
T ss_pred             HHhcCCCCEEEecc
Confidence            12345789877544

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.16  E-value=0.14  Score=38.38  Aligned_cols=48  Identities=8%  Similarity=0.119  Sum_probs=36.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCC--------hHHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDID--------PSANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid--------~~ai~~Ar~~~~~  169 (318)
                      ..|+||+.||+|+.|+......++  .|.+||-++..        +++.+..++.+++
T Consensus        19 ~~p~~vvIiGgG~~G~E~A~~l~~--~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~   74 (115)
T d1lvla2          19 ALPQHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARERILPTYDSELTAPVAESLKK   74 (115)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHhh--cccceEEEeeeccccccccchhHHHHHHHHHh
Confidence            667999999999988877665555  38999999875        4566666666666

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.12  E-value=0.62  Score=39.70  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=69.5

Q ss_pred             CCCEEEEEccCCChHH---HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---------
Q 021008          121 FPTKIAFIGSGPLPLT---SIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---------  188 (318)
Q Consensus       121 ~~~rVL~IGsGplp~t---ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---------  188 (318)
                      .++.++.-|++ -|+-   +..||+   .|++|...|++++.++...+.... .+.+.++.++.+|+.+..         
T Consensus         3 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~l~~~~~~~~~-~~~~~~~~~~~~Dvt~~~~v~~~~~~~   77 (258)
T d1iy8a_           3 TDRVVLITGGG-SGLGRATAVRLAA---EGAKLSLVDVSSEGLEASKAAVLE-TAPDAEVLTTVADVSDEAQVEAYVTAT   77 (258)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHH-HCTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHh-hCCCCeEEEEeccCCCHHHHHHHHHHH
Confidence            46788888886 3543   455665   499999999999998877666655 455678999999998732         


Q ss_pred             -cCCCCccEEEecccc--------CCChhHHHHHHH-----------HHHHhcc--CCeEEEEEc
Q 021008          189 -SALKDYEVVFLAALV--------GMDKDEKIRVID-----------HLAKYMA--PGALLMLRS  231 (318)
Q Consensus       189 -~~l~~fD~V~~aalv--------gm~~~~k~~vl~-----------~l~r~Lk--pGg~lv~r~  231 (318)
                       ...+..|+++..|-+        .++.+++.++++           .+.+.|+  .+|.++.-+
T Consensus        78 ~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~is  142 (258)
T d1iy8a_          78 TERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTA  142 (258)
T ss_dssp             HHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             HHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccc
Confidence             233578987754322        234466665553           4445554  456665544

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.10  E-value=1.2  Score=34.93  Aligned_cols=104  Identities=22%  Similarity=0.266  Sum_probs=56.3

Q ss_pred             CEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      .||..||+ |..|.+..++......-.++.-+|+++. ...|..+...  ..-.+...... ..+....++..|+|++.+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~-~~~a~Dl~~~--~~~~~~~~~~~-~~~~~~~~~~aDivVita   76 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT-PGVAADLSHI--ETRATVKGYLG-PEQLPDCLKGCDVVVIPA   76 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH-HHHHHHHTTS--SSSCEEEEEES-GGGHHHHHTTCSEEEECC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecccc-chhhHHHhhh--hhhcCCCeEEc-CCChHHHhCCCCEEEECC
Confidence            48999995 9999887666553212357999999874 3445544432  11122222222 122223345789888766


Q ss_pred             cc----CCCh----hHHHH----HHHHHHHhccCCeEEEEEc
Q 021008          202 LV----GMDK----DEKIR----VIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       202 lv----gm~~----~~k~~----vl~~l~r~LkpGg~lv~r~  231 (318)
                      -.    +|+.    ..-.+    +...+.++ .|.+.+++-+
T Consensus        77 g~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvt  117 (144)
T d1mlda1          77 GVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIIS  117 (144)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred             CcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence            44    3321    22233    44444443 5667666644

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.2  Score=40.85  Aligned_cols=89  Identities=12%  Similarity=-0.018  Sum_probs=54.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|..+|-|..|-.....++.  .|++|+.+|+||-..-.|  ..   -|.      ......   ..+..-|+|++
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg--~G~~V~v~e~dp~~al~A--~~---dG~------~v~~~~---~a~~~adivvt   85 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRG--FGARVIITEIDPINALQA--AM---EGY------EVTTMD---EACQEGNIFVT   85 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHH--HH---TTC------EECCHH---HHTTTCSEEEE
T ss_pred             ecCCEEEEeccccccHHHHHHHHh--CCCeeEeeecccchhHHh--hc---Cce------Eeeehh---hhhhhccEEEe
Confidence            689999999999887776666665  499999999999332222  11   121      122222   22346788886


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLR  230 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r  230 (318)
                      +--. .+.-.+.     -.+.||+|++|+--
T Consensus        86 aTGn-~~vI~~e-----h~~~MKdgaIL~N~  110 (163)
T d1li4a1          86 TTGC-IDIILGR-----HFEQMKDDAIVCNI  110 (163)
T ss_dssp             CSSC-SCSBCHH-----HHTTCCTTEEEEEC
T ss_pred             cCCC-ccchhHH-----HHHhccCCeEEEEe
Confidence            5421 0111222     24799998887653

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.66  E-value=0.094  Score=43.00  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=27.7

Q ss_pred             CCCEEEEEccCCChHHHHH-HHHh-C---CCCcEEEEEeCCh
Q 021008          121 FPTKIAFIGSGPLPLTSIV-LAIN-H---LTTTCFDNYDIDP  157 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~-LA~~-~---~~ga~V~gvDid~  157 (318)
                      .|.||+.||+||-|+++-. |+++ |   ..+..||-+|-++
T Consensus         1 rp~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           1 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CCcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            3679999999999988864 4432 1   2457899999876

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=89.65  E-value=0.19  Score=41.44  Aligned_cols=103  Identities=10%  Similarity=0.096  Sum_probs=59.5

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHh---hcC--CCCCCCeEEEEccccccCcCCCCccEE
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLV---SSD--PDLSTRMFFHTTDIMNVSSALKDYEVV  197 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~---~~~--~gl~~ri~f~~gDa~~l~~~l~~fD~V  197 (318)
                      .||+.||+|..|.+.-.+..+  -|-.|+-+++|++.++.-++.-   .-+  ..+.+++.+. .|..+.   +...|+|
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~--~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t-~~l~~a---~~~ad~i   81 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSK--KCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFT-SDVEKA---YNGAEII   81 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEE-SCHHHH---HTTCSCE
T ss_pred             ceEEEECCCHHHHHHHHHHHH--cCCeEEEEEecHHHHHHHhhcccccccccccccccccccc-hhhhhc---cCCCCEE
Confidence            489999999987765433332  3678999999998877543321   111  2345677653 444332   3467998


Q ss_pred             EeccccCCChhHHHHHHHHHHHh----ccCCeEEEEEcCCCc
Q 021008          198 FLAALVGMDKDEKIRVIDHLAKY----MAPGALLMLRSAHGA  235 (318)
Q Consensus       198 ~~aalvgm~~~~k~~vl~~l~r~----LkpGg~lv~r~~~g~  235 (318)
                      +++-    +...-..+++++...    +.++...++--..|+
T Consensus        82 iiav----Ps~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGi  119 (189)
T d1n1ea2          82 LFVI----PTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI  119 (189)
T ss_dssp             EECS----CHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred             EEcC----cHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCC
Confidence            8764    333444566665543    222333344444554

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.50  E-value=0.39  Score=35.78  Aligned_cols=50  Identities=8%  Similarity=0.054  Sum_probs=36.2

Q ss_pred             CCCCEEEEEccCCChHHHHHH-HHhCCCCcEEEEEeCC--------hHHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVL-AINHLTTTCFDNYDID--------PSANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~L-A~~~~~ga~V~gvDid--------~~ai~~Ar~~~~~  169 (318)
                      ..|++|+.||+|+.|+-...+ ++....|..|+-++.+        ++..+..++.+++
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~   74 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRA   74 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHH
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhh
Confidence            568999999999887765433 3222248899999874        5567777777776

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.46  E-value=0.29  Score=37.22  Aligned_cols=56  Identities=11%  Similarity=0.014  Sum_probs=42.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCC-------hHHHHHHHHHhhcCCCCCCCeEEEEc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDID-------PSANSKALSLVSSDPDLSTRMFFHTT  182 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid-------~~ai~~Ar~~~~~~~gl~~ri~f~~g  182 (318)
                      ..|+|++.||.|+.|+-.....+++  |++||-++.+       +++.+..++.+++     ..|+|+.+
T Consensus        18 ~~P~~vvIIGgG~iG~E~A~~l~~l--G~~Vtii~~~~~l~~~D~~~~~~l~~~l~~-----~Gv~i~~~   80 (122)
T d1h6va2          18 YCPGKTLVVGASYVALECAGFLAGI--GLDVTVMVRSILLRGFDQDMANKIGEHMEE-----HGIKFIRQ   80 (122)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSTTSCHHHHHHHHHHHHH-----TTEEEEES
T ss_pred             cCCCeEEEECCCccHHHHHHHHhhc--CCeEEEEEechhhccCCHHHHHHHHHHHHH-----CCCEEEEC
Confidence            6789999999999888876666664  8899988765       4466666777776     45666655

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.36  E-value=0.11  Score=43.33  Aligned_cols=38  Identities=11%  Similarity=0.174  Sum_probs=31.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA  159 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a  159 (318)
                      ..+++|+.||+||.|+++...+++  .|..|+-+|.+++.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~--~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHH--hccceeeEeecccc
Confidence            577999999999999998776555  48999999987744

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=89.25  E-value=0.053  Score=45.49  Aligned_cols=94  Identities=12%  Similarity=0.139  Sum_probs=55.9

