Citrus Sinensis ID: 021051

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MDSTDKFTNAFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPLMQV
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHEEccccccEEc
Coil and Loop (DISEMBL)
mdstdkftnafksspEMEKFLCDrlvdptqpiSERFRALFSLrnlkgpgprdaLIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAiglesnipllknslvsdpaqEVRETCELALERIEKLKasgsdgssmterspfmsvdpaapasscssvDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRnvnehpmvRHEAAEALgsiaddqsIGLLkefakdpepivsQSCEVALSMLEYEQLEKSFEYLFMQAPLMQV
Flexible Loop (DISEMBL)
mdstdkftnafksspemeKFLCDRLVDPTQPISERFRALFslrnlkgpgprDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKlkasgsdgssmterSPFMSVDpaapasscssVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPLMQV
Low Complexity Region (SEG)
MDSTDKFTNAFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHeaaealgaigleSNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPLMQV
Disordered region (IsUnstruct)
*******************FLCDRLVDPTQPISERFRALFSLRNL*****************NLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLV*****************************************************MLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNE***********LGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQ******
Disordered Region (DISOPRED)
*DSTDKF***********KFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPLM**
Disordered Region (DISEMBL)
********NAFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLK*************PFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPLMQV
Disordered Region (DISPRO)
*****KFTNAFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPLMQ*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSTDKFTNAFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPxxxxxxxxxxxxxxxxxxxxxGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPLMQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
Q94JW0	314	Deoxyhypusine hydroxylase	yes	no	0.946	0.958	0.788	1e-135
Q2QXB3	319	Deoxyhypusine hydroxylase	yes	no	0.968	0.965	0.751	1e-127
Q2QLW3	302	Deoxyhypusine hydroxylase	no	no	0.937	0.986	0.738	1e-122
Q5ZIP3	299	Deoxyhypusine hydroxylase	yes	no	0.871	0.926	0.521	1e-70
Q99LN9	302	Deoxyhypusine hydroxylase	yes	no	0.874	0.920	0.517	4e-70
Q5PPJ4	302	Deoxyhypusine hydroxylase	yes	no	0.874	0.920	0.510	1e-69
Q9BU89	302	Deoxyhypusine hydroxylase	yes	no	0.871	0.917	0.517	1e-69
Q7ZUX6	305	Deoxyhypusine hydroxylase	yes	no	0.883	0.921	0.5	2e-67
Q0VC53	303	Deoxyhypusine hydroxylase	yes	no	0.874	0.917	0.496	5e-67
Q66KT3	303	Deoxyhypusine hydroxylase	N/A	no	0.871	0.914	0.485	2e-64

>sp|Q94JW0|DOHH_ARATH Deoxyhypusine hydroxylase OS=Arabidopsis thaliana GN=At3g58180 PE=2 SV=1

 Score =  480 bits (1236), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/302 (78%), Positives = 266/302 (88%), Gaps = 1/302 (0%)

Query: 17  MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQM 76
           +EKFLC+RLVD +QPISERFRALFSLRNLKGPGPR+ALI A++DSSNLLAHEAAFALGQM
Sbjct: 13  LEKFLCERLVDQSQPISERFRALFSLRNLKGPGPRNALILASRDSSNLLAHEAAFALGQM 72

Query: 77  QDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCEL 136
           QDAEAIPALE+VLND SLHPIVRHEAAEALGAIGL  N+ +LK SL SDPAQEVRETCEL
Sbjct: 73  QDAEAIPALESVLNDMSLHPIVRHEAAEALGAIGLAGNVNILKKSLSSDPAQEVRETCEL 132

Query: 137 ALERIEKL-KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAA 195
           AL+RIE +      + SS TE+SPFMSVDPA PA+S SSV  LR+VLL E KGMYERYAA
Sbjct: 133 ALKRIEDMSNVDAENQSSTTEKSPFMSVDPAGPAASFSSVHQLRQVLLDETKGMYERYAA 192

Query: 196 LFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMV 255
           LFALRNHGG+EAVSAI+DSL A+SALL+HEVAYVLGQLQ+K A A LS VLR+VNEHPMV
Sbjct: 193 LFALRNHGGEEAVSAIVDSLSASSALLRHEVAYVLGQLQSKTALATLSKVLRDVNEHPMV 252

Query: 256 RHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPL 315
           RHEAAEALGSIAD+QSI LL+EF+KDPEPIV+QSCEVALSMLE+E   KSFE+ F Q PL
Sbjct: 253 RHEAAEALGSIADEQSIALLEEFSKDPEPIVAQSCEVALSMLEFENSGKSFEFFFTQDPL 312

Query: 316 MQ 317
           + 
Sbjct: 313 VH 314

Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: 2EC: 9

>sp|Q2QXB3|DOHH1_ORYSJ Deoxyhypusine hydroxylase-A OS=Oryza sativa subsp. japonica GN=Os12g0163300 PE=2 SV=1

 Score =  455 bits (1171), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/310 (75%), Positives = 261/310 (84%), Gaps = 2/310 (0%)

Query: 8   TNAFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAH 67
           ++ F  +PEMEKFLCD L+D  QPI+ERFRALFSLRNL G GPR AL++A +DSSNLLAH
Sbjct: 9   SSTFGPTPEMEKFLCDLLLDTAQPIAERFRALFSLRNLHGDGPRCALLQAARDSSNLLAH 68

Query: 68  EAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPA 127
           EAAFALGQMQDAEAIPALEAVL D SLHPIVRHEAAEALGAIGLE +IPLL+ SL +DPA
Sbjct: 69  EAAFALGQMQDAEAIPALEAVLKDLSLHPIVRHEAAEALGAIGLEKSIPLLEESLAADPA 128

Query: 128 QEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEK 187
            EV+ETCELAL RIE+ K +G   S  T  SPF+SVDPA PA    SV  LRE+LL E++
Sbjct: 129 VEVQETCELALRRIEQQKNAGVSES--TTISPFLSVDPALPAKQGLSVHQLREILLNEQE 186

Query: 188 GMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLR 247
            MYERYAALFALRN   D AVSAI+ +LGA SALLKHEVAYVLGQLQNKAAS ALS VL+
Sbjct: 187 SMYERYAALFALRNDSRDAAVSAIVAALGAKSALLKHEVAYVLGQLQNKAASDALSTVLK 246

Query: 248 NVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFE 307
           NV+EHPMVRHEAAEALGSIAD +SI LL+EFAKDPEPIVSQSCEVALSMLEYE+  KSFE
Sbjct: 247 NVDEHPMVRHEAAEALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEYERSGKSFE 306

Query: 308 YLFMQAPLMQ 317
           +LF+Q P +Q
Sbjct: 307 FLFLQTPGVQ 316

Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 2

EC: 9

>sp|Q2QLW3|DOHH2_ORYSJ Deoxyhypusine hydroxylase-B OS=Oryza sativa subsp. japonica GN=Os12g0626100 PE=2 SV=1

 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/302 (73%), Positives = 254/302 (84%), Gaps = 4/302 (1%)

Query: 17  MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQM 76
           ME FLCDRL+D  QPI+ERFRALFSLRNL+G  PR AL++A +DSSNLLAHEAAFALGQM
Sbjct: 1   MEGFLCDRLLDAAQPIAERFRALFSLRNLRGDAPRRALLQAARDSSNLLAHEAAFALGQM 60

Query: 77  QDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCEL 136
           QDAEAIPALEAVL D SLHPIVRHEAAEALGAIGLE +I LL+ SL  DPA EV+ETCEL
Sbjct: 61  QDAEAIPALEAVLKDLSLHPIVRHEAAEALGAIGLEKSISLLEESLAVDPAVEVQETCEL 120

Query: 137 ALERIEKLK-ASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAA 195
           A+ RIE+ K  SG + +++   SPF+SVDPA PA     V+ LRE+LL E++ MYERYAA
Sbjct: 121 AIRRIEEQKNTSGVESATV---SPFLSVDPALPAKQGLPVEQLRELLLNEQESMYERYAA 177

Query: 196 LFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMV 255
           LFALRN  GD AVSAI+ +LG  SALL+HEVAYVLGQLQNKAAS ALS VL+NV+EHPMV
Sbjct: 178 LFALRNDSGDAAVSAIVAALGVKSALLRHEVAYVLGQLQNKAASDALSTVLKNVDEHPMV 237

Query: 256 RHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPL 315
           RHEAAEALGSIAD +SI LL+EFAKDPEPIVSQSCEVALSMLEYE+  K+FE+LF Q P 
Sbjct: 238 RHEAAEALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEYERSGKAFEFLFPQTPQ 297

Query: 316 MQ 317
           +Q
Sbjct: 298 VQ 299

Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 2

EC: 9

>sp|Q5ZIP3|DOHH_CHICK Deoxyhypusine hydroxylase OS=Gallus gallus GN=DOHH PE=2 SV=1

 Score =  266 bits (681), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/284 (52%), Positives = 186/284 (65%), Gaps = 7/284 (2%)

Query: 25  LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
           L+D  QP+  RFRALF+LRNL GP   D ++R   DSS LL HE AF LGQM+D  AIPA
Sbjct: 14  LLDAAQPLPARFRALFTLRNLGGPAAIDCIVRGFADSSALLKHELAFCLGQMRDRAAIPA 73

Query: 85  LEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
           L  VL D    P+VRHEA EALGAIG    + +L+     DP  EV ETC+LA+ R+E L
Sbjct: 74  LLGVLQDSQQEPMVRHEAGEALGAIGDPEVLDVLRR-YSEDPVVEVAETCQLAVRRLEWL 132

Query: 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
           +  G +  S    SP+ SVDPA PA   + V  LR VLL E + +++RY A+FALRN GG
Sbjct: 133 QEHGEEPGS----SPYRSVDPAPPAEE-TDVATLRAVLLDESRPLFDRYRAMFALRNLGG 187

Query: 205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
            +AV A+ D L A SAL +HE+ YVLGQ+Q++A    L+  LR+  E+PMVRHE AEALG
Sbjct: 188 RDAVLALADGLRAGSALFRHEIGYVLGQMQDEACVPQLTAALRSRAENPMVRHECAEALG 247

Query: 265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
           SIA    +  L+ FA+D E +V +SCEVAL M EYE     F+Y
Sbjct: 248 SIARPSCLETLRAFAQDEERVVRESCEVALDMYEYEN-GPQFQY 290

Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 2

EC: 9

>sp|Q99LN9|DOHH_MOUSE Deoxyhypusine hydroxylase OS=Mus musculus GN=Dohh PE=2 SV=2

 Score =  265 bits (676), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 147/284 (51%), Positives = 183/284 (64%), Gaps = 6/284 (2%)

Query: 25  LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
           LVDP QP+  RFRALF+LR L GP     + R  +DSS LL HE A+ LGQM+DA AIP 
Sbjct: 14  LVDPKQPLQARFRALFTLRGLGGPDAISWISRGFEDSSALLKHELAYCLGQMRDARAIPV 73

Query: 85  LEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
           L  VL D S  P+VRHEA EALGAIG    + LLK    +DP  EV ETC+LA+ R+E L
Sbjct: 74  LADVLQDTSQEPMVRHEAGEALGAIGNPEVLGLLKQ-YSTDPVVEVAETCQLAVGRLEWL 132

Query: 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
           +    + +      P++SVDPA PA+    V  LRE LL E + ++ERY A+FALRN GG
Sbjct: 133 QQHPGEATCA---GPYLSVDPAPPAAE-QDVGRLREALLDEARPLFERYRAMFALRNVGG 188

Query: 205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
            EA  A+ + L   SAL +HEV YVLGQLQ++AA   L+  L    E PMVRHE AEALG
Sbjct: 189 KEAALALAEGLQCGSALFRHEVGYVLGQLQHEAAVPGLAATLARTTESPMVRHECAEALG 248

Query: 265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
           +IA    +  L+E  +DPE +V +SCEVAL M EYE   + F+Y
Sbjct: 249 AIARPACLAALREHIEDPEQVVRESCEVALDMYEYES-SQDFQY 291

Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 2

EC: 9

>sp|Q5PPJ4|DOHH_RAT Deoxyhypusine hydroxylase OS=Rattus norvegicus GN=Dohh PE=2 SV=1

 Score =  263 bits (673), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 145/284 (51%), Positives = 184/284 (64%), Gaps = 6/284 (2%)

Query: 25  LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
           LVD TQP+  RFRALF+LR L GP     + R  +DSS LL HE A+ LGQM+D  AIP 
Sbjct: 14  LVDSTQPLQARFRALFTLRGLGGPDAISWISRGFEDSSALLKHELAYCLGQMRDPRAIPV 73

Query: 85  LEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
           L +VL D +  P+VRHEA EALGAIG    + LLK    +DP  EV ETC+LA+ R+E L
Sbjct: 74  LVSVLQDRNQEPMVRHEAGEALGAIGNPKVLGLLKQ-YSTDPVVEVAETCQLAVRRLEWL 132

Query: 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
           +    + +      P++SVDPA PA+    V  LRE LL E + ++ERY A+FALRN GG
Sbjct: 133 QQHPGEATCA---GPYLSVDPAPPAAE-GDVGRLRETLLDEAQPLFERYRAMFALRNVGG 188

Query: 205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
            EA  A+ + L   SAL +HEV YVLGQLQ++AA + L+  L    E PMVRHE AEALG
Sbjct: 189 KEAALALAEGLKCGSALFRHEVGYVLGQLQHEAAVSELAATLARTTESPMVRHECAEALG 248

Query: 265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
           +IA    +  L+E+  DPE +V +SCEVAL M EYE   + F+Y
Sbjct: 249 AIARPACLAALREYITDPERVVRESCEVALDMYEYEN-GQDFQY 291

Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 2

EC: 9

>sp|Q9BU89|DOHH_HUMAN Deoxyhypusine hydroxylase OS=Homo sapiens GN=DOHH PE=1 SV=1

 Score =  263 bits (673), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/284 (51%), Positives = 185/284 (65%), Gaps = 7/284 (2%)

Query: 25  LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
           LVDP QP+  RFRALF+LR L GPG    + +A  D S LL HE A+ LGQMQDA AIP 
Sbjct: 14  LVDPKQPLQARFRALFTLRGLGGPGAIAWISQAFDDDSALLKHELAYCLGQMQDARAIPM 73

Query: 85  LEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
           L  VL D    P+VRHEA EALGAIG    + +LK    SDP  EV ETC+LA+ R+E L
Sbjct: 74  LVDVLQDTRQEPMVRHEAGEALGAIGDPEVLEILKQ-YSSDPVIEVAETCQLAVRRLEWL 132

Query: 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
           +  G + ++     P++SVDPA PA     V  LRE LL E + ++ERY A+FALRN GG
Sbjct: 133 QQHGGEPAA----GPYLSVDPAPPAEE-RDVGRLREALLDESRPLFERYRAMFALRNAGG 187

Query: 205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
           +EA  A+ + L   SAL +HEV YVLGQLQ++AA   L+  L    E+PMVRHE AEALG
Sbjct: 188 EEAALALAEGLHCGSALFRHEVGYVLGQLQHEAAVPQLAAALARCTENPMVRHECAEALG 247

Query: 265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
           +IA    +  L+  A DPE +V +SCEVAL M E+E   ++F+Y
Sbjct: 248 AIARPACLAALQAHADDPERVVRESCEVALDMYEHET-GRAFQY 290

Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 2

EC: 9

>sp|Q7ZUX6|DOHH_DANRE Deoxyhypusine hydroxylase OS=Danio rerio GN=dohh PE=2 SV=1

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/284 (50%), Positives = 182/284 (64%), Gaps = 3/284 (1%)

Query: 25  LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
           LV+  Q ++ RFRALF+LRNL G      +  A  D S LL HE A+ LGQMQD  AIP 
Sbjct: 14  LVNTKQDLTTRFRALFTLRNLGGAEAVKWISEAFVDESALLKHELAYCLGQMQDESAIPT 73

Query: 85  LEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
           LEAVL D +  P+VRHEA EALGAIG    + LLK     DP  EV ETC+LA++R+E L
Sbjct: 74  LEAVLKDTNQEPMVRHEAGEALGAIGNPKVLELLKK-YAEDPVIEVAETCQLAVKRLEWL 132

Query: 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
              G      T+ +P+ SVDPA PA    SV  LR  LL E   +++RY A+FALRN G 
Sbjct: 133 MNGGEQTKDGTDENPYCSVDPAPPAQR-KSVPELRTQLLDETLPLFDRYRAMFALRNLGT 191

Query: 205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
           +EAV A+ D L  +SAL +HE+ YVLGQ+Q++A+   L   L  ++E+ MVRHE AEALG
Sbjct: 192 EEAVLALGDGLQCSSALFRHEIGYVLGQIQHEASIPQLQAALEKMDENAMVRHECAEALG 251

Query: 265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
           SI  +  + +L+ + KD E +V +SCEVAL MLEYE     F+Y
Sbjct: 252 SIGKEPCVQILERYRKDQERVVKESCEVALDMLEYEN-SSQFQY 294

Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 2

EC: 9

>sp|Q0VC53|DOHH_BOVIN Deoxyhypusine hydroxylase OS=Bos taurus GN=DOHH PE=1 SV=1

 Score =  254 bits (650), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 141/284 (49%), Positives = 180/284 (63%), Gaps = 6/284 (2%)

Query: 25  LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
           LVDP QP+  RFRALF+LR L GP     + RA  D S LL HE A+ LGQMQD  AIP 
Sbjct: 14  LVDPGQPLQARFRALFTLRGLGGPVAISWISRAFDDDSALLKHELAYCLGQMQDRRAIPV 73

Query: 85  LEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
           L  VL D    P+VRHEA EALGAIG    + +LK    +DP  EV ETC+LA+ R+E L
Sbjct: 74  LLDVLRDTRQEPMVRHEAGEALGAIGDPEVLEILKQ-YSTDPVVEVAETCQLAVRRLEWL 132

Query: 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
           +  G + +    R P++SVDPA PA     +  LRE LL E + +++RY A+FALR+ GG
Sbjct: 133 QQHGGESAV---RGPYLSVDPAPPAEE-RDLGQLREALLDEARPLFDRYRAMFALRDAGG 188

Query: 205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
            EA  A+ + L   SAL +HE+ YVLGQ+Q++AA   L+  L    E+PMVRHE AEALG
Sbjct: 189 KEAALALAEGLRCGSALFRHEIGYVLGQMQHEAAVPQLAAALAQPTENPMVRHECAEALG 248

Query: 265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
           +IA    +  L+    DPE +V +SCEVAL M EYE    +F+Y
Sbjct: 249 AIARPACLAALRAHVADPERVVRESCEVALDMYEYET-GSTFQY 291

Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 2

EC: 9

>sp|Q66KT3|DOHH_XENLA Deoxyhypusine hydroxylase OS=Xenopus laevis GN=dohh PE=2 SV=1

 Score =  246 bits (627), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/284 (48%), Positives = 177/284 (62%), Gaps = 7/284 (2%)

Query: 25  LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
           L+DP +P+  RFRALF+LRNL G    D + R  +D S LL HE A+ LGQM+D  A+P 
Sbjct: 16  LIDPGKPLPLRFRALFTLRNLGGAEAIDCIGRGFQDESALLKHELAYCLGQMKDRRALPV 75

Query: 85  LEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
           L+ VL D    P+VRHEA EALGAIG    + LL+     DP  EV ETC+LA+ RIE L
Sbjct: 76  LKQVLQDRQQEPMVRHEAGEALGAIGDPEVLELLRE-YAQDPVIEVAETCQLAVSRIEWL 134

Query: 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
           + +        + +P++SVDPA PA     V  LR  LL E   ++ RY A+FALRN GG
Sbjct: 135 QKN----PDSPDTNPYLSVDPAPPAEE-KDVPTLRATLLDETCPLFHRYRAMFALRNIGG 189

Query: 205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
           +EAV A+ D L    +L +HE+ YVLGQ+Q+KAA   LS  L    E+PMVRHE AEALG
Sbjct: 190 EEAVLALADGLQIGGSLFRHEIGYVLGQMQHKAAVPGLSAALERFEENPMVRHECAEALG 249

Query: 265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
           SIA +  +  L+    D E +V +SCEVAL M +YE     F+Y
Sbjct: 250 SIAHEDCLKALRAHVGDGERVVRESCEVALDMHDYEN-SGDFQY 292

Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
225437840	315	PREDICTED: deoxyhypusine hydroxylase [Vi	0.971	0.980	0.841	1e-148
224066275	318	predicted protein [Populus trichocarpa]	0.993	0.993	0.789	1e-140
255560003	303	lyase, putative [Ricinus communis] gi|22	0.946	0.993	0.817	1e-138
224082770	319	predicted protein [Populus trichocarpa]	0.981	0.978	0.789	1e-137
18410896	314	deoxyhypusine hydroxylase [Arabidopsis t	0.946	0.958	0.788	1e-133
297817154	314	hypothetical protein ARALYDRAFT_907292 [	0.959	0.971	0.771	1e-132
449465246	320	PREDICTED: deoxyhypusine hydroxylase-lik	0.984	0.978	0.786	1e-131
388507224	317	unknown [Medicago truncatula]	0.990	0.993	0.743	1e-131
356504995	302	PREDICTED: deoxyhypusine hydroxylase-lik	0.946	0.996	0.768	1e-128
255648177	302	unknown [Glycine max]	0.946	0.996	0.764	1e-127

>gi|225437840|ref|XP_002263238.1| PREDICTED: deoxyhypusine hydroxylase [Vitis vinifera] gi|297744120|emb|CBI37090.3| unnamed protein product [Vitis vinifera]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 261/310 (84%), Positives = 284/310 (91%), Gaps = 1/310 (0%)

Query: 9   NAFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHE 68
           N+F  SPE EKFLCDRL+DPTQPISERFRALFSLRNL+GP PR ALI AT+DSSNLLAHE
Sbjct: 6   NSFSVSPETEKFLCDRLIDPTQPISERFRALFSLRNLRGPAPRQALILATRDSSNLLAHE 65

Query: 69  AAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQ 128
           AAFALGQMQD +A+PALEAVLNDFSLHPIVRHEAAEALGAIGLESN+PLLKNSLV DPAQ
Sbjct: 66  AAFALGQMQDVDAVPALEAVLNDFSLHPIVRHEAAEALGAIGLESNVPLLKNSLVVDPAQ 125

Query: 129 EVRETCELALERIEKLK-ASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEK 187
           EVRETCELAL RIE++K   G+DG SM E SPF+SVDPAAPASSCSSVD LREVLL EEK
Sbjct: 126 EVRETCELALRRIEEVKNVVGNDGMSMVEASPFLSVDPAAPASSCSSVDQLREVLLDEEK 185

Query: 188 GMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLR 247
           GMYERYAALFALRN GGDEAVSAI+DSL A SALL+HEVAYVLGQLQ+KAASAALS++LR
Sbjct: 186 GMYERYAALFALRNQGGDEAVSAIVDSLCANSALLRHEVAYVLGQLQDKAASAALSNILR 245

Query: 248 NVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFE 307
           NVNEHPMVRHEAAEALGSIAD+ S+ LL+EFAKDPEPIVSQSCEVAL+MLE+E+  KSFE
Sbjct: 246 NVNEHPMVRHEAAEALGSIADEHSVALLEEFAKDPEPIVSQSCEVALTMLEFERSGKSFE 305

Query: 308 YLFMQAPLMQ 317
           YLFMQ P +Q
Sbjct: 306 YLFMQTPQVQ 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066275|ref|XP_002302059.1| predicted protein [Populus trichocarpa] gi|222843785|gb|EEE81332.1| predicted protein [Populus trichocarpa]

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 251/318 (78%), Positives = 279/318 (87%), Gaps = 2/318 (0%)

Query: 1   MDSTDKFTNAFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKD 60
           M S D  T    S   ME+FLC+RLVD TQPI ERFRALFSLRNLKGPGPR+ALI AT+D
Sbjct: 1   MGSLDT-TTPTGSRSNMEQFLCERLVDQTQPIHERFRALFSLRNLKGPGPRNALIHATRD 59

Query: 61  SSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKN 120
           SSNLLAHEAAFALGQMQDAEAIPALEA LND SLHPIVRHEA+EALGAIGLESN+P LKN
Sbjct: 60  SSNLLAHEAAFALGQMQDAEAIPALEAALNDLSLHPIVRHEASEALGAIGLESNVPFLKN 119

Query: 121 SLVSDPAQEVRETCELALERIEKLKA-SGSDGSSMTERSPFMSVDPAAPASSCSSVDMLR 179
           SL +DPAQEVRETCELAL+RIE++ + S  DGSS+ E+SPFMSVDPAAPAS CSSVD LR
Sbjct: 120 SLTNDPAQEVRETCELALKRIEEMNSTSNVDGSSVAEKSPFMSVDPAAPASFCSSVDELR 179

Query: 180 EVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAAS 239
            VLL E++ MYERY ALFALRNHGGDEAVSAI+DSL A+SALLKHEVAYVLGQLQNK AS
Sbjct: 180 GVLLDEKRSMYERYGALFALRNHGGDEAVSAIVDSLAASSALLKHEVAYVLGQLQNKVAS 239

Query: 240 AALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEY 299
           AAL  +LR+ NEHPMVRHEAAEALGSIAD+QS+ LL+EF+KD EP+V+QSCEVALSMLE+
Sbjct: 240 AALCRILRDANEHPMVRHEAAEALGSIADEQSVALLEEFSKDHEPLVAQSCEVALSMLEF 299

Query: 300 EQLEKSFEYLFMQAPLMQ 317
           E+  KSFEYLFMQ PL+Q
Sbjct: 300 ERSGKSFEYLFMQDPLVQ 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560003|ref|XP_002521020.1| lyase, putative [Ricinus communis] gi|223539857|gb|EEF41437.1| lyase, putative [Ricinus communis]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/302 (81%), Positives = 272/302 (90%), Gaps = 1/302 (0%)

Query: 17  MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQM 76
           ME+FLC RL+D TQPISERFRALFSLRNLKG  PR+ALI AT+DSSNLLAHEAAFALGQM
Sbjct: 1   MEQFLCSRLLDTTQPISERFRALFSLRNLKGTAPRNALIHATRDSSNLLAHEAAFALGQM 60

Query: 77  QDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCEL 136
           QD+EAIPALEA+LND SLHPIVRHEAAEALGAIGL SN+PLLKNSL  DPAQEVRETCEL
Sbjct: 61  QDSEAIPALEAILNDLSLHPIVRHEAAEALGAIGLLSNVPLLKNSLAVDPAQEVRETCEL 120

Query: 137 ALERIEKL-KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAA 195
           AL+RIE++  A+  + +S +ERSPF+SVDPA PAS C SVD LRE LL E KGMYERYAA
Sbjct: 121 ALKRIEEMGTANNCESTSGSERSPFLSVDPAVPASCCCSVDKLREALLDEGKGMYERYAA 180

Query: 196 LFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMV 255
           LFALRN+GGD+AVSAI++SLGA SALLKHEVAYVLGQLQNKAASAALS +LR+VNEHPMV
Sbjct: 181 LFALRNNGGDDAVSAIVESLGAKSALLKHEVAYVLGQLQNKAASAALSRILRDVNEHPMV 240

Query: 256 RHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPL 315
           RHEAAEALGSIAD+QSI LL+EF+KD EPIVSQSCEVALSMLEYE+  KSFEYLFMQ PL
Sbjct: 241 RHEAAEALGSIADEQSISLLEEFSKDSEPIVSQSCEVALSMLEYERSGKSFEYLFMQDPL 300

Query: 316 MQ 317
            Q
Sbjct: 301 AQ 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082770|ref|XP_002306832.1| predicted protein [Populus trichocarpa] gi|222856281|gb|EEE93828.1| predicted protein [Populus trichocarpa]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 248/314 (78%), Positives = 275/314 (87%), Gaps = 2/314 (0%)

Query: 6   KFTNAFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLL 65
           K T    S   +E+FL DRL+D +QPI ERFRALFSLRNLKGPGPR+ALI AT+DSSNLL
Sbjct: 5   KATIPTDSRSNLEQFLFDRLLDQSQPIHERFRALFSLRNLKGPGPRNALIHATRDSSNLL 64

Query: 66  AHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSD 125
           AHEAAFALGQMQDAEAIPALEAVLND SLHPIVRHEAAEALGAIGLES +PLLKNSL  D
Sbjct: 65  AHEAAFALGQMQDAEAIPALEAVLNDLSLHPIVRHEAAEALGAIGLESIVPLLKNSLTGD 124

Query: 126 PAQEVRETCELALERIEKLKASGS--DGSSMTERSPFMSVDPAAPASSCSSVDMLREVLL 183
           PAQEVRETCELAL+RIE++ A+ S  DGSS+ E+SPF+SVDPAAPAS  SSVD LR  LL
Sbjct: 125 PAQEVRETCELALKRIEEMNATTSTVDGSSVAEKSPFLSVDPAAPASLSSSVDELRGFLL 184

Query: 184 GEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALS 243
            E++GMYERY ALFALRNHGGD AVSAI+DSL A SALLKHEVAYVLGQLQNKAASAAL 
Sbjct: 185 DEKRGMYERYGALFALRNHGGDGAVSAIVDSLAANSALLKHEVAYVLGQLQNKAASAALC 244

Query: 244 DVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLE 303
            +LRN NEHPMVRHEAAEALGSIAD++S+ LL+EF+KDPEP+V+QSCEVALSMLE+E+  
Sbjct: 245 RILRNANEHPMVRHEAAEALGSIADEKSVALLEEFSKDPEPLVAQSCEVALSMLEFERSG 304

Query: 304 KSFEYLFMQAPLMQ 317
           KSFEYLFMQ PL Q
Sbjct: 305 KSFEYLFMQDPLAQ 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410896|ref|NP_567062.1| deoxyhypusine hydroxylase [Arabidopsis thaliana] gi|75250258|sp|Q94JW0.1|DOHH_ARATH RecName: Full=Deoxyhypusine hydroxylase; Short=DOHH; AltName: Full=Deoxyhypusine dioxygenase; AltName: Full=Deoxyhypusine monooxygenase gi|13926240|gb|AAK49594.1|AF372878_1 AT3g58180/F9D24_90 [Arabidopsis thaliana] gi|22655416|gb|AAM98300.1| At3g58180/F9D24_90 [Arabidopsis thaliana] gi|222423905|dbj|BAH19916.1| AT3G58180 [Arabidopsis thaliana] gi|332646230|gb|AEE79751.1| deoxyhypusine hydroxylase [Arabidopsis thaliana]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/302 (78%), Positives = 266/302 (88%), Gaps = 1/302 (0%)

Query: 17  MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQM 76
           +EKFLC+RLVD +QPISERFRALFSLRNLKGPGPR+ALI A++DSSNLLAHEAAFALGQM
Sbjct: 13  LEKFLCERLVDQSQPISERFRALFSLRNLKGPGPRNALILASRDSSNLLAHEAAFALGQM 72

Query: 77  QDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCEL 136
           QDAEAIPALE+VLND SLHPIVRHEAAEALGAIGL  N+ +LK SL SDPAQEVRETCEL
Sbjct: 73  QDAEAIPALESVLNDMSLHPIVRHEAAEALGAIGLAGNVNILKKSLSSDPAQEVRETCEL 132

Query: 137 ALERIEKL-KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAA 195
           AL+RIE +      + SS TE+SPFMSVDPA PA+S SSV  LR+VLL E KGMYERYAA
Sbjct: 133 ALKRIEDMSNVDAENQSSTTEKSPFMSVDPAGPAASFSSVHQLRQVLLDETKGMYERYAA 192

Query: 196 LFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMV 255
           LFALRNHGG+EAVSAI+DSL A+SALL+HEVAYVLGQLQ+K A A LS VLR+VNEHPMV
Sbjct: 193 LFALRNHGGEEAVSAIVDSLSASSALLRHEVAYVLGQLQSKTALATLSKVLRDVNEHPMV 252

Query: 256 RHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPL 315
           RHEAAEALGSIAD+QSI LL+EF+KDPEPIV+QSCEVALSMLE+E   KSFE+ F Q PL
Sbjct: 253 RHEAAEALGSIADEQSIALLEEFSKDPEPIVAQSCEVALSMLEFENSGKSFEFFFTQDPL 312

Query: 316 MQ 317
           + 
Sbjct: 313 VH 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817154|ref|XP_002876460.1| hypothetical protein ARALYDRAFT_907292 [Arabidopsis lyrata subsp. lyrata] gi|297322298|gb|EFH52719.1| hypothetical protein ARALYDRAFT_907292 [Arabidopsis lyrata subsp. lyrata]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/306 (77%), Positives = 265/306 (86%), Gaps = 1/306 (0%)

Query: 13  SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFA 72
           S+  +EKFLC+RLVD +QPISERFRALFSLRNLKGPGPR+ALI A++DSSNLLAHEAAFA
Sbjct: 9   STVNLEKFLCERLVDQSQPISERFRALFSLRNLKGPGPRNALILASRDSSNLLAHEAAFA 68

Query: 73  LGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRE 132
           LGQMQDAEAIPALE+VLND SLHPIVRHE  EALGAIGL  N+ +LK SL SDPAQEVRE
Sbjct: 69  LGQMQDAEAIPALESVLNDMSLHPIVRHELTEALGAIGLAGNVDILKKSLSSDPAQEVRE 128

Query: 133 TCELALERIEKL-KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYE 191
           TCELAL+RIE+L      + SS  E+SPFMSVDPA PA+S SSV  LR++LL E KGMYE
Sbjct: 129 TCELALKRIEELSNVDAENQSSTAEKSPFMSVDPAGPAASFSSVHQLRQILLDETKGMYE 188

Query: 192 RYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNE 251
           RYAALFALRNHGG+EAVSAI+DSL A SALL+HEVAYVLGQLQNK A A LS VLR+VNE
Sbjct: 189 RYAALFALRNHGGEEAVSAIVDSLSANSALLRHEVAYVLGQLQNKTALATLSKVLRDVNE 248

Query: 252 HPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFM 311
           HPMVRHEAAEALGSIAD+QSI LL+EF++DPEPIV+QSCEVALSMLE+E   KSFE+ F 
Sbjct: 249 HPMVRHEAAEALGSIADEQSIALLEEFSRDPEPIVAQSCEVALSMLEFENSGKSFEFFFT 308

Query: 312 QAPLMQ 317
           Q PL+ 
Sbjct: 309 QDPLVH 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465246|ref|XP_004150339.1| PREDICTED: deoxyhypusine hydroxylase-like [Cucumis sativus] gi|449526150|ref|XP_004170077.1| PREDICTED: deoxyhypusine hydroxylase-like [Cucumis sativus]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/314 (78%), Positives = 277/314 (88%), Gaps = 1/314 (0%)

Query: 5   DKFTNAFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNL 64
           D   ++F  S +MEKFLCDRL DP+ PI+ERFRALFSLRNLKGP PR+ALI AT+DSSNL
Sbjct: 7   DGDVSSFSCSSDMEKFLCDRLNDPSFPIAERFRALFSLRNLKGPAPRNALILATRDSSNL 66

Query: 65  LAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVS 124
           LAHEAAFALGQMQDA+AIPAL AVLND SLHPIVRHEAAEALGAIGLESNIP L+ SL  
Sbjct: 67  LAHEAAFALGQMQDADAIPALVAVLNDLSLHPIVRHEAAEALGAIGLESNIPFLEKSLAL 126

Query: 125 DPAQEVRETCELALERIEKLKASGS-DGSSMTERSPFMSVDPAAPASSCSSVDMLREVLL 183
           DPAQEV+ETCELAL RIE+LK SG+ D SS  E+SPF+SVDPAAPASS +SV  LRE+LL
Sbjct: 127 DPAQEVKETCELALRRIEQLKDSGNEDESSKVEKSPFLSVDPAAPASSSASVGQLREILL 186

Query: 184 GEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALS 243
            E+K MYERYAALF LRN+G DEA++AIIDSL +TSALLKHEVAYVLGQLQ KAAS ALS
Sbjct: 187 DEDKDMYERYAALFTLRNNGNDEALTAIIDSLSSTSALLKHEVAYVLGQLQKKAASDALS 246

Query: 244 DVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLE 303
           D+L +V EHPMVRHEAAEALGSIAD++SI LLKEF+KDPEPIVSQSCEVALSMLEYE+L 
Sbjct: 247 DILEDVKEHPMVRHEAAEALGSIADEKSIALLKEFSKDPEPIVSQSCEVALSMLEYERLG 306

Query: 304 KSFEYLFMQAPLMQ 317
           KSFE+LFMQ+P +Q
Sbjct: 307 KSFEFLFMQSPQVQ 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507224|gb|AFK41678.1| unknown [Medicago truncatula]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/316 (74%), Positives = 273/316 (86%), Gaps = 1/316 (0%)

Query: 3   STDKFTNAFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSS 62
           S +   +    S EMEKFLC+ L+D TQPISERFRALFS RNLKGP PR ALI AT+DSS
Sbjct: 2   SANSLNDVASCSSEMEKFLCELLLDSTQPISERFRALFSFRNLKGPAPRTALILATRDSS 61

Query: 63  NLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSL 122
           NLLAHEAAFALGQMQ+ EAIPAL +VLND SLHPIVRHEAAEALGAIG +SN+ LLK+SL
Sbjct: 62  NLLAHEAAFALGQMQELEAIPALTSVLNDLSLHPIVRHEAAEALGAIGSDSNVSLLKHSL 121

Query: 123 VSDPAQEVRETCELALERIEKLK-ASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREV 181
            SDPAQEVRE C+LAL+RI  LK A+ +D S+    SPF SVDPAAPASSCSSV  LR++
Sbjct: 122 DSDPAQEVREACQLALQRILNLKHAAATDDSTAPGISPFKSVDPAAPASSCSSVSQLRDL 181

Query: 182 LLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAA 241
           LL EEKGMYERYAALF+LRN GG+EAV+AI+DSLG+ SALLKHEVAYVLGQLQ+KAASAA
Sbjct: 182 LLDEEKGMYERYAALFSLRNDGGNEAVAAIVDSLGSKSALLKHEVAYVLGQLQDKAASAA 241

Query: 242 LSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQ 301
           LS++LR+VNEHPMVRHEAAEALGSIADDQS+ LL+EF+ DPEP+V+QSC+VALSMLE+E+
Sbjct: 242 LSNILRDVNEHPMVRHEAAEALGSIADDQSVSLLEEFSADPEPLVAQSCQVALSMLEFER 301

Query: 302 LEKSFEYLFMQAPLMQ 317
             KSFE+LFM+ P++ 
Sbjct: 302 SGKSFEFLFMRTPIVH 317

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504995|ref|XP_003521278.1| PREDICTED: deoxyhypusine hydroxylase-like [Glycine max]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/302 (76%), Positives = 266/302 (88%), Gaps = 1/302 (0%)

Query: 17  MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQM 76
           MEKFLC+ L+D +QPISERFRALFSLRNLKGP PR+ALI AT+DSSNLLAHEAAFALGQM
Sbjct: 1   MEKFLCELLLDSSQPISERFRALFSLRNLKGPVPRNALICATRDSSNLLAHEAAFALGQM 60

Query: 77  QDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCEL 136
           QD EAIPAL +VLND SLHPIVRHEAAEALGAIG + N+P LK+SL  DPA+EVRETCEL
Sbjct: 61  QDLEAIPALASVLNDLSLHPIVRHEAAEALGAIGSDGNVPFLKSSLDLDPAEEVRETCEL 120

Query: 137 ALERIEKLKASG-SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAA 195
           AL+RI+ LK +G +D  S    SPF SVDPAAPA S SSVD LR+VLL EEKGMYERYAA
Sbjct: 121 ALQRIQNLKDAGNTDELSANGVSPFKSVDPAAPAISGSSVDQLRQVLLDEEKGMYERYAA 180

Query: 196 LFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMV 255
           LFALRN GG+EAV+AIIDSLG+ SALL+HEVAYVLGQLQ+KAASAALS++L++VNEHPMV
Sbjct: 181 LFALRNDGGNEAVTAIIDSLGSKSALLRHEVAYVLGQLQDKAASAALSNILKDVNEHPMV 240

Query: 256 RHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPL 315
           RHEAAEALGSIADDQ + LL+EF+ DPEP+VSQSC+VALSMLE+E+  KSFE+LFM+ P 
Sbjct: 241 RHEAAEALGSIADDQCVALLEEFSADPEPLVSQSCQVALSMLEFERSGKSFEFLFMRTPT 300

Query: 316 MQ 317
           + 
Sbjct: 301 VH 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648177|gb|ACU24542.1| unknown [Glycine max]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/302 (76%), Positives = 265/302 (87%), Gaps = 1/302 (0%)

Query: 17  MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQM 76
           MEKFLC+ L+D +QPISERFRALFSLRNLKGP PR+ALI AT+DSSNLLAHEAAFALGQM
Sbjct: 1   MEKFLCELLLDSSQPISERFRALFSLRNLKGPVPRNALICATRDSSNLLAHEAAFALGQM 60

Query: 77  QDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCEL 136
           QD EAIPAL +VLND SLHPIVRHEAAEALGAIG + N+P LK+SL  DPA+EVRETCEL
Sbjct: 61  QDLEAIPALASVLNDLSLHPIVRHEAAEALGAIGSDGNVPFLKSSLDLDPAEEVRETCEL 120

Query: 137 ALERIEKLKASG-SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAA 195
           AL+RI+ LK +G +D  S    SPF SVDPAAPA S SSV  LR+VLL EEKGMYERYAA
Sbjct: 121 ALQRIQNLKDAGNTDELSANGVSPFKSVDPAAPAISGSSVGQLRQVLLDEEKGMYERYAA 180

Query: 196 LFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMV 255
           LFALRN GG+EAV+AIIDSLG+ SALL+HEVAYVLGQLQ+KAASAALS++L++VNEHPMV
Sbjct: 181 LFALRNDGGNEAVTAIIDSLGSKSALLRHEVAYVLGQLQDKAASAALSNILKDVNEHPMV 240

Query: 256 RHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPL 315
           RHEAAEALGSIADDQ + LL+EF+ DPEP+VSQSC+VALSMLE+E+  KSFE+LFM+ P 
Sbjct: 241 RHEAAEALGSIADDQCVALLEEFSADPEPLVSQSCQVALSMLEFERSGKSFEFLFMRTPT 300

Query: 316 MQ 317
           + 
Sbjct: 301 VH 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
TAIR|locus:2085380	314	AT3G58180 "AT3G58180" [Arabido	0.955	0.968	0.747	2.8e-114
UNIPROTKB|Q2QXB3	319	LOC_Os12g06620 "Deoxyhypusine	0.990	0.987	0.701	3.9e-108
UNIPROTKB|Q2QLW3	302	LOC_Os12g43100 "Deoxyhypusine	0.937	0.986	0.698	3.7e-103
UNIPROTKB|Q5ZIP3	299	DOHH "Deoxyhypusine hydroxylas	0.871	0.926	0.489	4.3e-61
MGI|MGI:1915964	302	Dohh "deoxyhypusine hydroxylas	0.874	0.920	0.489	1.2e-60
UNIPROTKB|Q9BU89	302	DOHH "Deoxyhypusine hydroxylas	0.871	0.917	0.485	2.4e-60
RGD|1304783	302	Dohh "deoxyhypusine hydroxylas	0.874	0.920	0.482	8.1e-60
ZFIN|ZDB-GENE-030131-451	305	dohh "deoxyhypusine hydroxylas	0.883	0.921	0.468	2.5e-58
UNIPROTKB|F1S8E6	303	DOHH "Uncharacterized protein"	0.874	0.917	0.475	2.5e-58
UNIPROTKB|Q0VC53	303	DOHH "Deoxyhypusine hydroxylas	0.874	0.917	0.471	5.1e-58

TAIR|locus:2085380 AT3G58180 "AT3G58180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1127 (401.8 bits), Expect = 2.8e-114, P = 2.8e-114
 Identities = 228/305 (74%), Positives = 256/305 (83%)

Query:    13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFA 72
             S   +EKFLC+RLVD +QPISERFRALFSLRNLKGPGPR+ALI A++DSSNLLAHEAAFA
Sbjct:     9 SMVNLEKFLCERLVDQSQPISERFRALFSLRNLKGPGPRNALILASRDSSNLLAHEAAFA 68

Query:    73 LGQMQDAEAIPALEAVLNDFSLHPIVRHXXXXXXXXXXXXSNIPLLKNSLVSDPAQEVRE 132
             LGQMQDAEAIPALE+VLND SLHPIVRH             N+ +LK SL SDPAQEVRE
Sbjct:    69 LGQMQDAEAIPALESVLNDMSLHPIVRHEAAEALGAIGLAGNVNILKKSLSSDPAQEVRE 128

Query:   133 TCELALERIEKLK-ASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYE 191
             TCELAL+RIE +      + SS TE+SPFMSVDPA PA+S SSV  LR+VLL E KGMYE
Sbjct:   129 TCELALKRIEDMSNVDAENQSSTTEKSPFMSVDPAGPAASFSSVHQLRQVLLDETKGMYE 188

Query:   192 RYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNE 251
             RYAALFALRNHGG+EAVSAI+DSL A+SALL+HEVAYVLGQLQ+K A A LS VLR+VNE
Sbjct:   189 RYAALFALRNHGGEEAVSAIVDSLSASSALLRHEVAYVLGQLQSKTALATLSKVLRDVNE 248

Query:   252 HPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFM 311
             HPMVRHEAAEALGSIAD+QSI LL+EF+KDPEPIV+QSCEVALSMLE+E   KSFE+ F 
Sbjct:   249 HPMVRHEAAEALGSIADEQSIALLEEFSKDPEPIVAQSCEVALSMLEFENSGKSFEFFFT 308

Query:   312 QAPLM 316
             Q PL+
Sbjct:   309 QDPLV 313

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030089 "phycobilisome" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q2QXB3 LOC_Os12g06620 "Deoxyhypusine hydroxylase-A" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
 Identities = 223/318 (70%), Positives = 253/318 (79%)

Query:     1 MDSTD-KFTNAFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATK 59
             M+S +   ++ F  +PEMEKFLCD L+D  QPI+ERFRALFSLRNL G GPR AL++A +
Sbjct:     1 MESAEVAASSTFGPTPEMEKFLCDLLLDTAQPIAERFRALFSLRNLHGDGPRCALLQAAR 60

Query:    60 DSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHXXXXXXXXXXXXSNIPLLK 119
             DSSNLLAHEAAFALGQMQDAEAIPALEAVL D SLHPIVRH             +IPLL+
Sbjct:    61 DSSNLLAHEAAFALGQMQDAEAIPALEAVLKDLSLHPIVRHEAAEALGAIGLEKSIPLLE 120

Query:   120 NSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLR 179
              SL +DPA EV+ETCELAL RIE+ K +G   S  T  SPF+SVDPA PA    SV  LR
Sbjct:   121 ESLAADPAVEVQETCELALRRIEQQKNAGV--SESTTISPFLSVDPALPAKQGLSVHQLR 178

Query:   180 EVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAAS 239
             E+LL E++ MYERYAALFALRN   D AVSAI+ +LGA SALLKHEVAYVLGQLQNKAAS
Sbjct:   179 EILLNEQESMYERYAALFALRNDSRDAAVSAIVAALGAKSALLKHEVAYVLGQLQNKAAS 238

Query:   240 AALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEY 299
              ALS VL+NV+EHPMVRHEAAEALGSIAD +SI LL+EFAKDPEPIVSQSCEVALSMLEY
Sbjct:   239 DALSTVLKNVDEHPMVRHEAAEALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEY 298

Query:   300 EQLEKSFEYLFMQAPLMQ 317
             E+  KSFE+LF+Q P +Q
Sbjct:   299 ERSGKSFEFLFLQTPGVQ 316

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=ISS

GO:0019135 "deoxyhypusine monooxygenase activity" evidence=ISS

UNIPROTKB|Q2QLW3 LOC_Os12g43100 "Deoxyhypusine hydroxylase-B" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 211/302 (69%), Positives = 242/302 (80%)

Query:    17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQM 76
             ME FLCDRL+D  QPI+ERFRALFSLRNL+G  PR AL++A +DSSNLLAHEAAFALGQM
Sbjct:     1 MEGFLCDRLLDAAQPIAERFRALFSLRNLRGDAPRRALLQAARDSSNLLAHEAAFALGQM 60

Query:    77 QDAEAIPALEAVLNDFSLHPIVRHXXXXXXXXXXXXSNIPLLKNSLVSDPAQEVRETCEL 136
             QDAEAIPALEAVL D SLHPIVRH             +I LL+ SL  DPA EV+ETCEL
Sbjct:    61 QDAEAIPALEAVLKDLSLHPIVRHEAAEALGAIGLEKSISLLEESLAVDPAVEVQETCEL 120

Query:   137 ALERIEKLK-ASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAA 195
             A+ RIE+ K  SG + +++   SPF+SVDPA PA     V+ LRE+LL E++ MYERYAA
Sbjct:   121 AIRRIEEQKNTSGVESATV---SPFLSVDPALPAKQGLPVEQLRELLLNEQESMYERYAA 177

Query:   196 LFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMV 255
             LFALRN  GD AVSAI+ +LG  SALL+HEVAYVLGQLQNKAAS ALS VL+NV+EHPMV
Sbjct:   178 LFALRNDSGDAAVSAIVAALGVKSALLRHEVAYVLGQLQNKAASDALSTVLKNVDEHPMV 237

Query:   256 RHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPL 315
             RHEAAEALGSIAD +SI LL+EFAKDPEPIVSQSCEVALSMLEYE+  K+FE+LF Q P 
Sbjct:   238 RHEAAEALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEYERSGKAFEFLFPQTPQ 297

Query:   316 MQ 317
             +Q
Sbjct:   298 VQ 299

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=ISS

GO:0019135 "deoxyhypusine monooxygenase activity" evidence=ISS

UNIPROTKB|Q5ZIP3 DOHH "Deoxyhypusine hydroxylase" [Gallus gallus (taxid:9031)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 139/284 (48%), Positives = 177/284 (62%)

Query:    25 LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
             L+D  QP+  RFRALF+LRNL GP   D ++R   DSS LL HE AF LGQM+D  AIPA
Sbjct:    14 LLDAAQPLPARFRALFTLRNLGGPAAIDCIVRGFADSSALLKHELAFCLGQMRDRAAIPA 73

Query:    85 LEAVLNDFSLHPIVRHXXXXXXXXXXXXSNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
             L  VL D    P+VRH              + +L+     DP  EV ETC+LA+ R+E L
Sbjct:    74 LLGVLQDSQQEPMVRHEAGEALGAIGDPEVLDVLRR-YSEDPVVEVAETCQLAVRRLEWL 132

Query:   145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
             +  G +  S    SP+ SVDPA PA   + V  LR VLL E + +++RY A+FALRN GG
Sbjct:   133 QEHGEEPGS----SPYRSVDPAPPAEE-TDVATLRAVLLDESRPLFDRYRAMFALRNLGG 187

Query:   205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
              +AV A+ D L A SAL +HE+ YVLGQ+Q++A    L+  LR+  E+PMVRHE AEALG
Sbjct:   188 RDAVLALADGLRAGSALFRHEIGYVLGQMQDEACVPQLTAALRSRAENPMVRHECAEALG 247

Query:   265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
             SIA    +  L+ FA+D E +V +SCEVAL M EYE     F+Y
Sbjct:   248 SIARPSCLETLRAFAQDEERVVRESCEVALDMYEYEN-GPQFQY 290

GO:0046872 "metal ion binding" evidence=IEA

GO:0019135 "deoxyhypusine monooxygenase activity" evidence=ISS

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=ISS

MGI|MGI:1915964 Dohh "deoxyhypusine hydroxylase/monooxygenase" [Mus musculus (taxid:10090)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 139/284 (48%), Positives = 174/284 (61%)

Query:    25 LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
             LVDP QP+  RFRALF+LR L GP     + R  +DSS LL HE A+ LGQM+DA AIP 
Sbjct:    14 LVDPKQPLQARFRALFTLRGLGGPDAISWISRGFEDSSALLKHELAYCLGQMRDARAIPV 73

Query:    85 LEAVLNDFSLHPIVRHXXXXXXXXXXXXSNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
             L  VL D S  P+VRH              + LLK    +DP  EV ETC+LA+ R+E L
Sbjct:    74 LADVLQDTSQEPMVRHEAGEALGAIGNPEVLGLLKQ-YSTDPVVEVAETCQLAVGRLEWL 132

Query:   145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
             +    +    T   P++SVDPA PA+    V  LRE LL E + ++ERY A+FALRN GG
Sbjct:   133 QQHPGEA---TCAGPYLSVDPAPPAAE-QDVGRLREALLDEARPLFERYRAMFALRNVGG 188

Query:   205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
              EA  A+ + L   SAL +HEV YVLGQLQ++AA   L+  L    E PMVRHE AEALG
Sbjct:   189 KEAALALAEGLQCGSALFRHEVGYVLGQLQHEAAVPGLAATLARTTESPMVRHECAEALG 248

Query:   265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
             +IA    +  L+E  +DPE +V +SCEVAL M EYE   + F+Y
Sbjct:   249 AIARPACLAALREHIEDPEQVVRESCEVALDMYEYES-SQDFQY 291

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0019135 "deoxyhypusine monooxygenase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|Q9BU89 DOHH "Deoxyhypusine hydroxylase" [Homo sapiens (taxid:9606)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 138/284 (48%), Positives = 176/284 (61%)

Query:    25 LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
             LVDP QP+  RFRALF+LR L GPG    + +A  D S LL HE A+ LGQMQDA AIP 
Sbjct:    14 LVDPKQPLQARFRALFTLRGLGGPGAIAWISQAFDDDSALLKHELAYCLGQMQDARAIPM 73

Query:    85 LEAVLNDFSLHPIVRHXXXXXXXXXXXXSNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
             L  VL D    P+VRH              + +LK    SDP  EV ETC+LA+ R+E L
Sbjct:    74 LVDVLQDTRQEPMVRHEAGEALGAIGDPEVLEILKQ-YSSDPVIEVAETCQLAVRRLEWL 132

Query:   145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
             +  G + ++     P++SVDPA PA     V  LRE LL E + ++ERY A+FALRN GG
Sbjct:   133 QQHGGEPAA----GPYLSVDPAPPAEE-RDVGRLREALLDESRPLFERYRAMFALRNAGG 187

Query:   205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
             +EA  A+ + L   SAL +HEV YVLGQLQ++AA   L+  L    E+PMVRHE AEALG
Sbjct:   188 EEAALALAEGLHCGSALFRHEVGYVLGQLQHEAAVPQLAAALARCTENPMVRHECAEALG 247

Query:   265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
             +IA    +  L+  A DPE +V +SCEVAL M E+E   ++F+Y
Sbjct:   248 AIARPACLAALQAHADDPERVVRESCEVALDMYEHET-GRAFQY 290

GO:0046872 "metal ion binding" evidence=IEA

GO:0019135 "deoxyhypusine monooxygenase activity" evidence=IMP;TAS

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IMP;TAS

GO:0005575 "cellular_component" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

RGD|1304783 Dohh "deoxyhypusine hydroxylase/monooxygenase" [Rattus norvegicus (taxid:10116)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 137/284 (48%), Positives = 175/284 (61%)

Query:    25 LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
             LVD TQP+  RFRALF+LR L GP     + R  +DSS LL HE A+ LGQM+D  AIP 
Sbjct:    14 LVDSTQPLQARFRALFTLRGLGGPDAISWISRGFEDSSALLKHELAYCLGQMRDPRAIPV 73

Query:    85 LEAVLNDFSLHPIVRHXXXXXXXXXXXXSNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
             L +VL D +  P+VRH              + LLK    +DP  EV ETC+LA+ R+E L
Sbjct:    74 LVSVLQDRNQEPMVRHEAGEALGAIGNPKVLGLLKQ-YSTDPVVEVAETCQLAVRRLEWL 132

Query:   145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
             +    +    T   P++SVDPA PA+    V  LRE LL E + ++ERY A+FALRN GG
Sbjct:   133 QQHPGEA---TCAGPYLSVDPAPPAAE-GDVGRLRETLLDEAQPLFERYRAMFALRNVGG 188

Query:   205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
              EA  A+ + L   SAL +HEV YVLGQLQ++AA + L+  L    E PMVRHE AEALG
Sbjct:   189 KEAALALAEGLKCGSALFRHEVGYVLGQLQHEAAVSELAATLARTTESPMVRHECAEALG 248

Query:   265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
             +IA    +  L+E+  DPE +V +SCEVAL M EYE   + F+Y
Sbjct:   249 AIARPACLAALREYITDPERVVRESCEVALDMYEYEN-GQDFQY 291

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=ISO;ISS

GO:0019135 "deoxyhypusine monooxygenase activity" evidence=ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-451 dohh "deoxyhypusine hydroxylase/monooxygenase" [Danio rerio (taxid:7955)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 133/284 (46%), Positives = 173/284 (60%)

Query:    25 LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
             LV+  Q ++ RFRALF+LRNL G      +  A  D S LL HE A+ LGQMQD  AIP 
Sbjct:    14 LVNTKQDLTTRFRALFTLRNLGGAEAVKWISEAFVDESALLKHELAYCLGQMQDESAIPT 73

Query:    85 LEAVLNDFSLHPIVRHXXXXXXXXXXXXSNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
             LEAVL D +  P+VRH              + LLK     DP  EV ETC+LA++R+E L
Sbjct:    74 LEAVLKDTNQEPMVRHEAGEALGAIGNPKVLELLKK-YAEDPVIEVAETCQLAVKRLEWL 132

Query:   145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
                G      T+ +P+ SVDPA PA    SV  LR  LL E   +++RY A+FALRN G 
Sbjct:   133 MNGGEQTKDGTDENPYCSVDPAPPAQR-KSVPELRTQLLDETLPLFDRYRAMFALRNLGT 191

Query:   205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
             +EAV A+ D L  +SAL +HE+ YVLGQ+Q++A+   L   L  ++E+ MVRHE AEALG
Sbjct:   192 EEAVLALGDGLQCSSALFRHEIGYVLGQIQHEASIPQLQAALEKMDENAMVRHECAEALG 251

Query:   265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
             SI  +  + +L+ + KD E +V +SCEVAL MLEYE     F+Y
Sbjct:   252 SIGKEPCVQILERYRKDQERVVKESCEVALDMLEYEN-SSQFQY 294

GO:0005575 "cellular_component" evidence=ND

GO:0019135 "deoxyhypusine monooxygenase activity" evidence=IEA;ISS

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1S8E6 DOHH "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 135/284 (47%), Positives = 174/284 (61%)

Query:    25 LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
             LVDP QP+  RFRALF+LR L GPG    + RA  D S LL HE A+ LGQMQD+ AIP 
Sbjct:    14 LVDPGQPLQARFRALFTLRGLGGPGAITWISRAFGDDSALLKHELAYCLGQMQDSRAIPV 73

Query:    85 LEAVLNDFSLHPIVRHXXXXXXXXXXXXSNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
             L  VL D    P+VRH              + +LK    +DP  EV ETC+LA+ R+E L
Sbjct:    74 LVDVLRDTCQEPMVRHEAGEALGAIGNPEVLEILKQ-YSTDPVVEVAETCQLAVRRLEWL 132

Query:   145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
             +     G  + +  P++SVDPA PA     V  LRE+LL E + +++RY A+FALR+ GG
Sbjct:   133 QQHS--GEPVAQ-GPYLSVDPAPPAQE-RDVGQLREMLLDEAQPLFDRYRAMFALRDIGG 188

Query:   205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
             +EA  A+ + L   SAL +HE+ YVLGQLQ++AA   L   L    E PMVRHE AEALG
Sbjct:   189 EEAALALAEGLLCGSALFRHEIGYVLGQLQHEAAVPHLMAALARPAESPMVRHECAEALG 248

Query:   265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
             +IA    +  L+ +A DPE +V +SCEVAL M EYE    +F+Y
Sbjct:   249 AIARPACLAALRAYAADPERVVRESCEVALDMYEYET-GPAFQY 291

GO:0019135 "deoxyhypusine monooxygenase activity" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

UNIPROTKB|Q0VC53 DOHH "Deoxyhypusine hydroxylase" [Bos taurus (taxid:9913)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 134/284 (47%), Positives = 171/284 (60%)

Query:    25 LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPA 84
             LVDP QP+  RFRALF+LR L GP     + RA  D S LL HE A+ LGQMQD  AIP 
Sbjct:    14 LVDPGQPLQARFRALFTLRGLGGPVAISWISRAFDDDSALLKHELAYCLGQMQDRRAIPV 73

Query:    85 LEAVLNDFSLHPIVRHXXXXXXXXXXXXSNIPLLKNSLVSDPAQEVRETCELALERIEKL 144
             L  VL D    P+VRH              + +LK    +DP  EV ETC+LA+ R+E L
Sbjct:    74 LLDVLRDTRQEPMVRHEAGEALGAIGDPEVLEILKQ-YSTDPVVEVAETCQLAVRRLEWL 132

Query:   145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204
             +  G  G S   R P++SVDPA PA     +  LRE LL E + +++RY A+FALR+ GG
Sbjct:   133 QQHG--GESAV-RGPYLSVDPAPPAEE-RDLGQLREALLDEARPLFDRYRAMFALRDAGG 188

Query:   205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALG 264
              EA  A+ + L   SAL +HE+ YVLGQ+Q++AA   L+  L    E+PMVRHE AEALG
Sbjct:   189 KEAALALAEGLRCGSALFRHEIGYVLGQMQHEAAVPQLAAALAQPTENPMVRHECAEALG 248

Query:   265 SIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308
             +IA    +  L+    DPE +V +SCEVAL M EYE    +F+Y
Sbjct:   249 AIARPACLAALRAHVADPERVVRESCEVALDMYEYET-GSTFQY 291

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0019135 "deoxyhypusine monooxygenase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2UMQ8	DOHH_ASPOR	1, ., 1, 4, ., 9, 9, ., 2, 9	0.4026	0.8647	0.8112	yes	no
Q4HZ35	DOHH_GIBZE	1, ., 1, 4, ., 9, 9, ., 2, 9	0.3817	0.9025	0.8516	yes	no
Q9V9U4	DOHH_DROME	1, ., 1, 4, ., 9, 9, ., 2, 9	0.4401	0.8742	0.9205	yes	no
Q8SV71	DOHH_ENCCU	1, ., 1, 4, ., 9, 9, ., 2, 9	0.3917	0.8081	0.9017	yes	no
Q94JW0	DOHH_ARATH	1, ., 1, 4, ., 9, 9, ., 2, 9	0.7880	0.9465	0.9585	yes	no
Q556G4	DOHH_DICDI	1, ., 1, 4, ., 9, 9, ., 2, 9	0.4747	0.9150	0.9238	yes	no
Q6CHJ7	DOHH_YARLI	1, ., 1, 4, ., 9, 9, ., 2, 9	0.4219	0.9056	0.9350	yes	no
Q5ZIP3	DOHH_CHICK	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5211	0.8710	0.9264	yes	no
Q5AW32	DOHH_EMENI	1, ., 1, 4, ., 9, 9, ., 2, 9	0.3765	0.9150	0.8660	yes	no
P47120	DOHH_YEAST	1, ., 1, 4, ., 9, 9, ., 2, 9	0.4007	0.8459	0.8276	yes	no
Q17949	DOHH_CAEEL	1, ., 1, 4, ., 9, 9, ., 2, 9	0.4451	0.9025	0.9630	yes	no
Q7ZUX6	DOHH_DANRE	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5	0.8836	0.9213	yes	no
Q5PPJ4	DOHH_RAT	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5105	0.8742	0.9205	yes	no
Q2QXB3	DOHH1_ORYSJ	1, ., 1, 4, ., 9, 9, ., 2, 9	0.7516	0.9685	0.9655	yes	no
Q6BKA6	DOHH_DEBHA	1, ., 1, 4, ., 9, 9, ., 2, 9	0.4178	0.8427	0.8617	yes	no
Q6FUV3	DOHH_CANGA	1, ., 1, 4, ., 9, 9, ., 2, 9	0.4199	0.8459	0.8354	yes	no
A2QXL3	DOHH_ASPNC	1, ., 1, 4, ., 9, 9, ., 2, 9	0.3926	0.8647	0.8136	yes	no
Q752Z8	DOHH_ASHGO	1, ., 1, 4, ., 9, 9, ., 2, 9	0.4178	0.8427	0.8322	yes	no
Q9BU89	DOHH_HUMAN	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5176	0.8710	0.9172	yes	no
Q99LN9	DOHH_MOUSE	1, ., 1, 4, ., 9, 9, ., 2, 9	0.5176	0.8742	0.9205	yes	no
Q2QLW3	DOHH2_ORYSJ	1, ., 1, 4, ., 9, 9, ., 2, 9	0.7384	0.9371	0.9867	no	no
Q9P6K9	DOHH_SCHPO	1, ., 1, 4, ., 9, 9, ., 2, 9	0.4111	0.9213	0.9213	yes	no
Q4WHG5	DOHH_ASPFU	1, ., 1, 4, ., 9, 9, ., 2, 9	0.3846	0.8616	0.8179	yes	no
Q0VC53	DOHH_BOVIN	1, ., 1, 4, ., 9, 9, ., 2, 9	0.4964	0.8742	0.9174	yes	no
Q297S2	DOHH_DROPS	1, ., 1, 4, ., 9, 9, ., 2, 9	0.4401	0.8742	0.9205	yes	no
Q6CV81	DOHH_KLULA	1, ., 1, 4, ., 9, 9, ., 2, 9	0.4335	0.8364	0.8260	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.14.99.29	0.979
3rd Layer	1.14.99	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	318
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	1e-16
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	2e-13
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	4e-09
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	2e-08
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	2e-08
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	1e-07
smart00567	30	smart00567, EZ_HEAT, E-Z type HEAT repeats	7e-06
smart00567	30	smart00567, EZ_HEAT, E-Z type HEAT repeats	9e-05
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	2e-04
pfam03130	27	pfam03130, HEAT_PBS, PBS lyase HEAT-like repeat	0.001
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.002

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 78.8 bits (194), Expect = 1e-16
 Identities = 71/268 (26%), Positives = 112/268 (41%), Gaps = 27/268 (10%)

Query: 32  ISERFRALFSLRNLKGPGPRDA---LIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAV 88
            +   +AL  L +L      +A   L++  +D   L+   AA ALG++   EA+P L  +
Sbjct: 23  AAAALQALAELDDLILELAPEAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPLLREL 82

Query: 89  LNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG 148
           L+D    P VR  AA+ALG +G    +P L   L +D  + VR     AL ++       
Sbjct: 83  LSDED--PRVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALGKL------- 133

Query: 149 SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAV 208
                        ++DP   A            L      +  R AA  AL   G  EA+
Sbjct: 134 ---------GDERALDPLLEALQDEDSGSAAAALDAALLDV--RAAAAEALGELGDPEAI 182

Query: 209 SAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHP--MVRHEAAEALGSI 266
             +I+ L    A ++   A  LGQL   + +   +D+L          VR  A  ALG I
Sbjct: 183 PLLIELLEDEDADVRRAAASALGQL--GSENVEAADLLVKALSDESLEVRKAALLALGEI 240

Query: 267 ADDQSIGLLKEFAKDPEPIVSQSCEVAL 294
            D++++  L +  +D + I++     AL
Sbjct: 241 GDEEAVDALAKALEDEDVILALLAAAAL 268

Length = 335

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 52  DALIRA-TKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG 110
           +AL+ A   D    +   AA ALG++ D EA+PAL  +L D    P VR  AAEALG +G
Sbjct: 2   EALLEALLSDPDPEVRAAAARALGELGDPEALPALLELLKD--PDPEVRRAAAEALGKLG 59

Query: 111 LESNIPLLKNSLVSDPAQEVRETCELAL 138
               +P L   L  D    VR     AL
Sbjct: 60  DPEALPALLELLQDDDDAVVRAAAASAL 87

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 35  RFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSL 94
           R  A  +L  L  P    AL+   KD    +   AA ALG++ D EA+PAL  +L D   
Sbjct: 17  RAAAARALGELGDPEALPALLELLKDPDPEVRRAAAEALGKLGDPEALPALLELLQDDD- 75

Query: 95  HPIVRHEAAEALG 107
             +VR  AA AL 
Sbjct: 76  DAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 77/306 (25%), Positives = 115/306 (37%), Gaps = 19/306 (6%)

Query: 8   TNAFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAH 67
               + +PE    L   L D    +  R  A  +L  L        L     D    +  
Sbjct: 35  DLILELAPEAADELLKLLEDEDLLV--RLSAAVALGELGSEEAVPLLRELLSDEDPRVRD 92

Query: 68  EAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSL--VSD 125
            AA ALG++ D EA+P L  +L +   +  VR  AA ALG +G E  +  L  +L     
Sbjct: 93  AAADALGELGDPEAVPPLVELLEN-DENEGVRAAAARALGKLGDERALDPLLEALQDEDS 151

Query: 126 PAQEVRETCELALERIEKLKASGSDGS-----SMTE--RSPFMSVDPAAPASSCSSVDML 178
            +        L   R    +A G  G       + E        V  AA ++        
Sbjct: 152 GSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211

Query: 179 REVLLGEEKGM-----YERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQL 233
            E      K +       R AAL AL   G +EAV A+  +L     +L    A  LG L
Sbjct: 212 VEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDALAKALEDEDVILALLAAAALGAL 271

Query: 234 QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVA 293
               A+  L  +L +      VR EAA ALG I  ++++  L    +D +  V ++  + 
Sbjct: 272 DLAEAALPLLLLLIDEANA--VRLEAALALGQIGQEKAVAALLLALEDGDADVRKAALIL 329

Query: 294 LSMLEY 299
           L  ++ 
Sbjct: 330 LEGIDK 335

Length = 335

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 215 LGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGL 274
           L      ++   A  LG+L +  A  AL ++L++    P VR  AAEALG + D +++  
Sbjct: 9   LSDPDPEVRAAAARALGELGDPEALPALLELLKD--PDPEVRRAAAEALGKLGDPEALPA 66

Query: 275 LKEFAKDPE-PIVSQSCEVALS 295
           L E  +D +  +V  +   AL+
Sbjct: 67  LLELLQDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 175 VDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ 234
           ++ L E LL +      R AA  AL   G  EA+ A+++ L      ++   A  LG+L 
Sbjct: 1   LEALLEALLSDPDP-EVRAAAARALGELGDPEALPALLELLKDPDPEVRRAAAEALGKLG 59

Query: 235 NKAASAALSDVLRNVNEHPMVRHEAAEALG 264
           +  A  AL ++L++ ++  +VR  AA AL 
Sbjct: 60  DPEALPALLELLQD-DDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|128837 smart00567, EZ_HEAT, E-Z type HEAT repeats

 Score = 41.6 bits (99), Expect = 7e-06
 Identities = 17/25 (68%), Positives = 19/25 (76%)

Query: 67 HEAAFALGQMQDAEAIPALEAVLND 91
          HEAAFALGQ+ D EA+PAL   L D
Sbjct: 5  HEAAFALGQLGDEEAVPALIKALED 29

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role. Length = 30

>gnl|CDD|128837 smart00567, EZ_HEAT, E-Z type HEAT repeats

 Score = 38.6 bits (91), Expect = 9e-05
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 253 PMVRHEAAEALGSIADDQSIGLLKEFAKDP 282
           P+VRHEAA ALG + D++++  L +  +D 
Sbjct: 1   PLVRHEAAFALGQLGDEEAVPALIKALEDE 30

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role. Length = 30

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 3/151 (1%)

Query: 163 VDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALL 222
           +D      +  + D L ++L  E+  +  R +A  AL   G +EAV  + + L      +
Sbjct: 33  LDDLILELAPEAADELLKLLEDEDLLV--RLSAAVALGELGSEEAVPLLRELLSDEDPRV 90

Query: 223 KHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDP 282
           +   A  LG+L +  A   L ++L   +E+  VR  AA ALG + D++++  L E  +D 
Sbjct: 91  RDAAADALGELGDPEAVPPLVELL-ENDENEGVRAAAARALGKLGDERALDPLLEALQDE 149

Query: 283 EPIVSQSCEVALSMLEYEQLEKSFEYLFMQA 313
           +   + +   A  +       ++   L    
Sbjct: 150 DSGSAAAALDAALLDVRAAAAEALGELGDPE 180

Length = 335

>gnl|CDD|111969 pfam03130, HEAT_PBS, PBS lyase HEAT-like repeat

 Score = 35.5 bits (83), Expect = 0.001
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 65 LAHEAAFALGQMQDAEAIPALEAVLND 91
          +   AA ALG + D EAIPAL   L+D
Sbjct: 1  VRRAAARALGALGDPEAIPALIEALDD 27

This family contains a short bi-helical repeat that is related to pfam02985. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. This family includes the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/F lyase, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six). All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerised to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif. Length = 27

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 240 AALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSML 297
            AL + L + +  P VR  AA ALG + D +++  L E  KDP+P V ++   AL  L
Sbjct: 2   EALLEALLS-DPDPEVRAAAARALGELGDPEALPALLELLKDPDPEVRRAAAEALGKL 58

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
KOG0567	289	consensus HEAT repeat-containing protein [General	100.0
PRK09687	280	putative lyase; Provisional	100.0
PRK09687	280	putative lyase; Provisional	99.96
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.94
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.93
TIGR02270	410	conserved hypothetical protein. Members are found	99.89
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.84
TIGR02270	410	conserved hypothetical protein. Members are found	99.82
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.79
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.77
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.73
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.61
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.61
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.57
KOG0567	289	consensus HEAT repeat-containing protein [General	99.53
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.5
KOG2062	929	consensus 26S proteasome regulatory complex, subun	99.41
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	99.37
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	99.33
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.27
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.22
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.21
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.14
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.08
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.02
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.01
PTZ00429	746	beta-adaptin; Provisional	98.96
PTZ00429	746	beta-adaptin; Provisional	98.96
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.94
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.88
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.75
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.75
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	98.68
COG5116	926	RPN2 26S proteasome regulatory complex component [	98.67
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.62
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	98.58
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.57
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.55
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.52
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.48
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.43
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.41
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.4
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.38
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.36
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.34
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.28
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.26
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.24
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.2
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.19
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.17
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.15
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.15
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.14
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.0
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.95
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.94
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.91
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.89
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.87
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.84
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.82
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.79
KOG2025	892	consensus Chromosome condensation complex Condensi	97.77
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.76
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.75
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.75
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.72
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.66
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.65
KOG2025	892	consensus Chromosome condensation complex Condensi	97.62
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.62
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.6
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.6
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.51
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.45
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.31
PF03130	27	HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP	97.3
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.23
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.22
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	97.22
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.21
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	96.95
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.86
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	96.77
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.76
KOG1293	678	consensus Proteins containing armadillo/beta-caten	96.75
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.74
PF03130	27	HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP	96.74
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.72
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.65
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.63
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.6
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.59
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.51
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	96.45
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.26
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	96.26
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.25
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	96.25
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.05
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	95.98
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	95.8
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.57
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	95.48
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.46
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	95.42
PF05004	309	IFRD: Interferon-related developmental regulator (	95.38
KOG1293	678	consensus Proteins containing armadillo/beta-caten	95.24
KOG0414	1251	consensus Chromosome condensation complex Condensi	95.23
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	95.11
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.11
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.85
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	94.6
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	94.43
KOG4413	524	consensus 26S proteasome regulatory complex, subun	94.24
cd07064	208	AlkD_like_1 A new structural DNA glycosylase conta	94.09
PF05004	309	IFRD: Interferon-related developmental regulator (	94.02
KOG1243	690	consensus Protein kinase [General function predict	93.99
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.91
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	93.81
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	93.64
KOG2032	533	consensus Uncharacterized conserved protein [Funct	93.32
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	93.15
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	93.14
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.14
KOG2005	878	consensus 26S proteasome regulatory complex, subun	93.12
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	93.05
KOG2956	516	consensus CLIP-associating protein [General functi	92.95
KOG4653	982	consensus Uncharacterized conserved protein [Funct	92.79
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	92.74
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	92.71
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	92.5
PF11791	154	Aconitase_B_N: Aconitate B N-terminal domain; Inte	92.37
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	92.18
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	92.0
KOG0414	1251	consensus Chromosome condensation complex Condensi	91.96
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	91.86
cd07064	208	AlkD_like_1 A new structural DNA glycosylase conta	91.68
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	91.25
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	91.15
KOG1243	690	consensus Protein kinase [General function predict	91.04
KOG4199	461	consensus Uncharacterized conserved protein [Funct	90.95
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	90.95
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	90.83
KOG2032	533	consensus Uncharacterized conserved protein [Funct	90.76
PF11791	154	Aconitase_B_N: Aconitate B N-terminal domain; Inte	90.66
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	90.28
KOG2956	516	consensus CLIP-associating protein [General functi	89.76
cd00872	171	PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I,	89.53
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	89.49
KOG2933	334	consensus Uncharacterized conserved protein [Funct	89.32
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	89.31
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	89.26
KOG2005	878	consensus 26S proteasome regulatory complex, subun	89.03
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	88.56
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	88.42
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	88.23
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	87.9
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	87.72
KOG1048	717	consensus Neural adherens junction protein Plakoph	87.56
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	87.15
cd00872	171	PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I,	87.08
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	86.82
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	86.26
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	85.9
cd00870	166	PI3Ka_III Phosphoinositide 3-kinase (PI3K) class I	85.62
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	85.21
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	85.2
cd03561	133	VHS VHS domain family; The VHS domain is present i	85.13
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	85.11
KOG1932	1180	consensus TATA binding protein associated factor [	84.9
cd00870	166	PI3Ka_III Phosphoinositide 3-kinase (PI3K) class I	84.72
cd00864	152	PI3Ka Phosphoinositide 3-kinase family, accessory	84.53
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	84.27
KOG3678	832	consensus SARM protein (with sterile alpha and arm	84.14
KOG0413	1529	consensus Uncharacterized conserved protein relate	83.83
cd00869	169	PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II	83.52
KOG3678	832	consensus SARM protein (with sterile alpha and arm	83.32
PF00613	184	PI3Ka: Phosphoinositide 3-kinase family, accessory	82.64
COG5098	1128	Chromosome condensation complex Condensin, subunit	82.61
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	82.39
KOG2973	353	consensus Uncharacterized conserved protein [Funct	82.22
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	81.82
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	81.35
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	81.25
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	81.07
smart00145	184	PI3Ka Phosphoinositide 3-kinase family, accessory	80.34
COG5098	1128	Chromosome condensation complex Condensin, subunit	80.33
KOG1048	717	consensus Neural adherens junction protein Plakoph	80.27
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	80.25
cd00869	169	PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II	80.14

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.3e-31  Score=213.43  Aligned_cols=286  Identities=53%  Similarity=0.812  Sum_probs=262.0

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCH
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHP   96 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~   96 (318)
                      .++.+.+.|.++..+...|.+|+..|..++.+.++..+.+.+.+++...+...++.||+++...+++.|...+.+.+..|
T Consensus         4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~p   83 (289)
T KOG0567|consen    4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEP   83 (289)
T ss_pred             HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccch
Confidence            57788889998776779999999999999999999999999998899999999999999999999999999999666779


Q ss_pred             HHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHH
Q 021051           97 IVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVD  176 (318)
Q Consensus        97 ~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  176 (318)
                      .||+.|..+|+.++.+...+.+.+ +.+|+-..|+..+..++.++. |.+.....   .....+.+.+|+++ .....+.
T Consensus        84 mvRhEAaealga~~~~~~~~~l~k-~~~dp~~~v~ETc~lAi~rle-~~~~~~~~---~~~~p~~SvdPa~p-~~~ssv~  157 (289)
T KOG0567|consen   84 MVRHEAAEALGAIGDPESLEILTK-YIKDPCKEVRETCELAIKRLE-WKDIIDKI---ANSSPYISVDPAPP-ANLSSVH  157 (289)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHH-HhcCCccccchHHHHHHHHHH-Hhhccccc---cccCccccCCCCCc-cccccHH
Confidence            999999999999999999999999 559999999999999999998 88775542   33455677788766 2345688