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|..||.|.+|-...-+++.+  |++|.++|.........       .+.    .     ..++..-+...|+|.+
T Consensus        41 l~gk~vgIiG~G~IG~~va~~l~~f--g~~V~~~d~~~~~~~~~-------~~~----~-----~~~l~~~l~~sDii~~  102 (197)
T d1j4aa1          41 VRDQVVGVVGTGHIGQVFMQIMEGF--GAKVITYDIFRNPELEK-------KGY----Y-----VDSLDDLYKQADVISL  102 (197)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCHHHHH-------TTC----B-----CSCHHHHHHHCSEEEE
T ss_pred             ccCCeEEEecccccchhHHHhHhhh--cccccccCccccccccc-------cee----e-----eccccccccccccccc
Confidence            3578999999999988877777754  99999999776432211       111    0     1122222336798886


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ..-.  +.+.+.-+=++..+.|++|+.| +..++|
T Consensus       103 ~~pl--t~~T~~li~~~~l~~mk~~a~l-IN~sRG  134 (197)
T d1j4aa1         103 HVPD--VPANVHMINDESIAKMKQDVVI-VNVSRG  134 (197)
T ss_dssp             CSCC--CGGGTTCBSHHHHHHSCTTEEE-EECSCG
T ss_pred             cCCc--cccccccccHHHHhhhCCccEE-EecCch
Confidence            5421  2222222223445789998666 555454

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.04  E-value=0.16  Score=41.71  Aligned_cols=91  Identities=16%  Similarity=0.167  Sum_probs=56.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|..||.|.+|-....+++.+  |.+|.++|.++.          . ... .   + ..   ++..-+...|+|.+
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~--g~~v~~~d~~~~----------~-~~~-~---~-~~---~l~ell~~sDiv~~   98 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAAL--GAQVRGFSRTPK----------E-GPW-R---F-TN---SLEEALREARAAVC   98 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHT--TCEEEEECSSCC----------C-SSS-C---C-BS---CSHHHHTTCSEEEE
T ss_pred             ccCceEEEeccccccccceeeeecc--cccccccccccc----------c-cce-e---e-ee---chhhhhhccchhhc
Confidence            3578999999999887776777754  999999998752          1 111 1   1 11   22223457899887


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ..-  .+.+.+--+=++..+.||||++|+- -++|
T Consensus        99 ~~p--l~~~t~~li~~~~l~~mk~~ailIN-~~RG  130 (181)
T d1qp8a1          99 ALP--LNKHTRGLVKYQHLALMAEDAVFVN-VGRA  130 (181)
T ss_dssp             CCC--CSTTTTTCBCHHHHTTSCTTCEEEE-CSCG
T ss_pred             ccc--cccccccccccceeeeccccceEEe-cccc
Confidence            542  2223332222345589999887754 4444

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=89.01  E-value=0.36  Score=38.42  Aligned_cols=108  Identities=19%  Similarity=0.224  Sum_probs=57.7

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH-HHHHHHhhcCCCCCCCeEEE-EccccccCcCCCCccEE
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN-SKALSLVSSDPDLSTRMFFH-TTDIMNVSSALKDYEVV  197 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai-~~Ar~~~~~~~gl~~ri~f~-~gDa~~l~~~l~~fD~V  197 (318)
                      .+.+||..||+|..|.+..++.... +=+++.-+|++++.. ..|..+.......+...... +.|-.   .++.+-|+|
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~-~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~adiV   80 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALR-ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYE---AALTGADCV   80 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHH---HHHTTCSEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhC-CCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchh---hhhcCCCeE
Confidence            5778999999998886654433321 235899999998532 23333322101112222222 22221   123478988


Q ss_pred             EeccccC---------CCh----hHHHHHHHHHHHhc---cCCeEEEEEc
Q 021008          198 FLAALVG---------MDK----DEKIRVIDHLAKYM---APGALLMLRS  231 (318)
Q Consensus       198 ~~aalvg---------m~~----~~k~~vl~~l~r~L---kpGg~lv~r~  231 (318)
                      ++.+-++         |+.    ..-.+++.++.+.+   .|.|.+++-+
T Consensus        81 vitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs  130 (154)
T d1pzga1          81 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  130 (154)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             EEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            8877542         111    12244555555544   3777776644

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.76  E-value=1.7  Score=36.49  Aligned_cols=106  Identities=13%  Similarity=0.047  Sum_probs=66.8

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhC-CCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc----------Cc
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINH-LTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV----------SS  189 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~-~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l----------~~  189 (318)
                      .++.+|..|++ .|+-. .+|+++ ..|++|+.+|++++.++...+.++.   .+.++.++.+|+.+-          ..
T Consensus         9 enKvalITGas-~GIG~-a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~---~g~~~~~~~~Dvt~~~~v~~~~~~~~~   83 (251)
T d2c07a1           9 ENKVALVTGAG-RGIGR-EIAKMLAKSVSHVICISRTQKSCDSVVDEIKS---FGYESSGYAGDVSKKEEISEVINKILT   83 (251)
T ss_dssp             SSCEEEEESTT-SHHHH-HHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHH-HHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            45667777875 45432 233322 2499999999999988887777766   346799999999872          13


Q ss_pred             CCCCccEEEecccc-------CCChhHHHHHHH-----------HHHHhc--cCCeEEEEEc
Q 021008          190 ALKDYEVVFLAALV-------GMDKDEKIRVID-----------HLAKYM--APGALLMLRS  231 (318)
Q Consensus       190 ~l~~fD~V~~aalv-------gm~~~~k~~vl~-----------~l~r~L--kpGg~lv~r~  231 (318)
                      ..+..|+++..+-.       .++.+++.++++           .+.+.|  +.+|.++.-+
T Consensus        84 ~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnis  145 (251)
T d2c07a1          84 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINIS  145 (251)
T ss_dssp             HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             hcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEEC
Confidence            44678977754422       123355555443           344555  4467776654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.65  E-value=0.59  Score=34.86  Aligned_cols=50  Identities=8%  Similarity=0.032  Sum_probs=35.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCC-CCcEEEEEeC--------ChHHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHL-TTTCFDNYDI--------DPSANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~-~ga~V~gvDi--------d~~ai~~Ar~~~~~  169 (318)
                      ..|+||+.||+|+.|.-.-...+.+. .+.+||-|+.        |+++.+..++.+++
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~   76 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTA   76 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHH
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHh
Confidence            67899999999988777443333332 3678999986        45666667777776

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.57  E-value=0.12  Score=42.71  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=27.9

Q ss_pred             EEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChH
Q 021008          124 KIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPS  158 (318)
Q Consensus       124 rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~  158 (318)
                      ||+.||+||.|+|+.. |++. ..|.+||-+|-.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~-~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKH-HSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-CSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhc-CCCCeEEEEeCCCC
Confidence            8999999999999875 4443 36889999998874

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.45  E-value=0.42  Score=41.11  Aligned_cols=106  Identities=8%  Similarity=0.087  Sum_probs=70.1

Q ss_pred             CCCEEEEEccCCChH---HHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC-CCCCeEEEEccccccC--------
Q 021008          121 FPTKIAFIGSGPLPL---TSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD-LSTRMFFHTTDIMNVS--------  188 (318)
Q Consensus       121 ~~~rVL~IGsGplp~---tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g-l~~ri~f~~gDa~~l~--------  188 (318)
                      .+++++.-|++ .|+   ++..||+   .|++|+..|++++.++.+.+.+.+ .| .+.++.++.+|+.+..        
T Consensus         3 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~i~~-~~~~~~~~~~~~~Dv~~~~~v~~~~~~   77 (274)
T d1xhla_           3 SGKSVIITGSS-NGIGRSAAVIFAK---EGAQVTITGRNEDRLEETKQQILK-AGVPAEKINAVVADVTEASGQDDIINT   77 (274)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHH-TTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHH-cCCCCcceEEEEeeCCCHHHHHHHHHH
Confidence            57888888886 454   3455555   499999999999988887776666 44 3568999999998731        


Q ss_pred             --cCCCCccEEEeccccC---------CChhHHHHHHH-----------HHHHhc--cCCeEEEEEc
Q 021008          189 --SALKDYEVVFLAALVG---------MDKDEKIRVID-----------HLAKYM--APGALLMLRS  231 (318)
Q Consensus       189 --~~l~~fD~V~~aalvg---------m~~~~k~~vl~-----------~l~r~L--kpGg~lv~r~  231 (318)
                        ...+..|+++..+-..         ++.+++.++++           .+.+.|  ++||.+++-+
T Consensus        78 ~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~s  144 (274)
T d1xhla_          78 TLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSS  144 (274)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchh
Confidence              2335679877544321         13345555543           455666  4567776655

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.40  E-value=1  Score=35.33  Aligned_cols=77  Identities=22%  Similarity=0.283  Sum_probs=46.8

Q ss_pred             CEEEEEc-cCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          123 TKIAFIG-SGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IG-sGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      .||..|| +|..|.+..+ |+.+..-..++.-+|+++.+...|..+...  ..........+.. +. .++..-|+|++.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~--~~~~~~~~~~~~~-~~-~~~~~aDvvvit   76 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHI--PTAVKIKGFSGED-AT-PALEGADVVLIS   76 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTS--CSSCEEEEECSSC-CH-HHHTTCSEEEEC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCC--ccccCCcEEEcCC-Cc-cccCCCCEEEEC
Confidence            4899999 5988876544 444433467899999998776666655443  2223333332221 12 233468998887


Q ss_pred             ccc
Q 021008          201 ALV  203 (318)
Q Consensus       201 alv  203 (318)
                      +-.
T Consensus        77 aG~   79 (145)
T d2cmda1          77 AGV   79 (145)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            754

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.34  E-value=1.8  Score=36.61  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=66.5