Q ss_pred             HHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHH
Q 021051          177 MLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVR  256 (318)
Q Consensus       177 ~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr  256 (318)
                      .|...|.+.+.+.+.|+.|+..|+++|+++++..|.+.+.+++...|.++..++|++..+.++|.|.+.|.+.+++|.||
T Consensus       158 ~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVR  237 (289)
T KOG0567|consen  158 ELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVR  237 (289)
T ss_pred             HHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchHHH
Confidence            88888889998888999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             HHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcc
Q 021051          257 HEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYL  309 (318)
Q Consensus       257 ~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~  309 (318)
                      ..+++|||.|+++++++.|.++++|+++.||..|..||..+.+.++.+ |+|.
T Consensus       238 hEaAeALGaIa~e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~-~ey~  289 (289)
T KOG0567|consen  238 HEAAEALGAIADEDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKE-FEYA  289 (289)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhcccc-cccC
Confidence            999999999999999999999999999999999999999999999988 9983

>PRK09687 putative lyase; Provisional

Probab=100.00  E-value=9.7e-31  Score=223.90  Aligned_cols=247  Identities=18%  Similarity=0.121  Sum_probs=220.8

Q ss_pred             CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCC-----CcHHHHHH
Q 021051           13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDA-----EAIPALEA   87 (318)
Q Consensus        13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~L~~   87 (318)
                      ....+.+.|...|.|++.  .+|..|++.|+.++++.+.+.+.+++.++++.+|..++++||+++.+     .+++.|..
T Consensus        20 ~~~~~~~~L~~~L~d~d~--~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~   97 (280)
T PRK09687         20 CKKLNDDELFRLLDDHNS--LKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNN   97 (280)
T ss_pred             HhhccHHHHHHHHhCCCH--HHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHH
Confidence            456688999999999987  99999999999999999999999999999999999999999999964     37888887


Q ss_pred             hhhcCCCCHHHHHHHHHHHHhcCCCCc------HHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCc
Q 021051           88 VLNDFSLHPIVRHEAAEALGAIGLESN------IPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFM  161 (318)
Q Consensus        88 ~l~~~~~~~~vR~~a~~~L~~~~~~~~------~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~  161 (318)
                      ++. .|+++.||..|+.+||.++....      ++.+.. +..|+++.||..++.+|+.++                   
T Consensus        98 l~~-~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~-~~~D~~~~VR~~a~~aLg~~~-------------------  156 (280)
T PRK09687         98 LAL-EDKSACVRASAINATGHRCKKNPLYSPKIVEQSQI-TAFDKSTNVRFAVAFALSVIN-------------------  156 (280)
T ss_pred             HHh-cCCCHHHHHHHHHHHhcccccccccchHHHHHHHH-HhhCCCHHHHHHHHHHHhccC-------------------
Confidence            744 28999999999999999975433      566666 567999999999999999877                   


Q ss_pred             ccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC--ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchH
Q 021051          162 SVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG--GDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAAS  239 (318)
Q Consensus       162 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~  239 (318)
                               ++.+++.|+..+.++++.  +|..|+.+||.++  ++.+.+.|...+.|.++.||..|+.+||+++++.++
T Consensus       157 ---------~~~ai~~L~~~L~d~~~~--VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av  225 (280)
T PRK09687        157 ---------DEAAIPLLINLLKDPNGD--VRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVL  225 (280)
T ss_pred             ---------CHHHHHHHHHHhcCCCHH--HHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHH
Confidence                     345899999999988875  5999999999875  678999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhc-CCCHHHHHHHHHHHHhc
Q 021051          240 AALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAK-DPEPIVSQSCEVALSML  297 (318)
Q Consensus       240 ~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-~~~~~vr~~a~~aL~~l  297 (318)
                      |.|++.+++.  +  +|..++.+||.+|++.+++.|.++++ ++++.|+..|.++|.++
T Consensus       226 ~~Li~~L~~~--~--~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~~  280 (280)
T PRK09687        226 SVLIKELKKG--T--VGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLKRS  280 (280)
T ss_pred             HHHHHHHcCC--c--hHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHhcC
Confidence            9999999875  4  78999999999999999999999987 78999999999999763

>PRK09687 putative lyase; Provisional

Probab=99.96  E-value=1e-26  Score=199.20  Aligned_cols=229  Identities=21%  Similarity=0.176  Sum_probs=201.1

Q ss_pred             cCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC-----cHHHHH
Q 021051           45 LKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES-----NIPLLK  119 (318)
Q Consensus        45 ~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~-----~~~~L~  119 (318)
                      ....-..+.|.+.|.|++..+|..++++|+.++...+.+.+..++.  ++++.+|..++.+|+.++.+.     +++.|.
T Consensus        19 ~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~   96 (280)
T PRK09687         19 QCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILN   96 (280)
T ss_pred             HHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence            3344678999999999999999999999999999899999999988  899999999999999999754     788888


Q ss_pred             hhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHH
Q 021051          120 NSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFAL  199 (318)
Q Consensus       120 ~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L  199 (318)
                      ..+.+|+++.||..++.+|+.++. ..                ..+     ....++.+...+.|+++.  ||..++.+|
T Consensus        97 ~l~~~D~d~~VR~~A~~aLG~~~~-~~----------------~~~-----~~~a~~~l~~~~~D~~~~--VR~~a~~aL  152 (280)
T PRK09687         97 NLALEDKSACVRASAINATGHRCK-KN----------------PLY-----SPKIVEQSQITAFDKSTN--VRFAVAFAL  152 (280)
T ss_pred             HHHhcCCCHHHHHHHHHHHhcccc-cc----------------ccc-----chHHHHHHHHHhhCCCHH--HHHHHHHHH
Confidence            866899999999999999998760 00                000     123567777888888776  599999999


Q ss_pred             HhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccC--CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 021051          200 RNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ--NKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKE  277 (318)
Q Consensus       200 ~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~  277 (318)
                      ++++++.+++.|..+++|+++.||..|+.+||.++  ++.+.+.|+..+.|.  ++.||..|+++||+++++.+++.|.+
T Consensus       153 g~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~~~~~av~~Li~  230 (280)
T PRK09687        153 SVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALRKDKRVLSVLIK  230 (280)
T ss_pred             hccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHccCChhHHHHHHH
Confidence            99999999999999999999999999999999985  678999999999987  89999999999999999999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHhchhhhcc
Q 021051          278 FAKDPEPIVSQSCEVALSMLEYEQLE  303 (318)
Q Consensus       278 ~l~~~~~~vr~~a~~aL~~l~~~~~~  303 (318)
                      .+++++  ++..++.||++++.+.+.
T Consensus       231 ~L~~~~--~~~~a~~ALg~ig~~~a~  254 (280)
T PRK09687        231 ELKKGT--VGDLIIEAAGELGDKTLL  254 (280)
T ss_pred             HHcCCc--hHHHHHHHHHhcCCHhHH
Confidence            999866  788999999999987653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.94  E-value=4.4e-25  Score=217.83  Aligned_cols=271  Identities=24%  Similarity=0.222  Sum_probs=197.7

Q ss_pred             ccCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCC-CCcHHHHHHhh
Q 021051           11 FKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQD-AEAIPALEAVL   89 (318)
Q Consensus        11 ~~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l   89 (318)
                      +.+....++.|.+.|.|+++  .+|..|+..|+.++.+.+++.|.++|+|+++.||..|+.+|+++.. ....+.|...|
T Consensus       616 ~~l~~~~~~~L~~~L~D~d~--~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L  693 (897)
T PRK13800        616 LALDAPSVAELAPYLADPDP--GVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHL  693 (897)
T ss_pred             HhccchhHHHHHHHhcCCCH--HHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHh
Confidence            34666788999999999998  9999999999999999999999999999999999999999998853 24567888888


Q ss_pred             hcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccC-CCC-
Q 021051           90 NDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVD-PAA-  167 (318)
Q Consensus        90 ~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-  167 (318)
                      .  ++++.||..|+.+|+.++... ...|.+ ++.|+++.||..++.+|+.+..    ...+...+.+....... .+. 
T Consensus       694 ~--~~d~~VR~~A~~aL~~~~~~~-~~~l~~-~L~D~d~~VR~~Av~aL~~~~~----~~~l~~~l~D~~~~VR~~aa~a  765 (897)
T PRK13800        694 G--SPDPVVRAAALDVLRALRAGD-AALFAA-ALGDPDHRVRIEAVRALVSVDD----VESVAGAATDENREVRIAVAKG  765 (897)
T ss_pred             c--CCCHHHHHHHHHHHHhhccCC-HHHHHH-HhcCCCHHHHHHHHHHHhcccC----cHHHHHHhcCCCHHHHHHHHHH
Confidence            8  899999999999999887543 356666 5689999999999999997651    11111111111110000 000 


Q ss_pred             --CCC--CCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhH-HHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHH
Q 021051          168 --PAS--SCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEA-VSAIIDSLGATSALLKHEVAYVLGQLQNKAASAAL  242 (318)
Q Consensus       168 --~~~--~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~-~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L  242 (318)
                        .+.  .....+.|..++.|+++.  +|..|+.+|+.++.... ...+...+.|++|.||..|+.+|+.++.+++++.|
T Consensus       766 L~~~~~~~~~~~~~L~~ll~D~d~~--VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L  843 (897)
T PRK13800        766 LATLGAGGAPAGDAVRALTGDPDPL--VRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPAL  843 (897)
T ss_pred             HHHhccccchhHHHHHHHhcCCCHH--HHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHH
Confidence              001  112356677777766644  47777777777776543 35667777777777777777777777777777777


Q ss_pred             HHHHhccCCCHHHHHHHHHHHhcc-CChhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 021051          243 SDVLRNVNEHPMVRHEAAEALGSI-ADDQSIGLLKEFAKDPEPIVSQSCEVALS  295 (318)
Q Consensus       243 ~~~l~~~~~~~~vr~~a~~aL~~~-~~~~~~~~L~~~l~~~~~~vr~~a~~aL~  295 (318)
                      ..++.|+  ++.||.+|+++|+.+ +++.+.+.|..+++|++..||.+|..||.
T Consensus       844 ~~~L~D~--~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        844 VEALTDP--HLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHHhcCC--CHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            7777776  777777777777777 46667777777777777777777777775

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.93  E-value=7e-24  Score=209.33  Aligned_cols=238  Identities=22%  Similarity=0.184  Sum_probs=172.0

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcC
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDF   92 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~   92 (318)
                      ++..++.|.+.|.|+++  .+|..|+..|+.+.. ....+.|...|+++++.||..|+.+|+.++.. ....|...+.  
T Consensus       650 ~~~~~~~L~~aL~D~d~--~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~--  724 (897)
T PRK13800        650 PPGFGPALVAALGDGAA--AVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAG-DAALFAAALG--  724 (897)
T ss_pred             chhHHHHHHHHHcCCCH--HHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccC-CHHHHHHHhc--
Confidence            45677888888888876  888888888887743 23456777778888888888888888877653 3456677777  


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc--CccccccccCCCCcccCC-C---
Q 021051           93 SLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKAS--GSDGSSMTERSPFMSVDP-A---  166 (318)
Q Consensus        93 ~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~--~~~~~~~l~~~~~~~~~~-~---  166 (318)
                      |+++.||..|+.+|+.++..   +.|.. +++|+++.||..++.+|+.+++ ...  .+.+..++.+.+...... .   
T Consensus       725 D~d~~VR~~Av~aL~~~~~~---~~l~~-~l~D~~~~VR~~aa~aL~~~~~-~~~~~~~~L~~ll~D~d~~VR~aA~~aL  799 (897)
T PRK13800        725 DPDHRVRIEAVRALVSVDDV---ESVAG-AATDENREVRIAVAKGLATLGA-GGAPAGDAVRALTGDPDPLVRAAALAAL  799 (897)
T ss_pred             CCCHHHHHHHHHHHhcccCc---HHHHH-HhcCCCHHHHHHHHHHHHHhcc-ccchhHHHHHHHhcCCCHHHHHHHHHHH
Confidence            78888888888888877543   33455 4567777777777777777651 111  011222222211100000 0   


Q ss_pred             CCCCCC-ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhcc-CCcchHHHHHH
Q 021051          167 APASSC-SSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQL-QNKAASAALSD  244 (318)
Q Consensus       167 ~~~~~~-~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~-~~~~~~~~L~~  244 (318)
                      ...+.. ...+.+...+.++++.  +|..|+.+|+.++.+++++.|..+|+|+++.||..|+.+|+.+ +++.+.+.|..
T Consensus       800 g~~g~~~~~~~~l~~aL~d~d~~--VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~  877 (897)
T PRK13800        800 AELGCPPDDVAAATAALRASAWQ--VRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTT  877 (897)
T ss_pred             HhcCCcchhHHHHHHHhcCCChH--HHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            011122 2346788999888876  4999999999999999999999999999999999999999998 47789999999


Q ss_pred             HHhccCCCHHHHHHHHHHHhc
Q 021051          245 VLRNVNEHPMVRHEAAEALGS  265 (318)
Q Consensus       245 ~l~~~~~~~~vr~~a~~aL~~  265 (318)
                      .++|.  ++.||..|.++|..
T Consensus       878 al~D~--d~~Vr~~A~~aL~~  896 (897)
T PRK13800        878 ALTDS--DADVRAYARRALAH  896 (897)
T ss_pred             HHhCC--CHHHHHHHHHHHhh
Confidence            99987  99999999999863

>TIGR02270 conserved hypothetical protein

Probab=99.89  E-value=8.8e-21  Score=169.63  Aligned_cols=244  Identities=21%  Similarity=0.168  Sum_probs=215.4

Q ss_pred             hhhHHHHHHhhc-CCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCC
Q 021051           15 PEMEKFLCDRLV-DPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFS   93 (318)
Q Consensus        15 ~~~~~~L~~~L~-~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~   93 (318)
                      +..++.++..|. ++++  .++..++..+.....+..++.|++.|.|.++.+|..++.+||.++...+.+.|..+++  +
T Consensus        53 ~~a~~~L~~aL~~d~~~--ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~--~  128 (410)
T TIGR02270        53 KAATELLVSALAEADEP--GRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLA--A  128 (410)
T ss_pred             HhHHHHHHHHHhhCCCh--hHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhc--C
Confidence            457888899995 5555  8899999999888777779999999999999999999999999999999999999999  8


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCc
Q 021051           94 LHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCS  173 (318)
Q Consensus        94 ~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  173 (318)
                      +++.+|..++.+++..+ .+..+.+.. +++|+++.||..++.+|+.++                            ...
T Consensus       129 ~~p~vR~aal~al~~r~-~~~~~~L~~-~L~d~d~~Vra~A~raLG~l~----------------------------~~~  178 (410)
T TIGR02270       129 SEPPGRAIGLAALGAHR-HDPGPALEA-ALTHEDALVRAAALRALGELP----------------------------RRL  178 (410)
T ss_pred             CChHHHHHHHHHHHhhc-cChHHHHHH-HhcCCCHHHHHHHHHHHHhhc----------------------------ccc
Confidence            99999999999999876 457788888 568999999999999999887                            234


Q ss_pred             cHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCH
Q 021051          174 SVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHP  253 (318)
Q Consensus       174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~  253 (318)
                      ..+.|...+.+.++.+  |..|+.+++.+|+..+...+.....+.....+..+..+++..+++.+++.|..+++++    
T Consensus       179 a~~~L~~al~d~~~~V--R~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~----  252 (410)
T TIGR02270       179 SESTLRLYLRDSDPEV--RFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA----  252 (410)
T ss_pred             chHHHHHHHcCCCHHH--HHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh----
Confidence            6888998888888875  9999999999999999998888777777777777777888889999999999999875    


Q ss_pred             HHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          254 MVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       254 ~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      .+|..++.++|.+|++.+++.|+..+.++.  +++.|..++++|..-
T Consensus       253 ~vr~~a~~AlG~lg~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       253 ATRREALRAVGLVGDVEAAPWCLEAMREPP--WARLAGEAFSLITGM  297 (410)
T ss_pred             hhHHHHHHHHHHcCCcchHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence            399999999999999999999999998765  999999999999763

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.84  E-value=2e-18  Score=153.55  Aligned_cols=253  Identities=26%  Similarity=0.296  Sum_probs=227.4

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCC
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLH   95 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~   95 (318)
                      ...+.+.+.+.+++.  .+|..|...++.++.+++++.+...+.|.++.+|..|+.+||.++.+.+++.|++++.+ +++
T Consensus        43 ~~~~~~~~~l~~~~~--~vr~~aa~~l~~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~-d~~  119 (335)
T COG1413          43 EAADELLKLLEDEDL--LVRLSAAVALGELGSEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN-DEN  119 (335)
T ss_pred             hhHHHHHHHHcCCCH--HHHHHHHHHHhhhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc-CCc
Confidence            578899999999965  99999999999999999999999999999999999999999999999999999999995 799


Q ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHhhhccCCC----------H--HHHHHHHHHHHHHHhhhccCccccccccCCCCccc
Q 021051           96 PIVRHEAAEALGAIGLESNIPLLKNSLVSDPA----------Q--EVRETCELALERIEKLKASGSDGSSMTERSPFMSV  163 (318)
Q Consensus        96 ~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~----------~--~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~  163 (318)
                      ..||..++.+|+.++++..+..+.. ..+++.          +  .+|..++.+++.++                     
T Consensus       120 ~~vR~~aa~aL~~~~~~~a~~~l~~-~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~---------------------  177 (335)
T COG1413         120 EGVRAAAARALGKLGDERALDPLLE-ALQDEDSGSAAAALDAALLDVRAAAAEALGELG---------------------  177 (335)
T ss_pred             HhHHHHHHHHHHhcCchhhhHHHHH-HhccchhhhhhhhccchHHHHHHHHHHHHHHcC---------------------
Confidence            9999999999999999998888888 445544          2  58999999999887                     


Q ss_pred             CCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh--hHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHH
Q 021051          164 DPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD--EAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAA  241 (318)
Q Consensus       164 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~--~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~  241 (318)
                             ++...+.+...+.+....  +|..|..+|+.++..  ...+.+...+.+.++.+|..++.+||.++.....+.
T Consensus       178 -------~~~~~~~l~~~l~~~~~~--vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~  248 (335)
T COG1413         178 -------DPEAIPLLIELLEDEDAD--VRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDA  248 (335)
T ss_pred             -------ChhhhHHHHHHHhCchHH--HHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHH
Confidence                   345788899999888875  599999999999887  677889999999999999999999999999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          242 LSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       242 L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      +...+.+.  ++.++..+...++..+.......+...+.+....++..+..++..++......
T Consensus       249 l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  309 (335)
T COG1413         249 LAKALEDE--DVILALLAAAALGALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKAVA  309 (335)
T ss_pred             HHHHHhcc--chHHHHHHHHHhcccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccchHH
Confidence            99999987  89999999999998877777888888888888899999999999988876644

>TIGR02270 conserved hypothetical protein

Probab=99.82  E-value=3.9e-18  Score=152.66  Aligned_cols=232  Identities=18%  Similarity=0.061  Sum_probs=199.8

Q ss_pred             HHHHH-HHHHhccCCCChHHHHHHhc-cCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC
Q 021051           34 ERFRA-LFSLRNLKGPGPRDALIRAT-KDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL  111 (318)
Q Consensus        34 ~r~~A-~~~l~~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~  111 (318)
                      .|..+ +..|...+ +.+++.++..| .++++.++..++.++........++.|.+.+.  +.++.||..++++|+.+++
T Consensus        39 eRL~AhLdgL~~~G-~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~--d~~~~vr~aaa~ALg~i~~  115 (410)
T TIGR02270        39 ERLLAHVDGLVLAG-KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQ--AGPEGLCAGIQAALGWLGG  115 (410)
T ss_pred             HHHHHHHHHHHHhh-HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhc--CCCHHHHHHHHHHHhcCCc
Confidence            34443 34444445 68999999999 57889999999999988777666999999999  8999999999999999999


Q ss_pred             CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHH
Q 021051          112 ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYE  191 (318)
Q Consensus       112 ~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~  191 (318)
                      +...+.|.. +++++++.||..++.+++...                             ....+.+..++.++++.  |
T Consensus       116 ~~a~~~L~~-~L~~~~p~vR~aal~al~~r~-----------------------------~~~~~~L~~~L~d~d~~--V  163 (410)
T TIGR02270       116 RQAEPWLEP-LLAASEPPGRAIGLAALGAHR-----------------------------HDPGPALEAALTHEDAL--V  163 (410)
T ss_pred             hHHHHHHHH-HhcCCChHHHHHHHHHHHhhc-----------------------------cChHHHHHHHhcCCCHH--H
Confidence            999999999 668999999999998888654                             22477899999877766  5


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhh
Q 021051          192 RYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQS  271 (318)
Q Consensus       192 r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~  271 (318)
                      |..|+.+||.++.....+.|...+.|.++.||..|+.+++.++.+.+.+.+..+....  ++.++..+...++..+++.+
T Consensus       164 ra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~~~~~a  241 (410)
T TIGR02270       164 RAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVAGGPDA  241 (410)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhcc--CccHHHHHHHHHHhCCchhH
Confidence            9999999999999999999999999999999999999999999999999999877665  66677777777877799999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          272 IGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       272 ~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      ++.|..+++++.  +|..++.+++.++.+.+..
T Consensus       242 ~~~L~~ll~d~~--vr~~a~~AlG~lg~p~av~  272 (410)
T TIGR02270       242 QAWLRELLQAAA--TRREALRAVGLVGDVEAAP  272 (410)
T ss_pred             HHHHHHHhcChh--hHHHHHHHHHHcCCcchHH
Confidence            999999999865  9999999999998887644

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.79  E-value=6e-17  Score=144.11  Aligned_cols=249  Identities=31%  Similarity=0.349  Sum_probs=222.5

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhcc-CCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcC
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATK-DSSNLLAHEAAFALGQMQDAEAIPALEAVLNDF   92 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~   92 (318)
                      ....++.+.+.|.+.++  .+|..|+..|+.++.+.+++.|++++. |.+..+|..++++|+.+++..++..+.+.+.  
T Consensus        72 ~~~av~~l~~~l~d~~~--~vr~~a~~aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~--  147 (335)
T COG1413          72 SEEAVPLLRELLSDEDP--RVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQ--  147 (335)
T ss_pred             hHHHHHHHHHHhcCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhc--
Confidence            46788999999999997  999999999999999999999999997 7999999999999999999999999999999  


Q ss_pred             CCC------------HHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCC
Q 021051           93 SLH------------PIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPF  160 (318)
Q Consensus        93 ~~~------------~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~  160 (318)
                      ++.            ..+|..++.+|+.++++...+.+.. +..+.+..||..++.+|+.++.                 
T Consensus       148 ~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~-~l~~~~~~vr~~Aa~aL~~~~~-----------------  209 (335)
T COG1413         148 DEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIE-LLEDEDADVRRAAASALGQLGS-----------------  209 (335)
T ss_pred             cchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHH-HHhCchHHHHHHHHHHHHHhhc-----------------
Confidence            444            3689999999999999999999999 6689999999999999999881                 


Q ss_pred             cccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHH
Q 021051          161 MSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASA  240 (318)
Q Consensus       161 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~  240 (318)
                      .         .......+...+.+++..+  |..++.+++.++..+....+...+.+.++.++..+..+++..+......
T Consensus       210 ~---------~~~~~~~l~~~~~~~~~~v--r~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  278 (335)
T COG1413         210 E---------NVEAADLLVKALSDESLEV--RKAALLALGEIGDEEAVDALAKALEDEDVILALLAAAALGALDLAEAAL  278 (335)
T ss_pred             c---------hhhHHHHHHHHhcCCCHHH--HHHHHHHhcccCcchhHHHHHHHHhccchHHHHHHHHHhcccCchhhHH
Confidence            0         0135678888888888775  9999999999999999999999999999999999999999887777778


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051          241 ALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       241 ~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l  297 (318)
                      .+...+.+.  .+.+|..+..+++.++.......+.....+.+..++..+...+..+
T Consensus       279 ~l~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  333 (335)
T COG1413         279 PLLLLLIDE--ANAVRLEAALALGQIGQEKAVAALLLALEDGDADVRKAALILLEGI  333 (335)
T ss_pred             HHHHHhhcc--hhhHHHHHHHHHHhhcccchHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence            888888876  8999999999999999999999999999999888888888776654

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=7.6e-17  Score=144.67  Aligned_cols=270  Identities=22%  Similarity=0.280  Sum_probs=216.2

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhcc-CCCHHHHHHHHHHHhccCC------
Q 021051           18 EKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATK-DSSNLLAHEAAFALGQMQD------   78 (318)
Q Consensus        18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~------   78 (318)
                      ...+.+.+.++++  ..+..+...+.++.+            ...++.+.+.|. +.++.++..|+|+|..+..      
T Consensus        68 ~~~~~~~~~S~~~--~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T  145 (514)
T KOG0166|consen   68 LELMLAALYSDDP--QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT  145 (514)
T ss_pred             hHHHHHHHhCCCH--HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence            5567777888876  778888888776643            256888888885 6779999999999988763      


Q ss_pred             -----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCH-HHHHHHHHHHHHH
Q 021051           79 -----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQ-EVRETCELALERI  141 (318)
Q Consensus        79 -----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~-~vr~~a~~aL~~~  141 (318)
                           ..++|.|..++.  +++..|+..|+.+||++..           ...++.|...+ ..+++ ...+.+.|+|.++
T Consensus       146 ~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l-~~~~~~~~lRn~tW~LsNl  222 (514)
T KOG0166|consen  146 KVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLL-NKSDKLSMLRNATWTLSNL  222 (514)
T ss_pred             cccccCCchHHHHHHhc--CCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHh-ccccchHHHHHHHHHHHHH
Confidence                 468999999999  8999999999999999852           34677777744 44444 7888999999998


Q ss_pred             HhhhccCccccccccCCCCcccCCCCCCC-CCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHH
Q 021051          142 EKLKASGSDGSSMTERSPFMSVDPAAPAS-SCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVS  209 (318)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~  209 (318)
                      ..                  ..+|.+++. -...+|.|..++.+.+..+  ...|.+++..+.+           ...++
T Consensus       223 cr------------------gk~P~P~~~~v~~iLp~L~~ll~~~D~~V--l~Da~WAlsyLsdg~ne~iq~vi~~gvv~  282 (514)
T KOG0166|consen  223 CR------------------GKNPSPPFDVVAPILPALLRLLHSTDEEV--LTDACWALSYLTDGSNEKIQMVIDAGVVP  282 (514)
T ss_pred             Hc------------------CCCCCCcHHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHhcCChHHHHHHHHccchH
Confidence            71                  112333321 2457899999999998875  8999999998753           26678


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHhccC-----------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccC-----------
Q 021051          210 AIIDSLGATSALLKHEVAYVLGQLQ-----------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIA-----------  267 (318)
Q Consensus       210 ~l~~~l~d~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-----------  267 (318)
                      .|+++|.+.++.++..|+.++|.+-           +..++|.|..++...+ ...+|.+|++.+++|.           
T Consensus       283 ~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~-~~~ikkEAcW~iSNItAG~~~qiqaVi  361 (514)
T KOG0166|consen  283 RLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP-KESIKKEACWTISNITAGNQEQIQAVI  361 (514)
T ss_pred             HHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCc-chhHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            8999999999999999999999964           3567899999998432 4569999999999985           


Q ss_pred             ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcccccC
Q 021051          268 DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQA  313 (318)
Q Consensus       268 ~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~~~  313 (318)
                      +.+.+|.|..++...+-.+|++|+||++++....+.++..|++.+.
T Consensus       362 da~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~g  407 (514)
T KOG0166|consen  362 DANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQG  407 (514)
T ss_pred             HcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcC
Confidence            3457899999999988999999999999999999989888887653

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=6.4e-16  Score=138.81  Aligned_cols=278  Identities=19%  Similarity=0.196  Sum_probs=213.7

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------   78 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------   78 (318)
                      ..++.+.+.|...+. ...++.|+++|.++..           ..+++.+++++.+++..|+..|+|+||.+..      
T Consensus       109 G~v~~lV~~l~~~~~-~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R  187 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDN-PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR  187 (514)
T ss_pred             CcHHHHHHHHccCCC-hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence            578889999975542 3899999999999865           4689999999999999999999999999764      


Q ss_pred             -----CCcHHHHHHhhhcCCCCH-HHHHHHHHHHHhcC---CC--------CcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051           79 -----AEAIPALEAVLNDFSLHP-IVRHEAAEALGAIG---LE--------SNIPLLKNSLVSDPAQEVRETCELALERI  141 (318)
Q Consensus        79 -----~~~~~~L~~~l~~~~~~~-~vR~~a~~~L~~~~---~~--------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~  141 (318)
                           ..+++.|+.++.  .+++ ...+.+.++|+++.   +|        ..+|.|.. +..+.|+.|...+.|++..+
T Consensus       188 d~vl~~g~l~pLl~~l~--~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~-ll~~~D~~Vl~Da~WAlsyL  264 (514)
T KOG0166|consen  188 DYVLSCGALDPLLRLLN--KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLR-LLHSTDEEVLTDACWALSYL  264 (514)
T ss_pred             HHHHhhcchHHHHHHhc--cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHH
Confidence                 257888999998  4443 55667777777664   22        25788888 67899999999999999987


Q ss_pred             HhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC--CC---------hhHHHH
Q 021051          142 EKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH--GG---------DEAVSA  210 (318)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~--~~---------~~~~~~  210 (318)
                      .  +++.+. ..+              ..+...++.|+++|.+++..+  +.-|+.++|++  |+         ..+++.
T Consensus       265 s--dg~ne~-iq~--------------vi~~gvv~~LV~lL~~~~~~v--~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~  325 (514)
T KOG0166|consen  265 T--DGSNEK-IQM--------------VIDAGVVPRLVDLLGHSSPKV--VTPALRAIGNIVTGSDEQTQVVINSGALPV  325 (514)
T ss_pred             h--cCChHH-HHH--------------HHHccchHHHHHHHcCCCccc--ccHHHhhccceeeccHHHHHHHHhcChHHH
Confidence            6  111111 000              012457899999999999886  88999999996  32         367788


Q ss_pred             HHHHhC-CCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---Ch------
Q 021051          211 IIDSLG-ATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---DD------  269 (318)
Q Consensus       211 l~~~l~-d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~~------  269 (318)
                      |..++. ++...+|.+|++.+..+..           ...+|.|+.+++..  +-.+|++|+++++++.   ++      
T Consensus       326 l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~--ef~~rKEAawaIsN~ts~g~~~qi~yL  403 (514)
T KOG0166|consen  326 LSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA--EFDIRKEAAWAISNLTSSGTPEQIKYL  403 (514)
T ss_pred             HHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc--chHHHHHHHHHHHhhcccCCHHHHHHH
Confidence            888887 5566699999999999753           46789999999987  7899999999999974   33      


Q ss_pred             ---hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchh----hhcccccCCCCCC
Q 021051          270 ---QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKS----FEYLFMQAPLMQV  318 (318)
Q Consensus       270 ---~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~----~~~~~~~~~~~~~  318 (318)
                         ++++.+..++.-.+..+-..+..+|+.+......+.    -.|..|+++|+|.
T Consensus       404 v~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggl  459 (514)
T KOG0166|consen  404 VEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGL  459 (514)
T ss_pred             HHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccCh
Confidence               356667777766777778888888888765544342    3577899999874

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.61  E-value=9.5e-14  Score=142.33  Aligned_cols=266  Identities=18%  Similarity=0.135  Sum_probs=213.5

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------   78 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------   78 (318)
                      ..++.|+++|.+++.  ..+..|++.++.+..           ..+++.|+++|.+++..+|..|+|+|+.+..      
T Consensus       446 ggIp~LV~LL~s~s~--~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir  523 (2102)
T PLN03200        446 EGVQLLISLLGLSSE--QQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR  523 (2102)
T ss_pred             CcHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence            378899999999886  899999999977643           4789999999999999999999999998652      


Q ss_pred             -----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc---CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcc
Q 021051           79 -----AEAIPALEAVLNDFSLHPIVRHEAAEALGAI---GLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSD  150 (318)
Q Consensus        79 -----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~---~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~  150 (318)
                           ..+++.|+++|.  +.++.++..|+.+|.++   ++.+.++.+.. +...+++.++..++.+++++-.-.+..+ 
T Consensus       524 ~iV~~aGAIppLV~LL~--sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~-LLlsdd~~~~~~aL~vLgnIlsl~~~~d-  599 (2102)
T PLN03200        524 ACVESAGAVPALLWLLK--NGGPKGQEIAAKTLTKLVRTADAATISQLTA-LLLGDLPESKVHVLDVLGHVLSVASLED-  599 (2102)
T ss_pred             HHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHhccchhHHHHHHH-HhcCCChhHHHHHHHHHHHHHhhcchhH-
Confidence                 367899999999  77899999999999887   56777888888 5567788999999999988751000000 


Q ss_pred             ccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhCCCC
Q 021051          151 GSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAIIDSLGATS  219 (318)
Q Consensus       151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~d~~  219 (318)
                               .....    .....+++.|.+++.+++..+  +..|+++|.++..           .++++.++.++.+.+
T Consensus       600 ---------~~~~g----~~~~ggL~~Lv~LL~sgs~~i--kk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~  664 (2102)
T PLN03200        600 ---------LVREG----SAANDALRTLIQLLSSSKEET--QEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT  664 (2102)
T ss_pred             ---------HHHHh----hhccccHHHHHHHHcCCCHHH--HHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC
Confidence                     00000    001347999999999988775  8999999988743           357889999999999


Q ss_pred             HHHHHHHHHHHhccCC------------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC----------ChhhHHHHHH
Q 021051          220 ALLKHEVAYVLGQLQN------------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA----------DDQSIGLLKE  277 (318)
Q Consensus       220 ~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~  277 (318)
                      ..++.+++++|+.+..            ..+++.|++++.+.  +..++..++.+|+++-          ..+.++.|.+
T Consensus       665 ~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~--d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~  742 (2102)
T PLN03200        665 EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS--SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTR  742 (2102)
T ss_pred             hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC--ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHH
Confidence            9999999999887641            35789999999987  8899999999999874          2346899999


Q ss_pred             hhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          278 FAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       278 ~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      ++++.++.+|..|.+||.++-.+.+..
T Consensus       743 lLr~G~~~~k~~Aa~AL~~L~~~~~~~  769 (2102)
T PLN03200        743 VLREGTLEGKRNAARALAQLLKHFPVD  769 (2102)
T ss_pred             HHHhCChHHHHHHHHHHHHHHhCCChh
Confidence            999999999999999999887776644

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.61  E-value=2.9e-14  Score=120.14  Aligned_cols=270  Identities=20%  Similarity=0.251  Sum_probs=204.9

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhc-cCCCHHHHHHHHHHHhccCC-----
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRAT-KDSSNLLAHEAAFALGQMQD-----   78 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-----   78 (318)
                      -.+.|...|.+++-  +....|..-+.++-+            ...++-+++++ .......+..|+|+|..+..     
T Consensus        72 elp~lt~~l~SdDi--e~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q  149 (526)
T COG5064          72 ELPQLTQQLFSDDI--EQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ  149 (526)
T ss_pred             hhHHHHHHHhhhHH--HHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence            45778888888875  788888887776643            24678888888 56677899999999988763     


Q ss_pred             ------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-C----------CcHHHHHhhhccC-CCHHHHHHHHHHHHH
Q 021051           79 ------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-E----------SNIPLLKNSLVSD-PAQEVRETCELALER  140 (318)
Q Consensus        79 ------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-~----------~~~~~L~~~l~~d-~~~~vr~~a~~aL~~  140 (318)
                            ..++|.+.++|.  +.+..||..++++||++.. .          .+++.+..++.+. .+-...+.+-|.|.+
T Consensus       150 TkvVvd~~AVPlfiqlL~--s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN  227 (526)
T COG5064         150 TKVVVDAGAVPLFIQLLS--STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN  227 (526)
T ss_pred             eEEEEeCCchHHHHHHHc--CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence                  368999999999  8999999999999999852 2          3566666644322 234777888999998


Q ss_pred             HHhhhccCccccccccCCCCcccCCCCCC-CCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----------hHH
Q 021051          141 IEKLKASGSDGSSMTERSPFMSVDPAAPA-SSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----------EAV  208 (318)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----------~~~  208 (318)
                      +.+   +.               +|-+.. .-.+++|.|.+++..-++++  -..|.+++..+.+.           ...
T Consensus       228 lcR---Gk---------------nP~P~w~~isqalpiL~KLiys~D~ev--lvDA~WAiSYlsDg~~E~i~avld~g~~  287 (526)
T COG5064         228 LCR---GK---------------NPPPDWSNISQALPILAKLIYSRDPEV--LVDACWAISYLSDGPNEKIQAVLDVGIP  287 (526)
T ss_pred             hhC---CC---------------CCCCchHHHHHHHHHHHHHHhhcCHHH--HHHHHHHHHHhccCcHHHHHHHHhcCCc
Confidence            871   11               111100 01457899999998888875  78899998887542           333


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC----------
Q 021051          209 SAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA----------  267 (318)
Q Consensus       209 ~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----------  267 (318)
                      +.|.++|.+++..+...|+...|.+-.           -.+++.+..++.++  ...+|++|++.+.+|.          
T Consensus       288 ~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~--ke~irKEaCWTiSNITAGnteqiqav  365 (526)
T COG5064         288 GRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP--KENIRKEACWTISNITAGNTEQIQAV  365 (526)
T ss_pred             HHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh--hhhhhhhhheeecccccCCHHHHHHH
Confidence            567889999999999999999998742           34678889999987  5689999999999984          


Q ss_pred             -ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch--hhhccccc
Q 021051          268 -DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK--SFEYLFMQ  312 (318)
Q Consensus       268 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~--~~~~~~~~  312 (318)
                       +.+.+|.|++++...+-.+|++|+||+.+..++....  .+.|++-|
T Consensus       366 id~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~q  413 (526)
T COG5064         366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQ  413 (526)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHc
Confidence             3456899999999999999999999999987765432  26666654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.57  E-value=6.8e-13  Score=136.19  Aligned_cols=253  Identities=20%  Similarity=0.218  Sum_probs=206.6

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------   78 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------   78 (318)
                      +.++.|+.+|...+.  +++..+++.+..+..           ...++.|+++|++.+..+|..+++.++.+..      
T Consensus       404 daik~LV~LL~~~~~--evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATA--DVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCH--HHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            455667777777776  899999999876653           3589999999999999999999999987642      


Q ss_pred             -----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           79 -----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        79 -----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                           ..++|.|.++|.  +++..+|..|+.+|+++.           ..+.++.|.+ ++++.++.++..++++|.++.
T Consensus       482 ~aIieaGaIP~LV~LL~--s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~-LL~sgd~~~q~~Aa~AL~nLi  558 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLE--TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLW-LLKNGGPKGQEIAAKTLTKLV  558 (2102)
T ss_pred             HHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHH
Confidence                 367999999999  789999999999999875           2467888999 567889999999999999886


Q ss_pred             hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC--------------ChhHH
Q 021051          143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG--------------GDEAV  208 (318)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--------------~~~~~  208 (318)
                      .  .+                       +...++.+..++..+++..  +..++..++++-              ...++
T Consensus       559 ~--~~-----------------------d~~~I~~Lv~LLlsdd~~~--~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL  611 (2102)
T PLN03200        559 R--TA-----------------------DAATISQLTALLLGDLPES--KVHVLDVLGHVLSVASLEDLVREGSAANDAL  611 (2102)
T ss_pred             h--cc-----------------------chhHHHHHHHHhcCCChhH--HHHHHHHHHHHHhhcchhHHHHHhhhccccH
Confidence            0  11                       1235788888898877765  777788876651              23588


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---C------
Q 021051          209 SAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---D------  268 (318)
Q Consensus       209 ~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~------  268 (318)
                      +.|.+++++.+..++..|+.+|..+..           .++++.|+.++.+.  +..++..++++|+.+.   .      
T Consensus       612 ~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~--~~~v~keAA~AL~nL~~~~~~~q~~~  689 (2102)
T PLN03200        612 RTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN--TEAVATQSARALAALSRSIKENRKVS  689 (2102)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--ChHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            999999999999999999999988743           45789999999987  7899999999998874   1      


Q ss_pred             ---hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          269 ---DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       269 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                         .++++.|.+++++++..++..|..+|.++-....
T Consensus       690 ~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e  726 (2102)
T PLN03200        690 YAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE  726 (2102)
T ss_pred             HHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence               2468999999999999999999999998866543

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=99.53  E-value=6.8e-13  Score=108.30  Aligned_cols=218  Identities=19%  Similarity=0.286  Sum_probs=173.9

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCC--CHHHHHHHHHHHhccCCCCcHHHHHHhhhc
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDS--SNLLAHEAAFALGQMQDAEAIPALEAVLND   91 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~   91 (318)
                      .+.+++.+.+...++..  .-....+..|+.++..++++.|...+.|.  .|.||..|..+||.++.+...+.+.++.+ 
T Consensus        34 ~~~~i~~i~ka~~d~s~--llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~~~~~~~l~k~~~-  110 (289)
T KOG0567|consen   34 GPAAIKAITKAFIDDSA--LLKHELAYVLGQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPESLEILTKYIK-  110 (289)
T ss_pred             ChHHHHHHHHhcccchh--hhccchhhhhhhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhcchhhHHHHHHHhc-
Confidence            55678888888887764  66778999999999999999999999654  68999999999999999889999999997 


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCC-----------------------cHHHHHhhhccCC-CHHHHHHHHHHHHHHHhhhcc
Q 021051           92 FSLHPIVRHEAAEALGAIGLES-----------------------NIPLLKNSLVSDP-AQEVRETCELALERIEKLKAS  147 (318)
Q Consensus        92 ~~~~~~vR~~a~~~L~~~~~~~-----------------------~~~~L~~~l~~d~-~~~vr~~a~~aL~~~~~~~~~  147 (318)
                       ++-..||..+..++.++...+                       .+..|...+.... .-.-|..+..+|.+++     
T Consensus       111 -dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g-----  184 (289)
T KOG0567|consen  111 -DPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG-----  184 (289)
T ss_pred             -CCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC-----
Confidence             899999998888887654211                       1223333222111 1233445555555554     


Q ss_pred             CccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCC--CCHHHHHH
Q 021051          148 GSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGA--TSALLKHE  225 (318)
Q Consensus       148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d--~~~~vr~~  225 (318)
                                             .++++..+.+.+.++..-+  |..+...+|++..+.+++.+++.|.+  ..+-||.+
T Consensus       185 -----------------------~EeaI~al~~~l~~~Salf--rhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhE  239 (289)
T KOG0567|consen  185 -----------------------TEEAINALIDGLADDSALF--RHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHE  239 (289)
T ss_pred             -----------------------cHHHHHHHHHhcccchHHH--HHHHHHHHhhccchhhhHHHHHHHHhhhcchHHHHH
Confidence                                   3567889999998885554  99999999999999999999998865  47899999


Q ss_pred             HHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          226 VAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       226 a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                      |+.+||.++++++++.|.+.+.|+  .+.||....-+|....
T Consensus       240 aAeALGaIa~e~~~~vL~e~~~D~--~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  240 AAEALGAIADEDCVEVLKEYLGDE--ERVVRESCEVALDMLE  279 (289)
T ss_pred             HHHHHHhhcCHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHH
Confidence            999999999999999999999987  8899998888876643

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.50  E-value=1.4e-12  Score=110.03  Aligned_cols=261  Identities=16%  Similarity=0.182  Sum_probs=193.1

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC---
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA---   79 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---   79 (318)
                      +...++.+++++.+..+ ....+.|.++|.++.+           ..++|.++++|.+.+..||..++|+||.+..+   
T Consensus       112 daGvVpRfvefm~~~q~-~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~  190 (526)
T COG5064         112 DAGVVPRFVEFMDEIQR-DMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG  190 (526)
T ss_pred             hccccHHHHHHHHhcch-hHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence            34567888888865543 2688999999998865           46899999999999999999999999998642   


Q ss_pred             --------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----C------CcHHHHHhhhccCCCHHHHHHHHHHHHH
Q 021051           80 --------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----E------SNIPLLKNSLVSDPAQEVRETCELALER  140 (318)
Q Consensus        80 --------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----~------~~~~~L~~~l~~d~~~~vr~~a~~aL~~  140 (318)
                              .+.+.++.++..+..+-..-+.+-+.|++++.     |      .++|.|.+ |....|++|.--|.|++..
T Consensus       191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~K-Liys~D~evlvDA~WAiSY  269 (526)
T COG5064         191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAK-LIYSRDPEVLVDACWAISY  269 (526)
T ss_pred             HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHH-HHhhcCHHHHHHHHHHHHH
Confidence                    56788888888333444666788888887752     2      36899999 7788999999999999997


Q ss_pred             HHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHH
Q 021051          141 IEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVS  209 (318)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~  209 (318)
                      +.+   +..+....              ..+......|+++|.+++..+  ..-|+..+|++-+           -.+++
T Consensus       270 lsD---g~~E~i~a--------------vld~g~~~RLvElLs~~sa~i--qtPalR~vGNIVTG~D~QTqviI~~G~L~  330 (526)
T COG5064         270 LSD---GPNEKIQA--------------VLDVGIPGRLVELLSHESAKI--QTPALRSVGNIVTGSDDQTQVIINCGALK  330 (526)
T ss_pred             hcc---CcHHHHHH--------------HHhcCCcHHHHHHhcCccccc--cCHHHHhhcCeeecCccceehheecccHH
Confidence            761   11110000              001224567999999988775  7888999998832           26778


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC-----C-----
Q 021051          210 AIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA-----D-----  268 (318)
Q Consensus       210 ~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-----~-----  268 (318)
                      .+..+|+++...+|.+|++.+..+..           ...+|.|+.++...  +-.+|++|++|+.+..     .     
T Consensus       331 a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a--e~k~kKEACWAisNatsgg~~~PD~ir  408 (526)
T COG5064         331 AFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA--EYKIKKEACWAISNATSGGLNRPDIIR  408 (526)
T ss_pred             HHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH--HHHHHHHHHHHHHhhhccccCCchHHH
Confidence            88888999988999999999998752           45689999999987  7899999999998853     2     


Q ss_pred             ----hhhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051          269 ----DQSIGLLKEFAKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       269 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~l  297 (318)
                          .+++..|..++.--+..+-..+..++..+
T Consensus       409 yLv~qG~IkpLc~~L~~~dNkiiev~LD~~eni  441 (526)
T COG5064         409 YLVSQGFIKPLCDLLDVVDNKIIEVALDAIENI  441 (526)
T ss_pred             HHHHccchhHHHHHHhccCccchhhhHHHHHHH
Confidence                24566677776643333434445555544

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=2e-12  Score=118.55  Aligned_cols=291  Identities=21%  Similarity=0.250  Sum_probs=204.0

Q ss_pred             chhhccccCChhhHHHHHH----hhcCCCCCHHHHHHHHHHHhccCC---CChHHHHHHhccC----CCHHHHHHHHHHH
Q 021051            5 DKFTNAFKSSPEMEKFLCD----RLVDPTQPISERFRALFSLRNLKG---PGPRDALIRATKD----SSNLLAHEAAFAL   73 (318)
Q Consensus         5 ~~~~~~~~~~~~~~~~L~~----~L~~~~~~~~~r~~A~~~l~~~~~---~~~~~~L~~~l~d----~~~~vr~~a~~aL   73 (318)
                      +.+++.+|...++...+.+    .|.....  |.++.|...||-+..   .++...+..+|..    .+.+..-.|+++|
T Consensus       326 ~~iAN~fMh~GTT~D~FlR~NL~WlskAtN--WaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAl  403 (929)
T KOG2062|consen  326 TLIANAFMHAGTTSDTFLRNNLDWLSKATN--WAKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYAL  403 (929)
T ss_pred             HHHHHHHHhcCCcchHHHHhchhHHhhcch--HhhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhh
Confidence            4466677765555554433    3444443  799999999998743   4568888888844    4567778899999


Q ss_pred             hccCC---CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhc
Q 021051           74 GQMQD---AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKA  146 (318)
Q Consensus        74 ~~~~~---~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~  146 (318)
                      |-++.   ....+.|.+.|++ .+++.||++++-.||-.+    +.+..+.+...+ ..++...-.+|..++|-++  ..
T Consensus       404 GLIhA~hG~~~~~yL~~~Lk~-~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevL-y~D~AvsGEAAgi~MGl~m--lG  479 (929)
T KOG2062|consen  404 GLIHANHGRGITDYLLQQLKT-AENEVVRHGACLGLGLAGMGSANEEIYEKLKEVL-YNDSAVSGEAAGIAMGLLM--LG  479 (929)
T ss_pred             hccccCcCccHHHHHHHHHHh-ccchhhhhhhhhhccchhcccccHHHHHHHHHHH-hccchhhhhHHHHhhhhHh--hC
Confidence            98763   3578999999994 678999999999887543    455778888844 4445566677888888776  11


Q ss_pred             cCcc--ccccccC---CCCcccCCCC-------CCCCC-ccHHHHHHHHcCCCcChHHHHHHHHHHHh--C--CChhHHH
Q 021051          147 SGSD--GSSMTER---SPFMSVDPAA-------PASSC-SSVDMLREVLLGEEKGMYERYAALFALRN--H--GGDEAVS  209 (318)
Q Consensus       147 ~~~~--~~~~l~~---~~~~~~~~~~-------~~~~~-~~~~~L~~~l~~~~~~~~~r~~a~~~L~~--~--~~~~~~~  209 (318)
                      +...  +.+++..   .......-+.       .++.+ .+-+.+.+++.++++-  .|+..+.+++-  .  |+..++.
T Consensus       480 t~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpi--lR~~Gm~t~alAy~GTgnnkair  557 (929)
T KOG2062|consen  480 TANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPI--LRYGGMYTLALAYVGTGNNKAIR  557 (929)
T ss_pred             cCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchh--hhhhhHHHHHHHHhccCchhhHH
Confidence            1111  1112210   0000000000       11223 3444555555666554  48877766643  2  4567888


Q ss_pred             HHHHH-hCCCCHHHHHHHHHHHhcc--CCcchHHHHHHHHhccCCCHHHHHHHHHHHhcc----CChhhHHHHHHhhcCC
Q 021051          210 AIIDS-LGATSALLKHEVAYVLGQL--QNKAASAALSDVLRNVNEHPMVRHEAAEALGSI----ADDQSIGLLKEFAKDP  282 (318)
Q Consensus       210 ~l~~~-l~d~~~~vr~~a~~~L~~~--~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~~~  282 (318)
                      .|++. .+|.+..||++|+.+||.+  ++++..+..+++|.+. -||.||+.++-+||-.    |..+++..|..+..|+
T Consensus       558 ~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~  636 (929)
T KOG2062|consen  558 RLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDP  636 (929)
T ss_pred             HhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcCh
Confidence            88775 6899999999999999985  6889999999999864 3899999999999875    5788999999999999


Q ss_pred             CHHHHHHHHHHHHhchhhhcch
Q 021051          283 EPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       283 ~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      ...||+.|+.|++.|..+..++
T Consensus       637 ~~fVRQgAlIa~amIm~Q~t~~  658 (929)
T KOG2062|consen  637 VDFVRQGALIALAMIMIQQTEQ  658 (929)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999998776644

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=99.37  E-value=4.7e-12  Score=89.69  Aligned_cols=86  Identities=33%  Similarity=0.517  Sum_probs=75.0

Q ss_pred             HHHHHHHh-CCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcC-CCHH
Q 021051          208 VSAIIDSL-GATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKD-PEPI  285 (318)
Q Consensus       208 ~~~l~~~l-~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~-~~~~  285 (318)
                      ++.|.+.+ +++++.+|..++.+||+++++++++.|.++++++  ++.||..|+++|+.+|++++++.|.+++.+ ++..
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~   78 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGDPEAIPALIELLKDE--DPMVRRAAARALGRIGDPEAIPALIKLLQDDDDEV   78 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-SSHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCcHH
Confidence            46677777 8899999999999999999999999999999876  899999999999999999999999998766 5677


Q ss_pred             HHHHHHHHHH
Q 021051          286 VSQSCEVALS  295 (318)
Q Consensus       286 vr~~a~~aL~  295 (318)
                      ||..|..+|+
T Consensus        79 vr~~a~~aL~   88 (88)
T PF13646_consen   79 VREAAAEALG   88 (88)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhcC
Confidence            7999998885

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=99.33  E-value=4.1e-12  Score=90.00  Aligned_cols=86  Identities=43%  Similarity=0.543  Sum_probs=52.0

Q ss_pred             HHHHHhc-cCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHH
Q 021051           52 DALIRAT-KDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEV  130 (318)
Q Consensus        52 ~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~v  130 (318)
                      +.|++.+ +++++.+|..++++||+++...+++.|.+++.  |+++.||..|+.+|+.+|+++.++.|.+.+.++++..|
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~v   79 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGELGDPEAIPALIELLK--DEDPMVRRAAARALGRIGDPEAIPALIKLLQDDDDEVV   79 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHHHHHHHT--SSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-SSHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCcHHH
Confidence            4555555 56666666666666666665566666666665  56666666666666666666666666664444455555


Q ss_pred             HHHHHHHHH
Q 021051          131 RETCELALE  139 (318)
Q Consensus       131 r~~a~~aL~  139 (318)
                      |..++.+|+
T Consensus        80 r~~a~~aL~   88 (88)
T PF13646_consen   80 REAAAEALG   88 (88)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhhcC
Confidence            666666553

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=5.9e-10  Score=95.25  Aligned_cols=258  Identities=18%  Similarity=0.169  Sum_probs=191.0

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC--------
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD--------   78 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------   78 (318)
                      .++.++++-++++.  .+|..+..+|-.+-+          ...++.|..+++..++.+|..+..+++.++.        
T Consensus       168 aL~pltrLakskdi--rvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L  245 (550)
T KOG4224|consen  168 ALEPLTRLAKSKDI--RVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL  245 (550)
T ss_pred             chhhhHhhcccchh--hHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence            56677776666664  888888888766533          4678899999999999999999999988763        


Q ss_pred             ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 021051           79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----------LESNIPLLKNSLVSDPAQEVRETCELALERIEKL  144 (318)
Q Consensus        79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~  144 (318)
                          +..++.|+.+..  +.++.++-.|..+|+.+.          ....+|.+.+ ++.++.-..-.+.+.++.++.  
T Consensus       246 aqaep~lv~~Lv~Lmd--~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~-Llqs~~~plilasVaCIrnis--  320 (550)
T KOG4224|consen  246 AQAEPKLVPALVDLMD--DGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVE-LLQSPMGPLILASVACIRNIS--  320 (550)
T ss_pred             HhcccchHHHHHHHHh--CCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHH-HHhCcchhHHHHHHHHHhhcc--
Confidence                357889999998  888989888888888775          2457888999 557776666677777777665  


Q ss_pred             hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHHHH
Q 021051          145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAIID  213 (318)
Q Consensus       145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~~  213 (318)
                                     +...+. ..+.+...+..|+.+|.-.+.+. .+..|+..|.++..           ..+++.+++
T Consensus       321 ---------------ihplNe-~lI~dagfl~pLVrlL~~~dnEe-iqchAvstLrnLAasse~n~~~i~esgAi~kl~e  383 (550)
T KOG4224|consen  321 ---------------IHPLNE-VLIADAGFLRPLVRLLRAGDNEE-IQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIE  383 (550)
T ss_pred             ---------------cccCcc-cceecccchhHHHHHHhcCCchh-hhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHH
Confidence                           110110 11123456788999997655541 38888888887743           378899999


Q ss_pred             HhCCCCHHHHHHHHHHHhccC----------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh--------------
Q 021051          214 SLGATSALLKHEVAYVLGQLQ----------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIADD--------------  269 (318)
Q Consensus       214 ~l~d~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~--------------  269 (318)
                      ++-|....++.+.-.++..+.          +...+|.|+....+.  +.+||-.|+.+|+++...              
T Consensus       384 L~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~--s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P  461 (550)
T KOG4224|consen  384 LLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSE--SEEVRGNAAAALINLSSDVEHYARVIEAWDHP  461 (550)
T ss_pred             HHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCcc--chhhcccHHHHHHhhhhhhHHHHHHHHHhcCc
Confidence            999988888876655555432          245678889888876  899999999999998732              


Q ss_pred             --hhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          270 --QSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       270 --~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                        .....|..++.+.+..++..+.|.+.++-..
T Consensus       462 ~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~  494 (550)
T KOG4224|consen  462 VQGIQGRLARFLASHELTFRHIARWTIQQLLED  494 (550)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence              2456678888888888999999998877544

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=9.4e-10  Score=94.03  Aligned_cols=227  Identities=21%  Similarity=0.215  Sum_probs=168.8

Q ss_pred             ChHHHHHHhccCCCHHHHHHHHHHHhccC----------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------
Q 021051           49 GPRDALIRATKDSSNLLAHEAAFALGQMQ----------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG--------  110 (318)
Q Consensus        49 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--------  110 (318)
                      .+...|.++-+..+-.+|+.+..+|..+.          ....+|.|+.+++  ..|+.+|..+..+++.++        
T Consensus       167 GaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~--s~d~dvqyycttaisnIaVd~~~Rk~  244 (550)
T KOG4224|consen  167 GALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK--SGDLDVQYYCTTAISNIAVDRRARKI  244 (550)
T ss_pred             cchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc--cCChhHHHHHHHHhhhhhhhHHHHHH
Confidence            45666777667778888888888886654          3467999999999  899999999999999887        


Q ss_pred             ----CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCC
Q 021051          111 ----LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEE  186 (318)
Q Consensus       111 ----~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  186 (318)
                          .|+.++.|.. +..++++.|+..|..+|+.+......-                  .+......+|.++++++++.
T Consensus       245 Laqaep~lv~~Lv~-Lmd~~s~kvkcqA~lALrnlasdt~Yq------------------~eiv~ag~lP~lv~Llqs~~  305 (550)
T KOG4224|consen  245 LAQAEPKLVPALVD-LMDDGSDKVKCQAGLALRNLASDTEYQ------------------REIVEAGSLPLLVELLQSPM  305 (550)
T ss_pred             HHhcccchHHHHHH-HHhCCChHHHHHHHHHHhhhcccchhh------------------hHHHhcCCchHHHHHHhCcc
Confidence                3568999999 778999999999999999887110000                  00112347899999998887


Q ss_pred             cChHHHHHHHHHHHhCC----------ChhHHHHHHHHhCCC-CHHHHHHHHHHHhccC-----------CcchHHHHHH
Q 021051          187 KGMYERYAALFALRNHG----------GDEAVSAIIDSLGAT-SALLKHEVAYVLGQLQ-----------NKAASAALSD  244 (318)
Q Consensus       187 ~~~~~r~~a~~~L~~~~----------~~~~~~~l~~~l~d~-~~~vr~~a~~~L~~~~-----------~~~~~~~L~~  244 (318)
                      .+.  -.+.+.++.++.          +...+..|..+|.-. +.+++-.|+..|+.+.           ...++|.+..
T Consensus       306 ~pl--ilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~e  383 (550)
T KOG4224|consen  306 GPL--ILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIE  383 (550)
T ss_pred             hhH--HHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHH
Confidence            775  566677776663          235667788888644 4568888888888764           2568999999


Q ss_pred             HHhccCCCHHHHH--HHHHHHhccCC--------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          245 VLRNVNEHPMVRH--EAAEALGSIAD--------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       245 ~l~~~~~~~~vr~--~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      ++.|.  ...+|.  .++.+...+.+        .+.++.|+....+...+||--+..||.++...
T Consensus       384 L~lD~--pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  384 LLLDG--PVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD  447 (550)
T ss_pred             HHhcC--ChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence            99987  455554  44444444432        34688888888999999999999999887544

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.21  E-value=6.2e-10  Score=105.24  Aligned_cols=256  Identities=21%  Similarity=0.240  Sum_probs=175.0

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChH----HHHHHhccCCCHHHHHHHHHHHhccCC------CC-cHHHH
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPR----DALIRATKDSSNLLAHEAAFALGQMQD------AE-AIPAL   85 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~----~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~-~~~~L   85 (318)
                      .+..+.+-|.++++  .+|..|+++++.+..++..    +.+.+.+.|+++.||..|+.++.++-.      .. .++.+
T Consensus        80 ~~n~l~kdl~~~n~--~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l  157 (526)
T PF01602_consen   80 IINSLQKDLNSPNP--YIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKL  157 (526)
T ss_dssp             HHHHHHHHHCSSSH--HHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHH
T ss_pred             HHHHHHHhhcCCCH--HHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            55566777888876  8899999999888886544    445566688889999988888876531      12 47778


Q ss_pred             HHhhhcCCCCHHHHHHHHHHHHhc-CCC----CcHHHHHhhhc---cCCCHHHHHHHHHHHHHHHhhhccCccccccccC
Q 021051           86 EAVLNDFSLHPIVRHEAAEALGAI-GLE----SNIPLLKNSLV---SDPAQEVRETCELALERIEKLKASGSDGSSMTER  157 (318)
Q Consensus        86 ~~~l~~~~~~~~vR~~a~~~L~~~-~~~----~~~~~L~~~l~---~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~  157 (318)
                      ..++.  |+++.|+..|+.++..+ ..+    ..++.+...+.   .+++|.++..++..+..+..   ....       
T Consensus       158 ~~lL~--d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~---~~~~-------  225 (526)
T PF01602_consen  158 KQLLS--DKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP---MEPE-------  225 (526)
T ss_dssp             HHHTT--HSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS---SSHH-------
T ss_pred             hhhcc--CCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc---CChh-------
Confidence            88887  78888998898888887 332    23344333232   67888888888888876651   0000       


Q ss_pred             CCCcccCCCCCCCC--CccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----hHHHHHHHHhCCCCHHHHHHHHHHH
Q 021051          158 SPFMSVDPAAPASS--CSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----EAVSAIIDSLGATSALLKHEVAYVL  230 (318)
Q Consensus       158 ~~~~~~~~~~~~~~--~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----~~~~~l~~~l~d~~~~vr~~a~~~L  230 (318)
                                  ..  ...++.+...+.+.++.  +...++.++..+...     .+++.+..++.++++.+|..++..|
T Consensus       226 ------------~~~~~~~i~~l~~~l~s~~~~--V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L  291 (526)
T PF01602_consen  226 ------------DADKNRIIEPLLNLLQSSSPS--VVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSL  291 (526)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             ------------hhhHHHHHHHHHHHhhccccH--HHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHH
Confidence                        00  12466777777765555  488888888876543     3567788888888999999999998


Q ss_pred             hccCCcc-----hHHHHHHHHh-ccCCCHHHHHHHHHHHhccCChh----hHHHHHHhhcC-CCHHHHHHHHHHHHhchh
Q 021051          231 GQLQNKA-----ASAALSDVLR-NVNEHPMVRHEAAEALGSIADDQ----SIGLLKEFAKD-PEPIVSQSCEVALSMLEY  299 (318)
Q Consensus       231 ~~~~~~~-----~~~~L~~~l~-~~~~~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~~-~~~~vr~~a~~aL~~l~~  299 (318)
                      ..+....     ........+. +.  +..+|..+++.|..+.++.    .++.|.+.+.+ .++.++..++.++..+..
T Consensus       292 ~~l~~~~~~~v~~~~~~~~~l~~~~--d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~  369 (526)
T PF01602_consen  292 SQLAQSNPPAVFNQSLILFFLLYDD--DPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAE  369 (526)
T ss_dssp             HHHCCHCHHHHGTHHHHHHHHHCSS--SHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred             HHhhcccchhhhhhhhhhheecCCC--ChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence            8876533     2233444555 44  7899999999999998754    45556666643 477899999999888765


Q ss_pred             hhc
Q 021051          300 EQL  302 (318)
Q Consensus       300 ~~~  302 (318)
                      .-.
T Consensus       370 ~~~  372 (526)
T PF01602_consen  370 KFP  372 (526)
T ss_dssp             HHG
T ss_pred             ccC
Confidence            544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.14  E-value=6.4e-09  Score=98.35  Aligned_cols=253  Identities=21%  Similarity=0.190  Sum_probs=183.2

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC--C----hHHHHHHhccCCCHHHHHHHHHHHhccCCCCc----HHHHH
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGP--G----PRDALIRATKDSSNLLAHEAAFALGQMQDAEA----IPALE   86 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~--~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~L~   86 (318)
                      ....+++++.+++.  ..|..+.-.+..+...  +    ++..+.+-+.++++.+|..|+++++.++.+..    .+.+.
T Consensus        43 ~~~~vi~l~~s~~~--~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~  120 (526)
T PF01602_consen   43 LFMEVIKLISSKDL--ELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVI  120 (526)
T ss_dssp             THHHHHCTCSSSSH--HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCH--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHH
Confidence            45566777776664  7888777777776653  3    56667777789999999999999999997654    45567


Q ss_pred             HhhhcCCCCHHHHHHHHHHHHhcC--CC----C-cHHHHHhhhccCCCHHHHHHHHHHHHHH-HhhhccCccccccccCC
Q 021051           87 AVLNDFSLHPIVRHEAAEALGAIG--LE----S-NIPLLKNSLVSDPAQEVRETCELALERI-EKLKASGSDGSSMTERS  158 (318)
Q Consensus        87 ~~l~~~~~~~~vR~~a~~~L~~~~--~~----~-~~~~L~~~l~~d~~~~vr~~a~~aL~~~-~~~~~~~~~~~~~l~~~  158 (318)
                      +++.  +++|.||+.|+.++.++-  ++    . ..+.+.+ +..|+++.|+.+|..++..+ .. .+..          
T Consensus       121 ~ll~--~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~-~~~~----------  186 (526)
T PF01602_consen  121 KLLS--DPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQ-LLSDKDPSVVSAALSLLSEIKCN-DDSY----------  186 (526)
T ss_dssp             HHHH--SSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHH-HTTHSSHHHHHHHHHHHHHHHCT-HHHH----------
T ss_pred             HHhc--CCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh-hccCCcchhHHHHHHHHHHHccC-cchh----------
Confidence            7777  899999999999998763  22    2 4777888 56899999999999999877 20 0000          


Q ss_pred             CCcccCCCCCCCCCccHHHHHHH----HcCCCcChHHHHHHHHHHHhCCC--------hhHHHHHHHHhCCCCHHHHHHH
Q 021051          159 PFMSVDPAAPASSCSSVDMLREV----LLGEEKGMYERYAALFALRNHGG--------DEAVSAIIDSLGATSALLKHEV  226 (318)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~L~~~----l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a  226 (318)
                                   ...++.++..    +...++  +.+..++..+..+..        ...++.+...+.+.++.|..++
T Consensus       187 -------------~~~~~~~~~~L~~~l~~~~~--~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~  251 (526)
T PF01602_consen  187 -------------KSLIPKLIRILCQLLSDPDP--WLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEA  251 (526)
T ss_dssp             -------------TTHHHHHHHHHHHHHTCCSH--HHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------hhhHHHHHHHhhhcccccch--HHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHH
Confidence                         0134444444    334433  468899999998865        2356677777788899999999


Q ss_pred             HHHHhccCCcc-----hHHHHHHHHhccCCCHHHHHHHHHHHhccCChh-----hHHHHHHhhc-CCCHHHHHHHHHHHH
Q 021051          227 AYVLGQLQNKA-----ASAALSDVLRNVNEHPMVRHEAAEALGSIADDQ-----SIGLLKEFAK-DPEPIVSQSCEVALS  295 (318)
Q Consensus       227 ~~~L~~~~~~~-----~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~-----~~~~L~~~l~-~~~~~vr~~a~~aL~  295 (318)
                      +.++..+.+..     +++.|..++.+.  ++++|+.++..|..+....     ........+. +++..+|..+...|.
T Consensus       252 ~~~i~~l~~~~~~~~~~~~~L~~lL~s~--~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~  329 (526)
T PF01602_consen  252 IRLIIKLSPSPELLQKAINPLIKLLSSS--DPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLY  329 (526)
T ss_dssp             HHHHHHHSSSHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHhhcc--cchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHh
Confidence            99999877643     578899999876  8999999999999986433     2222333444 889999999999998


Q ss_pred             hchhhhc
Q 021051          296 MLEYEQL  302 (318)
Q Consensus       296 ~l~~~~~  302 (318)
                      .+...+.
T Consensus       330 ~l~~~~n  336 (526)
T PF01602_consen  330 KLANESN  336 (526)
T ss_dssp             HH--HHH
T ss_pred             hcccccc
Confidence            8876554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=1.6e-09  Score=98.95  Aligned_cols=288  Identities=18%  Similarity=0.133  Sum_probs=166.6

Q ss_pred             CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC---------------CChHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051           13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG---------------PGPRDALIRATKDSSNLLAHEAAFALGQMQ   77 (318)
Q Consensus        13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~   77 (318)
                      .=++.++.|.++|.+++-  ....-|..+|.++..               .-.++.+.+++++++|.+|..|+.++.++-
T Consensus       125 ~wpelLp~L~~~L~s~d~--n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i  202 (885)
T KOG2023|consen  125 HWPELLPQLCELLDSPDY--NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI  202 (885)
T ss_pred             cchhHHHHHHHHhcCCcc--cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence            346777888888887764  344445555555433               124566666667888888888877776543


Q ss_pred             C----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHHHHhhhccCCCHHHHHHHHHH
Q 021051           78 D----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPLLKNSLVSDPAQEVRETCELA  137 (318)
Q Consensus        78 ~----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~~d~~~~vr~~a~~a  137 (318)
                      -          +..+..+..+..  |+++.||...++++..+-+          ...++.+.. ..+|.|..|-..|.+-
T Consensus       203 ~~~~qal~~~iD~Fle~lFalan--D~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~-~tqd~dE~VALEACEF  279 (885)
T KOG2023|consen  203 IIQTQALYVHIDKFLEILFALAN--DEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQ-RTQDVDENVALEACEF  279 (885)
T ss_pred             ecCcHHHHHHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHH-HccCcchhHHHHHHHH
Confidence            1          123334444443  7788888887777765421          123444444 4567777777766666


Q ss_pred             HHHHHhhhccCcc--------ccccccCC-CCcccCC----------CCCCCCCccHHHHHHHH---------c---C--
Q 021051          138 LERIEKLKASGSD--------GSSMTERS-PFMSVDP----------AAPASSCSSVDMLREVL---------L---G--  184 (318)
Q Consensus       138 L~~~~~~~~~~~~--------~~~~l~~~-~~~~~~~----------~~~~~~~~~~~~L~~~l---------~---~--  184 (318)
                      .-.+++ .+-.+.        +...+-.. .|...+.          ..+..++..-|...+.-         .   +  
T Consensus       280 wla~ae-qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddD  358 (885)
T KOG2023|consen  280 WLALAE-QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDD  358 (885)
T ss_pred             HHHHhc-CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccc
Confidence            555541 000000        00000000 0000000          00000000001000000         0   0  


Q ss_pred             --------CCcChHHHHH---HHHHHHhCCChhH----HHHHHHHhCCCCHHHHHHHHHHHhccCC----------cchH
Q 021051          185 --------EEKGMYERYA---ALFALRNHGGDEA----VSAIIDSLGATSALLKHEVAYVLGQLQN----------KAAS  239 (318)
Q Consensus       185 --------~~~~~~~r~~---a~~~L~~~~~~~~----~~~l~~~l~d~~~~vr~~a~~~L~~~~~----------~~~~  239 (318)
                              .++..  |..   ++..|.++=.++.    +|.|.+.|.+..|.+|..++-+||.+..          ++.+
T Consensus       359 e~DDdD~~~dWNL--RkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLi  436 (885)
T KOG2023|consen  359 EDDDDDAFSDWNL--RKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELI  436 (885)
T ss_pred             ccccccccccccH--hhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHH
Confidence                    01233  554   3455555544444    4555666778899999999999998753          5788


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHhccCC--------h---hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhc
Q 021051          240 AALSDVLRNVNEHPMVRHEAAEALGSIAD--------D---QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY  308 (318)
Q Consensus       240 ~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--------~---~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~  308 (318)
                      |.|+..+.|.  .|.||.-.++.|++++.        .   ..+..|.+.+-|.+..|..+|+.|+..+......+...|
T Consensus       437 p~l~~~L~DK--kplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~  514 (885)
T KOG2023|consen  437 PFLLSLLDDK--KPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPY  514 (885)
T ss_pred             HHHHHHhccC--ccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHH
Confidence            9999999988  89999999999999973        1   123334444557899999999999999988877665555


Q ss_pred             cc
Q 021051          309 LF  310 (318)
Q Consensus       309 ~~  310 (318)
                      ..
T Consensus       515 l~  516 (885)
T KOG2023|consen  515 LE  516 (885)
T ss_pred             HH
Confidence            43

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=5.2e-08  Score=94.48  Aligned_cols=284  Identities=19%  Similarity=0.174  Sum_probs=165.8

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-----C-
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD-----A-   79 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----~-   79 (318)
                      +.++.|....+++++  ..|..|+..|..+..          .+....+.+.+.|++..||..|+++++.+..     + 
T Consensus       118 ell~~L~q~~~S~~~--~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~  195 (1075)
T KOG2171|consen  118 ELLQFLFQSTKSPNP--SLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS  195 (1075)
T ss_pred             HHHHHHHHHhcCCCc--chhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH
Confidence            456667777777877  778888888766532          1334444455567665588888888775431     0 


Q ss_pred             ------CcHHHHHHhhhc--CCCCHHHHHHHHHHHHhcCC--CC--------cHHHHHhhh-ccCCCHHHHHHHHHHHHH
Q 021051           80 ------EAIPALEAVLND--FSLHPIVRHEAAEALGAIGL--ES--------NIPLLKNSL-VSDPAQEVRETCELALER  140 (318)
Q Consensus        80 ------~~~~~L~~~l~~--~~~~~~vR~~a~~~L~~~~~--~~--------~~~~L~~~l-~~d~~~~vr~~a~~aL~~  140 (318)
                            ..+|.++..+..  ++.|...-..++.+|..+-.  +.        .+..-.+.. .++-++.+|..|+..+.-
T Consensus       196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs  275 (1075)
T KOG2171|consen  196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVS  275 (1075)
T ss_pred             HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence                  123333333331  13333333444554444321  11        222222211 134477888888777765


Q ss_pred             HHhhhcc------C--cccc--------ccccC-----------CCCccc---------CCCCCCCCCccH----HHHHH
Q 021051          141 IEKLKAS------G--SDGS--------SMTER-----------SPFMSV---------DPAAPASSCSSV----DMLRE  180 (318)
Q Consensus       141 ~~~~~~~------~--~~~~--------~~l~~-----------~~~~~~---------~~~~~~~~~~~~----~~L~~  180 (318)
                      +.+....      .  ..+.        +...+           ....+.         ..+..++++..+    +.+-.
T Consensus       276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~  355 (1075)
T KOG2171|consen  276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEA  355 (1075)
T ss_pred             HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHH
Confidence            5421000      0  0000        00000           000000         001112334444    45566


Q ss_pred             HHcCCCcChHHHHHHHHHHHhCCC----------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchH
Q 021051          181 VLLGEEKGMYERYAALFALRNHGG----------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAAS  239 (318)
Q Consensus       181 ~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~  239 (318)
                      ++.+.++..  |.+++.+++.++.          +..++.+++.++|++|.||.+|+.++|++..           ....
T Consensus       356 ~l~S~~w~~--R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~  433 (1075)
T KOG2171|consen  356 MLQSTEWKE--RHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP  433 (1075)
T ss_pred             HhcCCCHHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence            677888876  9999999998854          3677788889999999999999999999874           2344


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHhccCC---h-h---hHHHHH-----HhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          240 AALSDVLRNVNEHPMVRHEAAEALGSIAD---D-Q---SIGLLK-----EFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       240 ~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---~-~---~~~~L~-----~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      +.|+..+.+. +++.|...|+-++-++..   . .   .++.|.     -+.+++.+.|+..+..||+.+..-.-.+
T Consensus       434 ~aL~~~ld~~-~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~  509 (1075)
T KOG2171|consen  434 PALIALLDST-QNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK  509 (1075)
T ss_pred             HHHHHHhccc-CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence            5677777664 588999999999987642   1 1   122222     2455688999999999999987664444

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=5.4e-09  Score=95.59  Aligned_cols=258  Identities=17%  Similarity=0.123  Sum_probs=166.7

Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHhccCC-------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC-------------
Q 021051           20 FLCDRLVDPTQPISERFRALFSLRNLKG-------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA-------------   79 (318)
Q Consensus        20 ~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------------   79 (318)
                      ..+..|.+.++  -+|...=..+.++.+       |+..+.|...|.+++......|+.+|.++..+             
T Consensus        94 ~~l~~lgd~~~--lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rp  171 (885)
T KOG2023|consen   94 ECLHGLGDASP--LIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRP  171 (885)
T ss_pred             HHHhhccCchH--HHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCc
Confidence            45566777776  677765555554433       78999999999999988999999999887632             


Q ss_pred             --CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--C--------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc
Q 021051           80 --EAIPALEAVLNDFSLHPIVRHEAAEALGAIG--L--------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKAS  147 (318)
Q Consensus        80 --~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--~--------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~  147 (318)
                        -.+|.++++.+  +++|.+|..|+..+..+=  .        ...++.+.. +.+|++|.||+....++..+-+ .+.
T Consensus       172 l~~mipkfl~f~~--h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFa-lanD~~~eVRk~vC~alv~Lle-vr~  247 (885)
T KOG2023|consen  172 LNIMIPKFLQFFK--HPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFA-LANDEDPEVRKNVCRALVFLLE-VRP  247 (885)
T ss_pred             hHHhHHHHHHHHh--CCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHH-hcH
Confidence              24788999999  999999999999888653  1        124566666 6799999999999999987651 000


Q ss_pred             CccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC------------hhHHHHHHHHh
Q 021051          148 GSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG------------DEAVSAIIDSL  215 (318)
Q Consensus       148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~------------~~~~~~l~~~l  215 (318)
                       +.+..-+                ...+..++..-++.+..+  ...|.+-...+..            ++.+|.|.+.+
T Consensus       248 -dkl~phl----------------~~IveyML~~tqd~dE~V--ALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M  308 (885)
T KOG2023|consen  248 -DKLVPHL----------------DNIVEYMLQRTQDVDENV--ALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGM  308 (885)
T ss_pred             -Hhcccch----------------HHHHHHHHHHccCcchhH--HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence             0000000                112222222223333332  2222222111111            01111111100


Q ss_pred             ----------C------------------------------------C----------CCHHHHHHHHHHHh---ccCCc
Q 021051          216 ----------G------------------------------------A----------TSALLKHEVAYVLG---QLQNK  236 (318)
Q Consensus       216 ----------~------------------------------------d----------~~~~vr~~a~~~L~---~~~~~  236 (318)
                                +                                    +          .+|.+|...+.+|+   .+-..
T Consensus       309 ~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~  388 (885)
T KOG2023|consen  309 VYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD  388 (885)
T ss_pred             ccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH
Confidence                      0                                    0          13788865555554   44445


Q ss_pred             chHHHHHHH----HhccCCCHHHHHHHHHHHhccCC----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          237 AASAALSDV----LRNVNEHPMVRHEAAEALGSIAD----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       237 ~~~~~L~~~----l~~~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      +.++.+..+    +.+.  .|.+|-+++.+||.|..          ++.+|+|..++.|.-+-||...+|.|+++..+-.
T Consensus       389 elL~~l~PlLk~~L~~~--~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~  466 (885)
T KOG2023|consen  389 ELLPILLPLLKEHLSSE--EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVV  466 (885)
T ss_pred             HHHHHHHHHHHHHcCcc--hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHh
Confidence            555555544    4444  89999999999999962          5689999999999999999999999999988766


Q ss_pred             ch
Q 021051          303 EK  304 (318)
Q Consensus       303 ~~  304 (318)
                      .+
T Consensus       467 ~~  468 (885)
T KOG2023|consen  467 QD  468 (885)
T ss_pred             cC
Confidence            55

>PTZ00429 beta-adaptin; Provisional

Probab=98.96  E-value=1.3e-07  Score=91.26  Aligned_cols=119  Identities=13%  Similarity=0.097  Sum_probs=58.9

Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHhccCC--CC----hHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHH----HHh
Q 021051           19 KFLCDRLVDPTQPISERFRALFSLRNLKG--PG----PRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPAL----EAV   88 (318)
Q Consensus        19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L----~~~   88 (318)
                      ..+++.+.+++.  ..|......+..++.  ++    ++..+.+-++|++|.+|..|+++++.++.+..++.+    .+.
T Consensus        71 ~dVvk~~~S~d~--elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~  148 (746)
T PTZ00429         71 VDVVKLAPSTDL--ELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRA  148 (746)
T ss_pred             HHHHHHhCCCCH--HHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            334444444443  555555555444433  22    244444444555566666666666655554433333    333


Q ss_pred             hhcCCCCHHHHHHHHHHHHhcC--C------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           89 LNDFSLHPIVRHEAAEALGAIG--L------ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        89 l~~~~~~~~vR~~a~~~L~~~~--~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      +.  |++|.||+.|+.++.++-  +      .+.++.|.+ ++.|+++.|..+|+.+|..+.
T Consensus       149 L~--D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~-LL~D~dp~Vv~nAl~aL~eI~  207 (746)
T PTZ00429        149 VA--DPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVE-LLNDNNPVVASNAAAIVCEVN  207 (746)
T ss_pred             hc--CCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHH-HhcCCCccHHHHHHHHHHHHH
Confidence            33  555666665555555532  1      123455555 445556666555555555543

>PTZ00429 beta-adaptin; Provisional

Probab=98.96  E-value=4.6e-07  Score=87.45  Aligned_cols=255  Identities=14%  Similarity=0.069  Sum_probs=177.5

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHH-hcc--CC--CChHHHHHHhccCCCHHHHHHHHHHHhccCCC------CcHHHH
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSL-RNL--KG--PGPRDALIRATKDSSNLLAHEAAFALGQMQDA------EAIPAL   85 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l-~~~--~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L   85 (318)
                      -..+|.+.|.+.+.  ..|..+++-+ ..+  |.  ......+++.+.+.+..+|...-..+..++..      .++..|
T Consensus        33 e~~ELr~~L~s~~~--~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl  110 (746)
T PTZ00429         33 EGAELQNDLNGTDS--YRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTF  110 (746)
T ss_pred             hHHHHHHHHHCCCH--HHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHH
Confidence            45778888888775  6777777644 222  32  34566677788888988888877666655532      235666


Q ss_pred             HHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHH----HHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCc
Q 021051           86 EAVLNDFSLHPIVRHEAAEALGAIGLESNIPL----LKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFM  161 (318)
Q Consensus        86 ~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~----L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~  161 (318)
                      .+-+.  +++|.+|..|++.|+.+..+..++.    +.+ ...|++|.||+.|+.++.++-  ......           
T Consensus       111 ~KDl~--d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk-~L~D~~pYVRKtAalai~Kly--~~~pel-----------  174 (746)
T PTZ00429        111 LQDTT--NSSPVVRALAVRTMMCIRVSSVLEYTLEPLRR-AVADPDPYVRKTAAMGLGKLF--HDDMQL-----------  174 (746)
T ss_pred             HHHcC--CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHH--hhCccc-----------
Confidence            66666  8999999999999999998876554    456 458999999999999999875  111000           


Q ss_pred             ccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC---------hhHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 021051          162 SVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG---------DEAVSAIIDSLGATSALLKHEVAYVLGQ  232 (318)
Q Consensus       162 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~---------~~~~~~l~~~l~d~~~~vr~~a~~~L~~  232 (318)
                             .......+.|.+++.|.++.+  ...|+.+|..+..         ...+..+.+.+.+-+++.+...+..|..
T Consensus       175 -------v~~~~~~~~L~~LL~D~dp~V--v~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~  245 (746)
T PTZ00429        175 -------FYQQDFKKDLVELLNDNNPVV--ASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA  245 (746)
T ss_pred             -------ccccchHHHHHHHhcCCCccH--HHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence                   001235788999898888875  8888888877742         2334445566667788889999999987


Q ss_pred             cCCc------chHHHHHHHHhccCCCHHHHHHHHHHHhccCC---hhhHH--------HHHHhhcCCCHHHHHHHHHHHH
Q 021051          233 LQNK------AASAALSDVLRNVNEHPMVRHEAAEALGSIAD---DQSIG--------LLKEFAKDPEPIVSQSCEVALS  295 (318)
Q Consensus       233 ~~~~------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---~~~~~--------~L~~~l~~~~~~vr~~a~~aL~  295 (318)
                      ..+.      ..+..+...+++.  ++.|..+|++.+..+..   +..++        .|+.+ .+.++.++..+...+.
T Consensus       246 y~P~~~~e~~~il~~l~~~Lq~~--N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~  322 (746)
T PTZ00429        246 QRPSDKESAETLLTRVLPRMSHQ--NPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIH  322 (746)
T ss_pred             cCCCCcHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHH
Confidence            6542      2455566666676  89999999999888763   33222        23333 4566788888888887


Q ss_pred             hchhhh
Q 021051          296 MLEYEQ  301 (318)
Q Consensus       296 ~l~~~~  301 (318)
                      .+....
T Consensus       323 ~i~~~~  328 (746)
T PTZ00429        323 ALLVIF  328 (746)
T ss_pred             HHHHHC
Confidence            665543

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=1.2e-07  Score=91.97  Aligned_cols=123  Identities=21%  Similarity=0.243  Sum_probs=94.4

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhcc-CCCChHHHHHHhcc-CCCHHHHHHHHHHHhccCCC-----------CcH
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNL-KGPGPRDALIRATK-DSSNLLAHEAAFALGQMQDA-----------EAI   82 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~-~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~-----------~~~   82 (318)
                      .....|+..|-+++.  .+|..|-+++.+. +.+...+.|...+. ..++.+|..|+-.+.++-..           ..-
T Consensus         4 ~~l~qLl~~l~spDn--~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~sik   81 (1075)
T KOG2171|consen    4 APLEQLLQQLLSPDN--EVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIK   81 (1075)
T ss_pred             hHHHHHHHHhcCCCc--hHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            346678888888987  8999999999854 55678888998884 67899999888776553311           223


Q ss_pred             HHHHHhhhcCCCCHHHHHHHHHHHHhcC-------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           83 PALEAVLNDFSLHPIVRHEAAEALGAIG-------LESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        83 ~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      ..|+..+. .++.+.||+.....++.+.       .|+.++.|.+ ..+++++..|..+...|..+.
T Consensus        82 s~lL~~~~-~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q-~~~S~~~~~rE~al~il~s~~  146 (1075)
T KOG2171|consen   82 SSLLEIIQ-SETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQ-STKSPNPSLRESALLILSSLP  146 (1075)
T ss_pred             HHHHHHHH-hccchHHHHHHHHHHHHHHHhccccchHHHHHHHHH-HhcCCCcchhHHHHHHHHhhh
Confidence            44555555 3788999999999888764       3567788888 568999999999999998876

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.88  E-value=4.8e-07  Score=84.64  Aligned_cols=261  Identities=19%  Similarity=0.207  Sum_probs=174.2

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccC-----------CCChHHHHHHhccCCCHHHHHHHHHHHhccCCC---
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLK-----------GPGPRDALIRATKDSSNLLAHEAAFALGQMQDA---   79 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---   79 (318)
                      .+...+.|...|.++++  .+|..+++.++...           +.+..+.++..+.+++..|...|+.+|..+...   
T Consensus        75 ~~~~~~~L~~gL~h~~~--~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~  152 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHPSP--KVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG  152 (503)
T ss_pred             HHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh
Confidence            45677788999999998  99999999887752           256788888999999999999999999887532   


Q ss_pred             -------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051           80 -------EAIPALEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALERI  141 (318)
Q Consensus        80 -------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~  141 (318)
                             .....|..++.  .++..+|..+...+..+.           +.+.++.+...+ +++|.-|+.+++..+..+
T Consensus       153 ~~~l~~~~~~~~L~~l~~--~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL-~~dDiLvqlnalell~~L  229 (503)
T PF10508_consen  153 LEQLFDSNLLSKLKSLMS--QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL-DSDDILVQLNALELLSEL  229 (503)
T ss_pred             HHHHhCcchHHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHH
Confidence                   22566677777  567888888888887764           245677888844 668999999999999998


Q ss_pred             HhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHH------HHHHhCCC----------h
Q 021051          142 EKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAAL------FALRNHGG----------D  205 (318)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~------~~L~~~~~----------~  205 (318)
                      +...++.    ..+              .....++.|...+.+...+.  |..++      ...+++..          +
T Consensus       230 a~~~~g~----~yL--------------~~~gi~~~L~~~l~~~~~dp--~~~~~~l~g~~~f~g~la~~~~~~v~~~~p  289 (503)
T PF10508_consen  230 AETPHGL----QYL--------------EQQGIFDKLSNLLQDSEEDP--RLSSLLLPGRMKFFGNLARVSPQEVLELYP  289 (503)
T ss_pred             HcChhHH----HHH--------------HhCCHHHHHHHHHhccccCC--cccchhhhhHHHHHHHHHhcChHHHHHHHH
Confidence            8111110    011              12346777777776543332  22222      22232222          2


Q ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHhccCCcc-hH-----------HHHHHHHhc--cCCCHHHHHHHHHHHhcc--CCh
Q 021051          206 EAVSAIIDSLGATSALLKHEVAYVLGQLQNKA-AS-----------AALSDVLRN--VNEHPMVRHEAAEALGSI--ADD  269 (318)
Q Consensus       206 ~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~~-----------~~L~~~l~~--~~~~~~vr~~a~~aL~~~--~~~  269 (318)
                      ..+..+.+.+.+.|+..+..|+.++|.++... ..           ...+..+.+  .+...++|..++.+++.+  ...
T Consensus       290 ~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~  369 (503)
T PF10508_consen  290 AFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT  369 (503)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence            33344555567888989999999999887521 11           111222211  112567899999999887  211


Q ss_pred             --------------------hhHH-HHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051          270 --------------------QSIG-LLKEFAKDPEPIVSQSCEVALSMLEY  299 (318)
Q Consensus       270 --------------------~~~~-~L~~~l~~~~~~vr~~a~~aL~~l~~  299 (318)
                                          .... .+..+++.|.+++|.++...|..+-.
T Consensus       370 ~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  370 DRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA  420 (503)
T ss_pred             CCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence                                1122 67788899999999998887776533

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=4.5e-07  Score=84.77  Aligned_cols=139  Identities=17%  Similarity=0.181  Sum_probs=92.1

Q ss_pred             CccHHHHHHHHcCCCcChHHHHHHHHHHHhC---CChhHHHHHHHHh-CCCC-HHHHHHHHHHHhccCCcc----hHHHH
Q 021051          172 CSSVDMLREVLLGEEKGMYERYAALFALRNH---GGDEAVSAIIDSL-GATS-ALLKHEVAYVLGQLQNKA----ASAAL  242 (318)
Q Consensus       172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~---~~~~~~~~l~~~l-~d~~-~~vr~~a~~~L~~~~~~~----~~~~L  242 (318)
                      ...+..|+.+|++....   ++..+..+..+   ...-..|.+..++ ...| ..++.-=+..|..+.++.    .+..+
T Consensus       321 ~~i~kaLvrLLrs~~~v---qyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~  397 (968)
T KOG1060|consen  321 TKIAKALVRLLRSNREV---QYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILREL  397 (968)
T ss_pred             HHHHHHHHHHHhcCCcc---hhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence            34567788888766554   55555555444   2233445555544 2333 345555566666666554    44445


Q ss_pred             HHHHhccCCCHHHHHHHHHHHhccC------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcccccCCC
Q 021051          243 SDVLRNVNEHPMVRHEAAEALGSIA------DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPL  315 (318)
Q Consensus       243 ~~~l~~~~~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~~~~~  315 (318)
                      ...+++.  +..+-.++++++|+-+      .+.++..|+.++.+.+..|-.++...+.++-+....+-++++++-+-+
T Consensus       398 q~YI~s~--d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~l  474 (968)
T KOG1060|consen  398 QTYIKSS--DRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARL  474 (968)
T ss_pred             HHHHhcC--chhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence            5555665  5578889999999875      356899999999998999999999999988776665558888775543

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.75  E-value=4.9e-07  Score=84.53  Aligned_cols=249  Identities=20%  Similarity=0.199  Sum_probs=164.1

Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccCCCHHHHHHHHHHHhccC-----------CCCc
Q 021051           21 LCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKDSSNLLAHEAAFALGQMQ-----------DAEA   81 (318)
Q Consensus        21 L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~   81 (318)
                      +...|.+.+.  +.-..++..|..+..        +...+.|...|.++++.||..+++.++++.           ....
T Consensus        43 lf~~L~~~~~--e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l  120 (503)
T PF10508_consen   43 LFDCLNTSNR--EQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL  120 (503)
T ss_pred             HHHHHhhcCh--HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence            6667777765  555667767766543        456777778889999999999999998753           3467


Q ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccc
Q 021051           82 IPALEAVLNDFSLHPIVRHEAAEALGAIGLE----------SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDG  151 (318)
Q Consensus        82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~  151 (318)
                      ++.+..++.  +++..|...|+.+|..+...          .....|.. +...+++.+|..+...+..+.  ..+... 
T Consensus       121 ~~~i~~~L~--~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~-l~~~~~~~vR~Rv~el~v~i~--~~S~~~-  194 (503)
T PF10508_consen  121 LPLIIQCLR--DPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKS-LMSQSSDIVRCRVYELLVEIA--SHSPEA-  194 (503)
T ss_pred             HHHHHHHHc--CCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHH-HHhccCHHHHHHHHHHHHHHH--hcCHHH-
Confidence            888899999  99999999999999988632          22555666 545568888988888888776  111100 


Q ss_pred             cccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHHHHHHHhCCC--C
Q 021051          152 SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVSAIIDSLGAT--S  219 (318)
Q Consensus       152 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~l~d~--~  219 (318)
                      .+.              ......++.++..+.++|.  .++.+++..+..+..          ...++.|.+.+.+.  +
T Consensus       195 ~~~--------------~~~sgll~~ll~eL~~dDi--Lvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~d  258 (503)
T PF10508_consen  195 AEA--------------VVNSGLLDLLLKELDSDDI--LVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEED  258 (503)
T ss_pred             HHH--------------HHhccHHHHHHHHhcCccH--HHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccC
Confidence            000              0123468888888877444  469999999988743          24556666666432  3


Q ss_pred             HHHHHHHH------HHHhccC---C-------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh-hh-----------
Q 021051          220 ALLKHEVA------YVLGQLQ---N-------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD-QS-----------  271 (318)
Q Consensus       220 ~~vr~~a~------~~L~~~~---~-------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-~~-----------  271 (318)
                      |  +...+      ...|.+.   +       +..+..|...+.+.  |+..+..|+.++|.+|.. +.           
T Consensus       259 p--~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~--d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~  334 (503)
T PF10508_consen  259 P--RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQ--DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPA  334 (503)
T ss_pred             C--cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchH
Confidence            3  21122      2223222   1       22333444444444  899999999999999842 11           


Q ss_pred             ----HHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051          272 ----IGLLKEFAKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       272 ----~~~L~~~l~~~~~~vr~~a~~aL~~l  297 (318)
                          +..+.........++|..+..+|..+
T Consensus       335 ~~~~l~~~~~~~~~~~~~lk~r~l~al~~i  364 (503)
T PF10508_consen  335 MKHVLKAIGDAIKSGSTELKLRALHALASI  364 (503)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence                12222234456678999999999988

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=98.68  E-value=6.1e-06  Score=78.93  Aligned_cols=239  Identities=18%  Similarity=0.170  Sum_probs=162.8

Q ss_pred             HHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc---CCCCc
Q 021051           38 ALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAI---GLESN  114 (318)
Q Consensus        38 A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~---~~~~~  114 (318)
                      .++.|+.+.. +.+..+.+-+.......|.....+|...|...++..+.+.+.+..-.+......+..+...   .++..
T Consensus       316 lv~~lR~~~~-e~l~~l~~~~~~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~  394 (574)
T smart00638      316 LVRLLRTLSE-EQLEQLWRQLYEKKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEI  394 (574)
T ss_pred             HHHHHHhCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHH
Confidence            4444444444 4444454444332278899999999999999999999999995333333444444444332   45667


Q ss_pred             HHHHHhhhccC----CCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC----CC
Q 021051          115 IPLLKNSLVSD----PAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG----EE  186 (318)
Q Consensus       115 ~~~L~~~l~~d----~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~----~~  186 (318)
                      +..+.. +.++    +.+.++..+..+++.+.. .....        ..-.   +  ...-.+.++.+...+.+    .+
T Consensus       395 l~~l~~-l~~~~~~~~~~~l~~sa~l~~~~lv~-~~c~~--------~~~~---~--~~~~~~~~~~l~~~l~~~~~~~~  459 (574)
T smart00638      395 LKALFE-LAESPEVQKQPYLRESALLAYGSLVR-RYCVN--------TPSC---P--DFVLEELLKYLHELLQQAVSKGD  459 (574)
T ss_pred             HHHHHH-HhcCccccccHHHHHHHHHHHHHHHH-HHhcC--------CCCC---C--hhhHHHHHHHHHHHHHHHHhcCC
Confidence            777777 4443    367899999999987761 10000        0000   0  00002345555555432    23


Q ss_pred             cChHHHHHHHHHHHhCCChhHHHHHHHHhC-C--CCHHHHHHHHHHHhcc---CCcchHHHHHHHHhccCCCHHHHHHHH
Q 021051          187 KGMYERYAALFALRNHGGDEAVSAIIDSLG-A--TSALLKHEVAYVLGQL---QNKAASAALSDVLRNVNEHPMVRHEAA  260 (318)
Q Consensus       187 ~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~-d--~~~~vr~~a~~~L~~~---~~~~~~~~L~~~l~~~~~~~~vr~~a~  260 (318)
                      ..  .+..++++||++|.+..++.+...+. +  .+..+|..|+.+|.++   .+..+.+.|+..+.+..+++++|.+|+
T Consensus       460 ~~--~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~  537 (574)
T smart00638      460 EE--EIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAV  537 (574)
T ss_pred             ch--heeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHH
Confidence            32  47889999999999999999988775 3  3678999999999976   456788999999998888999999999


Q ss_pred             HHHhcc-CChhhHHHHHHhhc-CCCHHHHHHHHHHH
Q 021051          261 EALGSI-ADDQSIGLLKEFAK-DPEPIVSQSCEVAL  294 (318)
Q Consensus       261 ~aL~~~-~~~~~~~~L~~~l~-~~~~~vr~~a~~aL  294 (318)
                      ..|... .+...+..+...+. +++.+|+......|
T Consensus       538 ~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l  573 (574)
T smart00638      538 LVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHI  573 (574)
T ss_pred             HHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence            999998 56667788887654 67888887766554

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=7.6e-07  Score=80.64  Aligned_cols=275  Identities=18%  Similarity=0.165  Sum_probs=182.1

Q ss_pred             hhcCCCCCHHHHHHHHHHHhccCC---CChHHHHHHhccC---CCHHHHHHHHHHHhccC---CCCcHHHHHHhhh-cCC
Q 021051           24 RLVDPTQPISERFRALFSLRNLKG---PGPRDALIRATKD---SSNLLAHEAAFALGQMQ---DAEAIPALEAVLN-DFS   93 (318)
Q Consensus        24 ~L~~~~~~~~~r~~A~~~l~~~~~---~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l~-~~~   93 (318)
                      .|...+.  |.++.|...||-+..   .+..+.|..+|.+   .+....-.|+++||-+.   .....+.|.+.+. +.|
T Consensus       344 wlgka~n--WaKFtatAslGvIH~gn~n~~~~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr~~TeYL~e~~~~teD  421 (926)
T COG5116         344 WLGKASN--WAKFTATASLGVIHLGNSNPGYEILKPYLPSEVASSRQKEGGALYALGLIKAGFGREDTEYLLEYFLDTED  421 (926)
T ss_pred             hhhhcch--HhhhhhhhhceeEeeccCCchhHhhhccCCcccchhhhccCceeeeehhhccCcCcccHHHHHHHhCcccc
Confidence            4444443  799999999988743   4567788888832   35566777888887653   4467788886655 222


Q ss_pred             CC-HHHHHHHHHHHHhcC----CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccC---CCCcccC-
Q 021051           94 LH-PIVRHEAAEALGAIG----LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTER---SPFMSVD-  164 (318)
Q Consensus        94 ~~-~~vR~~a~~~L~~~~----~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~---~~~~~~~-  164 (318)
                      ++ +.+..+++-.+|-++    +......|.+.+ .......-.++..+++.++--..+...+.+++..   ....... 
T Consensus       422 e~~~~l~yG~~LGiGL~~MgSan~eiye~lKe~l-~nD~a~~geAa~~gMGl~mLgt~s~eai~dm~tya~ETqhe~i~R  500 (926)
T COG5116         422 ELTPELAYGVCLGIGLINMGSANREIYEKLKELL-KNDRALLGEAAVYGMGLLMLGTWSVEAIEDMRTYAGETQHERIKR  500 (926)
T ss_pred             cccHHHHHHHHhhhcchhcccccHHHHHHHHHHH-hcchhhhhhhhhhccceeeecCCCHHHHHHHHHHhcchhhhhHHh
Confidence            22 577788887777543    345678888844 4445566677777777655100011111112110   0000000 


Q ss_pred             ------CCCCCCCCccH-HHHHHHHcCCCcChHHHHHHHHHHHh----CCChhHHHHHHHH-hCCCCHHHHHHHHHHHhc
Q 021051          165 ------PAAPASSCSSV-DMLREVLLGEEKGMYERYAALFALRN----HGGDEAVSAIIDS-LGATSALLKHEVAYVLGQ  232 (318)
Q Consensus       165 ------~~~~~~~~~~~-~~L~~~l~~~~~~~~~r~~a~~~L~~----~~~~~~~~~l~~~-l~d~~~~vr~~a~~~L~~  232 (318)
                            .....+.++.. ..+.+++.+.+.-.  |+..+.+++.    .++...+..+.+. .+|.+..||++|+.+||.
T Consensus       501 glgig~aLi~ygrqe~add~I~ell~d~ds~l--Ry~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGf  578 (926)
T COG5116         501 GLGIGFALILYGRQEMADDYINELLYDKDSIL--RYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGF  578 (926)
T ss_pred             hhhhhhhHhhhhhHHHHHHHHHHHhcCchHHh--hhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheee
Confidence                  00111223333 34555565655544  8877766653    2455677777774 689999999999999998


Q ss_pred             c--CCcchHHHHHHHHhccCCCHHHHHHHHHHHhcc----CChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          233 L--QNKAASAALSDVLRNVNEHPMVRHEAAEALGSI----ADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       233 ~--~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      +  ++...++..++++.+. -++.||...+-+||-.    |+..+++.|..+..|++..||+.|+.|++.|..+...+
T Consensus       579 vc~~D~~~lv~tvelLs~s-hN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~  655 (926)
T COG5116         579 VCCDDRDLLVGTVELLSES-HNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE  655 (926)
T ss_pred             eEecCcchhhHHHHHhhhc-cchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence            6  5778899999999764 3899999998888765    57789999999999999999999999999998887655

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=2.8e-06  Score=77.94  Aligned_cols=255  Identities=20%  Similarity=0.163  Sum_probs=167.1

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHH-------HHHhccCCCChH---HHHHHhccCCCHHHHHHHHHHHhcc-------CC
Q 021051           16 EMEKFLCDRLVDPTQPISERFRAL-------FSLRNLKGPGPR---DALIRATKDSSNLLAHEAAFALGQM-------QD   78 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~-------~~l~~~~~~~~~---~~L~~~l~d~~~~vr~~a~~aL~~~-------~~   78 (318)
                      ..+..|.+...|.+. ...|..+.       ..||....|-.+   +.+...+.|..+.||.+|..+...+       +.
T Consensus       174 ~~l~~l~~ai~dk~~-~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV  252 (569)
T KOG1242|consen  174 GFLDNLSKAIIDKKS-ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV  252 (569)
T ss_pred             hHHHHHHHHhcccch-hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh
Confidence            356667788888875 33443222       223433444444   4444455788999999888776443       23


Q ss_pred             CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 021051           79 AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG  148 (318)
Q Consensus        79 ~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~  148 (318)
                      +..++.++.-+.  +..|....++++.++.+.+          ++.+|.+.+ .+.|..+.||.++..++.+++.     
T Consensus       253 K~llpsll~~l~--~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lse-vl~DT~~evr~a~~~~l~~~~s-----  324 (569)
T KOG1242|consen  253 KLLLPSLLGSLL--EAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSE-VLWDTKPEVRKAGIETLLKFGS-----  324 (569)
T ss_pred             hHhhhhhHHHHH--HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHH-HHccCCHHHHHHHHHHHHHHHH-----
Confidence            445666666666  4589999999999997763          567888999 5689999999999999999982     


Q ss_pred             ccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC-----Ch----hHHHHHHHHhCCCC
Q 021051          149 SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG-----GD----EAVSAIIDSLGATS  219 (318)
Q Consensus       149 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~-----~~----~~~~~l~~~l~d~~  219 (318)
                           ...+.++           ...+|.|++.+.++...   -..++..|+...     +.    -.+|.|...+.+.+
T Consensus       325 -----vidN~dI-----------~~~ip~Lld~l~dp~~~---~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRs  385 (569)
T KOG1242|consen  325 -----VIDNPDI-----------QKIIPTLLDALADPSCY---TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERS  385 (569)
T ss_pred             -----hhccHHH-----------HHHHHHHHHHhcCcccc---hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhcc
Confidence                 1111111           12578899999888754   345667776543     12    23456666777788


Q ss_pred             HHHHHHHHHHHhccC----C--------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC-------ChhhHHHHHHhhc
Q 021051          220 ALLKHEVAYVLGQLQ----N--------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA-------DDQSIGLLKEFAK  280 (318)
Q Consensus       220 ~~vr~~a~~~L~~~~----~--------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~  280 (318)
                      ...++.++...+.|.    +        ++.+|.|...+.++  .|++|.-+.++|+.+-       -+..++.+.+...
T Consensus       386 t~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~  463 (569)
T KOG1242|consen  386 TSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA--VPEVRAVAARALGALLERLGEVSFDDLIPELSETLT  463 (569)
T ss_pred             chhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhc
Confidence            888898999998875    2        23455555566665  8999999999996652       2445667776654


Q ss_pred             C-CCHHHHHHHHHHHHhchhh
Q 021051          281 D-PEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       281 ~-~~~~vr~~a~~aL~~l~~~  300 (318)
                      + ....-|..+...|.....+
T Consensus       464 ~~k~~~~~~g~aq~l~evl~~  484 (569)
T KOG1242|consen  464 SEKSLVDRSGAAQDLSEVLAG  484 (569)
T ss_pred             cchhhhhhHHHhhhHHHHHhc
Confidence            4 2333455555555554433

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=98.58  E-value=8.4e-06  Score=78.77  Aligned_cols=244  Identities=19%  Similarity=0.141  Sum_probs=152.3

Q ss_pred             HHHHhccCCCChHHHHHHhccCC--CHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC---CCC
Q 021051           39 LFSLRNLKGPGPRDALIRATKDS--SNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG---LES  113 (318)
Q Consensus        39 ~~~l~~~~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~---~~~  113 (318)
                      ++.++.+.. +.+..+.+-+...  ....|...+.+|...|...++..+.+++.+..-........+..|....   +.+
T Consensus       353 v~~lr~l~~-~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e  431 (618)
T PF01347_consen  353 VRLLRTLSY-EDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEE  431 (618)
T ss_dssp             HHHHTTS-H-HHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HH
T ss_pred             HHHHhcCCH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHH
Confidence            333344333 4455555555444  6789999999999999999999999999943233333344444444333   344


Q ss_pred             cHHHHHhhhcc----CCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHc----CC
Q 021051          114 NIPLLKNSLVS----DPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLL----GE  185 (318)
Q Consensus       114 ~~~~L~~~l~~----d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~----~~  185 (318)
                      .+..+.. +.+    ..++.++..++.+++.+..........        .....+......++.++.+...+.    ..
T Consensus       432 ~l~~l~~-L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~--------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  502 (618)
T PF01347_consen  432 LLKELFE-LAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDS--------AEFCDPCSRCIIEKYVPYLEQELKEAVSRG  502 (618)
T ss_dssp             HHHHHHH-HHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-------------------SS--GGGTHHHHHHHHHHHHTT
T ss_pred             HHHHHHH-HHhCccccCChhHHHHHHHHHHHHhCceeecccc--------cccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence            5565555 333    246789999999998876100000000        000000001112344555555554    33


Q ss_pred             CcChHHHHHHHHHHHhCCChhHHHHHHHHhCCC---CHHHHHHHHHHHhccC---CcchHHHHHHHHhccCCCHHHHHHH
Q 021051          186 EKGMYERYAALFALRNHGGDEAVSAIIDSLGAT---SALLKHEVAYVLGQLQ---NKAASAALSDVLRNVNEHPMVRHEA  259 (318)
Q Consensus       186 ~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~---~~~vr~~a~~~L~~~~---~~~~~~~L~~~l~~~~~~~~vr~~a  259 (318)
                      +.  ..+..++.+||++|.+..++.+...+.+.   +..+|..|+.+|.++.   +..+.+.|...+.+..+++++|.+|
T Consensus       503 ~~--~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA  580 (618)
T PF01347_consen  503 DE--EEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAA  580 (618)
T ss_dssp             -H--HHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHH
T ss_pred             CH--HHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHH
Confidence            33  35899999999999999999999988665   7899999999999653   2478899999999888899999999


Q ss_pred             HHHHhcc-CChhhHHHHHHhhc-CCCHHHHHHHHHHH
Q 021051          260 AEALGSI-ADDQSIGLLKEFAK-DPEPIVSQSCEVAL  294 (318)
Q Consensus       260 ~~aL~~~-~~~~~~~~L~~~l~-~~~~~vr~~a~~aL  294 (318)
                      ...|..- .+...+..+...+. +++.+|+......|
T Consensus       581 ~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  581 YLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             HHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence            9999997 55667777877664 68899988877665

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=7.9e-06  Score=75.02  Aligned_cols=258  Identities=17%  Similarity=0.124  Sum_probs=156.7

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CChHHHHHHhccCCCHHHHHHHHHHHhccC---------C
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PGPRDALIRATKDSSNLLAHEAAFALGQMQ---------D   78 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---------~   78 (318)
                      ...++.+.+.+.-+.+  ++|......+..+..       ....+.+.+.++...-.-|..+++.+..+-         .
T Consensus        95 ~~~~~~~~~~~~tps~--~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~  172 (569)
T KOG1242|consen   95 ISIIEILLEELDTPSK--SVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE  172 (569)
T ss_pred             hHHHHHHHHhcCCCcH--HHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh
Confidence            3467778888888887  777777776655432       245666667778777777777777775433         2


Q ss_pred             CCcHHHHHHhhhcCCCCHHHHHH-HHHHH----HhcC---CCCc---HHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc
Q 021051           79 AEAIPALEAVLNDFSLHPIVRHE-AAEAL----GAIG---LESN---IPLLKNSLVSDPAQEVRETCELALERIEKLKAS  147 (318)
Q Consensus        79 ~~~~~~L~~~l~~~~~~~~vR~~-a~~~L----~~~~---~~~~---~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~  147 (318)
                      ...+..|.+.+.  +.....++. +..+.    +.+|   .|..   +|.+.. -..|..+.||.++..+...+.+....
T Consensus       173 ~~~l~~l~~ai~--dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~-~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  173 FGFLDNLSKAII--DKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILT-NFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhHHHHHHHHhc--ccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHH-HhhccchhhhHHHHHHHHHHHHhcCc
Confidence            356778888888  666555543 22222    2333   2333   344444 23688999999999999887721111


Q ss_pred             CccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHHHHHHHhCC
Q 021051          148 GSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVSAIIDSLGA  217 (318)
Q Consensus       148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~l~d  217 (318)
                      .                     +-+..++.++.-+.+..|..  ...+++.+|.+..          ++.+|.+.+.+.|
T Consensus       250 ~---------------------aVK~llpsll~~l~~~kWrt--K~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D  306 (569)
T KOG1242|consen  250 Y---------------------AVKLLLPSLLGSLLEAKWRT--KMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD  306 (569)
T ss_pred             c---------------------hhhHhhhhhHHHHHHHhhhh--HHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc
Confidence            1                     01234555555554445554  6666666665532          3556666666677


Q ss_pred             CCHHHHHHHHHHHhccCC----c---ch---------------------------------------HHHHHHHHhccCC
Q 021051          218 TSALLKHEVAYVLGQLQN----K---AA---------------------------------------SAALSDVLRNVNE  251 (318)
Q Consensus       218 ~~~~vr~~a~~~L~~~~~----~---~~---------------------------------------~~~L~~~l~~~~~  251 (318)
                      +.+++|.++..++.+++.    +   ..                                       +|.|...+.+-  
T Consensus       307 T~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR--  384 (569)
T KOG1242|consen  307 TKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER--  384 (569)
T ss_pred             CCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc--
Confidence            777777766666665542    1   12                                       23333333333  


Q ss_pred             CHHHHHHHHHHHhccC----C--------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          252 HPMVRHEAAEALGSIA----D--------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       252 ~~~vr~~a~~aL~~~~----~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      +..+++.++...+++.    +        +..+|.|...+.++.|++|..+..||+.+...-.
T Consensus       385 st~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g  447 (569)
T KOG1242|consen  385 STSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLG  447 (569)
T ss_pred             cchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence            4556677777777764    2        2345666667778899999999999976654433

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=8.8e-07  Score=81.40  Aligned_cols=270  Identities=15%  Similarity=0.094  Sum_probs=162.6

Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHhccCC-----CChHHHHHHhccCCCHHHHHHHHHHHhccCC----------------
Q 021051           20 FLCDRLVDPTQPISERFRALFSLRNLKG-----PGPRDALIRATKDSSNLLAHEAAFALGQMQD----------------   78 (318)
Q Consensus        20 ~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------------   78 (318)
                      .|..+..+.++  .+|..|+..|-.++.     ........+.++|++..||.+|++.+.-++.                
T Consensus       202 ~l~~~~~~~D~--~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~  279 (823)
T KOG2259|consen  202 GLIYLEHDQDF--RVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK  279 (823)
T ss_pred             HHHHHhcCCCc--chHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH
Confidence            37777777776  888888888766544     1234555667788888899888776643331                


Q ss_pred             CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHH-----HHHHHHHHhhhccCccccc
Q 021051           79 AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETC-----ELALERIEKLKASGSDGSS  153 (318)
Q Consensus        79 ~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a-----~~aL~~~~~~~~~~~~~~~  153 (318)
                      +.+...+...+.  |-...||..|..+||.++.. +-..+.+-|-+---...|+..     ...+-.-+.|-.+.+-..+
T Consensus       280 D~aF~~vC~~v~--D~sl~VRV~AaK~lG~~~~v-See~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad  356 (823)
T KOG2259|consen  280 DAAFSSVCRAVR--DRSLSVRVEAAKALGEFEQV-SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD  356 (823)
T ss_pred             HHHHHHHHHHHh--cCceeeeehHHHHhchHHHh-HHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccccc
Confidence            134566677777  78888888888888877642 111222211000001111110     0011111112222110000


Q ss_pred             cccCCCCcccCC-CCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC------hhHHHHHHHHhCCCCHHHHHHH
Q 021051          154 MTERSPFMSVDP-AAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG------DEAVSAIIDSLGATSALLKHEV  226 (318)
Q Consensus       154 ~l~~~~~~~~~~-~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~------~~~~~~l~~~l~d~~~~vr~~a  226 (318)
                      .-.    ...+. ...+....+.-.++..+.|.-.+  ||.+|+.++..+..      ..++..|...++|....||..|
T Consensus       357 vps----ee~d~~~~siI~sGACGA~VhGlEDEf~E--VR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~a  430 (823)
T KOG2259|consen  357 VPS----EEDDEEEESIIPSGACGALVHGLEDEFYE--VRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKA  430 (823)
T ss_pred             Cch----hhccccccccccccccceeeeechHHHHH--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHH
Confidence            000    00000 00011223344556666555444  69999999998854      4788999999999999999999


Q ss_pred             HHHHhccCC-----cchHHHHHHHHhccCCCHHHHHHHHHHHhccC--ChhhHHHHHH-hhcC--CCHHHHHHHHHHHHh
Q 021051          227 AYVLGQLQN-----KAASAALSDVLRNVNEHPMVRHEAAEALGSIA--DDQSIGLLKE-FAKD--PEPIVSQSCEVALSM  296 (318)
Q Consensus       227 ~~~L~~~~~-----~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~~~~~~L~~-~l~~--~~~~vr~~a~~aL~~  296 (318)
                      +.+|..+..     ++.++.+...+.|.  ++++|.+.-+-|+...  +.+++..+.. +++.  .-|+=|.....++..
T Consensus       431 i~aL~~Is~~l~i~eeql~~il~~L~D~--s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~  508 (823)
T KOG2259|consen  431 IFALTMISVHLAIREEQLRQILESLEDR--SVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGR  508 (823)
T ss_pred             HHHHHHHHHHheecHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHH
Confidence            999998763     57889999999998  8999999888887754  5556665554 3332  234446677778887


Q ss_pred             chhhhc
Q 021051          297 LEYEQL  302 (318)
Q Consensus       297 l~~~~~  302 (318)
                      |+.+..
T Consensus       509 iGqnH~  514 (823)
T KOG2259|consen  509 IGQNHR  514 (823)
T ss_pred             HhccCh
Confidence            776543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.52  E-value=2.9e-05  Score=74.46  Aligned_cols=263  Identities=17%  Similarity=0.148  Sum_probs=180.4

Q ss_pred             CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC----
Q 021051           13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD----   78 (318)
Q Consensus        13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----   78 (318)
                      .....++.|++.|.+.+.  .....++..|.++.-          ..+++.|.+++.+++..++..+++.|..+..    
T Consensus       287 ~~~~iV~~Lv~~Ldr~n~--ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~  364 (708)
T PF05804_consen  287 VNKGIVSLLVKCLDRENE--ELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL  364 (708)
T ss_pred             HhcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH
Confidence            456688889999998876  888888888887653          5789999999999999999999999988774    


Q ss_pred             ------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           79 ------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----------LESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        79 ------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                            ...+|.|+.++.  +++  .|..++..|.++.          ..+++|.+.+.+...+++.+...++..+.++.
T Consensus       365 R~~mV~~GlIPkLv~LL~--d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa  440 (708)
T PF05804_consen  365 RSQMVSLGLIPKLVELLK--DPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA  440 (708)
T ss_pred             HHHHHHCCCcHHHHHHhC--CCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence                  367899999999  443  4455666666654          34688999887777788888777766666665


Q ss_pred             hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC---------hhHHHHHHH
Q 021051          143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG---------DEAVSAIID  213 (318)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~---------~~~~~~l~~  213 (318)
                      . . . .....++               ..+.++.|++.......+.     .++.++++..         .+.+..|..
T Consensus       441 ~-~-~-rnaqlm~---------------~g~gL~~L~~ra~~~~D~l-----LlKlIRNiS~h~~~~k~~f~~~i~~L~~  497 (708)
T PF05804_consen  441 L-N-K-RNAQLMC---------------EGNGLQSLMKRALKTRDPL-----LLKLIRNISQHDGPLKELFVDFIGDLAK  497 (708)
T ss_pred             c-C-H-HHHHHHH---------------hcCcHHHHHHHHHhcccHH-----HHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            1 0 0 0000000               1234666665554433332     2333333321         134444445


Q ss_pred             HhC-CCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh----------hh
Q 021051          214 SLG-ATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD----------QS  271 (318)
Q Consensus       214 ~l~-d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~----------~~  271 (318)
                      .+. ..+++...+++..|+.+..           ...+|+|...+.......++..+++..+|.+..+          +.
T Consensus       498 ~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgl  577 (708)
T PF05804_consen  498 IVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGL  577 (708)
T ss_pred             HhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCCh
Confidence            453 3478888999999998863           3568999999976555678999999999987632          44


Q ss_pred             HHHHHHhhcC--CCHHHHHHHHHHHHhchhhhcch
Q 021051          272 IGLLKEFAKD--PEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       272 ~~~L~~~l~~--~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      ++.|..++++  +|.+.-.++..++.++-.+....
T Consensus       578 i~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr  612 (708)
T PF05804_consen  578 IPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR  612 (708)
T ss_pred             HHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH
Confidence            7777787654  56777788888888777765533

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=9.2e-06  Score=75.60  Aligned_cols=250  Identities=15%  Similarity=0.120  Sum_probs=165.4

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCC----hHHHHHHhccCCCHHHHHHHHHHHhccC------CCCcHHHHH
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGPG----PRDALIRATKDSSNLLAHEAAFALGQMQ------DAEAIPALE   86 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~------~~~~~~~L~   86 (318)
                      +.-.+..-|++.+.  ..---|+..|..+.+++    ..+.+..+|++.-|++|..|+-.+.+.-      -..++|.|.
T Consensus       110 ~tn~~rkdl~S~n~--ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~  187 (877)
T KOG1059|consen  110 TTNLLRKDLNSSNV--YEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLV  187 (877)
T ss_pred             HHHHHHHHhccCcc--chhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHH
Confidence            34445566777765  56666777787777764    5666777889999999999999987753      235789999


Q ss_pred             HhhhcCCCCHHHHHHHHHHHHhcC--CCC----cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCC
Q 021051           87 AVLNDFSLHPIVRHEAAEALGAIG--LES----NIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPF  160 (318)
Q Consensus        87 ~~l~~~~~~~~vR~~a~~~L~~~~--~~~----~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~  160 (318)
                      +-|.  |+||.|.-+|+..++.+.  +|+    ..|.|.+++.+..+..+---.+.-++.+.                  
T Consensus       188 EkLe--DpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLt------------------  247 (877)
T KOG1059|consen  188 EKLE--DPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALT------------------  247 (877)
T ss_pred             Hhcc--CCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhcc------------------
Confidence            9999  999999999999999875  333    45778886665555544443444444332                  


Q ss_pred             cccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----C--C-----hhHHHHHHHHhCCCCHHHHHHHHHH
Q 021051          161 MSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----G--G-----DEAVSAIIDSLGATSALLKHEVAYV  229 (318)
Q Consensus       161 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~--~-----~~~~~~l~~~l~d~~~~vr~~a~~~  229 (318)
                          |..+--.+..++.|..++.+... ..+-+.+++++-..    |  +     .-++..|..++.|+|+.++.-.+.+
T Consensus       248 ----plEPRLgKKLieplt~li~sT~A-mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLla  322 (877)
T KOG1059|consen  248 ----PLEPRLGKKLIEPITELMESTVA-MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLA  322 (877)
T ss_pred             ----ccCchhhhhhhhHHHHHHHhhHH-HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence                11111124567888888854433 23455555555333    1  2     1355677778899999999999999


Q ss_pred             HhccCC--cch----HHHHHHHHhccCCCHHHHHHHHHHHhccCChh----hHHHHHHh-hcCCCHHHHHHHHHHHH
Q 021051          230 LGQLQN--KAA----SAALSDVLRNVNEHPMVRHEAAEALGSIADDQ----SIGLLKEF-AKDPEPIVSQSCEVALS  295 (318)
Q Consensus       230 L~~~~~--~~~----~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~----~~~~L~~~-l~~~~~~vr~~a~~aL~  295 (318)
                      ++++..  +.+    .+.++..+.|.  |+.+|..|+.-|-.+-+.+    .+..|... ...+....|.+.+..+=
T Consensus       323 m~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II  397 (877)
T KOG1059|consen  323 MSKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRII  397 (877)
T ss_pred             HHHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            988764  222    36688888887  8999999999887775443    44445543 33344456655544433

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=1.8e-06  Score=80.66  Aligned_cols=259  Identities=14%  Similarity=0.089  Sum_probs=164.0

Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccCCCH-HHHHHHHHHHhccCCCCc---------
Q 021051           20 FLCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKDSSN-LLAHEAAFALGQMQDAEA---------   81 (318)
Q Consensus        20 ~L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~~~~---------   81 (318)
                      -++..|.+++|  ..+-.|.+.++.+..        |+.+..|.....++.+ .++...+.++|.+...-.         
T Consensus        94 ~il~tL~~~ep--~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN  171 (859)
T KOG1241|consen   94 NILRTLGSPEP--RRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSN  171 (859)
T ss_pred             HHHHHcCCCCC--CccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHh
Confidence            35667888887  777777777776543        5667777776655544 599999999999875321         


Q ss_pred             --HHHHHHhhhcCCCCHHHHHHHHHHHHh--------cCCCC----cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc
Q 021051           82 --IPALEAVLNDFSLHPIVRHEAAEALGA--------IGLES----NIPLLKNSLVSDPAQEVRETCELALERIEKLKAS  147 (318)
Q Consensus        82 --~~~L~~~l~~~~~~~~vR~~a~~~L~~--------~~~~~----~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~  147 (318)
                        +-.++.-....+++..||.+|..+|-+        +.++.    ......+ ..+.+|.+|+.++..+|.++.. +..
T Consensus       172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE-atq~~d~~i~~aa~~ClvkIm~-LyY  249 (859)
T KOG1241|consen  172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE-ATQSPDEEIQVAAFQCLVKIMS-LYY  249 (859)
T ss_pred             HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee-cccCCcHHHHHHHHHHHHHHHH-HHH
Confidence              222222222347889999999999854        22211    2344445 5678899999999999999871 100


Q ss_pred             CccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC-----------------C------
Q 021051          148 GSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG-----------------G------  204 (318)
Q Consensus       148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~-----------------~------  204 (318)
                      ..-          .      ..+.+..+..-+..++++++.+  ...+++-=..++                 .      
T Consensus       250 ~~m----------~------~yM~~alfaitl~amks~~deV--alQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~  311 (859)
T KOG1241|consen  250 EFM----------E------PYMEQALFAITLAAMKSDNDEV--ALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKY  311 (859)
T ss_pred             HHH----------H------HHHHHHHHHHHHHHHcCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Confidence            000          0      0000001222223334444433  333332211111                 0      


Q ss_pred             ------hhHHHHHHHHhC-------CCCHHHHHHHHHHHhcc---CC----cchHHHHHHHHhccCCCHHHHHHHHHHHh
Q 021051          205 ------DEAVSAIIDSLG-------ATSALLKHEVAYVLGQL---QN----KAASAALSDVLRNVNEHPMVRHEAAEALG  264 (318)
Q Consensus       205 ------~~~~~~l~~~l~-------d~~~~vr~~a~~~L~~~---~~----~~~~~~L~~~l~~~~~~~~vr~~a~~aL~  264 (318)
                            ...+|.|.+.|.       +++|....+|-.+|.-+   ..    +.++|++.+.++++  ||.-|.+|+-++|
T Consensus       312 fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~p--dwr~reaavmAFG  389 (859)
T KOG1241|consen  312 FARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNP--DWRNREAAVMAFG  389 (859)
T ss_pred             HHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCc--chhhhhHHHHHHH
Confidence                  146677777773       24677777777776644   23    34566666666666  9999999999999


Q ss_pred             ccC--C---------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          265 SIA--D---------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       265 ~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      .+-  .         .++++.++.+..|+.-.||..+.|.|+++-....
T Consensus       390 SIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~  438 (859)
T KOG1241|consen  390 SILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP  438 (859)
T ss_pred             hhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence            983  1         3578889998899999999999999999977655

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1e-05  Score=75.49  Aligned_cols=57  Identities=16%  Similarity=0.123  Sum_probs=30.3

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----CChHHHHHHhccCCCHHHHHHHHHHH
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG----PGPRDALIRATKDSSNLLAHEAAFAL   73 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL   73 (318)
                      ...+-|...|++.+. ..+|.-++.-+|-.+-    .+.-+.|...|..++...-.+|..++
T Consensus       413 ~~~~yL~~~Lk~~~~-e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~M  473 (929)
T KOG2062|consen  413 GITDYLLQQLKTAEN-EVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAM  473 (929)
T ss_pred             cHHHHHHHHHHhccc-hhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhh
Confidence            366777777776663 4677777776655432    23444555555433333333333333

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=3.1e-05  Score=73.04  Aligned_cols=270  Identities=17%  Similarity=0.159  Sum_probs=152.2

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhccCCCC----hHHHHHHhccCCCHHHHHHHHHHHhccCC--C----CcHHHHHH
Q 021051           18 EKFLCDRLVDPTQPISERFRALFSLRNLKGPG----PRDALIRATKDSSNLLAHEAAFALGQMQD--A----EAIPALEA   87 (318)
Q Consensus        18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----~~~~~L~~   87 (318)
                      +..|..-|.+++.  .+...|+.+++.+++++    ..+.+.+++++.++.+|..|+.++.++..  +    ..++...+
T Consensus       109 tNslknDL~s~nq--~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~  186 (866)
T KOG1062|consen  109 TNSLKNDLNSSNQ--YVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRK  186 (866)
T ss_pred             HHHHHhhccCCCe--eehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHH
Confidence            3345566778876  88999999999999865    45566678899999999999988876532  1    23344455


Q ss_pred             hhhcCCCCHHHHHHHHHHHHhcCC---------CCcHHHHHhh---hcc-----------CCCHHHHHHHHHHHHHHHh-
Q 021051           88 VLNDFSLHPIVRHEAAEALGAIGL---------ESNIPLLKNS---LVS-----------DPAQEVRETCELALERIEK-  143 (318)
Q Consensus        88 ~l~~~~~~~~vR~~a~~~L~~~~~---------~~~~~~L~~~---l~~-----------d~~~~vr~~a~~aL~~~~~-  143 (318)
                      +|.  +.+..|-.+.+..+-.+..         .+..+.|...   +.+           =+||.++..+.+.|+-+|. 
T Consensus       187 lL~--ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~  264 (866)
T KOG1062|consen  187 LLC--EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN  264 (866)
T ss_pred             HHh--hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC
Confidence            555  5555554444443322211         1122222221   111           1356666656555555441 


Q ss_pred             -----------------hhccCccc-----cccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHh
Q 021051          144 -----------------LKASGSDG-----SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRN  201 (318)
Q Consensus       144 -----------------~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~  201 (318)
                                       ..++....     -++...  +-...+...+ ...++..|-++|.+++..+  |+.|+..|.+
T Consensus       265 d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~T--I~~I~~~~~L-rvlainiLgkFL~n~d~Ni--rYvaLn~L~r  339 (866)
T KOG1062|consen  265 DADASDLMNDILAQVATNTDSSKNAGNAILYECVRT--IMDIRSNSGL-RVLAINILGKFLLNRDNNI--RYVALNMLLR  339 (866)
T ss_pred             CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHH--HHhccCCchH-HHHHHHHHHHHhcCCccce--eeeehhhHHh
Confidence                             00000000     000000  0000000000 1235667778887877776  8888888877


Q ss_pred             CC--ChhH----HHHHHHHhCCCCHHHHHHHHHHHhccCCcc----hHHHHHHHHhccCCCHHHHHHHHHHHhccC----
Q 021051          202 HG--GDEA----VSAIIDSLGATSALLKHEVAYVLGQLQNKA----ASAALSDVLRNVNEHPMVRHEAAEALGSIA----  267 (318)
Q Consensus       202 ~~--~~~~----~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~----~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----  267 (318)
                      .-  ++.+    ...+++||+|+|..+|+.|+..+-.+-++.    .+..|+.++...  ++..|...+..+..+.    
T Consensus       340 ~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~--d~~~k~~~as~I~~laEkfa  417 (866)
T KOG1062|consen  340 VVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESS--DEDFKADIASKIAELAEKFA  417 (866)
T ss_pred             hhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhcC
Confidence            62  2333    356889999999999999999998876643    456677777765  6777765555444432    


Q ss_pred             Chh--hHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051          268 DDQ--SIGLLKEFAKDPEPIVSQSCEVALSMLE  298 (318)
Q Consensus       268 ~~~--~~~~L~~~l~~~~~~vr~~a~~aL~~l~  298 (318)
                      ..+  -++.+.+.+......|+..+...+-++-
T Consensus       418 P~k~W~idtml~Vl~~aG~~V~~dv~~nll~LI  450 (866)
T KOG1062|consen  418 PDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLI  450 (866)
T ss_pred             CcchhHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence            222  3555555555444455555554444443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=3.8e-05  Score=72.32  Aligned_cols=84  Identities=17%  Similarity=0.206  Sum_probs=55.3

Q ss_pred             HhCCCCHHHHHHHHHHHhccCCc----chHHHHHHHHhccCCCHHHHHHHHHHHhccC----------------------
Q 021051          214 SLGATSALLKHEVAYVLGQLQNK----AASAALSDVLRNVNEHPMVRHEAAEALGSIA----------------------  267 (318)
Q Consensus       214 ~l~d~~~~vr~~a~~~L~~~~~~----~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----------------------  267 (318)
                      ++.+.++.|..++++++..+.++    .....|+.++..   ++.+|+..+..+..+.                      
T Consensus       295 Ll~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~  371 (968)
T KOG1060|consen  295 LLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS---NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPT  371 (968)
T ss_pred             HHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHH
Confidence            44567888888999999888875    345667777765   3556665555555443                      


Q ss_pred             --------------C----hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          268 --------------D----DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       268 --------------~----~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                                    +    ...+..+..+.++.+..+...++.||+++...
T Consensus       372 ~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~  422 (968)
T KOG1060|consen  372 QVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASR  422 (968)
T ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence                          1    12344555667777767888888888877654

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.36  E-value=3.4e-05  Score=70.36  Aligned_cols=257  Identities=19%  Similarity=0.158  Sum_probs=162.7

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----C----ChHHHHHHhccCCCHHHHHHHHHHHhccCC--C----CcH
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG----P----GPRDALIRATKDSSNLLAHEAAFALGQMQD--A----EAI   82 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----~~~   82 (318)
                      ..+.|-..|.++-.  .+...+++.+..+..    +    ..+..|..+|++.....|..|++.|.++.-  +    .+-
T Consensus       265 ~rpfL~~wls~k~e--mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN  342 (898)
T COG5240         265 LRPFLNSWLSDKFE--MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN  342 (898)
T ss_pred             HHHHHHHHhcCcch--hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence            34445555555543  566666666555322    1    244555556678888889999999887652  1    234


Q ss_pred             HHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhh---hccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCC
Q 021051           83 PALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNS---LVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSP  159 (318)
Q Consensus        83 ~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~---l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~  159 (318)
                      +.+..++.  |.+..+-..|+..|-+.|..+.++.|.+.   +.+|-+...+..++.++..+..  .             
T Consensus       343 ~evEsLIs--d~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl--~-------------  405 (898)
T COG5240         343 KEVESLIS--DENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSL--L-------------  405 (898)
T ss_pred             hhHHHHhh--cccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHh--h-------------
Confidence            66777777  78888888899999888888777665552   2345555566666666665541  0             


Q ss_pred             CcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC------ChhHHHHHHHHhCC-CCHHHHHHHHHHHhc
Q 021051          160 FMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG------GDEAVSAIIDSLGA-TSALLKHEVAYVLGQ  232 (318)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~------~~~~~~~l~~~l~d-~~~~vr~~a~~~L~~  232 (318)
                          .|..+   ...+..|...|.+. ..+.-+..++.++..+-      .+.+++.|...+.| ..+.+-...+..||+
T Consensus       406 ----Fp~k~---~s~l~FL~~~L~~e-Gg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~  477 (898)
T COG5240         406 ----FPSKK---LSYLDFLGSSLLQE-GGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGR  477 (898)
T ss_pred             ----CcHHH---HHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcc
Confidence                00000   11344455555442 22223666677665541      23566666666655 357777788888888


Q ss_pred             cCCc-----chHHHHHHHHhccCCCHHHHHHHHHHHhccCC-------hh-hHHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051          233 LQNK-----AASAALSDVLRNVNEHPMVRHEAAEALGSIAD-------DQ-SIGLLKEFAKDPEPIVSQSCEVALSMLEY  299 (318)
Q Consensus       233 ~~~~-----~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-------~~-~~~~L~~~l~~~~~~vr~~a~~aL~~l~~  299 (318)
                      -++.     ..+-.+...+-=.  +.-||.+|+.+|.+++-       ++ ....|.++++|.+..||..|.-+|..+..
T Consensus       478 EgP~a~~P~~yvrhIyNR~iLE--N~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         478 EGPRAKTPGKYVRHIYNRLILE--NNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             cCCCCCCcchHHHHHHHHHHHh--hhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence            7652     2344444444333  67899999999988772       23 45566679999999999999999998875


Q ss_pred             hhc
Q 021051          300 EQL  302 (318)
Q Consensus       300 ~~~  302 (318)
                      ..+
T Consensus       556 ~da  558 (898)
T COG5240         556 SDA  558 (898)
T ss_pred             hhh
Confidence            433

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.34  E-value=3.5e-05  Score=65.22  Aligned_cols=164  Identities=19%  Similarity=0.183  Sum_probs=101.1

Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcc
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALGAIG----------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSD  150 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~  150 (318)
                      .++.|+.+|+. ..||.++..+..++++..          +.+.++.+.. +..++++.+|..|..++.++..  .....
T Consensus        13 ~l~~Ll~lL~~-t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~-lL~~p~~~vr~~AL~aL~Nls~--~~en~   88 (254)
T PF04826_consen   13 ELQKLLCLLES-TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGS-LLNDPNPSVREKALNALNNLSV--NDENQ   88 (254)
T ss_pred             HHHHHHHHHhc-CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHH-HcCCCChHHHHHHHHHHHhcCC--ChhhH
Confidence            34455555552 345555555555555443          2345566666 5566777777777777776540  00000


Q ss_pred             ccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--------hhHHHHHHHHhCCCCHHH
Q 021051          151 GSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--------DEAVSAIIDSLGATSALL  222 (318)
Q Consensus       151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~l~d~~~~v  222 (318)
                                ..        -+..++.+.+..........++.+++.+|.++..        ...++.+..++...+..+
T Consensus        89 ----------~~--------Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~  150 (254)
T PF04826_consen   89 ----------EQ--------IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKT  150 (254)
T ss_pred             ----------HH--------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHH
Confidence                      00        0123455555544443333468889999998853        256778888888889999


Q ss_pred             HHHHHHHHhccCC----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          223 KHEVAYVLGQLQN----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       223 r~~a~~~L~~~~~----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                      |..+++.|..+..          .++...++.++... ++.++-..++.-..++.
T Consensus       151 k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~  204 (254)
T PF04826_consen  151 KVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENIN  204 (254)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHH
Confidence            9999999998864          34566777777653 36777777777777763

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=3e-05  Score=72.30  Aligned_cols=233  Identities=15%  Similarity=0.125  Sum_probs=151.4

Q ss_pred             cCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--C----ChHHHHHHhccCCCHHHHHHHHHHHhccCCC------
Q 021051           12 KSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG--P----GPRDALIRATKDSSNLLAHEAAFALGQMQDA------   79 (318)
Q Consensus        12 ~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------   79 (318)
                      .+.-.....+..+|.+..+  ++|.+|+-.+.+..-  |    ...+.|.+-|.|+||.|..+|+..+.++...      
T Consensus       140 dLARDLa~Dv~tLL~sskp--YvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL  217 (877)
T KOG1059|consen  140 DLARDLADDVFTLLNSSKP--YVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL  217 (877)
T ss_pred             hhhHHHHHHHHHHHhcCch--HHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence            3444567788899999998  999999999988654  2    4567778888999999999999999887632      


Q ss_pred             CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccc
Q 021051           80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSS  153 (318)
Q Consensus        80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~  153 (318)
                      ...|.+.+++.+ ..+-++-...+..++.+..      ...++.|..++.+-..-.+-..++.++....           
T Consensus       218 ~LAP~ffklltt-SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s-----------  285 (877)
T KOG1059|consen  218 QLAPLFYKLLVT-SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVS-----------  285 (877)
T ss_pred             cccHHHHHHHhc-cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeeh-----------
Confidence            457889999995 4555555677777776642      3456666663322222233333333332111           


Q ss_pred             cccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--h----hHHHHHHHHhCCCCHHHHHHHH
Q 021051          154 MTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--D----EAVSAIIDSLGATSALLKHEVA  227 (318)
Q Consensus       154 ~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--~----~~~~~l~~~l~d~~~~vr~~a~  227 (318)
                            +....+.....-..-+..|..++.+.+...  ++.++-+++++..  +    .--..++++|.|.|+.+|..|+
T Consensus       286 ------~s~g~~d~~asiqLCvqKLr~fiedsDqNL--KYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrAL  357 (877)
T KOG1059|consen  286 ------MSSGMSDHSASIQLCVQKLRIFIEDSDQNL--KYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRAL  357 (877)
T ss_pred             ------hccCCCCcHHHHHHHHHHHhhhhhcCCccH--HHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHH
Confidence                  000000000000123566777788888886  9999999988853  2    2235678899999999999999


Q ss_pred             HHHhccCCcc----hHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          228 YVLGQLQNKA----ASAALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       228 ~~L~~~~~~~----~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                      ..|-.|-+++    .+..|+..+... +....|.+.+..+..+.
T Consensus       358 dLl~gmVskkNl~eIVk~LM~~~~~a-e~t~yrdell~~II~iC  400 (877)
T KOG1059|consen  358 DLLYGMVSKKNLMEIVKTLMKHVEKA-EGTNYRDELLTRIISIC  400 (877)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHh
Confidence            9998776543    445555555544 23467766666555554

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.26  E-value=7e-06  Score=61.08  Aligned_cols=59  Identities=22%  Similarity=0.198  Sum_probs=43.0

Q ss_pred             chHHHHHHHHhccCCCHHHHHHHHHHHhccCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051          237 AASAALSDVLRNVNEHPMVRHEAAEALGSIAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l  297 (318)
                      ..++.|.+++.+.  ++.++..++.+|+++..           .+.++.|.+.+++++..++..+.++|.++
T Consensus        49 ~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l  118 (120)
T cd00020          49 GGLPALVQLLKSE--DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL  118 (120)
T ss_pred             CChHHHHHHHhCC--CHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            5666777777665  67777777777777642           23577888888888888999998888765

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.24  E-value=2.4e-05  Score=75.28  Aligned_cols=255  Identities=18%  Similarity=0.187  Sum_probs=155.4

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccC---C---------CChHHHHHHhccCCCHHHHHHHHHHHhccC------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLK---G---------PGPRDALIRATKDSSNLLAHEAAFALGQMQ------   77 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~---~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------   77 (318)
                      +.++.....+++..  |.+|..+..-...+.   .         ....+.+..+..|.+..+|.+.+.......      
T Consensus       355 ~~~~~~~~l~~~~~--~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~  432 (759)
T KOG0211|consen  355 QLVPPVSNLLKDEE--WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE  432 (759)
T ss_pred             cchhhHHHHhcchh--hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC
Confidence            34555566666554  355655544433321   1         123455556667777777776666554431      


Q ss_pred             --CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc---C--------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 021051           78 --DAEAIPALEAVLNDFSLHPIVRHEAAEALGAI---G--------LESNIPLLKNSLVSDPAQEVRETCELALERIEKL  144 (318)
Q Consensus        78 --~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~---~--------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~  144 (318)
                        .....|.+...++  +.++.||...+.-+...   .        ....+|.+.. +..|..+++|.+..+.+..+.. 
T Consensus       433 ~ti~~llp~~~~~l~--de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~e-l~~d~~wRvr~ail~~ip~la~-  508 (759)
T KOG0211|consen  433 RTISELLPLLIGNLK--DEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVE-LAEDLLWRVRLAILEYIPQLAL-  508 (759)
T ss_pred             cCccccChhhhhhcc--hhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhh-hccchhHHHHHHHHHHHHHHHH-
Confidence              1233455566666  77778877777543321   1        1234566666 5566677788777777766550 


Q ss_pred             hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----C----ChhHHHHHHHHhC
Q 021051          145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----G----GDEAVSAIIDSLG  216 (318)
Q Consensus       145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~----~~~~~~~l~~~l~  216 (318)
                      ..+                   ..+.++...+.+...+.+...++  |..|...+..+    |    ....++.+.....
T Consensus       509 q~~-------------------~~~~~~~~~~l~~~~l~d~v~~I--r~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~  567 (759)
T KOG0211|consen  509 QLG-------------------VEFFDEKLAELLRTWLPDHVYSI--REAAARNLPALVETFGSEWARLEEIPKLLAMDL  567 (759)
T ss_pred             hhh-------------------hHHhhHHHHHHHHhhhhhhHHHH--HHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhc
Confidence            000                   00011234455555555544444  77777666543    3    2345566666666


Q ss_pred             CCCHHHHHHHHHHHhccC----C----cchHHHHHHHHhccCCCHHHHHHHHHHHhccC--------ChhhHHHHHHhhc
Q 021051          217 ATSALLKHEVAYVLGQLQ----N----KAASAALSDVLRNVNEHPMVRHEAAEALGSIA--------DDQSIGLLKEFAK  280 (318)
Q Consensus       217 d~~~~vr~~a~~~L~~~~----~----~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~  280 (318)
                      +++..+|...+.++..+.    .    +..+|.+..+..|+  .++||..+++.|-.+.        +....+.+..+..
T Consensus       568 q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~  645 (759)
T KOG0211|consen  568 QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSS  645 (759)
T ss_pred             CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhcc
Confidence            667888877766665432    2    45678888888887  8999999999999886        2346777777888


Q ss_pred             CCCHHHHHHHHHHHHhchh
Q 021051          281 DPEPIVSQSCEVALSMLEY  299 (318)
Q Consensus       281 ~~~~~vr~~a~~aL~~l~~  299 (318)
                      |++..||..|..|++.+..
T Consensus       646 d~~~dvr~~a~~a~~~i~l  664 (759)
T KOG0211|consen  646 DQELDVRYRAILAFGSIEL  664 (759)
T ss_pred             CcccchhHHHHHHHHHHHH
Confidence            9999999999998886643

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.20  E-value=0.00015  Score=69.68  Aligned_cols=208  Identities=16%  Similarity=0.197  Sum_probs=135.4

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC---CcHH
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA---EAIP   83 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---~~~~   83 (318)
                      +......|..-+.++..+..+|.-|+-.+|++|.       ++.-..+++.|++++..|+.+|.++||.+...   ..+|
T Consensus       815 s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLp  894 (1233)
T KOG1824|consen  815 SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLP  894 (1233)
T ss_pred             chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHH
Confidence            3344555555555555445789999999999875       46777888999999999999999999998863   4577


Q ss_pred             HHHHhhhcCCCCHHHHHHHHH-HHHhcCC---CCcHHHHHhhhc---cCCCHHHHHHHHHHHHHHHhhhccCcccccccc
Q 021051           84 ALEAVLNDFSLHPIVRHEAAE-ALGAIGL---ESNIPLLKNSLV---SDPAQEVRETCELALERIEKLKASGSDGSSMTE  156 (318)
Q Consensus        84 ~L~~~l~~~~~~~~vR~~a~~-~L~~~~~---~~~~~~L~~~l~---~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~  156 (318)
                      .+++.+.++.....+-..++. .+..-..   ...++.+-..+.   .......|...+++||++. .            
T Consensus       895 fil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~-l------------  961 (1233)
T KOG1824|consen  895 FILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV-L------------  961 (1233)
T ss_pred             HHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH-h------------
Confidence            777777733233333222222 2222221   122333222222   2335667999999999887 1            


Q ss_pred             CCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHHHHHHHhCCCCHHHHHHH
Q 021051          157 RSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVSAIIDSLGATSALLKHEV  226 (318)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a  226 (318)
                            .+      ++..+|.|...+.++....  |..++.++...-.          ...+..+..+++|++..||+.|
T Consensus       962 ------~e------pesLlpkL~~~~~S~a~~~--rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~Vrrva 1027 (1233)
T KOG1824|consen  962 ------IE------PESLLPKLKLLLRSEASNT--RSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVA 1027 (1233)
T ss_pred             ------CC------hHHHHHHHHHHhcCCCcch--hhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence                  11      2456888999998888776  8888777655421          2444566677899999999999


Q ss_pred             HHHHhccCC------cchHHHHHHHHhc
Q 021051          227 AYVLGQLQN------KAASAALSDVLRN  248 (318)
Q Consensus       227 ~~~L~~~~~------~~~~~~L~~~l~~  248 (318)
                      +.++.....      .+.+|.|+..+-+
T Consensus      1028 Lvv~nSaahNKpslIrDllpeLLp~Ly~ 1055 (1233)
T KOG1824|consen 1028 LVVLNSAAHNKPSLIRDLLPELLPLLYS 1055 (1233)
T ss_pred             HHHHHHHHccCHhHHHHHHHHHHHHHHH
Confidence            999876532      2345666655543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.19  E-value=0.00017  Score=61.03  Aligned_cols=212  Identities=14%  Similarity=0.100  Sum_probs=137.5

Q ss_pred             CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC---
Q 021051           13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA---   79 (318)
Q Consensus        13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---   79 (318)
                      ++....+.|..+|+..+ ++.++..++.+++....          -..++.+...++++++.+|..|+++|..+...   
T Consensus         9 l~~~~l~~Ll~lL~~t~-dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTE-DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            67788899999999654 23899999999988754          36788889999999999999999999977642   


Q ss_pred             -----CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC--------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhc
Q 021051           80 -----EAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE--------SNIPLLKNSLVSDPAQEVRETCELALERIEKLKA  146 (318)
Q Consensus        80 -----~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~--------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~  146 (318)
                           ..++.+.+.+.....+..++..++++|.++...        ..++.|.. ++...+..+|..+...|.++. +.+
T Consensus        88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~-LL~~G~~~~k~~vLk~L~nLS-~np  165 (254)
T PF04826_consen   88 QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLS-LLSSGSEKTKVQVLKVLVNLS-ENP  165 (254)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHH-HHHcCChHHHHHHHHHHHHhc-cCH
Confidence                 235555555553345789999999999998632        36778888 556778899999999999887 110


Q ss_pred             cCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCC-----CHH
Q 021051          147 SGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGAT-----SAL  221 (318)
Q Consensus       147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~-----~~~  221 (318)
                      ..  ..+               +...++.+.+..++..+.... ....++..+.++..         .++.+     ++.
T Consensus       166 ~~--~~~---------------Ll~~q~~~~~~~Lf~~~~~~~-~l~~~l~~~~ni~~---------~~~~~~~~~~~~~  218 (254)
T PF04826_consen  166 DM--TRE---------------LLSAQVLSSFLSLFNSSESKE-NLLRVLTFFENINE---------NIKKEAYVFVQDD  218 (254)
T ss_pred             HH--HHH---------------HHhccchhHHHHHHccCCccH-HHHHHHHHHHHHHH---------hhCcccceecccc
Confidence            00  001               112346677777775553332 34455555554422         11111     111


Q ss_pred             HHHHHHHHHhccCCc-chHHHHHHHHhccCCCHHHHHH
Q 021051          222 LKHEVAYVLGQLQNK-AASAALSDVLRNVNEHPMVRHE  258 (318)
Q Consensus       222 vr~~a~~~L~~~~~~-~~~~~L~~~l~~~~~~~~vr~~  258 (318)
                      .....+..+  +++. ...+.|..+..++  |++||..
T Consensus       219 ~~~~~L~~~--~~e~~~~~~~l~~l~~h~--d~ev~~~  252 (254)
T PF04826_consen  219 FSEDSLFSL--FGESSQLAKKLQALANHP--DPEVKEQ  252 (254)
T ss_pred             CCchhHHHH--HccHHHHHHHHHHHHcCC--CHHHhhh
Confidence            111222211  2332 3566777777776  8888864

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=6.5e-06  Score=75.90  Aligned_cols=216  Identities=19%  Similarity=0.151  Sum_probs=140.0

Q ss_pred             HHHhccCCCHHHHHHHHHHHhccCCC-----CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC----------------
Q 021051           54 LIRATKDSSNLLAHEAAFALGQMQDA-----EAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE----------------  112 (318)
Q Consensus        54 L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~----------------  112 (318)
                      |+.+..+.++.||..|+.+|-.++..     .......+.+.  |++..||.+|++.+.-+++-                
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~ls--D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D  280 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLS--DDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD  280 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH
Confidence            56666788888888888886555531     23566677777  78888888888877654421                


Q ss_pred             CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC----CCcC
Q 021051          113 SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG----EEKG  188 (318)
Q Consensus       113 ~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~----~~~~  188 (318)
                      +++..+.. ...|-...||-.|+.+||.+..  -+...                       ...+|-+-+-+    ....
T Consensus       281 ~aF~~vC~-~v~D~sl~VRV~AaK~lG~~~~--vSee~-----------------------i~QTLdKKlms~lRRkr~a  334 (823)
T KOG2259|consen  281 AAFSSVCR-AVRDRSLSVRVEAAKALGEFEQ--VSEEI-----------------------IQQTLDKKLMSRLRRKRTA  334 (823)
T ss_pred             HHHHHHHH-HHhcCceeeeehHHHHhchHHH--hHHHH-----------------------HHHHHHHHHhhhhhhhhhc
Confidence            13444555 4567778888888888877651  00000                       00111111100    0000


Q ss_pred             hHHHHHHHHHHHhCC----------------------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC------cchHH
Q 021051          189 MYERYAALFALRNHG----------------------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN------KAASA  240 (318)
Q Consensus       189 ~~~r~~a~~~L~~~~----------------------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~------~~~~~  240 (318)
                       ..|...+..=|.+.                      ...+...+++.+.|..-+||.+|+.++..+.-      ..++.
T Consensus       335 -hkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~ald  413 (823)
T KOG2259|consen  335 -HKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALD  413 (823)
T ss_pred             -ccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence             00111222222110                      01234556777888889999999999998753      35789


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHhccC-----ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          241 ALSDVLRNVNEHPMVRHEAAEALGSIA-----DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       241 ~L~~~l~~~~~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      .|++.+.|.  ...||..|+.+|-.|.     ..+.++.+.+.+.|..++||.++..-|+..+..
T Consensus       414 fLvDMfNDE--~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~  476 (823)
T KOG2259|consen  414 FLVDMFNDE--IEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKNARVS  476 (823)
T ss_pred             HHHHHhccH--HHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence            999999987  7899999999998886     356788888999999999999988888776544

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.15  E-value=5.1e-05  Score=71.10  Aligned_cols=222  Identities=17%  Similarity=0.163  Sum_probs=140.1

Q ss_pred             HhccCCCHHHHHHHHHHHhccCC-------CC----cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CC
Q 021051           56 RATKDSSNLLAHEAAFALGQMQD-------AE----AIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ES  113 (318)
Q Consensus        56 ~~l~d~~~~vr~~a~~aL~~~~~-------~~----~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~  113 (318)
                      ..|+++++.+|..|+..++.+..       ..    .--.|.+.|.  +++|.|-...+.++..+-+           .+
T Consensus       806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylg--eeypEvLgsILgAikaI~nvigm~km~pPi~d  883 (1172)
T KOG0213|consen  806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLG--EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD  883 (1172)
T ss_pred             HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcC--cccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence            34456666666666665554321       00    0122334444  5555555444444433211           23


Q ss_pred             cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCcc---HHHHHHHHcCCCcChH
Q 021051          114 NIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSS---VDMLREVLLGEEKGMY  190 (318)
Q Consensus       114 ~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~L~~~l~~~~~~~~  190 (318)
                      .+|.|.. .+++.+..|..+++.-++.++  ..+.+          +.        +.++.   .=.|+++|..-+..+ 
T Consensus       884 llPrltP-ILknrheKVqen~IdLvg~Ia--drgpE----------~v--------~aREWMRIcfeLlelLkahkK~i-  941 (1172)
T KOG0213|consen  884 LLPRLTP-ILKNRHEKVQENCIDLVGTIA--DRGPE----------YV--------SAREWMRICFELLELLKAHKKEI-  941 (1172)
T ss_pred             hcccchH-hhhhhHHHHHHHHHHHHHHHH--hcCcc----------cC--------CHHHHHHHHHHHHHHHHHHHHHH-
Confidence            5566666 446777888888888888877  11111          00        01111   224677777777776 


Q ss_pred             HHHHHHHHHHhC----CChhHHHHHHHHhCCCCHHHHHH---HHHHHhccCCc-chHHHHHHHHhccCCCHHHHHHHHHH
Q 021051          191 ERYAALFALRNH----GGDEAVSAIIDSLGATSALLKHE---VAYVLGQLQNK-AASAALSDVLRNVNEHPMVRHEAAEA  262 (318)
Q Consensus       191 ~r~~a~~~L~~~----~~~~~~~~l~~~l~d~~~~vr~~---a~~~L~~~~~~-~~~~~L~~~l~~~~~~~~vr~~a~~a  262 (318)
                       |++|+..+|.+    |..+.+..|.+.|+..+-..|..   |+...++.+.+ .++|.|+.-...+  +.+|+...+++
T Consensus       942 -RRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP--e~nVQnGVLka 1018 (1172)
T KOG0213|consen  942 -RRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP--EANVQNGVLKA 1018 (1172)
T ss_pred             -HHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc--hhHHHHhHHHH
Confidence             99999999876    56788888888887655555543   44455565555 6788888888876  78899988888


Q ss_pred             Hhcc----CCh------hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          263 LGSI----ADD------QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       263 L~~~----~~~------~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      |..+    |..      ...|.|..++-|.+..-|+.|..++..+..+..+.
T Consensus      1019 lsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~ 1070 (1172)
T KOG0213|consen 1019 LSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGT 1070 (1172)
T ss_pred             HHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCc
Confidence            8764    321      35788888999999999999999999887665543

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.15  E-value=2.9e-05  Score=57.71  Aligned_cols=90  Identities=26%  Similarity=0.338  Sum_probs=55.0

Q ss_pred             hHHHHHHhccCCCHHHHHHHHHHHhccCCC-----------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-------
Q 021051           50 PRDALIRATKDSSNLLAHEAAFALGQMQDA-----------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-------  111 (318)
Q Consensus        50 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-------  111 (318)
                      .++.|.+.+.+.++.+|..++++|+.+...           ..++.+.+++.  ++++.++..++.+|+++..       
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            344444444444444555555554444322           55666666666  5666777777776666542       


Q ss_pred             ----CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051          112 ----ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus       112 ----~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                          .+.++.|.+ +..+++..++..+.++|.++.
T Consensus        86 ~~~~~g~l~~l~~-~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          86 IVLEAGGVPKLVN-LLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHCCChHHHHH-HHhcCCHHHHHHHHHHHHHhh
Confidence                235777777 556778888888888887653

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.14  E-value=0.00099  Score=64.21  Aligned_cols=258  Identities=17%  Similarity=0.125  Sum_probs=173.2

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccC------
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQ------   77 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------   77 (318)
                      ....++.|.+++.+++.  ..+..+++.|.++..          ...++.|..+|.+++  .+..++..|..+.      
T Consensus       329 ~~giV~kL~kLl~s~~~--~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r  404 (708)
T PF05804_consen  329 ESGIVEKLLKLLPSENE--DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEAR  404 (708)
T ss_pred             HcCCHHHHHHHhcCCCH--HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhH
Confidence            45689999999999886  889999999988865          367889999998664  3344555554433      


Q ss_pred             ----CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 021051           78 ----DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----------LESNIPLLKNSLVSDPAQEVRETCELALERIEK  143 (318)
Q Consensus        78 ----~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~  143 (318)
                          ..+++|.+.+++.. .+++.+...++..+.++.          ..+.++.|.+...+..|+-+-    ..+.++..
T Consensus       405 ~~f~~TdcIp~L~~~Ll~-~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLl----KlIRNiS~  479 (708)
T PF05804_consen  405 SMFAYTDCIPQLMQMLLE-NSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLL----KLIRNISQ  479 (708)
T ss_pred             HHHhhcchHHHHHHHHHh-CCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHH----HHHHHHHh
Confidence                34689999998773 466666655555555443          224566666666666665432    34444441