Q ss_pred             CCCEEEEEccCCChH---HHHHHHHhCCCCcEEEEEeCC-hHHHHHHHHHhhcCCCCCCCeEEEEcccccc---------
Q 021008          121 FPTKIAFIGSGPLPL---TSIVLAINHLTTTCFDNYDID-PSANSKALSLVSSDPDLSTRMFFHTTDIMNV---------  187 (318)
Q Consensus       121 ~~~rVL~IGsGplp~---tai~LA~~~~~ga~V~gvDid-~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l---------  187 (318)
                      .++++|.-|++ .|+   .+..|++   .|+.|+..|++ ++..+...+.+++   .+.++.++.+|+.+.         
T Consensus        17 ~gK~~lITGas-~GIG~aia~~la~---~Ga~Vvi~~~~~~~~~~~~~~~~~~---~g~~~~~~~~D~~~~~~v~~~~~~   89 (272)
T d1g0oa_          17 EGKVALVTGAG-RGIGREMAMELGR---RGCKVIVNYANSTESAEEVVAAIKK---NGSDAACVKANVGVVEDIVRMFEE   89 (272)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---cCCEEEEEeCCchHHHHHHHHHHHh---hCCceeeEeCCCCCHHHHHHHHHH
Confidence            56888888875 454   3445555   49999999987 4455555555555   346799999999872         


Q ss_pred             -CcCCCCccEEEecccc-------CCChhHHHHH-----------HHHHHHhccCCeEEEEEc
Q 021008          188 -SSALKDYEVVFLAALV-------GMDKDEKIRV-----------IDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       188 -~~~l~~fD~V~~aalv-------gm~~~~k~~v-----------l~~l~r~LkpGg~lv~r~  231 (318)
                       ....+..|+++..+-.       .++.++..+.           .+.+.+.|+.+|.+++-.
T Consensus        90 ~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          90 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence             1233467876644322       2233444444           556788888888766654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.19  E-value=0.083  Score=43.56  Aligned_cols=95  Identities=13%  Similarity=0.114  Sum_probs=57.3

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      ..+++|..||.|.+|-....+++.  -|.+|.++|....--......          +++  .+..++   +...|+|.+
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~--fg~~v~~~d~~~~~~~~~~~~----------~~~--~~l~el---l~~sDiv~~  104 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAA--FGAYVVAYDPYVSPARAAQLG----------IEL--LSLDDL---LARADFISV  104 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHT--TTCEEEEECTTSCHHHHHHHT----------CEE--CCHHHH---HHHCSEEEE
T ss_pred             ccceeeeeccccchhHHHHHHhhh--ccceEEeecCCCChhHHhhcC----------cee--ccHHHH---HhhCCEEEE
Confidence            567999999999988877777775  499999999875432222111          121  122222   236788876


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ..-  .+.+.+-=+=++..+.||||+.| ++.+.|
T Consensus       105 ~~P--lt~~T~~lin~~~l~~mk~~a~l-IN~sRG  136 (184)
T d1ygya1         105 HLP--KTPETAGLIDKEALAKTKPGVII-VNAARG  136 (184)
T ss_dssp             CCC--CSTTTTTCBCHHHHTTSCTTEEE-EECSCT
T ss_pred             cCC--CCchhhhhhhHHHHhhhCCCceE-EEecch
Confidence            542  22232222223445899998776 555444

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.12  E-value=0.27  Score=34.94  Aligned_cols=45  Identities=18%  Similarity=0.056  Sum_probs=38.0

Q ss_pred             CCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHH
Q 021008          120 RFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSL  166 (318)
Q Consensus       120 ~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~  166 (318)
                      .++.+||..|. |..|..++.+|+..  |++|+++--+++-.++.+++
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~--G~~Vi~~t~s~~k~~~~~~l   75 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKSL   75 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHH
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHHC
Confidence            67788888775 66888889999864  99999999999999988765

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.02  E-value=0.67  Score=39.24  Aligned_cols=78  Identities=10%  Similarity=0.072  Sum_probs=54.3

Q ss_pred             CCCEEEEEccCCChHH---HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---------
Q 021008          121 FPTKIAFIGSGPLPLT---SIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---------  188 (318)
Q Consensus       121 ~~~rVL~IGsGplp~t---ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---------  188 (318)
                      .++.+|.-|++ .|+-   +..||+   .|++|..+|++++..+.+.+.... ..-+.++.++.+|+.+..         
T Consensus         2 ~GKvalITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~   76 (254)
T d2gdza1           2 NGKVALVTGAA-QGIGRAFAEALLL---KGAKVALVDWNLEAGVQCKAALHE-QFEPQKTLFIQCDVADQQQLRDTFRKV   76 (254)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHTT-TSCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHH-hcCCCcEEEEEeecCCHHHHHHHHHHH
Confidence            46778888875 3443   234444   499999999999988877666554 334578999999998732         


Q ss_pred             -cCCCCccEEEecccc
Q 021008          189 -SALKDYEVVFLAALV  203 (318)
Q Consensus       189 -~~l~~fD~V~~aalv  203 (318)
                       ...+..|+++..+.+
T Consensus        77 ~~~~G~iDilVnnAg~   92 (254)
T d2gdza1          77 VDHFGRLDILVNNAGV   92 (254)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCcCeecccccc
Confidence             233578988866644

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.55  E-value=0.26  Score=37.49  Aligned_cols=48  Identities=15%  Similarity=0.156  Sum_probs=37.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeC--------ChHHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDI--------DPSANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDi--------d~~ai~~Ar~~~~~  169 (318)
                      ..|++++.||+|..|+-...+..+  .|++||-++.        |+++.+...+.+++
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~--~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~   78 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFASEIVPTMDAEIRKQFQRSLEK   78 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEccchHHHHHHHHHHh--cCCeEEEEEEccccCchhhhcchhhhhhhhhc
Confidence            678999999999887776555554  3999999976        56666776777776

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=87.34  E-value=0.51  Score=35.07  Aligned_cols=48  Identities=6%  Similarity=-0.058  Sum_probs=34.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH--------HHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS--------ANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~--------ai~~Ar~~~~~  169 (318)
                      .++++|+.||+|+.|+-.....++  .|..|+-++..+.        .-+..++.+++
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~--~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~   75 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTEPLKLIKDNETRAYVLDRMKE   75 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTTTCCSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh--cchhheEeeccchhhcccccchhhhhhhhhhc
Confidence            567999999999888765555444  4999999996543        44555556555

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=87.05  E-value=1.2  Score=37.85  Aligned_cols=104  Identities=17%  Similarity=0.135  Sum_probs=69.8

Q ss_pred             CCCEEEEEccCCChH---HHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---------
Q 021008          121 FPTKIAFIGSGPLPL---TSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---------  188 (318)
Q Consensus       121 ~~~rVL~IGsGplp~---tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---------  188 (318)
                      .++.++.-|++ .|+   .+..||+   .|+.|+.+|++++.++.+.+.++.   .+.++.++.+|+.+-.         
T Consensus         4 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~~~~---~g~~~~~~~~Dv~~~~~v~~~~~~~   76 (260)
T d1zema1           4 NGKVCLVTGAG-GNIGLATALRLAE---EGTAIALLDMNREALEKAEASVRE---KGVEARSYVCDVTSEEAVIGTVDSV   76 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHT---TTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHH
Confidence            57888888976 344   3455665   499999999999999888877776   3467999999998621         


Q ss_pred             -cCCCCccEEEeccc-c-------CCChhHHHHHH-----------HHHHHhc--cCCeEEEEEc
Q 021008          189 -SALKDYEVVFLAAL-V-------GMDKDEKIRVI-----------DHLAKYM--APGALLMLRS  231 (318)
Q Consensus       189 -~~l~~fD~V~~aal-v-------gm~~~~k~~vl-----------~~l~r~L--kpGg~lv~r~  231 (318)
                       ...+..|+++..+- .       .++.+++.+++           +.+.+.|  +.+|.++.-+
T Consensus        77 ~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~is  141 (260)
T d1zema1          77 VRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTA  141 (260)
T ss_dssp             HHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             HHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeee
Confidence             23357887774332 1       22445555543           3455655  5677777655

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=86.94  E-value=0.077  Score=44.27  Aligned_cols=96  Identities=19%  Similarity=0.154  Sum_probs=56.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|..||.|.+|-...-+++.  -|++|.++|.....-.....      +    +.. ..+..++   +...|+|.+
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~--fg~~v~~~d~~~~~~~~~~~------~----~~~-~~~l~~l---l~~sD~i~~  110 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKA--FGFNVLFYDPYLSDGVERAL------G----LQR-VSTLQDL---LFHSDCVTL  110 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHT--TTCEEEEECTTSCTTHHHHH------T----CEE-CSSHHHH---HHHCSEEEE
T ss_pred             eeCceEEEeccccccccceeeeec--cccceeeccCcccccchhhh------c----ccc-ccchhhc---cccCCEEEE
Confidence            578999999999988887777764  49999999986542111110      1    111 1122222   235788876


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ..-.  +.+.+.-+=.+....||||+.| ++.++|
T Consensus       111 ~~pl--t~~T~~li~~~~l~~mk~~a~l-IN~sRG  142 (193)
T d1mx3a1         111 HCGL--NEHNHHLINDFTVKQMRQGAFL-VNTARG  142 (193)
T ss_dssp             CCCC--CTTCTTSBSHHHHTTSCTTEEE-EECSCT
T ss_pred             eecc--cccchhhhhHHHHhccCCCCeE-EecCCc
Confidence            5422  2222222223345789998766 455444

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.87  E-value=1.3  Score=37.53  Aligned_cols=75  Identities=19%  Similarity=0.204  Sum_probs=53.5

Q ss_pred             CCCCEEEEEccCCChHHH---HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--------
Q 021008          120 RFPTKIAFIGSGPLPLTS---IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--------  188 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~ta---i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--------  188 (318)
                      -.++.++.-|++ .|+-.   ..||+   .|++|+..|++++.++...+.+++   .+.++.++.+|+.+..        
T Consensus         9 L~gK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~~~~~~~~l~~---~g~~~~~~~~Dvs~~~~~~~~~~~   81 (255)
T d1fmca_           9 LDGKCAIITGAG-AGIGKEIAITFAT---AGASVVVSDINADAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADF   81 (255)
T ss_dssp             CTTCEEEETTTT-SHHHHHHHHHHHT---TTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHH---cCCcEEEEEccCCCHHHHHHHHHH
Confidence            367888888876 34432   33443   599999999999988887777666   3468899999998721        


Q ss_pred             --cCCCCccEEEecc
Q 021008          189 --SALKDYEVVFLAA  201 (318)
Q Consensus       189 --~~l~~fD~V~~aa  201 (318)
                        ...+..|+++..+
T Consensus        82 ~~~~~g~iDilvnnA   96 (255)
T d1fmca_          82 AISKLGKVDILVNNA   96 (255)
T ss_dssp             HHHHHSSCCEEEECC
T ss_pred             HHHHcCCCCEeeeCC
Confidence              2335788877554

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.13  E-value=3  Score=34.75  Aligned_cols=71  Identities=10%  Similarity=0.000  Sum_probs=48.8

Q ss_pred             CCCCEEEEEccCCChHH---HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc------CcC
Q 021008          120 RFPTKIAFIGSGPLPLT---SIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV------SSA  190 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~t---ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l------~~~  190 (318)
                      -.+++||..|++ .|+-   +..|++   .|++|+.+|++++.++..   .++ .   ..+.+++.|+.+.      ...
T Consensus         5 L~GK~~lITGas-~GIG~aia~~la~---~G~~V~~~~r~~~~l~~~---~~~-~---~~~~~~~~Dv~d~~~v~~~~~~   73 (244)
T d1pr9a_           5 LAGRRVLVTGAG-KGIGRGTVQALHA---TGARVVAVSRTQADLDSL---VRE-C---PGIEPVCVDLGDWEATERALGS   73 (244)
T ss_dssp             CTTCEEEEESTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHH---HHH-S---TTCEEEECCTTCHHHHHHHHTT
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHH---cCCEEEEEECCHHHHHHH---HHh-c---CCCeEEEEeCCCHHHHHHHHHH
Confidence            468999999987 4543   244444   499999999999776554   333 1   2467888998862      235


Q ss_pred             CCCccEEEecc
Q 021008          191 LKDYEVVFLAA  201 (318)
Q Consensus       191 l~~fD~V~~aa  201 (318)
                      .++.|+++..+
T Consensus        74 ~g~iDilVnnA   84 (244)
T d1pr9a_          74 VGPVDLLVNNA   84 (244)
T ss_dssp             CCCCCEEEECC
T ss_pred             hCCceEEEecc
Confidence            56889877554

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.07  E-value=1.2  Score=34.72  Aligned_cols=89  Identities=18%  Similarity=0.211  Sum_probs=48.2

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCC-CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLT-TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA  201 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~-ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa  201 (318)
                      .||.+||.|.+|..   +|++... |..++..|..+.+.+.+.+. ..          ..... +   .....|++++..
T Consensus         1 ekIg~IGlG~MG~~---ma~~L~~~g~~~~~~~~~~~~~~~~~~~-~~----------~~~~~-~---~~~~~~~~i~~~   62 (156)
T d2cvza2           1 EKVAFIGLGAMGYP---MAGHLARRFPTLVWNRTFEKALRHQEEF-GS----------EAVPL-E---RVAEARVIFTCL   62 (156)
T ss_dssp             CCEEEECCSTTHHH---HHHHHHTTSCEEEECSSTHHHHHHHHHH-CC----------EECCG-G---GGGGCSEEEECC
T ss_pred             CeEEEEeHHHHHHH---HHHHHHhCCCEEEEeCCHHHHHHHHHHc-CC----------ccccc-c---cccceeEEEecc
Confidence            48999999998855   3333222 44555444444443333321 11          01111 1   122456666543


Q ss_pred             ccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008          202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRSA  232 (318)
Q Consensus       202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~  232 (318)
                      .   +.+.-......+...+++|..++-.+.
T Consensus        63 ~---~~~~v~~~~~~l~~~~~~~~~iid~sT   90 (156)
T d2cvza2          63 P---TTREVYEVAEALYPYLREGTYWVDATS   90 (156)
T ss_dssp             S---SHHHHHHHHHHHTTTCCTTEEEEECSC
T ss_pred             c---chhhhhhhhcccccccccccccccccc
Confidence            2   234445677888888998887766553

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.87  E-value=0.8  Score=39.15  Aligned_cols=76  Identities=9%  Similarity=0.087  Sum_probs=54.8

Q ss_pred             CCCEEEEEccCCChHH---HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC-CCCeEEEEccccccC--------
Q 021008          121 FPTKIAFIGSGPLPLT---SIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL-STRMFFHTTDIMNVS--------  188 (318)
Q Consensus       121 ~~~rVL~IGsGplp~t---ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl-~~ri~f~~gDa~~l~--------  188 (318)
                      .+++++..|++ .|+-   +..||+   .|++|+..|++++.++.+.+.+.+ .+. +.++.++.+|+.+..        
T Consensus         4 ~gK~alVTGas-~GIG~aia~~la~---~Ga~V~l~~r~~~~l~~~~~~l~~-~~~~~~~~~~~~~Dvs~~~~v~~~~~~   78 (272)
T d1xkqa_           4 SNKTVIITGSS-NGIGRTTAILFAQ---EGANVTITGRSSERLEETRQIILK-SGVSEKQVNSVVADVTTEDGQDQIINS   78 (272)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHT-TTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHh-cCCCCCceEEEEccCCCHHHHHHHHHH
Confidence            46788888876 3543   344554   499999999999999888887776 443 467999999998721        


Q ss_pred             --cCCCCccEEEecc
Q 021008          189 --SALKDYEVVFLAA  201 (318)
Q Consensus       189 --~~l~~fD~V~~aa  201 (318)
                        ...+..|+++..+
T Consensus        79 ~~~~~g~iDilvnnA   93 (272)
T d1xkqa_          79 TLKQFGKIDVLVNNA   93 (272)
T ss_dssp             HHHHHSCCCEEEECC
T ss_pred             HHHHhCCceEEEeCC
Confidence              2335789887654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.84  E-value=2.6  Score=35.28  Aligned_cols=73  Identities=12%  Similarity=-0.001  Sum_probs=49.3

Q ss_pred             CEEEEEccCC-ChH-HHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----------cC
Q 021008          123 TKIAFIGSGP-LPL-TSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----------SA  190 (318)
Q Consensus       123 ~rVL~IGsGp-lp~-tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----------~~  190 (318)
                      +.+|.-|++. +|. .+..||+   .|++|+..|++++.++...+.++.   .+.++.++.+|+.+..          ..
T Consensus         3 KValITGas~GIG~aia~~la~---~Ga~V~i~~r~~~~l~~~~~~l~~---~g~~~~~~~~Dvs~~~~v~~~~~~~~~~   76 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGK---EGLRVFVCARGEEGLRTTLKELRE---AGVEADGRTCDVRSVPEIEALVAAVVER   76 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            3345556642 333 2344555   499999999999988887766666   3467999999998732          23


Q ss_pred             CCCccEEEecc
Q 021008          191 LKDYEVVFLAA  201 (318)
Q Consensus       191 l~~fD~V~~aa  201 (318)
                      .+..|+++..|
T Consensus        77 ~g~iDilVnnA   87 (257)
T d2rhca1          77 YGPVDVLVNNA   87 (257)
T ss_dssp             TCSCSEEEECC
T ss_pred             hCCCCEEEecc
Confidence            45789877554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=85.76  E-value=1.4  Score=36.22  Aligned_cols=57  Identities=14%  Similarity=0.016  Sum_probs=39.8

Q ss_pred             HHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhh
Q 021008          104 IKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVS  168 (318)
Q Consensus       104 ~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~  168 (318)
                      +.|++.-+..+    ..++..|||-=+|. |.|+ ..|.+  .|=+.+|+|+|++.++.|++.+.
T Consensus       199 ~~L~~~lI~~~----s~~gd~VlDpF~GS-GTT~-~aa~~--~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         199 RDLIERIIRAS----SNPNDLVLDCFMGS-GTTA-IVAKK--LGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEESSCTT-CHHH-HHHHH--TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHh----CCCCCEEEECCCCc-hHHH-HHHHH--cCCeEEEEeCCHHHHHHHHHHHc
Confidence            34444444433    37889999865552 3444 44554  48899999999999999998765

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=85.73  E-value=3.8  Score=32.88  Aligned_cols=80  Identities=16%  Similarity=0.086  Sum_probs=44.4

Q ss_pred             CCCCEEEEEc-cCCChHHHHHH-HHhCCCC----cEEEEEeCChHH---HHHHHHHhhcCCCCCCCeEEEEccccccCcC
Q 021008          120 RFPTKIAFIG-SGPLPLTSIVL-AINHLTT----TCFDNYDIDPSA---NSKALSLVSSDPDLSTRMFFHTTDIMNVSSA  190 (318)
Q Consensus       120 ~~~~rVL~IG-sGplp~tai~L-A~~~~~g----a~V~gvDid~~a---i~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~  190 (318)
                      ..+.||..+| +|.+|.+.+++ |+.-.-|    ..++-+|+++..   -..+-.+... .....+-.....|..+   +
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~-a~~~~~~~~~~~~~~~---~   97 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS-LYPLLREVSIGIDPYE---V   97 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT-TCTTEEEEEEESCHHH---H
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccc-ccccccCccccccchh---h
Confidence            5788999999 49888887654 3321112    367778887743   2233333222 1111223333443332   3


Q ss_pred             CCCccEEEecccc
Q 021008          191 LKDYEVVFLAALV  203 (318)
Q Consensus       191 l~~fD~V~~aalv  203 (318)
                      ...-|+|++.+..
T Consensus        98 ~~~aDvVvi~ag~  110 (175)
T d7mdha1          98 FEDVDWALLIGAK  110 (175)
T ss_dssp             TTTCSEEEECCCC
T ss_pred             ccCCceEEEeecc
Confidence            4578988876644