Q ss_pred             hhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHHH
Q 021051          144 LKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAII  212 (318)
Q Consensus       144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~  212 (318)
                      +  ..+. ...+                ...+..|.+.+..++.+ .....++..|+++..           ...+|.+.
T Consensus       480 h--~~~~-k~~f----------------~~~i~~L~~~v~~~~~e-e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~  539 (708)
T PF05804_consen  480 H--DGPL-KELF----------------VDFIGDLAKIVSSGDSE-EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLK  539 (708)
T ss_pred             c--CchH-HHHH----------------HHHHHHHHHHhhcCCcH-HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHH
Confidence            1  1100 0000                12466677777665543 246677777777742           25677788


Q ss_pred             HHhCC--CCHHHHHHHHHHHhccCC----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC-----------Ch
Q 021051          213 DSLGA--TSALLKHEVAYVLGQLQN----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA-----------DD  269 (318)
Q Consensus       213 ~~l~d--~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-----------~~  269 (318)
                      +.|..  ..+.+..+++..+|.+..          ...++.|++++....+|.+.-...+.++.++-           ..
T Consensus       540 ~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~  619 (708)
T PF05804_consen  540 DLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKET  619 (708)
T ss_pred             HHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhcc
Confidence            87753  356788888888887642          45688899999877667777777777766642           34


Q ss_pred             hhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          270 QSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       270 ~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      ++...|..++.|.++.||+.|-.+|.-+...
T Consensus       620 ~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~  650 (708)
T PF05804_consen  620 EIPAYLIDLMHDKNAEIRKVCDNALDIIAEY  650 (708)
T ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            6788899999999999999999998876443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.00  E-value=0.00015  Score=66.26  Aligned_cols=229  Identities=17%  Similarity=0.134  Sum_probs=148.1

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--C----ChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHh
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG--P----GPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAV   88 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~   88 (318)
                      ..++..|..+|.++..  ..|+.|++.|..+..  |    ...+.+..+.+|.+..+-..|+..|-+.|....++.|...
T Consensus       302 ~~~vs~L~~fL~s~rv--~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~  379 (898)
T COG5240         302 DQTVSSLRTFLKSTRV--VLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNL  379 (898)
T ss_pred             HHHHHHHHHHHhcchH--HHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHH
Confidence            4567778889999987  899999999988754  2    2345566677899999999999999999988887777666


Q ss_pred             hhcC-----CCCHHHHHHHHHHHHhcCC---CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCC
Q 021051           89 LNDF-----SLHPIVRHEAAEALGAIGL---ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPF  160 (318)
Q Consensus        89 l~~~-----~~~~~vR~~a~~~L~~~~~---~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~  160 (318)
                      +.+.     |.--.+-..|++.|+..=.   ...+..|...+.+...-..++.++.++.....+.+..            
T Consensus       380 I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s------------  447 (898)
T COG5240         380 IPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS------------  447 (898)
T ss_pred             HHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH------------
Confidence            5521     2223344566666664321   2345666676666777788899999998776211110            


Q ss_pred             cccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----hHHHHHHHHhCCCCHHHHHHHHHHHhccCC
Q 021051          161 MSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----EAVSAIIDSLGATSALLKHEVAYVLGQLQN  235 (318)
Q Consensus       161 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~  235 (318)
                                .+.++..|..++.|.+..- .-...+..||+-|..     ..+..+.+-+-=.+.-+|..|+.+|.+++-
T Consensus       448 ----------kEraLe~LC~fIEDcey~~-I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~l  516 (898)
T COG5240         448 ----------KERALEVLCTFIEDCEYHQ-ITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFAL  516 (898)
T ss_pred             ----------HHHHHHHHHHHHhhcchhH-HHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence                      1345677777777766541 122233444443321     222333332222466788899999977652


Q ss_pred             -------c-chHHHHHHHHhccCCCHHHHHHHHHHHhccCChh
Q 021051          236 -------K-AASAALSDVLRNVNEHPMVRHEAAEALGSIADDQ  270 (318)
Q Consensus       236 -------~-~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~  270 (318)
                             + .+...|...+.|.  |.+||..|.-+|..+...+
T Consensus       517 n~~d~~~~~sv~~~lkRclnD~--DdeVRdrAsf~l~~~~~~d  557 (898)
T COG5240         517 NISDVVSPQSVENALKRCLNDQ--DDEVRDRASFLLRNMRLSD  557 (898)
T ss_pred             CccccccHHHHHHHHHHHhhcc--cHHHHHHHHHHHHhhhhhh
Confidence                   1 2344555666666  7889999888888887544

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.00047  Score=64.92  Aligned_cols=258  Identities=12%  Similarity=0.116  Sum_probs=142.9

Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHhccCCCChHHH----HHHhccCCCHHHHHHHHHHHhccC------CCCcHHHHHHhhh
Q 021051           21 LCDRLVDPTQPISERFRALFSLRNLKGPGPRDA----LIRATKDSSNLLAHEAAFALGQMQ------DAEAIPALEAVLN   90 (318)
Q Consensus        21 L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~----L~~~l~d~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~   90 (318)
                      +..-|.+|+.  .+|-..++.|.++..++.++.    +...|.+++.+||..|+.+++.+-      .+++.+.+..+|.
T Consensus       104 ~RkDLQHPNE--yiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~  181 (948)
T KOG1058|consen  104 YRKDLQHPNE--YIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLL  181 (948)
T ss_pred             HhhhccCchH--hhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHH
Confidence            3455788876  999999999999999765544    455678999999999999887653      3467777778887


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhcc--CCCHHHHHHHHHHHHHHHhhhccCcc--------ccccccCCCC
Q 021051           91 DFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVS--DPAQEVRETCELALERIEKLKASGSD--------GSSMTERSPF  160 (318)
Q Consensus        91 ~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~--d~~~~vr~~a~~aL~~~~~~~~~~~~--------~~~~l~~~~~  160 (318)
                      . +.||..++.|+-.|-....+.++..|.....+  +-++.+....++-+....   +..+.        +-..|..+..
T Consensus       182 ~-e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~---~~~p~~~~~~i~~i~~lL~stss  257 (948)
T KOG1058|consen  182 T-EQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVC---LANPAEKARYIRCIYNLLSSTSS  257 (948)
T ss_pred             h-ccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHH---hcCHHHhhHHHHHHHHHHhcCCc
Confidence            4 78999999999888776655544444442221  112333333333333222   00000        0001110000


Q ss_pred             cccC-CCCCC----CC----CccHHHHHHHHcCC-CcChHHHHHHHHHHHhCC--C----hhHHHHHHHHhCCCCHHHHH
Q 021051          161 MSVD-PAAPA----SS----CSSVDMLREVLLGE-EKGMYERYAALFALRNHG--G----DEAVSAIIDSLGATSALLKH  224 (318)
Q Consensus       161 ~~~~-~~~~~----~~----~~~~~~L~~~l~~~-~~~~~~r~~a~~~L~~~~--~----~~~~~~l~~~l~d~~~~vr~  224 (318)
                      .... .+..+    .+    +.+...++.++.+. +..  ++...+.-|..+.  +    .+.+-.++..++.++-++|.
T Consensus       258 aV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnn--vklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~  335 (948)
T KOG1058|consen  258 AVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNN--VKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRS  335 (948)
T ss_pred             hhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcc--hhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHH
Confidence            0000 01000    01    22344555555322 222  2333344444333  2    23334455677888999999


Q ss_pred             HHHHHHhccCCc----chHHHHHHHHhcc-----CCCHHHHHHHHHHHhccC------ChhhHHHHHHhhcCCCHHH
Q 021051          225 EVAYVLGQLQNK----AASAALSDVLRNV-----NEHPMVRHEAAEALGSIA------DDQSIGLLKEFAKDPEPIV  286 (318)
Q Consensus       225 ~a~~~L~~~~~~----~~~~~L~~~l~~~-----~~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~~~~~~v  286 (318)
                      .++...-.+-..    +.+..|..-+.+.     .++..-|...++++....      ....++.|.+.+.|.++.-
T Consensus       336 Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~a  412 (948)
T KOG1058|consen  336 KTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAA  412 (948)
T ss_pred             HHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHH
Confidence            888777665443    3344444433221     123455776666665543      1346788888877766543

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.00031  Score=66.13  Aligned_cols=247  Identities=19%  Similarity=0.172  Sum_probs=161.3

Q ss_pred             CCCCHHHHHHHHHHHhccC--------CCC----hHHHHHHhccCCCHHHHHHHHHHHhccCCC-----------CcHHH
Q 021051           28 PTQPISERFRALFSLRNLK--------GPG----PRDALIRATKDSSNLLAHEAAFALGQMQDA-----------EAIPA   84 (318)
Q Consensus        28 ~~~~~~~r~~A~~~l~~~~--------~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~   84 (318)
                      .+++..+|..|.++|...-        .+.    .+..+.+.-..++..++.+|+.+|.++-..           .....
T Consensus       184 ~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfai  263 (859)
T KOG1241|consen  184 EETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAI  263 (859)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333488988888875531        111    233344455778888999999888775421           12223


Q ss_pred             HHHhhhcCCCCHHHHHHHHHHHHhcCC-----------------C------------CcHHHHHhhhcc------CCCHH
Q 021051           85 LEAVLNDFSLHPIVRHEAAEALGAIGL-----------------E------------SNIPLLKNSLVS------DPAQE  129 (318)
Q Consensus        85 L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------------~------------~~~~~L~~~l~~------d~~~~  129 (318)
                      -+..++  +++..|...+++-=+.+.+                 +            ...|.|.+.|.+      ++++.
T Consensus       264 tl~amk--s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn  341 (859)
T KOG1241|consen  264 TLAAMK--SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN  341 (859)
T ss_pred             HHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence            334444  5667776666664443221                 1            356777775654      23567


Q ss_pred             HHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----
Q 021051          130 VRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----  204 (318)
Q Consensus       130 vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----  204 (318)
                      .-++|..+|.-+..          +.++.-           -+..++.+.+-++++++..  |.+|+.++|.+-+     
T Consensus       342 p~kAAg~CL~l~A~----------~~~D~I-----------v~~Vl~Fiee~i~~pdwr~--reaavmAFGSIl~gp~~~  398 (859)
T KOG1241|consen  342 PAKAAGVCLMLFAQ----------CVGDDI-----------VPHVLPFIEENIQNPDWRN--REAAVMAFGSILEGPEPD  398 (859)
T ss_pred             HHHHHHHHHHHHHH----------Hhcccc-----------hhhhHHHHHHhcCCcchhh--hhHHHHHHHhhhcCCchh
Confidence            77788777776651          111000           0235666777778888886  9999999998732     


Q ss_pred             ------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC------------cchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051          205 ------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN------------KAASAALSDVLRNVNEHPMVRHEAAEALGSI  266 (318)
Q Consensus       205 ------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~  266 (318)
                            .++++.+++++.|+.-.+|..+.+.||++.+            ...++.+++.+.|   .|.+-.++++++-.+
T Consensus       399 ~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D---ePrva~N~CWAf~~L  475 (859)
T KOG1241|consen  399 KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND---EPRVASNVCWAFISL  475 (859)
T ss_pred             hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh---CchHHHHHHHHHHHH
Confidence                  4788999999999999999999999999864            2345667777766   589999999988776


Q ss_pred             CC-------------------hhhHHHHHHhhc--C-CCHHHHHHHHHHHHhchhhhc
Q 021051          267 AD-------------------DQSIGLLKEFAK--D-PEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       267 ~~-------------------~~~~~~L~~~l~--~-~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      .+                   +..+..|++.-+  | .+...|.+|-.||..+-....
T Consensus       476 aea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st  533 (859)
T KOG1241|consen  476 AEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST  533 (859)
T ss_pred             HHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence            51                   112344444322  2 457789999999999877755

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.00054  Score=64.76  Aligned_cols=90  Identities=22%  Similarity=0.253  Sum_probs=72.2

Q ss_pred             hHHHHHHhccCCCHHHHHHHHHHHhccCCCCc----HHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------CCCcHHH
Q 021051           50 PRDALIRATKDSSNLLAHEAAFALGQMQDAEA----IPALEAVLNDFSLHPIVRHEAAEALGAIG--------LESNIPL  117 (318)
Q Consensus        50 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--------~~~~~~~  117 (318)
                      ++..+.+-..|++|.+|..|++.+|.++.+..    ...|...++  |.++.+|..+.-...++.        +....+.
T Consensus        87 avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~--d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~  164 (734)
T KOG1061|consen   87 AVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLK--DDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDA  164 (734)
T ss_pred             hhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHhhcCChhhccccchhHH
Confidence            34444444578899999999999999987655    455666777  899999999999888765        3457888


Q ss_pred             HHhhhccCCCHHHHHHHHHHHHHHH
Q 021051          118 LKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus       118 L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      |.. +..|++|.|..+|..+|..+.
T Consensus       165 L~~-ll~D~~p~VVAnAlaaL~eI~  188 (734)
T KOG1061|consen  165 LKD-LLSDSNPMVVANALAALSEIH  188 (734)
T ss_pred             HHH-HhcCCCchHHHHHHHHHHHHH
Confidence            888 667999999999999999987

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.89  E-value=0.00039  Score=63.59  Aligned_cols=256  Identities=14%  Similarity=0.073  Sum_probs=161.7

Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccCCCH-HHHHHHHHHHhccCCCCcHHHH------
Q 021051           21 LCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKDSSN-LLAHEAAFALGQMQDAEAIPAL------   85 (318)
Q Consensus        21 L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~~~~~~~L------   85 (318)
                      .++.|++++|  ..-..|...++.+..        |+....+.....+..| .++..++.++|.+........|      
T Consensus        99 al~aL~s~ep--r~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~  176 (858)
T COG5215          99 ALRALKSPEP--RFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNV  176 (858)
T ss_pred             HHHHhcCCcc--HHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhH
Confidence            5678999998  777788888777644        4566666666666654 6788888888887753332222      


Q ss_pred             ------HHhhhcCCCCHHHHHHHHHHHHh--------cCCCC----cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc
Q 021051           86 ------EAVLNDFSLHPIVRHEAAEALGA--------IGLES----NIPLLKNSLVSDPAQEVRETCELALERIEKLKAS  147 (318)
Q Consensus        86 ------~~~l~~~~~~~~vR~~a~~~L~~--------~~~~~----~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~  147 (318)
                            ...++ .+++..+|..++.+|..        +..+.    ......+ ..+.++.++..++..+|.++.- +..
T Consensus       177 il~aiv~ga~k-~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvce-atq~~d~e~q~aafgCl~kim~-LyY  253 (858)
T COG5215         177 ILFAIVMGALK-NETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCE-ATQGNDEELQHAAFGCLNKIMM-LYY  253 (858)
T ss_pred             HHHHHHHhhcc-cCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeeh-hccCCcHHHHHHHHHHHHHHHH-HHH
Confidence                  22233 37889999999999865        22222    2333444 5677899999999999998861 100


Q ss_pred             CccccccccCCCCcccCCCCCCCCCcc-HHHHHHHHcCCCcChHHHHHHHHHHHhCC-----------------------
Q 021051          148 GSDGSSMTERSPFMSVDPAAPASSCSS-VDMLREVLLGEEKGMYERYAALFALRNHG-----------------------  203 (318)
Q Consensus       148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~L~~~l~~~~~~~~~r~~a~~~L~~~~-----------------------  203 (318)
                      .          .+...      . +++ .......+++.++.+  ...+++--..++                       
T Consensus       254 ~----------fm~~y------m-E~aL~alt~~~mks~nd~v--a~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f  314 (858)
T COG5215         254 K----------FMQSY------M-ENALAALTGRFMKSQNDEV--AIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF  314 (858)
T ss_pred             H----------HHHHH------H-HHHHHHHHHHHhcCcchHH--HHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch
Confidence            0          00000      0 011 222334445555543  444443321111                       


Q ss_pred             ----ChhHHHHHHHHhC-------CCCHHHHHHHHHHHhc---cCCcc----hHHHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051          204 ----GDEAVSAIIDSLG-------ATSALLKHEVAYVLGQ---LQNKA----ASAALSDVLRNVNEHPMVRHEAAEALGS  265 (318)
Q Consensus       204 ----~~~~~~~l~~~l~-------d~~~~vr~~a~~~L~~---~~~~~----~~~~L~~~l~~~~~~~~vr~~a~~aL~~  265 (318)
                          ..+.+|.|.++|.       +++|.+...|..+|--   .+...    ++.++.+-+.++  +|.-|.+|+-++|.
T Consensus       315 a~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~--~w~nreaavmAfGS  392 (858)
T COG5215         315 ARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSE--SWANREAAVMAFGS  392 (858)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCc--hhhhHHHHHHHhhh
Confidence                1256788888773       2467777777666643   33333    344444455554  89999999999999


Q ss_pred             cCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          266 IAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       266 ~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      +-+           ++++|.+.....|+.-.|+....|+++.|..+-+
T Consensus       393 vm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va  440 (858)
T COG5215         393 VMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA  440 (858)
T ss_pred             hhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH
Confidence            732           3578888888888889999999999999877655

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.87  E-value=0.0019  Score=62.00  Aligned_cols=208  Identities=16%  Similarity=0.092  Sum_probs=137.8

Q ss_pred             HHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHH-HHHHHHHHHHHHHh
Q 021051           65 LAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQE-VRETCELALERIEK  143 (318)
Q Consensus        65 vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~-vr~~a~~aL~~~~~  143 (318)
                      .-...++.|..+.. ..+..+.+-+.  ......|..-+.+|...|.+.++..+.+.+.+..-+. .....+..+.... 
T Consensus       312 ~f~~lv~~lR~~~~-e~l~~l~~~~~--~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~-  387 (574)
T smart00638      312 KFLRLVRLLRTLSE-EQLEQLWRQLY--EKKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTA-  387 (574)
T ss_pred             HHHHHHHHHHhCCH-HHHHHHHHHHH--hCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-
Confidence            33444555555554 44555555554  3117889999999999999999999988555443222 2222222222221 


Q ss_pred             hhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCc--ChHHHHHHHHHHHhCCC--------------hhH
Q 021051          144 LKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEK--GMYERYAALFALRNHGG--------------DEA  207 (318)
Q Consensus       144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~--~~~~r~~a~~~L~~~~~--------------~~~  207 (318)
                                         ..|     +++.+..+..++.++..  ...+|..++-+++.+-.              ...
T Consensus       388 -------------------~~P-----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~  443 (574)
T smart00638      388 -------------------RYP-----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEEL  443 (574)
T ss_pred             -------------------hcC-----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHH
Confidence                               011     24578888888875432  22357777777775521              244


Q ss_pred             HHHHHHHh----CCCCHHHHHHHHHHHhccCCcchHHHHHHHHh-ccCCCHHHHHHHHHHHhccC---ChhhHHHHHHhh
Q 021051          208 VSAIIDSL----GATSALLKHEVAYVLGQLQNKAASAALSDVLR-NVNEHPMVRHEAAEALGSIA---DDQSIGLLKEFA  279 (318)
Q Consensus       208 ~~~l~~~l----~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~-~~~~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l  279 (318)
                      ++.+.+.+    +..+...+...+.+||+++.+..++.|...+. +.+.+..+|..|++||.++.   .....+.|...+
T Consensus       444 ~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~  523 (574)
T smart00638      444 LKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIY  523 (574)
T ss_pred             HHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            55555544    34566678889999999999999999999997 44446789999999999873   445778888876


Q ss_pred             cC--CCHHHHHHHHHHHHhchhh
Q 021051          280 KD--PEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       280 ~~--~~~~vr~~a~~aL~~l~~~  300 (318)
                      .+  .+++||.+|..+|-...-.
T Consensus       524 ~n~~e~~EvRiaA~~~lm~t~P~  546 (574)
T smart00638      524 LNRAEPPEVRMAAVLVLMETKPS  546 (574)
T ss_pred             cCCCCChHHHHHHHHHHHhcCCC
Confidence            54  6799999999998877533

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.00018  Score=67.57  Aligned_cols=218  Identities=16%  Similarity=0.165  Sum_probs=132.0

Q ss_pred             HHHhccCCCHHHHHHHHHHHhccCCC----CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC------CCCcHHHHHhhhc
Q 021051           54 LIRATKDSSNLLAHEAAFALGQMQDA----EAIPALEAVLNDFSLHPIVRHEAAEALGAIG------LESNIPLLKNSLV  123 (318)
Q Consensus        54 L~~~l~d~~~~vr~~a~~aL~~~~~~----~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~------~~~~~~~L~~~l~  123 (318)
                      +.+-|.+|+.++|-..++-|.++..+    +.+|.+..+|.  +.++.||+.|+-++..+-      -+++-+.+...+.
T Consensus       104 ~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~Iracle--HrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~  181 (948)
T KOG1058|consen  104 YRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLE--HRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLL  181 (948)
T ss_pred             HhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHh--CcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHH
Confidence            33455788999999999999998865    45677788888  999999999999887653      3566677777777


Q ss_pred             cCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC-CCcChHHHHHHHHHHHhC
Q 021051          124 SDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG-EEKGMYERYAALFALRNH  202 (318)
Q Consensus       124 ~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~L~~~  202 (318)
                      .+.||.-.+.|...|.....                            +.++..|..-+.+ ++.........++.+.+.
T Consensus       182 ~e~DpsCkRNAFi~L~~~D~----------------------------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv  233 (948)
T KOG1058|consen  182 TEQDPSCKRNAFLMLFTTDP----------------------------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKV  233 (948)
T ss_pred             hccCchhHHHHHHHHHhcCH----------------------------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHH
Confidence            88899999999988876540                            1112222111110 111111233444444443


Q ss_pred             CC------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-c----chHHHHHHHHhccCCCHHHHHHHHHHHhccC--Ch
Q 021051          203 GG------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN-K----AASAALSDVLRNVNEHPMVRHEAAEALGSIA--DD  269 (318)
Q Consensus       203 ~~------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-~----~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~  269 (318)
                      +.      ...+..+.++|.++++.|+.+|+..|-.+.. +    .+...+++++.+.+ |-+++.=-..-|..+.  +.
T Consensus       234 ~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kes-dnnvklIvldrl~~l~~~~~  312 (948)
T KOG1058|consen  234 CLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKES-DNNVKLIVLDRLSELKALHE  312 (948)
T ss_pred             HhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhcc-CcchhhhhHHHHHHHhhhhH
Confidence            22      2456667778888888888888888877654 2    24456666665432 4455544444444443  22


Q ss_pred             hhHHH----HHHhhcCCCHHHHHHHHH-HHHhchhhhc
Q 021051          270 QSIGL----LKEFAKDPEPIVSQSCEV-ALSMLEYEQL  302 (318)
Q Consensus       270 ~~~~~----L~~~l~~~~~~vr~~a~~-aL~~l~~~~~  302 (318)
                      .+++-    +..++..++-+||..+.. ++.....++-
T Consensus       313 ~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv  350 (948)
T KOG1058|consen  313 KILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV  350 (948)
T ss_pred             HHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH
Confidence            22222    234566777777755543 4444444433

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.82  E-value=5.1e-05  Score=48.15  Aligned_cols=45  Identities=33%  Similarity=0.395  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHhccCC----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051          253 PMVRHEAAEALGSIAD----------DQSIGLLKEFAKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       253 ~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l  297 (318)
                      |.||.+|+++||.+..          ++.++.|..+++|+++.||..|++||++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4566666666665541          24566677777777777777777777654

...

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.82  E-value=0.00075  Score=66.71  Aligned_cols=197  Identities=17%  Similarity=0.148  Sum_probs=132.5

Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----C----CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcccc
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALGAIG----L----ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGS  152 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----~----~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~  152 (318)
                      .++.+...+.. -.....+..|++.|..+.    +    ..++|.+.. +..|+.+.||..|+.+|.++-.   ...   
T Consensus       423 ~vs~lts~IR~-lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~-l~~Ds~a~Vra~Al~Tlt~~L~---~Vr---  494 (1431)
T KOG1240|consen  423 FVSVLTSCIRA-LKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVH-LLMDSEADVRATALETLTELLA---LVR---  494 (1431)
T ss_pred             eHHHHHHHHHh-hhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHH-HhcCchHHHHHHHHHHHHHHHh---hcc---
Confidence            35666666662 356677888888887654    2    246788888 7799999999999999988751   000   


Q ss_pred             ccccCCCCcccCCCCCCC-CCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC---------------------------
Q 021051          153 SMTERSPFMSVDPAAPAS-SCSSVDMLREVLLGEEKGMYERYAALFALRNHGG---------------------------  204 (318)
Q Consensus       153 ~~l~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~---------------------------  204 (318)
                               ...+..+.. .+-.+|.|..++.|.+... +|.+-+..|+.+..                           
T Consensus       495 ---------~~~~~daniF~eYlfP~L~~l~~d~~~~~-vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~  564 (1431)
T KOG1240|consen  495 ---------DIPPSDANIFPEYLFPHLNHLLNDSSAQI-VRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAP  564 (1431)
T ss_pred             ---------CCCcccchhhHhhhhhhhHhhhccCccce-ehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence                     000000000 1335677777777754443 57766665554421                           


Q ss_pred             ------------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC--------CcchHHHHHHHHhccCCCHHHHHHHHHHHh
Q 021051          205 ------------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ--------NKAASAALSDVLRNVNEHPMVRHEAAEALG  264 (318)
Q Consensus       205 ------------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~  264 (318)
                                  +.....+..++.|+++-||...++.++.+.        +.-.+++|..+|+|.  ||.+|.+-.+.+.
T Consensus       565 ~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDk--Dw~LR~aFfdsI~  642 (1431)
T KOG1240|consen  565 EQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDK--DWRLRGAFFDSIV  642 (1431)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCc--cHHHHHHHHhhcc
Confidence                        012233445678888999998888877542        234789999999997  9999999999887


Q ss_pred             ccC--------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051          265 SIA--------DDQSIGLLKEFAKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       265 ~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l  297 (318)
                      .+.        +.-.+|+|.+.+.|.++.|-..|+.+|.-+
T Consensus       643 gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~L  683 (1431)
T KOG1240|consen  643 GVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSIL  683 (1431)
T ss_pred             ceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHH
Confidence            432        234788888899999998988777777644

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.79  E-value=0.0007  Score=62.56  Aligned_cols=193  Identities=15%  Similarity=0.102  Sum_probs=124.6

Q ss_pred             HHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccc
Q 021051           85 LEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSS  153 (318)
Q Consensus        85 L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~  153 (318)
                      |.+.+.  +.+|.+-...+.++..+-           -.+.+|.|.. .+.+++..|..+.+.-++.++  ..+.+.   
T Consensus       651 LyE~lg--e~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltP-ILrnkh~Kv~~nti~lvg~I~--~~~pey---  722 (975)
T COG5181         651 LYENLG--EDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTP-ILRNKHQKVVANTIALVGTIC--MNSPEY---  722 (975)
T ss_pred             HHHhcC--cccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccH-hhhhhhHHHhhhHHHHHHHHH--hcCccc---
Confidence            334444  556666655555555432           1245666666 446677777777777777776  111110   


Q ss_pred             cccCCCCcccCCCCCCCCCcc---HHHHHHHHcCCCcChHHHHHHHHHHHhC----CChhHHHHHHHHhCCCCHHHHHH-
Q 021051          154 MTERSPFMSVDPAAPASSCSS---VDMLREVLLGEEKGMYERYAALFALRNH----GGDEAVSAIIDSLGATSALLKHE-  225 (318)
Q Consensus       154 ~l~~~~~~~~~~~~~~~~~~~---~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~~~~~~~~l~~~l~d~~~~vr~~-  225 (318)
                                     .+.++.   .=.|++.|.+-+.++  |++|...+|.+    |..+.+..|.+.|+..+-..|.. 
T Consensus       723 ---------------i~~rEWMRIcfeLvd~Lks~nKei--RR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~Rvct  785 (975)
T COG5181         723 ---------------IGVREWMRICFELVDSLKSWNKEI--RRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCT  785 (975)
T ss_pred             ---------------CCHHHHHHHHHHHHHHHHHhhHHH--HHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhh
Confidence                           000111   124666677777776  99999888876    56778888888887655555543 


Q ss_pred             --HHHHHhccCCc-chHHHHHHHHhccCCCHHHHHHHHHHHhcc----CCh------hhHHHHHHhhcCCCHHHHHHHHH
Q 021051          226 --VAYVLGQLQNK-AASAALSDVLRNVNEHPMVRHEAAEALGSI----ADD------QSIGLLKEFAKDPEPIVSQSCEV  292 (318)
Q Consensus       226 --a~~~L~~~~~~-~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~----~~~------~~~~~L~~~l~~~~~~vr~~a~~  292 (318)
                        |+...++.+.+ .++|.|+.-...+  +..|+...++++..+    |..      ...|.|..++.|.++.-|+.|..
T Consensus       786 svaI~iVae~cgpfsVlP~lm~dY~TP--e~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~n  863 (975)
T COG5181         786 SVAISIVAEYCGPFSVLPTLMSDYETP--EANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMN  863 (975)
T ss_pred             hhhhhhhHhhcCchhhHHHHHhcccCc--hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHH
Confidence              44555565544 6788888877776  678888888887764    321      24677788899999999999999


Q ss_pred             HHHhchhhhcch
Q 021051          293 ALSMLEYEQLEK  304 (318)
Q Consensus       293 aL~~l~~~~~~~  304 (318)
                      .+..+-.+.++-
T Consensus       864 vI~Hl~Lnc~gt  875 (975)
T COG5181         864 VIRHLVLNCPGT  875 (975)
T ss_pred             HHHHHhcCCCCc
Confidence            988887666543

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.77  E-value=0.008  Score=56.67  Aligned_cols=112  Identities=20%  Similarity=0.207  Sum_probs=80.8

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC----------ChHHHHHHhccCCCHHHHHHHHHHHhccCCC------C
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGP----------GPRDALIRATKDSSNLLAHEAAFALGQMQDA------E   80 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~   80 (318)
                      +...+++...+++.  .||++.+..++.+.+.          .....+...+.|..|.||..|+.+|.++...      .
T Consensus        86 ~f~hlLRg~Eskdk--~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~  163 (892)
T KOG2025|consen   86 TFYHLLRGTESKDK--KVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECP  163 (892)
T ss_pred             HHHHHHhcccCcch--hHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCccc
Confidence            44445666677776  8999999998887651          2344455566788999999999999888732      4


Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHH
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETC  134 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a  134 (318)
                      +...+..++.+ |+++.||+.++..+..  ++...|.+.+ -..|-+..+|+.+
T Consensus       164 v~n~l~~liqn-DpS~EVRRaaLsnI~v--dnsTlp~Ive-RarDV~~anRrlv  213 (892)
T KOG2025|consen  164 VVNLLKDLIQN-DPSDEVRRAALSNISV--DNSTLPCIVE-RARDVSGANRRLV  213 (892)
T ss_pred             HHHHHHHHHhc-CCcHHHHHHHHHhhcc--CcccchhHHH-HhhhhhHHHHHHH
Confidence            57778888885 8999999998877763  4567788887 3466666666544

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=0.00068  Score=64.31  Aligned_cols=88  Identities=18%  Similarity=0.214  Sum_probs=60.3

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHhccCCCC----cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--CCCc----HHHHHhh
Q 021051           52 DALIRATKDSSNLLAHEAAFALGQMQDAE----AIPALEAVLNDFSLHPIVRHEAAEALGAIG--LESN----IPLLKNS  121 (318)
Q Consensus        52 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--~~~~----~~~L~~~  121 (318)
                      ..|.+=|++.+-.+.-.|+.+||.+..++    ..|.+.++++  +.++.+|+.|+.++-++-  .|+.    ++...+ 
T Consensus       110 NslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~--~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~-  186 (866)
T KOG1062|consen  110 NSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQ--HRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRK-  186 (866)
T ss_pred             HHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHh--CCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHH-
Confidence            33444556778888999999999988654    4566677888  799999999998887653  3443    444555 


Q ss_pred             hccCCCHHHHHHHHHHHHHHH
Q 021051          122 LVSDPAQEVRETCELALERIE  142 (318)
Q Consensus       122 l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      ++.+++..|-.++..-+-.+.
T Consensus       187 lL~ek~hGVL~~~l~l~~e~c  207 (866)
T KOG1062|consen  187 LLCEKHHGVLIAGLHLITELC  207 (866)
T ss_pred             HHhhcCCceeeeHHHHHHHHH
Confidence            456777666665555544443

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.0007  Score=62.01  Aligned_cols=157  Identities=18%  Similarity=0.144  Sum_probs=96.0

Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHH--hc--CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcccccccc
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALG--AI--GLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTE  156 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~--~~--~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~  156 (318)
                      +-+.+.+++.  +.++.+|.+.+.+++  ..  ++..++..|.....+|.+..||++|+.+|+-+.              
T Consensus       517 add~I~ell~--d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc--------------  580 (926)
T COG5116         517 ADDYINELLY--DKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVC--------------  580 (926)
T ss_pred             HHHHHHHHhc--CchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeE--------------
Confidence            4456667777  777777776666554  22  344566666664467778888888888877554              


Q ss_pred             CCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----CChhHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 021051          157 RSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----GGDEAVSAIIDSLGATSALLKHEVAYVLGQ  232 (318)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~  232 (318)
                         +.         +...+...+++|.++... +||....-+||-.    |...++..|..+..|+..-||..|+.+++.
T Consensus       581 ---~~---------D~~~lv~tvelLs~shN~-hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~m  647 (926)
T COG5116         581 ---CD---------DRDLLVGTVELLSESHNF-HVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGM  647 (926)
T ss_pred             ---ec---------CcchhhHHHHHhhhccch-hhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence               11         123566666666554443 4677777777654    445666677777778888888888777776


Q ss_pred             cC---Cc-------chHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051          233 LQ---NK-------AASAALSDVLRNVNEHPMVRHEAAEALGSI  266 (318)
Q Consensus       233 ~~---~~-------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~  266 (318)
                      +-   ++       .....+.+.+.+..++..++..|+.+=|-+
T Consensus       648 Il~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~glaklGA~laqGi~  691 (926)
T COG5116         648 ILMQCNPELNPNVKRIIKKFNRVIVDKHESGLAKLGAVLAQGIS  691 (926)
T ss_pred             HHhhcCcccChhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhh
Confidence            52   22       233444455555444556666666554443

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.0069  Score=57.64  Aligned_cols=121  Identities=18%  Similarity=0.186  Sum_probs=79.3

Q ss_pred             HHHHHHHHcCCCcChHHHHHHHHHHHhCC------ChhHHHHHHHHhCC-CCHHHHHHHHHHHhccCC-----cchHHHH
Q 021051          175 VDMLREVLLGEEKGMYERYAALFALRNHG------GDEAVSAIIDSLGA-TSALLKHEVAYVLGQLQN-----KAASAAL  242 (318)
Q Consensus       175 ~~~L~~~l~~~~~~~~~r~~a~~~L~~~~------~~~~~~~l~~~l~d-~~~~vr~~a~~~L~~~~~-----~~~~~~L  242 (318)
                      .+.|-..|++ +..+..+.+.++++-.+-      ....+.-|.+.+.| ....+-...+..||+=++     ...+-.+
T Consensus       393 m~FL~~~Lr~-eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~i  471 (865)
T KOG1078|consen  393 MNFLSNMLRE-EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFI  471 (865)
T ss_pred             HHHHHHHHHh-ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHH
Confidence            4455566655 333334666666665431      12344445555544 345666677777877654     2345555


Q ss_pred             HHHHhccCCCHHHHHHHHHHHhccC--C----hhhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051          243 SDVLRNVNEHPMVRHEAAEALGSIA--D----DQSIGLLKEFAKDPEPIVSQSCEVALSMLE  298 (318)
Q Consensus       243 ~~~l~~~~~~~~vr~~a~~aL~~~~--~----~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~  298 (318)
                      ...+-=.  +..||.+|+.+|.++|  +    +...-.|.+++.|.+..||..|..+|..+.
T Consensus       472 yNRviLE--n~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  472 YNRVILE--NAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhhhhhh--hhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            5555433  7899999999999998  2    235556667999999999999999999887

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.72  E-value=0.0026  Score=61.56  Aligned_cols=189  Identities=18%  Similarity=0.200  Sum_probs=118.9

Q ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcccccc
Q 021051           82 IPALEAVLNDFSLHPIVRHEAAEALGAIGL-------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSM  154 (318)
Q Consensus        82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~  154 (318)
                      ...|..-+.+...+..+|..|.-.||.+|.       .+....+++ ..+.+++.|+.+|..|||.+.     .+.    
T Consensus       819 a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iie-af~sp~edvksAAs~ALGsl~-----vgn----  888 (1233)
T KOG1824|consen  819 ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIE-AFNSPSEDVKSAASYALGSLA-----VGN----  888 (1233)
T ss_pred             HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHH-HcCCChHHHHHHHHHHhhhhh-----cCc----
Confidence            333444444345677889999999999873       234556777 558999999999999999887     000    


Q ss_pred             ccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----CC---hhHHHH----HHHHhCCCCHHHH
Q 021051          155 TERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----GG---DEAVSA----IIDSLGATSALLK  223 (318)
Q Consensus       155 l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~~---~~~~~~----l~~~l~d~~~~vr  223 (318)
                                      -+..+|.+++.+......   ++--+-.|...    ..   ...++.    |.+.........|
T Consensus       889 ----------------l~~yLpfil~qi~sqpk~---QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR  949 (1233)
T KOG1824|consen  889 ----------------LPKYLPFILEQIESQPKR---QYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTR  949 (1233)
T ss_pred             ----------------hHhHHHHHHHHHhcchHh---HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhH
Confidence                            134677777777443322   22222222221    11   122222    2332334455667


Q ss_pred             HHHHHHHhcc---CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC--h--------hhHHHHHHhhcCCCHHHHHHH
Q 021051          224 HEVAYVLGQL---QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD--D--------QSIGLLKEFAKDPEPIVSQSC  290 (318)
Q Consensus       224 ~~a~~~L~~~---~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--~--------~~~~~L~~~l~~~~~~vr~~a  290 (318)
                      .-.+.+||++   .++..+|.|...+.++  .+..|..++.++...-.  +        +.+.-...+++|++..||+.|
T Consensus       950 ~vvAECLGkL~l~epesLlpkL~~~~~S~--a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~Vrrva 1027 (1233)
T KOG1824|consen  950 NVVAECLGKLVLIEPESLLPKLKLLLRSE--ASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVA 1027 (1233)
T ss_pred             HHHHHHhhhHHhCChHHHHHHHHHHhcCC--CcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            7777777775   4557788888888876  78888888877766421  1        233345556788999999999


Q ss_pred             HHHHHhchhhh
Q 021051          291 EVALSMLEYEQ  301 (318)
Q Consensus       291 ~~aL~~l~~~~  301 (318)
                      ..++...-++.
T Consensus      1028 Lvv~nSaahNK 1038 (1233)
T KOG1824|consen 1028 LVVLNSAAHNK 1038 (1233)
T ss_pred             HHHHHHHHccC
Confidence            99888765543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.66  E-value=9.8e-05  Score=46.82  Aligned_cols=44  Identities=32%  Similarity=0.354  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051           32 ISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQ   75 (318)
Q Consensus        32 ~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~   75 (318)
                      |.+|..|++.|+.+..          ++.++.|...|+|+++.||..|+++||+
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            3566666666665443          2344445555555555555555555554

...

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.65  E-value=0.0015  Score=62.89  Aligned_cols=124  Identities=17%  Similarity=0.196  Sum_probs=88.0

Q ss_pred             ChhhHHHHHHh-hcCCCCCHHHHHHHHHHH-hccCC----CChHHHHHHhccCCCHHHHHHHHHHHhccC---CC---Cc
Q 021051           14 SPEMEKFLCDR-LVDPTQPISERFRALFSL-RNLKG----PGPRDALIRATKDSSNLLAHEAAFALGQMQ---DA---EA   81 (318)
Q Consensus        14 ~~~~~~~L~~~-L~~~~~~~~~r~~A~~~l-~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~~---~~   81 (318)
                      ....+..+... |.+.+.  ..|..|++.+ +.+..    +...+.+++...+.|..++...=.-|-.++   ..   .+
T Consensus        16 ~~~~~~~~~sg~l~s~n~--~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLa   93 (757)
T COG5096          16 NADSVAALSSGRLESSND--YKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLA   93 (757)
T ss_pred             cchHHhhhccccccccCh--HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            44456666666 777775  8888888776 44322    235566666667788888766544444333   22   24


Q ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCc----HHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           82 IPALEAVLNDFSLHPIVRHEAAEALGAIGLESN----IPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~----~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      +..+.+=++  |+++.+|..|++.++.++.+..    ++.+.+ +.+|+++.||+.|+.++..+=
T Consensus        94 vNti~kDl~--d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~-~l~d~~ayVRk~Aalav~kly  155 (757)
T COG5096          94 VNTIQKDLQ--DPNEEIRGFALRTLSLLRVKELLGNIIDPIKK-LLTDPHAYVRKTAALAVAKLY  155 (757)
T ss_pred             HHHHHhhcc--CCCHHHHHHHHHHHHhcChHHHHHHHHHHHHH-HccCCcHHHHHHHHHHHHHHH
Confidence            555666666  9999999999999999997664    556777 668999999999999999774

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.65  E-value=0.00053  Score=67.73  Aligned_cols=209  Identities=17%  Similarity=0.121  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHhccCC--------CChHHHHHHhccCCCHHHHHHHHHHHhccCC----------CC----cHHHHHHhhh
Q 021051           33 SERFRALFSLRNLKG--------PGPRDALIRATKDSSNLLAHEAAFALGQMQD----------AE----AIPALEAVLN   90 (318)
Q Consensus        33 ~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~----~~~~L~~~l~   90 (318)
                      ..+..|++.|..+..        ..+.|.+..++.|+...||..|+.+|.++-.          .-    ..|.|..++.
T Consensus       438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~  517 (1431)
T KOG1240|consen  438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLN  517 (1431)
T ss_pred             hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhc
Confidence            567888888777644        4678888888899999999999999876421          11    2455555555


Q ss_pred             cCC-CCHHHHHHHHHHHHhcC--------------------CCC------------------cHHHHHhhhccCCCHHHH
Q 021051           91 DFS-LHPIVRHEAAEALGAIG--------------------LES------------------NIPLLKNSLVSDPAQEVR  131 (318)
Q Consensus        91 ~~~-~~~~vR~~a~~~L~~~~--------------------~~~------------------~~~~L~~~l~~d~~~~vr  131 (318)
                        | ....||..-+..|+.+.                    ++.                  .++.....|..|+++-||
T Consensus       518 --d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vk  595 (1431)
T KOG1240|consen  518 --DSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVK  595 (1431)
T ss_pred             --cCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHH
Confidence              4 55677877666665432                    111                  123333336678889999


Q ss_pred             HHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----C----
Q 021051          132 ETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----G----  203 (318)
Q Consensus       132 ~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~----  203 (318)
                      ++....+..+.-          ++     ....     .+.-.++.|..+|.|.++..  |.+=.+.+.-+    |    
T Consensus       596 r~Lle~i~~LC~----------FF-----Gk~k-----sND~iLshLiTfLNDkDw~L--R~aFfdsI~gvsi~VG~rs~  653 (1431)
T KOG1240|consen  596 RALLESIIPLCV----------FF-----GKEK-----SNDVILSHLITFLNDKDWRL--RGAFFDSIVGVSIFVGWRSV  653 (1431)
T ss_pred             HHHHHHHHHHHH----------Hh-----hhcc-----cccchHHHHHHHhcCccHHH--HHHHHhhccceEEEEeeeeH
Confidence            999888877651          00     0000     01235888999998887764  77666666532    2    


Q ss_pred             ChhHHHHHHHHhCCCCHHHHHHHHHHHhccC------Ccc---hHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          204 GDEAVSAIIDSLGATSALLKHEVAYVLGQLQ------NKA---ASAALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       204 ~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~------~~~---~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                      .+..+|.|...|.|..+.|-..|+.+|.-+-      .+.   .++....++-.+  +..||++++-.+..+.
T Consensus       654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP--N~WIR~~~~~iI~~~~  724 (1431)
T KOG1240|consen  654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP--NLWIRRAVLGIIAAIA  724 (1431)
T ss_pred             HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc--hHHHHHHHHHHHHHHH
Confidence            2456677788889999999888888776432      222   233344455666  7888988877666653

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.62  E-value=0.0036  Score=58.88  Aligned_cols=173  Identities=21%  Similarity=0.116  Sum_probs=114.9

Q ss_pred             cCCCHHHHHHHHHHHhccCCC----------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-CC-----CcHHHHHhhh
Q 021051           59 KDSSNLLAHEAAFALGQMQDA----------EAIPALEAVLNDFSLHPIVRHEAAEALGAIG-LE-----SNIPLLKNSL  122 (318)
Q Consensus        59 ~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-~~-----~~~~~L~~~l  122 (318)
                      ..++..||...+..|..+.+.          .....+..-+.  |..|.||..|+.+|+++. ++     .+...+...+
T Consensus        95 Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~--Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~li  172 (892)
T KOG2025|consen   95 ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK--DREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLI  172 (892)
T ss_pred             cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh--ccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence            567889999999998776541          12445556666  899999999999999986 22     2456667767


Q ss_pred             ccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHH-HHHHHh
Q 021051          123 VSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAA-LFALRN  201 (318)
Q Consensus       123 ~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a-~~~L~~  201 (318)
                      .+||+++||+++...+..-                              ....|-+++..+|-+...  |..+ -..|-+
T Consensus       173 qnDpS~EVRRaaLsnI~vd------------------------------nsTlp~IveRarDV~~an--RrlvY~r~lpk  220 (892)
T KOG2025|consen  173 QNDPSDEVRRAALSNISVD------------------------------NSTLPCIVERARDVSGAN--RRLVYERCLPK  220 (892)
T ss_pred             hcCCcHHHHHHHHHhhccC------------------------------cccchhHHHHhhhhhHHH--HHHHHHHhhhh
Confidence            7999999999888766522                              235666777666665543  4433 233334


Q ss_pred             CCC-----hhHHHHHHHHhCCCCHHHHHHHHHHHhc--cCC-cchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051          202 HGG-----DEAVSAIIDSLGATSALLKHEVAYVLGQ--LQN-KAASAALSDVLRNVNEHPMVRHEAAEALGSI  266 (318)
Q Consensus       202 ~~~-----~~~~~~l~~~l~d~~~~vr~~a~~~L~~--~~~-~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~  266 (318)
                      +.-     ..-+..+...++|.+..++.++...+..  +.. ..-++.+++.+.-.+ +..|+..++++|-..
T Consensus       221 id~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsn-ss~vavk~lealf~~  292 (892)
T KOG2025|consen  221 IDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSN-SSEVAVKALEALFSG  292 (892)
T ss_pred             hhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhcccc-chHHHHHHHHHHHHH
Confidence            411     1233445557788888999888888865  221 233455555554332 568888899988773

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.62  E-value=0.0012  Score=63.80  Aligned_cols=222  Identities=18%  Similarity=0.170  Sum_probs=150.0

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccCCCHHHHHHHHHHHhccC-----------
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKDSSNLLAHEAAFALGQMQ-----------   77 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------   77 (318)
                      .++.+..+..|.+.  .+|...+-.......        +...+.++..++|.++.||....+.+....           
T Consensus       399 ilp~~~~lv~d~~~--~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~  476 (759)
T KOG0211|consen  399 ILPEVQVLVLDNAL--HVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV  476 (759)
T ss_pred             hhHHHHHHHhcccc--hHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence            45777777887776  777765555444321        356777777889999999999997554321           


Q ss_pred             CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCc
Q 021051           78 DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG--------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGS  149 (318)
Q Consensus        78 ~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~  149 (318)
                      ....+|.+..+..  +..+.+|.+.++.+-...        ++...+.+.. ...|....+|.+++..+..+.. .-+. 
T Consensus       477 s~slLp~i~el~~--d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~-~l~d~v~~Ir~~aa~~l~~l~~-~~G~-  551 (759)
T KOG0211|consen  477 SNSLLPAIVELAE--DLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRT-WLPDHVYSIREAAARNLPALVE-TFGS-  551 (759)
T ss_pred             hhhhhhhhhhhcc--chhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHh-hhhhhHHHHHHHHHHHhHHHHH-HhCc-
Confidence            1244677777777  668999999988775432        2223333333 3456667899999988887761 1110 


Q ss_pred             cccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----CC----hhHHHHHHHHhCCCCHH
Q 021051          150 DGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----GG----DEAVSAIIDSLGATSAL  221 (318)
Q Consensus       150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~~----~~~~~~l~~~l~d~~~~  221 (318)
                                    ..    .....++.++....+++.-  .|...+.++..+    |.    ...++.+..+..|+.++
T Consensus       552 --------------~w----~~~~~i~k~L~~~~q~~y~--~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~van  611 (759)
T KOG0211|consen  552 --------------EW----ARLEEIPKLLAMDLQDNYL--VRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVAN  611 (759)
T ss_pred             --------------ch----hHHHhhHHHHHHhcCcccc--hhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchh
Confidence                          00    0123466666666666444  488877776544    32    46778888888999999


Q ss_pred             HHHHHHHHHhccCC--------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          222 LKHEVAYVLGQLQN--------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       222 vr~~a~~~L~~~~~--------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                      ||..+++.|-.+..        +...|.+..+..|+  +.++|+.|..+.+.+.
T Consensus       612 VR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~--~~dvr~~a~~a~~~i~  663 (759)
T KOG0211|consen  612 VRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQ--ELDVRYRAILAFGSIE  663 (759)
T ss_pred             hhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCc--ccchhHHHHHHHHHHH
Confidence            99999999988753        45666666666766  8899999999998876

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.60  E-value=0.0042  Score=58.82  Aligned_cols=284  Identities=15%  Similarity=0.111  Sum_probs=179.6

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CC----hHHHHHHhccCCCHHHHHHHHHHHhcc---C--
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PG----PRDALIRATKDSSNLLAHEAAFALGQM---Q--   77 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~---~--   77 (318)
                      -+.....++..|+++.+  .+|..|+..++.+..       +.    .--.|.+.|...+|.+---.+.++..+   .  
T Consensus       797 lpqi~stiL~rLnnksa--~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm  874 (1172)
T KOG0213|consen  797 LPQICSTILWRLNNKSA--KVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGM  874 (1172)
T ss_pred             hHHHHHHHHHHhcCCCh--hHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccc
Confidence            45566677888999998  999999998877632       11    223455677788887764444444322   1  


Q ss_pred             ------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC--CcH---------HHHHhhhccCCCHHHHHHHHHHHHH
Q 021051           78 ------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE--SNI---------PLLKNSLVSDPAQEVRETCELALER  140 (318)
Q Consensus        78 ------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~--~~~---------~~L~~~l~~d~~~~vr~~a~~aL~~  140 (318)
                            ..+.+|.|..+|+  +....|...++..++.+++.  +.+         -.|.. +++.-+..+|+++..++|-
T Consensus       875 ~km~pPi~dllPrltPILk--nrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLle-lLkahkK~iRRaa~nTfG~  951 (1172)
T KOG0213|consen  875 TKMTPPIKDLLPRLTPILK--NRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLE-LLKAHKKEIRRAAVNTFGY  951 (1172)
T ss_pred             cccCCChhhhcccchHhhh--hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhH
Confidence                  2367899999999  78999999999999998742  211         12555 3455688999999999998


Q ss_pred             HHhhhccCccccc-cccC--------CCCcccCC---CCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----C-
Q 021051          141 IEKLKASGSDGSS-MTER--------SPFMSVDP---AAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----G-  203 (318)
Q Consensus       141 ~~~~~~~~~~~~~-~l~~--------~~~~~~~~---~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~-  203 (318)
                      +.. .-+...+.. .+.+        ....+..-   +..-+.-..+|.|..-..-++..  |+...++++..+    | 
T Consensus       952 Iak-aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~n--VQnGVLkalsf~Feyige 1028 (1172)
T KOG0213|consen  952 IAK-AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEAN--VQNGVLKALSFMFEYIGE 1028 (1172)
T ss_pred             HHH-hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhH--HHHhHHHHHHHHHHHHHH
Confidence            871 111111111 1110        00000000   00011345678888777776665  488777777644    2 


Q ss_pred             --C---hhHHHHHHHHhCCCCHHHHHHHHHHHhccC-------CcchHHHHHHHHhc--cCCCHHHHHHHHHHHhcc---
Q 021051          204 --G---DEAVSAIIDSLGATSALLKHEVAYVLGQLQ-------NKAASAALSDVLRN--VNEHPMVRHEAAEALGSI---  266 (318)
Q Consensus       204 --~---~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~-------~~~~~~~L~~~l~~--~~~~~~vr~~a~~aL~~~---  266 (318)
                        .   ....|.|..+|-|.|.-.|..|..++..+.       ..++.-+|++++--  -...|.|..+..+++-.+   
T Consensus      1029 mskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~ 1108 (1172)
T KOG0213|consen 1029 MSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVA 1108 (1172)
T ss_pred             HhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHH
Confidence              1   134466777888899989988888887653       34566666666531  012677877666666554   


Q ss_pred             -CChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchh
Q 021051          267 -ADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKS  305 (318)
Q Consensus       267 -~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~  305 (318)
                       |.....+++.+-+--+...||..-...+..+..+.+.-.
T Consensus      1109 Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~dal 1148 (1172)
T KOG0213|consen 1109 LGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQDAL 1148 (1172)
T ss_pred             hchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccchh
Confidence             344456666665666788999988888888777665543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=0.0046  Score=56.72  Aligned_cols=123  Identities=22%  Similarity=0.222  Sum_probs=91.0

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHH---Hhc------
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFA---LGQ------   75 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~a---L~~------   75 (318)
                      ...++++...+.|.+.  .+|..|+..+.+++.          ++..+.+.++..|.+..||..|=-.   +..      
T Consensus        83 ~~iv~Pv~~cf~D~d~--~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   83 EKIVPPVLNCFSDQDS--QVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA  160 (675)
T ss_pred             HHhhHHHHHhccCccc--eeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc
Confidence            3467778888999987  999999999988754          4677788888888888887655221   111      


Q ss_pred             --cCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           76 --MQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        76 --~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                        +.-+..+|.|.+.+.  ..+|..|...+..|..+..          +...+.|.. ++.|++++||..+-.+++.+-
T Consensus       161 ~tFsL~~~ipLL~eriy--~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~-~LsD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIY--VINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFN-MLSDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             cccCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHH-HhcCCcHHHHHHHHHHHHHHH
Confidence              122345677777777  7899999999888876542          456778888 679999999988888777654

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.0041  Score=63.13  Aligned_cols=262  Identities=16%  Similarity=0.131  Sum_probs=161.7

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHH-Hhc---cCC--------CChHHHHHHhccCCCHHHHHHHHHHHhc---cCCCC
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFS-LRN---LKG--------PGPRDALIRATKDSSNLLAHEAAFALGQ---MQDAE   80 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~-l~~---~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~---~~~~~   80 (318)
                      ...+.|...+.++++  ..|..++-. |.-   +++        ++....+...|.|.|..++.-|.+-+|-   +|+..
T Consensus       818 ~~~~~l~~~~~s~np--h~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~  895 (1702)
T KOG0915|consen  818 IILKLLDTLLTSPNP--HERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS  895 (1702)
T ss_pred             HHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence            355567778888887  888876543 322   221        4566777788899999999999998874   45443


Q ss_pred             c----HHHHHHhhhcC---------------------CCC---HHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHH
Q 021051           81 A----IPALEAVLNDF---------------------SLH---PIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRE  132 (318)
Q Consensus        81 ~----~~~L~~~l~~~---------------------~~~---~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~  132 (318)
                      .    +..|++-|.-.                     .++   -..-...+...+.+++|+.+=.+.++..++-.+.-|+
T Consensus       896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~  975 (1702)
T KOG0915|consen  896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK  975 (1702)
T ss_pred             hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence            3    34443333310                     111   1233455556667778888888888454556788999


Q ss_pred             HHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC--CC------
Q 021051          133 TCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH--GG------  204 (318)
Q Consensus       133 ~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~--~~------  204 (318)
                      .|+.+++.+.  ..+.......+                ++.+|.|++.-.||+..+   +.|+..+-+.  .+      
T Consensus       976 GaAfGf~~i~--~~a~~kl~p~l----------------~kLIPrLyRY~yDP~~~V---q~aM~sIW~~Li~D~k~~vd 1034 (1702)
T KOG0915|consen  976 GAAFGFGAIA--KQAGEKLEPYL----------------KKLIPRLYRYQYDPDKKV---QDAMTSIWNALITDSKKVVD 1034 (1702)
T ss_pred             chhhchHHHH--HHHHHhhhhHH----------------HHhhHHHhhhccCCcHHH---HHHHHHHHHHhccChHHHHH
Confidence            9999999887  22211111111                346888888888888875   3344333322  22      


Q ss_pred             ---hhHHHHHHHHhCCCCHHHHHHHHHHHhccC--C---------cchHHHHHHHHhccCCCHHHHHHHH---HHHhccC
Q 021051          205 ---DEAVSAIIDSLGATSALLKHEVAYVLGQLQ--N---------KAASAALSDVLRNVNEHPMVRHEAA---EALGSIA  267 (318)
Q Consensus       205 ---~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~---------~~~~~~L~~~l~~~~~~~~vr~~a~---~aL~~~~  267 (318)
                         .+.+..|...+.+..|.||..++-+|..+=  .         ++....+...+.|-  ...||.+|=   .+|+++.
T Consensus      1035 ~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI--KEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1035 EYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI--KESVREAADKAARALSKLC 1112 (1702)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence               244455666667899999999999998752  1         23334444445555  567886554   4444432


Q ss_pred             ----C-------hh----hHHHHHH-hhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          268 ----D-------DQ----SIGLLKE-FAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       268 ----~-------~~----~~~~L~~-~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                          +       .+    ++|+|.. -.-++-+.||+.++..+..+.....
T Consensus      1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred             hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch
Confidence                1       22    4555554 1225679999999999887766533

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.45  E-value=0.0033  Score=60.49  Aligned_cols=123  Identities=21%  Similarity=0.250  Sum_probs=81.1

Q ss_pred             cHHHHHHHHcCCCcChHHHHHHHHHHHhC---CCh---hHHHHHHHHhCCCCHHHHHHHHHHHhccCCcc----hHHHHH
Q 021051          174 SVDMLREVLLGEEKGMYERYAALFALRNH---GGD---EAVSAIIDSLGATSALLKHEVAYVLGQLQNKA----ASAALS  243 (318)
Q Consensus       174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~---~~~---~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~----~~~~L~  243 (318)
                      ..+.+++.....+...  +.-.-..+..+   ...   -++..+.+=+.|+++.+|..|++.++.++.++    .++.+.
T Consensus        56 Lf~dViK~~~trd~El--KrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik  133 (757)
T COG5096          56 LFPDVIKNVATRDVEL--KRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIK  133 (757)
T ss_pred             HHHHHHHHHHhcCHHH--HHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            4666777666544443  33333333332   222   33445555567888888888888888888764    455666


Q ss_pred             HHHhccCCCHHHHHHHHHHHhccC--Ch------hhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          244 DVLRNVNEHPMVRHEAAEALGSIA--DD------QSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       244 ~~l~~~~~~~~vr~~a~~aL~~~~--~~------~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      +.+.++  ++.||+.|+.+++++=  ++      +.+..+..++.|.+|.|...|..+|..+...
T Consensus       134 ~~l~d~--~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         134 KLLTDP--HAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHccCC--cHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            667776  7888888888888863  21      2455556677788888888888888887666

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.31  E-value=0.0011  Score=64.26  Aligned_cols=122  Identities=20%  Similarity=0.184  Sum_probs=89.4

Q ss_pred             hhhHHHHHHhhc----CCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCC---CHHHHHHHHHHHhccCC---CCcHHH
Q 021051           15 PEMEKFLCDRLV----DPTQPISERFRALFSLRNLKGPGPRDALIRATKDS---SNLLAHEAAFALGQMQD---AEAIPA   84 (318)
Q Consensus        15 ~~~~~~L~~~L~----~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~---~~~vr~~a~~aL~~~~~---~~~~~~   84 (318)
                      +..++.+...|.    ..+.  ..+..++++||+++.+..++.|..++.+.   +..+|..|+++|.++..   ....+.
T Consensus       485 ~~~~~~l~~~l~~~~~~~~~--~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~  562 (618)
T PF01347_consen  485 EKYVPYLEQELKEAVSRGDE--EEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREI  562 (618)
T ss_dssp             GGGTHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccCH--HHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHH
Confidence            344444444444    4443  89999999999999999999999999655   78999999999996542   256788


Q ss_pred             HHHhhhcCCCCHHHHHHHHHHHHhc-CCCCcHHHHHhhhccCCCHHHHHHHHHHH
Q 021051           85 LEAVLNDFSLHPIVRHEAAEALGAI-GLESNIPLLKNSLVSDPAQEVRETCELAL  138 (318)
Q Consensus        85 L~~~l~~~~~~~~vR~~a~~~L~~~-~~~~~~~~L~~~l~~d~~~~vr~~a~~aL  138 (318)
                      |.+++.+..+++.+|.+|+..|-.. +....+..+...+..+++..|+......|
T Consensus       563 l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  563 LLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             HHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             HHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence            9999997788899999999999887 55566777888777899999987665544

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT

Probab=97.30  E-value=0.00027  Score=37.50  Aligned_cols=26  Identities=46%  Similarity=0.547  Sum_probs=18.5

Q ss_pred             HHHHHHHHHhccCChhhHHHHHHhhc
Q 021051          255 VRHEAAEALGSIADDQSIGLLKEFAK  280 (318)
Q Consensus       255 vr~~a~~aL~~~~~~~~~~~L~~~l~  280 (318)
                      ||.+|+++||.+|++.+++.|.++++
T Consensus         1 VR~~Aa~aLg~igd~~ai~~L~~~L~   26 (27)
T PF03130_consen    1 VRRAAARALGQIGDPRAIPALIEALE   26 (27)
T ss_dssp             HHHHHHHHHGGG-SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence            57777777777777777777777654

Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.011  Score=56.17  Aligned_cols=195  Identities=15%  Similarity=0.138  Sum_probs=120.3

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHH-hcc--CC--CChHHHHHHhccCCCHHHHHHHHHHHhccC---CCCcHHHHH
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSL-RNL--KG--PGPRDALIRATKDSSNLLAHEAAFALGQMQ---DAEAIPALE   86 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l-~~~--~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~~~~~~~L~   86 (318)
                      ...+..+...|.+..+  ..|..|++-. +.+  |.  ...-+.+++.....|-..+...-.-+...+   ...++-.+-
T Consensus        12 k~ei~elks~l~s~~~--~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avn   89 (734)
T KOG1061|consen   12 KGEIPELKSQLNSQSK--EKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVN   89 (734)
T ss_pred             hhhchHHHHHhhhhhh--hhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhh
Confidence            4466777777776665  6666666654 443  21  235566666666666555444433333333   223333333


Q ss_pred             Hhhh-cCCCCHHHHHHHHHHHHhcCCCCc----HHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCc
Q 021051           87 AVLN-DFSLHPIVRHEAAEALGAIGLESN----IPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFM  161 (318)
Q Consensus        87 ~~l~-~~~~~~~vR~~a~~~L~~~~~~~~----~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~  161 (318)
                      .+++ ..+++|.+|..|++.++.++....    ...+.+ ..+|.++.+|+.++.+.+.+.. .+.              
T Consensus        90 t~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~-~l~d~~~yvRktaa~~vakl~~-~~~--------------  153 (734)
T KOG1061|consen   90 TFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLK-CLKDDDPYVRKTAAVCVAKLFD-IDP--------------  153 (734)
T ss_pred             hhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHH-hccCCChhHHHHHHHHHHHhhc-CCh--------------
Confidence            3333 238999999999999999987664    445666 5589999999999999998761 000              


Q ss_pred             ccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhCCCCHHHHHHHHHHH
Q 021051          162 SVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAIIDSLGATSALLKHEVAYVL  230 (318)
Q Consensus       162 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~~L  230 (318)
                           ....+...++.|..++.|+++.+  -.+|+.+|..+-.           ...+..+++.++.-+.+-+...+..+
T Consensus       154 -----~~~~~~gl~~~L~~ll~D~~p~V--VAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l  226 (734)
T KOG1061|consen  154 -----DLVEDSGLVDALKDLLSDSNPMV--VANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCL  226 (734)
T ss_pred             -----hhccccchhHHHHHHhcCCCchH--HHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence                 00012346788888888777664  6777777776622           23444455555555555666666666


Q ss_pred             hccC
Q 021051          231 GQLQ  234 (318)
Q Consensus       231 ~~~~  234 (318)
                      ....
T Consensus       227 ~~y~  230 (734)
T KOG1061|consen  227 AEYV  230 (734)
T ss_pred             HhcC
Confidence            6654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.22  E-value=0.003  Score=58.56  Aligned_cols=193  Identities=17%  Similarity=0.167  Sum_probs=126.3

Q ss_pred             CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-------CCCcH----HHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 021051           80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIG-------LESNI----PLLKNSLVSDPAQEVRETCELALERIEKLKASG  148 (318)
Q Consensus        80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------~~~~~----~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~  148 (318)
                      ..+..++..|.  ++.|.+|..|+..++.+.       ....+    -.|.+ .+...+|+|-...+.|+..+-+ -+  
T Consensus       604 ~ivStiL~~L~--~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE-~lge~ypEvLgsil~Ai~~I~s-v~--  677 (975)
T COG5181         604 MIVSTILKLLR--SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYE-NLGEDYPEVLGSILKAICSIYS-VH--  677 (975)
T ss_pred             HHHHHHHHHhc--CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHH-hcCcccHHHHHHHHHHHHHHhh-hh--
Confidence            45677788888  788889988888776542       11111    22344 2355677777777666665430 00  


Q ss_pred             ccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh--------hHH---HHHHHHhCC
Q 021051          149 SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD--------EAV---SAIIDSLGA  217 (318)
Q Consensus       149 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~--------~~~---~~l~~~l~d  217 (318)
                                .+.+..|-    -...+|.|.-.|++....+  ..+.+..++.++..        +.+   -.|+..|++
T Consensus       678 ----------~~~~mqpP----i~~ilP~ltPILrnkh~Kv--~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks  741 (975)
T COG5181         678 ----------RFRSMQPP----ISGILPSLTPILRNKHQKV--VANTIALVGTICMNSPEYIGVREWMRICFELVDSLKS  741 (975)
T ss_pred             ----------cccccCCc----hhhccccccHhhhhhhHHH--hhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH
Confidence                      12222221    1346888888998877764  77778888887542        232   335666778


Q ss_pred             CCHHHHHHHHHHHhcc----CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC----ChhhHHHHHHhhcCCCHHHHHH
Q 021051          218 TSALLKHEVAYVLGQL----QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA----DDQSIGLLKEFAKDPEPIVSQS  289 (318)
Q Consensus       218 ~~~~vr~~a~~~L~~~----~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~~~~~~vr~~  289 (318)
                      -+.++|+.|...+|.+    |+.+++..|++.++..  +...|....-+++..+    .=..+|.|..-...++..|+.-
T Consensus       742 ~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvq--eRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnG  819 (975)
T COG5181         742 WNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQ--ERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNG  819 (975)
T ss_pred             hhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHH--HHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHh
Confidence            8999999999999975    4567788888877754  4556655555555443    2247888888778889999999


Q ss_pred             HHHHHHh
Q 021051          290 CEVALSM  296 (318)
Q Consensus       290 a~~aL~~  296 (318)
                      ...|++-
T Consensus       820 vLkam~f  826 (975)
T COG5181         820 VLKAMCF  826 (975)
T ss_pred             HHHHHHH
Confidence            8888874

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=97.22  E-value=0.00051  Score=37.45  Aligned_cols=29  Identities=45%  Similarity=0.707  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHhccCChhhHHHHHHhhcC
Q 021051          253 PMVRHEAAEALGSIADDQSIGLLKEFAKD  281 (318)
Q Consensus       253 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~~  281 (318)
                      +.||++|+++||+++++.+++.|.++++|
T Consensus         1 ~~vR~~aa~aLg~~~~~~a~~~L~~~l~d   29 (30)
T smart00567        1 PLVRHEAAFALGQLGDEEAVPALIKALED   29 (30)
T ss_pred             CHHHHHHHHHHHHcCCHhHHHHHHHHhcC
Confidence            35788888888888888888888887765

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.21  E-value=0.0015  Score=54.69  Aligned_cols=114  Identities=25%  Similarity=0.279  Sum_probs=61.7

Q ss_pred             cCCCCCHHHHHHHHHHHhccCC----CC-----------hHHHHHHhccCCCHHHHHHHHHHHhccCC----------CC
Q 021051           26 VDPTQPISERFRALFSLRNLKG----PG-----------PRDALIRATKDSSNLLAHEAAFALGQMQD----------AE   80 (318)
Q Consensus        26 ~~~~~~~~~r~~A~~~l~~~~~----~~-----------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~   80 (318)
                      ..++.+|..|..|+..+..+-.    ..           ....+...++|....+...|+..++.+..          ..
T Consensus        15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~   94 (228)
T PF12348_consen   15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI   94 (228)
T ss_dssp             HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred             cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence            3344479999999998876521    11           11334444555566667777776655431          13


Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----CCc-HHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----ESN-IPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----~~~-~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      .+|.|++.+.  +....+|..|..+|..+..     +.. .+.+.. ..+++++.+|..++..+..+-
T Consensus        95 ~l~~Ll~~~~--~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~-~~~~Kn~~vR~~~~~~l~~~l  159 (228)
T PF12348_consen   95 LLPPLLKKLG--DSKKFIREAANNALDAIIESCSYSPKILLEILSQ-GLKSKNPQVREECAEWLAIIL  159 (228)
T ss_dssp             HHHHHHHGGG-----HHHHHHHHHHHHHHHTTS-H--HHHHHHHHH-HTT-S-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc--cccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHH
Confidence            4566666666  6777777777777765431     233 344444 567788888888877777654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=96.95  E-value=0.077  Score=49.22  Aligned_cols=279  Identities=16%  Similarity=0.128  Sum_probs=166.4

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHH------------hc-cCCCHHHHHHHHHHHhc------
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIR------------AT-KDSSNLLAHEAAFALGQ------   75 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~------------~l-~d~~~~vr~~a~~aL~~------   75 (318)
                      +...+.+.+...+..| ...+..++..++.....+.-+.|++            .+ +.++..+|.+++.+|..      
T Consensus       132 p~lm~~mv~nvg~eqp-~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~  210 (858)
T COG5215         132 PGLMEEMVRNVGDEQP-VSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQ  210 (858)
T ss_pred             hHHHHHHHHhccccCc-hHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666664 5788889999888876433333332            22 35678999999999864      


Q ss_pred             --cCCCC----cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051           76 --MQDAE----AIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPLLKNSLVSDPAQEVRETCELALE  139 (318)
Q Consensus        76 --~~~~~----~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~  139 (318)
                        +....    ......+...  .+|..+..+++-+|.++--          +..+-.|.....+.++..|...+++...
T Consensus       211 ~nf~~E~erNy~mqvvceatq--~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWs  288 (858)
T COG5215         211 GNFCYEEERNYFMQVVCEATQ--GNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWS  288 (858)
T ss_pred             Hhhcchhhhchhheeeehhcc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence              22222    2333344445  8899999999999987631          2233344444668899999999988886


Q ss_pred             HHHhhhccCcc-ccccccCCCCcccCCCCCCCCCccHHHHHHHHcC-------CCcChHHHHHH---HHHHHhCCCh---
Q 021051          140 RIEKLKASGSD-GSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG-------EEKGMYERYAA---LFALRNHGGD---  205 (318)
Q Consensus       140 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-------~~~~~~~r~~a---~~~L~~~~~~---  205 (318)
                      .+.. ..-... ....+...+.....-+. ..-...+|.|+.+|..       +++..  -.+|   ++.......+   
T Consensus       289 tice-Eeid~~~e~~~~pe~p~qn~~fa~-aav~dvlP~lL~LL~~q~ed~~~DdWn~--smaA~sCLqlfaq~~gd~i~  364 (858)
T COG5215         289 TICE-EEIDGEMEDKYLPEVPAQNHGFAR-AAVADVLPELLSLLEKQGEDYYGDDWNP--SMAASSCLQLFAQLKGDKIM  364 (858)
T ss_pred             HHHH-HHhhhHHHHhhcccCchhhcchHH-HHHHHHHHHHHHHHHhcCCCccccccch--hhhHHHHHHHHHHHhhhHhH
Confidence            6651 111000 00000000000000000 0013467889999864       23332  3333   4444444443   


Q ss_pred             -hHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh----
Q 021051          206 -EAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD----  269 (318)
Q Consensus       206 -~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~----  269 (318)
                       ..+..+...+.+++|.-|..++-++|.+-+           ++++|.|...+.|+  .-.|+..+++++|.|.+-    
T Consensus       365 ~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~--~l~vk~ttAwc~g~iad~va~~  442 (858)
T COG5215         365 RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS--CLWVKSTTAWCFGAIADHVAMI  442 (858)
T ss_pred             HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc--eeehhhHHHHHHHHHHHHHHHh
Confidence             344445556678899999999999998643           46778888888876  788999999999998742    


Q ss_pred             ----hhHHHHH-Hhhc--CCCHHHHHHHHHHHHhchhhhc
Q 021051          270 ----QSIGLLK-EFAK--DPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       270 ----~~~~~L~-~~l~--~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                          ..++... ..+.  .+.|.+...+.|+..++-.+-+
T Consensus       443 i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a  482 (858)
T COG5215         443 ISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIA  482 (858)
T ss_pred             cCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhh
Confidence                1122222 2222  2567777888888877755433

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.86  E-value=0.0049  Score=49.51  Aligned_cols=78  Identities=23%  Similarity=0.294  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHhccC--C----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC-------CcHHHHHhhhccCCCH
Q 021051           62 SNLLAHEAAFALGQMQ--D----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE-------SNIPLLKNSLVSDPAQ  128 (318)
Q Consensus        62 ~~~vr~~a~~aL~~~~--~----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~-------~~~~~L~~~l~~d~~~  128 (318)
                      +|.+|..++.++|.+.  .    ....+.+...|.  |+++.||..|+..|.++-..       ..+..+.. +..|+++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~--D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~-~l~D~~~   77 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLR--DEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILK-LLVDENP   77 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHH-HHcCCCH
Confidence            4677888888887544  2    245677888888  88889999888888875322       22255566 4489999


Q ss_pred             HHHHHHHHHHHHHH
Q 021051          129 EVRETCELALERIE  142 (318)
Q Consensus       129 ~vr~~a~~aL~~~~  142 (318)
                      .||..|...+..+.
T Consensus        78 ~Ir~~A~~~~~e~~   91 (178)
T PF12717_consen   78 EIRSLARSFFSELL   91 (178)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988876

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=96.77  E-value=0.12  Score=43.56  Aligned_cols=75  Identities=16%  Similarity=0.207  Sum_probs=50.7

Q ss_pred             cHHHHHHHHcCCCcChHHHHHHHHHHHhCC------ChhHHHHHHHHh----CCCCHHHHHHHHHHHhccCCcchHHHHH
Q 021051          174 SVDMLREVLLGEEKGMYERYAALFALRNHG------GDEAVSAIIDSL----GATSALLKHEVAYVLGQLQNKAASAALS  243 (318)
Q Consensus       174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~------~~~~~~~l~~~l----~d~~~~vr~~a~~~L~~~~~~~~~~~L~  243 (318)
                      ..+.|.+++.+++...++|.+|+.+|..+.      .++.+..+..++    +..+..+-...+..+-.+...+..+.+.
T Consensus       112 ~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~  191 (249)
T PF06685_consen  112 DIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIR  191 (249)
T ss_pred             CHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHH
Confidence            477788888888888888998888887652      234444444433    3344445556666777777778888887


Q ss_pred             HHHhc
Q 021051          244 DVLRN  248 (318)
Q Consensus       244 ~~l~~  248 (318)
                      +...+
T Consensus       192 ~~f~~  196 (249)
T PF06685_consen  192 KAFED  196 (249)
T ss_pred             HHHHc
Confidence            77764

The function of this family is unknown.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.76  E-value=0.0067  Score=48.73  Aligned_cols=76  Identities=18%  Similarity=0.233  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhCCC------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC------Ccc-hHHHHHHHHhccCCCHHHHH
Q 021051          191 ERYAALFALRNHGG------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ------NKA-ASAALSDVLRNVNEHPMVRH  257 (318)
Q Consensus       191 ~r~~a~~~L~~~~~------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~------~~~-~~~~L~~~l~~~~~~~~vr~  257 (318)
                      +|..++.++|.+..      +..++.+...|+|+++.||..|+..|..+-      ... ....++..+.|+  ++.||.
T Consensus         4 vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~--~~~Ir~   81 (178)
T PF12717_consen    4 VRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE--NPEIRS   81 (178)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC--CHHHHH
Confidence            58888888885532      356777888888999999999988888742      222 336666777776  888988


Q ss_pred             HHHHHHhccCC
Q 021051          258 EAAEALGSIAD  268 (318)
Q Consensus       258 ~a~~aL~~~~~  268 (318)
                      .|...+..+..
T Consensus        82 ~A~~~~~e~~~   92 (178)
T PF12717_consen   82 LARSFFSELLK   92 (178)
T ss_pred             HHHHHHHHHHH
Confidence            88888877753

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=96.75  E-value=0.12  Score=48.66  Aligned_cols=219  Identities=11%  Similarity=0.111  Sum_probs=130.8

Q ss_pred             CCCHHHHHHHHHHHhc-----------cCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----C-------CCcHHH
Q 021051           60 DSSNLLAHEAAFALGQ-----------MQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----L-------ESNIPL  117 (318)
Q Consensus        60 d~~~~vr~~a~~aL~~-----------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----~-------~~~~~~  117 (318)
                      ..|...+.+|+..+-.           .........|++++.  +++..|...++-++.++-    +       ...++.
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~--dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~  465 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM--DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI  465 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh--CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence            4466666666655522           345577899999999  999999999999998753    2       356888


Q ss_pred             HHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHH
Q 021051          118 LKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALF  197 (318)
Q Consensus       118 L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~  197 (318)
                      +.+ +..++++.+|..+.|.|.++. +-.....+.+.++               +-....+..+..|+++++  ...+.+
T Consensus       466 l~s-~~~~~~~n~r~~~~~~Lr~l~-f~~de~~k~~~~~---------------ki~a~~i~~l~nd~d~~V--qeq~fq  526 (678)
T KOG1293|consen  466 LES-MLTDPDFNSRANSLWVLRHLM-FNCDEEEKFQLLA---------------KIPANLILDLINDPDWAV--QEQCFQ  526 (678)
T ss_pred             HHH-HhcCCCchHHHHHHHHHHHHH-hcchHHHHHHHHH---------------HhhHHHHHHHHhCCCHHH--HHHHHH
Confidence            999 778999999999999999987 2111111000000               112445667777888875  889999


Q ss_pred             HHHhCCCh--hHHHHHHHHhCCCCHHHHHHHHHHHhcc--CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHH
Q 021051          198 ALRNHGGD--EAVSAIIDSLGATSALLKHEVAYVLGQL--QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIG  273 (318)
Q Consensus       198 ~L~~~~~~--~~~~~l~~~l~d~~~~vr~~a~~~L~~~--~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~  273 (318)
                      .|+++-..  +.+..+.+-..+-    --.....+ ++  +.+-..+.+...+........+...|.+.+-.+---.+--
T Consensus       527 llRNl~c~~~~svdfll~~~~~~----ld~i~l~l-k~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~  601 (678)
T KOG1293|consen  527 LLRNLTCNSRKSVDFLLEKFKDV----LDKIDLQL-KIAIGSPILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEV  601 (678)
T ss_pred             HHHHhhcCcHHHHHHHHHhhhHH----HHHHHHHH-hhccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            99988543  6777776654332    11111112 22  2333334433333222113345555555444432111111


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          274 LLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       274 ~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      ...+.....+.+.+..+.|-+-.+.+..++.
T Consensus       602 ~~n~~q~s~~~qls~~~~~~iinl~~~~s~s  632 (678)
T KOG1293|consen  602 NENKKQLSIEQQLSLNIMSEIINLTTTDSSS  632 (678)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCCCCCc
Confidence            2223344566777888888888777776643