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.55  E-value=0.44  Score=35.90  Aligned_cols=56  Identities=11%  Similarity=0.024  Sum_probs=38.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH-------HHHHHHHHhhcCCCCCCCeEEEEc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS-------ANSKALSLVSSDPDLSTRMFFHTT  182 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~-------ai~~Ar~~~~~~~gl~~ri~f~~g  182 (318)
                      ..+++|+.||+|+.|+.......+  .|.+||-|+.++.       +.+..++.+++     ..|+|+.+
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~-----~GV~~~~~   92 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGAMFLGLDEELSNMIKDMLEE-----TGVKFFLN   92 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHH--TTCEEEEECSSSCCTTCCHHHHHHHHHHHHH-----TTEEEECS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhc--ccceEEEEeccccccCCCHHHHHHHHHHHHH-----CCcEEEeC
Confidence            346899999999888876555444  4999999997654       55555565665     34666554

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.36  E-value=2.7  Score=33.03  Aligned_cols=99  Identities=16%  Similarity=0.244  Sum_probs=60.3

Q ss_pred             CCCEEEEEccCC-ChHHHHHHHHhCCCCcEEEEE-----eCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCc
Q 021008          121 FPTKIAFIGSGP-LPLTSIVLAINHLTTTCFDNY-----DIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDY  194 (318)
Q Consensus       121 ~~~rVL~IGsGp-lp~tai~LA~~~~~ga~V~gv-----Did~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~f  194 (318)
                      .+.+|++||-|. ..-|.+.++..+  |.+|+-+     ..+++.++++++....   ....+++. -|..+   .....
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~--g~~v~~~~P~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~d~~e---a~~~a   73 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKL--GADVVVATPEGYEPDEKVIKWAEQNAAE---SGGSFELL-HDPVK---AVKDA   73 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHT--TCEEEEECCTTCCCCHHHHHHHHHHHHH---HTCEEEEE-SCHHH---HTTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHc--CCeEEEecccccCCChHHHHHHHHhhhc---ccceEEEe-cCHHH---Hhhhc
Confidence            578999999975 223334455543  8888877     6788889999887665   22334443 23322   34578


Q ss_pred             cEEEeccccCC----ChhHHHHHH------HHHHHhccCCeEEE
Q 021008          195 EVVFLAALVGM----DKDEKIRVI------DHLAKYMAPGALLM  228 (318)
Q Consensus       195 D~V~~aalvgm----~~~~k~~vl------~~l~r~LkpGg~lv  228 (318)
                      |+|++.....+    +.+.+.+.+      .+....++|+++++
T Consensus        74 dviy~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iim  117 (163)
T d1pvva2          74 DVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFM  117 (163)
T ss_dssp             SEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEE
T ss_pred             cEEeecceeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEe
Confidence            99997764433    122333333      45556677777664

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.35  E-value=1.4  Score=37.14  Aligned_cols=104  Identities=14%  Similarity=0.047  Sum_probs=67.5

Q ss_pred             CCCEEEEEccCCChH---HHHHHHHhCCCCcEEEEEeCChHHHHHHH-HHhhcCCCCCCCeEEEEccccccC--------
Q 021008          121 FPTKIAFIGSGPLPL---TSIVLAINHLTTTCFDNYDIDPSANSKAL-SLVSSDPDLSTRMFFHTTDIMNVS--------  188 (318)
Q Consensus       121 ~~~rVL~IGsGplp~---tai~LA~~~~~ga~V~gvDid~~ai~~Ar-~~~~~~~gl~~ri~f~~gDa~~l~--------  188 (318)
                      .++.++.-|++ .|+   .+..||+   .|++|...|++++..+... ++.++   .+.++.++.+|+.+-.        
T Consensus         4 ~gK~~lITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~l~~~---~g~~~~~~~~Dv~~~~~v~~~~~~   76 (251)
T d1vl8a_           4 RGRVALVTGGS-RGLGFGIAQGLAE---AGCSVVVASRNLEEASEAAQKLTEK---YGVETMAFRCDVSNYEEVKKLLEA   76 (251)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHH---HCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHH---hCCcEEEEEccCCCHHHHHHHHHH
Confidence            57889999986 354   3455565   4999999999998876554 44444   3467889999998621        


Q ss_pred             --cCCCCccEEEecccc-------CCChhHHHHH-----------HHHHHHhccC--CeEEEEEc
Q 021008          189 --SALKDYEVVFLAALV-------GMDKDEKIRV-----------IDHLAKYMAP--GALLMLRS  231 (318)
Q Consensus       189 --~~l~~fD~V~~aalv-------gm~~~~k~~v-----------l~~l~r~Lkp--Gg~lv~r~  231 (318)
                        ...+..|+++..|-+       .++.+++.++           .+.+.+.|+.  +|.++.-.
T Consensus        77 ~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~  141 (251)
T d1vl8a_          77 VKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG  141 (251)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence              233578987755433       2244555443           4566778854  56666554

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=85.34  E-value=0.82  Score=36.60  Aligned_cols=77  Identities=14%  Similarity=0.154  Sum_probs=45.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .++++|+.+|+|..+-+.+.-...  .+.+|+-+..+++.   |+++... .+....+....-|..    .+..+|+|+.
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~--~~~~i~I~nR~~~~---a~~l~~~-~~~~~~~~~~~~~~~----~~~~~diiIN   85 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQ--AQQNIVLANRTFSK---TKELAER-FQPYGNIQAVSMDSI----PLQTYDLVIN   85 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHH--TTCEEEEEESSHHH---HHHHHHH-HGGGSCEEEEEGGGC----CCSCCSEEEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcc--cCceeeeccchHHH---HHHHHHH-Hhhccccchhhhccc----cccccceeee
Confidence            678999999999554444332222  46799999999854   4444433 111123444333322    3458999998


Q ss_pred             ccccCCC
Q 021008          200 AALVGMD  206 (318)
Q Consensus       200 aalvgm~  206 (318)
                      +.-+||.
T Consensus        86 ~tp~g~~   92 (171)
T d1p77a1          86 ATSAGLS   92 (171)
T ss_dssp             CCCC---
T ss_pred             ccccccc
Confidence            8767763

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=85.30  E-value=0.79  Score=36.62  Aligned_cols=94  Identities=10%  Similarity=-0.015  Sum_probs=51.6

Q ss_pred             CCEEEEEccCCChHHH-HHHHHhCCCCcEEEEE-eCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          122 PTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNY-DIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       122 ~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gv-Did~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      .-||..||||..|-.. +-..+.+.....+++| |.|++..   +++... .+.    .....|..++. +....|+|++
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~---~~~~~~-~~~----~~~~~~~~ell-~~~~id~v~I   73 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHA---EEFAKM-VGN----PAVFDSYEELL-ESGLVDAVDL   73 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH---HHHHHH-HSS----CEEESCHHHHH-HSSCCSEEEE
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhh---hhhhcc-ccc----cceeeeeeccc-cccccceeec
Confidence            3589999999655432 2222233223678865 8888554   444443 222    12345655653 2347999998


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      +.    +.....+++   ...++.|=-+++.-
T Consensus        74 ~t----p~~~h~~~~---~~al~~gk~V~~EK   98 (181)
T d1zh8a1          74 TL----PVELNLPFI---EKALRKGVHVICEK   98 (181)
T ss_dssp             CC----CGGGHHHHH---HHHHHTTCEEEEES
T ss_pred             cc----ccccccccc---ccccccchhhhcCC
Confidence            76    333444444   44455665555543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=84.84  E-value=0.35  Score=39.25  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=28.1

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP  157 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~  157 (318)
                      ...+||+.||+|..|+++-+..++  .|.+|+-||.++
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~--~G~~V~vier~~   39 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILAR--KGYSVHILARDL   39 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred             CCCCcEEEECccHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            567899999999988877544443  488999999753

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=84.74  E-value=0.2  Score=40.76  Aligned_cols=33  Identities=15%  Similarity=0.042  Sum_probs=26.5

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP  157 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~  157 (318)
                      .+|+.||+|+.|+++-+..++  .|.+|+-+|-++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~--~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHT--TTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCC
Confidence            479999999999988766554  488999998753

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.52  E-value=0.69  Score=35.25  Aligned_cols=48  Identities=17%  Similarity=0.133  Sum_probs=37.0

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeC--------ChHHHHHHHHHhhc
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDI--------DPSANSKALSLVSS  169 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDi--------d~~ai~~Ar~~~~~  169 (318)
                      ..|++++.||+|..|+-...+.+++  |.+||-++.        |+++.+...+.+++
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~--G~~Vtive~~~~il~~~d~~~~~~l~~~l~~   79 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTL--GSRLDVVEMMDGLMQGADRDLVKVWQKQNEY   79 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSSSSSTTSCHHHHHHHHHHHGG
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcC--CCEEEEEEeeccccccchhhHHHHHHHHHHH
Confidence            6789999999998888766555553  999999965        45676776766666

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=84.26  E-value=0.38  Score=37.03  Aligned_cols=37  Identities=19%  Similarity=0.225  Sum_probs=29.4

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS  158 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~  158 (318)
                      ..++||+.||+|+.|+......++  .|..|+-++..+.
T Consensus        33 ~~~k~v~VIGgG~iG~E~A~~l~~--~g~~Vtvie~~~~   69 (133)
T d1q1ra2          33 IADNRLVVIGGGYIGLEVAATAIK--ANMHVTLLDTAAR   69 (133)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSS
T ss_pred             ccCCEEEEECCchHHHHHHHHHHh--hCcceeeeeeccc
Confidence            578999999999888876655554  4999999997644

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.84  E-value=0.34  Score=39.85  Aligned_cols=35  Identities=14%  Similarity=0.123  Sum_probs=26.5