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.065  Score=51.32  Aligned_cols=89  Identities=17%  Similarity=0.170  Sum_probs=52.7

Q ss_pred             ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh--------hHHHHHHHHhCCCCHHHHHHHHHHHhccC--Cc----ch
Q 021051          173 SSVDMLREVLLGEEKGMYERYAALFALRNHGGD--------EAVSAIIDSLGATSALLKHEVAYVLGQLQ--NK----AA  238 (318)
Q Consensus       173 ~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~--------~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~~----~~  238 (318)
                      .++..|.+++.|...    +..+...|..+|.+        ..+..+.+..-=.+..+|.+|+.+|.+++  ++    ..
T Consensus       429 ~~L~~LCefIEDce~----~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI  504 (865)
T KOG1078|consen  429 RGLEHLCEFIEDCEF----TQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSI  504 (865)
T ss_pred             HHHHHHHHHHHhccc----hHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccH
Confidence            356677777766654    33344444443321        22233333222346788999999999887  32    23


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          239 SAALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       239 ~~~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                      .-.|...+.|.  |.+||-.|--+|..+.
T Consensus       505 ~vllkRc~~D~--DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  505 LVLLKRCLNDS--DDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHHHHHHhcCc--hHHHHHHHHHHHHHhh
Confidence            34445555665  7889988888887775

>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT

Probab=96.74  E-value=0.0019  Score=34.14  Aligned_cols=26  Identities=31%  Similarity=0.446  Sum_probs=14.0

Q ss_pred             HHHHHHHHHhccCCcchHHHHHHHHh
Q 021051          222 LKHEVAYVLGQLQNKAASAALSDVLR  247 (318)
Q Consensus       222 vr~~a~~~L~~~~~~~~~~~L~~~l~  247 (318)
                      ||..|+.+||.++++.+++.|++.++
T Consensus         1 VR~~Aa~aLg~igd~~ai~~L~~~L~   26 (27)
T PF03130_consen    1 VRRAAARALGQIGDPRAIPALIEALE   26 (27)
T ss_dssp             HHHHHHHHHGGG-SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence            35555555555555555555555554

Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.72  E-value=0.0088  Score=50.04  Aligned_cols=119  Identities=27%  Similarity=0.268  Sum_probs=76.4

Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-----CCc-H
Q 021051           19 KFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD-----AEA-I   82 (318)
Q Consensus        19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----~~~-~   82 (318)
                      ..+...+.|...  .+-..|+..+..+..          +..++.|++.+.+....++..|..+|..+..     ... .
T Consensus        56 ~~i~~~l~d~Rs--~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~  133 (228)
T PF12348_consen   56 DAIIKQLSDLRS--KVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILL  133 (228)
T ss_dssp             HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHH
T ss_pred             HHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHH
Confidence            345556666665  677778887766533          3467777788889999999999888876543     223 4


Q ss_pred             HHHHHhhhcCCCCHHHHHHHHHHHHhc----C-------C----CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           83 PALEAVLNDFSLHPIVRHEAAEALGAI----G-------L----ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        83 ~~L~~~l~~~~~~~~vR~~a~~~L~~~----~-------~----~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      +.+.....  ++++.+|..++..+..+    +       .    +...+.+.+ +.+|+++.||..|..++..+.
T Consensus       134 ~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~-~l~D~~~~VR~~Ar~~~~~l~  205 (228)
T PF12348_consen  134 EILSQGLK--SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVK-LLSDADPEVREAARECLWALY  205 (228)
T ss_dssp             HHHHHHTT---S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHH-HHTSS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh--CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHH
Confidence            55555566  89999999999887653    2       0    124556666 668999999999999998875

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.65  E-value=0.0028  Score=34.73  Aligned_cols=26  Identities=42%  Similarity=0.590  Sum_probs=14.1

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051          239 SAALSDVLRNVNEHPMVRHEAAEALGSI  266 (318)
Q Consensus       239 ~~~L~~~l~~~~~~~~vr~~a~~aL~~~  266 (318)
                      +|.+++.+.|+  +|.||.+|+++|+.+
T Consensus         2 lp~l~~~l~D~--~~~VR~~a~~~l~~i   27 (31)
T PF02985_consen    2 LPILLQLLNDP--SPEVRQAAAECLGAI   27 (31)
T ss_dssp             HHHHHHHHT-S--SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence            45555555555  556666666655554

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.4  Score=41.65  Aligned_cols=262  Identities=15%  Similarity=0.191  Sum_probs=140.5

Q ss_pred             CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC---------------CChHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051           13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG---------------PGPRDALIRATKDSSNLLAHEAAFALGQMQ   77 (318)
Q Consensus        13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~   77 (318)
                      +.++..+.|...|..++.  .++..++..++.+-.               .+..+.+.......|..|-.+|+..+.++.
T Consensus        79 lapnlmpdLQrGLiadda--sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria  156 (524)
T KOG4413|consen   79 LAPNLMPDLQRGLIADDA--SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA  156 (524)
T ss_pred             hchhhhHHHHhcccCCcc--hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            455666777777777776  788888887766532               234455555667778888888888887765


Q ss_pred             C-CCcHHHHH-----------HhhhcCCCCHHHHHHHHHHHHhc-----------CCCCcHHHHHhhhccCCCHHHHHHH
Q 021051           78 D-AEAIPALE-----------AVLNDFSLHPIVRHEAAEALGAI-----------GLESNIPLLKNSLVSDPAQEVRETC  134 (318)
Q Consensus        78 ~-~~~~~~L~-----------~~l~~~~~~~~vR~~a~~~L~~~-----------~~~~~~~~L~~~l~~d~~~~vr~~a  134 (318)
                      - +.+...+.           ++..  ..+..+|...+..+-.+           .....+..|..-+...+|.-|+..+
T Consensus       157 lfpaaleaiFeSellDdlhlrnlaa--kcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianc  234 (524)
T KOG4413|consen  157 LFPAALEAIFESELLDDLHLRNLAA--KCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANC  234 (524)
T ss_pred             hcHHHHHHhcccccCChHHHhHHHh--hhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhH
Confidence            3 12222221           1111  12223333333333222           1234455544435555777888888


Q ss_pred             HHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh---------
Q 021051          135 ELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD---------  205 (318)
Q Consensus       135 ~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~---------  205 (318)
                      +.-...+..-.|+..          |.        ..+..+..+-..+...+..-+....++...+++=.+         
T Consensus       235 iElvteLaeteHgre----------fl--------aQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvsee  296 (524)
T KOG4413|consen  235 IELVTELAETEHGRE----------FL--------AQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEE  296 (524)
T ss_pred             HHHHHHHHHHhhhhh----------hc--------chhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHH
Confidence            877776662222221          11        012244455555543333323466566655554221         


Q ss_pred             hHH-------HHHHHHhCCCCHHHHHHHHHHHhccCCc------------chHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051          206 EAV-------SAIIDSLGATSALLKHEVAYVLGQLQNK------------AASAALSDVLRNVNEHPMVRHEAAEALGSI  266 (318)
Q Consensus       206 ~~~-------~~l~~~l~d~~~~vr~~a~~~L~~~~~~------------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~  266 (318)
                      ...       +...+.....|+.....|+.++|.+|..            -....++...-+.+ ...-+..++++|..|
T Consensus       297 aicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaI  375 (524)
T KOG4413|consen  297 AICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAI  375 (524)
T ss_pred             HHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHh
Confidence            111       1222334566888889999999998752            12233333333332 122334566677666


Q ss_pred             CCh-------------------------------hhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051          267 ADD-------------------------------QSIGLLKEFAKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       267 ~~~-------------------------------~~~~~L~~~l~~~~~~vr~~a~~aL~~l  297 (318)
                      ...                               .-...+...++.+.++++.++...+.-+
T Consensus       376 agelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAi  437 (524)
T KOG4413|consen  376 AGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAI  437 (524)
T ss_pred             hccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHH
Confidence            410                               1134455667778888888887766544

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.60  E-value=0.22  Score=49.52  Aligned_cols=226  Identities=15%  Similarity=0.107  Sum_probs=130.6

Q ss_pred             CChHHHHHHhccCCCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--CCCc
Q 021051           48 PGPRDALIRATKDSSNLLAHEAAFALGQMQD-----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG--LESN  114 (318)
Q Consensus        48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--~~~~  114 (318)
                      |+-.|.+.+.|-+  -..|..|+..|+++-+           -...|+++++|+  .+...+|--.+..=++|-  ++..
T Consensus       471 PeQLPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQ--S~a~ELrpiLVFIWAKILAvD~SC  546 (1387)
T KOG1517|consen  471 PEQLPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQ--SSARELRPILVFIWAKILAVDPSC  546 (1387)
T ss_pred             hHhcchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhc--cchHhhhhhHHHHHHHHHhcCchh
Confidence            4556666665542  2456677777766432           256799999999  677777755555444432  2333


Q ss_pred             HHHHHhh--------hccC---CCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHc
Q 021051          115 IPLLKNS--------LVSD---PAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLL  183 (318)
Q Consensus       115 ~~~L~~~--------l~~d---~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~  183 (318)
                      ...|.+-        .+.+   -+++.|..++..|+.+-+  +...+-..++               ..+.+...++.+.
T Consensus       547 Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~--nf~lGQ~acl---------------~~~li~iCle~ln  609 (1387)
T KOG1517|consen  547 QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVR--NFKLGQKACL---------------NGNLIGICLEHLN  609 (1387)
T ss_pred             HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHc--ccchhHHHhc---------------cccHHHHHHHHhc
Confidence            2222220        1111   246889999999988761  1111011111               2346778888887


Q ss_pred             CCCcChHHHHHHHHHHHhCC-----------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCc------chHHHHHHHH
Q 021051          184 GEEKGMYERYAALFALRNHG-----------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQNK------AASAALSDVL  246 (318)
Q Consensus       184 ~~~~~~~~r~~a~~~L~~~~-----------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~------~~~~~L~~~l  246 (318)
                      ++..+. .|.-.+-+||++=           ...+-+.|...+.|+-++||.+|+-+||.+-..      +....+-+.+
T Consensus       610 d~~~pL-LrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~  688 (1387)
T KOG1517|consen  610 DDPEPL-LRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEI  688 (1387)
T ss_pred             CCccHH-HHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhh
Confidence            764443 5888888888761           235678888899999999999999999975321      1112221111


Q ss_pred             hccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          247 RNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       247 ~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      .=+  +..++.+   -+..    ...-.+..++++..+-||.+...+|.++..+...+
T Consensus       689 ~l~--~~~~~~E---~~i~----~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~  737 (1387)
T KOG1517|consen  689 DLD--DERTSIE---DLII----KGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSH  737 (1387)
T ss_pred             cch--hhhhhHH---HHHH----hhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence            100  1111111   0000    11135666778888888888888888876665544

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.59  E-value=0.0062  Score=43.43  Aligned_cols=51  Identities=24%  Similarity=0.303  Sum_probs=27.6

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHhccCC----------hhhHHHHHHhhcCCCHHHHHHHH
Q 021051          239 SAALSDVLRNVNEHPMVRHEAAEALGSIAD----------DQSIGLLKEFAKDPEPIVSQSCE  291 (318)
Q Consensus       239 ~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~  291 (318)
                      ++.++..+.|+  ++.||+.|+++|.++..          .+..+.|.++..|+++.||..|.
T Consensus        29 l~pVL~~~~D~--d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~   89 (97)
T PF12755_consen   29 LPPVLKCFDDQ--DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE   89 (97)
T ss_pred             HHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence            34444444444  45555555555544421          23456666667777777777664

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.51  E-value=0.0047  Score=33.84  Aligned_cols=27  Identities=37%  Similarity=0.673  Sum_probs=18.8

Q ss_pred             HHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051          115 IPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus       115 ~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      +|.+.+ +.+|+++.||.+++.+|+.+.
T Consensus         2 lp~l~~-~l~D~~~~VR~~a~~~l~~i~   28 (31)
T PF02985_consen    2 LPILLQ-LLNDPSPEVRQAAAECLGAIA   28 (31)
T ss_dssp             HHHHHH-HHT-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HcCCCCHHHHHHHHHHHHHHH
Confidence            466667 557778888888888777765

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.45  E-value=0.32  Score=46.34  Aligned_cols=58  Identities=16%  Similarity=0.110  Sum_probs=38.2

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCC----hHHHHHHhcc--CCCHHHHHHHHHHHhc
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKGPG----PRDALIRATK--DSSNLLAHEAAFALGQ   75 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~----~~~~L~~~l~--d~~~~vr~~a~~aL~~   75 (318)
                      ..+..+..-|.+.++  .....|+..++.+|+.+    ..+.+-++|-  +..+.||..|+-+|-+
T Consensus       111 lvin~iknDL~srn~--~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~  174 (938)
T KOG1077|consen  111 LVINSIKNDLSSRNP--TFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLR  174 (938)
T ss_pred             HHHHHHHhhhhcCCc--HHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHH
Confidence            344555666777776  78888999999998843    3334446663  4456777777666543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.33  Score=45.11  Aligned_cols=210  Identities=19%  Similarity=0.162  Sum_probs=133.7

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhc----cC---
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQ----MQ---   77 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~----~~---   77 (318)
                      ++.++.|.+.+...++  ..|..-+..+..+..          +...+-|...|+|+++.||...=.++++    +.   
T Consensus       166 ~~~ipLL~eriy~~n~--~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P  243 (675)
T KOG0212|consen  166 PEFIPLLRERIYVINP--MTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP  243 (675)
T ss_pred             HHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence            4567778888888887  889888888877654          4677778888899999999666555543    22   


Q ss_pred             ----CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc---CCCC-------cHHHHHhhhccCCCH-HHHHHHHHHHHHHH
Q 021051           78 ----DAEAIPALEAVLNDFSLHPIVRHEAAEALGAI---GLES-------NIPLLKNSLVSDPAQ-EVRETCELALERIE  142 (318)
Q Consensus        78 ----~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~---~~~~-------~~~~L~~~l~~d~~~-~vr~~a~~aL~~~~  142 (318)
                          .++.++.+..-+.  ++++.++..|+..+..+   +..+       .+..+..++ .+..+ .++..+...=+.+.
T Consensus       244 ~s~d~~~~i~vlv~~l~--ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~-s~~e~~~i~~~a~~~n~~l~  320 (675)
T KOG0212|consen  244 SSMDYDDMINVLVPHLQ--SSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCL-SDTEEMSIKEYAQMVNGLLL  320 (675)
T ss_pred             cccCcccchhhcccccc--CCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCC-CCCccccHHHHHHHHHHHHH
Confidence                2356788888888  88999998888877654   3333       333444423 34333 34433332222222


Q ss_pred             hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----C------ChhHHHHHH
Q 021051          143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----G------GDEAVSAII  212 (318)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~------~~~~~~~l~  212 (318)
                      ....++....+               ++-...++-|.+.+.++....  |.++++-+..+    +      .+.....+.
T Consensus       321 ~l~s~~~~~~~---------------id~~~ii~vl~~~l~~~~~~t--ri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL  383 (675)
T KOG0212|consen  321 KLVSSERLKEE---------------IDYGSIIEVLTKYLSDDREET--RIAVLNWIILLYHKAPGQLLVHNDSIFLTLL  383 (675)
T ss_pred             HHHhhhhhccc---------------cchHHHHHHHHHHhhcchHHH--HHHHHHHHHHHHhhCcchhhhhccHHHHHHH
Confidence            00001100000               111235788888998888776  88888766544    2      246678888


Q ss_pred             HHhCCCCHHHHHHHHHHHhccCCc----chHHHHHHHH
Q 021051          213 DSLGATSALLKHEVAYVLGQLQNK----AASAALSDVL  246 (318)
Q Consensus       213 ~~l~d~~~~vr~~a~~~L~~~~~~----~~~~~L~~~l  246 (318)
                      +.|+|++..|-..++..+..+...    ...+++..++
T Consensus       384 ~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL  421 (675)
T KOG0212|consen  384 KTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLL  421 (675)
T ss_pred             HhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence            999999999999999999988643    3344544444

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.26  E-value=0.12  Score=48.16  Aligned_cols=121  Identities=20%  Similarity=0.127  Sum_probs=82.9

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--CC--------hHHHHHHhccCCCHHHHHHHHHHHhccCCC------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG--PG--------PRDALIRATKDSSNLLAHEAAFALGQMQDA------   79 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~~--------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------   79 (318)
                      .+...+++.+.+++.  .+|...++.++.+.+  .+        ....|.+.+-|..+.||..|+.+|..+...      
T Consensus        91 ~~~~h~lRg~eskdk--~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen  168 (885)
T COG5218          91 GTFYHLLRGTESKDK--KVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN  168 (885)
T ss_pred             HHHHHHHhcccCcch--hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence            355567777888887  899999999887654  11        233444445688999999999999886531      


Q ss_pred             CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHH-HHHHHHHHHHHHH
Q 021051           80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQE-VRETCELALERIE  142 (318)
Q Consensus        80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~-vr~~a~~aL~~~~  142 (318)
                      .....|...+++ ||+..||+.|+..+..  +....|.+.+.. .|-+.. -|..-.+.|.++|
T Consensus       169 ~~~n~l~~~vqn-DPS~EVRr~allni~v--dnsT~p~IlERa-rDv~~anRr~vY~r~Lp~iG  228 (885)
T COG5218         169 RIVNLLKDIVQN-DPSDEVRRLALLNISV--DNSTYPCILERA-RDVSGANRRMVYERCLPRIG  228 (885)
T ss_pred             HHHHHHHHHHhc-CcHHHHHHHHHHHeee--CCCcchhHHHHh-hhhhHHHHHHHHHHHhhhhc
Confidence            235566777774 8999999998876653  446677777744 454443 3445566677776

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.25  E-value=0.011  Score=42.13  Aligned_cols=53  Identities=15%  Similarity=0.198  Sum_probs=42.8

Q ss_pred             hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC----------cchHHHHHHHHhccCCCHHHHHHH
Q 021051          205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQN----------KAASAALSDVLRNVNEHPMVRHEA  259 (318)
Q Consensus       205 ~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~~~~~~~~vr~~a  259 (318)
                      +..++.+.+++.|+++.||..|+++|..+..          ++..+.|.++..|+  ++.||.+|
T Consensus        26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~--d~~Vr~~a   88 (97)
T PF12755_consen   26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP--DENVRSAA   88 (97)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chhHHHHH
Confidence            4677888899999999999999999998642          34567777777887  88898866

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=96.25  E-value=0.005  Score=33.41  Aligned_cols=27  Identities=33%  Similarity=0.356  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHhccCCCChHHHHHHhcc
Q 021051           33 SERFRALFSLRNLKGPGPRDALIRATK   59 (318)
Q Consensus        33 ~~r~~A~~~l~~~~~~~~~~~L~~~l~   59 (318)
                      .+|..|+..|+.++++++++.|.+.++
T Consensus         2 ~vR~~aa~aLg~~~~~~a~~~L~~~l~   28 (30)
T smart00567        2 LVRHEAAFALGQLGDEEAVPALIKALE   28 (30)
T ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHhc
Confidence            345555555555554445555554444

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.05  E-value=0.095  Score=51.60  Aligned_cols=176  Identities=23%  Similarity=0.164  Sum_probs=118.3

Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-C---------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcc
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALGAIG-L---------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSD  150 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-~---------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~  150 (318)
                      ..+.+..-+.  +++|.-|..|++.+..+- .         ...+-.+.+....|.+-.|-..++..|..+.. .     
T Consensus       254 i~~~l~t~~~--s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~-~-----  325 (815)
T KOG1820|consen  254 ITKNLETEML--SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK-K-----  325 (815)
T ss_pred             cChHHHHhhh--ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH-h-----
Confidence            3456666667  899999999999886542 1         12233444446688899999999999998871 1     


Q ss_pred             ccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----hhHHHHHHHHhCCCCHHHHHHH
Q 021051          151 GSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----DEAVSAIIDSLGATSALLKHEV  226 (318)
Q Consensus       151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----~~~~~~l~~~l~d~~~~vr~~a  226 (318)
                          +.......        .....+.++..+.+.....  |-.++.++-.+++    ....+.+..++++.+|.++..+
T Consensus       326 ----lr~~~~~~--------~~~v~p~lld~lkekk~~l--~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~  391 (815)
T KOG1820|consen  326 ----LRPLFRKY--------AKNVFPSLLDRLKEKKSEL--RDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGEC  391 (815)
T ss_pred             ----cchhhHHH--------HHhhcchHHHHhhhccHHH--HHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHH
Confidence                11000000        1235677888887776654  7766666655543    4667888889999999999988


Q ss_pred             HHHHhc----cCC--------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhc
Q 021051          227 AYVLGQ----LQN--------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAK  280 (318)
Q Consensus       227 ~~~L~~----~~~--------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~  280 (318)
                      ...+..    +++        ....|.++....|.  +.+||.+|.++++.+-..-.-+.+.+++.
T Consensus       392 ~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~--~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~  455 (815)
T KOG1820|consen  392 LLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDT--DKDVRKAALEAVAAVMKVHGEEVFKKLLK  455 (815)
T ss_pred             HHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCC--cHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            777764    221        34678888888887  89999999999988753333333334333

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.98  E-value=0.16  Score=47.39  Aligned_cols=175  Identities=18%  Similarity=0.101  Sum_probs=106.2

Q ss_pred             hccCCCHHHHHHHHHHHhccCCC----------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----CC--CcHHHHHh
Q 021051           57 ATKDSSNLLAHEAAFALGQMQDA----------EAIPALEAVLNDFSLHPIVRHEAAEALGAIG----LE--SNIPLLKN  120 (318)
Q Consensus        57 ~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----~~--~~~~~L~~  120 (318)
                      .+.+++..||...+..|..+.+-          ..+..|.+-+.  |..+.||..|+.+|+++.    ++  ...-.|..
T Consensus        99 g~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~--DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~  176 (885)
T COG5218          99 GTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF--DREKAVRREAVKVLCYYQEMELNEENRIVNLLKD  176 (885)
T ss_pred             cccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            33677889999999988765431          12344455555  889999999999999875    22  23445666


Q ss_pred             hhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHH
Q 021051          121 SLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALR  200 (318)
Q Consensus       121 ~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~  200 (318)
                      .+.+||+.+||+.+..-+..-                              ....|-+++...|-+... .|..-...|-
T Consensus       177 ~vqnDPS~EVRr~allni~vd------------------------------nsT~p~IlERarDv~~an-Rr~vY~r~Lp  225 (885)
T COG5218         177 IVQNDPSDEVRRLALLNISVD------------------------------NSTYPCILERARDVSGAN-RRMVYERCLP  225 (885)
T ss_pred             HHhcCcHHHHHHHHHHHeeeC------------------------------CCcchhHHHHhhhhhHHH-HHHHHHHHhh
Confidence            566899999999876654421                              234666777776665543 2334445566


Q ss_pred             hCCChhH------HHHHHHHhCCCCHHHHHHHHHHHhc-cCCc--chHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051          201 NHGGDEA------VSAIIDSLGATSALLKHEVAYVLGQ-LQNK--AASAALSDVLRNVNEHPMVRHEAAEALGSI  266 (318)
Q Consensus       201 ~~~~~~~------~~~l~~~l~d~~~~vr~~a~~~L~~-~~~~--~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~  266 (318)
                      ++|+...      +-.+.-.+.|.+..++.+++.++.. |..+  .-+-.|++.+.-.  +..|-..|++++-.-
T Consensus       226 ~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvS--r~sv~v~aik~~F~~  298 (885)
T COG5218         226 RIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVS--RRSVLVAAIKGVFEK  298 (885)
T ss_pred             hhcchhhccccceehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhh--hHHHHHHHHHHHHhh
Confidence            6655321      1233346677788888888877764 2222  1222233444333  334666666665554

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.80  E-value=0.77  Score=40.33  Aligned_cols=72  Identities=21%  Similarity=0.266  Sum_probs=42.8

Q ss_pred             cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHH
Q 021051          114 NIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERY  193 (318)
Q Consensus       114 ~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~  193 (318)
                      ..+.|...+.++.+..+|..|..|+..+-  .+.......++               .-.....|...+.+++..+..+.
T Consensus       167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLI--Rn~~~g~~~fl---------------~~~G~~~L~~vl~~~~~~~~lkr  229 (342)
T KOG2160|consen  167 ALSKLLKILSSDDPNTVRTKALFAISSLI--RNNKPGQDEFL---------------KLNGYQVLRDVLQSNNTSVKLKR  229 (342)
T ss_pred             cHHHHHHHHccCCCchHHHHHHHHHHHHH--hcCcHHHHHHH---------------hcCCHHHHHHHHHcCCcchHHHH
Confidence            56667776777777788888888777654  11111101110               11246778888888766665566


Q ss_pred             HHHHHHHhC
Q 021051          194 AALFALRNH  202 (318)
Q Consensus       194 ~a~~~L~~~  202 (318)
                      -++..+..+
T Consensus       230 K~~~Ll~~L  238 (342)
T KOG2160|consen  230 KALFLLSLL  238 (342)
T ss_pred             HHHHHHHHH
Confidence            666666554

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.57  E-value=2  Score=41.30  Aligned_cols=90  Identities=21%  Similarity=0.262  Sum_probs=64.8

Q ss_pred             cHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh--------hHHHHHHHHhC-CCCHHHHHHHHHHHhccCCc----chHH
Q 021051          174 SVDMLREVLLGEEKGMYERYAALFALRNHGGD--------EAVSAIIDSLG-ATSALLKHEVAYVLGQLQNK----AASA  240 (318)
Q Consensus       174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~--------~~~~~l~~~l~-d~~~~vr~~a~~~L~~~~~~----~~~~  240 (318)
                      ....|-.++.+.+..+  |+-|++.+..+...        .-.+.+++.|+ +.|..+|..++..|-.|.|.    ..+.
T Consensus       330 ~~~~Lg~fls~rE~Ni--RYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~  407 (938)
T KOG1077|consen  330 AVNQLGQFLSHRETNI--RYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVA  407 (938)
T ss_pred             HHHHHHHHhhcccccc--hhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHH
Confidence            4567777888888887  99999888877431        12345667776 78899999999999988874    4566


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          241 ALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       241 ~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                      .|++.+...  ++.+|-..+.-++-+.
T Consensus       408 elLqYL~tA--d~sireeivlKvAILa  432 (938)
T KOG1077|consen  408 ELLQYLETA--DYSIREEIVLKVAILA  432 (938)
T ss_pred             HHHHHHhhc--chHHHHHHHHHHHHHH
Confidence            777777776  7777776655554443

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.88  Score=47.21  Aligned_cols=63  Identities=19%  Similarity=0.164  Sum_probs=30.3

Q ss_pred             hHHHHHHHHhccCCCHHHHHHHHHHHhccC---C-hhhHHHHHHhhc---CCCHHHHHHHHHHHHhchhhhc
Q 021051          238 ASAALSDVLRNVNEHPMVRHEAAEALGSIA---D-DQSIGLLKEFAK---DPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      .+..+...++|-  ++.+|+.-..|+|.+-   . ++++..+...+.   .+++..+..++..+..|.....
T Consensus      1278 ll~al~~g~~dR--Nesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~ 1347 (1702)
T KOG0915|consen 1278 LLRALFPGAKDR--NESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQ 1347 (1702)
T ss_pred             HHHHHhhccccc--cHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhH
Confidence            344555555665  6777776666666552   2 234444443221   1222333444444444554433

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.46  E-value=0.39  Score=41.98  Aligned_cols=84  Identities=20%  Similarity=0.186  Sum_probs=59.4

Q ss_pred             HhccCCCHHHHHHHHHHHhccCC------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc----C---------------
Q 021051           56 RATKDSSNLLAHEAAFALGQMQD------AEAIPALEAVLNDFSLHPIVRHEAAEALGAI----G---------------  110 (318)
Q Consensus        56 ~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~----~---------------  110 (318)
                      ..+.+.++.+|..++++||-.+-      ...++.+...+.  ..+..+|..|++++..+    |               
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~--~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~  111 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQ--KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD  111 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence            56677788888888888876541      234566677776  45788888888877643    1               


Q ss_pred             CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051          111 LESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus       111 ~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      .......+.+ +..+.++.++..+++++.++-
T Consensus       112 ~~~l~~~l~~-~l~~~~~~~~~~a~EGl~KLl  142 (298)
T PF12719_consen  112 SKSLLKILTK-FLDSENPELQAIAVEGLCKLL  142 (298)
T ss_pred             HhHHHHHHHH-HHhcCCHHHHHHHHHHHHHHH
Confidence            1234566777 445669999999999999986

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=95.42  E-value=0.057  Score=49.02  Aligned_cols=163  Identities=23%  Similarity=0.176  Sum_probs=88.3

Q ss_pred             CCCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCH
Q 021051           60 DSSNLLAHEAAFALGQMQD-----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQ  128 (318)
Q Consensus        60 d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~  128 (318)
                      +++..++.+|+++++-+--           .++...++..+.  |+.-.+|..++.++|+|.+          .+.+.-|
T Consensus       402 ~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~--d~~ln~r~KaawtlgnITd----------AL~~~~P  469 (728)
T KOG4535|consen  402 SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLE--DKSLNVRAKAAWSLGNITD----------ALIVNMP  469 (728)
T ss_pred             hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhh--hHhHhHHHHHHHHhhhhHH----------HHHcCCC
Confidence            3456688888888765321           123444555555  6677788888888887653          2234445


Q ss_pred             HHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----
Q 021051          129 EVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----  204 (318)
Q Consensus       129 ~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----  204 (318)
                      .+|..+.++.+.+-                                ...+......+-....||..++.+|+++-.    
T Consensus       470 s~~s~~eR~sg~ll--------------------------------~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~  517 (728)
T KOG4535|consen  470 TPDSFQERFSGLLL--------------------------------LKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP  517 (728)
T ss_pred             CchHHHHHHHHHHH--------------------------------HHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH
Confidence            55555555444322                                001111111111122357777777766521    


Q ss_pred             ------hhHHHH-HHHHh----CCCCHHHHHHHHHHHhccCC------------cchHHHHHHHHhccCCCHHHHHHHHH
Q 021051          205 ------DEAVSA-IIDSL----GATSALLKHEVAYVLGQLQN------------KAASAALSDVLRNVNEHPMVRHEAAE  261 (318)
Q Consensus       205 ------~~~~~~-l~~~l----~d~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~~~~~~~~vr~~a~~  261 (318)
                            .+.++. +.+++    -.....||+.++.++|++-.            +.+.+.|..++.+.. |-.||..|+-
T Consensus       518 i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~-NFKVRi~AA~  596 (728)
T KOG4535|consen  518 IEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK-NFKVRIRAAA  596 (728)
T ss_pred             hhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc-cceEeehhhh
Confidence                  011100 11111    12355788888888887532            234577777777643 7788888888


Q ss_pred             HHhccC
Q 021051          262 ALGSIA  267 (318)
Q Consensus       262 aL~~~~  267 (318)
                      +|..-+
T Consensus       597 aL~vp~  602 (728)
T KOG4535|consen  597 ALSVPG  602 (728)
T ss_pred             hhcCCC
Confidence            887765

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.38  E-value=0.64  Score=40.84  Aligned_cols=92  Identities=25%  Similarity=0.231  Sum_probs=51.9

Q ss_pred             ccHHHHHHHHcCCCcChHHHHHHHHHHHhC---C--ChhHHH----HHH-----HHhC-C---------CCHHHHHHHHH
Q 021051          173 SSVDMLREVLLGEEKGMYERYAALFALRNH---G--GDEAVS----AII-----DSLG-A---------TSALLKHEVAY  228 (318)
Q Consensus       173 ~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~---~--~~~~~~----~l~-----~~l~-d---------~~~~vr~~a~~  228 (318)
                      ...|.|...+.++......|..++.+|+-.   +  +.+.+.    .+.     ...+ +         +++.+...|+.
T Consensus       129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~  208 (309)
T PF05004_consen  129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS  208 (309)
T ss_pred             HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence            356788888888877666788888777654   2  122222    111     1111 1         12456666655


Q ss_pred             HHhccC----C-------cchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051          229 VLGQLQ----N-------KAASAALSDVLRNVNEHPMVRHEAAEALGSI  266 (318)
Q Consensus       229 ~L~~~~----~-------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~  266 (318)
                      +-+-+-    +       ...++.|..+|...  +.+||.+|.++|+-+
T Consensus       209 aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~--d~~VRiAAGEaiAll  255 (309)
T PF05004_consen  209 AWALLLTTLPDSKLEDLLEEALPALSELLDSD--DVDVRIAAGEAIALL  255 (309)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence            544321    1       23556677777665  777777777776654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=95.24  E-value=0.28  Score=46.28  Aligned_cols=136  Identities=16%  Similarity=0.138  Sum_probs=97.0

Q ss_pred             CCCHHHHHHHHHHHHh-----------cCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCc
Q 021051           93 SLHPIVRHEAAEALGA-----------IGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFM  161 (318)
Q Consensus        93 ~~~~~vR~~a~~~L~~-----------~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~  161 (318)
                      ..|..++.+|+..+-.           ..+.+....|++ +..||+..|...+..++.++-  ....+....        
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvq-ll~dp~~~i~~~~lgai~NlV--mefs~~ksk--------  456 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQ-LLMDPEIMIMGITLGAICNLV--MEFSNLKSK--------  456 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHH-HhhCcchhHHHHHHHHHHHHH--hhcccHHHH--------
Confidence            6778888777776543           234567888899 668999999999999998876  111111111        


Q ss_pred             ccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC--CChhH----------HHHHHHHhCCCCHHHHHHHHHH
Q 021051          162 SVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH--GGDEA----------VSAIIDSLGATSALLKHEVAYV  229 (318)
Q Consensus       162 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~--~~~~~----------~~~l~~~l~d~~~~vr~~a~~~  229 (318)
                             +.....+..+.+.+.+++...  |..+++.|..+  +.++.          ...|....+|++|.|...+.+.
T Consensus       457 -------fl~~ngId~l~s~~~~~~~n~--r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fql  527 (678)
T KOG1293|consen  457 -------FLRNNGIDILESMLTDPDFNS--RANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQL  527 (678)
T ss_pred             -------HHHcCcHHHHHHHhcCCCchH--HHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHH
Confidence                   112347899999999998886  99999999886  22211          1234455689999999999999


Q ss_pred             HhccCCc--chHHHHHHHHhc
Q 021051          230 LGQLQNK--AASAALSDVLRN  248 (318)
Q Consensus       230 L~~~~~~--~~~~~L~~~l~~  248 (318)
                      |..+-..  +.++.|++...+
T Consensus       528 lRNl~c~~~~svdfll~~~~~  548 (678)
T KOG1293|consen  528 LRNLTCNSRKSVDFLLEKFKD  548 (678)
T ss_pred             HHHhhcCcHHHHHHHHHhhhH
Confidence            9998654  778888776544

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.23  E-value=0.064  Score=53.62  Aligned_cols=128  Identities=20%  Similarity=0.197  Sum_probs=90.8

Q ss_pred             cHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCC------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcccc
Q 021051           81 AIPALEAVLNDF--SLHPIVRHEAAEALGAIGL------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGS  152 (318)
Q Consensus        81 ~~~~L~~~l~~~--~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~  152 (318)
                      ..|.+.+...+.  ..+|.++.+|--+|+++--      ...+|.|...+.+.|+|.+|.+++.+++.+.          
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDla----------  989 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA----------  989 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchh----------
Confidence            345555555431  4578999999999988642      3467888887878999999999999999776          


Q ss_pred             ccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC------CChhHHHHHHHHhCCCCHHHHHHH
Q 021051          153 SMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH------GGDEAVSAIIDSLGATSALLKHEV  226 (318)
Q Consensus       153 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~------~~~~~~~~l~~~l~d~~~~vr~~a  226 (318)
                             +.  .|..   -+...+.|++.|.|.+..+  |..|+..|..+      +.+.-+..+..++.|+++.++.-|
T Consensus       990 -------v~--fpnl---ie~~T~~Ly~rL~D~~~~v--Rkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlA 1055 (1251)
T KOG0414|consen  990 -------VR--FPNL---IEPWTEHLYRRLRDESPSV--RKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLA 1055 (1251)
T ss_pred             -------hh--cccc---cchhhHHHHHHhcCccHHH--HHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHH
Confidence                   10  1100   0224678999999888875  99999888765      345566777778899998888766


Q ss_pred             HHHHhc
Q 021051          227 AYVLGQ  232 (318)
Q Consensus       227 ~~~L~~  232 (318)
                      =....+
T Consensus      1056 k~FF~E 1061 (1251)
T KOG0414|consen 1056 KSFFKE 1061 (1251)
T ss_pred             HHHHHH
Confidence            633333

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=95.11  E-value=0.35  Score=44.11  Aligned_cols=257  Identities=18%  Similarity=0.102  Sum_probs=139.3

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhccCC---------CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHh
Q 021051           18 EKFLCDRLVDPTQPISERFRALFSLRNLKG---------PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAV   88 (318)
Q Consensus        18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~   88 (318)
                      .......+.+...|.-+|..+.+.|..+..         -+..-.+...+.+..|.++..++..+.+++.    ....+.
T Consensus       255 ~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~----~lv~~~  330 (728)
T KOG4535|consen  255 GSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGT----GLIQQY  330 (728)
T ss_pred             hhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHH----HHhhhc
Confidence            334455565554445688888887766543         1233334445578888888888888877665    112222


Q ss_pred             hhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCC
Q 021051           89 LNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAP  168 (318)
Q Consensus        89 l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  168 (318)
                      .-. .....+....++++.-.+.....  .   + ....+....+...++.+++. ..+..              .|   
T Consensus       331 ~P~-~~k~~~q~~~fw~~~l~~p~~~~--~---Y-Ds~~~Tl~~s~Cdals~i~~-~~f~~--------------lp---  385 (728)
T KOG4535|consen  331 KPD-STKAPDQRAPFWTMMLNGPLPRA--L---Y-DSEHPTLQASACDALSSILP-EAFSN--------------LP---  385 (728)
T ss_pred             CCC-cccchhhhccHHHHHccCCChhh--h---h-hhcCCCchhHHHHHHhhcCc-hhhcC--------------CC---
Confidence            221 22235556666666654422111  1   1 12234456666777777661 00000              00   


Q ss_pred             CCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC-----------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC--
Q 021051          169 ASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG-----------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN--  235 (318)
Q Consensus       169 ~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~-----------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~--  235 (318)
                      . +.+.....+..-.++.....++.+|+.+++-+-           ...+...+...+.|+.-..|..+++++|.+.+  
T Consensus       386 n-~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL  464 (728)
T KOG4535|consen  386 N-DRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDAL  464 (728)
T ss_pred             C-cchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHH
Confidence            0 011122222222333344346777777776552           12455666667778888999999999998864  


Q ss_pred             ----cc-------hHH-HHHHHH----hccCCCHHHHHHHHHHHhccCC-------h-------hhHHHHHH-hhcCCCH
Q 021051          236 ----KA-------ASA-ALSDVL----RNVNEHPMVRHEAAEALGSIAD-------D-------QSIGLLKE-FAKDPEP  284 (318)
Q Consensus       236 ----~~-------~~~-~L~~~l----~~~~~~~~vr~~a~~aL~~~~~-------~-------~~~~~L~~-~l~~~~~  284 (318)
                          |.       ... .|...+    ....++..||..++++||++-.       +       +.+..+.. ..-...-
T Consensus       465 ~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~  544 (728)
T KOG4535|consen  465 IVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAM  544 (728)
T ss_pred             HcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceeccccc
Confidence                11       111 122222    1112367899999999998641       0       11111111 1223457


Q ss_pred             HHHHHHHHHHHhchhhhcch
Q 021051          285 IVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       285 ~vr~~a~~aL~~l~~~~~~~  304 (318)
                      .||.-++.+++++-.+++-.
T Consensus       545 kV~WNaCya~gNLfkn~a~~  564 (728)
T KOG4535|consen  545 KVRWNACYAMGNLFKNPALP  564 (728)
T ss_pred             ccchHHHHHHHHhhcCcccc
Confidence            89999999999998876643

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.11  E-value=0.52  Score=45.98  Aligned_cols=65  Identities=14%  Similarity=0.118  Sum_probs=37.1

Q ss_pred             hccCCCHHHHHHHHHHHhccCC----------CCcHHHHHHhhhcCCCCHHHHHHHHH---HHHhcCCCCcHHHHHhhhc
Q 021051           57 ATKDSSNLLAHEAAFALGQMQD----------AEAIPALEAVLNDFSLHPIVRHEAAE---ALGAIGLESNIPLLKNSLV  123 (318)
Q Consensus        57 ~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~~~vR~~a~~---~L~~~~~~~~~~~L~~~l~  123 (318)
                      .+-|+.+.+|..+++.|..+-.          ...+....+.++  |+|+.|-..|++   .|+..-+++.+|.|.+.+.
T Consensus       735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lk--dedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~  812 (982)
T KOG4653|consen  735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLK--DEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYL  812 (982)
T ss_pred             HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhc--ccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            3345666667666666654321          134555666666  666666666666   4444445556666665443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.85  E-value=0.35  Score=47.77  Aligned_cols=170  Identities=19%  Similarity=0.160  Sum_probs=104.3

Q ss_pred             ccCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CC---hHHHHHH-hccCCCHHHHHHHHHHHhccCC-
Q 021051           11 FKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PG---PRDALIR-ATKDSSNLLAHEAAFALGQMQD-   78 (318)
Q Consensus        11 ~~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~---~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~-   78 (318)
                      .++.+...+.+...+.|++  |..|..|+..+...-.       +.   ....+++ .+.|.+-.+-..++..|..+.. 
T Consensus       248 ~di~~ki~~~l~t~~~s~~--WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~  325 (815)
T KOG1820|consen  248 VDILSKITKNLETEMLSKK--WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK  325 (815)
T ss_pred             hhhhhhcChHHHHhhhccc--hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence            3455666677777777775  7999999998866432       11   2222222 3367788888888877765442 


Q ss_pred             ---------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC----CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhh
Q 021051           79 ---------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE----SNIPLLKNSLVSDPAQEVRETCELALERIEKLK  145 (318)
Q Consensus        79 ---------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~----~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~  145 (318)
                               ....+.|++.+.  +..+.+|..+..++-.++..    ...+.+.. ++++.+|.++..+...+.+.-.+.
T Consensus       326 lr~~~~~~~~~v~p~lld~lk--ekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e-~lk~knp~~k~~~~~~l~r~~~~~  402 (815)
T KOG1820|consen  326 LRPLFRKYAKNVFPSLLDRLK--EKKSELRDALLKALDAILNSTPLSKMSEAILE-ALKGKNPQIKGECLLLLDRKLRKL  402 (815)
T ss_pred             cchhhHHHHHhhcchHHHHhh--hccHHHHHHHHHHHHHHHhcccHHHHHHHHHH-HhcCCChhhHHHHHHHHHHHHhhc
Confidence                     245677778888  77888887777777665542    34555666 567888888888887777654111


Q ss_pred             ccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC
Q 021051          146 ASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG  203 (318)
Q Consensus       146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~  203 (318)
                      ....              .  ........++.++....|.+.++  |.+|..+++.+-
T Consensus       403 ~~~~--------------~--~~~t~~~l~p~~~~~~~D~~~~V--R~Aa~e~~~~v~  442 (815)
T KOG1820|consen  403 GPKT--------------V--EKETVKTLVPHLIKHINDTDKDV--RKAALEAVAAVM  442 (815)
T ss_pred             CCcC--------------c--chhhHHHHhHHHhhhccCCcHHH--HHHHHHHHHHHH
Confidence            0000              0  00001234566666666666664  777777666553

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=94.60  E-value=0.067  Score=31.28  Aligned_cols=28  Identities=32%  Similarity=0.420  Sum_probs=21.6

Q ss_pred             hhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051          270 QSIGLLKEFAKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       270 ~~~~~L~~~l~~~~~~vr~~a~~aL~~l  297 (318)
                      ++++.|.++++++++.++..|++||+++
T Consensus        12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl   39 (41)
T PF00514_consen   12 GGIPPLVQLLKSPDPEVQEEAAWALGNL   39 (41)
T ss_dssp             THHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            5677788877777788888888887765

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=94.43  E-value=1.7  Score=35.73  Aligned_cols=128  Identities=20%  Similarity=0.221  Sum_probs=84.5

Q ss_pred             HHHHHHcCCCcChHHHHHHHHHHHhCCC---hhHHHHHHHHhCC-CCHHHHHHH-HHHHhccC--CcchHHHHHHHHhcc
Q 021051          177 MLREVLLGEEKGMYERYAALFALRNHGG---DEAVSAIIDSLGA-TSALLKHEV-AYVLGQLQ--NKAASAALSDVLRNV  249 (318)
Q Consensus       177 ~L~~~l~~~~~~~~~r~~a~~~L~~~~~---~~~~~~l~~~l~d-~~~~vr~~a-~~~L~~~~--~~~~~~~L~~~l~~~  249 (318)
                      .+..+..++..+  .|..|+..+.....   ...++.+...+.+ ++|.+.-.. ...++.+.  .+...+.+.+.+.++
T Consensus        55 l~~~L~~~~~~E--~~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~~W~~s~  132 (213)
T PF08713_consen   55 LADELWESGYRE--ERYLALLILDKRRKKLTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHPEALELLEKWAKSD  132 (213)
T ss_dssp             HHHHHHCSSCHH--HHHHHHHHHHHCGGG--HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHGGHHHHHHHHHHCS
T ss_pred             HHHHHcCCchHH--HHHHHHHHhHHHhhhhhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhCC
Confidence            344455555544  48888888876432   2345666666643 467666555 55566652  266788888888877


Q ss_pred             CCCHHHHHHHHHHHhccCChh----hHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhc
Q 021051          250 NEHPMVRHEAAEALGSIADDQ----SIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY  308 (318)
Q Consensus       250 ~~~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~  308 (318)
                        ++.+|+.++..+.......    .+..+...+.+++..|+.++.++|..+.....+.-.+|
T Consensus       133 --~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~  193 (213)
T PF08713_consen  133 --NEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEF  193 (213)
T ss_dssp             --SHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred             --cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence              8999999988877765433    33444455678899999999999999988766553444

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=94.24  E-value=3.5  Score=36.08  Aligned_cols=207  Identities=16%  Similarity=0.175  Sum_probs=108.7

Q ss_pred             CChHHHHHHhccCCCHHHHHHHHHHHhccCC---------------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-C
Q 021051           48 PGPRDALIRATKDSSNLLAHEAAFALGQMQD---------------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-L  111 (318)
Q Consensus        48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-~  111 (318)
                      +...+.|..-|..++..|+..++..+|.+-.               ....+.++.++-  .+|-.|-.+|++.+.++. .
T Consensus        81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg--geddeVAkAAiesikrialf  158 (524)
T KOG4413|consen   81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG--GEDDEVAKAAIESIKRIALF  158 (524)
T ss_pred             hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc--CCcHHHHHHHHHHHHHHHhc
Confidence            4567777777788888999999888887542               123455666666  788888888988888875 3


Q ss_pred             CCcHHHHHhhhccCCCHHHHHHHHHH--HHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcCh
Q 021051          112 ESNIPLLKNSLVSDPAQEVRETCELA--LERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGM  189 (318)
Q Consensus       112 ~~~~~~L~~~l~~d~~~~vr~~a~~a--L~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  189 (318)
                      +...+.+...=+.| +-..|..++.+  +.+..    -.+-+.+.+.-+.    ..+........+..|..-++..++. 
T Consensus       159 paaleaiFeSellD-dlhlrnlaakcndiaRvR----VleLIieifSiSp----esaneckkSGLldlLeaElkGteDt-  228 (524)
T KOG4413|consen  159 PAALEAIFESELLD-DLHLRNLAAKCNDIARVR----VLELIIEIFSISP----ESANECKKSGLLDLLEAELKGTEDT-  228 (524)
T ss_pred             HHHHHHhcccccCC-hHHHhHHHhhhhhHHHHH----HHHHHHHHHhcCH----HHHhHhhhhhHHHHHHHHhcCCcce-
Confidence            33444433311112 22233222211  11111    0000000000000    0000000122456666666553333 


Q ss_pred             HHHHHHHHHHHhCC----------ChhHHHHHHHHh--CCCCHHHHHHHHHHHhccCCc---------ch-------HHH
Q 021051          190 YERYAALFALRNHG----------GDEAVSAIIDSL--GATSALLKHEVAYVLGQLQNK---------AA-------SAA  241 (318)
Q Consensus       190 ~~r~~a~~~L~~~~----------~~~~~~~l~~~l--~d~~~~vr~~a~~~L~~~~~~---------~~-------~~~  241 (318)
                      .|+...+.....+.          ....+..+.+.+  .|++|--+..++-..|++-.+         ..       ++.
T Consensus       229 LVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidg  308 (524)
T KOG4413|consen  229 LVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDG  308 (524)
T ss_pred             eehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHh
Confidence            36877777665542          234455555555  356666666666555554221         11       222


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHhccCC
Q 021051          242 LSDVLRNVNEHPMVRHEAAEALGSIAD  268 (318)
Q Consensus       242 L~~~l~~~~~~~~vr~~a~~aL~~~~~  268 (318)
                      -.+.+...  ||...-.|+.++|.+|.
T Consensus       309 sfEmiEmn--DpdaieaAiDalGilGS  333 (524)
T KOG4413|consen  309 SFEMIEMN--DPDAIEAAIDALGILGS  333 (524)
T ss_pred             hHHhhhcC--CchHHHHHHHHHHhccC
Confidence            23334444  78899999999999984

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats

Probab=94.09  E-value=2.4  Score=34.91  Aligned_cols=120  Identities=12%  Similarity=0.022  Sum_probs=75.9

Q ss_pred             HHcCCCcChHHHHHHHHHHHhC---CChhHHHHHHHHhCC-CCHHHHHH-HHHHHhcc--CCcchHHHHHHHHhccCCCH
Q 021051          181 VLLGEEKGMYERYAALFALRNH---GGDEAVSAIIDSLGA-TSALLKHE-VAYVLGQL--QNKAASAALSDVLRNVNEHP  253 (318)
Q Consensus       181 ~l~~~~~~~~~r~~a~~~L~~~---~~~~~~~~l~~~l~d-~~~~vr~~-a~~~L~~~--~~~~~~~~L~~~l~~~~~~~  253 (318)
                      +..++..+  .|..|+..+...   .+...++.+...+.+ ++|.+.-. +-..+|.+  ..+...+.+.....++  +.
T Consensus        54 Lw~~~~~E--~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~~~~~~l~~W~~s~--~~  129 (208)
T cd07064          54 LWQQPERE--YQYVAIDLLRKYKKFLTPEDLPLLEELITTKSWWDTVDSLAKVVGGILLADYPEFEPVMDEWSTDE--NF  129 (208)
T ss_pred             HHcchHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHhCChhHHHHHHHHHcCC--cH
Confidence            44444333  388888877654   344556666666654 35555443 33333432  3444557777777776  77


Q ss_pred             HHHHHHHHHHhccCC---hh-hHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          254 MVRHEAAEALGSIAD---DQ-SIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       254 ~vr~~a~~aL~~~~~---~~-~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      -+|+.|+.+......   .+ ....+...+.|++..|+.++-|+|..+.......
T Consensus       130 W~rR~ai~~~l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~  184 (208)
T cd07064         130 WLRRTAILHQLKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDW  184 (208)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHH
Confidence            777777766555432   22 3344555778899999999999999999886644

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.02  E-value=1.6  Score=38.34  Aligned_cols=90  Identities=30%  Similarity=0.250  Sum_probs=57.2

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhccCCCHHHHHHHHHHHhcc----C--C-
Q 021051           18 EKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATKDSSNLLAHEAAFALGQM----Q--D-   78 (318)
Q Consensus        18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~--~-   78 (318)
                      +...+..|.++..  ..|..++..+...-.            ....+.+.+.++.....-+..|+++++-+    |  . 
T Consensus        45 L~~~Id~l~eK~~--~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKSS--STREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcCH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence            4455666777776  899999998866532            23455666666666555566666665432    2  1 


Q ss_pred             -----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 021051           79 -----AEAIPALEAVLNDFSLHPIVRHEAAEALGAI  109 (318)
Q Consensus        79 -----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~  109 (318)
                           ....|.|...+.+....+.+|..++.+|+-+
T Consensus       123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~  158 (309)
T PF05004_consen  123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAIC  158 (309)
T ss_pred             HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHH
Confidence                 1346777777774444567888888887743

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=93.99  E-value=0.11  Score=49.39  Aligned_cols=158  Identities=11%  Similarity=0.105  Sum_probs=88.6

Q ss_pred             hHHHHHHhccCCCHHHHHHHHHHHhccC--------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------CCC
Q 021051           50 PRDALIRATKDSSNLLAHEAAFALGQMQ--------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG--------LES  113 (318)
Q Consensus        50 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--------~~~  113 (318)
                      .++.|.++++..|..+|..-+.-+-.+.        .+...|.+..-+.  |.++.+|...+..+..+.        +.+
T Consensus       331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~--DTn~~Lre~Tlksm~~La~kL~~~~Ln~E  408 (690)
T KOG1243|consen  331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFL--DTNATLREQTLKSMAVLAPKLSKRNLNGE  408 (690)
T ss_pred             hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcc--cCCHHHHHHHHHHHHHHHhhhchhhhcHH
Confidence            6677777777777777766666654432        2345666666666  677777777776665432        122


Q ss_pred             cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHH
Q 021051          114 NIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERY  193 (318)
Q Consensus       114 ~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~  193 (318)
                      ....|.. +..|.+..+|.....++++++...+..             ..       ..-......+.++|+-.+.  |.
T Consensus       409 llr~~ar-~q~d~~~~irtntticlgki~~~l~~~-------------~R-------~~vL~~aftralkdpf~pa--R~  465 (690)
T KOG1243|consen  409 LLRYLAR-LQPDEHGGIRTNTTICLGKIAPHLAAS-------------VR-------KRVLASAFTRALKDPFVPA--RK  465 (690)
T ss_pred             HHHHHHh-hCccccCcccccceeeecccccccchh-------------hh-------ccccchhhhhhhcCCCCCc--hh
Confidence            3444555 444666667776666666665110000             00       0112334445666776665  88


Q ss_pred             HHHHHHHhCCCh--------hHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 021051          194 AALFALRNHGGD--------EAVSAIIDSLGATSALLKHEVAYVLGQ  232 (318)
Q Consensus       194 ~a~~~L~~~~~~--------~~~~~l~~~l~d~~~~vr~~a~~~L~~  232 (318)
                      +++..+...+..        ..++.+.-..-|++..+|..|..++..
T Consensus       466 a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~  512 (690)
T KOG1243|consen  466 AGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQ  512 (690)
T ss_pred             hhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHHH
Confidence            777777665431        223333334456677777776666643

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.91  E-value=0.36  Score=34.02  Aligned_cols=73  Identities=14%  Similarity=0.087  Sum_probs=36.4

Q ss_pred             cHHHHHHHHcCCCcChHHHHHHHHHHHhCC---C------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC---cchHHH
Q 021051          174 SVDMLREVLLGEEKGMYERYAALFALRNHG---G------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN---KAASAA  241 (318)
Q Consensus       174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~---~------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~---~~~~~~  241 (318)
                      .....+..+.|+..++  |..++..|+++-   +      +..+..+...++|+++-|--.|+++|..+.+   ..+++.
T Consensus         4 ~~~~al~~L~dp~~Pv--Ra~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~   81 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPV--RAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI   81 (92)
T ss_pred             HHHHHHHHccCCCcch--HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence            3455566666776665  777766665541   1      1222333344455555555555555444332   234455


Q ss_pred             HHHHHhc
Q 021051          242 LSDVLRN  248 (318)
Q Consensus       242 L~~~l~~  248 (318)
                      |++...+
T Consensus        82 L~~~y~~   88 (92)
T PF10363_consen   82 LLDEYAD   88 (92)
T ss_pred             HHHHHhC
Confidence            5544443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.81  E-value=0.43  Score=47.57  Aligned_cols=164  Identities=22%  Similarity=0.243  Sum_probs=103.1

Q ss_pred             CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 021051           80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG  148 (318)
Q Consensus        80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~  148 (318)
                      .-.|.+++.|-    +..-|..|+..|+++-+           -.++|..++ |++.+..++|...+...+++-.-+.+.
T Consensus       472 eQLPiVLQVLL----SQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK-LLQS~a~ELrpiLVFIWAKILAvD~SC  546 (1387)
T KOG1517|consen  472 EQLPIVLQVLL----SQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK-LLQSSARELRPILVFIWAKILAVDPSC  546 (1387)
T ss_pred             HhcchHHHHHH----HHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH-HhccchHhhhhhHHHHHHHHHhcCchh
Confidence            45677777766    23447788999988643           357899999 778999999999988888876211111


Q ss_pred             ccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC-CCcChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhC
Q 021051          149 SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG-EEKGMYERYAALFALRNHGG-----------DEAVSAIIDSLG  216 (318)
Q Consensus       149 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~  216 (318)
                      .  .+.+....+.               ..+..|.+ ..-+-..|..|+..|..+.+           ...+..=.+.++
T Consensus       547 Q--~dLvKe~g~~---------------YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~ln  609 (1387)
T KOG1517|consen  547 Q--ADLVKENGYK---------------YFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLN  609 (1387)
T ss_pred             H--HHHHhccCce---------------eEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhc
Confidence            0  0111110000               00001111 11111236666666665422           233344445667


Q ss_pred             CC-CHHHHHHHHHHHhccC-----------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          217 AT-SALLKHEVAYVLGQLQ-----------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       217 d~-~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                      |+ .|.+|.-++.+||++=           ...+.+.|...+.|+  .|+||.+|+-|||.+-
T Consensus       610 d~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~--vpEVRaAAVFALgtfl  670 (1387)
T KOG1517|consen  610 DDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP--VPEVRAAAVFALGTFL  670 (1387)
T ss_pred             CCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc--cHHHHHHHHHHHHHHh
Confidence            74 7999999999999852           145778999999987  8999999999999973

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=93.64  E-value=1.6  Score=36.85  Aligned_cols=78  Identities=22%  Similarity=0.298  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHhccCCCChHHHHHHhccCCCHH--------HHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHH
Q 021051           32 ISERFRALFSLRNLKGPGPRDALIRATKDSSNL--------LAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAA  103 (318)
Q Consensus        32 ~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~--------vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~  103 (318)
                      +..-..|+..|+.++..++.+.|+++++-++..        +-....+.+...+. ..++.|.+++.+.+-+..+|.+|+
T Consensus        56 ~~~~~~a~~LLaq~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~-G~~~~L~~li~~~~~~~yvR~aa~  134 (249)
T PF06685_consen   56 YNLHFYALYLLAQFREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD-GDIEPLKELIEDPDADEYVRMAAI  134 (249)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC-CCHHHHHHHHhCCcHHHHHHHHHH
Confidence            356788999999999999999999999644322        12223333444444 678889999996566789999999


Q ss_pred             HHHHhcC
Q 021051          104 EALGAIG  110 (318)
Q Consensus       104 ~~L~~~~  110 (318)
                      .+|..+.
T Consensus       135 ~aL~~l~  141 (249)
T PF06685_consen  135 SALAFLV  141 (249)
T ss_pred             HHHHHHH
Confidence            9998653

The function of this family is unknown.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.32  E-value=4.3  Score=37.43  Aligned_cols=89  Identities=24%  Similarity=0.227  Sum_probs=49.3

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhc-cCCCHHHHHHHHHHHhccCC-------
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRAT-KDSSNLLAHEAAFALGQMQD-------   78 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-------   78 (318)
                      ....+-.-..||+.  ..|..|++.|+....          +..++.++..| .+.+..|...++.+|...-.       
T Consensus       259 ~~~~la~ka~dp~a--~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l  336 (533)
T KOG2032|consen  259 VLLSLANKATDPSA--KSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL  336 (533)
T ss_pred             HHHHHHHhccCchh--HHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence            33334444555554  677777777776543          12444455444 33456677777776654321       


Q ss_pred             ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 021051           79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAI  109 (318)
Q Consensus        79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~  109 (318)
                          .+..-.+..++.  +.++.+|.+|+..++.+
T Consensus       337 ~~~~l~ialrlR~l~~--se~~~~R~aa~~Lfg~L  369 (533)
T KOG2032|consen  337 ESYLLNIALRLRTLFD--SEDDKMRAAAFVLFGAL  369 (533)
T ss_pred             hhhchhHHHHHHHHHH--hcChhhhhhHHHHHHHH
Confidence                123344455555  66667777776666544

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.15  E-value=0.84  Score=44.24  Aligned_cols=66  Identities=20%  Similarity=0.193  Sum_probs=32.6

Q ss_pred             CcchHHHHHHHHhccCCCHHHHHHHHHHHhccC-------------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051          235 NKAASAALSDVLRNVNEHPMVRHEAAEALGSIA-------------DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQ  301 (318)
Q Consensus       235 ~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~  301 (318)
                      .++-+..|+..+...  |-.||..+++-+..+=             .|..+..|..++.|....||..++.-|..+...+
T Consensus       120 ~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n  197 (970)
T KOG0946|consen  120 NQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDN  197 (970)
T ss_pred             CchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccC
Confidence            344444455555443  4445554444433321             2334555555555555556666665555555444


Q ss_pred             c
Q 021051          302 L  302 (318)
Q Consensus       302 ~  302 (318)
                      +
T Consensus       198 ~  198 (970)
T KOG0946|consen  198 S  198 (970)
T ss_pred             c
Confidence            4

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=93.14  E-value=0.16  Score=29.62  Aligned_cols=28  Identities=32%  Similarity=0.474  Sum_probs=21.6

Q ss_pred             ChHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051           49 GPRDALIRATKDSSNLLAHEAAFALGQM   76 (318)
Q Consensus        49 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~   76 (318)
                      ..++.|+++|.+.++.++..|+|+|+.+
T Consensus        12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl   39 (41)
T PF00514_consen   12 GGIPPLVQLLKSPDPEVQEEAAWALGNL   39 (41)
T ss_dssp             THHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            5677788888888888888888887754

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.14  E-value=0.45  Score=33.53  Aligned_cols=74  Identities=18%  Similarity=0.244  Sum_probs=52.6

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHhccC---C------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC---hhhHHH
Q 021051          207 AVSAIIDSLGATSALLKHEVAYVLGQLQ---N------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD---DQSIGL  274 (318)
Q Consensus       207 ~~~~l~~~l~d~~~~vr~~a~~~L~~~~---~------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---~~~~~~  274 (318)
                      ......+-++|+.+.+|..++..|.++-   +      +..+..+...++|+  ++-|-.+|+++|..+++   ...++.
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~--DsyVYL~aI~~L~~La~~~p~~vl~~   81 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDE--DSYVYLNAIKGLAALADRHPDEVLPI   81 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHHHChHHHHHH
Confidence            4455666778888899999998888752   1      23456666677776  78888888888888763   347777


Q ss_pred             HHHhhcCC
Q 021051          275 LKEFAKDP  282 (318)
Q Consensus       275 L~~~l~~~  282 (318)
                      |.+.+.+.
T Consensus        82 L~~~y~~~   89 (92)
T PF10363_consen   82 LLDEYADP   89 (92)
T ss_pred             HHHHHhCc
Confidence            77766553

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=93.12  E-value=8.6  Score=36.97  Aligned_cols=107  Identities=21%  Similarity=0.225  Sum_probs=70.2

Q ss_pred             HHHHHHHh-CCChhHHHHHHHHhCCCCHHHHHHHHHHHhccC--Cc--chHHHHHHHHhccCCCHHHHHHHHHHHhccCC
Q 021051          194 AALFALRN-HGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ--NK--AASAALSDVLRNVNEHPMVRHEAAEALGSIAD  268 (318)
Q Consensus       194 ~a~~~L~~-~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~~--~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~  268 (318)
                      .|+-++|. +|.+-++..+.+.+.-.++.+|+..=-++|-+.  +|  .+++.|.++..|.  +.+|-.+++-++|-+|.
T Consensus       627 iAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~--D~eva~naIfamGLiGA  704 (878)
T KOG2005|consen  627 IALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDG--DLEVAMNAIFAMGLIGA  704 (878)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCc--chHHHHHHHHHhccccC
Confidence            34444432 455667777777887788999988877777654  44  4678888888887  89999999999999972


Q ss_pred             ----hhhHHHHHHh----hcCCCHHHHHHHHHHHHhchhhhc
Q 021051          269 ----DQSIGLLKEF----AKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       269 ----~~~~~~L~~~----l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                          ......|.++    .+|.+.-.--.....|-.++.+.-
T Consensus       705 GTnNARla~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKGtl  746 (878)
T KOG2005|consen  705 GTNNARLAQMLRQLASYYYKDSKALFVVRIAQGLVHLGKGTL  746 (878)
T ss_pred             CcchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCce
Confidence                3344555543    344432222235566666666543

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=93.05  E-value=6.7  Score=39.67  Aligned_cols=123  Identities=20%  Similarity=0.172  Sum_probs=79.3

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CChHHHHHHhccCC-CHHHHHHHHHHHhccCCC--------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PGPRDALIRATKDS-SNLLAHEAAFALGQMQDA--------   79 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~--------   79 (318)
                      ..++.|...|.|.+.  .+|+.|++.++.+-.       .+++..++..++-. ++..-..++-+|++++..        
T Consensus       341 ~vie~Lls~l~d~dt--~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l  418 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDT--VVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL  418 (1133)
T ss_pred             HHHHHHHHhccCCcc--hhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH
Confidence            456667778888887  999999999998755       24555555655422 244555888888876632        


Q ss_pred             -CcHHHHHHhhhcC------CCCHHHHHHHHHHHHhcC---CCCc-HH-------HHHhhhccCCCHHHHHHHHHHHHH
Q 021051           80 -EAIPALEAVLNDF------SLHPIVRHEAAEALGAIG---LESN-IP-------LLKNSLVSDPAQEVRETCELALER  140 (318)
Q Consensus        80 -~~~~~L~~~l~~~------~~~~~vR~~a~~~L~~~~---~~~~-~~-------~L~~~l~~d~~~~vr~~a~~aL~~  140 (318)
                       ..+|.+...+.-+      ..-..||..|...+..+.   .+.. .|       .|..-..-|++-.+|++|..|+..
T Consensus       419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE  497 (1133)
T KOG1943|consen  419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE  497 (1133)
T ss_pred             HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence             4566666665511      233578988888776553   2221 12       122223458999999999999864

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=92.95  E-value=4.5  Score=37.06  Aligned_cols=124  Identities=19%  Similarity=0.173  Sum_probs=72.2

Q ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccc
Q 021051           82 IPALEAVLNDFSLHPIVRHEAAEALGAIGLE----------SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDG  151 (318)
Q Consensus        82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~  151 (318)
                      ...+++.|.+ ..+...|..|++.|..+...          -++..+++ ..+|.++.|-..|.....+..   .+    
T Consensus       331 L~~l~EvL~d-~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le-aa~ds~~~v~~~Aeed~~~~l---as----  401 (516)
T KOG2956|consen  331 LLLLLEVLSD-SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE-AAKDSQDEVMRVAEEDCLTTL---AS----  401 (516)
T ss_pred             HHHHHHHHcc-chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH-HHhCCchhHHHHHHHHHHHHH---Hh----
Confidence            3455666661 37888889999998877532          13555666 557888877777777655443   00    


Q ss_pred             cccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhCCCCH
Q 021051          152 SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAIIDSLGATSA  220 (318)
Q Consensus       152 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~d~~~  220 (318)
                                 ..|      ..-+..+...+...+.+.  -..+++.+.++-.           ++..|.+++.+.+.+.
T Consensus       402 -----------~~P------~~~I~~i~~~Ilt~D~~~--~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS  462 (516)
T KOG2956|consen  402 -----------HLP------LQCIVNISPLILTADEPR--AVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSS  462 (516)
T ss_pred             -----------hCc------hhHHHHHhhHHhcCcchH--HHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchH
Confidence                       111      112333444444444442  4444555554422           3556667777777777


Q ss_pred             HHHHHHHHHHhcc
Q 021051          221 LLKHEVAYVLGQL  233 (318)
Q Consensus       221 ~vr~~a~~~L~~~  233 (318)
                      .||.+++.+|-.|
T Consensus       463 ~VRKtaVfCLVam  475 (516)
T KOG2956|consen  463 TVRKTAVFCLVAM  475 (516)
T ss_pred             HhhhhHHHhHHHH
Confidence            7777777777554

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.79  E-value=3.7  Score=40.45  Aligned_cols=127  Identities=18%  Similarity=0.102  Sum_probs=82.2

Q ss_pred             CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHH---HHhccCCC
Q 021051           13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAF---ALGQMQDA   79 (318)
Q Consensus        13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~---aL~~~~~~   79 (318)
                      ...+.....+..+.|+.+  -+|..+++.+..+..          ..........|+|.|++|-..+++   .|...-..
T Consensus       724 ~~~e~~qeai~sl~d~qv--pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e  801 (982)
T KOG4653|consen  724 VDIEPLQEAISSLHDDQV--PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE  801 (982)
T ss_pred             ccHHHHHHHHHHhcCCcc--cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch
Confidence            444556677778888887  689999998876533          356777778889999999999999   66666666


Q ss_pred             CcHHHHHHhhhcCCC-C-HHHHHHHHHHHHh----cCC------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           80 EAIPALEAVLNDFSL-H-PIVRHEAAEALGA----IGL------ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        80 ~~~~~L~~~l~~~~~-~-~~vR~~a~~~L~~----~~~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      ..+|.|.+...+... . +..|...-+++.+    .|.      ...+..+.. ...||+...|..+...+|.+.
T Consensus       802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~-gvrepd~~~RaSS~a~lg~Lc  875 (982)
T KOG4653|consen  802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLS-GVREPDHEFRASSLANLGQLC  875 (982)
T ss_pred             hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHH-hcCCchHHHHHhHHHHHHHHH
Confidence            777888774442111 1 2222222233333    231      112333444 346888888998888888776

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.74  E-value=1.6  Score=38.49  Aligned_cols=92  Identities=17%  Similarity=0.120  Sum_probs=66.5

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhcc-CCCHHHHHHHHHHHhccC------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATK-DSSNLLAHEAAFALGQMQ------   77 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~------   77 (318)
                      .-...+...|++++.  .+|..|++++++...           ..+...|+..|+ +.+..+|..|+.+++.+=      
T Consensus       124 ggl~~ll~~l~~~~~--~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g  201 (342)
T KOG2160|consen  124 GGLVPLLGYLENSDA--ELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG  201 (342)
T ss_pred             cCHHHHHHHhcCCcH--HHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH
Confidence            345556668888887  999999999998754           245666777775 456678888888886521      


Q ss_pred             -----CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 021051           78 -----DAEAIPALEAVLNDFSLHPIVRHEAAEALGAI  109 (318)
Q Consensus        78 -----~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~  109 (318)
                           .......|.+++.+.+.+..+++.++..++.+
T Consensus       202 ~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~L  238 (342)
T KOG2160|consen  202 QDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLL  238 (342)
T ss_pred             HHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence                 12457888888884447788888888888765

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=92.71  E-value=0.75  Score=40.20  Aligned_cols=51  Identities=16%  Similarity=0.051  Sum_probs=24.4

Q ss_pred             HHHcCCCcChHHHHHHHHHHHhCCC------hhHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 021051          180 EVLLGEEKGMYERYAALFALRNHGG------DEAVSAIIDSLGATSALLKHEVAYVLGQ  232 (318)
Q Consensus       180 ~~l~~~~~~~~~r~~a~~~L~~~~~------~~~~~~l~~~l~d~~~~vr~~a~~~L~~  232 (318)
                      ..+.+++..  +|..++.+||-.+-      .+.++.+...+...+..++..|++++-.
T Consensus        34 P~v~~~~~~--vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~D   90 (298)
T PF12719_consen   34 PAVQSSDPA--VRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFD   90 (298)
T ss_pred             HHhcCCCHH--HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            333444443  25556655555421      2334444444444455555555555543

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.50  E-value=1.5  Score=45.66  Aligned_cols=120  Identities=15%  Similarity=0.164  Sum_probs=84.9

Q ss_pred             cHHHHHHHHcCCCcChHHHHHHHHHHHhCC--------ChhHHHHHHHHhCCCCHHHHHHHHHHHhcc--CCcch----H
Q 021051          174 SVDMLREVLLGEEKGMYERYAALFALRNHG--------GDEAVSAIIDSLGATSALLKHEVAYVLGQL--QNKAA----S  239 (318)
Q Consensus       174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~--~~~~~----~  239 (318)
                      .+..++..+..+..  .+|..|+++|..+.        .++....+..-+.|+...||.+|+..+|++  ..++.    .
T Consensus       817 yLk~Il~~l~e~~i--alRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY  894 (1692)
T KOG1020|consen  817 YLKLILSVLGENAI--ALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYY  894 (1692)
T ss_pred             HHHHHHHHhcCchH--HHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHH
Confidence            34556666664444  46999999999874        346666777778999999999999999974  44444    4


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHhccCCh-----hhHHHHHHh---hcCCCHHHHHHHHHHHHhc
Q 021051          240 AALSDVLRNVNEHPMVRHEAAEALGSIADD-----QSIGLLKEF---AKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       240 ~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-----~~~~~L~~~---l~~~~~~vr~~a~~aL~~l  297 (318)
                      ..+.+.+.|+  ...||+.+++.+..+...     .....+.++   .+|++..|+.-+...+.++
T Consensus       895 ~~i~erIlDt--gvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  895 DQIIERILDT--GVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             HHHHhhcCCC--chhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            5566666666  789999999999998632     233444444   4555665887777777655

>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4

Probab=92.37  E-value=0.37  Score=36.88  Aligned_cols=106  Identities=25%  Similarity=0.186  Sum_probs=60.8

Q ss_pred             ccCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHH-------HHHHhccC---CCHHHHHHHHHHHhccCCCC
Q 021051           11 FKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRD-------ALIRATKD---SSNLLAHEAAFALGQMQDAE   80 (318)
Q Consensus        11 ~~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~-------~L~~~l~d---~~~~vr~~a~~aL~~~~~~~   80 (318)
                      ..++.+.+..|+++|+++..  ..+...+..|...-.|.+.+       .|....+.   .+..-+..|+..||.+...-
T Consensus        17 lPL~a~Qt~~lielLk~~~~--~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY   94 (154)
T PF11791_consen   17 LPLNAEQTAELIELLKNPPA--GEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY   94 (154)
T ss_dssp             ----HHHHHHHHHHHHS--T--T-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST
T ss_pred             CCCCHHHHHHHHHHHhCCCC--ccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC
Confidence            34677889999999999986  56777778887765543321       12222221   23345778888888887777


Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-CCCcHHHHHh
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALGAIG-LESNIPLLKN  120 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-~~~~~~~L~~  120 (318)
                      .+..|+++|.  ++|..+...|..+|.+.- --+.+..+..
T Consensus        95 NV~~LI~~L~--~~d~~lA~~Aa~aLk~TlLvyDaf~dv~~  133 (154)
T PF11791_consen   95 NVQPLIDLLK--SDDEELAEEAAEALKNTLLVYDAFNDVAE  133 (154)
T ss_dssp             THHHHHHGG----G-TTTHHHHHHHHHT--TTCCHHHHHHH
T ss_pred             cHHHHHHHHc--CCcHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence            7888888887  677777788888887642 2234555555

2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.18  E-value=0.95  Score=46.95  Aligned_cols=122  Identities=18%  Similarity=0.168  Sum_probs=88.4

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccCCCHHHHHHHHHHHhccC--CCCcH---
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKDSSNLLAHEAAFALGQMQ--DAEAI---   82 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~~~~---   82 (318)
                      .-+..++..|..+..  .+|-+|++.+..+..        +++...+...+.|.+..||.+|+..+|++-  .++.+   
T Consensus       816 ~yLk~Il~~l~e~~i--alRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy  893 (1692)
T KOG1020|consen  816 PYLKLILSVLGENAI--ALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY  893 (1692)
T ss_pred             HHHHHHHHHhcCchH--HHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence            356777888887776  999999999988754        567888888999999999999999999753  33444   


Q ss_pred             -HHHHHhhhcCCCCHHHHHHHHHHHHhcCC--CC---cHHHHHhhh--ccCCCHHHHHHHHHHHHHH
Q 021051           83 -PALEAVLNDFSLHPIVRHEAAEALGAIGL--ES---NIPLLKNSL--VSDPAQEVRETCELALERI  141 (318)
Q Consensus        83 -~~L~~~l~~~~~~~~vR~~a~~~L~~~~~--~~---~~~~L~~~l--~~d~~~~vr~~a~~aL~~~  141 (318)
                       +.+.+-+.  |+...||..+++.+..+..  |+   ..+...+.+  .+|+...|...+...+-.+
T Consensus       894 Y~~i~erIl--DtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  894 YDQIIERIL--DTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             HHHHHhhcC--CCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence             44444455  7888999999999998863  22   222222211  2565556777777777665

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.00  E-value=2.9  Score=41.08  Aligned_cols=150  Identities=18%  Similarity=0.106  Sum_probs=98.2

Q ss_pred             hHHHHHHhhcCC-CCCHHHHHHHHHHHhcc---CC---------CChHHHHHHhccCC-CHHHHHHHHHHHhccC-----
Q 021051           17 MEKFLCDRLVDP-TQPISERFRALFSLRNL---KG---------PGPRDALIRATKDS-SNLLAHEAAFALGQMQ-----   77 (318)
Q Consensus        17 ~~~~L~~~L~~~-~~~~~~r~~A~~~l~~~---~~---------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~-----   77 (318)
                      -...|+.-|... ++  ..+..|+..|.++   +.         +..++.|+.+|+++ +..+...|+++|..+.     
T Consensus       168 k~kkLL~gL~~~~De--s~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~  245 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDE--SQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR  245 (1051)
T ss_pred             HHHHHHHhccccCCh--HHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence            455666666655 54  7777777776553   22         35788899999876 6889999999997654     


Q ss_pred             ------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC--------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 021051           78 ------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL--------ESNIPLLKNSLVSDPAQEVRETCELALERIEK  143 (318)
Q Consensus        78 ------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~  143 (318)
                            +..++|.|.+-|.. -+...|-..++.+|..+..        ...+..... ++.--.-.+++.|+...++...
T Consensus       246 S~a~vV~~~aIPvl~~kL~~-IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Ls-ylDFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  246 SSAIVVDEHAIPVLLEKLLT-IEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLS-YLDFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             hhheeecccchHHHHHhhhh-hhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence                  23588999887773 5778888888888887753        334444444 3233356677777777777661


Q ss_pred             hhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcC
Q 021051          144 LKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKG  188 (318)
Q Consensus       144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  188 (318)
                                .+....+...        .+++|.|..+|...+..
T Consensus       324 ----------si~sd~f~~v--------~ealPlL~~lLs~~D~k  350 (1051)
T KOG0168|consen  324 ----------SIRSDEFHFV--------MEALPLLTPLLSYQDKK  350 (1051)
T ss_pred             ----------cCCCccchHH--------HHHHHHHHHHHhhccch
Confidence                      1111112222        34688888888765554

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.96  E-value=0.81  Score=46.21  Aligned_cols=124  Identities=17%  Similarity=0.178  Sum_probs=90.6

Q ss_pred             cHHHHHHHHcC----CCcChHHHHHHHHHHHhCCC------hhHHHHHHHHhC-CCCHHHHHHHHHHHhccCC------c
Q 021051          174 SVDMLREVLLG----EEKGMYERYAALFALRNHGG------DEAVSAIIDSLG-ATSALLKHEVAYVLGQLQN------K  236 (318)
Q Consensus       174 ~~~~L~~~l~~----~~~~~~~r~~a~~~L~~~~~------~~~~~~l~~~l~-d~~~~vr~~a~~~L~~~~~------~  236 (318)
                      ..|.+.+..++    .++.  .+.+|.-+|+++-.      ...++.+...++ +++|.+|-.++-++|.+.-      +
T Consensus       920 f~piv~e~c~n~~~~sdp~--Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie  997 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPE--LQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE  997 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccc
Confidence            34555565533    3344  48888888888743      456788888775 7899999999999998652      2


Q ss_pred             chHHHHHHHHhccCCCHHHHHHHHHHHhccC------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051          237 AASAALSDVLRNVNEHPMVRHEAAEALGSIA------DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQ  301 (318)
Q Consensus       237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~  301 (318)
                      ...+.|...+.|.  ++.||..|+..|.-+-      -.+.+..+..++.|+++.|+.-|..-..++....
T Consensus       998 ~~T~~Ly~rL~D~--~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen  998 PWTEHLYRRLRDE--SPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred             hhhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence            3457788888887  8999999999887652      3456777778889999999999887666665544

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.86  E-value=1.2  Score=42.79  Aligned_cols=133  Identities=23%  Similarity=0.189  Sum_probs=83.7

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHhccC---CCC------------cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC------
Q 021051           52 DALIRATKDSSNLLAHEAAFALGQMQ---DAE------------AIPALEAVLNDFSLHPIVRHEAAEALGAIG------  110 (318)
Q Consensus        52 ~~L~~~l~d~~~~vr~~a~~aL~~~~---~~~------------~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~------  110 (318)
                      +.|...|+-++..||..|+..+-..-   +++            -...+..+|.  |+-|.||..|+..+.++-      
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~--d~~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLE--DPYPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHHHH
Confidence            44445566778888888888776532   222            2455677888  899999999999887643      


Q ss_pred             -CCCc-HHHH---HhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCC
Q 021051          111 -LESN-IPLL---KNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGE  185 (318)
Q Consensus       111 -~~~~-~~~L---~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  185 (318)
                       .+.. .+.|   ..-+..|....||.+...+|.-+..                    .|...-.-+..+|.|--.+.|+
T Consensus       255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~--------------------np~sh~~le~~Lpal~~~l~D~  314 (1005)
T KOG1949|consen  255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD--------------------NPLSHPLLEQLLPALRYSLHDN  314 (1005)
T ss_pred             cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc--------------------CccchhHHHHHHHhcchhhhcc
Confidence             1222 2222   2224467778999999998887651                    1111000123456666666666


Q ss_pred             CcChHHHHHHHHHHHhCCChhHH
Q 021051          186 EKGMYERYAALFALRNHGGDEAV  208 (318)
Q Consensus       186 ~~~~~~r~~a~~~L~~~~~~~~~  208 (318)
                      ...  ||.++++.|.++++..+.
T Consensus       315 se~--VRvA~vd~ll~ik~vra~  335 (1005)
T KOG1949|consen  315 SEK--VRVAFVDMLLKIKAVRAA  335 (1005)
T ss_pred             chh--HHHHHHHHHHHHHhhhhh
Confidence            665  599999999888765433

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats

Probab=91.68  E-value=5.9  Score=32.60  Aligned_cols=118  Identities=14%  Similarity=0.021  Sum_probs=70.7

Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHhccC---CCChHHHHHHhccCC-CHHHHHHHH-HHHhcc--CCCCcHHHHHHhhhcCC
Q 021051           21 LCDRLVDPTQPISERFRALFSLRNLK---GPGPRDALIRATKDS-SNLLAHEAA-FALGQM--QDAEAIPALEAVLNDFS   93 (318)
Q Consensus        21 L~~~L~~~~~~~~~r~~A~~~l~~~~---~~~~~~~L~~~l~d~-~~~vr~~a~-~aL~~~--~~~~~~~~L~~~l~~~~   93 (318)
                      +..+..++..  +.|..|+..+....   ++...+.+..++.+. ++.+--..+ ..+|.+  ..+...+.+.+...  +
T Consensus        51 ~~~Lw~~~~~--E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~~~~~~l~~W~~--s  126 (208)
T cd07064          51 VLELWQQPER--EYQYVAIDLLRKYKKFLTPEDLPLLEELITTKSWWDTVDSLAKVVGGILLADYPEFEPVMDEWST--D  126 (208)
T ss_pred             HHHHHcchHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHhCChhHHHHHHHHHc--C
Confidence            4446666665  78888887775542   233455566666544 334433333 333332  23233466777777  7


Q ss_pred             CCHHHHHHHHHHHHhcC---CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           94 LHPIVRHEAAEALGAIG---LESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        94 ~~~~vR~~a~~~L~~~~---~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      ++..+|+.|+-+.-...   +.+.+-.+...+.+|++..|+++..++|..++
T Consensus       127 ~~~W~rR~ai~~~l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~  178 (208)
T cd07064         127 ENFWLRRTAILHQLKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYS  178 (208)
T ss_pred             CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Confidence            88888877776554332   22222223444678889999999999999887

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=91.25  E-value=2.3  Score=40.24  Aligned_cols=116  Identities=15%  Similarity=0.090  Sum_probs=74.5

Q ss_pred             HHHHHHHHcCCCcChHHHHHHHHHHHhCC------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC------cchHHHH
Q 021051          175 VDMLREVLLGEEKGMYERYAALFALRNHG------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN------KAASAAL  242 (318)
Q Consensus       175 ~~~L~~~l~~~~~~~~~r~~a~~~L~~~~------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~------~~~~~~L  242 (318)
                      ...++.....   ...++.-|...+.++=      .++++..+..+..|.+..||..|+..|..++.      +...++|
T Consensus        25 y~~il~~~kg---~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL  101 (556)
T PF05918_consen   25 YKEILDGVKG---SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVL  101 (556)
T ss_dssp             HHHHHHGGGS----HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHH
T ss_pred             HHHHHHHccC---CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHH
Confidence            3444444433   2334777777777652      25788899999999999999999999999864      3567888


Q ss_pred             HHHHhccCCCHHHH---HHHHHHHhccCChhhHHHHHHhhc---CCCHHHHHHHHHHHH
Q 021051          243 SDVLRNVNEHPMVR---HEAAEALGSIADDQSIGLLKEFAK---DPEPIVSQSCEVALS  295 (318)
Q Consensus       243 ~~~l~~~~~~~~vr---~~a~~aL~~~~~~~~~~~L~~~l~---~~~~~vr~~a~~aL~  295 (318)
                      .++|...  ++...   ..++..|-.+.....+..|...+.   ..++.+|..++.-|.
T Consensus       102 ~QlL~td--d~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  102 VQLLQTD--DPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             HHHTT-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HHHHhcc--cHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            8888754  55444   344555555555566777776554   467788888887764

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=91.15  E-value=1.9  Score=40.83  Aligned_cols=92  Identities=17%  Similarity=0.222  Sum_probs=66.4

Q ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHhccCC------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC------hhhHH
Q 021051          206 EAVSAIIDSLGATSALLKHEVAYVLGQLQN------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD------DQSIG  273 (318)
Q Consensus       206 ~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~------~~~~~  273 (318)
                      +....|+...+ .+...+.-|...+.++-.      ..++..++++.+|.  +..||..|++.|..+..      +...+
T Consensus        23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDe--d~~iR~~aik~lp~~ck~~~~~v~kvaD   99 (556)
T PF05918_consen   23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDE--DVQIRKQAIKGLPQLCKDNPEHVSKVAD   99 (556)
T ss_dssp             HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-S--SHHHHHHHHHHGGGG--T--T-HHHHHH
T ss_pred             HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcc--cHHHHHHHHHhHHHHHHhHHHHHhHHHH
Confidence            44555665555 468888888888887532      46899999999987  89999999999999974      34788


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          274 LLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       274 ~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      .|.+++..+++.....+-.+|..+-..
T Consensus       100 vL~QlL~tdd~~E~~~v~~sL~~ll~~  126 (556)
T PF05918_consen  100 VLVQLLQTDDPVELDAVKNSLMSLLKQ  126 (556)
T ss_dssp             HHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence            899999998888888888888655433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=91.04  E-value=0.55  Score=44.80  Aligned_cols=59  Identities=15%  Similarity=0.114  Sum_probs=37.9

Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALGAIG--------LESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      .+|.|+++++  ..|..+|..-+.-+-...        +..++|.+.. ...|.++.+|..++.++..+.
T Consensus       331 i~p~l~kLF~--~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~-G~~DTn~~Lre~Tlksm~~La  397 (690)
T KOG1243|consen  331 IIPVLLKLFK--SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVAL-GFLDTNATLREQTLKSMAVLA  397 (690)
T ss_pred             hhhhHHHHhc--CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHh-hcccCCHHHHHHHHHHHHHHH
Confidence            5667777777  667777766666554432        2345666666 556777777777777776655

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.95  E-value=11  Score=33.35  Aligned_cols=129  Identities=19%  Similarity=0.198  Sum_probs=84.3

Q ss_pred             ccHHHHHHHHcCCCcChHHH---HHHHHHHHhCCCh----------hHHHHHHHHh--CCCCHHHHHHHHHHHhccC---
Q 021051          173 SSVDMLREVLLGEEKGMYER---YAALFALRNHGGD----------EAVSAIIDSL--GATSALLKHEVAYVLGQLQ---  234 (318)
Q Consensus       173 ~~~~~L~~~l~~~~~~~~~r---~~a~~~L~~~~~~----------~~~~~l~~~l--~d~~~~vr~~a~~~L~~~~---  234 (318)
                      ..+..|++.+.|.+..- .|   ..++..|..+...          ...+.|+.++  ..++|.|..+++.++.-+.   
T Consensus       283 GGl~tl~~~i~d~n~~~-~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~  361 (461)
T KOG4199|consen  283 GGLDTLLRCIDDSNEQG-NRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRS  361 (461)
T ss_pred             cCHHHHHHHHhhhchhh-HHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcC
Confidence            36888999998855542 34   3456666666332          3345555543  3457888877766665432   


Q ss_pred             --------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----------hhhHHHHHHhhcCCCHHHHHHHHHHHHh
Q 021051          235 --------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD----------DQSIGLLKEFAKDPEPIVSQSCEVALSM  296 (318)
Q Consensus       235 --------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~  296 (318)
                              +..+....++.++.-+....|++.|++.+.++-.          ...++.|+...+..++.++..|..||.-
T Consensus       362 pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRD  441 (461)
T KOG4199|consen  362 PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRD  441 (461)
T ss_pred             cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHh
Confidence                    1234566777777544467899999999988741          1236667777777888899999999887


Q ss_pred             chhhhc
Q 021051          297 LEYEQL  302 (318)
Q Consensus       297 l~~~~~  302 (318)
                      ++-..-
T Consensus       442 LGc~v~  447 (461)
T KOG4199|consen  442 LGCDVY  447 (461)
T ss_pred             cCcchh
Confidence            765443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.95  E-value=2  Score=41.81  Aligned_cols=126  Identities=24%  Similarity=0.264  Sum_probs=92.9

Q ss_pred             CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CChHHHHHHhcc-C-CCHHHHHHHHHHHhcc-------
Q 021051           13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PGPRDALIRATK-D-SSNLLAHEAAFALGQM-------   76 (318)
Q Consensus        13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~~~~~L~~~l~-d-~~~~vr~~a~~aL~~~-------   76 (318)
                      ...++++.|++.+.+..- .+.|..|++.|..+..       ...++.|++.|. | .|+.+-..++..+..+       
T Consensus        19 s~aETI~kLcDRvessTL-~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   19 SAAETIEKLCDRVESSTL-LEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             cHHhHHHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            456899999999998875 5889999998876543       245667777773 2 3566666666655321       


Q ss_pred             ---------------------CCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-------------CCCcHHHHHhhh
Q 021051           77 ---------------------QDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-------------LESNIPLLKNSL  122 (318)
Q Consensus        77 ---------------------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------------~~~~~~~L~~~l  122 (318)
                                           ...+.+..|+..+.  +.|-+||..++..+..+-             .|..+..|.. +
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e--~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd-l  174 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE--EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD-L  174 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH--hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH-H
Confidence                                 12356778888888  899999999999887642             3667788888 6


Q ss_pred             ccCCCHHHHHHHHHHHHHHH
Q 021051          123 VSDPAQEVRETCELALERIE  142 (318)
Q Consensus       123 ~~d~~~~vr~~a~~aL~~~~  142 (318)
                      +.|....+|..++.-|..+-
T Consensus       175 L~DsrE~IRNe~iLlL~eL~  194 (970)
T KOG0946|consen  175 LRDSREPIRNEAILLLSELV  194 (970)
T ss_pred             HhhhhhhhchhHHHHHHHHH
Confidence            68989999998888877664

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.83  E-value=4.5  Score=39.87  Aligned_cols=160  Identities=21%  Similarity=0.164  Sum_probs=100.0

Q ss_pred             HHHHHHhcc-CCCHHHHHHHHHHHhcc---C---------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-------
Q 021051           51 RDALIRATK-DSSNLLAHEAAFALGQM---Q---------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-------  110 (318)
Q Consensus        51 ~~~L~~~l~-d~~~~vr~~a~~aL~~~---~---------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------  110 (318)
                      +..|++.|. ..|+..+..++.-|.++   +         .+..+|.|+.+|. .+-++.+-..|+++|.++.       
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~-~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLS-HEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHhhccchh
Confidence            444555554 44888888887776552   2         2357899999999 3456899999999998875       


Q ss_pred             ----CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCC
Q 021051          111 ----LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEE  186 (318)
Q Consensus       111 ----~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  186 (318)
                          +..++|.|.+-|..=.--.|-..+..+|..+. ..|...    +|+               ..++...+.++.  -
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iS-R~H~~A----iL~---------------AG~l~a~LsylD--F  305 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKIS-RRHPKA----ILQ---------------AGALSAVLSYLD--F  305 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHH-hhccHH----HHh---------------cccHHHHHHHHH--H
Confidence                34578888876766566677778888888776 222211    111               123444444441  1


Q ss_pred             cChHHHHHHHHHHHhCCC----------hhHHHHHHHHhCCCCHHHHHHHHHHHhcc
Q 021051          187 KGMYERYAALFALRNHGG----------DEAVSAIIDSLGATSALLKHEVAYVLGQL  233 (318)
Q Consensus       187 ~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~  233 (318)
                      -.+.+++.|+....+.+.          .+++|.|..+|...+.......+.++.++
T Consensus       306 FSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri  362 (1051)
T KOG0168|consen  306 FSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRI  362 (1051)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence            122346666666665542          37888888888766655555555555544

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.76  E-value=5.8  Score=36.58  Aligned_cols=143  Identities=15%  Similarity=0.119  Sum_probs=65.4

Q ss_pred             HHHhccCCCCcHHHHHHhhhcC-CCCHHHHHHHHHHHHhcCCCCc----------HHHHHhhhccCCCHHHHHHHHHHHH
Q 021051           71 FALGQMQDAEAIPALEAVLNDF-SLHPIVRHEAAEALGAIGLESN----------IPLLKNSLVSDPAQEVRETCELALE  139 (318)
Q Consensus        71 ~aL~~~~~~~~~~~L~~~l~~~-~~~~~vR~~a~~~L~~~~~~~~----------~~~L~~~l~~d~~~~vr~~a~~aL~  139 (318)
                      +..+..++...-..+.+++... +..+.-|..-+..++.+..+..          +..+.. =..||+..+|..++.+|+
T Consensus       205 r~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~-ka~dp~a~~r~~a~r~L~  283 (533)
T KOG2032|consen  205 RFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLAN-KATDPSAKSRGMACRGLG  283 (533)
T ss_pred             HHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHH-hccCchhHHHHHHHHHHH
Confidence            3344444544444444444421 1223445555555554433222          122222 235677777777777777


Q ss_pred             HHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----h-------hHH
Q 021051          140 RIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----D-------EAV  208 (318)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----~-------~~~  208 (318)
                      +...   ..+..        ..+.       ....+..++..|.|++.. .|...++.+|..+-.    .       ...
T Consensus       284 ~~as---~~P~k--------v~th-------~~~~ldaii~gL~D~~~~-~V~leam~~Lt~v~~~~~~~~l~~~~l~ia  344 (533)
T KOG2032|consen  284 NTAS---GAPDK--------VRTH-------KTTQLDAIIRGLYDDLNE-EVQLEAMKCLTMVLEKASNDDLESYLLNIA  344 (533)
T ss_pred             HHhc---cCcHH--------HHHh-------HHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHhhhhcchhhhchhHH
Confidence            6651   00000        0000       112345555555555442 356666666655421    1       222


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHhcc
Q 021051          209 SAIIDSLGATSALLKHEVAYVLGQL  233 (318)
Q Consensus       209 ~~l~~~l~d~~~~vr~~a~~~L~~~  233 (318)
                      -.++.++.+.++.+|.+++..+|.+
T Consensus       345 lrlR~l~~se~~~~R~aa~~Lfg~L  369 (533)
T KOG2032|consen  345 LRLRTLFDSEDDKMRAAAFVLFGAL  369 (533)
T ss_pred             HHHHHHHHhcChhhhhhHHHHHHHH
Confidence            2334445556666666666555543

>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4

Probab=90.66  E-value=0.93  Score=34.74  Aligned_cols=106  Identities=25%  Similarity=0.215  Sum_probs=64.3

Q ss_pred             CccHHHHHHHHcCCCcChHHHHHHHHHHHhC---CChhHH----HHHHHHhC---CCCHHHHHHHHHHHhccCCcchHHH
Q 021051          172 CSSVDMLREVLLGEEKGMYERYAALFALRNH---GGDEAV----SAIIDSLG---ATSALLKHEVAYVLGQLQNKAASAA  241 (318)
Q Consensus       172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~---~~~~~~----~~l~~~l~---d~~~~vr~~a~~~L~~~~~~~~~~~  241 (318)
                      .+....|+++|+++....  ....+..|.+-   |.+++.    ..|....+   ...---+..|+..||.|.....+..
T Consensus        21 a~Qt~~lielLk~~~~~~--~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYNV~~   98 (154)
T PF11791_consen   21 AEQTAELIELLKNPPAGE--EAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYNVQP   98 (154)
T ss_dssp             HHHHHHHHHHHHS--TT---HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTTHHH
T ss_pred             HHHHHHHHHHHhCCCCcc--HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCcHHH
Confidence            456778899998877653  66677777665   222222    22222222   2233447789999999998888999


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHhccCC-hhhHHHHHHhhcC
Q 021051          242 LSDVLRNVNEHPMVRHEAAEALGSIAD-DQSIGLLKEFAKD  281 (318)
Q Consensus       242 L~~~l~~~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~~  281 (318)
                      |++++.+.  +..+...|+++|...-- -++..-+..+.+.
T Consensus        99 LI~~L~~~--d~~lA~~Aa~aLk~TlLvyDaf~dv~~~ak~  137 (154)
T PF11791_consen   99 LIDLLKSD--DEELAEEAAEALKNTLLVYDAFNDVAELAKA  137 (154)
T ss_dssp             HHHGG--G---TTTHHHHHHHHHT--TTCCHHHHHHHHHHT
T ss_pred             HHHHHcCC--cHHHHHHHHHHHHhhHHHHhhHHHHHHHHHc
Confidence            99999876  78899999999988531 1235555555555

2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=90.28  E-value=7.5  Score=40.92  Aligned_cols=63  Identities=16%  Similarity=0.222  Sum_probs=42.6

Q ss_pred             chHHHHHHHHhccCCCHHHHHHHHHHHhccC-----------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051          237 AASAALSDVLRNVNEHPMVRHEAAEALGSIA-----------DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQ  301 (318)
Q Consensus       237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~  301 (318)
                      ..+..|++.|+..  .-.+--+++-+|.++.           +..+++.|..++.+.+..+..-...||.++-.+.
T Consensus       530 NCLq~LLQ~LKS~--SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  530 NCLQTLLQHLKSH--SLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hHHHHHHHHhhhc--ceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            3556666666654  4555555666666553           3457888888888888888888888888776655

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=89.76  E-value=1.6  Score=39.79  Aligned_cols=124  Identities=18%  Similarity=0.146  Sum_probs=82.1

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC----------ChHHHHHHhccCCCHHHHHHHHH----HHhccCCCC
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKGP----------GPRDALIRATKDSSNLLAHEAAF----ALGQMQDAE   80 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~----aL~~~~~~~   80 (318)
                      .+.+..+.+.|.+.. +...|..|++.|+++...          -++..+++.-+|.++.+-..|..    .+..+....
T Consensus       328 ~~iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~  406 (516)
T KOG2956|consen  328 AEILLLLLEVLSDSE-DEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ  406 (516)
T ss_pred             HHHHHHHHHHHccch-hhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh
Confidence            455667788888833 238999999999987541          23444444456776655444443    355555667


Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHHhc----C-------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALGAI----G-------LESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~----~-------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      .+..+..++.  ..|...-..++..+-++    .       -++..|.+++.+ ......||+.++.+|..+-
T Consensus       407 ~I~~i~~~Il--t~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay-~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  407 CIVNISPLIL--TADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAY-DSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             HHHHHhhHHh--cCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHh-cCchHHhhhhHHHhHHHHH
Confidence            7888888888  34444444556544433    2       256788888855 6778999999999998664

>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases

Probab=89.53  E-value=4.5  Score=32.13  Aligned_cols=92  Identities=17%  Similarity=0.042  Sum_probs=64.7

Q ss_pred             CCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhc
Q 021051           47 GPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLV  123 (318)
Q Consensus        47 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~  123 (318)
                      .|.+.+.+....+-.++.-...+...|..... -....-+++|...=+|+.||..|++.|..+++.+   .++.|++++.
T Consensus        37 ~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~-i~~~~aLeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLK  115 (171)
T cd00872          37 KPQALPKLLLSVKWNKRDDVAQMYQLLKRWPK-LKPEQALELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLK  115 (171)
T ss_pred             CcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCC-CCHHHHHHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            47788888887777777777778888887766 4445556666644467999999999999988765   4677777665


Q ss_pred             cCC---CHHHHHHHHHHHH
Q 021051          124 SDP---AQEVRETCELALE  139 (318)
Q Consensus       124 ~d~---~~~vr~~a~~aL~  139 (318)
                      .++   ++-++.-.-+++.
T Consensus       116 yE~~~ds~La~FLl~Ral~  134 (171)
T cd00872         116 YEPYHDSDLVRFLLKRALR  134 (171)
T ss_pred             cccccCCHHHHHHHHHHhc
Confidence            554   4555555555554

Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=89.49  E-value=4.4  Score=38.29  Aligned_cols=177  Identities=23%  Similarity=0.173  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHhcC--CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccH
Q 021051           98 VRHEAAEALGAIG--LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSV  175 (318)
Q Consensus        98 vR~~a~~~L~~~~--~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  175 (318)
                      ++.+.++.|+...  +.+.+..++- ...|++..|-..+...|.++.-                 .       +.++..+
T Consensus       220 ~K~~il~fL~sg~f~d~~~~~~~li-Asad~~~~V~~~ae~~LKr~~~-----------------~-------~ed~~~V  274 (501)
T PF13001_consen  220 RKLAILKFLASGFFPDEERFPPLLI-ASADSNSSVSDRAEDLLKRLSV-----------------S-------LEDPDLV  274 (501)
T ss_pred             HHHHHHHHHHhcCCCcHhHHhheee-EEeCCcchHHHHHHHHHhhcCC-----------------C-------CCCHHHH
Confidence            5666666666543  3234444443 3478888999999999988761                 0       2235567


Q ss_pred             HHHHHHHc--C-------CCcChHHHHHHHHHHHhC-----CChhHHHHHHHHhCCC--CHHHHHHHHHHH---hccC--
Q 021051          176 DMLREVLL--G-------EEKGMYERYAALFALRNH-----GGDEAVSAIIDSLGAT--SALLKHEVAYVL---GQLQ--  234 (318)
Q Consensus       176 ~~L~~~l~--~-------~~~~~~~r~~a~~~L~~~-----~~~~~~~~l~~~l~d~--~~~vr~~a~~~L---~~~~--  234 (318)
                      ..|+.+..  .       +..+..+|...+..|.+-     ..+..+..+...+.++  +..+|..++..+   ....  
T Consensus       275 ~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~  354 (501)
T PF13001_consen  275 DRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKH  354 (501)
T ss_pred             HHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhh
Confidence            77777776  2       011223466666666543     2245556666666666  566666666666   2221  


Q ss_pred             -CcchHHHHHHH--------Hh------ccCCCHHHHHHHHHHHhccC---------ChhhHHHHHHhhcCCCHHHHHHH
Q 021051          235 -NKAASAALSDV--------LR------NVNEHPMVRHEAAEALGSIA---------DDQSIGLLKEFAKDPEPIVSQSC  290 (318)
Q Consensus       235 -~~~~~~~L~~~--------l~------~~~~~~~vr~~a~~aL~~~~---------~~~~~~~L~~~l~~~~~~vr~~a  290 (318)
                       .+..+..+...        +.      ...++..+|..+.++||.++         +-..+..|.+.+.++.+++|..+
T Consensus       355 ~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sI  434 (501)
T PF13001_consen  355 ISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSI  434 (501)
T ss_pred             cCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHH
Confidence             12222222222        21      12247889999999999986         23467888888888999999999


Q ss_pred             HHHHHhchh
Q 021051          291 EVALSMLEY  299 (318)
Q Consensus       291 ~~aL~~l~~  299 (318)
                      ..||..+..
T Consensus       435 qeALssl~~  443 (501)
T PF13001_consen  435 QEALSSLAP  443 (501)
T ss_pred             HHHHHHHHH
Confidence            999987754

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.32  E-value=1.1  Score=38.63  Aligned_cols=124  Identities=18%  Similarity=0.221  Sum_probs=66.3

Q ss_pred             CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC---
Q 021051           13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA---   79 (318)
Q Consensus        13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---   79 (318)
                      -++..+......|.+++  |.....++..+..+..          .+.+-.+.+-+++....|-.+|+.+++.+-..   
T Consensus        85 ~p~~al~~~l~~L~s~d--W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~  162 (334)
T KOG2933|consen   85 DPEAALKQALKKLSSDD--WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN  162 (334)
T ss_pred             cHHHHHHHHHHHhchHH--HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666777664  7777777777664422          12344444555666667777777777654310   


Q ss_pred             ---CcHHHH-HHhhh-cCCCCHHHHHHHHHHHHhcCCC----CcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051           80 ---EAIPAL-EAVLN-DFSLHPIVRHEAAEALGAIGLE----SNIPLLKNSLVSDPAQEVRETCELALE  139 (318)
Q Consensus        80 ---~~~~~L-~~~l~-~~~~~~~vR~~a~~~L~~~~~~----~~~~~L~~~l~~d~~~~vr~~a~~aL~  139 (318)
                         +..+.+ ..++. ...++.+||..|-.+|..+-++    ..++.|+. .....++.+|..+...+.
T Consensus       163 ~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~-~~~~~n~r~r~~a~~~~~  230 (334)
T KOG2933|consen  163 SIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIP-ILQHSNPRVRAKAALCFS  230 (334)
T ss_pred             HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHH-HHhhhchhhhhhhhcccc
Confidence               112222 22222 1134566777777766655332    23455555 335556666655554443

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=89.31  E-value=7.4  Score=39.37  Aligned_cols=93  Identities=24%  Similarity=0.289  Sum_probs=60.6

Q ss_pred             ChHHHHHHhccCCCHHHHHHHHHHHhccCCC-------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC---------C
Q 021051           49 GPRDALIRATKDSSNLLAHEAAFALGQMQDA-------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL---------E  112 (318)
Q Consensus        49 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~---------~  112 (318)
                      .+++.|.+.++|.+..||.-|+..+|++...       .++..+.+++.. -+++..-++++-+|+.++-         +
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p-~e~~~aWHgacLaLAELA~rGlLlps~l~  419 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNP-AEDDSAWHGACLALAELALRGLLLPSLLE  419 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCc-CCchhHHHHHHHHHHHHHhcCCcchHHHH
Confidence            3566777778999999999999999997742       345555665552 3344444588888887753         2


Q ss_pred             CcHHHHHhhhccC-------CCHHHHHHHHHHHHHHH
Q 021051          113 SNIPLLKNSLVSD-------PAQEVRETCELALERIE  142 (318)
Q Consensus       113 ~~~~~L~~~l~~d-------~~~~vr~~a~~aL~~~~  142 (318)
                      +++|.+.+.+.-|       ....||.+|....=.+.
T Consensus       420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~  456 (1133)
T KOG1943|consen  420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFA  456 (1133)
T ss_pred             HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHH
Confidence            4566666645433       23567777765544433

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=89.26  E-value=0.67  Score=26.53  Aligned_cols=28  Identities=29%  Similarity=0.254  Sum_probs=19.7

Q ss_pred             hhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051          270 QSIGLLKEFAKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       270 ~~~~~L~~~l~~~~~~vr~~a~~aL~~l  297 (318)
                      ++++.|.+++.++++.++..++++|.++
T Consensus        12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl   39 (41)
T smart00185       12 GGLPALVELLKSEDEEVVKEAAWALSNL   39 (41)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            3567777777766777777777777665

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=89.03  E-value=23  Score=34.27  Aligned_cols=68  Identities=16%  Similarity=0.267  Sum_probs=52.7

Q ss_pred             CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC--Ch--hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcc
Q 021051          234 QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA--DD--QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLE  303 (318)
Q Consensus       234 ~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~--~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~  303 (318)
                      +..-++-.+-..+.-.  .+.+|++.=.++|-+.  +|  +..+.|.++..|.+.+|...++.|++.++-++..
T Consensus       637 g~eM~lR~f~h~l~yg--e~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnN  708 (878)
T KOG2005|consen  637 GSEMVLRHFGHLLHYG--EPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNN  708 (878)
T ss_pred             hhHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHHHHHHhccccCCcch
Confidence            3344555566666654  7899999888888774  44  4789999999999999999999999999877653

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.56  E-value=21  Score=33.20  Aligned_cols=264  Identities=15%  Similarity=0.114  Sum_probs=140.6

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccC---C-------CChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLK---G-------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------   78 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~---~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------   78 (318)
                      ...+..|.+.|.-.+.  ..-...+..|.++.   .       ...++.|.+++...++.+|...+..+-.+..      
T Consensus       303 kniV~mLVKaLdr~n~--~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~  380 (791)
T KOG1222|consen  303 KNIVAMLVKALDRSNS--SLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP  380 (791)
T ss_pred             HhHHHHHHHHHcccch--HHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence            4466777777876664  45555555554432   1       3578888888888888999888888866552      


Q ss_pred             ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc-------CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc
Q 021051           79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAI-------GLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKAS  147 (318)
Q Consensus        79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~-------~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~  147 (318)
                          ...+|.+..++.+ +....+-...+.-++.-       ...+.++.+.+.+....+..|-...+.--.++.  .+.
T Consensus       381 KMv~~GllP~l~~ll~~-d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~--lnk  457 (791)
T KOG1222|consen  381 KMVNGGLLPHLASLLDS-DTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLC--LNK  457 (791)
T ss_pred             HHhhccchHHHHHHhCC-cccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH--hcc
Confidence                2467888888882 33333333333333221       124566777766665556666554443333333  000


Q ss_pred             CccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC---h---hHHHHHHHHh-CCCCH
Q 021051          148 GSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG---D---EAVSAIIDSL-GATSA  220 (318)
Q Consensus       148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~---~---~~~~~l~~~l-~d~~~  220 (318)
                      ..         ...       ....+.+..|.+..-...+..  -...+..+.....   .   +.+..|...+ ++.+.
T Consensus       458 RN---------aQl-------vceGqgL~~LM~ra~k~~D~l--LmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E  519 (791)
T KOG1222|consen  458 RN---------AQL-------VCEGQGLDLLMERAIKSRDLL--LMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSE  519 (791)
T ss_pred             cc---------ceE-------EecCcchHHHHHHHhcccchH--HHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchH
Confidence            00         000       001233444444332222222  2222222222211   1   2223333333 45666


Q ss_pred             HHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----------hhhHHHHHHhh
Q 021051          221 LLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD----------DQSIGLLKEFA  279 (318)
Q Consensus       221 ~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l  279 (318)
                      ..-.+++..|+.++-           ...+|++...+.......++....+.++|....          ...++.|++++
T Consensus       520 ~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL  599 (791)
T KOG1222|consen  520 SFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELL  599 (791)
T ss_pred             HHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHH
Confidence            667777777777653           456788888886433234577778888887652          34677788776


Q ss_pred             cC---CCHHHHHHHHHHHHhchhhhc
Q 021051          280 KD---PEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       280 ~~---~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      +.   +++.|-+ .+....++-.+++
T Consensus       600 ~a~QeDDEfV~Q-iiyVF~Q~l~He~  624 (791)
T KOG1222|consen  600 QACQEDDEFVVQ-IIYVFLQFLKHEL  624 (791)
T ss_pred             HhhcccchHHHH-HHHHHHHHHHHHH
Confidence            43   4455544 4444444444444

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=88.42  E-value=4  Score=40.51  Aligned_cols=133  Identities=20%  Similarity=0.179  Sum_probs=84.6

Q ss_pred             CcHHHHHHhhhcCCCCHHHHHHHHHHHHh----cC-------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 021051           80 EAIPALEAVLNDFSLHPIVRHEAAEALGA----IG-------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG  148 (318)
Q Consensus        80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~----~~-------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~  148 (318)
                      +.+|.|+...+  ..+...|..-+.+|++    .+       -+...|.|.+ .+.=+|..||-.+...+.-+-.  .+.
T Consensus       867 ~ivP~l~~~~~--t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq-~Ls~~D~~v~vstl~~i~~~l~--~~~  941 (1030)
T KOG1967|consen  867 DIVPILVSKFE--TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQ-ALSMPDVIVRVSTLRTIPMLLT--ESE  941 (1030)
T ss_pred             hhHHHHHHHhc--cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHH-hcCCCccchhhhHhhhhhHHHH--hcc
Confidence            67888888888  5566666666666654    33       2456788888 4577899999888887775541  010


Q ss_pred             ccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCc-ChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhC
Q 021051          149 SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEK-GMYERYAALFALRNHGG-----------DEAVSAIIDSLG  216 (318)
Q Consensus       149 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~-~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~  216 (318)
                      .-..+.                -...+|.++.+=.+.+. ...||..|++.|..+..           ++.+..|++.|.
T Consensus       942 tL~t~~----------------~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld 1005 (1030)
T KOG1967|consen  942 TLQTEH----------------LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD 1005 (1030)
T ss_pred             ccchHH----------------HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC
Confidence            000000                01134445444444443 36689999998877643           477778888888


Q ss_pred             CCCHHHHHHHHHHHhcc
Q 021051          217 ATSALLKHEVAYVLGQL  233 (318)
Q Consensus       217 d~~~~vr~~a~~~L~~~  233 (318)
                      |+--.||.+|+.+=+.|
T Consensus      1006 DkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 1006 DKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             cHHHHHHHHHHHHhhhh
Confidence            88888888888776554

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=88.23  E-value=0.8  Score=32.25  Aligned_cols=53  Identities=15%  Similarity=0.107  Sum_probs=37.2

Q ss_pred             CCCHHHHHHHHHHHhccCC----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh
Q 021051          217 ATSALLKHEVAYVLGQLQN----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD  269 (318)
Q Consensus       217 d~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~  269 (318)
                      +++|.+|..|+..|+.+..          +.....+.+.+.|++.+....+.|+.+|..+|..
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~   79 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPE   79 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            3467777777777776532          2455666666776655778999999999999654

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=87.90  E-value=17  Score=33.47  Aligned_cols=59  Identities=15%  Similarity=0.149  Sum_probs=34.0

Q ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051          206 EAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSI  266 (318)
Q Consensus       206 ~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~  266 (318)
                      ..+|.+.+.++..+...|..-+.+|..+=.           +..+|.|++.+.-+  |+.++.++++.|..+
T Consensus       323 ~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~  392 (415)
T PF12460_consen  323 QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP--DADVLLSSLETLKMI  392 (415)
T ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH
Confidence            345666666655554455555555544311           34567777777654  666777766666655

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=87.72  E-value=1.2  Score=32.80  Aligned_cols=29  Identities=17%  Similarity=0.171  Sum_probs=21.4

Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051          271 SIGLLKEFAKDPEPIVSQSCEVALSMLEY  299 (318)
Q Consensus       271 ~~~~L~~~l~~~~~~vr~~a~~aL~~l~~  299 (318)
                      +...+.+++..+++.||.+|..+++++-.
T Consensus        87 ~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   87 AKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            45667777888888888888888887654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=87.56  E-value=30  Score=33.90  Aligned_cols=95  Identities=17%  Similarity=0.110  Sum_probs=72.8

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccC--C---------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-----
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLK--G---------PGPRDALIRATKDSSNLLAHEAAFALGQMQD-----   78 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~--~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----   78 (318)
                      +-.+++.+.+|.+.++  .++..|...+..+.  +         -..++.|+.+|.+++..|+..|+.+|-.+-.     
T Consensus       232 d~~lpe~i~mL~~q~~--~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~  309 (717)
T KOG1048|consen  232 DPTLPEVISMLMSQDP--SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTD  309 (717)
T ss_pred             ccccHHHHHHHhccCh--hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCc
Confidence            4467788888888887  67777777766543  2         2568889999999999999999999976542     


Q ss_pred             --------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC
Q 021051           79 --------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE  112 (318)
Q Consensus        79 --------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~  112 (318)
                              ...++.++.++. ..-|..||....-.|.++...
T Consensus       310 ~NKlai~~~~Gv~~l~~~Lr-~t~D~ev~e~iTg~LWNLSS~  350 (717)
T KOG1048|consen  310 SNKLAIKELNGVPTLVRLLR-HTQDDEVRELITGILWNLSSN  350 (717)
T ss_pred             ccchhhhhcCChHHHHHHHH-hhcchHHHHHHHHHHhcccch
Confidence                    245888899998 247888998888888877644

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=87.15  E-value=11  Score=37.68  Aligned_cols=124  Identities=12%  Similarity=0.111  Sum_probs=88.1

Q ss_pred             cHHHHHHHHcCCCcChHHHHHHHHHHHhC----C-------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-------
Q 021051          174 SVDMLREVLLGEEKGMYERYAALFALRNH----G-------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN-------  235 (318)
Q Consensus       174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~-------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-------  235 (318)
                      .+|.|...+......  +|..-+.+|.+.    .       .+...|.|++++.=+|..+|......+-..-.       
T Consensus       868 ivP~l~~~~~t~~~~--~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t  945 (1030)
T KOG1967|consen  868 IVPILVSKFETAPGS--QKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT  945 (1030)
T ss_pred             hHHHHHHHhccCCcc--chhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence            467777777622222  366666666543    1       14677888999988898898888777754321       


Q ss_pred             ---cchHHHHHHHHhccCCC-HHHHHHHHHHHhccCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051          236 ---KAASAALSDVLRNVNEH-PMVRHEAAEALGSIAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEY  299 (318)
Q Consensus       236 ---~~~~~~L~~~l~~~~~~-~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~  299 (318)
                         ...+|.++.+-.+.+.+ -.||..|++.|+.+..           +..+..|.+.+.|+-+.||.+|..+=+.|..
T Consensus       946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen  946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred             HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence               23456666665655322 6799999999988753           5789999999999999999999998776644

>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases

Probab=87.08  E-value=4.9  Score=31.91  Aligned_cols=18  Identities=11%  Similarity=0.180  Sum_probs=9.1

Q ss_pred             CHHHHHHHHHHHhccCCc
Q 021051          219 SALLKHEVAYVLGQLQNK  236 (318)
Q Consensus       219 ~~~vr~~a~~~L~~~~~~  236 (318)
                      ++.||..|+..|..+.+.
T Consensus        84 d~~VR~yAV~~L~~~sd~  101 (171)
T cd00872          84 DEHVREFAVRCLEKLSDD  101 (171)
T ss_pred             CHHHHHHHHHHHHhCCHH
Confidence            345555555555555544

Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.82  E-value=4.3  Score=39.15  Aligned_cols=141  Identities=18%  Similarity=0.081  Sum_probs=89.4

Q ss_pred             HHHHHhhhcCCCCHHHHHHHHHHHHhc---CCCCc------------HHHHHhhhccCCCHHHHHHHHHHHHHHHh--hh
Q 021051           83 PALEAVLNDFSLHPIVRHEAAEALGAI---GLESN------------IPLLKNSLVSDPAQEVRETCELALERIEK--LK  145 (318)
Q Consensus        83 ~~L~~~l~~~~~~~~vR~~a~~~L~~~---~~~~~------------~~~L~~~l~~d~~~~vr~~a~~aL~~~~~--~~  145 (318)
                      |.|...|+  .++..||..|+..+-..   .+|+.            ...|.+ ++.|+-|.||..|...+.++-.  |.
T Consensus       177 p~l~R~L~--a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~-LL~d~~p~VRS~a~~gv~k~~s~fWe  253 (1005)
T KOG1949|consen  177 PILWRGLK--ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYS-LLEDPYPMVRSTAILGVCKITSKFWE  253 (1005)
T ss_pred             HHHHHhhc--cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            44555566  78999999999988653   34443            345666 6789999999999999887641  22


Q ss_pred             ccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC---CCcChHHHHHHHHHHHhCCC--------hhHHHHHHHH
Q 021051          146 ASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG---EEKGMYERYAALFALRNHGG--------DEAVSAIIDS  214 (318)
Q Consensus       146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~---~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~  214 (318)
                      --.                       +..+..|+..+.+   .+....||....+.|..+-.        +..+|.+...
T Consensus       254 ~iP-----------------------~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~  310 (1005)
T KOG1949|consen  254 MIP-----------------------PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYS  310 (1005)
T ss_pred             HcC-----------------------HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchh
Confidence            111                       1123333332221   12222468888877766532        2444555566


Q ss_pred             hCCCCHHHHHHHHHHHhccCCcch--------HHHHHHHHhcc
Q 021051          215 LGATSALLKHEVAYVLGQLQNKAA--------SAALSDVLRNV  249 (318)
Q Consensus       215 l~d~~~~vr~~a~~~L~~~~~~~~--------~~~L~~~l~~~  249 (318)
                      +.|+...||.+++..|-.+++..+        ++.++..+...
T Consensus       311 l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d  353 (1005)
T KOG1949|consen  311 LHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETD  353 (1005)
T ss_pred             hhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhcc
Confidence            678999999999999999886443        35555555543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=86.26  E-value=28  Score=32.17  Aligned_cols=268  Identities=13%  Similarity=0.026  Sum_probs=137.3

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CChHH----HHHHhccCC-CHHHHHHHHHHHhccC------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PGPRD----ALIRATKDS-SNLLAHEAAFALGQMQ------   77 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~~~~----~L~~~l~d~-~~~vr~~a~~aL~~~~------   77 (318)
                      ..-..+..+|..++  +.+...++..+..+-.       ....+    -|...++.. +...+..++.+|+.+-      
T Consensus       101 ~~~~~fl~lL~~~d--~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R  178 (429)
T cd00256         101 KTWEPFFNLLNRQD--QFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR  178 (429)
T ss_pred             cchHHHHHHHcCCc--hhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH
Confidence            34455566776655  3788888888876631       11222    333344332 3445555555554421      


Q ss_pred             ----CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 021051           78 ----DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----------LESNIPLLKNSLVSDPAQEVRETCELALERIEK  143 (318)
Q Consensus        78 ----~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~  143 (318)
                          ....++.|.+++.+...+..+...++.++.-+.          ..+.++.|...+....-+.|-+.+..++.++-+
T Consensus       179 ~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         179 FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence                224788888888832224566666666554332          345778888866666677788888888887761


Q ss_pred             hhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----hhHH-HHHHHH---
Q 021051          144 LKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----DEAV-SAIIDS---  214 (318)
Q Consensus       144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----~~~~-~~l~~~---  214 (318)
                       ..........+        .   ..+-...++.++..|.........-...+..|...=.     -... ++..++   
T Consensus       259 -~~~~~~~~~~~--------~---~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg  326 (429)
T cd00256         259 -KRVDREVKKTA--------A---LQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSG  326 (429)
T ss_pred             -cccccchhhhH--------H---HHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcC
Confidence             10000000000        0   0000112344444444433332222333333322100     0000 111111   


Q ss_pred             -hC----C-CCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC--C---------hhhHHHHHH
Q 021051          215 -LG----A-TSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA--D---------DQSIGLLKE  277 (318)
Q Consensus       215 -l~----d-~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~  277 (318)
                       |.    + +..-++..+-..-  -.+-+.+..|.+++..+ .|+.+-.-|+.-+|.+-  .         -++-..+.+
T Consensus       327 ~L~WSp~H~se~FW~EN~~kf~--~~~~~llk~L~~iL~~s-~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~  403 (429)
T cd00256         327 RLHWSPVHKSEKFWRENADRLN--EKNYELLKILIHLLETS-VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMR  403 (429)
T ss_pred             CccCCCCCCCchHHHHHHHHHH--hcchHHHHHHHHHHhcC-CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHH
Confidence             11    1 1233444444432  12235677888888543 26666666666666652  1         124566788


Q ss_pred             hhcCCCHHHHHHHHHHHHhchhh
Q 021051          278 FAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       278 ~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      ++..+++.||.+|..+++++--+
T Consensus       404 Lm~h~d~~Vr~eAL~avQklm~~  426 (429)
T cd00256         404 LLNHEDPNVRYEALLAVQKLMVH  426 (429)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHh
Confidence            89999999999999999987543

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=85.90  E-value=5.1  Score=31.33  Aligned_cols=121  Identities=19%  Similarity=0.101  Sum_probs=72.4

Q ss_pred             HHHHHHHHcC--CCcChHHHHHHHHHHHhCCC-------hhHHHHHHHHhCCCCHHHHHHHHHHHhcc------------
Q 021051          175 VDMLREVLLG--EEKGMYERYAALFALRNHGG-------DEAVSAIIDSLGATSALLKHEVAYVLGQL------------  233 (318)
Q Consensus       175 ~~~L~~~l~~--~~~~~~~r~~a~~~L~~~~~-------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~------------  233 (318)
                      +..++..+..  ..+.  +|..+.-++.++-+       +...+.+...+.+.+..-...++.++..+            
T Consensus         5 l~~lL~~L~~~~~~~~--~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~   82 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEE--VRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF   82 (157)
T ss_dssp             CCHHHHHHHCTTTSCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred             HHHHHHHhcccCCCHh--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence            4445555543  3334  48877777765521       12223333344333222344455555443            


Q ss_pred             CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC---------hhhHHHHHHhhc-CCCHH-HHHHHHHHHHhc
Q 021051          234 QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD---------DQSIGLLKEFAK-DPEPI-VSQSCEVALSML  297 (318)
Q Consensus       234 ~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~-~~~~~-vr~~a~~aL~~l  297 (318)
                      ..++..+.+...+....++..+...+++.|..-..         .+.++.|.+.++ ++++. +|..|..+|.++
T Consensus        83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen   83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            23667888888888223389999999999887643         356899999885 56666 888888888764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases

Probab=85.62  E-value=9.4  Score=30.16  Aligned_cols=79  Identities=15%  Similarity=0.122  Sum_probs=56.4

Q ss_pred             CCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhc
Q 021051           47 GPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLV  123 (318)
Q Consensus        47 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~  123 (318)
                      .+.+.+.+....+=.++.....+...|..... -....-+++|...=.++.||..|++.|..+++.+   .++.|++++.
T Consensus        44 ~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~-i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLK  122 (166)
T cd00870          44 NKKALTKFLKSVNWSDEQEVKQALELMPKWAK-IDIEDALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALK  122 (166)
T ss_pred             CcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCC-CCHHHHHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            46777777776655566667777788887766 4455556777743468999999999999988755   4677777665


Q ss_pred             cCC
Q 021051          124 SDP  126 (318)
Q Consensus       124 ~d~  126 (318)
                      .+.
T Consensus       123 yE~  125 (166)
T cd00870         123 YEN  125 (166)
T ss_pred             hcc
Confidence            554

Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=85.21  E-value=1.5  Score=24.95  Aligned_cols=28  Identities=32%  Similarity=0.350  Sum_probs=17.9

Q ss_pred             chHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051          237 AASAALSDVLRNVNEHPMVRHEAAEALGSI  266 (318)
Q Consensus       237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~  266 (318)
                      ..++.|++++.+.  ++.++..++++|.++
T Consensus        12 g~i~~L~~ll~~~--~~~i~~~a~~aL~nl   39 (41)
T smart00185       12 GGLPALVELLKSE--DEEVVKEAAWALSNL   39 (41)
T ss_pred             CCHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence            3566666666644  666777777766654

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=85.20  E-value=0.73  Score=34.02  Aligned_cols=58  Identities=17%  Similarity=0.180  Sum_probs=27.3

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--C---------ChHHHHHHhccCCCHHHHHHHHHHHh
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG--P---------GPRDALIRATKDSSNLLAHEAAFALG   74 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~   74 (318)
                      +.+..|+++|..++ |..+-.-|+.-+|.+-.  |         .+...++++++++|+.||..|+.++.
T Consensus        43 ~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ  111 (119)
T PF11698_consen   43 ELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ  111 (119)
T ss_dssp             HHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            46667777774332 12455555555555421  1         23334444445555555555554443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=85.13  E-value=7.7  Score=29.34  Aligned_cols=46  Identities=9%  Similarity=-0.127  Sum_probs=32.9

Q ss_pred             CCHHHHHHHHHHHhcc--CCCChHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051           30 QPISERFRALFSLRNL--KGPGPRDALIRATKDSSNLLAHEAAFALGQ   75 (318)
Q Consensus        30 ~~~~~r~~A~~~l~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~   75 (318)
                      +||..-...+..+...  +..+++..|.+.++++++.++..|+..|..
T Consensus        16 ~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~   63 (133)
T cd03561          16 PDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLEL   63 (133)
T ss_pred             ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            3566666666666554  334678888888888899998888887754

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=85.11  E-value=8.6  Score=31.48  Aligned_cols=121  Identities=21%  Similarity=0.139  Sum_probs=81.4

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhccCCC---ChHHHHHHhccCC-CHHHHHHH-HHHHhccCC--CCcHHHHHHhhh
Q 021051           18 EKFLCDRLVDPTQPISERFRALFSLRNLKGP---GPRDALIRATKDS-SNLLAHEA-AFALGQMQD--AEAIPALEAVLN   90 (318)
Q Consensus        18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~---~~~~~L~~~l~d~-~~~vr~~a-~~aL~~~~~--~~~~~~L~~~l~   90 (318)
                      .+.+.++..++..  +.|..|+..+......   ...+.+..++.+- ++.+-... ...++.+..  +...+.+.+.+.
T Consensus        53 ~~l~~~L~~~~~~--E~~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~~W~~  130 (213)
T PF08713_consen   53 YELADELWESGYR--EERYLALLILDKRRKKLTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHPEALELLEKWAK  130 (213)
T ss_dssp             HHHHHHHHCSSCH--HHHHHHHHHHHHCGGG--HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHGGHHHHHHHHHH
T ss_pred             HHHHHHHcCCchH--HHHHHHHHHhHHHhhhhhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            4455666777765  8999999999764331   2356777777543 55555444 555555421  467788888888


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCCCcHHHHHh---hhccCCCHHHHHHHHHHHHHHH
Q 021051           91 DFSLHPIVRHEAAEALGAIGLESNIPLLKN---SLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        91 ~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~---~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                        ++++.+|+.++..+.........+.+..   ....|++..||++..++|..++
T Consensus       131 --s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~  183 (213)
T PF08713_consen  131 --SDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIG  183 (213)
T ss_dssp             --CSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHC
T ss_pred             --CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence              8999999999877765443333333222   2457899999999999999887

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>KOG1932 consensus TATA binding protein associated factor [Transcription]

Probab=84.90  E-value=50  Score=33.98  Aligned_cols=59  Identities=22%  Similarity=0.146  Sum_probs=33.5

Q ss_pred             HHHHhc-cCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC
Q 021051           53 ALIRAT-KDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL  111 (318)
Q Consensus        53 ~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~  111 (318)
                      .....| .|.|..-+..|++.|...........|...+.+..-...+|..|+.+|++...
T Consensus       646 Mw~~QLr~drDVvAQ~EAI~~le~~p~~~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~  705 (1180)
T KOG1932|consen  646 MWVYQLRQDRDVVAQMEAIESLEALPSTASRSALTRTLEDERYFYRIRIAAAFALAKTAN  705 (1180)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHcCCcchhHHHHHHHHhhcchhhHHHHHHHHHHHHhhc
Confidence            333344 45566666666666666665555566666666323335666666666665543

>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases

Probab=84.72  E-value=7.4  Score=30.76  Aligned_cols=68  Identities=15%  Similarity=0.202  Sum_probs=38.0

Q ss_pred             ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhH
Q 021051          204 GDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSI  272 (318)
Q Consensus       204 ~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~  272 (318)
                      .+.+++.+....+=.++.-..++...|..+...+.... ++++...-.++.||.-|++.|..+++++..
T Consensus        44 ~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~a-LeLL~~~f~~~~VR~yAV~~L~~~sd~eL~  111 (166)
T cd00870          44 NKKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDA-LELLSPYFTNPVVRKYAVSRLKLASDEELL  111 (166)
T ss_pred             CcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHH-HHHcCccCCCHHHHHHHHHHHHhCCHHHHH
Confidence            45566666555544455555566666666665443333 333332222567777777777777666543

Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.

>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases

Probab=84.53  E-value=9.5  Score=29.65  Aligned_cols=78  Identities=18%  Similarity=0.165  Sum_probs=55.1

Q ss_pred             CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhcc
Q 021051           48 PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLVS  124 (318)
Q Consensus        48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~~  124 (318)
                      +.+.+.+.+.+.-.++.-...+...|....... ...-+++|...-.++.||..|++.|...++.+   .+|.|++++..
T Consensus        38 p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~-~~~aL~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLky  116 (152)
T cd00864          38 PKALPKLLKSVNWNDDEEVSELYQLLKWWAPLS-PEDALELLSPKYPDPVVRQYAVRVLESASDDELLLYLPQLVQALKY  116 (152)
T ss_pred             hHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCC-HHHHHHHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            567788887777777777788888887765533 44445555533367999999999999887654   46777776655


Q ss_pred             CC
Q 021051          125 DP  126 (318)
Q Consensus       125 d~  126 (318)
                      |+
T Consensus       117 e~  118 (152)
T cd00864         117 EP  118 (152)
T ss_pred             cc
Confidence            54

Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=84.27  E-value=3.3  Score=33.43  Aligned_cols=58  Identities=21%  Similarity=0.255  Sum_probs=34.2

Q ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHhc------CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           82 IPALEAVLNDFSLHPIVRHEAAEALGAI------GLESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~------~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      .+.++++..  +++..+|..|++.+..+      .....+|.|+. |..|+++.+|..|...+..+.
T Consensus        10 l~~Il~~~~--~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIA-L~ts~~~~ir~~A~~~l~~l~   73 (187)
T PF12830_consen   10 LKNILELCL--SSDDSVRLAALQVLELILRQGLVNPKQCVPTLIA-LETSPNPSIRSRAYQLLKELH   73 (187)
T ss_pred             HHHHHHHHh--CCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhh-hhCCCChHHHHHHHHHHHHHH
Confidence            344555555  56666666666666543      12345666666 556666666666666666554

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=84.14  E-value=10  Score=34.94  Aligned_cols=127  Identities=18%  Similarity=0.165  Sum_probs=85.5

Q ss_pred             CccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhH--------HHHHHHHhC-CCCHHHHHHHHHHHhccCC-c-c---
Q 021051          172 CSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEA--------VSAIIDSLG-ATSALLKHEVAYVLGQLQN-K-A---  237 (318)
Q Consensus       172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~--------~~~l~~~l~-d~~~~vr~~a~~~L~~~~~-~-~---  237 (318)
                      ...+..|++++..++....||..+...|..+-..+.        +..|..+.+ ...++..+..+..|+.|-. . +   
T Consensus       179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~  258 (832)
T KOG3678|consen  179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQ  258 (832)
T ss_pred             cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHH
Confidence            346889999999999988889999998877643222        222333222 3456777777888887632 1 2   


Q ss_pred             ------hHHHHHHHHhccCCCHHHHHHHHHHHhccC------------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051          238 ------ASAALSDVLRNVNEHPMVRHEAAEALGSIA------------DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEY  299 (318)
Q Consensus       238 ------~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~  299 (318)
                            .++.++-.....  +|.+-+.++.+||++.            ...+-+.|.-+..+.++-.|..|+.|+..+..
T Consensus       259 ~Lvaa~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat  336 (832)
T KOG3678|consen  259 RLVAAGGLDAVLYWCRRT--DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT  336 (832)
T ss_pred             HHHhhcccchheeecccC--CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence                  223333333444  7888889999999974            23355666666667788999999999988765


Q ss_pred             h
Q 021051          300 E  300 (318)
Q Consensus       300 ~  300 (318)
                      .
T Consensus       337 ~  337 (832)
T KOG3678|consen  337 N  337 (832)
T ss_pred             h
Confidence            4

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=83.83  E-value=1.7  Score=43.27  Aligned_cols=106  Identities=16%  Similarity=0.237  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHhccCC------CChHHHHHHhcc-CCCHHHHHHHHHHHhccCC------CCcHHHHHHhhhcCCCCHHHH
Q 021051           33 SERFRALFSLRNLKG------PGPRDALIRATK-DSSNLLAHEAAFALGQMQD------AEAIPALEAVLNDFSLHPIVR   99 (318)
Q Consensus        33 ~~r~~A~~~l~~~~~------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~~~vR   99 (318)
                      .+|..+.-+++++.-      ...+|.|.+-|. .....+|-..+-+++.+..      +..+|.+...|.  |+++.||
T Consensus       946 ~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~--Dp~~iVR 1023 (1529)
T KOG0413|consen  946 KVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLC--DPSVIVR 1023 (1529)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhc--CchHHHH
Confidence            688888888888743      346777777663 5567788777777776552      367999999999  9999999


Q ss_pred             HHHHHHHHhcCCCC--------cHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051          100 HEAAEALGAIGLES--------NIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus       100 ~~a~~~L~~~~~~~--------~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      +.++..|+++-..+        .+..+.. + -|.++.+|..+-..++.+-
T Consensus      1024 rqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~-l-~D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1024 RQTIILLARLLQFGIVKWNGELFIRFMLA-L-LDANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred             HHHHHHHHHHHhhhhhhcchhhHHHHHHH-H-cccCHHHHHHHHHHHHHHH
Confidence            99999998865433        3445555 3 3889999999999998764

>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases

Probab=83.52  E-value=13  Score=29.35  Aligned_cols=92  Identities=15%  Similarity=0.018  Sum_probs=57.5

Q ss_pred             CCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhc
Q 021051           47 GPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLV  123 (318)
Q Consensus        47 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~  123 (318)
                      .|.+.+.+.....+.+..-...+...|....... ...-+++|...=++..||..|++.|....+.+   .++.|++++.
T Consensus        37 ~p~aLp~~L~s~~~w~~~~~~e~~~LL~~W~p~~-p~~ALeLL~~~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLk  115 (169)
T cd00869          37 EPNALPLVLASAPSWDWANLMDVYQLLHQWAPLR-PLIALELLLPKFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALK  115 (169)
T ss_pred             CcHHHHHHHHhcccCcHHHHHHHHHHHhCCCCCC-HHHHHHHcCCcCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4677888877553333333445566666665533 44445555533467889999999999988755   4677778676


Q ss_pred             cCC---CHHHHHHHHHHHH
Q 021051          124 SDP---AQEVRETCELALE  139 (318)
Q Consensus       124 ~d~---~~~vr~~a~~aL~  139 (318)
                      .|.   ++-.+.-.-+++.
T Consensus       116 yE~~~~s~L~~FLl~RAl~  134 (169)
T cd00869         116 FELYLKSALVRFLLSRSLV  134 (169)
T ss_pred             ccccCcChHHHHHHHHHhc
Confidence            555   3555555555544

Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=83.32  E-value=38  Score=31.38  Aligned_cols=232  Identities=17%  Similarity=0.127  Sum_probs=113.4

Q ss_pred             CCCChHHHHHHhccCCC--HHHHHHHHHHHhccCCCC--------cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----
Q 021051           46 KGPGPRDALIRATKDSS--NLLAHEAAFALGQMQDAE--------AIPALEAVLNDFSLHPIVRHEAAEALGAIGL----  111 (318)
Q Consensus        46 ~~~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~~~--------~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----  111 (318)
                      ......+.|++.+..++  ..||..+.+.|.++-...        ....++.+.+ ..+.+...+..+..|+++=.    
T Consensus       177 R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK-~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  177 RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAK-EREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhh-hcCcHHHHHHHHHHHHHHhhhhHH
Confidence            34566777777776664  356888888776544211        1233334444 23444555555555554321    


Q ss_pred             -------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccc-cccCCCCcccCCCCCCCCCccHHHHHHHHc
Q 021051          112 -------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSS-MTERSPFMSVDPAAPASSCSSVDMLREVLL  183 (318)
Q Consensus       112 -------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~  183 (318)
                             .+.++.++- --.-.+|.+.+-++.+|+++.  .+....+.. +.               .+.+.+-|+-+..
T Consensus       256 t~~~Lvaa~~lD~vl~-~~rRt~P~lLRH~ALAL~N~~--L~~~~a~qrrmv---------------eKr~~EWLF~LA~  317 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLY-WCRRTDPALLRHCALALGNCA--LHGGQAVQRRMV---------------EKRAAEWLFPLAF  317 (832)
T ss_pred             HHHHHHhhcccchhee-ecccCCHHHHHHHHHHhhhhh--hhchhHHHHHHH---------------Hhhhhhhhhhhhc
Confidence                   122332222 113346888888888888876  222221100 00               1122333444444


Q ss_pred             CCCcChHHHHHHHHHHHhCCChhHH-HHHH---------HHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCH
Q 021051          184 GEEKGMYERYAALFALRNHGGDEAV-SAII---------DSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHP  253 (318)
Q Consensus       184 ~~~~~~~~r~~a~~~L~~~~~~~~~-~~l~---------~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~  253 (318)
                      +.++-  .|.-|.-+...+....-+ +.+.         .++..-||..-..=..-..+-..++-++.|+.++.+.  .-
T Consensus       318 skDel--~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~--R~  393 (832)
T KOG3678|consen  318 SKDEL--LRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSN--RL  393 (832)
T ss_pred             chHHH--HHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcc--hh
Confidence            44333  477777666655432222 1111         1222222221111111111222356677788887643  33


Q ss_pred             HHHH---------HHHHHHhc----cCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          254 MVRH---------EAAEALGS----IADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       254 ~vr~---------~a~~aL~~----~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      +.|-         +++..+..    +.+-.+|+.|.++..+++..-..-|..||..|+..
T Consensus       394 EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE  453 (832)
T KOG3678|consen  394 EAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE  453 (832)
T ss_pred             hhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence            3321         22222211    12346888999988888877777788888877543

>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=82.64  E-value=6.4  Score=31.71  Aligned_cols=79  Identities=22%  Similarity=0.140  Sum_probs=56.5

Q ss_pred             CCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhh
Q 021051           46 KGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSL  122 (318)
Q Consensus        46 ~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l  122 (318)
                      ..|++.+.+...++-.++.....+...|..+.. -....-+++|...-+++.||..|++.|....+.+   .+|.|++++
T Consensus        42 ~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~-~~p~~AL~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaL  120 (184)
T PF00613_consen   42 NNPEALPKLLRSVDWWNPEEVSEAYQLLLQWPP-ISPEDALELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQAL  120 (184)
T ss_dssp             TSGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHC-TTHHHHHHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHG
T ss_pred             hCchHHHHHHhhCCCCchhhHHHHHHHHHcCCC-CCHHHHHHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            346788888887777777777888888888777 3444456677643467999999999999887654   578888877


Q ss_pred             ccC
Q 021051          123 VSD  125 (318)
Q Consensus       123 ~~d  125 (318)
                      ..+
T Consensus       121 r~e  123 (184)
T PF00613_consen  121 RYE  123 (184)
T ss_dssp             GGS
T ss_pred             eec
Confidence            666

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=82.61  E-value=3.1  Score=40.10  Aligned_cols=107  Identities=18%  Similarity=0.161  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHhccC---C---CChHHHHHHhc-cCCCHHHHHHHHHHHhccCC------CCcHHHHHHhhhcCCCCHHHH
Q 021051           33 SERFRALFSLRNLK---G---PGPRDALIRAT-KDSSNLLAHEAAFALGQMQD------AEAIPALEAVLNDFSLHPIVR   99 (318)
Q Consensus        33 ~~r~~A~~~l~~~~---~---~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~~~vR   99 (318)
                      .....|.-.|.++-   .   .+-.|.|+..+ ++++|.+|..|+-.||.+..      +.....|..-|.  |.+..||
T Consensus       911 ~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~--De~~~V~  988 (1128)
T COG5098         911 ELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLG--DEDADVR  988 (1128)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhc--chhhHHH
Confidence            66666766665541   1   36788888888 59999999999999988652      244567777777  8999999


Q ss_pred             HHHHHHHHh------cCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051          100 HEAAEALGA------IGLESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus       100 ~~a~~~L~~------~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      +.|+-.+..      +......+.+.. ++.|+|..+...|..-+..++
T Consensus       989 rtclmti~fLilagq~KVKGqlg~ma~-~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098         989 RTCLMTIHFLILAGQLKVKGQLGKMAL-LLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred             HHHHHHHHHHHHccceeeccchhhhHh-hccCCcchHHHHHHHHHHHHH
Confidence            999987754      345667788888 668999999988888888776

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=82.39  E-value=14  Score=28.01  Aligned_cols=80  Identities=11%  Similarity=0.025  Sum_probs=51.2

Q ss_pred             CCHHHHHHHHHHHhccC--CCChHHHHHHhccCCCHHHHHHHHHHHhccC------------CCCcHHHHHHhhhcCCCC
Q 021051           30 QPISERFRALFSLRNLK--GPGPRDALIRATKDSSNLLAHEAAFALGQMQ------------DAEAIPALEAVLNDFSLH   95 (318)
Q Consensus        30 ~~~~~r~~A~~~l~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~~~~~~   95 (318)
                      +||..-...+..+..-.  ..+++..|.+.++++++.+...|+..|..+-            ....+..|..++......
T Consensus        16 ~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~   95 (133)
T smart00288       16 EDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPL   95 (133)
T ss_pred             cCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCc
Confidence            34666666666664432  2467888888999999999999988875432            234566666666632222


Q ss_pred             HHHHHHHHHHHHhc
Q 021051           96 PIVRHEAAEALGAI  109 (318)
Q Consensus        96 ~~vR~~a~~~L~~~  109 (318)
                      +.|+..++..+...
T Consensus        96 ~~Vk~kil~li~~W  109 (133)
T smart00288       96 PLVKKRILELIQEW  109 (133)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33777777766654

Unpublished observations. Domain of unknown function.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.22  E-value=17  Score=31.62  Aligned_cols=87  Identities=20%  Similarity=0.167  Sum_probs=55.1

Q ss_pred             HHHHHHHHcCCCcChHHHHHHHHHHHhC-CC---------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcc-h-----
Q 021051          175 VDMLREVLLGEEKGMYERYAALFALRNH-GG---------DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKA-A-----  238 (318)
Q Consensus       175 ~~~L~~~l~~~~~~~~~r~~a~~~L~~~-~~---------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~-----  238 (318)
                      ...+.+++.+.++++  |..|+..+..+ +.         ...++.+.+++++.++  ...|+.+|.++.... .     
T Consensus         5 l~elv~ll~~~sP~v--~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll   80 (353)
T KOG2973|consen    5 LVELVELLHSLSPPV--RKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL   80 (353)
T ss_pred             HHHHHHHhccCChHH--HHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence            556888998988875  99998766544 33         4566778888887776  556777777765432 2     


Q ss_pred             ---HHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          239 ---SAALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       239 ---~~~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                         +..+...+.++  .+.+-...+..|.++.
T Consensus        81 ~~~~k~l~~~~~~p--~~~lad~~cmlL~NLs  110 (353)
T KOG2973|consen   81 QDLLKVLMDMLTDP--QSPLADLICMLLSNLS  110 (353)
T ss_pred             HHHHHHHHHHhcCc--ccchHHHHHHHHHHhc
Confidence               22333333443  3455556666677765

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=81.82  E-value=5  Score=32.39  Aligned_cols=60  Identities=15%  Similarity=0.202  Sum_probs=42.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHhcc------CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC
Q 021051          207 AVSAIIDSLGATSALLKHEVAYVLGQL------QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD  268 (318)
Q Consensus       207 ~~~~l~~~l~d~~~~vr~~a~~~L~~~------~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~  268 (318)
                      .++.+.++.-+++..+|..|+..++.+      .+...+|.|+.+..|+  ++.+|..|...+..+..
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~--~~~ir~~A~~~l~~l~e   74 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSP--NPSIRSRAYQLLKELHE   74 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCC--ChHHHHHHHHHHHHHHH
Confidence            455666666677788888777777643      3456778888877776  77888877777777643

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=81.35  E-value=12  Score=32.95  Aligned_cols=42  Identities=10%  Similarity=0.002  Sum_probs=24.9

Q ss_pred             HHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051          100 HEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus       100 ~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      ...+..+....+......|.+ +.+.+|+.+...+...+..+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll  133 (312)
T PF03224_consen   92 VELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILTSLL  133 (312)
T ss_dssp             HHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHHHHH
Confidence            344444444333335556666 556779999999999998886

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=81.25  E-value=11  Score=30.20  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=17.7

Q ss_pred             HHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051          116 PLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus       116 ~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      +.|...+..|+++.+|.+|+.++..+-
T Consensus        42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL   68 (182)
T PF13251_consen   42 PSLLTCILKDPSPKVRAAAASALAALL   68 (182)
T ss_pred             cchhHHHHcCCchhHHHHHHHHHHHHH
Confidence            344444667777777777777776654

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=81.07  E-value=10  Score=28.96  Aligned_cols=78  Identities=15%  Similarity=0.077  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHhccCC--CChHHHHHHhccCCCHHHHHHHHHHHhcc------------CCCCcHHHHHHhhhcCCCCH
Q 021051           31 PISERFRALFSLRNLKG--PGPRDALIRATKDSSNLLAHEAAFALGQM------------QDAEAIPALEAVLNDFSLHP   96 (318)
Q Consensus        31 ~~~~r~~A~~~l~~~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~~~~~~~   96 (318)
                      ||..-...+..+..-..  .+++..|.+.|++.++.++..|+..|..+            +....+..|..++.+....+
T Consensus        22 Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~  101 (140)
T PF00790_consen   22 DWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDP  101 (140)
T ss_dssp             -HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHH
T ss_pred             CHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCc
Confidence            46555556666555422  45777888888889999998888776432            22334555555555322222


Q ss_pred             H--HHHHHHHHHHh
Q 021051           97 I--VRHEAAEALGA  108 (318)
Q Consensus        97 ~--vR~~a~~~L~~  108 (318)
                      .  ||..++..+..
T Consensus       102 ~~~Vk~k~l~ll~~  115 (140)
T PF00790_consen  102 ETPVKEKILELLQE  115 (140)
T ss_dssp             HSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            2  55555555544

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain)

Probab=80.34  E-value=16  Score=29.40  Aligned_cols=78  Identities=18%  Similarity=0.063  Sum_probs=55.0

Q ss_pred             CCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhc
Q 021051           47 GPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLV  123 (318)
Q Consensus        47 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~  123 (318)
                      .|++.+.+....+=.++.....+...+..... -....-+++|...=+++.||..|++.|...++.+   .++.|++++.
T Consensus        42 ~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~-~~~~~aL~LL~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr  120 (184)
T smart00145       42 NPKALPKFLLSVNWSDADEVAQALSLLKKWAP-LDPEDALELLSPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALK  120 (184)
T ss_pred             ChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-CCHHHHHHHhCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            46777777766665666666677777887765 4445556666633468999999999999988754   4677888665


Q ss_pred             cC
Q 021051          124 SD  125 (318)
Q Consensus       124 ~d  125 (318)
                      .|
T Consensus       121 ~E  122 (184)
T smart00145      121 YE  122 (184)
T ss_pred             cc
Confidence            55

PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=80.33  E-value=4.6  Score=38.99  Aligned_cols=88  Identities=18%  Similarity=0.112  Sum_probs=60.2

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhccC-----CC-----------ChHHHHHHhccCCCHHHHHHHHHHHhccCCC--
Q 021051           18 EKFLCDRLVDPTQPISERFRALFSLRNLK-----GP-----------GPRDALIRATKDSSNLLAHEAAFALGQMQDA--   79 (318)
Q Consensus        18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~-----~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--   79 (318)
                      ...+.++|++..-  -.|...+..++++-     ++           ..+..|.+.|.|.+|++|..|+..+.++.+.  
T Consensus       301 ~~~~~~LLdses~--tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s  378 (1128)
T COG5098         301 YEHFDELLDSESF--TLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS  378 (1128)
T ss_pred             HHHHHHHhcccch--hHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence            4456677777764  78888887777652     11           2344555666788888888888888765432  


Q ss_pred             -------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 021051           80 -------EAIPALEAVLNDFSLHPIVRHEAAEALGAI  109 (318)
Q Consensus        80 -------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~  109 (318)
                             ..+......+.  |....||+.|+..++.+
T Consensus       379 k~~~~r~ev~~lv~r~lq--Drss~VRrnaikl~SkL  413 (1128)
T COG5098         379 KTVGRRHEVIRLVGRRLQ--DRSSVVRRNAIKLCSKL  413 (1128)
T ss_pred             cccchHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHH
Confidence                   23555666677  78888888888887764

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=80.27  E-value=22  Score=34.75  Aligned_cols=105  Identities=22%  Similarity=0.194  Sum_probs=69.9

Q ss_pred             CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--C---------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 021051           80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIG--L---------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG  148 (318)
Q Consensus        80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--~---------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~  148 (318)
                      ...+..+.+|.  +.++.+...|..-+..+.  +         -.-++.|+. ++..+..+|++.+..+|.++-      
T Consensus       233 ~~lpe~i~mL~--~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~-Ll~~~~~evq~~acgaLRNLv------  303 (717)
T KOG1048|consen  233 PTLPEVISMLM--SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVA-LLDHRNDEVQRQACGALRNLV------  303 (717)
T ss_pred             cccHHHHHHHh--ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHH-HhcCCcHHHHHHHHHHHHhhh------
Confidence            45677778888  677777766666665443  2         235788888 668899999999999999987      


Q ss_pred             ccccccccCCCCcccCCCC--CCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh
Q 021051          149 SDGSSMTERSPFMSVDPAA--PASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD  205 (318)
Q Consensus       149 ~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~  205 (318)
                                 |.......  ++.....++++.+.|+...+. .+|..+.-.|-++...
T Consensus       304 -----------f~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~-ev~e~iTg~LWNLSS~  350 (717)
T KOG1048|consen  304 -----------FGKSTDSNKLAIKELNGVPTLVRLLRHTQDD-EVRELITGILWNLSSN  350 (717)
T ss_pred             -----------cccCCcccchhhhhcCChHHHHHHHHhhcch-HHHHHHHHHHhcccch
Confidence                       22222111  111345788999999753322 1477777777777543

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=80.25  E-value=12  Score=28.75  Aligned_cols=79  Identities=13%  Similarity=0.129  Sum_probs=49.5

Q ss_pred             CCHHHHHHHHHHHhcc--CCCChHHHHHHhccCCCHHHHHHHHHHHhccC------------CCCcHHHHHHhhhcCCCC
Q 021051           30 QPISERFRALFSLRNL--KGPGPRDALIRATKDSSNLLAHEAAFALGQMQ------------DAEAIPALEAVLNDFSLH   95 (318)
Q Consensus        30 ~~~~~r~~A~~~l~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~~~~~~   95 (318)
                      +||..-...+-.+..-  +..+++..|.+.+.+.++.+...|+..|..+-            ....+..|..++... .+
T Consensus        16 ~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-~~   94 (144)
T cd03568          16 ENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-VH   94 (144)
T ss_pred             cCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-CC
Confidence            3577766677666553  22467888888888899999888888775322            234455555555521 45


Q ss_pred             HHHHHHHHHHHHhc
Q 021051           96 PIVRHEAAEALGAI  109 (318)
Q Consensus        96 ~~vR~~a~~~L~~~  109 (318)
                      +.|+..++..+..+
T Consensus        95 ~~Vk~kil~li~~W  108 (144)
T cd03568          95 PTVKEKLREVVKQW  108 (144)
T ss_pred             HHHHHHHHHHHHHH
Confidence            56666665555543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases

Probab=80.14  E-value=14  Score=29.20  Aligned_cols=17  Identities=18%  Similarity=0.227  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHhccCCc
Q 021051          220 ALLKHEVAYVLGQLQNK  236 (318)
Q Consensus       220 ~~vr~~a~~~L~~~~~~  236 (318)
                      ..||..|+..|..+.+.
T Consensus        85 ~~VR~yAV~~L~~~~dd  101 (169)
T cd00869          85 QEVRAHAVQWLARLSND  101 (169)
T ss_pred             hHHHHHHHHHHHhCCHH
Confidence            44555555555555444

Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	318
3ltm_A	211	Structure Of A New Family Of Artificial Alpha Helic		3e-05
3ltj_A	201	Structure Of A New Family Of Artificial Alpha Helic		3e-05

>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 211

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 190 YERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNV 249
           Y R AA +AL   G + AV  +I +L    A ++   A  LGQ+ ++ A   L   L+  
Sbjct: 34  YVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALK-- 91
Query: 250 NEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSML 297
           +E   VR  AA ALG I D++++  L +  KD +  V  +   AL  +
Sbjct: 92  DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEI 139

>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 201

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 190 YERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNV 249
           Y R AA +AL   G + AV  +I +L    A ++   A  LGQ+ ++ A   L   L+  
Sbjct: 29  YVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALK-- 86
Query: 250 NEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALS 295
           +E   VR  AA ALG I D++++  L +  KD +  V  +   AL 
Sbjct: 87  DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALG 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-37
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	9e-31
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-19
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	8e-17
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-16
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	6e-34
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	7e-18
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-12
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-29
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-19
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-19
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-15
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-19
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-19
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-12
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-10
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-09
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	1e-07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	1e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	5e-07
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-04
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-04

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score =  130 bits (330), Expect = 4e-37
 Identities = 59/235 (25%), Positives = 90/235 (38%), Gaps = 35/235 (14%)

Query: 37  RALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHP 96
           R      +   P   +  I+  +D S  +   AA+ALG++ D  A+  L   L D     
Sbjct: 2   RGSHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKD--EDA 59

Query: 97  IVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTE 156
            VR  AA+ALG IG E  +  L  +L  D    VR++  +AL +I               
Sbjct: 60  WVRRAAADALGQIGDERAVEPLIKAL-KDEDGWVRQSAAVALGQIG-------------- 104

Query: 157 RSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLG 216
                  D  A       V+ L + L  E+  +  R AA FAL   G + AV  +I +L 
Sbjct: 105 -------DERA-------VEPLIKALKDEDWFV--RIAAAFALGEIGDERAVEPLIKALK 148

Query: 217 ATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQS 271
                ++   A  LG++  +   AA+  +          R  A   L +     S
Sbjct: 149 DEDGWVRQSAADALGEIGGERVRAAMEKLAE--TGTGFARKVAVNYLETHKSLIS 201

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score =  113 bits (286), Expect = 9e-31
 Identities = 55/230 (23%), Positives = 86/230 (37%), Gaps = 35/230 (15%)

Query: 69  AAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQ 128
            +       D E +      L D S    VR  AA ALG IG E  +  L  +L  D   
Sbjct: 3   GSHHHHHHTDPEKVEMYIKNLQDDS--YYVRRAAAYALGKIGDERAVEPLIKAL-KDEDA 59

Query: 129 EVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKG 188
            VR     AL +I                      D  A       V+ L + L  E+  
Sbjct: 60  WVRRAAADALGQIG---------------------DERA-------VEPLIKALKDEDGW 91

Query: 189 MYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRN 248
           +  R +A  AL   G + AV  +I +L      ++   A+ LG++ ++ A   L   L++
Sbjct: 92  V--RQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKD 149