Q ss_pred             CCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChH
Q 021008          122 PTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPS  158 (318)
Q Consensus       122 ~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~  158 (318)
                      |-+|+.||+||.|+++-.+.++.  |. .|+-+|.+++
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~--Gi~~V~V~Er~~~   36 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQA--GIGKVTLLESSSE   36 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC--CCCeEEEEeCCCC
Confidence            57999999999888876655553  74 7887777653

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.78  E-value=1.9  Score=36.28  Aligned_cols=101  Identities=14%  Similarity=0.078  Sum_probs=63.6

Q ss_pred             CCCEEEEEccCCChH---HHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---------
Q 021008          121 FPTKIAFIGSGPLPL---TSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---------  188 (318)
Q Consensus       121 ~~~rVL~IGsGplp~---tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---------  188 (318)
                      .++.++.-|++ .|+   .+..||+   .|++|+..|++++.++.   +.++   ++.++.++.+|+.+..         
T Consensus         5 ~gK~alITGas-~GIG~aia~~la~---~G~~V~~~~r~~~~~~~---~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~   74 (244)
T d1nffa_           5 TGKVALVSGGA-RGMGASHVRAMVA---EGAKVVFGDILDEEGKA---MAAE---LADAARYVHLDVTQPAQWKAAVDTA   74 (244)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHH---HHHH---TGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHH---HHHH---hhCcceEEEeecCCHHHHHHHHHHH
Confidence            56788888986 454   3345555   49999999999976554   4444   3467899999998732         


Q ss_pred             -cCCCCccEEEecccc-------CCChhHHHHHHH-----------HHHHhcc--CCeEEEEEc
Q 021008          189 -SALKDYEVVFLAALV-------GMDKDEKIRVID-----------HLAKYMA--PGALLMLRS  231 (318)
Q Consensus       189 -~~l~~fD~V~~aalv-------gm~~~~k~~vl~-----------~l~r~Lk--pGg~lv~r~  231 (318)
                       ...+..|+++..+-+       .++.+++.++++           .+.+.|+  ++|.++.-+
T Consensus        75 ~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~is  138 (244)
T d1nffa_          75 VTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINIS  138 (244)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             HHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecc
Confidence             223467887755433       224455555543           4555664  456666554

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.50  E-value=0.63  Score=37.62  Aligned_cols=67  Identities=18%  Similarity=0.186  Sum_probs=44.0

Q ss_pred             CCEEEEEcc-CCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---cCCCCccE
Q 021008          122 PTKIAFIGS-GPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---SALKDYEV  196 (318)
Q Consensus       122 ~~rVL~IGs-Gplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---~~l~~fD~  196 (318)
                      -+||+.+|+ |.+|-..+. |.+   .|.+|++++.+++..       ..  ....+++++.+|..+..   ..+.+.|+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~---~g~~V~~~~R~~~~~-------~~--~~~~~~~~~~gD~~d~~~l~~al~~~d~   70 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQ---AGYEVTVLVRDSSRL-------PS--EGPRPAHVVVGDVLQAADVDKTVAGQDA   70 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH---TTCEEEEEESCGGGS-------CS--SSCCCSEEEESCTTSHHHHHHHHTTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH---CcCEEEEEEcChhhc-------cc--ccccccccccccccchhhHHHHhcCCCE
Confidence            479999995 544444332 222   488999999987542       11  13467899999998743   23457898


Q ss_pred             EEec
Q 021008          197 VFLA  200 (318)
Q Consensus       197 V~~a  200 (318)
                      |+..
T Consensus        71 vi~~   74 (205)
T d1hdoa_          71 VIVL   74 (205)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            8754

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.47  E-value=4  Score=34.15  Aligned_cols=77  Identities=14%  Similarity=0.153  Sum_probs=54.5

Q ss_pred             CCCCEEEEEccCCChHH---HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--------
Q 021008          120 RFPTKIAFIGSGPLPLT---SIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--------  188 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~t---ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--------  188 (318)
                      -.|+.|+.-|++. |+-   +..||+   .|++|..+|++++.++...+....   .+.++.++.+|+.+..        
T Consensus         5 l~Gkv~lITGas~-GIG~~ia~~la~---~G~~V~l~~r~~~~l~~~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~   77 (244)
T d1yb1a_           5 VTGEIVLITGAGH-GIGRLTAYEFAK---LKSKLVLWDINKHGLEETAAKCKG---LGAKVHTFVVDCSNREDIYSSAKK   77 (244)
T ss_dssp             CTTCEEEEETTTS-HHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCc-HHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHH
Confidence            3577888888873 543   234444   499999999999988777666665   4578999999999732        


Q ss_pred             --cCCCCccEEEecccc
Q 021008          189 --SALKDYEVVFLAALV  203 (318)
Q Consensus       189 --~~l~~fD~V~~aalv  203 (318)
                        ...+..|+++..+-.
T Consensus        78 i~~~~g~idilinnag~   94 (244)
T d1yb1a_          78 VKAEIGDVSILVNNAGV   94 (244)
T ss_dssp             HHHHTCCCSEEEECCCC
T ss_pred             HHHHcCCCceeEeeccc
Confidence              244578887755533

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=83.44  E-value=1.9  Score=36.27  Aligned_cols=103  Identities=14%  Similarity=0.055  Sum_probs=66.5

Q ss_pred             CCCEEEEEccCCChHH---HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---------
Q 021008          121 FPTKIAFIGSGPLPLT---SIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---------  188 (318)
Q Consensus       121 ~~~rVL~IGsGplp~t---ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---------  188 (318)
                      .++.+|.-|++ .|+-   +..||+   .|++|+..|++++..+.+.+....    +.++.++.+|+.+..         
T Consensus         5 ~gK~alVTGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~   76 (251)
T d1zk4a1           5 DGKVAIITGGT-LGIGLAIATKFVE---EGAKVMITGRHSDVGEKAAKSVGT----PDQIQFFQHDSSDEDGWTKLFDAT   76 (251)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHCC----TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHhCC----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            46788888875 3443   344555   499999999999888776665543    468999999998721         


Q ss_pred             -cCCCCccEEEecccc-------CCChhHHHHHH-----------HHHHHhccC---CeEEEEEc
Q 021008          189 -SALKDYEVVFLAALV-------GMDKDEKIRVI-----------DHLAKYMAP---GALLMLRS  231 (318)
Q Consensus       189 -~~l~~fD~V~~aalv-------gm~~~~k~~vl-----------~~l~r~Lkp---Gg~lv~r~  231 (318)
                       ...+..|+++..+-.       .++.+++.+++           +.+.+.|+.   ||.++.-+
T Consensus        77 ~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~is  141 (251)
T d1zk4a1          77 EKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMS  141 (251)
T ss_dssp             HHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEEC
T ss_pred             HHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeee
Confidence             233578987755533       23445555544           455666654   56765443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=83.27  E-value=0.26  Score=38.69  Aligned_cols=32  Identities=6%  Similarity=0.076  Sum_probs=24.7

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCCh
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDP  157 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~  157 (318)
                      +|+.||+|+.|+++-...++  .|. .|+-+|-++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~--~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSE--AGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHH--TTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHh--CCCCcEEEEECCC
Confidence            69999999999987654444  375 699998764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.15  E-value=0.22  Score=42.10  Aligned_cols=34  Identities=21%  Similarity=0.131  Sum_probs=27.9

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA  159 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a  159 (318)
                      +|+.||+||.|+++-...+++  |..|+-+|.+++.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~--G~~v~vlE~~~~~   37 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTPD   37 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence            799999999988876655553  8999999998754

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=83.05  E-value=2.2  Score=35.41  Aligned_cols=75  Identities=11%  Similarity=0.176  Sum_probs=43.5

Q ss_pred             CCCCEEEEEccCCCh-HHHHH---HHHhCCCCcEEEE-EeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCc
Q 021008          120 RFPTKIAFIGSGPLP-LTSIV---LAINHLTTTCFDN-YDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDY  194 (318)
Q Consensus       120 ~~~~rVL~IGsGplp-~tai~---LA~~~~~ga~V~g-vDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~f  194 (318)
                      ++|-||..||+|..+ ..+-.   ..+...++.++++ .|.|++..+.+   .++ .+...--.|  .|..++. .....
T Consensus        14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~---~~~-~~~~~~~~~--~~~~~l~-~~~~i   86 (237)
T d2nvwa1          14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQT---IEQ-LQLKHATGF--DSLESFA-QYKDI   86 (237)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHH---HHH-TTCTTCEEE--SCHHHHH-HCTTC
T ss_pred             CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHH---HHh-cccccceee--cchhhcc-ccccc
Confidence            677899999999632 22211   1123347899987 59998655443   344 343322222  4444443 23478


Q ss_pred             cEEEecc
Q 021008          195 EVVFLAA  201 (318)
Q Consensus       195 D~V~~aa  201 (318)
                      |+|+++.
T Consensus        87 D~V~i~t   93 (237)
T d2nvwa1          87 DMIVVSV   93 (237)
T ss_dssp             SEEEECS
T ss_pred             ceeeccC
Confidence            9999875

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=83.02  E-value=0.31  Score=39.86  Aligned_cols=97  Identities=15%  Similarity=0.177  Sum_probs=56.5

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|..||.|.+|.....+++.+  |.+|.++|.....-...+..     +.    .. ..+..+   -++..|+|.+
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~~~-----~~----~~-~~~l~~---~l~~sD~v~~  106 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLAPF--DVHLHYTDRHRLPESVEKEL-----NL----TW-HATRED---MYPVCDVVTL  106 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGG--TCEEEEECSSCCCHHHHHHH-----TC----EE-CSSHHH---HGGGCSEEEE
T ss_pred             ccccceeeccccccchhhhhhhhcc--CceEEEEeeccccccccccc-----cc----cc-cCCHHH---HHHhccchhh
Confidence            4689999999998777666666543  89999999864322222211     11    11 112222   2346888876


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ..-.  +.+.+.=+=++....||||+.| +..++|
T Consensus       107 ~~pl--t~~T~~li~~~~l~~mk~ga~l-IN~aRG  138 (188)
T d2naca1         107 NCPL--HPETEHMINDETLKLFKRGAYI-VNTARG  138 (188)
T ss_dssp             CSCC--CTTTTTCBSHHHHTTSCTTEEE-EECSCG
T ss_pred             cccc--cccchhhhHHHHHHhCCCCCEE-EecCch
Confidence            5422  3333333344456899998766 455444

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=83.01  E-value=0.28  Score=35.39  Aligned_cols=72  Identities=13%  Similarity=0.115  Sum_probs=46.0

Q ss_pred             CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      +++||+.+|-|-.|+++..+..+  .|++|++.|..+..-..     ..   +...+.++.+...+  ..+..+|.|+++
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~--~g~~v~~~D~~~~~~~~-----~~---~~~~~~~~~~~~~~--~~~~~~d~vi~S   71 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRMTPPGL-----DK---LPEAVERHTGSLND--EWLMAADLIVAS   71 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEESSSSCTTG-----GG---SCTTSCEEESBCCH--HHHHHCSEEEEC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHH--CCCEEEEeeCCcCchhH-----HH---Hhhccceeecccch--hhhccCCEEEEC
Confidence            57899999999888887666655  49999999986542111     11   12334455554322  123478999987


Q ss_pred             cccC
Q 021008          201 ALVG  204 (318)
Q Consensus       201 alvg  204 (318)
                      --+.
T Consensus        72 PGi~   75 (93)
T d2jfga1          72 PGIA   75 (93)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            6553

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.98  E-value=5  Score=33.27  Aligned_cols=70  Identities=9%  Similarity=-0.044  Sum_probs=47.3

Q ss_pred             CCCEEEEEccCCChHH---HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc------CcCC
Q 021008          121 FPTKIAFIGSGPLPLT---SIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV------SSAL  191 (318)
Q Consensus       121 ~~~rVL~IGsGplp~t---ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l------~~~l  191 (318)
                      .++++|.-|++ .|+-   +..||+   .|++|+.+|++++.++..   .++ .   ..+.++..|+.+.      ....
T Consensus         4 ~GK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~---~~~-~---~~~~~~~~Dv~~~~~v~~~~~~~   72 (242)
T d1cyda_           4 SGLRALVTGAG-KGIGRDTVKALHA---SGAKVVAVTRTNSDLVSL---AKE-C---PGIEPVCVDLGDWDATEKALGGI   72 (242)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHH---HHH-S---TTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHH---HHh-c---CCCeEEEEeCCCHHHHHHHHHHc
Confidence            57899999986 3443   344554   499999999998765443   333 1   2477888999862      2345


Q ss_pred             CCccEEEecc
Q 021008          192 KDYEVVFLAA  201 (318)
Q Consensus       192 ~~fD~V~~aa  201 (318)
                      ++.|+++..+
T Consensus        73 g~iDilVnnA   82 (242)
T d1cyda_          73 GPVDLLVNNA   82 (242)
T ss_dssp             CCCSEEEECC
T ss_pred             CCCeEEEECC
Confidence            6789877544

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.91  E-value=1.5  Score=33.82  Aligned_cols=80  Identities=13%  Similarity=0.041  Sum_probs=46.6

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL  202 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal  202 (318)
                      .||.+||+|.+|.+-..-..+  .|..|++.|.++......+..  . .+.       ..+..++   ....|+|++.- 
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~--~g~~v~~~~~~~~~~~~~~~~--~-~~~-------~~~~~e~---~~~~diIi~~v-   64 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRS--RGVEVVTSLEGRSPSTIERAR--T-VGV-------TETSEED---VYSCPVVISAV-   64 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH--TTCEEEECCTTCCHHHHHHHH--H-HTC-------EECCHHH---HHTSSEEEECS-
T ss_pred             CEEEEEcHHHHHHHHHHHHHH--CCCeEEEEcCchhHHHHHhhh--c-ccc-------cccHHHH---HhhcCeEEEEe-
Confidence            489999999887764322222  478999999887665544322  2 111       1223333   23689998764 


Q ss_pred             cCCChhHHHHHHHHHHHhc
Q 021008          203 VGMDKDEKIRVIDHLAKYM  221 (318)
Q Consensus       203 vgm~~~~k~~vl~~l~r~L  221 (318)
                         +...-.+++..+...+
T Consensus        65 ---~~~~~~~~~~~~~~~~   80 (152)
T d1i36a2          65 ---TPGVALGAARRAGRHV   80 (152)
T ss_dssp             ---CGGGHHHHHHHHHTTC
T ss_pred             ---cCchHHHHHHhhcccC
Confidence               3334455666665544

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=82.88  E-value=1.7  Score=36.59  Aligned_cols=57  Identities=14%  Similarity=0.160  Sum_probs=40.8

Q ss_pred             HhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc
Q 021008          105 KLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS  169 (318)
Q Consensus       105 ~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~  169 (318)
                      .|++.-+...    ..++..|||-=+|. |.|+ ..|..  .|-+++|+|+|+++++.|++.+..
T Consensus       238 ~L~~rlI~~~----s~~gdiVlDpF~GS-GTT~-~AA~~--lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         238 KLPEFFIRML----TEPDDLVVDIFGGS-NTTG-LVAER--ESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHHH----CCTTCEEEETTCTT-CHHH-HHHHH--TTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHhhhhc----ccCCCEEEecCCCC-cHHH-HHHHH--cCCcEEEEeCCHHHHHHHHHHHHh
Confidence            4554444433    37889999876663 3444 44544  499999999999999999887765

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=82.59  E-value=0.31  Score=39.53  Aligned_cols=32  Identities=19%  Similarity=0.047  Sum_probs=27.3

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP  157 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~  157 (318)
                      -|+.||+||.|+++...|.++  |.+|+-||-++
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~--G~kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMY--GQKCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT--TCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCEEEEEeccC
Confidence            489999999999998888764  89999999763

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=82.39  E-value=2.9  Score=36.03  Aligned_cols=84  Identities=10%  Similarity=-0.043  Sum_probs=53.6

Q ss_pred             cCCCCEEEEEccCCChHHHHHHHHhCC-CCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---cCCCCc
Q 021008          119 SRFPTKIAFIGSGPLPLTSIVLAINHL-TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---SALKDY  194 (318)
Q Consensus       119 ~~~~~rVL~IGsGplp~tai~LA~~~~-~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---~~l~~f  194 (318)
                      .+++++||..|+.  |+-.-.+++.++ .|..|+++..+....+.-++.... ........++.+|+.+..   ......
T Consensus         8 ~~~gk~VlVTG~s--GfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~   84 (342)
T d1y1pa1           8 LPEGSLVLVTGAN--GFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDA-KYPGRFETAVVEDMLKQGAYDEVIKGA   84 (342)
T ss_dssp             SCTTCEEEEETTT--SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH-HSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred             CCCcCEEEEECCC--CHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhc-cccccccEEEeccccchhhhhhhcccc
Confidence            3778999999985  555555555322 389999999988766555444433 334456677889987642   233467


Q ss_pred             cEEEe-ccccCC
Q 021008          195 EVVFL-AALVGM  205 (318)
Q Consensus       195 D~V~~-aalvgm  205 (318)
                      |+|+. ++.+++
T Consensus        85 ~~v~~~a~~~~~   96 (342)
T d1y1pa1          85 AGVAHIASVVSF   96 (342)
T ss_dssp             SEEEECCCCCSC
T ss_pred             hhhhhhcccccc
Confidence            87764 444443

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.26  E-value=0.3  Score=39.26  Aligned_cols=31  Identities=13%  Similarity=0.105  Sum_probs=26.3

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCC
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDID  156 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid  156 (318)
                      -|+.||+||.|+++...|.+.  |.+|.-||..
T Consensus         5 DviIIGgGpAGl~aA~~aar~--G~~V~viE~~   35 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQL--GLKTALIEKY   35 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCeEEEEecc
Confidence            489999999999997777764  8899999964

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=81.98  E-value=3  Score=34.70  Aligned_cols=74  Identities=7%  Similarity=0.056  Sum_probs=48.8

Q ss_pred             CCCEEEEEcc-C--CChHH-HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc---------
Q 021008          121 FPTKIAFIGS-G--PLPLT-SIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV---------  187 (318)
Q Consensus       121 ~~~rVL~IGs-G--plp~t-ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l---------  187 (318)
                      +++++|..|+ |  .+|.. +..||+   .|++|+..|++++..+.++++...    +....+...|+.+-         
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~---~Ga~V~i~~r~~~~~~~~~~l~~~----~~~~~~~~~d~~~~~~~~~~~~~   76 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFN---QGATLAFTYLNESLEKRVRPIAQE----LNSPYVYELDVSKEEHFKSLYNS   76 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHT---TTCEEEEEESSTTTHHHHHHHHHH----TTCCCEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHhh----CCceeEeeecccchhhHHHHHHH
Confidence            5899999994 2  25654 344443   599999999999888888877765    23455667777652         


Q ss_pred             -CcCCCCccEEEecc
Q 021008          188 -SSALKDYEVVFLAA  201 (318)
Q Consensus       188 -~~~l~~fD~V~~aa  201 (318)
                       ....+..|+++..+
T Consensus        77 ~~~~~g~id~lV~na   91 (274)
T d2pd4a1          77 VKKDLGSLDFIVHSV   91 (274)
T ss_dssp             HHHHTSCEEEEEECC
T ss_pred             HHHHcCCCCeEEeec
Confidence             12335677666433

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.93  E-value=0.31  Score=39.93  Aligned_cols=31  Identities=19%  Similarity=0.144  Sum_probs=26.3

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCC
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDID  156 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid  156 (318)
                      -|+.||+||.|+++-.-|.++  |.+|.-||..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~--G~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKF--DKKVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGG--CCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCeEEEEecc
Confidence            488999999999998777764  9999999944

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.80  E-value=0.59  Score=36.17  Aligned_cols=85  Identities=13%  Similarity=0.241  Sum_probs=51.8

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      +..++||.|||||.=     +-+         +++.|=..+..++.+-+  .  +-++-.+..+-..+..+..--|-+|+
T Consensus         2 t~~kkvlViGsGp~r-----IGq---------~~EfDy~~~~a~~aLk~--~--g~~~IliN~NPeTVstd~d~aD~lYf   63 (121)
T d1a9xa4           2 TDREKIMVLGGGPNR-----IGQ---------GIEFDYCCVHASLALRE--D--GYETIMVNCNPETVSTDYDTSDRLYF   63 (121)
T ss_dssp             SSSCEEEEECCCSCB-----TTB---------CHHHHHHHHHHHHHHHH--T--TCEEEEECCCTTSSTTSTTSSSEEEC
T ss_pred             CCCCEEEEECCCcCc-----ccc---------cchhhHHHHHHHHHHHh--c--CCeEEEEecChhhhhcChhhcCceEE
Confidence            356899999999841     211         22334444444444433  2  34455666666666555556788887


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLML  229 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~  229 (318)
                      .-+   .    .+.+.++.+.=+|.|+++-
T Consensus        64 epl---t----~e~v~~Ii~~E~p~~ii~~   86 (121)
T d1a9xa4          64 EPV---T----LEDVLEIVRIEKPKGVIVQ   86 (121)
T ss_dssp             CCC---S----HHHHHHHHHHHCCSEEECS
T ss_pred             ccC---C----HHHHHHHHHHhCCCEEEee
Confidence            764   2    3446666788899998754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=81.51  E-value=1.8  Score=36.42  Aligned_cols=74  Identities=9%  Similarity=0.036  Sum_probs=50.8

Q ss_pred             CCCEEEEEccCCChHH---HHHHHHhCCCCcEEEEEeCChHHHHHH-HHHhhcCCCCCCCeEEEEccccccC--------
Q 021008          121 FPTKIAFIGSGPLPLT---SIVLAINHLTTTCFDNYDIDPSANSKA-LSLVSSDPDLSTRMFFHTTDIMNVS--------  188 (318)
Q Consensus       121 ~~~rVL~IGsGplp~t---ai~LA~~~~~ga~V~gvDid~~ai~~A-r~~~~~~~gl~~ri~f~~gDa~~l~--------  188 (318)
                      .++++|.-|++ .|+-   +..||+   .|++|+.+|++++..+.. .++.+.   .+.++.++.+|+.+..        
T Consensus         8 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~~~~~---~g~~~~~~~~Dv~~~~~v~~~~~~   80 (260)
T d1h5qa_           8 VNKTIIVTGGN-RGIGLAFTRAVAA---AGANVAVIYRSAADAVEVTEKVGKE---FGVKTKAYQCDVSNTDIVTKTIQQ   80 (260)
T ss_dssp             TTEEEEEETTT-SHHHHHHHHHHHH---TTEEEEEEESSCTTHHHHHHHHHHH---HTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHH---hCCceEEEEccCCCHHHHHHHHHH
Confidence            57888888886 4543   345555   499999999998766544 444444   3467899999998732        


Q ss_pred             --cCCCCccEEEecc
Q 021008          189 --SALKDYEVVFLAA  201 (318)
Q Consensus       189 --~~l~~fD~V~~aa  201 (318)
                        ...+..|+++..+
T Consensus        81 ~~~~~g~iDilVnnA   95 (260)
T d1h5qa_          81 IDADLGPISGLIANA   95 (260)
T ss_dssp             HHHHSCSEEEEEECC
T ss_pred             HHHHhCCCcEecccc
Confidence              2345789777554

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=81.44  E-value=0.39  Score=39.79  Aligned_cols=93  Identities=16%  Similarity=0.201  Sum_probs=56.6

Q ss_pred             CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008          120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL  199 (318)
Q Consensus       120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~  199 (318)
                      -.+++|..||.|.+|-....+++.+  |.+|.++|..+.            .+....+.+  .+..++   +...|+|.+
T Consensus        43 l~~ktvgIiG~G~IG~~va~~l~~f--g~~v~~~d~~~~------------~~~~~~~~~--~~l~~l---~~~~D~v~~  103 (199)
T d1dxya1          43 LGQQTVGVMGTGHIGQVAIKLFKGF--GAKVIAYDPYPM------------KGDHPDFDY--VSLEDL---FKQSDVIDL  103 (199)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCC------------SSCCTTCEE--CCHHHH---HHHCSEEEE
T ss_pred             ccceeeeeeeccccccccccccccc--ceeeeccCCccc------------hhhhcchhH--HHHHHH---HHhccccee
Confidence            3568999999999887776777654  999999998642            111122333  222232   236788886


Q ss_pred             ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008          200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG  234 (318)
Q Consensus       200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g  234 (318)
                      ..-  .+.+.+--+=++..+.||+|+.| +..++|
T Consensus       104 ~~p--lt~~T~~li~~~~l~~mk~~a~l-IN~aRG  135 (199)
T d1dxya1         104 HVP--GIEQNTHIINEAAFNLMKPGAIV-INTARP  135 (199)
T ss_dssp             CCC--CCGGGTTSBCHHHHHHSCTTEEE-EECSCT
T ss_pred             eec--ccccccccccHHHhhccCCceEE-EecccH
Confidence            542  23333322333455889998865 555555

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.35  E-value=0.33  Score=39.20  Aligned_cols=32  Identities=16%  Similarity=0.143  Sum_probs=27.1

Q ss_pred             EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008          124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP  157 (318)
Q Consensus       124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~  157 (318)
                      -|+.||+||.|+++-..|.++  |.+|+-||-.+
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~--G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH--TCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCcEEEEEecC
Confidence            589999999999987777764  89999999764

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.27  E-value=2.1  Score=36.18  Aligned_cols=104  Identities=8%  Similarity=-0.044  Sum_probs=67.2

Q ss_pred             CCCEEEEEccCCChH---HHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---------
Q 021008          121 FPTKIAFIGSGPLPL---TSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---------  188 (318)
Q Consensus       121 ~~~rVL~IGsGplp~---tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---------  188 (318)
                      ++++++.-|++ .|+   .+..||+   .|++|+.+|++++.++...+....   .+.++.++.+|+.+..         
T Consensus         7 kgK~alVTGas-~GIG~aiA~~la~---~Ga~V~~~~r~~~~l~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d1xq1a_           7 KAKTVLVTGGT-KGIGHAIVEEFAG---FGAVIHTCARNEYELNECLSKWQK---KGFQVTGSVCDASLRPEREKLMQTV   79 (259)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHh---cCCceEEEeccCCCHHHHHHHHHHH
Confidence            68899999986 455   3445555   499999999999888877666665   2357999999998621         


Q ss_pred             -cCC-CCccEEEecccc-------CCChhHHHHHH-----------HHHHHhcc--CCeEEEEEc
Q 021008          189 -SAL-KDYEVVFLAALV-------GMDKDEKIRVI-----------DHLAKYMA--PGALLMLRS  231 (318)
Q Consensus       189 -~~l-~~fD~V~~aalv-------gm~~~~k~~vl-----------~~l~r~Lk--pGg~lv~r~  231 (318)
                       ... +..|+++..+-+       .++.+++.+++           +.+.+.|+  .+|.++.-+
T Consensus        80 ~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~is  144 (259)
T d1xq1a_          80 SSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMS  144 (259)
T ss_dssp             HHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred             HHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccc
Confidence             122 368887754432       22344444443           44555664  356665544

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.16  E-value=0.51  Score=39.08  Aligned_cols=35  Identities=31%  Similarity=0.453  Sum_probs=26.1

Q ss_pred             CEEEEEccCCChHHHHHHHHh-CCCCcEEEEEeCCh
Q 021008          123 TKIAFIGSGPLPLTSIVLAIN-HLTTTCFDNYDIDP  157 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~-~~~ga~V~gvDid~  157 (318)
                      .||+.||+||.|+++-..|.+ ...+..|+-||-+.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            389999999999987655433 33467899999653

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=80.25  E-value=1.1  Score=35.10  Aligned_cols=89  Identities=10%  Similarity=0.272  Sum_probs=48.9

Q ss_pred             CEEEEEccCCChHHH-HHHHHhCCCCcEEEE-EeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008          123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDN-YDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA  200 (318)
Q Consensus       123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~g-vDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a  200 (318)
                      .||..||||.+|... +-..+. .++..+++ +|.+++..   +++... .+.    .+ ..+..++.   .+.|+|+++
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~-~~~~~i~~v~d~~~~~~---~~~~~~-~~~----~~-~~~~~~l~---~~~D~V~I~   68 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAA-ASDWTLQGAWSPTRAKA---LPICES-WRI----PY-ADSLSSLA---ASCDAVFVH   68 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHS-CSSEEEEEEECSSCTTH---HHHHHH-HTC----CB-CSSHHHHH---TTCSEEEEC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHh-CCCcEEEEEEechhHhh---hhhhhc-ccc----cc-cccchhhh---hhccccccc
Confidence            389999999766432 222323 47888776 47887543   333333 222    12 12333332   368999987


Q ss_pred             cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008          201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS  231 (318)
Q Consensus       201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~  231 (318)
                      .    +.....++.   ...|+.|=-+++.-
T Consensus        69 t----p~~~h~~~~---~~al~~gk~V~~EK   92 (164)
T d1tlta1          69 S----STASHFDVV---STLLNAGVHVCVDK   92 (164)
T ss_dssp             S----CTTHHHHHH---HHHHHTTCEEEEES
T ss_pred             c----cchhccccc---cccccccceeeccc
Confidence            6    223334443   44566775565543

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.12  E-value=0.56  Score=37.56  Aligned_cols=35  Identities=14%  Similarity=0.142  Sum_probs=28.9

Q ss_pred             CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008          123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP  157 (318)
Q Consensus       123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~  157 (318)
                      +||+.||+|+.|+.+..-++++.++.+|+-++.++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            58999999998988776666666899999998654