Query: 249 VNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLE 298
             E   VR  AA+ALG I  ++    +++ A+       +     L   +
Sbjct: 150 --EDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 197

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 55/226 (24%), Positives = 82/226 (36%), Gaps = 35/226 (15%)

Query: 13  SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFA 72
           + PE  +     L D +  +  R  A ++L  +      + LI+A KD    +   AA A
Sbjct: 11  TDPEKVEMYIKNLQDDSYYV--RRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADA 68

Query: 73  LGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRE 132
           LGQ+ D  A+  L   L D      VR  AA ALG IG E  +  L  +L  D    VR 
Sbjct: 69  LGQIGDERAVEPLIKALKD--EDGWVRQSAAVALGQIGDERAVEPLIKAL-KDEDWFVRI 125

Query: 133 TCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYER 192
               AL  I                      D  A       V+ L + L  E+  +  R
Sbjct: 126 AAAFALGEIG---------------------DERA-------VEPLIKALKDEDGWV--R 155

Query: 193 YAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAA 238
            +A  AL   GG+   +A+       +   +      L   ++  +
Sbjct: 156 QSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSLIS 201

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 76.6 bits (189), Expect = 8e-17
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 2/108 (1%)

Query: 194 AALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHP 253
                  +H   E V   I +L   S  ++   AY LG++ ++ A   L   L++  E  
Sbjct: 2   RGSHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKD--EDA 59

Query: 254 MVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQ 301
            VR  AA+ALG I D++++  L +  KD +  V QS  VAL  +  E+
Sbjct: 60  WVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER 107

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 48/200 (24%), Positives = 78/200 (39%), Gaps = 33/200 (16%)

Query: 102 AAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFM 161
            +           + +   +L  D +  VR     AL +I                    
Sbjct: 3   GSHHHHHHTDPEKVEMYIKNL-QDDSYYVRRAAAYALGKIG------------------- 42

Query: 162 SVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSAL 221
             D  A       V+ L + L  +++  + R AA  AL   G + AV  +I +L      
Sbjct: 43  --DERA-------VEPLIKAL--KDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 91

Query: 222 LKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKD 281
           ++   A  LGQ+ ++ A   L   L++  E   VR  AA ALG I D++++  L +  KD
Sbjct: 92  VRQSAAVALGQIGDERAVEPLIKALKD--EDWFVRIAAAFALGEIGDERAVEPLIKALKD 149

Query: 282 PEPIVSQSCEVALSMLEYEQ 301
            +  V QS   AL  +  E+
Sbjct: 150 EDGWVRQSAADALGEIGGER 169

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score =  124 bits (313), Expect = 6e-34
 Identities = 46/269 (17%), Positives = 88/269 (32%), Gaps = 26/269 (9%)

Query: 34  ERFRALFSLRNLKGPGPR--DALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLND 91
           ++ +A               D L R   D ++L    +A  L      +A+       +D
Sbjct: 6   QKRKASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSD 65

Query: 92  FSLHPIVRHEAAEALGAIGLESN-----IPLLKNSLVSDPAQEVRETCELALERIEKLKA 146
              + I R   A  LG I +          +L N  ++D +  VR T   +  +  K   
Sbjct: 66  --KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP 123

Query: 147 SGSDGSSMTERSPFMSVDP-----AAPASSC----SSVDMLREVLLGEEKGMYERYAALF 197
             S       +              A A S     +++ +L  +L  ++     R  A F
Sbjct: 124 IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLL--KDPNGDVRNWAAF 181

Query: 198 ALR--NHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMV 255
           A+    +   +     ++ L   +  ++ E    L   ++K   + L D L    +   V
Sbjct: 182 AININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL----KKNTV 237

Query: 256 RHEAAEALGSIADDQSIGLLKEFAKDPEP 284
             +  EA G + D   + +L       + 
Sbjct: 238 YDDIIEAAGELGDKTLLPVLDTMLYKFDD 266

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 81.0 bits (200), Expect = 7e-18
 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 8/129 (6%)

Query: 14  SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPR--DALIRATKDSSNLLAHEAAF 71
                  L + L DP   +  R  A F++   K       D  +   +D +  +  EA  
Sbjct: 157 DKATIPLLINLLKDPNGDV--RNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAII 214

Query: 72  ALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVR 131
            L   +D   +  L   L        V  +  EA G +G ++ +P+L   L      E+ 
Sbjct: 215 GLSYRKDKRVLSVLCDELKK----NTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEII 270

Query: 132 ETCELALER 140
            +    L+R
Sbjct: 271 TSAIDKLKR 279

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 35/235 (14%), Positives = 66/235 (28%), Gaps = 56/235 (23%)

Query: 68  EAAFALGQMQD--AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSD 125
           +A+   G            L  +L+D +   + R  +A  L   G +  + L      SD
Sbjct: 9   KASKEYGLYNQCKKLNDDELFRLLDDHN--SLKRISSARVLQLRGGQDAVRLAIE-FCSD 65

Query: 126 PAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGE 185
                R+     L +I+  K                  +           ++L  + L +
Sbjct: 66  KNYIRRDIGAFILGQIKICKK----------------CEDNV-------FNILNNMALND 102

Query: 186 EKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDV 245
           +     R  A+ +         + +                                   
Sbjct: 103 KSA-CVRATAIESTAQRCKKNPIYS-------------------------PKIVEQSQIT 136

Query: 246 LRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300
             +  +   VR   A A+  I D  +I LL    KDP   V      A+++ +Y+
Sbjct: 137 AFD--KSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYD 189

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score =  110 bits (278), Expect = 2e-29
 Identities = 56/232 (24%), Positives = 86/232 (37%), Gaps = 35/232 (15%)

Query: 69  AAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQ 128
              A     D E +      L D S    VR  AA ALG IG E  +  L  +L  D   
Sbjct: 8   EKAAAPLRADPEKVEMYIKNLQDDS--YYVRRAAAYALGKIGDERAVEPLIKAL-KDEDA 64

Query: 129 EVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKG 188
            VR     AL +I                      D  A       V+ L + L  E+  
Sbjct: 65  WVRRAAADALGQIG---------------------DERA-------VEPLIKALKDEDGW 96

Query: 189 MYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRN 248
           +  R +A  AL   G + AV  +I +L      ++   A+ LG++ ++ A   L   L++
Sbjct: 97  V--RQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKD 154

Query: 249 VNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300
             E   VR  AA+ALG I  ++    +++ A+       +     L   +  
Sbjct: 155 --EDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 55/226 (24%), Positives = 82/226 (36%), Gaps = 35/226 (15%)

Query: 10  AFKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEA 69
             ++ PE  +     L D +  +  R  A ++L  +      + LI+A KD    +   A
Sbjct: 13  PLRADPEKVEMYIKNLQDDSYYV--RRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAA 70

Query: 70  AFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQE 129
           A ALGQ+ D  A+  L   L D      VR  AA ALG IG E  +  L  +L  D    
Sbjct: 71  ADALGQIGDERAVEPLIKALKDED--GWVRQSAAVALGQIGDERAVEPLIKAL-KDEDWF 127

Query: 130 VRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGM 189
           VR     AL  I                      D  A       V+ L + L  E+  +
Sbjct: 128 VRIAAAFALGEIG---------------------DERA-------VEPLIKALKDEDGWV 159

Query: 190 YERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQN 235
             R +A  AL   GG+   +A+       +   +      L   ++
Sbjct: 160 --RQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKS 203

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 82.8 bits (205), Expect = 5e-19
 Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 21  LCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAE 80
           L   L D    +  R  A  +L  +      + LI+A KD    +   AAFALG++ D  
Sbjct: 86  LIKALKDEDGWV--RQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER 143

Query: 81  AIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALER 140
           A+  L   L D      VR  AA+ALG IG E     ++  L        R+     LE 
Sbjct: 144 AVEPLIKALKD--EDGWVRQSAADALGEIGGERVRAAME-KLAETGTGFARKVAVNYLET 200

Query: 141 IEKL 144
            +  
Sbjct: 201 HKSF 204

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 34/204 (16%)

Query: 98  VRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTER 157
            + E A A         + +   +L  D +  VR     AL +I                
Sbjct: 5   PQFEKA-AAPLRADPEKVEMYIKNL-QDDSYYVRRAAAYALGKIG--------------- 47

Query: 158 SPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGA 217
                 D  A       V+ L + L  +++  + R AA  AL   G + AV  +I +L  
Sbjct: 48  ------DERA-------VEPLIKAL--KDEDAWVRRAAADALGQIGDERAVEPLIKALKD 92

Query: 218 TSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKE 277
               ++   A  LGQ+ ++ A   L   L++  E   VR  AA ALG I D++++  L +
Sbjct: 93  EDGWVRQSAAVALGQIGDERAVEPLIKALKD--EDWFVRIAAAFALGEIGDERAVEPLIK 150

Query: 278 FAKDPEPIVSQSCEVALSMLEYEQ 301
             KD +  V QS   AL  +  E+
Sbjct: 151 ALKDEDGWVRQSAADALGEIGGER 174

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 81.6 bits (202), Expect = 2e-19
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 6/119 (5%)

Query: 21  LCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAE 80
               + D  + +  R     +L  + G    + L+ +  +    +   AA+ +G  QD  
Sbjct: 17  RGSHMADENKWV--RRDVSTALSRM-GDEAFEPLLESLSNEDWRIRGAAAWIIGNFQDER 73

Query: 81  AIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALE 139
           A+  L  +L D      VR  AA +L  IG E     ++  L        R+     LE
Sbjct: 74  AVEPLIKLLEDD--SGFVRSGAARSLEQIGGERVRAAME-KLAETGTGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 80.8 bits (200), Expect = 4e-19
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 192 RYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNE 251
           R     AL   G DEA   +++SL      ++   A+++G  Q++ A   L  +L +  +
Sbjct: 29  RRDVSTALSRMG-DEAFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLED--D 85

Query: 252 HPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVAL 294
              VR  AA +L  I  ++    +++ A+       +     L
Sbjct: 86  SGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 41  SLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRH 100
           S  +               D +  +  + + AL +M D EA   L   L++      +R 
Sbjct: 4   SHHHHHHSSGLVPRGSHMADENKWVRRDVSTALSRMGD-EAFEPLLESLSN--EDWRIRG 60

Query: 101 EAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERI 141
            AA  +G    E  +  L   L  D +  VR     +LE+I
Sbjct: 61  AAAWIIGNFQDERAVEPLIKLL-EDDSGFVRSGAARSLEQI 100

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 17/100 (17%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 198 ALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRH 257
           +  +H     +      +   +  ++ +V+  L ++ ++A    L + L N  E   +R 
Sbjct: 4   SHHHHHHSSGLVPRGSHMADENKWVRRDVSTALSRMGDEAF-EPLLESLSN--EDWRIRG 60

Query: 258 EAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSML 297
            AA  +G+  D++++  L +  +D    V      +L  +
Sbjct: 61  AAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQI 100

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 24/160 (15%), Positives = 51/160 (31%), Gaps = 34/160 (21%)

Query: 72  ALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVR 131
           +      +  +    + + D   +  VR + + AL  +G E+  PLL+   +S+    +R
Sbjct: 4   SHHHHHHSSGLVPRGSHMAD--ENKWVRRDVSTALSRMGDEAFEPLLE--SLSNEDWRIR 59

Query: 132 ETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYE 191
                 +   +                     D  A       V+ L ++L  +   +  
Sbjct: 60  GAAAWIIGNFQ---------------------DERA-------VEPLIKLLEDDSGFV-- 89

Query: 192 RYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLG 231
           R  A  +L   GG+   +A+       +   +      L 
Sbjct: 90  RSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYLE 129

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 51/287 (17%), Positives = 93/287 (32%), Gaps = 35/287 (12%)

Query: 52  DALIRATKDSSNLLAHEAAFALGQM---QDAEAIPALEAVLNDFSL------HPIVRHEA 102
              +  ++ SS  +   + + LG +      +    L+ ++ + S         ++ H A
Sbjct: 398 APYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGA 457

Query: 103 AEALGAIGLESN----IPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSM---- 154
           +  +G   + S        LK  ++ + +    E   L +               M    
Sbjct: 458 SLGIGLAAMGSANIEVYEALKE-VLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS 516

Query: 155 --TERSPFMSVDPAAPASSC----SSVDMLREVLLGEEKGMYERYAALFALR-NHGGDEA 207
             T+            A          D L   +L  ++    RY   F +   + G   
Sbjct: 517 QETQHGNITRGLAVGLALINYGRQELADDLITKMLASDES-LLRYGGAFTIALAYAGTGN 575

Query: 208 VSAIIDSLGA----TSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEH-PMVRHEAAEA 262
            SA+   L      ++  ++      LG +  +  +     V      H   VR   A A
Sbjct: 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFA 635

Query: 263 LGSI----ADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKS 305
           LG          +I +L    KDP   V Q+  +ALSM+  +Q EK 
Sbjct: 636 LGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKL 682

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 41/242 (16%), Positives = 76/242 (31%), Gaps = 37/242 (15%)

Query: 51  RDALIRATKDSSNLLAHEAAFALGQMQ----DAEAIPALEAVLNDFSLHPIVRHEA-AEA 105
            +AL     + S      AA  +G         EAI  +     +     I R  A   A
Sbjct: 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLA 533

Query: 106 LGAIGLESNIPLLKNSLVSDPAQEVRETCELAL----------ERIEK-LKASGSDGSSM 154
           L   G +     L   +++     +R      +            +++ L  + SD +  
Sbjct: 534 LINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDD 593

Query: 155 TERSPFMS---VDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAI 211
             R+  ++   V      +    V      LL +    + R    FAL      + + + 
Sbjct: 594 VRRAAVIALGFVLLRDYTTVPRIVQ-----LLSKSHNAHVRCGTAFALGIACAGKGLQSA 648

Query: 212 IDSLGATSALLKHEVAYV----------LGQLQNKAASAALSDVLRNVNEHPMVRHEAAE 261
           ID L     L K  V +V          +   Q +  +  ++D+ +N       +H+   
Sbjct: 649 IDVL---DPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGL 705

Query: 262 AL 263
           A 
Sbjct: 706 AK 707

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 34/241 (14%), Positives = 70/241 (29%), Gaps = 47/241 (19%)

Query: 78  DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG------LESNIPLLKNSLVSDPAQEVR 131
           D   +  L  +L+D      V   A   +  I        E  +  L + L    A  + 
Sbjct: 30  DESVLKKLIELLDD--DLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLT 87

Query: 132 ETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYE 191
           +    A  ++                          P    S + +L       ++    
Sbjct: 88  QEIAKAFGQM----------------------AKEKPELVKSMIPVLFANYRIGDEKT-- 123

Query: 192 RYAALFALRNHGG------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN---KAASAAL 242
           +    +AL              V   +  L + +   K      +  +     K  +  L
Sbjct: 124 KINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL 183

Query: 243 SDVLRNVN-EHPMVRHEAAEALGSIAD-----DQSIGLLKEFAKDPEPIVSQSCEVALSM 296
             ++  ++    +VR  A EAL  +A       + +    E   D   +V+++ +  +S 
Sbjct: 184 PRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISR 243

Query: 297 L 297
           L
Sbjct: 244 L 244

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 48.5 bits (115), Expect = 7e-07
 Identities = 38/237 (16%), Positives = 68/237 (28%), Gaps = 47/237 (19%)

Query: 52  DALIRATKDSSNLLAHEAAFALGQM------QDAEAIPALEAVLNDFSLHPIVRHEAAEA 105
             LI    D    +   A   +  +           +  L ++L   S    +  E A+A
Sbjct: 35  KKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK-SEAIPLTQEIAKA 93

Query: 106 LGAIGLESN------IPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSP 159
            G +  E        IP+L  +      ++ +     ALE I                  
Sbjct: 94  FGQMAKEKPELVKSMIPVLFANY-RIGDEKTKINVSYALEEI------------------ 134

Query: 160 FMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD------EAVSAIID 213
                 A P    S V     +L    K   ++  AL  +   G +        +  II+
Sbjct: 135 ----AKANPMLMASIVRDFMSML--SSKNREDKLTALNFIEAMGENSFKYVNPFLPRIIN 188

Query: 214 SLGATSALLKHEVAYVLGQL--QNKAASAALSDVLRNVNEH-PMVRHEAAEALGSIA 267
            L     +++      L  L   N      +   L  +N+   +V     E +  + 
Sbjct: 189 LLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 56/386 (14%), Positives = 117/386 (30%), Gaps = 111/386 (28%)

Query: 5   DKFTNAF--KSSPEMEKFL-----CDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRA 57
           D F + F  K   +M K +      D ++     +      LF     K     + + + 
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV-SGTLRLFWTLLSK---QEEMVQKF 82

Query: 58  TKDSSNLLAHEAAFALGQMQDAEAIPALEAVL---------ND---FSLHPIVRHEAAEA 105
            ++   +L     F +  ++  +  P++   +         ND   F+ + + R +    
Sbjct: 83  VEE---VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 106 L--GAIGLESNIPLL--------KNSLVSDPAQEVRETC-----------------ELAL 138
           L    + L     +L        K  +  D     +  C                 E  L
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 139 ERIEKLKAS-GSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALF 197
           E ++KL      + +S ++ S              S    LR +L  +    YE    L 
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSS------NIKLRIHSIQAELRRLLKSK---PYEN--CLL 248

Query: 198 ALRNHGGDEAV--SAIIDSLGATSALL----KHEVAYVLGQLQNKAASAALSDVLRNVNE 251
            L N      V  +   ++   +  +L      +V   L        +A  + +  + + 
Sbjct: 249 VLLN------VQNAKAWNAFNLSCKILLTTRFKQVTDFLS-------AATTTHISLDHHS 295

Query: 252 HPMVRHEA----AEALGSIADD----------QSIGLLKEFAKDPEPI------------ 285
             +   E      + L     D          + + ++ E  +D                
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVNCDK 354

Query: 286 VSQSCEVALSMLEYEQLEKSFEYLFM 311
           ++   E +L++LE  +  K F+ L +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV 380

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 36/241 (14%), Positives = 64/241 (26%), Gaps = 44/241 (18%)

Query: 53  ALIRATKDSSNLLAHEAAFALG--------QMQDAEAIPALEAVLNDFSLHPIVRHEAAE 104
           AL     D S  L     + L         Q      +  L  +L   S    V   AA 
Sbjct: 228 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG--SDDINVVTCAAG 285

Query: 105 ALGAIGLESNI------------PLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGS 152
            L  +   +               L++  L +   +++ E    AL  +     S    +
Sbjct: 286 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL----TSRHQEA 341

Query: 153 SMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAII 212
            M + +                + ++ ++L         + A +  +RN     A  A +
Sbjct: 342 EMAQNA----------VRLHYGLPVVVKLLHPPSHWPLIK-ATVGLIRNLALCPANHAPL 390

Query: 213 DSLGATSAL---LKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADD 269
              GA   L   L           Q + +                +      AL  +A D
Sbjct: 391 REQGAIPRLVQLLVRAHQ----DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 446

Query: 270 Q 270
            
Sbjct: 447 V 447

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 36/243 (14%), Positives = 64/243 (26%), Gaps = 44/243 (18%)

Query: 53  ALIRATKDSSNLLAHEAAFALG--------QMQDAEAIPALEAVLNDFSLHPIVRHEAAE 104
           AL     D S  L     + L         Q      +  L  +L   S    V   AA 
Sbjct: 364 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG--SDDINVVTCAAG 421

Query: 105 ALGAIGLESNI------------PLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGS 152
            L  +   +               L++  L +   +++ E    AL  +     S    +
Sbjct: 422 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL----TSRHQDA 477

Query: 153 SMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAII 212
            M + +                + ++ ++L         + A +  +RN     A  A +
Sbjct: 478 EMAQNA----------VRLHYGLPVVVKLLHPPSHWPLIK-ATVGLIRNLALCPANHAPL 526

Query: 213 DSLGATSAL---LKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADD 269
              GA   L   L           Q + +                +      AL  +A D
Sbjct: 527 REQGAIPRLVQLLVRAHQ----DTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582

Query: 270 QSI 272
              
Sbjct: 583 IHN 585

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 37/243 (15%), Positives = 63/243 (25%), Gaps = 44/243 (18%)

Query: 53  ALIRATKDSSNLLAHEAAFALG--------QMQDAEAIPALEAVLNDFSLHPIVRHEAAE 104
           AL     D S  L     + L         Q      +  L  +L   S    V   AA 
Sbjct: 231 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG--SDDINVVTCAAG 288

Query: 105 ALGAIGLESN------------IPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGS 152
            L  +   +               L++  L +   +++ E    AL  +     S    +
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL----TSRHQEA 344

Query: 153 SMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAII 212
            M + +                + ++ + LL          A +  +RN     A  A +
Sbjct: 345 EMAQNAVR----------LHYGLPVVVK-LLHPPSHWPLIKATVGLIRNLALCPANHAPL 393

Query: 213 DSLGATSAL---LKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADD 269
              GA   L   L           Q + +                +      AL  +A D
Sbjct: 394 REQGAIPRLVQLLVRAHQ----DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 449

Query: 270 QSI 272
              
Sbjct: 450 VHN 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.96
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.93
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.93
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.91
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.91
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.91
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.84
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.81
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.81
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.79
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.78
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.78
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.76
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.74
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.73
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.73
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.73
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.73
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.7
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.68
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.66
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	99.62
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.61
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.61
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.6
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.59
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	99.59
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.58
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.58
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.58
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.57
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.56
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.55
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.55
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.55
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.54
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.52
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.52
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.5
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.48
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.47
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.44
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.43
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.41
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.39
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.38
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.38
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.34
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.32
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.31
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.26
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.26
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.25
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.24
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.2
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.19
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.11
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.06
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.04
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.98
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.98
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.98
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.96
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	98.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.88
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.84
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.8
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.76
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.74
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.72
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.64
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.57
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	98.53
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.46
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.36
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.21
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.13
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.84
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.8
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.78
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	97.75
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.58
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.45
3grl_A	651	General vesicular transport factor P115; vesicle t	97.39
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.2
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.03
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	96.98
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.9
3grl_A	651	General vesicular transport factor P115; vesicle t	96.58
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.49
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.4
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.28
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	95.99
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	95.61
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	95.36
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	94.81
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	94.78
2x19_B	963	Importin-13; nuclear transport, protein transport;	94.19
2x1g_F	971	Cadmus; transport protein, developmental protein,	93.78
2x1g_F	971	Cadmus; transport protein, developmental protein,	93.35
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	93.27
2x19_B	963	Importin-13; nuclear transport, protein transport;	93.26
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	93.22
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	92.69
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	91.93
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	91.82
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	91.7
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	91.22
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	91.16
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	90.29
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	89.63
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	88.01
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	87.48
2i9c_A	123	Hypothetical protein RPA1889; structural genomics,	87.06
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	85.86
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	85.54
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	84.75
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	83.69
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	83.06

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.96  E-value=2e-27  Score=204.88  Aligned_cols=245  Identities=18%  Similarity=0.171  Sum_probs=213.8

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCC-CCcHHHHHHh----
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQD-AEAIPALEAV----   88 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~----   88 (318)
                      .+.+++.|.+.|.++++  .+|..|++.|+.++.+.+++.|.+++.|+++.+|..|+++|+.++. ...++.+.++    
T Consensus        21 ~~~~i~~L~~~L~~~~~--~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~   98 (280)
T 1oyz_A           21 KKLNDDELFRLLDDHNS--LKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM   98 (280)
T ss_dssp             HTSCHHHHHHHTTCSSH--HHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHcCCH--HHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            34578999999998876  9999999999999998899999999999999999999999999984 3445544443    


Q ss_pred             -hhcCCCCHHHHHHHHHHHHhcC------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCc
Q 021051           89 -LNDFSLHPIVRHEAAEALGAIG------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFM  161 (318)
Q Consensus        89 -l~~~~~~~~vR~~a~~~L~~~~------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~  161 (318)
                       +.  ++++.||..++.+|+.++      .+..++.|.. +.+|+++.||..++.+|+.++                   
T Consensus        99 ~~~--d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~-~l~d~~~~vR~~a~~aL~~~~-------------------  156 (280)
T 1oyz_A           99 ALN--DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQI-TAFDKSTNVRRATAFAISVIN-------------------  156 (280)
T ss_dssp             HHH--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH-HTTCSCHHHHHHHHHHHHTC--------------------
T ss_pred             Hhc--CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHH-HhhCCCHHHHHHHHHHHHhcC-------------------
Confidence             34  899999999999999987      4567788888 668999999999999999887                   


Q ss_pred             ccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC--ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchH
Q 021051          162 SVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG--GDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAAS  239 (318)
Q Consensus       162 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~  239 (318)
                               ++..++.|...+.++++.  +|..|+.+|+.++  .+..++.|.+.++|+++.+|..|+.+|+.++++.++
T Consensus       157 ---------~~~~~~~L~~~l~d~~~~--vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~  225 (280)
T 1oyz_A          157 ---------DKATIPLLINLLKDPNGD--VRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVL  225 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHH--HHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGH
T ss_pred             ---------CHHHHHHHHHHHcCCCHH--HHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhH
Confidence                     134799999999888776  5999999999998  788999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcC-CCHHHHHHHHHHHHhc
Q 021051          240 AALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKD-PEPIVSQSCEVALSML  297 (318)
Q Consensus       240 ~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~-~~~~vr~~a~~aL~~l  297 (318)
                      +.|...+.++  +  ||..|+++|+.+|++.+++.|.+++.+ +++.++..++.+|.++
T Consensus       226 ~~L~~~l~d~--~--vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~~~~~~~~~l~~~  280 (280)
T 1oyz_A          226 SVLCDELKKN--T--VYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKRS  280 (280)
T ss_dssp             HHHHHHHTSS--S--CCHHHHHHHHHHCCGGGHHHHHHHHTTSSCCHHHHHHHHHHTCC
T ss_pred             HHHHHHhcCc--c--HHHHHHHHHHhcCchhhhHHHHHHHhcCCCcHHHHHHHHHhhcC
Confidence            9999999874  3  999999999999999999999998875 6788888888888654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.93  E-value=1e-24  Score=180.02  Aligned_cols=126  Identities=23%  Similarity=0.305  Sum_probs=84.7

Q ss_pred             cHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCH
Q 021051          174 SVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHP  253 (318)
Q Consensus       174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~  253 (318)
                      .++.|.+.+.++++.  +|..|+.+|+++++...++.|.++++|+++.+|..|+.+|+.++++++++.|..++.++  ++
T Consensus        82 ~~~~L~~~l~~~~~~--vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~--~~  157 (211)
T 3ltm_A           82 AVEPLIKALKDEDGW--VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDE--DG  157 (211)
T ss_dssp             GHHHHHHHTTCSSHH--HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS--SH
T ss_pred             HHHHHHHHHcCCCHH--HHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCC--CH
Confidence            344444444444333  25555555555555566777777777777778888888888887777788888877765  77


Q ss_pred             HHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcc
Q 021051          254 MVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLE  303 (318)
Q Consensus       254 ~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~  303 (318)
                      .||..|+++|+.++++.+++.|.++++++++.||..|..+|..++.....
T Consensus       158 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~  207 (211)
T 3ltm_A          158 WVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHH  207 (211)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence            88888888888888877888888887777788888888888877776553

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.93  E-value=2.1e-24  Score=185.96  Aligned_cols=226  Identities=20%  Similarity=0.150  Sum_probs=193.2

Q ss_pred             CCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-CCcHHH----HHhh
Q 021051           47 GPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-ESNIPL----LKNS  121 (318)
Q Consensus        47 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-~~~~~~----L~~~  121 (318)
                      .+..++.|++.|.|+++.+|..|+++|+.++.+..++.|..++.  ++++.+|..|+.+|+.++. +...+.    |...
T Consensus        21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~--d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~   98 (280)
T 1oyz_A           21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCS--DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM   98 (280)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHT--CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHc--CCCHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            34679999999999999999999999999999889999999999  8999999999999999984 344443    3323


Q ss_pred             hccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHh
Q 021051          122 LVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRN  201 (318)
Q Consensus       122 l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~  201 (318)
                      +.+|+++.||..++++|+.++. ....                     ..+..++.|...+.++++.  +|..|+.+|++
T Consensus        99 ~~~d~~~~vr~~a~~aL~~l~~-~~~~---------------------~~~~~~~~L~~~l~d~~~~--vR~~a~~aL~~  154 (280)
T 1oyz_A           99 ALNDKSACVRATAIESTAQRCK-KNPI---------------------YSPKIVEQSQITAFDKSTN--VRRATAFAISV  154 (280)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHH-HCGG---------------------GHHHHHHHHHHHTTCSCHH--HHHHHHHHHHT
T ss_pred             HhcCCCHHHHHHHHHHHHHHhc-cCCc---------------------ccHHHHHHHHHHhhCCCHH--HHHHHHHHHHh
Confidence            4589999999999999999871 0000                     0123678889999888776  59999999999


Q ss_pred             CCChhHHHHHHHHhCCCCHHHHHHHHHHHhccC--CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhh
Q 021051          202 HGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ--NKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFA  279 (318)
Q Consensus       202 ~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l  279 (318)
                      +++..+++.|.+++.|+++.+|..++.+|+.++  .+.+++.|...+.++  ++.||..|+++|+.++++.+++.|.+.+
T Consensus       155 ~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~~~~~~~~L~~~l  232 (280)
T 1oyz_A          155 INDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRKDKRVLSVLCDEL  232 (280)
T ss_dssp             C---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCCHhhHHHHHHHh
Confidence            999999999999999999999999999999997  678999999999987  8999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhchhhhc
Q 021051          280 KDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       280 ~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      ++++  ||..+..+|+.++....
T Consensus       233 ~d~~--vr~~a~~aL~~i~~~~~  253 (280)
T 1oyz_A          233 KKNT--VYDDIIEAAGELGDKTL  253 (280)
T ss_dssp             TSSS--CCHHHHHHHHHHCCGGG
T ss_pred             cCcc--HHHHHHHHHHhcCchhh
Confidence            8865  89999999999987644

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.91  E-value=3.3e-23  Score=169.59  Aligned_cols=184  Identities=27%  Similarity=0.377  Sum_probs=111.5

Q ss_pred             hHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHH
Q 021051           50 PRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQE  129 (318)
Q Consensus        50 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~  129 (318)
                      ..+.+++.|+++++.+|..|+++|+.++....++.|.+++.  ++++.+|..|+.+|+.++++..++.|.+ +++|+++.
T Consensus        15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~d~~~~   91 (201)
T 3ltj_A           15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALK--DEDAWVRRAAADALGQIGDERAVEPLIK-ALKDEDGW   91 (201)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTCSSHH
T ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHc--CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHcCCCHH
Confidence            44455555555555555555555555555455555555555  4555555555555555555445555555 33444554


Q ss_pred             HHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHH
Q 021051          130 VRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVS  209 (318)
Q Consensus       130 vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~  209 (318)
                      ||                                                             ..|+.+|+++++..+++
T Consensus        92 vr-------------------------------------------------------------~~a~~aL~~~~~~~~~~  110 (201)
T 3ltj_A           92 VR-------------------------------------------------------------QSAAVALGQIGDERAVE  110 (201)
T ss_dssp             HH-------------------------------------------------------------HHHHHHHHHHCCGGGHH
T ss_pred             HH-------------------------------------------------------------HHHHHHHHHhCcHHHHH
Confidence            54                                                             44555555555555666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHH
Q 021051          210 AIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQS  289 (318)
Q Consensus       210 ~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~  289 (318)
                      .|.++++|+++.+|..|+.+|+.++++.+++.|..++.++  ++.||..|+++|+.++++.+++.|..+++++++.||..
T Consensus       111 ~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~  188 (201)
T 3ltj_A          111 PLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDE--DGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKV  188 (201)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHH
Confidence            6666666667777777777777777666777777777665  66777777777777777777777777776667777777


Q ss_pred             HHHHHHhchh
Q 021051          290 CEVALSMLEY  299 (318)
Q Consensus       290 a~~aL~~l~~  299 (318)
                      |..+|.++..
T Consensus       189 A~~aL~~l~~  198 (201)
T 3ltj_A          189 AVNYLETHKS  198 (201)
T ss_dssp             HHHHHHHCC-
T ss_pred             HHHHHHHHHh
Confidence            7777766653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.91  E-value=6.3e-23  Score=167.92  Aligned_cols=188  Identities=27%  Similarity=0.289  Sum_probs=149.7

Q ss_pred             cCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhc
Q 021051           12 KSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLND   91 (318)
Q Consensus        12 ~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~   91 (318)
                      .+.+...+.+++.|.++++  .+|..|+..|+.++.+..++.|.+.+.++++.+|..|+++|+.++....++.|..++. 
T Consensus        10 ~~~~~~~~~~i~~L~~~~~--~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~-   86 (201)
T 3ltj_A           10 HTDPEKVEMYIKNLQDDSY--YVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALK-   86 (201)
T ss_dssp             CCCHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-
T ss_pred             ccCCcchHHHHHHhcCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc-
Confidence            4678899999999999986  9999999999999998999999999999999999999999999999899999999999 


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCC
Q 021051           92 FSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASS  171 (318)
Q Consensus        92 ~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  171 (318)
                       ++++.+|..|+.+|+.++++..++.|.+ +.+|+++.||..++.+|+.++                            .
T Consensus        87 -d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~----------------------------~  136 (201)
T 3ltj_A           87 -DEDGWVRQSAAVALGQIGDERAVEPLIK-ALKDEDWFVRIAAAFALGEIG----------------------------D  136 (201)
T ss_dssp             -CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTCSSHHHHHHHHHHHHHHT----------------------------C
T ss_pred             -CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhC----------------------------C
Confidence             8999999999999999999989999999 668899999999999988776                            1


Q ss_pred             CccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccC
Q 021051          172 CSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ  234 (318)
Q Consensus       172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~  234 (318)
                      +..++.|..++.++++.  +|..|+.+|+.+++..+++.|.++++++++.+|..|+.+|+++.
T Consensus       137 ~~~~~~L~~~l~d~~~~--vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 ERAVEPLIKALKDEDGW--VRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             GGGHHHHHHHTTCSSHH--HHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCCHH--HHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            23455555555444332  35555555555555555555555555555555555555555443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.91  E-value=8e-23  Score=168.60  Aligned_cols=194  Identities=27%  Similarity=0.338  Sum_probs=164.1

Q ss_pred             HHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHh
Q 021051           41 SLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKN  120 (318)
Q Consensus        41 ~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~  120 (318)
                      ......+++.++.|++.|+++++.+|..|++.|+.++....++.|.+++.  ++++.+|..|+.+|+.++++..++.|.+
T Consensus        11 ~~~~~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~--~~~~~vr~~a~~aL~~~~~~~~~~~L~~   88 (211)
T 3ltm_A           11 AAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALK--DEDAWVRRAAADALGQIGDERAVEPLIK   88 (211)
T ss_dssp             -----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT--CSCHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred             hhHhhcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHc--CCCHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            33344567889999999999999999999999999988888999999998  7889999999999999998888898888


Q ss_pred             hhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHH
Q 021051          121 SLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALR  200 (318)
Q Consensus       121 ~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~  200 (318)
                       +++|+++.||..++.+|+.++                            ..+.++.|.+.+.++++.  +|..|+.+|+
T Consensus        89 -~l~~~~~~vr~~a~~aL~~~~----------------------------~~~~~~~L~~~l~d~~~~--vr~~a~~aL~  137 (211)
T 3ltm_A           89 -ALKDEDGWVRQSAAVALGQIG----------------------------DERAVEPLIKALKDEDWF--VRIAAAFALG  137 (211)
T ss_dssp             -HTTCSSHHHHHHHHHHHHHHC----------------------------CGGGHHHHHHHTTCSSHH--HHHHHHHHHH
T ss_pred             -HHcCCCHHHHHHHHHHHHHhC----------------------------cHHHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence             568889999999999999887                            234688888888777765  4999999999


Q ss_pred             hCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh
Q 021051          201 NHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADD  269 (318)
Q Consensus       201 ~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~  269 (318)
                      +++..+.++.|.++++|+++.+|..++.+|+.++++.+++.|..++.++  ++.||..|+++|+.++..
T Consensus       138 ~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          138 EIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETG--TGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             HHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC--CHHHHHHHHHHHHC----
T ss_pred             HcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCC
Confidence            9999889999999999999999999999999999999999999999887  899999999999998754

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.84  E-value=7.2e-19  Score=160.86  Aligned_cols=259  Identities=16%  Similarity=0.188  Sum_probs=211.1

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhcc----CCC---------ChHHHHHHhccCC-CHHHHHHHHHHHhccCC----
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNL----KGP---------GPRDALIRATKDS-SNLLAHEAAFALGQMQD----   78 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~----~~~---------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----   78 (318)
                      .++.|++.|.++++  .+|..|+..|+++    ..+         ..++.|++.|.++ ++.+|..|+++|+.+..    
T Consensus        21 ~l~~l~~~l~s~~~--~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~   98 (450)
T 2jdq_A           21 ITSDMIEMIFSKSP--EQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL   98 (450)
T ss_dssp             -CHHHHHHHHSSCH--HHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH
T ss_pred             cHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence            37889999998876  8999999999875    222         6789999999888 89999999999988754    


Q ss_pred             -------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHH
Q 021051           79 -------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALER  140 (318)
Q Consensus        79 -------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~  140 (318)
                             ...++.|.+++.  ++++.+|..|+.+|+++..           .+.++.|...+..++++.+|..++++|++
T Consensus        99 ~~~~~~~~~~i~~L~~lL~--~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~  176 (450)
T 2jdq_A           99 QTRIVIQAGAVPIFIELLS--SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN  176 (450)
T ss_dssp             HHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence                   468999999999  7899999999999998764           35788999945435899999999999999


Q ss_pred             HHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----------hHHH
Q 021051          141 IEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----------EAVS  209 (318)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----------~~~~  209 (318)
                      +.. . ..+...       ..       . ....++.|..++.+++..  +|..++++|+++...           ..++
T Consensus       177 l~~-~-~~~~~~-------~~-------~-~~~~l~~L~~~l~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  237 (450)
T 2jdq_A          177 LCR-G-KSPPPE-------FA-------K-VSPCLNVLSWLLFVSDTD--VLADACWALSYLSDGPNDKIQAVIDAGVCR  237 (450)
T ss_dssp             HHC-C-SSSCCC-------GG-------G-TGGGHHHHHHHTTCCCHH--HHHHHHHHHHHHTSSSHHHHHHHHHTTTHH
T ss_pred             HhC-C-CCCCCC-------HH-------H-HHHHHHHHHHHHccCCHH--HHHHHHHHHHHHHCCCcHHHHHHHHcCcHH
Confidence            981 1 000000       00       0 135799999999887765  599999999998652           4788


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----------
Q 021051          210 AIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD----------  268 (318)
Q Consensus       210 ~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----------  268 (318)
                      .|.+++.++++.++..++.+|+.+..           ...++.|+.++.++  ++.+|..|+++|+++..          
T Consensus       238 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~  315 (450)
T 2jdq_A          238 RLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKEACWTISNITAGNRAQIQTVI  315 (450)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999998764           25789999999986  89999999999999963          


Q ss_pred             -hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          269 -DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       269 -~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                       .+.++.|.+++.++++.||..|+++|.++...
T Consensus       316 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          316 DANIFPALISILQTAEFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence             25678888999999999999999999999765

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.81  E-value=1e-17  Score=153.27  Aligned_cols=263  Identities=16%  Similarity=0.168  Sum_probs=213.1

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC-----
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA-----   79 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----   79 (318)
                      ..++.|++.|.+++ +..+|..|++.++.+..           ...++.|.++++++++.+|..|+++|+.+...     
T Consensus        64 ~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~  142 (450)
T 2jdq_A           64 GVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR  142 (450)
T ss_dssp             THHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence            67889999999883 24899999999988754           46899999999999999999999999987642     


Q ss_pred             ------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           80 ------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        80 ------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                            ..++.|..++.+ ++++.+|..++.+|+++..           ...++.|.+ +..++++.++..+.++|+++.
T Consensus       143 ~~~~~~~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~v~~~a~~~L~~l~  220 (450)
T 2jdq_A          143 DYVLDCNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSW-LLFVSDTDVLADACWALSYLS  220 (450)
T ss_dssp             HHHHHTTCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHH-HTTCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HHccCCHHHHHHHHHHHHHHH
Confidence                  578999999992 4789999999999998752           246888999 667889999999999999887


Q ss_pred             hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----------hHHHHH
Q 021051          143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----------EAVSAI  211 (318)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----------~~~~~l  211 (318)
                      .  ..... ...+              .....++.|+.++.++++.  +|..|+.+|+++...           ..++.|
T Consensus       221 ~--~~~~~-~~~~--------------~~~~~i~~L~~ll~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  281 (450)
T 2jdq_A          221 D--GPNDK-IQAV--------------IDAGVCRRLVELLMHNDYK--VVSPALRAVGNIVTGDDIQTQVILNCSALQSL  281 (450)
T ss_dssp             S--SSHHH-HHHH--------------HHTTTHHHHHHHTTCSCHH--HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHH
T ss_pred             C--CCcHH-HHHH--------------HHcCcHHHHHHHHCCCchh--HHHHHHHHHHHHhhCChHHHHHHHHCccHHHH
Confidence            1  00000 0000              0123689999999877765  499999999988542           478889


Q ss_pred             HHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---Ch--------
Q 021051          212 IDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---DD--------  269 (318)
Q Consensus       212 ~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~~--------  269 (318)
                      .+++.++++.+|..|+.+|+.+..           ...++.|+.++.+.  ++.+|..|+++|+++.   ++        
T Consensus       282 ~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~l~~  359 (450)
T 2jdq_A          282 LHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSGGSAEQIKYLVE  359 (450)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            999999999999999999999863           35788999999987  8999999999999983   22        


Q ss_pred             -hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          270 -QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       270 -~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                       +.++.|.++++++++.++..|.++|..+-....
T Consensus       360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence             367888999999999999999999998876543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.81  E-value=4e-18  Score=159.61  Aligned_cols=261  Identities=16%  Similarity=0.208  Sum_probs=213.6

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhccCC-CHHHHHHHHHHHhccCC----
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATKDS-SNLLAHEAAFALGQMQD----   78 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----   78 (318)
                      ..++.|++.|.++++  .+|..|+..|+.+..            ...++.|+++|.++ ++.+|..|+++|+.+..    
T Consensus        87 ~~i~~lv~~L~s~~~--~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           87 QELPQMTQQLNSDDM--QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             CCHHHHHHHHSCSSH--HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            468889999998875  899999999987632            25789999999887 89999999999998875    


Q ss_pred             -------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHH
Q 021051           79 -------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALER  140 (318)
Q Consensus        79 -------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~  140 (318)
                             ..+++.|+.++.  ++++.+|..|+.+|+++..           ...++.|.. +..++++.++..++++|..
T Consensus       165 ~~~~~~~~g~i~~Lv~lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~  241 (530)
T 1wa5_B          165 QTKVVVDADAVPLFIQLLY--TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG-LFNSNKPSLIRTATWTLSN  241 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHH--HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH-GGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHH-HhccCCHHHHHHHHHHHHH
Confidence                   367999999999  7899999999999998853           257889999 5577999999999999999


Q ss_pred             HHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----------hHHH
Q 021051          141 IEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----------EAVS  209 (318)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----------~~~~  209 (318)
                      +..  +..+...       .        ......++.|+.++.++++.  +|..++.+|+++...           ..++
T Consensus       242 L~~--~~~~~~~-------~--------~~~~~~l~~L~~lL~~~d~~--v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~  302 (530)
T 1wa5_B          242 LCR--GKKPQPD-------W--------SVVSQALPTLAKLIYSMDTE--TLVDACWAISYLSDGPQEAIQAVIDVRIPK  302 (530)
T ss_dssp             HHC--CSSSCCC-------H--------HHHGGGHHHHHHHTTCCCHH--HHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred             HhC--CCCCCCc-------H--------HHHHhHHHHHHHHHcCCCHH--HHHHHHHHHHHHhCCCHHHHHHHHhcCcHH
Confidence            871  1000000       0        00134789999999887765  599999999988531           5678


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----------
Q 021051          210 AIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD----------  268 (318)
Q Consensus       210 ~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----------  268 (318)
                      .|..++.++++.++..|+.+|+.+..           ...++.|+.++.+.  ++.+|..|+++|+.+..          
T Consensus       303 ~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~  380 (530)
T 1wa5_B          303 RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNITAGNTEQIQAVI  380 (530)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            89999999999999999999999863           35788999999987  89999999999999963          


Q ss_pred             -hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          269 -DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       269 -~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                       .+.++.|..++.++++.+|..|+++|.++.....
T Consensus       381 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~  415 (530)
T 1wa5_B          381 DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL  415 (530)
T ss_dssp             HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence             2467888999988999999999999999976543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.79  E-value=2.8e-17  Score=153.82  Aligned_cols=262  Identities=16%  Similarity=0.143  Sum_probs=213.7

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC-----
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA-----   79 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----   79 (318)
                      ..++.|+++|.+++ ++.+|..|+++|+.+..           ..+++.|+++|.++++.+|..|+++|+.+...     
T Consensus       130 g~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~  208 (530)
T 1wa5_B          130 GVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  208 (530)
T ss_dssp             TCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence            47889999999873 24899999999998865           46789999999999999999999999987642     


Q ss_pred             ------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC-----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           80 ------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE-----------SNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        80 ------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                            ..++.|..++.  +.++.+|..|+.+|+++...           ..++.|.. +..++++.++..++++|+.+.
T Consensus       209 ~~~~~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~L~  285 (530)
T 1wa5_B          209 DYVLQCNAMEPILGLFN--SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK-LIYSMDTETLVDACWAISYLS  285 (530)
T ss_dssp             HHHHHTTCHHHHHHGGG--SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHH-HTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHH-HHcCCCHHHHHHHHHHHHHHh
Confidence                  57999999999  78999999999999987532           46888999 668889999999999999987


Q ss_pred             hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHH
Q 021051          143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAI  211 (318)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l  211 (318)
                      .   ........+              .....++.|+.++.++++.  +|..|+.+|+++..           ...++.|
T Consensus       286 ~---~~~~~~~~~--------------~~~~~v~~Lv~lL~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  346 (530)
T 1wa5_B          286 D---GPQEAIQAV--------------IDVRIPKRLVELLSHESTL--VQTPALRAVGNIVTGNDLQTQVVINAGVLPAL  346 (530)
T ss_dssp             S---SCHHHHHHH--------------HHTTCHHHHHHGGGCSCHH--HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred             C---CCHHHHHHH--------------HhcCcHHHHHHHHCCCChh--hHHHHHHHHHHHHcCCHHHHHHHHHcchHHHH
Confidence            1   000000000              0124689999999887765  49999999999863           2577888


Q ss_pred             HHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---Ch--------
Q 021051          212 IDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---DD--------  269 (318)
Q Consensus       212 ~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~~--------  269 (318)
                      ..++.++++.+|..|+.+|+.+..           ...++.|+.++.+.  ++.+|..|+++|+.+.   .+        
T Consensus       347 ~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~l  424 (530)
T 1wa5_B          347 RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA--EYKTKKEACWAISNASSGGLQRPDIIRYL  424 (530)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTTTCTHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            999999999999999999999863           35688999999876  8999999999999983   22        


Q ss_pred             ---hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          270 ---QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       270 ---~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                         ++++.|..++.++++.++..+.++|..+-....
T Consensus       425 ~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~  460 (530)
T 1wa5_B          425 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE  460 (530)
T ss_dssp             HHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence               368889999999999999999999998876543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.78  E-value=1.9e-17  Score=154.93  Aligned_cols=270  Identities=17%  Similarity=0.193  Sum_probs=214.8

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhccCCC-HHHHHHHHHHHhccCCC--
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATKDSS-NLLAHEAAFALGQMQDA--   79 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~~--   79 (318)
                      ...++.|++.|.++++  .+|..|++.|+.+..            ...++.|+++|.+++ +.+|..|+++|+.+...  
T Consensus        73 ~~~l~~lv~~L~s~~~--~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~  150 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDN--NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS  150 (528)
T ss_dssp             --CHHHHHHHHTSSCH--HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence            3468899999998875  899999999977621            257999999998876 99999999999987753  


Q ss_pred             ---------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051           80 ---------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALE  139 (318)
Q Consensus        80 ---------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~  139 (318)
                               .+++.|+.++.  ++++.+|..|+.+|+++..           ...++.|...+..++++.++..++++|.
T Consensus       151 ~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~  228 (528)
T 4b8j_A          151 ENTKVVIDHGAVPIFVKLLG--SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS  228 (528)
T ss_dssp             HHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence                     47999999999  7899999999999998852           2468888885547889999999999999


Q ss_pred             HHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----------hHH
Q 021051          140 RIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----------EAV  208 (318)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----------~~~  208 (318)
                      ++.. . .... .       ..        .....++.|..++.++++.+  +..++.+|+++...           ..+
T Consensus       229 ~L~~-~-~~~~-~-------~~--------~~~~~l~~L~~lL~~~~~~v--~~~a~~aL~~l~~~~~~~~~~~~~~g~v  288 (528)
T 4b8j_A          229 NFCR-G-KPQP-S-------FE--------QTRPALPALARLIHSNDEEV--LTDACWALSYLSDGTNDKIQAVIEAGVC  288 (528)
T ss_dssp             HHHC-S-SSCC-C-------HH--------HHTTHHHHHHHHTTCCCHHH--HHHHHHHHHHHTSSCHHHHHHHHHTTCH
T ss_pred             HHHc-C-CCCC-c-------HH--------HHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHcCCHHHHHHHHHcCHH
Confidence            9981 0 0000 0       00        01347899999998877664  99999999988642           467


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC--Ch------
Q 021051          209 SAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA--DD------  269 (318)
Q Consensus       209 ~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~------  269 (318)
                      +.|.+++.++++.++..|+.+|+.+..           ..+++.|+.++.+.. ++.+|..|+++|+++.  .+      
T Consensus       289 ~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~A~~~L~nl~~~~~~~~~~~  367 (528)
T 4b8j_A          289 PRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL-KKSIKKEACWTISNITAGNKDQIQAV  367 (528)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC-cHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            889999999999999999999998864           356899999998642 7899999999999985  22      


Q ss_pred             ---hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcc
Q 021051          270 ---QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYL  309 (318)
Q Consensus       270 ---~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~  309 (318)
                         +.++.|..++.+.++.++..|+++|.++....+.+...|.
T Consensus       368 ~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  410 (528)
T 4b8j_A          368 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYL  410 (528)
T ss_dssp             HHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence               4578899999888999999999999999887433324443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.78  E-value=2.2e-18  Score=161.31  Aligned_cols=262  Identities=19%  Similarity=0.209  Sum_probs=212.8

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC-----------ChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKGP-----------GPRDALIRATKDSSNLLAHEAAFALGQMQD------   78 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------   78 (318)
                      ..++.|+++|.+++ ++.+|..|+++|+.+...           .+++.|+++|.++++.+|..|+++|+.+..      
T Consensus       117 g~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~  195 (528)
T 4b8j_A          117 GVVPRFVQFLTRED-FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR  195 (528)
T ss_dssp             TCHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence            47889999999886 248999999999988662           589999999999999999999999998752      


Q ss_pred             -----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 021051           79 -----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE----------SNIPLLKNSLVSDPAQEVRETCELALERIEK  143 (318)
Q Consensus        79 -----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~  143 (318)
                           ...++.|+.++.. +.++.++..++.+|+++...          ..++.|.. ++.++++.++..++++|+++..
T Consensus       196 ~~i~~~g~l~~Ll~lL~~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~aL~~l~~  273 (528)
T 4b8j_A          196 DLVLANGALLPLLAQLNE-HTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALAR-LIHSNDEEVLTDACWALSYLSD  273 (528)
T ss_dssp             HHHHHTTCHHHHHHTCCT-TCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHH-HTTCCCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCcHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHc
Confidence                 2468899999942 78999999999999987532          47889999 6688999999999999998871


Q ss_pred             hhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHHH
Q 021051          144 LKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAII  212 (318)
Q Consensus       144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~  212 (318)
                         ........+              .....++.|+.++.++++.  ++..|+.+|+++..           ...++.|.
T Consensus       274 ---~~~~~~~~~--------------~~~g~v~~Lv~lL~~~~~~--v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~  334 (528)
T 4b8j_A          274 ---GTNDKIQAV--------------IEAGVCPRLVELLLHPSPS--VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLL  334 (528)
T ss_dssp             ---SCHHHHHHH--------------HHTTCHHHHHHHTTCSCHH--HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH
T ss_pred             ---CCHHHHHHH--------------HHcCHHHHHHHHHcCCChh--HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHH
Confidence               000000000              0124689999999988765  59999999999864           24678899


Q ss_pred             HHhCCC-CHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh-----------
Q 021051          213 DSLGAT-SALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD-----------  269 (318)
Q Consensus       213 ~~l~d~-~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-----------  269 (318)
                      .++.++ ++.++..|+.+|+.+..           ...++.|+.++.+.  ++.+|..|+++|+++...           
T Consensus       335 ~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  412 (528)
T 4b8j_A          335 SLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGGSHDQIKYLVS  412 (528)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            999888 99999999999998752           25678999999887  899999999999998532           


Q ss_pred             -hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051          270 -QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQ  301 (318)
Q Consensus       270 -~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~  301 (318)
                       ++++.|..++.++++.++..+..+|.++-...
T Consensus       413 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (528)
T 4b8j_A          413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVG  445 (528)
T ss_dssp             TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence             46888999999999999999999999986544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.76  E-value=3.9e-17  Score=157.42  Aligned_cols=264  Identities=19%  Similarity=0.254  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHhccCC---CChHHHHHHhcc---CCCHHHHHHHHHHHhccCCCC---cHHHHHHhhhcCCCC--------
Q 021051           33 SERFRALFSLRNLKG---PGPRDALIRATK---DSSNLLAHEAAFALGQMQDAE---AIPALEAVLNDFSLH--------   95 (318)
Q Consensus        33 ~~r~~A~~~l~~~~~---~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~---~~~~L~~~l~~~~~~--------   95 (318)
                      |.+..|+..||-+..   .+....|.++|.   +.++.+|..|+.+||-++...   +...|.+.+.  +++        
T Consensus       373 ~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~--~~~~~~~~~~~  450 (963)
T 4ady_A          373 WAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIV--ENSGTSGDEDV  450 (963)
T ss_dssp             HHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH--HHSSCCSCHHH
T ss_pred             HHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc--Ccccccccccc
Confidence            556666666655432   345555555554   445666666666666554322   3444555554  222        


Q ss_pred             HHHHHHHHHHHHhc----CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC-cc-cccccc---CC--CCcccC
Q 021051           96 PIVRHEAAEALGAI----GLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG-SD-GSSMTE---RS--PFMSVD  164 (318)
Q Consensus        96 ~~vR~~a~~~L~~~----~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~-~~-~~~~l~---~~--~~~~~~  164 (318)
                      +.+|.+|+.+||-+    +++++++.|.. ...++++.+|..++.+||.+.  ..+. .. +..++.   ..  ......
T Consensus       451 ~~ir~gAaLGLGla~~GS~~eev~e~L~~-~L~dd~~~~~~~AalALGli~--vGTgn~~ai~~LL~~~~e~~~e~vrR~  527 (963)
T 4ady_A          451 DVLLHGASLGIGLAAMGSANIEVYEALKE-VLYNDSATSGEAAALGMGLCM--LGTGKPEAIHDMFTYSQETQHGNITRG  527 (963)
T ss_dssp             HHHHHHHHHHHHHHSTTCCCHHHHHHHHH-HHHTCCHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHhcCCHHHHHHHHHHHhhhh--cccCCHHHHHHHHHHHhccCcHHHHHH
Confidence            45566666666553    23344555555 333444555555555555542  0000 00 000000   00  000000


Q ss_pred             CC-----CCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHH----hCCChhHHHHHHH-HhCCCCHHHHHHHHHHHhc--
Q 021051          165 PA-----APASSCSSVDMLREVLLGEEKGMYERYAALFALR----NHGGDEAVSAIID-SLGATSALLKHEVAYVLGQ--  232 (318)
Q Consensus       165 ~~-----~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~----~~~~~~~~~~l~~-~l~d~~~~vr~~a~~~L~~--  232 (318)
                      .+     ..++.++.++.+++.|...+.+. +|+.++.+++    ..|+..+++.|++ +.+|.+..+|..|+.+||.  
T Consensus       528 aalgLGll~~g~~e~~~~li~~L~~~~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~  606 (963)
T 4ady_A          528 LAVGLALINYGRQELADDLITKMLASDESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVL  606 (963)
T ss_dssp             HHHHHHHHTTTCGGGGHHHHHHHHHCSCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhCCChHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhc
Confidence            00     01234678888988887655553 7999998887    5678888887766 4578889999999999997  


Q ss_pred             cCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC----ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcc
Q 021051          233 LQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA----DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLE  303 (318)
Q Consensus       233 ~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~  303 (318)
                      +++++..+.++..+.+. .++.||+.++.|||.++    .+++++.|..+..|.+.+||..|+.||+.++.++..
T Consensus       607 ~g~~e~v~rlv~~L~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn  680 (963)
T 4ady_A          607 LRDYTTVPRIVQLLSKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE  680 (963)
T ss_dssp             SSSCSSHHHHTTTGGGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred             cCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence            57778889998877653 38999999999999993    567999999999999999999999999999987653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.74  E-value=4.5e-17  Score=151.73  Aligned_cols=279  Identities=18%  Similarity=0.135  Sum_probs=209.1

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------   78 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------   78 (318)
                      ..++.|+++|.+.+. ..++..|+++|+++..           ..+++.|+++|.++++.+|..|+++|+.+..      
T Consensus       100 G~ip~LV~lL~~~~~-~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r  178 (510)
T 3ul1_B          100 GLIPKFVSFLGKTDC-SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  178 (510)
T ss_dssp             THHHHHHHHTTCTTC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHCCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            368899999986652 4899999999998743           3579999999999999999999999998753      


Q ss_pred             -----CCcHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051           79 -----AEAIPALEAVLNDFS---LHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALE  139 (318)
Q Consensus        79 -----~~~~~~L~~~l~~~~---~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~  139 (318)
                           ...++.|+.++...+   ....+.+.+..+|+++..           ...++.|.+ +..++++.++..++++|.
T Consensus       179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~-LL~~~~~~v~~~A~~aL~  257 (510)
T 3ul1_B          179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR-LLHHNDPEVLADSCWAIS  257 (510)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHH-HTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHH-HHhcCCHHHHHHHHHHHH
Confidence                 256889999998321   123456677777776531           125678888 668999999999999999


Q ss_pred             HHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--h---------hHH
Q 021051          140 RIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--D---------EAV  208 (318)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--~---------~~~  208 (318)
                      .+..   .........              .....++.|+.++.+++..+  +..++.+++++..  +         .++
T Consensus       258 ~L~~---~~~~~~~~i--------------~~~g~i~~Lv~lL~~~~~~v--~~~al~aL~nl~~~~~~~~~~i~~~g~l  318 (510)
T 3ul1_B          258 YLTD---GPNERIEMV--------------VKKGVVPQLVKLLGATELPI--VTPALRAIGNIVTGTDEQTQKVIDAGAL  318 (510)
T ss_dssp             HHTS---SCHHHHHHH--------------HTTTCHHHHHHHHTCSCHHH--HHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred             HHhh---chhhhHHHH--------------HhcccchhhhhhhcCCChhh--hhHHHHHHHHhhcCCHHHHHHHhhccch
Confidence            8871   000000000              01346899999999887765  9999999998743  2         344


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---C------
Q 021051          209 SAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---D------  268 (318)
Q Consensus       209 ~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~------  268 (318)
                      +.|..++.++++.++..|+.+|+.+..           ...++.|+.++.+.  ++.+|.+|+++|+++.   +      
T Consensus       319 ~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~~~~~~~~~~  396 (510)
T 3ul1_B          319 AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSGGTVEQIVY  396 (510)
T ss_dssp             GGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHccCCHHHHHH
Confidence            556677889999999999999998753           35789999999987  8999999999999873   2      


Q ss_pred             ---hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc--chhhhcccccCCCCC
Q 021051          269 ---DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL--EKSFEYLFMQAPLMQ  317 (318)
Q Consensus       269 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~~~~~~~  317 (318)
                         .++++.|.+++.++++.++..+..+|.+|-....  ++.-.|-.++++|||
T Consensus       397 L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg  450 (510)
T 3ul1_B          397 LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG  450 (510)
T ss_dssp             HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTH
T ss_pred             HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCc
Confidence               2468889999999999999999999998754211  111345556677765

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.73  E-value=1.2e-16  Score=149.54  Aligned_cols=281  Identities=17%  Similarity=0.126  Sum_probs=212.3

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-----
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD-----   78 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----   78 (318)
                      ...++.|+++|...+ +..++..|+++|..+..           ..+++.|++++.++++.+|..|+++|+.+..     
T Consensus       118 ~G~ip~Lv~lL~~~~-~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~  196 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF  196 (529)
T ss_dssp             TTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence            346888999997655 24899999999998754           3578999999999999999999999998753     


Q ss_pred             ------CCcHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHH
Q 021051           79 ------AEAIPALEAVLNDFS---LHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELAL  138 (318)
Q Consensus        79 ------~~~~~~L~~~l~~~~---~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL  138 (318)
                            ..+++.|+.++...+   ....+.+.+..+|+.+..           ...+|.|.. +..++++.++..++++|
T Consensus       197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~-LL~~~~~~v~~~a~~aL  275 (529)
T 3tpo_A          197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR-LLHHNDPEVLADSCWAI  275 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHH-HTTSSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHH-HhcCCcHHHHHHHHHHH
Confidence                  246889999998321   123456677777776531           125678888 66899999999999999


Q ss_pred             HHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhH
Q 021051          139 ERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEA  207 (318)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~  207 (318)
                      ..+..   ........              ......++.|+.++.+++..+  +..++.+|+++..           ..+
T Consensus       276 ~~l~~---~~~~~~~~--------------v~~~g~i~~Lv~lL~~~~~~v--~~~a~~aL~nl~~~~~~~~~~i~~~g~  336 (529)
T 3tpo_A          276 SYLTD---GPNERIEM--------------VVKKGVVPQLVKLLGATELPI--VTPALRAIGNIVTGTDEQTQKVIDAGA  336 (529)
T ss_dssp             HHHHS---SCHHHHHH--------------HHTTTCHHHHHHHHTCSCHHH--HHHHHHHHHHHTTSCHHHHHHHHHTTG
T ss_pred             HHhhh---hhhhhHHH--------------HHhccchHHHHHHhcCCChhH--HHHHHHHHHHHHccchHHHHHHhhccc
Confidence            98871   00000000              001347899999999887764  9999999998843           245


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---Ch----
Q 021051          208 VSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---DD----  269 (318)
Q Consensus       208 ~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~~----  269 (318)
                      ++.|..++.++++.++..|+.+|+.+..           ...+|.|+.++.+.  ++.+|..|+++|+++.   ++    
T Consensus       337 l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~~~~~~~~~  414 (529)
T 3tpo_A          337 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTSGGTVEQIV  414 (529)
T ss_dssp             GGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            6778889999999999999999998742           35789999999987  8999999999999873   22    


Q ss_pred             -----hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc--chhhhcccccCCCCCC
Q 021051          270 -----QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL--EKSFEYLFMQAPLMQV  318 (318)
Q Consensus       270 -----~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~~~~~~~~  318 (318)
                           ++++.|.+++..+++.++..+..+|.+|-.-..  ++.-.|..++++|||+
T Consensus       415 ~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl  470 (529)
T 3tpo_A          415 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL  470 (529)
T ss_dssp             HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred             HHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcH
Confidence                 468889999999999999999999998753211  1113455677777763

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.73  E-value=1.3e-17  Score=157.58  Aligned_cols=122  Identities=16%  Similarity=0.172  Sum_probs=87.8

Q ss_pred             ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC--------c
Q 021051          173 SSVDMLREVLLGEEKGMYERYAALFALRNHGG--------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN--------K  236 (318)
Q Consensus       173 ~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~--------~  236 (318)
                      ...+.+...+.+++..  +|..|+.+++.+..        +..++.+.+++.++++.+|..++.+++.+..        +
T Consensus       441 ~l~~~l~~~l~d~~~~--Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~  518 (588)
T 1b3u_A          441 KLNSLCMAWLVDHVYA--IREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTK  518 (588)
T ss_dssp             HHHHHHHHGGGCSSHH--HHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHH--HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3567777777776654  48888888776532        2455666666677888888888888877653        3


Q ss_pred             chHHHHHHHHhccCCCHHHHHHHHHHHhccCC--------hhhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051          237 AASAALSDVLRNVNEHPMVRHEAAEALGSIAD--------DQSIGLLKEFAKDPEPIVSQSCEVALSMLE  298 (318)
Q Consensus       237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~  298 (318)
                      ..+|.|...+.|+  ++.||..++++|+.+..        +..++.|.+++.|+++.||..|..|++.+.
T Consensus       519 ~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          519 HMLPTVLRMAGDP--VANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhCCCC--CchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            4667777777776  78888888888888753        245667777777888888888888887764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.73  E-value=8.3e-17  Score=149.92  Aligned_cols=267  Identities=18%  Similarity=0.212  Sum_probs=206.7

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhcc-CCCHHHHHHHHHHHhccCC----
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATK-DSSNLLAHEAAFALGQMQD----   78 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----   78 (318)
                      .+++.+++.+.++++  ..+..|+..++++-+            ...++.|+++|+ ++++.++..|+|+|+.+..    
T Consensus        57 ~~i~~~v~~l~s~d~--~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e  134 (510)
T 3ul1_B           57 WSVEDIVKGINSNNL--ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE  134 (510)
T ss_dssp             CCHHHHHHHHTSSCH--HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             hhHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence            368999999999987  899999998877522            146899999996 5568999999999998742    


Q ss_pred             -------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCC-----HHHHHHHH
Q 021051           79 -------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPA-----QEVRETCE  135 (318)
Q Consensus        79 -------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~-----~~vr~~a~  135 (318)
                             ..++|.|+.+|.  ++++.+|..|+.+|+++..           ...++.|.. +...++     ..+.+.+.
T Consensus       135 ~~~~vv~~GaIp~Lv~lL~--s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~-lL~~~~~~~~~~~~~~~a~  211 (510)
T 3ul1_B          135 QTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA-LLAVPDLSTLACGYLRNLT  211 (510)
T ss_dssp             HHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH-HTCSSCGGGSCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHH-HHHhccchhhhHHHHHHHH
Confidence                   257999999999  8999999999999998852           346778888 444433     45677888


Q ss_pred             HHHHHHHhhhccCccccccccCCCCcccCCCCCC-CCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------
Q 021051          136 LALERIEKLKASGSDGSSMTERSPFMSVDPAAPA-SSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------  204 (318)
Q Consensus       136 ~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------  204 (318)
                      +++..+..   ...               +.... .....++.|.+++.+++..+  +..++++|.++..          
T Consensus       212 ~~L~nl~~---~~~---------------~~~~~~~~~~~lp~L~~LL~~~~~~v--~~~A~~aL~~L~~~~~~~~~~i~  271 (510)
T 3ul1_B          212 WTLSNLCR---NKN---------------PAPPLDAVEQILPTLVRLLHHNDPEV--LADSCWAISYLTDGPNERIEMVV  271 (510)
T ss_dssp             HHHHHHHC---CCS---------------SCCCHHHHHHHHHHHHHHTTCSCHHH--HHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHhh---ccc---------------chhHHHHHHhHHHHHHHHHhcCCHHH--HHHHHHHHHHHhhchhhhHHHHH
Confidence            88888761   000               00000 01246788999998887764  9999999998753          


Q ss_pred             -hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----
Q 021051          205 -DEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD----  268 (318)
Q Consensus       205 -~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----  268 (318)
                       ...++.|.+++.++++.++..++.+|+.+..           ..+++.|..++.+.  ++.+|..|+++|+++..    
T Consensus       272 ~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~--~~~v~~~A~~aL~nl~a~~~~  349 (510)
T 3ul1_B          272 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP--KTNIQKEATWTMSNITAGRQD  349 (510)
T ss_dssp             TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS--SHHHHHHHHHHHHHHTTSCHH
T ss_pred             hcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC--CHHHHHHHHHHHHHHHcCcHH
Confidence             2467889999999999999999999998743           34566777788876  89999999999999862    


Q ss_pred             -------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcc
Q 021051          269 -------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYL  309 (318)
Q Consensus       269 -------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~  309 (318)
                             .+.++.|..++.+.+..+|.+|+++|.++....+.++..|+
T Consensus       350 ~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L  397 (510)
T 3ul1_B          350 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL  397 (510)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence                   24688899999999999999999999999877665534443

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.73  E-value=2.4e-17  Score=155.66  Aligned_cols=260  Identities=14%  Similarity=0.133  Sum_probs=176.1

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccCCCHHHHHHHHHHHhccCC--------C
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKDSSNLLAHEAAFALGQMQD--------A   79 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~   79 (318)
                      ..++.+..++.|+++  .+|..|+..++.+..        +..++.+..+++|+++.+|..|+.+|+.+..        .
T Consensus       164 ~l~~~l~~l~~d~~~--~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  241 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTP--MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEA  241 (588)
T ss_dssp             HHHHHHHHHHTCSCH--HHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            455666777788875  999999999988742        3567888888899999999999999987652        1


Q ss_pred             CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC--------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccc
Q 021051           80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL--------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDG  151 (318)
Q Consensus        80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~  151 (318)
                      ..++.+..++.  ++++.+|..++.+|+.+..        +..++.+.+ +.+|+++.||..++.+++.+..........
T Consensus       242 ~~~~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~  318 (588)
T 1b3u_A          242 LVMPTLRQAAE--DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN-LMKDCEAEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             HTHHHHHHHHT--CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence            35677777777  8999999999999988753        356788888 668999999999999999987211000000


Q ss_pred             cccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--------hhHHHHHHHHhCCCCHHHH
Q 021051          152 SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--------DEAVSAIIDSLGATSALLK  223 (318)
Q Consensus       152 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr  223 (318)
                      ..      +          .+..++.+...+.++++.  +|..++.+++.+..        +..++.+...++|.++.+|
T Consensus       319 ~~------~----------~~~l~p~l~~~l~d~~~~--vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr  380 (588)
T 1b3u_A          319 NV------I----------MSQILPCIKELVSDANQH--VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVR  380 (588)
T ss_dssp             HH------H----------HHTHHHHHHHHHTCSCHH--HHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHH
T ss_pred             hH------H----------HHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHH
Confidence            00      0          012456666666666554  47777777666531        2344556666677777777


Q ss_pred             HHHHHHHhccCC--------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC--------ChhhHHHHHHhhcCCCHHHH
Q 021051          224 HEVAYVLGQLQN--------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA--------DDQSIGLLKEFAKDPEPIVS  287 (318)
Q Consensus       224 ~~a~~~L~~~~~--------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~~~~~~vr  287 (318)
                      ..++.+++.+..        +..+|.|...+.+.  +|.+|..++.+++.+.        .+..++.+...+.|++..||
T Consensus       381 ~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr  458 (588)
T 1b3u_A          381 LNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA--KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIR  458 (588)
T ss_dssp             HHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            777666665432        23556666666654  6777777777766653        13456666666677777777


Q ss_pred             HHHHHHHHhchhh
Q 021051          288 QSCEVALSMLEYE  300 (318)
Q Consensus       288 ~~a~~aL~~l~~~  300 (318)
                      ..|..+++.+...
T Consensus       459 ~~a~~~l~~l~~~  471 (588)
T 1b3u_A          459 EAATSNLKKLVEK  471 (588)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777666443

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.70  E-value=5.2e-16  Score=145.20  Aligned_cols=267  Identities=18%  Similarity=0.212  Sum_probs=207.0

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhcc-CCCHHHHHHHHHHHhccCC----
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATK-DSSNLLAHEAAFALGQMQD----   78 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----   78 (318)
                      ..++.+++.+.++++  ..+..|+..+.++-+            ...++.|+++|. +.++.++..|+|+|+.+..    
T Consensus        76 ~~l~~lv~~l~s~d~--~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~  153 (529)
T 3tpo_A           76 WSVEDIVKGINSNNL--ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE  153 (529)
T ss_dssp             CCHHHHHHHHTSSCH--HHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence            367889999999987  899999988876421            257888999995 5679999999999998753    


Q ss_pred             -------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCC-----HHHHHHHH
Q 021051           79 -------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPA-----QEVRETCE  135 (318)
Q Consensus        79 -------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~-----~~vr~~a~  135 (318)
                             ..++|.|+.++.  ++++.+|..|+.+|+++..           ...++.|.. ++..++     ..+.+.+.
T Consensus       154 ~~~~vv~~Gaip~Lv~LL~--s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~-lL~~~~~~~~~~~~~~~a~  230 (529)
T 3tpo_A          154 QTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLA-LLAVPDLSTLACGYLRNLT  230 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH-TTCSSCGGGSCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHH-HHhccchhHhHHHHHHHHH
Confidence                   257899999999  8999999999999998852           346788888 444433     45677888


Q ss_pred             HHHHHHHhhhccCccccccccCCCCcccCCCCCC-CCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------
Q 021051          136 LALERIEKLKASGSDGSSMTERSPFMSVDPAAPA-SSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------  204 (318)
Q Consensus       136 ~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------  204 (318)
                      +++..+..  +..                +.... .....++.|..++.++++.+  +..++++|.++..          
T Consensus       231 ~~L~nl~~--~~~----------------~~~~~~~~~~~lp~L~~LL~~~~~~v--~~~a~~aL~~l~~~~~~~~~~v~  290 (529)
T 3tpo_A          231 WTLSNLCR--NKN----------------PAPPLDAVEQILPTLVRLLHHNDPEV--LADSCWAISYLTDGPNERIEMVV  290 (529)
T ss_dssp             HHHHHHHC--CCT----------------TCCCHHHHHHHHHHHHHHTTSSCHHH--HHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHh--ccc----------------chhhHHHHhhHHHHHHHHhcCCcHHH--HHHHHHHHHHhhhhhhhhHHHHH
Confidence            88888761  000                00000 01236788999998887765  9999999987642          


Q ss_pred             -hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----
Q 021051          205 -DEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD----  268 (318)
Q Consensus       205 -~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----  268 (318)
                       ...++.|.+++.++++.++..++.+|+.+..           ..+++.|..++.++  ++.+|..|+++|+++..    
T Consensus       291 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~--~~~i~~~a~~aL~nl~~~~~~  368 (529)
T 3tpo_A          291 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP--KTNIQKEATWTMSNITAGRQD  368 (529)
T ss_dssp             TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS--SHHHHHHHHHHHHHHHTSCHH
T ss_pred             hccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcccHH
Confidence             3567889999999999999999999998742           34678899999887  89999999999999842    


Q ss_pred             -------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcc
Q 021051          269 -------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYL  309 (318)
Q Consensus       269 -------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~  309 (318)
                             .+.++.|..++.+.+..++..|+++|.++..+.+.++..|+
T Consensus       369 ~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l  416 (529)
T 3tpo_A          369 QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYL  416 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence                   24688999999999999999999999999876655534443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.68  E-value=8.7e-16  Score=147.74  Aligned_cols=264  Identities=18%  Similarity=0.142  Sum_probs=209.0

Q ss_pred             hhHHHHHHhhcCC--CCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC---
Q 021051           16 EMEKFLCDRLVDP--TQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA---   79 (318)
Q Consensus        16 ~~~~~L~~~L~~~--~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---   79 (318)
                      ..++.++++|.++  +.  .+|..|++.|..+..           ..+++.|++++++.++.++..++++|+.+...   
T Consensus       377 ~Lv~~l~~lL~~~~~d~--~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~  454 (810)
T 3now_A          377 KLAEACRRFLIKPGKDK--DIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK  454 (810)
T ss_dssp             HHHHHHHHHHHCSSCCS--SHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred             HHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence            3466788889988  65  899999999988865           35789999999999999999999999987642   


Q ss_pred             ----------------------------------------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC--------
Q 021051           80 ----------------------------------------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL--------  111 (318)
Q Consensus        80 ----------------------------------------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~--------  111 (318)
                                                              .++|.|+.++.  ++++.+|..|+++|+++..        
T Consensus       455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~--s~s~~vqe~Aa~aL~NLA~d~~~r~~V  532 (810)
T 3now_A          455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAK--TESHNSQELIARVLNAVCGLKELRGKV  532 (810)
T ss_dssp             CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHT--CCCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                                    35899999999  8999999999999998852        


Q ss_pred             --CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcCh
Q 021051          112 --ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGM  189 (318)
Q Consensus       112 --~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~  189 (318)
                        ...++.|.. ++.+.++.++..|+++|.++...  ..+..  .     +    ....  ..++++.|+.+|.++. ..
T Consensus       533 v~~Gaip~Lv~-LL~s~~~~~k~~Aa~AL~nL~~~--~~p~~--~-----~----~~~~--~~~aIppLv~LL~~~~-~~  595 (810)
T 3now_A          533 VQEGGVKALLR-MALEGTEKGKRHATQALARIGIT--INPEV--S-----F----SGQR--SLDVIRPLLNLLQQDC-TA  595 (810)
T ss_dssp             HHTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHHHH--SCHHH--H-----T----TTHH--HHHTHHHHHHTTSTTS-CH
T ss_pred             HHCCCHHHHHH-HHccCCHHHHHHHHHHHHHHhcC--CChhh--h-----h----cchh--hhcHHHHHHHHhCCCC-cH
Confidence              457899999 55788899999999999998611  11000  0     0    0000  0136899999997543 33


Q ss_pred             HHHHHHHHHHHhCCCh-----------hHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHh
Q 021051          190 YERYAALFALRNHGGD-----------EAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLR  247 (318)
Q Consensus       190 ~~r~~a~~~L~~~~~~-----------~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~  247 (318)
                      ..+..|+.+|.++...           .+++.|.+++.+.++.++..|+.+++.+..           ...++.|+.++.
T Consensus       596 l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~  675 (810)
T 3now_A          596 LENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE  675 (810)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc
Confidence            3466899999988542           467889999989999999999999998652           467889999998


Q ss_pred             ccCCCHHHHHHHHHHHhccCC------------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          248 NVNEHPMVRHEAAEALGSIAD------------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       248 ~~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      ..  +..+|.+|+++|+.+..            .+.++.|.+++.+++..++..|.++|.++...+.
T Consensus       676 s~--d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~  740 (810)
T 3now_A          676 DE--DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE  740 (810)
T ss_dssp             CS--SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred             CC--CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH
Confidence            76  89999999999999852            3578899999999999999999999999987543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.66  E-value=2.2e-14  Score=120.60  Aligned_cols=199  Identities=22%  Similarity=0.293  Sum_probs=128.1

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC-------
Q 021051           51 RDALIRATKDSSNLLAHEAAFALGQMQD-----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE-------  112 (318)
Q Consensus        51 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~-------  112 (318)
                      ++.|++.|.++++.+|..|+++|+.+..           ...++.|.+++.  ++++.+|..++.+|+++...       
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            4445555554455555555555544422           135666667776  56677777777777666543       


Q ss_pred             ----CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcC
Q 021051          113 ----SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKG  188 (318)
Q Consensus       113 ----~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~  188 (318)
                          +.++.|.. +.+++++.+|..++++|+++..                                         .++.
T Consensus        82 ~~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~~l~~-----------------------------------------~~~~  119 (252)
T 4hxt_A           82 IVDAGGVEVLVK-LLTSTDSEVQKEAARALANIAS-----------------------------------------GPDE  119 (252)
T ss_dssp             HHHTTHHHHHHH-HTTCSSHHHHHHHHHHHHHHTT-----------------------------------------SCHH
T ss_pred             HHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHc-----------------------------------------CCHH
Confidence                45667777 5566777777777777776650                                         0000


Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHH
Q 021051          189 MYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRH  257 (318)
Q Consensus       189 ~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~  257 (318)
                      .  +...+       ....++.|.+++.++++.++..++.+|+.+..           ...++.|+.++.+.  ++.+|.
T Consensus       120 ~--~~~~~-------~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~  188 (252)
T 4hxt_A          120 A--IKAIV-------DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQK  188 (252)
T ss_dssp             H--HHHHH-------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHH
T ss_pred             H--HHHHH-------HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHH
Confidence            0  00000       01345666666666666666666666666542           23678888888765  788888


Q ss_pred             HHHHHHhccCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          258 EAAEALGSIAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       258 ~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      .|+.+|+.+..           .+.++.|.++++++++.+|..|.++|.++......+
T Consensus       189 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  246 (252)
T 4hxt_A          189 EAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE  246 (252)
T ss_dssp             HHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence            88888888753           246889999999999999999999999999887655

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=99.62  E-value=3.5e-16  Score=118.72  Aligned_cols=120  Identities=19%  Similarity=0.255  Sum_probs=104.9

Q ss_pred             ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCC
Q 021051          173 SSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEH  252 (318)
Q Consensus       173 ~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~  252 (318)
                      ...+.+...|.++++.+  |..|+.+|+++++.. ++.|.+.++|+++.+|..|+.+||.++++.+++.|...+.|+  +
T Consensus        12 ~~~~~l~~~L~~~~~~v--R~~A~~~L~~~~~~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~--~   86 (131)
T 1te4_A           12 SGLVPRGSHMADENKWV--RRDVSTALSRMGDEA-FEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDD--S   86 (131)
T ss_dssp             ---------CCSSCCCS--SSSCCSSTTSCSSTT-HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHC--C
T ss_pred             ccHHHHHHHhcCCCHHH--HHHHHHHHHHhCchH-HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC--C
Confidence            46788999999988886  999999999998875 699999999999999999999999999999999999999987  8


Q ss_pred             HHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051          253 PMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       253 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l  297 (318)
                      +.||..|+++|+.++++.+++.|.++++++++.||..|..+|++|
T Consensus        87 ~~VR~~A~~aL~~~~~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           87 GFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             THHHHHHHHHHHHHCSHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999875

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.61  E-value=3e-14  Score=140.62  Aligned_cols=112  Identities=19%  Similarity=0.137  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHhCCC-------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC----------cchHHHHHHHHhccCCCH
Q 021051          191 ERYAALFALRNHGG-------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN----------KAASAALSDVLRNVNEHP  253 (318)
Q Consensus       191 ~r~~a~~~L~~~~~-------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~~~~~~~  253 (318)
                      +|..|..+++.+..       +..++.+.+.+++++|.+|..|+.++|.+..          +..++.|...+.|+  ++
T Consensus       337 vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~--~~  414 (852)
T 4fdd_A          337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK--KA  414 (852)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS--SH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC--CH
Confidence            48888888877632       3456777778889999999999999999865          34678888888887  89


Q ss_pred             HHHHHHHHHHhccCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          254 MVRHEAAEALGSIAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       254 ~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      .||.++++++++++.           ...++.|.+.+.++++.||..|+++|..+-.....+
T Consensus       415 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~  476 (852)
T 4fdd_A          415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE  476 (852)
T ss_dssp             HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence            999999999998863           246778888888999999999999999987654433

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.61  E-value=2.3e-14  Score=133.68  Aligned_cols=261  Identities=16%  Similarity=0.106  Sum_probs=190.7

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD-------   78 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------   78 (318)
                      ..++.|..+|.+++. ...+..+...+..+..          ...++.|.+++.+.++.++..++++|+.+..       
T Consensus       185 ~~i~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  263 (529)
T 1jdh_A          185 GGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG  263 (529)
T ss_dssp             THHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSC
T ss_pred             CCHHHHHHHHHhCCh-HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHH
Confidence            467788888887774 4556566666655433          3678889999999999999999999987643       


Q ss_pred             -CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC-----------CcHHHHHhhhcc-CCCHHHHHHHHHHHHHHHhhh
Q 021051           79 -AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE-----------SNIPLLKNSLVS-DPAQEVRETCELALERIEKLK  145 (318)
Q Consensus        79 -~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~l~~-d~~~~vr~~a~~aL~~~~~~~  145 (318)
                       ...++.|.+++.  ++++.+|..|+.+|+++...           ..++.|.+.+.. +.++.++..++.+|+++. ..
T Consensus       264 ~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~-~~  340 (529)
T 1jdh_A          264 MEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SR  340 (529)
T ss_dssp             CHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SS
T ss_pred             HHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHH-cC
Confidence             246899999998  89999999999999998652           457888885543 345899999999999886 10


Q ss_pred             ccCcc-ccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHHHHHHH
Q 021051          146 ASGSD-GSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVSAIIDS  214 (318)
Q Consensus       146 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~  214 (318)
                      +.... ....              +.....++.|..++.+++.. .+|..++++++++..          ...++.|.+.
T Consensus       341 ~~~~~~~~~~--------------i~~~~~i~~L~~lL~~~~~~-~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~l  405 (529)
T 1jdh_A          341 HQEAEMAQNA--------------VRLHYGLPVVVKLLHPPSHW-PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL  405 (529)
T ss_dssp             STTHHHHHHH--------------HHHTTCHHHHHHTTSTTCCH-HHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHH
T ss_pred             CchHHHHHHH--------------HHHcCChhHHHHHhccccch-HHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHH
Confidence            00000 0000              00123689999999887642 359999999999863          3577888888


Q ss_pred             hCCCCHHHHHHHHHHHhc--------------------------------cCCcchHHHHHHHHhccCCCHHHHHHHHHH
Q 021051          215 LGATSALLKHEVAYVLGQ--------------------------------LQNKAASAALSDVLRNVNEHPMVRHEAAEA  262 (318)
Q Consensus       215 l~d~~~~vr~~a~~~L~~--------------------------------~~~~~~~~~L~~~l~~~~~~~~vr~~a~~a  262 (318)
                      +.+.++.+|.+++++++.                                +.+...++.|+.++.+.  ++.++..++.+
T Consensus       406 l~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~--~~~v~~~a~~~  483 (529)
T 1jdh_A          406 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGV  483 (529)
T ss_dssp             HHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCC--chHHHHHHHHH
Confidence            887777777766655543                                22345678999999987  89999999999


Q ss_pred             HhccCCh----------hhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051          263 LGSIADD----------QSIGLLKEFAKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       263 L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~aL~~l  297 (318)
                      |+++...          +.++.|.+++.++++.|+..|.++|.++
T Consensus       484 l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          484 LCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            9998632          5688899999999999999999999876

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.60  E-value=5.8e-14  Score=135.58  Aligned_cols=258  Identities=18%  Similarity=0.147  Sum_probs=196.6

Q ss_pred             hhhHHHHHHhhcCCCC------CHHHHHHHHHHHhcc--C--CCChHHHHHHhccCCCHHHHHHHHHHHhcc----CCCC
Q 021051           15 PEMEKFLCDRLVDPTQ------PISERFRALFSLRNL--K--GPGPRDALIRATKDSSNLLAHEAAFALGQM----QDAE   80 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~------~~~~r~~A~~~l~~~--~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~   80 (318)
                      .+..+.|.+.|.+++.      +..+|..|+..||..  |  .+++.+.|.+.+.+++..++..|+.+||-+    ++..
T Consensus       428 ~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~  507 (963)
T 4ady_A          428 RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE  507 (963)
T ss_dssp             HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH
Confidence            3567788888886650      027898999999884  3  356899999999888888899999999976    4556


Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHH--hcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCC
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALG--AIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERS  158 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~--~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~  158 (318)
                      ++..|+..+.. +.+..+|+.++.+||  .+|.++..+.+.+.+..+.+|.+|..++.+++---  ...           
T Consensus       508 ai~~LL~~~~e-~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAy--aGT-----------  573 (963)
T 4ady_A          508 AIHDMFTYSQE-TQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAY--AGT-----------  573 (963)
T ss_dssp             HHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTS-----------
T ss_pred             HHHHHHHHHhc-cCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cCC-----------
Confidence            77888887663 567889999999999  56788899999887888999999999998887322  000           


Q ss_pred             CCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHh--CCChhHHHHHHHHh-CCCCHHHHHHHHHHHhccC-
Q 021051          159 PFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRN--HGGDEAVSAIIDSL-GATSALLKHEVAYVLGQLQ-  234 (318)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~--~~~~~~~~~l~~~l-~d~~~~vr~~a~~~L~~~~-  234 (318)
                                 ++..++..|+..+.++..+ .+|..|+.+||.  +++++.++.+.+.+ .+.++.+|..++.+||.++ 
T Consensus       574 -----------Gn~~aIq~LL~~~~~d~~d-~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~a  641 (963)
T 4ady_A          574 -----------GNNSAVKRLLHVAVSDSND-DVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACA  641 (963)
T ss_dssp             -----------CCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred             -----------CCHHHHHHHHHHhccCCcH-HHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence                       1234677777776544333 369999999997  46777778887744 6789999999999999984 


Q ss_pred             ---CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC--h-----hhHHHH---HHhhcC--CCHHHHHHHHHHHHhchh
Q 021051          235 ---NKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD--D-----QSIGLL---KEFAKD--PEPIVSQSCEVALSMLEY  299 (318)
Q Consensus       235 ---~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--~-----~~~~~L---~~~l~~--~~~~vr~~a~~aL~~l~~  299 (318)
                         .+++++.|..+..|.  +..||..|+.+||.+|-  .     ...+++   .+...+  .++..+-.++.|++.+..
T Consensus       642 Gn~~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a  719 (963)
T 4ady_A          642 GKGLQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNA  719 (963)
T ss_dssp             SSCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence               346889888988887  89999999999999972  1     333333   334443  578899999999887744


Q ss_pred             h
Q 021051          300 E  300 (318)
Q Consensus       300 ~  300 (318)
                      +
T Consensus       720 G  720 (963)
T 4ady_A          720 G  720 (963)
T ss_dssp             G
T ss_pred             C
Confidence            3

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.59  E-value=2.8e-14  Score=137.33  Aligned_cols=261  Identities=18%  Similarity=0.089  Sum_probs=205.3

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-C------------------------------------------Ch
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-P------------------------------------------GP   50 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-~------------------------------------------~~   50 (318)
                      +...++.|+++|.++++  .+...|+++|+++.. .                                          .+
T Consensus       419 d~g~Ip~LV~LL~s~d~--~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGa  496 (810)
T 3now_A          419 DKASIHALMDLARGGNQ--SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGI  496 (810)
T ss_dssp             CHHHHHHHHHHHHTTCG--GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTH
T ss_pred             ccchHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcC
Confidence            46788999999998886  889999999988754 1                                          36


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHhccCC----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC---CC-----
Q 021051           51 RDALIRATKDSSNLLAHEAAFALGQMQD----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG---LE-----  112 (318)
Q Consensus        51 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~---~~-----  112 (318)
                      ++.|++++.++++.+|..|+|+|+.+..          ..+++.|+.++.  +.++.+|..|+.+|+++.   ++     
T Consensus       497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~--s~~~~~k~~Aa~AL~nL~~~~~p~~~~~  574 (810)
T 3now_A          497 TTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL--EGTEKGKRHATQALARIGITINPEVSFS  574 (810)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc--cCCHHHHHHHHHHHHHHhcCCChhhhhc
Confidence            8899999999999999999999998763          257999999999  778899999999998753   21     


Q ss_pred             -----CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCc
Q 021051          113 -----SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEK  187 (318)
Q Consensus       113 -----~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~  187 (318)
                           +.++.|..++..+.+...+..++++|.++..  .+ +.....              .....+++.|..++.+++.
T Consensus       575 ~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~--~~-d~~~~~--------------Ii~aG~l~~Lv~LL~s~~~  637 (810)
T 3now_A          575 GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS--MN-ESVRQR--------------IIKEQGVSKIEYYLMEDHL  637 (810)
T ss_dssp             THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT--SC-HHHHHH--------------HHHTTHHHHHHHHHHSCCT
T ss_pred             chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc--CC-HHHHHH--------------HHHcCCHHHHHHHHcCCCH
Confidence                 2578888855444466667789999998871  00 000000              0013478999999999888


Q ss_pred             ChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC------------cchHHHHHH
Q 021051          188 GMYERYAALFALRNHGG-----------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN------------KAASAALSD  244 (318)
Q Consensus       188 ~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~------------~~~~~~L~~  244 (318)
                      .+  |..|+.+++++..           .+.++.|..++..++..++..|+.+|+.+..            ...++.|+.
T Consensus       638 ~V--q~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~  715 (810)
T 3now_A          638 YL--TRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHT  715 (810)
T ss_dssp             TH--HHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHH
T ss_pred             HH--HHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHH
Confidence            75  9999999998742           3577888899999999999999999987642            467899999


Q ss_pred             HHhccCCCHHHHHHHHHHHhccC--C---------hhhHHHHHHhhcCC---CHHHHHHHHHHHHhchh
Q 021051          245 VLRNVNEHPMVRHEAAEALGSIA--D---------DQSIGLLKEFAKDP---EPIVSQSCEVALSMLEY  299 (318)
Q Consensus       245 ~l~~~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~~~---~~~vr~~a~~aL~~l~~  299 (318)
                      ++.+.  +..+|..|+++|.++.  +         .++++.|.+++++.   +..+...|..+|..+..
T Consensus       716 LL~s~--d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~  782 (810)
T 3now_A          716 LIANP--SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER  782 (810)
T ss_dssp             HHTCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHCCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence            99987  8999999999998874  2         24678888887654   78999999999997744

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=99.59  E-value=2.7e-16  Score=119.37  Aligned_cols=122  Identities=20%  Similarity=0.177  Sum_probs=103.3

Q ss_pred             CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcC
Q 021051           13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDF   92 (318)
Q Consensus        13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~   92 (318)
                      +.+...+.+...|.|+++  .+|..|++.|+.++++. ++.|.+.|+|+++.+|..|+++||.++...+++.|..++.  
T Consensus         9 ~~~~~~~~l~~~L~~~~~--~vR~~A~~~L~~~~~~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~--   83 (131)
T 1te4_A            9 HHSSGLVPRGSHMADENK--WVRRDVSTALSRMGDEA-FEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLE--   83 (131)
T ss_dssp             ------------CCSSCC--CSSSSCCSSTTSCSSTT-HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHH--
T ss_pred             cccccHHHHHHHhcCCCH--HHHHHHHHHHHHhCchH-HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHc--
Confidence            567788999999999987  89999999999999865 6999999999999999999999999999889999999999  


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHH
Q 021051           93 SLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALER  140 (318)
Q Consensus        93 ~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~  140 (318)
                      |+++.||..|+.+|+.++++..++.|.+ +.+|+++.||..++.+|++
T Consensus        84 d~~~~VR~~A~~aL~~~~~~~a~~~L~~-~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           84 DDSGFVRSGAARSLEQIGGERVRAAMEK-LAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HCCTHHHHHHHHHHHHHCSHHHHHHHHH-HTTSCCTHHHHHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHhCCCHHHHHHHHHHHHh
Confidence            8999999999999999999999999999 5689999999999999875

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.58  E-value=9.5e-14  Score=135.48  Aligned_cols=279  Identities=15%  Similarity=0.125  Sum_probs=201.3

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhcc-CCCHHHHHHHHHHHhccC-----
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATK-DSSNLLAHEAAFALGQMQ-----   77 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~-----   77 (318)
                      ...++.|+.+|.++++  .+|..|+.+|+.+..           +..++.|++.|. +.++.+|..|+.+|..+.     
T Consensus       149 ~g~ip~Lv~lL~~~d~--~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~  226 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQ--VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG  226 (780)
T ss_dssp             HHHHHHHHHHHHCSCH--HHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH
T ss_pred             hCCHHHHHHHHCCCCH--HHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence            4567888888987775  899999999988753           257888888886 458899999999987653     


Q ss_pred             -----CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051           78 -----DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALERI  141 (318)
Q Consensus        78 -----~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~  141 (318)
                           ....++.|++++.  ++++.+|..|+.+|.++.           ....++.|.+ ++.++++.++..+..+|..+
T Consensus       227 ~~~i~~~g~I~~Lv~lL~--~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~-lL~~~~~~v~~~a~~aL~~L  303 (780)
T 2z6g_A          227 LLAIFKSGGIPALVNMLG--SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQIL  303 (780)
T ss_dssp             HHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH-GGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHH-HHhcCCHHHHHHHHHHHHHH
Confidence                 2367899999999  788999999999998874           2457888888 55778889998888888766


Q ss_pred             Hhhhcc--------Ccc---ccccccCCCCccc-------------CCC--CCCCCCccHHHHHHHHcCCCcChHHHHHH
Q 021051          142 EKLKAS--------GSD---GSSMTERSPFMSV-------------DPA--APASSCSSVDMLREVLLGEEKGMYERYAA  195 (318)
Q Consensus       142 ~~~~~~--------~~~---~~~~l~~~~~~~~-------------~~~--~~~~~~~~~~~L~~~l~~~~~~~~~r~~a  195 (318)
                      . ..+.        .+.   +..++........             .+.  ..+.....++.|+.++.+.+..  ++..+
T Consensus       304 a-~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~--~~~~a  380 (780)
T 2z6g_A          304 A-YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR--LVQNC  380 (780)
T ss_dssp             H-TTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHH--HHHHH
T ss_pred             h-cCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchH--HHHHH
Confidence            5 1100        000   1111111100000             000  0000123567788888776554  47788


Q ss_pred             HHHHHhCC--------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHH
Q 021051          196 LFALRNHG--------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVR  256 (318)
Q Consensus       196 ~~~L~~~~--------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr  256 (318)
                      +.+|.++.        ....++.|.+++.+.++.++..|+.+|+.+..           ..+++.|++++.+..+...+|
T Consensus       381 ~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~  460 (780)
T 2z6g_A          381 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT  460 (780)
T ss_dssp             HHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHH
Confidence            88887763        35688999999999999999999999998764           347899999998743235899


Q ss_pred             HHHHHHHhccCC--------------hhhHHHHHHhhcCCC-HHHHHHHHHHHHhchhhh
Q 021051          257 HEAAEALGSIAD--------------DQSIGLLKEFAKDPE-PIVSQSCEVALSMLEYEQ  301 (318)
Q Consensus       257 ~~a~~aL~~~~~--------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~l~~~~  301 (318)
                      ..|+.+|+++..              ...++.|.+++.+++ +.++..|+++|+++....
T Consensus       461 ~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~  520 (780)
T 2z6g_A          461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP  520 (780)
T ss_dssp             HHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence            999999999863              135788999888765 599999999999997643

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.58  E-value=6e-14  Score=138.48  Aligned_cols=259  Identities=17%  Similarity=0.119  Sum_probs=191.0

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccC-------CCChHHHHHHhccCCCHHHHHHHHHHHhccCC-----------
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLK-------GPGPRDALIRATKDSSNLLAHEAAFALGQMQD-----------   78 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------   78 (318)
                      ....+.+.|.++++  .+|..+..+++.+.       .++.++.|.+.+.++++.+|..++.+|+.+..           
T Consensus        91 ik~~ll~~l~~~~~--~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~  168 (852)
T 4fdd_A           91 IKSECLNNIGDSSP--LIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVL  168 (852)
T ss_dssp             HHHHHHTTTTCSSH--HHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSS
T ss_pred             HHHHHHHHHcCCCH--HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhh
Confidence            34456667777765  89999999988762       36899999999999999999999999876431           


Q ss_pred             ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 021051           79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE----------SNIPLLKNSLVSDPAQEVRETCELALERIEKL  144 (318)
Q Consensus        79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~  144 (318)
                          ...++.|.+.+.  ++++.+|..|+.+|+.+-..          ..++.+.. +.+|+++.||..+..+|..+.. 
T Consensus       169 ~~~~~~il~~l~~~l~--~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~-~~~d~~~~vr~~a~~~L~~l~~-  244 (852)
T 4fdd_A          169 DRPLNIMIPKFLQFFK--HSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFA-LAGDEEPEVRKNVCRALVMLLE-  244 (852)
T ss_dssp             SSCHHHHHHHHTTTTT--CSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHH-
Confidence                123556666667  88999999999999876421          34566666 5689999999999999998871 


Q ss_pred             hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh------------hHHHHHH
Q 021051          145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD------------EAVSAII  212 (318)
Q Consensus       145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~------------~~~~~l~  212 (318)
                       .....+...+                +..++.+...+.++++.  +|..|+..+..++..            ..++.+.
T Consensus       245 -~~~~~~~~~l----------------~~l~~~l~~~~~~~~~~--vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll  305 (852)
T 4fdd_A          245 -VRMDRLLPHM----------------HNIVEYMLQRTQDQDEN--VALEACEFWLTLAEQPICKDVLVRHLPKLIPVLV  305 (852)
T ss_dssp             -HCHHHHGGGH----------------HHHHHHHHHHHTCSSHH--HHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHH
T ss_pred             -hCHHHHHHHH----------------HHHHHHHHHHccCCcHH--HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence             1100000000                12567777888777655  599999888877642            3456666


Q ss_pred             HHh-----------CC-----------CCHHHHHHHHHHHhccCC-------cchHHHHHHHHhccCCCHHHHHHHHHHH
Q 021051          213 DSL-----------GA-----------TSALLKHEVAYVLGQLQN-------KAASAALSDVLRNVNEHPMVRHEAAEAL  263 (318)
Q Consensus       213 ~~l-----------~d-----------~~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~~~~~~~~vr~~a~~aL  263 (318)
                      +.+           .|           .++.+|..+..+|+.+..       +..++.+.+.+.++  +|.+|.+|+.+|
T Consensus       306 ~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~--~~~~R~aa~~al  383 (852)
T 4fdd_A          306 NGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH--EWVVKESGILVL  383 (852)
T ss_dssp             HHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHH
T ss_pred             HHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHH
Confidence            655           33           345679888888887642       23566677777776  899999999999


Q ss_pred             hccCC----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          264 GSIAD----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       264 ~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      |.+..          +..++.+...++|+++.||..++++++++.....
T Consensus       384 g~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  432 (852)
T 4fdd_A          384 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV  432 (852)
T ss_dssp             HHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            99964          3578888899999999999999999999876543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.58  E-value=1.9e-13  Score=129.53  Aligned_cols=270  Identities=17%  Similarity=0.114  Sum_probs=139.9

Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHH----HHHhccCCCHHHHHHHHHHHhccCC--C------CcHHHHH
Q 021051           19 KFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDA----LIRATKDSSNLLAHEAAFALGQMQD--A------EAIPALE   86 (318)
Q Consensus        19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~----L~~~l~d~~~~vr~~a~~aL~~~~~--~------~~~~~L~   86 (318)
                      ..+.+.|.|+++  .+|..|+++++.++.++..+.    +.+.+.|+++.||..|+.+++++..  +      ..++.|.
T Consensus        89 n~l~kdL~~~n~--~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~  166 (591)
T 2vgl_B           89 NSFVKDCEDPNP--LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLR  166 (591)
T ss_dssp             HHHGGGSSSSSH--HHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHH
Confidence            344445566554  667777777766666554444    5556666677777777666665421  1      1345666


Q ss_pred             HhhhcCCCCHHHHHHHHHHHHhcCCCCc-----------HHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCc---c--
Q 021051           87 AVLNDFSLHPIVRHEAAEALGAIGLESN-----------IPLLKNSLVSDPAQEVRETCELALERIEKLKASGS---D--  150 (318)
Q Consensus        87 ~~l~~~~~~~~vR~~a~~~L~~~~~~~~-----------~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~---~--  150 (318)
                      +++.  |+++.|+..|+.+|+.+.....           +..|.+ ...+.++..+...+..++.+..  ....   .  
T Consensus       167 ~lL~--d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~-~l~~~~~~~q~~il~~l~~l~~--~~~~~~~~~l  241 (591)
T 2vgl_B          167 DLIA--DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLT-ALNECTEWGQIFILDCLSNYNP--KDDREAQSIC  241 (591)
T ss_dssp             HTTS--CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHTSCC--CSHHHHHHHH
T ss_pred             HHhC--CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHH-cCCCCCchHHHHHHHHHHHhCC--CChHHHHHHH
Confidence            6666  6666777777777666653221           333444 2235556666555555554430  0000   0  


Q ss_pred             --ccccccCCCCcccC--------CCCCC-CCCccH--------HHHHHHHcCCCcChHHHHHHHHHHHhCCC--hhHHH
Q 021051          151 --GSSMTERSPFMSVD--------PAAPA-SSCSSV--------DMLREVLLGEEKGMYERYAALFALRNHGG--DEAVS  209 (318)
Q Consensus       151 --~~~~l~~~~~~~~~--------~~~~~-~~~~~~--------~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--~~~~~  209 (318)
                        +...+.........        -.... .+++.+        +.|+.+ .++++.  +|+.++.+++.+..  ++.+.
T Consensus       242 ~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L-~~~d~~--vr~~aL~~l~~i~~~~p~~~~  318 (591)
T 2vgl_B          242 ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL-LSGEPE--VQYVALRNINLIVQKRPEILK  318 (591)
T ss_dssp             HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHH-TTSCHH--HHHHHHHHHHHHHHHCCSTTT
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH-hcCCcc--HHHHHHHHHHHHHHhChHHHH
Confidence              11111111000000        00000 011222        223332 233333  36666666665521  11111


Q ss_pred             H-HHH--HhCCCCHHHHHHHHHHHhccCCcch----HHHHHHHHhccCCCHHHHHHHHHHHhccCC------hhhHHHHH
Q 021051          210 A-IID--SLGATSALLKHEVAYVLGQLQNKAA----SAALSDVLRNVNEHPMVRHEAAEALGSIAD------DQSIGLLK  276 (318)
Q Consensus       210 ~-l~~--~l~d~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~------~~~~~~L~  276 (318)
                      . +..  ++.+.++.+|..++..|..+.++..    ++.|..++.+.  ++.+|..++++++.++.      ...++.|.
T Consensus       319 ~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~--d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll  396 (591)
T 2vgl_B          319 QEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV--DVDFVRKAVRAIGRCAIKVEQSAERCVSTLL  396 (591)
T ss_dssp             TCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence            0 000  1113347777788888777776543    34444555554  78888888888887753      34677777


Q ss_pred             HhhcCCCHHHHHHHHHHHHhchhh
Q 021051          277 EFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       277 ~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      +++.+....++..++.++..+-..
T Consensus       397 ~ll~~~~~~v~~e~i~~l~~ii~~  420 (591)
T 2vgl_B          397 DLIQTKVNYVVQEAIVVIRDIFRK  420 (591)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcccchHHHHHHHHHHHHHHHH
Confidence            777777777887777777776443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.57  E-value=6.8e-13  Score=123.66  Aligned_cols=265  Identities=14%  Similarity=0.131  Sum_probs=204.4

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------   78 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------   78 (318)
                      ...++.|++.|.+.+ ++.+|..|+..|..+..          ...++.|.++++++++.++..++++|+.+..      
T Consensus        58 ~~~i~~Lv~~L~~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  136 (529)
T 1jdh_A           58 PQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             cchHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence            467888999997553 35899999999988754          3689999999999999999999999987631      


Q ss_pred             -----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           79 -----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        79 -----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                           ...++.|++++.  ++++.+|..++.+|..+.           ..+.++.|...+....+..++..+..+|..+.
T Consensus       137 ~~i~~~g~i~~L~~ll~--~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  214 (529)
T 1jdh_A          137 MAVRLAGGLQKMVALLN--KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  214 (529)
T ss_dssp             HHHHHHTHHHHHHHGGG--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence                 367899999999  789999999888887653           23567888885655556667777778887776


Q ss_pred             hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--------hhHHHHHHHH
Q 021051          143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--------DEAVSAIIDS  214 (318)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~  214 (318)
                      .   .... ...              +.....++.|..++.+++..  ++..++++|.++..        ...++.|.++
T Consensus       215 ~---~~~~-~~~--------------~~~~g~~~~L~~ll~~~~~~--~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~l  274 (529)
T 1jdh_A          215 V---CSSN-KPA--------------IVEAGGMQALGLHLTDPSQR--LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL  274 (529)
T ss_dssp             T---STTH-HHH--------------HHHTTHHHHHHTTTTSSCHH--HHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHH
T ss_pred             c---Cccc-HHH--------------HHHCCCHHHHHHHHhCCChH--HHHHHHHHHHHHhcCChhhHHHHhHHHHHHHH
Confidence            1   0000 000              00124688999999887655  48889999988732        4688999999


Q ss_pred             hCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh--------------
Q 021051          215 LGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD--------------  269 (318)
Q Consensus       215 l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~--------------  269 (318)
                      +.+.++.++..++.+|+.+..           ..+++.|++++.+.++++.++..|+.+|+++...              
T Consensus       275 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~  354 (529)
T 1jdh_A          275 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH  354 (529)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT
T ss_pred             HcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHc
Confidence            999999999999999999865           2468999999987544689999999999988531              


Q ss_pred             hhHHHHHHhhcCCC-HHHHHHHHHHHHhchhhhc
Q 021051          270 QSIGLLKEFAKDPE-PIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       270 ~~~~~L~~~l~~~~-~~vr~~a~~aL~~l~~~~~  302 (318)
                      +.++.|.+++.++. +.++..++++|.++..+..
T Consensus       355 ~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~  388 (529)
T 1jdh_A          355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA  388 (529)
T ss_dssp             TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred             CChhHHHHHhccccchHHHHHHHHHHHHHhcChh
Confidence            46888999998865 6999999999999886543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.56  E-value=5.9e-13  Score=111.75  Aligned_cols=194  Identities=22%  Similarity=0.276  Sum_probs=149.4

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC-----------ChHHHHHHhccCCCHHHHHHHHHHHhccCCC------
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGP-----------GPRDALIRATKDSSNLLAHEAAFALGQMQDA------   79 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------   79 (318)
                      .++.|.+.|.++++  .+|..|++.|+.+...           ..++.|.+++.++++.+|..++++|+.+...      
T Consensus         3 ~i~~L~~~L~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            3 DVEKLVKLLTSTDS--ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             HHHHHHHHTTCSCH--HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            47889999999886  9999999999888542           5799999999999999999999999998864      


Q ss_pred             -----CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC-----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 021051           80 -----EAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE-----------SNIPLLKNSLVSDPAQEVRETCELALERIEK  143 (318)
Q Consensus        80 -----~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~  143 (318)
                           ..++.|..++.  ++++.+|..|+.+|+++...           +.++.|.+ +..++++.++..++.+|+++..
T Consensus        81 ~~~~~~~i~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK-LLTSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHc
Confidence                 57999999999  88999999999999998732           46777888 5677888888888888887760


Q ss_pred             hhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHH
Q 021051          144 LKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLK  223 (318)
Q Consensus       144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr  223 (318)
                                                               .++.   +.   ..+.   ....++.|.+++.++++.++
T Consensus       158 -----------------------------------------~~~~---~~---~~~~---~~~~i~~L~~ll~~~~~~v~  187 (252)
T 4hxt_A          158 -----------------------------------------GPDE---AI---KAIV---DAGGVEVLVKLLTSTDSEVQ  187 (252)
T ss_dssp             -----------------------------------------SCHH---HH---HHHH---HTTHHHHHHHHTTCSCHHHH
T ss_pred             -----------------------------------------CCHH---HH---HHHH---HCcCHHHHHHHHCCCCHHHH
Confidence                                                     0000   00   0000   12355666666666666666


Q ss_pred             HHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          224 HEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       224 ~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                      ..++.+|+.+..           ...++.|++++.+.  ++.+|..|+++|+++.
T Consensus       188 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~  240 (252)
T 4hxt_A          188 KEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST--DSEVQKEAQRALENIK  240 (252)
T ss_dssp             HHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC--cHHHHHHHHHHHHHHH
Confidence            666666666542           34678999999876  8999999999999875

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.55  E-value=1.9e-13  Score=129.49  Aligned_cols=258  Identities=13%  Similarity=0.133  Sum_probs=183.2

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhc---cCC--CChHHHHHHhccCCCHHHHHHHHHHHhccCCC------CcHH
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRN---LKG--PGPRDALIRATKDSSNLLAHEAAFALGQMQDA------EAIP   83 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~---~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~   83 (318)
                      ...+..+.+.|.+++.  ..|..++.-+-.   .|.  +.....+++++.+++..+|..+..++..+...      ..+.
T Consensus        12 ~~e~~~i~~~L~~~~~--~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n   89 (591)
T 2vgl_B           12 KGEIFELKAELNNEKK--EKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVN   89 (591)
T ss_dssp             SSHHHHHHHHTTSSCH--HHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHH
T ss_pred             CChHHHHHHHHcCCCH--HHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHH
Confidence            3467889999998875  666665554421   232  35677788888999999998777777665431      2345


Q ss_pred             HHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHH----HHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCC
Q 021051           84 ALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPL----LKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSP  159 (318)
Q Consensus        84 ~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~----L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~  159 (318)
                      .|.+-+.  ++++.+|..|+++|++++.++..+.    +.+ +..|+++.||+.|+.++.++..  ...+.    +    
T Consensus        90 ~l~kdL~--~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~-~L~d~~~~VRk~A~~al~~i~~--~~p~~----~----  156 (591)
T 2vgl_B           90 SFVKDCE--DPNPLIRALAVRTMGCIRVDKITEYLCEPLRK-CLKDEDPYVRKTAAVCVAKLHD--INAQM----V----  156 (591)
T ss_dssp             HHGGGSS--SSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHH-HSSCSCHHHHHHHHHHHHHHHH--SSCCC----H----
T ss_pred             HHHHHcC--CCCHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HcCCCChHHHHHHHHHHHHHHh--hChhh----c----
Confidence            5566666  8999999999999999998776555    777 5679999999999999998861  11100    0    


Q ss_pred             CcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----------hHHHHHHHHhCCCCHHHHHHHHH
Q 021051          160 FMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----------EAVSAIIDSLGATSALLKHEVAY  228 (318)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----------~~~~~l~~~l~d~~~~vr~~a~~  228 (318)
                       .         ....++.|..++.|+++.  |+..|+.+|+.++..           ..+..|.+.+.+.++..+..++.
T Consensus       157 -~---------~~~~~~~l~~lL~d~d~~--V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~  224 (591)
T 2vgl_B          157 -E---------DQGFLDSLRDLIADSNPM--VVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILD  224 (591)
T ss_dssp             -H---------HHHHHHHHHHTTSCSCHH--HHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             -c---------cccHHHHHHHHhCCCChh--HHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHH
Confidence             0         012467888888777665  599999999888643           23667777777888888999999


Q ss_pred             HHhccCCc------chHHHHHHHHhccCCCHHHHHHHHHHHhccCC-----hhhH--------HHHHHhhcCCCHHHHHH
Q 021051          229 VLGQLQNK------AASAALSDVLRNVNEHPMVRHEAAEALGSIAD-----DQSI--------GLLKEFAKDPEPIVSQS  289 (318)
Q Consensus       229 ~L~~~~~~------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----~~~~--------~~L~~~l~~~~~~vr~~  289 (318)
                      +++.+...      ..++.+...+++.  ++.|+.+|++++..+..     ++.+        +.|..++ ++++.+|..
T Consensus       225 ~l~~l~~~~~~~~~~~l~~l~~~l~~~--~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~  301 (591)
T 2vgl_B          225 CLSNYNPKDDREAQSICERVTPRLSHA--NSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYV  301 (591)
T ss_dssp             HHHTSCCCSHHHHHHHHHHHTTCSCSS--TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHH
Confidence            99988753      3455566666665  78999999999988752     2322        3344443 478899999


Q ss_pred             HHHHHHhchhhhc
Q 021051          290 CEVALSMLEYEQL  302 (318)
Q Consensus       290 a~~aL~~l~~~~~  302 (318)
                      ++.+|..+.....
T Consensus       302 aL~~l~~i~~~~p  314 (591)
T 2vgl_B          302 ALRNINLIVQKRP  314 (591)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhCh
Confidence            9999998876533

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.55  E-value=2.3e-13  Score=114.64  Aligned_cols=217  Identities=22%  Similarity=0.255  Sum_probs=119.1

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCC
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLH   95 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~   95 (318)
                      ...+.+.+.|.++++  .+|..|++.|..+-..             +...+..       +.....++.|++++.  +++
T Consensus        12 ~~~~~~~~~L~s~~~--~~~~~a~~~L~~~l~~-------------~~~~~~~-------~~~~g~i~~L~~lL~--~~~   67 (252)
T 4db8_A           12 SELPQMTQQLNSDDM--QEQLSATRKFSQILSD-------------GNEQIQA-------VIDAGALPALVQLLS--SPN   67 (252)
T ss_dssp             CSHHHHHHHHHSSCS--SHHHHHHHHHHHHHHH-------------HHHHHHH-------HHHTTHHHHHHHGGG--CSC
T ss_pred             chHHHHHHHHcCCCH--HHHHHHHHHHHHHHcC-------------CCchHHH-------HHHcCcHHHHHHHHc--CCC
Confidence            346677777777776  6777777776442110             0000000       001244555555555  445


Q ss_pred             HHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccC
Q 021051           96 PIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVD  164 (318)
Q Consensus        96 ~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~  164 (318)
                      +.+|..|+.+|+++..           .+.++.|.. +++++++.+|..++++|+++..   ........          
T Consensus        68 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~---~~~~~~~~----------  133 (252)
T 4db8_A           68 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIAS---GGNEQIQA----------  133 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHTT---SCHHHHHH----------
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHhhc---CCchHHHH----------
Confidence            5555555555555543           246777777 5567778888888888887760   00000000          


Q ss_pred             CCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHH
Q 021051          165 PAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSD  244 (318)
Q Consensus       165 ~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~  244 (318)
                          +.....++.|+.++.++++.  +|..++.+|+++....             +..+...       .+..+++.|+.
T Consensus       134 ----~~~~~~i~~L~~lL~~~~~~--v~~~a~~~L~~l~~~~-------------~~~~~~~-------~~~~~i~~L~~  187 (252)
T 4db8_A          134 ----VIDAGALPALVQLLSSPNEQ--ILQEALWALSNIASGG-------------NEQIQAV-------IDAGALPALVQ  187 (252)
T ss_dssp             ----HHHTTHHHHHHHGGGCSCHH--HHHHHHHHHHHHTTSC-------------HHHHHHH-------HHTTCHHHHHH
T ss_pred             ----HHHCCCHHHHHHHHhCCCHH--HHHHHHHHHHHHHcCC-------------hHHHHHH-------HHCCCHHHHHH
Confidence                00012344444444444332  2444444444443210             0000000       01345677777


Q ss_pred             HHhccCCCHHHHHHHHHHHhccC--C---------hhhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051          245 VLRNVNEHPMVRHEAAEALGSIA--D---------DQSIGLLKEFAKDPEPIVSQSCEVALSMLE  298 (318)
Q Consensus       245 ~l~~~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~  298 (318)
                      ++.+.  ++.+|..|+.+|+++.  +         .++++.|.+++.++++.+|..|.++|.++.
T Consensus       188 ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          188 LLSSP--NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             GGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             HHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            77765  6777777777777774  2         246788888888888999999999998875

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.55  E-value=1.3e-12  Score=125.13  Aligned_cols=265  Identities=14%  Similarity=0.133  Sum_probs=205.5

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccC-------
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQ-------   77 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------   77 (318)
                      ...++.|++.|.+.+ +..+|..|+..|..+..          ...++.|++++.++++.+|..|+++|+.+.       
T Consensus        55 ~~~i~~Lv~~L~~~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~  133 (644)
T 2z6h_A           55 PQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK  133 (644)
T ss_dssp             HHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             cChHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence            467888999998653 24899999999887653          468999999999999999999999998764       


Q ss_pred             ----CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           78 ----DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        78 ----~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                          ....++.|+.++.  ++++.++..++.+|..+..           .+.++.|..++.......++..+..+|.++.
T Consensus       134 ~~v~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs  211 (644)
T 2z6h_A          134 MAVRLAGGLQKMVALLN--KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  211 (644)
T ss_dssp             HHHHHTTHHHHHHHGGG--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCChHHHHHHHC--cCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence                2467999999999  7788999888777776542           3568888886655556788888888888876


Q ss_pred             hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--------hhHHHHHHHH
Q 021051          143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--------DEAVSAIIDS  214 (318)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~  214 (318)
                      .   .... ...              +....+++.|..++.+++..  ++..++.+|.++..        ...++.|.++
T Consensus       212 ~---~~~~-~~~--------------l~~~g~l~~L~~ll~~~~~~--~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~l  271 (644)
T 2z6h_A          212 V---CSSN-KPA--------------IVEAGGMQALGLHLTDPSQR--LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL  271 (644)
T ss_dssp             T---CTTH-HHH--------------HHHTTHHHHHHTTTTCSCHH--HHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHH
T ss_pred             c---Cccc-HHH--------------HHHCCCHHHHHHHHhcCCHH--HHHHHHHHHHHHhhcchhhhhhhhHHHHHHHH
Confidence            1   0000 000              00123688999999887655  59999999988743        4688999999


Q ss_pred             hCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC--------------h
Q 021051          215 LGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD--------------D  269 (318)
Q Consensus       215 l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--------------~  269 (318)
                      +.+.++.++..++.+|+.+..           ..+++.|+.++.+.++.+.++..|+.+|+++..              .
T Consensus       272 L~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~  351 (644)
T 2z6h_A          272 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH  351 (644)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT
T ss_pred             HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHc
Confidence            999999999999999988754           236899999998753348999999999999853              1


Q ss_pred             hhHHHHHHhhcCCC-HHHHHHHHHHHHhchhhhc
Q 021051          270 QSIGLLKEFAKDPE-PIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       270 ~~~~~L~~~l~~~~-~~vr~~a~~aL~~l~~~~~  302 (318)
                      ..++.|.+++.++. +.++..|+++|+++.....
T Consensus       352 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~  385 (644)
T 2z6h_A          352 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA  385 (644)
T ss_dssp             THHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred             cChHHHHHHhCccCchHHHHHHHHHHHHHccCHH
Confidence            46888999988764 7999999999999876543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.54  E-value=7.1e-14  Score=136.35  Aligned_cols=268  Identities=15%  Similarity=0.086  Sum_probs=196.1

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccC-------
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQ-------   77 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------   77 (318)
                      ...++.|.++|.+.+. ...+..++.++..+..          ..+++.|..++.+.++.++..++++|..+.       
T Consensus       317 ~~~i~~Lv~lL~~~~~-~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~  395 (780)
T 2z6g_A          317 SGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE  395 (780)
T ss_dssp             TTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS
T ss_pred             cCCHHHHHHHHhcCCH-HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh
Confidence            3567888899998875 3344445555544322          356788888999999999999999998764       


Q ss_pred             -CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCC-HHHHHHHHHHHHHHHhh
Q 021051           78 -DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPA-QEVRETCELALERIEKL  144 (318)
Q Consensus        78 -~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~-~~vr~~a~~aL~~~~~~  144 (318)
                       ....++.|+.++.  ++++.+|..|+.+|+++..           ...++.|.+.+....+ +.++..++.+|+++. .
T Consensus       396 ~~~~~i~~Lv~lL~--~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~-~  472 (780)
T 2z6g_A          396 GMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-S  472 (780)
T ss_dssp             CCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-S
T ss_pred             hhhhHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH-h
Confidence             2346899999999  8999999999999998864           3467888885544333 589999999999886 1


Q ss_pred             hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHHHHHHH
Q 021051          145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVSAIIDS  214 (318)
Q Consensus       145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~  214 (318)
                      .+.....   .       .   ..+.....++.|.++|.+++.. .+|..++.+|+++..          ...++.|+++
T Consensus       473 ~~~~~~~---~-------~---~~v~~~~~l~~L~~lL~~~~~~-~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~l  538 (780)
T 2z6g_A          473 RHQDAEM---A-------Q---NAVRLHYGLPVVVKLLHPPSHW-PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL  538 (780)
T ss_dssp             SSTTHHH---H-------H---HHHHHTTCHHHHHHTTSTTCCH-HHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHH
T ss_pred             cCchHHH---H-------H---HHHHHcCCHHHHHHHhcCCChH-HHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHH
Confidence            1000000   0       0   0000123689999999877652 359999999998853          3567778777


Q ss_pred             hCCCC----------------------HHHHHHHHHHHhccC----------CcchHHHHHHHHhccCCCHHHHHHHHHH
Q 021051          215 LGATS----------------------ALLKHEVAYVLGQLQ----------NKAASAALSDVLRNVNEHPMVRHEAAEA  262 (318)
Q Consensus       215 l~d~~----------------------~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~~~~~~~~vr~~a~~a  262 (318)
                      +.+.+                      ..++..++.+|+.+.          ...+++.|++++.+.  ++.++..++.+
T Consensus       539 L~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~a  616 (780)
T 2z6g_A          539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGV  616 (780)
T ss_dssp             HHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS--CHHHHHHHHHH
T ss_pred             HHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC--CHHHHHHHHHH
Confidence            75433                      345666777777743          356789999999987  89999999999


Q ss_pred             HhccCC----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          263 LGSIAD----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       263 L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      |+.+..          .++++.|.+++.++++.||..|.++|.++.....
T Consensus       617 L~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          617 LCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             HHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence            988642          3468889999999999999999999999987554

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.52  E-value=3e-13  Score=129.47  Aligned_cols=263  Identities=16%  Similarity=0.097  Sum_probs=204.6

Q ss_pred             CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC-----------ChHHHHHHhccC-CCHHHHHHHHHHHhccC---
Q 021051           13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGP-----------GPRDALIRATKD-SSNLLAHEAAFALGQMQ---   77 (318)
Q Consensus        13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~-----------~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~---   77 (318)
                      +....++.|.++|.++++  .+|..|+..|+.+...           ..++.|++.|.+ .++.+|..|+.+|..+.   
T Consensus        11 ~~~g~i~~Lv~lL~~~~~--~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~   88 (644)
T 2z6h_A           11 LATRAIPELTKLLNDEDQ--VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   88 (644)
T ss_dssp             -CTTTHHHHHHHHTCSCH--HHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred             hhhchHHHHHHHHcCCCH--HHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence            556689999999998876  9999999999887541           357888888865 48999999999998755   


Q ss_pred             -------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051           78 -------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALE  139 (318)
Q Consensus        78 -------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~  139 (318)
                             ....++.|++++.  ++++.+|..|+.+|.++.           ....++.|.+ ++.++++.++..++.+|.
T Consensus        89 ~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~  165 (644)
T 2z6h_A           89 EGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQ  165 (644)
T ss_dssp             HHHHHHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH-GGGCCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHcCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHH-HHCcCCHHHHHHHHHHHH
Confidence                   3368999999999  789999999999998874           2467899999 667888999999988998


Q ss_pred             HHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHH
Q 021051          140 RIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVS  209 (318)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~  209 (318)
                      .+. .  ........              +.....++.|+.++.+.+.. .++..++.+|.++..          ..+++
T Consensus       166 ~La-~--~~~~~~~~--------------i~~~g~v~~Lv~lL~~~~~~-~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~  227 (644)
T 2z6h_A          166 ILA-Y--GNQESKLI--------------ILASGGPQALVNIMRTYTYE-KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ  227 (644)
T ss_dssp             HHH-T--TCHHHHHH--------------HHHTTHHHHHHHHHTTCCCH-HHHHHHHHHHHHHTTCTTHHHHHHHTTHHH
T ss_pred             HHH-h--cCcHHHHH--------------HHHcCChHHHHHHHHcCChH-HHHHHHHHHHHHHhcCcccHHHHHHCCCHH
Confidence            876 1  00000000              00124688999999877543 357778888777643          24678


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHhccCC--------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh-----------h
Q 021051          210 AIIDSLGATSALLKHEVAYVLGQLQN--------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD-----------Q  270 (318)
Q Consensus       210 ~l~~~l~d~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-----------~  270 (318)
                      .|.+++.+.+..++..++.+|+.+..        ...++.|+.++.+.  ++.+|..|+++|+.+...           +
T Consensus       228 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~--d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g  305 (644)
T 2z6h_A          228 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQVG  305 (644)
T ss_dssp             HHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            88888999999999999999988753        35789999999976  899999999999998532           3


Q ss_pred             hHHHHHHhhcC-C-CHHHHHHHHHHHHhchhh
Q 021051          271 SIGLLKEFAKD-P-EPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       271 ~~~~L~~~l~~-~-~~~vr~~a~~aL~~l~~~  300 (318)
                      .++.|..++.+ + .+.++..|+.+|.++...
T Consensus       306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~  337 (644)
T 2z6h_A          306 GIEALVRTVLRAGDREDITEPAICALRHLTSR  337 (644)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC
Confidence            68888888765 3 379999999999999753

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.52  E-value=6.1e-13  Score=126.56  Aligned_cols=122  Identities=20%  Similarity=0.120  Sum_probs=89.4

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCCh----HHHHHHhccCCCHHHHHHHHHHHhccC--CC----CcHHHHH
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGP----RDALIRATKDSSNLLAHEAAFALGQMQ--DA----EAIPALE   86 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~----~~~~~L~   86 (318)
                      .+..|.+-|.|+++  .+|..|+++++.++.++.    .+.+.+++.|+++.||..|+.+++++.  .+    ..++.+.
T Consensus       108 ~in~l~kDL~~~n~--~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~  185 (618)
T 1w63_A          108 MTNCIKNDLNHSTQ--FVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATK  185 (618)
T ss_dssp             HHHHHHHHHSCSSS--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTT
T ss_pred             HHHHHHHhcCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence            45567777888887  899999999999887655    666777778889999999999887764  12    3456666


Q ss_pred             HhhhcCCCCHHHHHHHHHHHHhcCCCC---------cHHHHHhhhcc--------------CCCHHHHHHHHHHHHHHH
Q 021051           87 AVLNDFSLHPIVRHEAAEALGAIGLES---------NIPLLKNSLVS--------------DPAQEVRETCELALERIE  142 (318)
Q Consensus        87 ~~l~~~~~~~~vR~~a~~~L~~~~~~~---------~~~~L~~~l~~--------------d~~~~vr~~a~~aL~~~~  142 (318)
                      +++.  |+|+.|+..|+.+|+.+...+         .++.|.+.+.+              .++|..+..++..|+.++
T Consensus       186 ~lL~--D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~  262 (618)
T 1w63_A          186 NLLN--EKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILG  262 (618)
T ss_dssp             TSTT--CCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHT
T ss_pred             HHhC--CCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhC
Confidence            7777  888999999999888877432         24445442221              357888888888888776

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.50  E-value=1e-12  Score=110.66  Aligned_cols=176  Identities=25%  Similarity=0.332  Sum_probs=119.8

Q ss_pred             CChHHHHHHhccCCCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----
Q 021051           48 PGPRDALIRATKDSSNLLAHEAAFALGQMQD-----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----  111 (318)
Q Consensus        48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----  111 (318)
                      ...++.|+++|.++++.+|..|+++|+.+..           ...++.|..++.  ++++.+|..|+.+|+++..     
T Consensus        53 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~  130 (252)
T 4db8_A           53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQ  130 (252)
T ss_dssp             TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCCchH
Confidence            3689999999999999999999999999875           247999999999  7899999999999998864     


Q ss_pred             ------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCC
Q 021051          112 ------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGE  185 (318)
Q Consensus       112 ------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  185 (318)
                            .+.++.|.+ +..++++.+|..++++|+++..   ..+.....+              .....++.|+.++.++
T Consensus       131 ~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~--------------~~~~~i~~L~~ll~~~  192 (252)
T 4db8_A          131 IQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIAS---GGNEQIQAV--------------IDAGALPALVQLLSSP  192 (252)
T ss_dssp             HHHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHTT---SCHHHHHHH--------------HHTTCHHHHHHGGGCS
T ss_pred             HHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHHc---CChHHHHHH--------------HHCCCHHHHHHHHCCC
Confidence                  246788999 6688899999999999999871   000000000              0012344555555444


Q ss_pred             CcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051          186 EKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGS  265 (318)
Q Consensus       186 ~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~  265 (318)
                      ++.  +|..|+.+|+++...             ++..+...       ....+++.|+.++.+.  ++.+|..|+++|++
T Consensus       193 ~~~--v~~~a~~~L~~l~~~-------------~~~~~~~~-------~~~g~i~~L~~ll~~~--~~~v~~~A~~~L~~  248 (252)
T 4db8_A          193 NEQ--ILQEALWALSNIASG-------------GNEQKQAV-------KEAGALEKLEQLQSHE--NEKIQKEAQEALEK  248 (252)
T ss_dssp             SHH--HHHHHHHHHHHHTTS-------------CHHHHHHH-------HHTTHHHHHHTTTTCS--SSHHHHTHHHHHHT
T ss_pred             CHH--HHHHHHHHHHHHhcC-------------CHHHHHHH-------HHCCcHHHHHHHhCCC--CHHHHHHHHHHHHH
Confidence            332  244444444444210             11111100       0134678888888876  78999999999988


Q ss_pred             cC
Q 021051          266 IA  267 (318)
Q Consensus       266 ~~  267 (318)
                      +.
T Consensus       249 l~  250 (252)
T 4db8_A          249 LQ  250 (252)
T ss_dssp             TC
T ss_pred             Hh
Confidence            74

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.48  E-value=4.6e-15  Score=123.59  Aligned_cols=186  Identities=22%  Similarity=0.204  Sum_probs=140.1

Q ss_pred             HhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHH
Q 021051           23 DRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEA  102 (318)
Q Consensus        23 ~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a  102 (318)
                      .++.|+++  .+|..++..+.       ...+..+++|+++.||..++..|.       .+.|..++.  |+++.||..+
T Consensus        57 ~ll~d~~~--~VR~~AA~~l~-------~~~l~~L~~D~~~~VR~~aA~~L~-------~~~L~~ll~--D~d~~VR~~a  118 (244)
T 1lrv_A           57 QYLADPFW--ERRAIAVRYSP-------VEALTPLIRDSDEVVRRAVAYRLP-------REQLSALMF--DEDREVRITV  118 (244)
T ss_dssp             GGTTCSSH--HHHHHHHTTSC-------GGGGGGGTTCSSHHHHHHHHTTSC-------SGGGGGTTT--CSCHHHHHHH
T ss_pred             HHhcCCCH--HHHHHHHHhCC-------HHHHHHHccCcCHHHHHHHHHHCC-------HHHHHHHHc--CCCHHHHHHH
Confidence            55677776  99999999652       345777789999999999998653       256777888  9999999999


Q ss_pred             HHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHH
Q 021051          103 AEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVL  182 (318)
Q Consensus       103 ~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l  182 (318)
                      +..+   .    .+.|.. +.+|+++.||..++..   +.                                .+.+..++
T Consensus       119 A~~l---~----~~~L~~-L~~D~d~~VR~~aA~~---l~--------------------------------~~~l~~l~  155 (244)
T 1lrv_A          119 ADRL---P----LEQLEQ-MAADRDYLVRAYVVQR---IP--------------------------------PGRLFRFM  155 (244)
T ss_dssp             HHHS---C----TGGGGG-GTTCSSHHHHHHHHHH---SC--------------------------------GGGGGGTT
T ss_pred             HHhC---C----HHHHHH-HHcCCCHHHHHHHHHh---cC--------------------------------HHHHHHHH
Confidence            9864   2    234555 7799999999998873   22                                12234455


Q ss_pred             cCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHH
Q 021051          183 LGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEA  262 (318)
Q Consensus       183 ~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~a  262 (318)
                      .|+++.  ||..++..+   +.    +.+..+++|+++.||..++..+       ..+.|..++.|+  +|.||.+++..
T Consensus       156 ~D~d~~--VR~~aa~~l---~~----~ll~~ll~D~d~~VR~aaa~~l-------~~~~L~~Ll~D~--d~~VR~~aa~~  217 (244)
T 1lrv_A          156 RDEDRQ--VRKLVAKRL---PE----ESLGLMTQDPEPEVRRIVASRL-------RGDDLLELLHDP--DWTVRLAAVEH  217 (244)
T ss_dssp             TCSCHH--HHHHHHHHS---CG----GGGGGSTTCSSHHHHHHHHHHC-------CGGGGGGGGGCS--SHHHHHHHHHH
T ss_pred             cCCCHH--HHHHHHHcC---CH----HHHHHHHcCCCHHHHHHHHHhC-------CHHHHHHHHcCC--CHHHHHHHHHc
Confidence            666665  598888763   22    3455677999999999999874       235688888887  99999999999


Q ss_pred             HhccCChhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 021051          263 LGSIADDQSIGLLKEFAKDPEPIVSQSCEVALS  295 (318)
Q Consensus       263 L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~  295 (318)
                      ++       .+.|..+ +|++..||..+..+|+
T Consensus       218 l~-------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          218 AS-------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             SC-------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             CC-------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            87       3666667 9999999999987654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.47  E-value=1.8e-12  Score=118.45  Aligned_cols=258  Identities=15%  Similarity=0.088  Sum_probs=181.7

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhcc--------CCCChHHHHHHhccCC--CHHHHHHHHHHHhccCC---------
Q 021051           18 EKFLCDRLVDPTQPISERFRALFSLRNL--------KGPGPRDALIRATKDS--SNLLAHEAAFALGQMQD---------   78 (318)
Q Consensus        18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~--------~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~---------   78 (318)
                      ...|+..|.++++  .+ ..+..+++.+        ..++.++.|.+.+.++  ++.+|..++.+|+.+..         
T Consensus        92 k~~ll~~l~~~~~--~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~  168 (462)
T 1ibr_B           92 KNYVLQTLGTETY--RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD  168 (462)
T ss_dssp             HHHHHHHTTCCCS--SS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred             HHHHHHHhCCCCc--hh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh
Confidence            3446777887775  45 5555554432        2368999999999888  99999999999987542         


Q ss_pred             --CCcHHHHHHhhhcCCC--CHHHHHHHHHHHHhcCC-------C----C-cHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           79 --AEAIPALEAVLNDFSL--HPIVRHEAAEALGAIGL-------E----S-NIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        79 --~~~~~~L~~~l~~~~~--~~~vR~~a~~~L~~~~~-------~----~-~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                        ...++.+...+.  ++  ++.||..|+.+++.+-.       .    . .++.+.. +..++++.+|..+..++..+.
T Consensus       169 ~~~~ll~~l~~~l~--~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~vr~~~~~~l~~l~  245 (462)
T 1ibr_B          169 KSNEILTAIIQGMR--KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIM  245 (462)
T ss_dssp             GHHHHHHHHHHHHS--TTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHH
Confidence              124566777777  55  79999999999986421       1    1 2455555 557889999999999999887


Q ss_pred             hhhccCccccccccCCCCcccCCCCCCCCC-ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------------
Q 021051          143 KLKASGSDGSSMTERSPFMSVDPAAPASSC-SSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------------  204 (318)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------------  204 (318)
                      .  .....+...                -. ..++.++..+.+.++.  +|..++..+..+..                 
T Consensus       246 ~--~~~~~~~~~----------------~~~~l~~~~~~~~~~~~~~--v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  305 (462)
T 1ibr_B          246 S--LYYQYMETY----------------MGPALFAITIEAMKSDIDE--VALQGIEFWSNVCDEEMDLAIEASEAAEQGR  305 (462)
T ss_dssp             H--HCGGGCTTT----------------TTTTHHHHHHHHHHCSSHH--HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred             H--HHHHHHHHH----------------HHHHHHHHHHHHHcCCchH--HHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence            2  111100000                02 4677777888777665  48888887665432                 


Q ss_pred             --------------hhHHHHHHHHhC-------CCCHHHHHHHHHHHhccCC---cc----hHHHHHHHHhccCCCHHHH
Q 021051          205 --------------DEAVSAIIDSLG-------ATSALLKHEVAYVLGQLQN---KA----ASAALSDVLRNVNEHPMVR  256 (318)
Q Consensus       205 --------------~~~~~~l~~~l~-------d~~~~vr~~a~~~L~~~~~---~~----~~~~L~~~l~~~~~~~~vr  256 (318)
                                    ...++.+.+.+.       +.++.+|..|+.+|+.+..   ..    .++.+...+.+.  +|.+|
T Consensus       306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~--~~~~r  383 (462)
T 1ibr_B          306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYR  383 (462)
T ss_dssp             CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHH
T ss_pred             CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--ChHHH
Confidence                          234455555553       2357889999888887532   23    455566666765  89999


Q ss_pred             HHHHHHHhccCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcc
Q 021051          257 HEAAEALGSIAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLE  303 (318)
Q Consensus       257 ~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~  303 (318)
                      .+|+.++|.+..           +..++.+...++|+++.||..|+++|+++......
T Consensus       384 ~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             HHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence            999999999863           34788999999999999999999999999876554

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.44  E-value=3.4e-11  Score=112.23  Aligned_cols=268  Identities=16%  Similarity=0.075  Sum_probs=194.1

Q ss_pred             cCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC-
Q 021051           12 KSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA-   79 (318)
Q Consensus        12 ~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-   79 (318)
                      .+....++.|+++|.++++  .++..|+..|..+..           ...++.|+++|.++++.++..|+++|+.+... 
T Consensus        44 ~~~~~~i~~LV~~L~s~~~--~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~  121 (584)
T 3l6x_A           44 NWRQPELPEVIAMLGFRLD--AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR  121 (584)
T ss_dssp             CCCCCCHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred             CcccccHHHHHHHHCCCCH--HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence            4556689999999999886  899999999977643           36899999999999999999999999987752 


Q ss_pred             -----------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC---------CcHHHHHhhhc----------------
Q 021051           80 -----------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE---------SNIPLLKNSLV----------------  123 (318)
Q Consensus        80 -----------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~---------~~~~~L~~~l~----------------  123 (318)
                                 .+++.|+.+|.. ..+..++..+..+|.++...         ..++.|.+++.                
T Consensus       122 ~~~nk~~I~~~GaIp~LV~LL~s-~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~  200 (584)
T 3l6x_A          122 DQDNKIAIKNCDGVPALVRLLRK-ARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP  200 (584)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHH-CCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence                       479999999993 36788999988888776532         24667777331                


Q ss_pred             -cCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC----CCcChHHHHHHHHH
Q 021051          124 -SDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG----EEKGMYERYAALFA  198 (318)
Q Consensus       124 -~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~----~~~~~~~r~~a~~~  198 (318)
                       ...++.|+..+..+|.++..  ..... ...     +.  .      ....++.|+.++.+    .+........|+.+
T Consensus       201 ~~~~d~~V~~nAa~~L~NLs~--~~~~~-R~~-----i~--~------~~Gli~~LV~~L~~~~~~~~~~~~~~enav~a  264 (584)
T 3l6x_A          201 RHIEWESVLTNTAGCLRNVSS--ERSEA-RRK-----LR--E------CDGLVDALIFIVQAEIGQKDSDSKLVENCVCL  264 (584)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTS--SCHHH-HHH-----HH--H------STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHhc--CCHHH-HHH-----HH--H------cCCcHHHHHHHHHHhhcccCccHHHHHHHHHH
Confidence             12368999999999999861  00000 000     00  0      01246677777753    22222346677777


Q ss_pred             HHhCC------------------------------------ChhHHHHHHHHhC-CCCHHHHHHHHHHHhccC-------
Q 021051          199 LRNHG------------------------------------GDEAVSAIIDSLG-ATSALLKHEVAYVLGQLQ-------  234 (318)
Q Consensus       199 L~~~~------------------------------------~~~~~~~l~~~l~-d~~~~vr~~a~~~L~~~~-------  234 (318)
                      |.++.                                    ...+++.++.++. ..++.++..|+.+|..+.       
T Consensus       265 L~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~  344 (584)
T 3l6x_A          265 LRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG  344 (584)
T ss_dssp             HHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHH
T ss_pred             HHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcccc
Confidence            75531                                    1244566777774 567999999999997762       


Q ss_pred             --------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC---------hhhHHHHHHhhcCC--------CHHHHHH
Q 021051          235 --------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD---------DQSIGLLKEFAKDP--------EPIVSQS  289 (318)
Q Consensus       235 --------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~~~--------~~~vr~~  289 (318)
                              ....+|.|++++.+.  +..++..|+++|+++..         .++++.|+.++...        ...+...
T Consensus       345 ~~~~~~v~~~~glp~Lv~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~  422 (584)
T 3l6x_A          345 RYIRSALRQEKALSAIADLLTNE--HERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVIS  422 (584)
T ss_dssp             HHHHHHHTSHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHH
Confidence                    135689999999887  89999999999999852         35788999988764        3678899


Q ss_pred             HHHHHHhchhh
Q 021051          290 CEVALSMLEYE  300 (318)
Q Consensus       290 a~~aL~~l~~~  300 (318)
                      |+++|.++--.
T Consensus       423 a~~tL~NL~a~  433 (584)
T 3l6x_A          423 ILNTINEVIAE  433 (584)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhcC
Confidence            99999988544

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.43  E-value=1.1e-11  Score=113.58  Aligned_cols=260  Identities=13%  Similarity=0.121  Sum_probs=187.1

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-------
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD-------   78 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------   78 (318)
                      .++.|+++|.++++  .++..|+..|..+..           ...++.|+++|.++++.++..|+++|..+..       
T Consensus         3 ~l~~lv~~L~s~~~--~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDE--KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCT--HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCH--HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            57889999999987  899999999988642           3568999999999999999999999987653       


Q ss_pred             ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC---------CcHHHHHhhhc-------cC--------CCHHH
Q 021051           79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE---------SNIPLLKNSLV-------SD--------PAQEV  130 (318)
Q Consensus        79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~---------~~~~~L~~~l~-------~d--------~~~~v  130 (318)
                          ..++|.|+++|.. +.++.++..++.+|+++...         ..+|.|.+++.       .+        .++.+
T Consensus        81 ~i~~~G~i~~Lv~lL~~-~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v  159 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHcCCHHHHHHHHhh-CCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHH
Confidence                3679999999983 46899999999999876421         35677888441       12        35678


Q ss_pred             HHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCC-CccHHHHHHHHcC------CCcChHHHHHHHHHHHhCC
Q 021051          131 RETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASS-CSSVDMLREVLLG------EEKGMYERYAALFALRNHG  203 (318)
Q Consensus       131 r~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~L~~~l~~------~~~~~~~r~~a~~~L~~~~  203 (318)
                      .+.++++|.++..  +  +.....+              .. +..++.|..++.+      .+...  ...++..|.++.
T Consensus       160 ~~~a~~aL~nLs~--~--~~~~~~i--------------~~~~g~i~~Lv~lL~~~~~~~~~~~~~--~e~a~~~L~nLs  219 (457)
T 1xm9_A          160 FFNATGCLRNLSS--A--DAGRQTM--------------RNYSGLIDSLMAYVQNCVAASRCDDKS--VENCMCVLHNLS  219 (457)
T ss_dssp             HHHHHHHHHHHTT--S--HHHHHHH--------------TTSTTHHHHHHHHHHHHHHHTCTTCTT--HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcc--C--HHHHHHH--------------HHcCCCHHHHHHHHHhhccccCCchHH--HHHHHHHHHhcc
Confidence            8899999999871  0  1000000              01 1478888888864      23332  444544444321


Q ss_pred             -------------------------------------------------------------ChhHHHHHHHHhC-CCCHH
Q 021051          204 -------------------------------------------------------------GDEAVSAIIDSLG-ATSAL  221 (318)
Q Consensus       204 -------------------------------------------------------------~~~~~~~l~~~l~-d~~~~  221 (318)
                                                                                   +.+.++.+..++. ..++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~  299 (457)
T 1xm9_A          220 YRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA  299 (457)
T ss_dssp             TTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred             cchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence                                                                         1234566667664 44689


Q ss_pred             HHHHHHHHHhccC----------------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC---------hhhHHHHH
Q 021051          222 LKHEVAYVLGQLQ----------------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD---------DQSIGLLK  276 (318)
Q Consensus       222 vr~~a~~~L~~~~----------------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---------~~~~~~L~  276 (318)
                      ++..|+.+|+.+.                +..++|.|++++.+.  +..++..|+++|.++..         ..+++.|.
T Consensus       300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~--~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv  377 (457)
T 1xm9_A          300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG--NSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVT  377 (457)
T ss_dssp             HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC--CHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHH
Confidence            9999999987763                235678999999987  89999999999998842         34688888


Q ss_pred             HhhcCCC------HHHHHHHHHHHHhchhhh
Q 021051          277 EFAKDPE------PIVSQSCEVALSMLEYEQ  301 (318)
Q Consensus       277 ~~l~~~~------~~vr~~a~~aL~~l~~~~  301 (318)
                      +++...+      +.+...++.+|.++-...
T Consensus       378 ~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~  408 (457)
T 1xm9_A          378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQ  408 (457)
T ss_dssp             HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC
T ss_pred             HhccCCCCCCCCcHHHHHHHHHHHHHHHhcC
Confidence            9887653      367788889998886543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.41  E-value=8.4e-12  Score=102.01  Aligned_cols=89  Identities=20%  Similarity=0.313  Sum_probs=59.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh-------
Q 021051          208 VSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD-------  269 (318)
Q Consensus       208 ~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-------  269 (318)
                      ++.|.+++.++++.++..++.+|+.+..           ...++.|++++.+.  ++.+|..|+.+|+++...       
T Consensus        98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~  175 (210)
T 4db6_A           98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQA  175 (210)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            3444444444444444444444444431           34567777777765  677888888877777432       


Q ss_pred             ----hhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051          270 ----QSIGLLKEFAKDPEPIVSQSCEVALSMLE  298 (318)
Q Consensus       270 ----~~~~~L~~~l~~~~~~vr~~a~~aL~~l~  298 (318)
                          ++++.|.+++.++++.++..|.++|.++.
T Consensus       176 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          176 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence                56888889888889999999999998774

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.39  E-value=2.4e-11  Score=99.26  Aligned_cols=164  Identities=22%  Similarity=0.300  Sum_probs=99.7

Q ss_pred             ChHHHHHHhccCCCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC------
Q 021051           49 GPRDALIRATKDSSNLLAHEAAFALGQMQD-----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL------  111 (318)
Q Consensus        49 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~------  111 (318)
                      ...+.|..++.++++.+|..|+++|+.+..           ...++.|++++.  ++++.+|..|+.+|+++..      
T Consensus        12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            445555555555555555555555555432           135666777776  5667777777777776642      


Q ss_pred             -----CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCC
Q 021051          112 -----ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEE  186 (318)
Q Consensus       112 -----~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  186 (318)
                           .+.++.|.. +++++++.+|..++++|+++..                                         .+
T Consensus        90 ~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~-----------------------------------------~~  127 (210)
T 4db6_A           90 QAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIAS-----------------------------------------GG  127 (210)
T ss_dssp             HHHHHTTCHHHHHH-HTTCSCHHHHHHHHHHHHHHTT-----------------------------------------SC
T ss_pred             HHHHHCCCHHHHHH-HHcCCcHHHHHHHHHHHHHHHc-----------------------------------------CC
Confidence                 236777777 5567778888888888887760                                         00


Q ss_pred             cChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHH
Q 021051          187 KGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMV  255 (318)
Q Consensus       187 ~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~v  255 (318)
                      +.   ....   +.   ....++.|.+++.++++.++..++.+|+.+..           ..+++.|++++.+.  ++.+
T Consensus       128 ~~---~~~~---~~---~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v  196 (210)
T 4db6_A          128 NE---QIQA---VI---DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE--NEKI  196 (210)
T ss_dssp             HH---HHHH---HH---HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHH
T ss_pred             HH---HHHH---HH---HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHH
Confidence            00   0000   00   12355666666666666666666666666532           24678888888776  7888


Q ss_pred             HHHHHHHHhccC
Q 021051          256 RHEAAEALGSIA  267 (318)
Q Consensus       256 r~~a~~aL~~~~  267 (318)
                      |..|+.+|+.+.
T Consensus       197 ~~~a~~aL~~l~  208 (210)
T 4db6_A          197 QKEAQEALEKLQ  208 (210)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            888888888765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.38  E-value=2.2e-11  Score=115.84  Aligned_cols=275  Identities=14%  Similarity=0.132  Sum_probs=175.0

Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHhccCCC--C----hHHHHHHhccCCCHHHHHHHHHHHhccCCCCc----HHHHHHh
Q 021051           19 KFLCDRLVDPTQPISERFRALFSLRNLKGP--G----PRDALIRATKDSSNLLAHEAAFALGQMQDAEA----IPALEAV   88 (318)
Q Consensus        19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~--~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~L~~~   88 (318)
                      ...++.+.+++.  ..|......+..+...  +    +++.|.+-|+|+++.+|..|+++||.++.+..    ++.+..+
T Consensus        73 ~~vik~~~s~~~--~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~  150 (618)
T 1w63_A           73 LECLKLIASQKF--TDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKL  150 (618)
T ss_dssp             HHHHHHHHSSSH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCch--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            344455555553  6666666666555442  2    45566677789999999999999999997655    6778888


Q ss_pred             hhcCCCCHHHHHHHHHHHHhcC--CC----CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc----Ccc----cccc
Q 021051           89 LNDFSLHPIVRHEAAEALGAIG--LE----SNIPLLKNSLVSDPAQEVRETCELALERIEKLKAS----GSD----GSSM  154 (318)
Q Consensus        89 l~~~~~~~~vR~~a~~~L~~~~--~~----~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~----~~~----~~~~  154 (318)
                      +.  ++++.||..|+.+++++.  .+    ..++.+.. +..|+++.|+..|+.+|..+......    ...    +...
T Consensus       151 L~--~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~-lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~  227 (618)
T 1w63_A          151 LK--TSNSYLRKKAALCAVHVIRKVPELMEMFLPATKN-LLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRI  227 (618)
T ss_dssp             HH--SCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTT-STTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHH
T ss_pred             Hc--CCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH-HhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            88  899999999999998874  33    35566677 66899999999999999988611000    000    0000


Q ss_pred             ccC-------CCC--c-ccCCCCC---------CC--C----CccHHHHHHHHcC----CCcChHHHHHHHHHHHhCCCh
Q 021051          155 TER-------SPF--M-SVDPAAP---------AS--S----CSSVDMLREVLLG----EEKGMYERYAALFALRNHGGD  205 (318)
Q Consensus       155 l~~-------~~~--~-~~~~~~~---------~~--~----~~~~~~L~~~l~~----~~~~~~~r~~a~~~L~~~~~~  205 (318)
                      +..       ..+  . ..++...         +.  +    +...+.|...+..    .+....+...+++++..+...
T Consensus       228 L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~  307 (618)
T 1w63_A          228 LKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE  307 (618)
T ss_dssp             HHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC
Confidence            000       000  0 0000000         00  0    1112222222211    111223567777777777543


Q ss_pred             -----hHHHHHHHHhCCCCHHHHHHHHHHHhccCC--c----chHHHHHHHHhccCCCHHHHHHHHHHHhccCChh----
Q 021051          206 -----EAVSAIIDSLGATSALLKHEVAYVLGQLQN--K----AASAALSDVLRNVNEHPMVRHEAAEALGSIADDQ----  270 (318)
Q Consensus       206 -----~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~--~----~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~----  270 (318)
                           .+...|..++.++++.+|..++.+|+.+..  +    ...+.+...+.++  +..||..|++.|..+.+..    
T Consensus       308 ~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~--d~~Ir~~alelL~~l~~~~nv~~  385 (618)
T 1w63_A          308 SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDL--DVSIKRRAMELSFALVNGNNIRG  385 (618)
T ss_dssp             HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSS--CHHHHHHHHHHHHHHCCSSSTHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCC--ChhHHHHHHHHHHHHcccccHHH
Confidence                 255667777777888888888888887753  2    2335666667765  7888888888888887653    


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          271 SIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       271 ~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      .++.|.+++.+.+.++|..++.+++.+...
T Consensus       386 iv~eL~~~l~~~d~e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          386 MMKELLYFLDSCEPEFKADCASGIFLAAEK  415 (618)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            566666677777888888888888888664

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.38  E-value=2.9e-12  Score=116.60  Aligned_cols=269  Identities=16%  Similarity=0.167  Sum_probs=188.7

Q ss_pred             hhhHHHHHHhhcCCCC----------CHHHHHHHHHHHhccCC--CC---------hH----------HHHHHhccCCC-
Q 021051           15 PEMEKFLCDRLVDPTQ----------PISERFRALFSLRNLKG--PG---------PR----------DALIRATKDSS-   62 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~----------~~~~r~~A~~~l~~~~~--~~---------~~----------~~L~~~l~d~~-   62 (318)
                      ...++.|+++|...+.          +...|..|+++|.++-.  ++         ++          +.+++++.+.+ 
T Consensus        69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (458)
T 3nmz_A           69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP  148 (458)
T ss_dssp             HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence            3467888999996431          24899999999988743  22         22          33444453321 


Q ss_pred             -H-----HHHH-------HHHHHHhccCCC----------CcHHHHHHhhhc---------CCCCHHHHHHHHHHHHhcC
Q 021051           63 -N-----LLAH-------EAAFALGQMQDA----------EAIPALEAVLND---------FSLHPIVRHEAAEALGAIG  110 (318)
Q Consensus        63 -~-----~vr~-------~a~~aL~~~~~~----------~~~~~L~~~l~~---------~~~~~~vR~~a~~~L~~~~  110 (318)
                       .     .++.       .|+|+|+.+...          .+++.|+.++..         .+.++.++..|+.+|.++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa  228 (458)
T 3nmz_A          149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT  228 (458)
T ss_dssp             SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence             1     1554       899999987642          578899999851         1234778999999998764


Q ss_pred             C------------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHH
Q 021051          111 L------------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDML  178 (318)
Q Consensus       111 ~------------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L  178 (318)
                      .            ...+|.|.. ++..+++.++..++++|.++. +...... ...              +....+++.|
T Consensus       229 ~~~~~~k~~i~~~~GaIp~LV~-LL~s~~~~v~~~A~~aL~nLs-~~~~~~~-k~~--------------I~~~GaI~~L  291 (458)
T 3nmz_A          229 FGDVANKATLCSMKGCMRALVA-QLKSESEDLQQVIASVLRNLS-WRADVNS-KKT--------------LREVGSVKAL  291 (458)
T ss_dssp             TTCHHHHHHHHHCHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHT-SSCCHHH-HHH--------------HHHTTHHHHH
T ss_pred             CCCcccHHHHHHcCCcHHHHHH-HHhCCCHHHHHHHHHHHHHHh-cCCCHHH-HHH--------------HHHcCCHHHH
Confidence            2            124788999 667889999999999999987 2100000 000              0013478999


Q ss_pred             HHHHcC-CCcChHHHHHHHHHHHhCC------------ChhHHHHHHHHhCCCCH----HHHHHHHHHHhccC-----C-
Q 021051          179 REVLLG-EEKGMYERYAALFALRNHG------------GDEAVSAIIDSLGATSA----LLKHEVAYVLGQLQ-----N-  235 (318)
Q Consensus       179 ~~~l~~-~~~~~~~r~~a~~~L~~~~------------~~~~~~~l~~~l~d~~~----~vr~~a~~~L~~~~-----~-  235 (318)
                      +++|.+ ++..  ++..|+.+|+++.            ...+++.|.+++.+.+.    .++..|+.+|..+.     . 
T Consensus       292 V~lLl~s~~~~--v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~  369 (458)
T 3nmz_A          292 MECALEVKKES--TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE  369 (458)
T ss_dssp             HHHHTTCCSHH--HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhcCCCHH--HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH
Confidence            998644 4443  4777777776652            23677888888876543    48888888887653     2 


Q ss_pred             --------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC--C---------hhhHHHHHHhhcCCCHHHHHHHHHHHHh
Q 021051          236 --------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA--D---------DQSIGLLKEFAKDPEPIVSQSCEVALSM  296 (318)
Q Consensus       236 --------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~  296 (318)
                              ..+++.|++++.+.  +..++..|+++|+++.  +         .++++.|.+++.++++.++..|.+||.+
T Consensus       370 ~~~~~i~~~G~i~~Lv~LL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~n  447 (458)
T 3nmz_A          370 DHRQILRENNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN  447 (458)
T ss_dssp             HHHHHHHHTTHHHHHHHHSSCS--CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHcCC--ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence                    35689999999886  8899999999999985  2         2468999999999999999999999999


Q ss_pred             chhhhcch
Q 021051          297 LEYEQLEK  304 (318)
Q Consensus       297 l~~~~~~~  304 (318)
                      +-..++.+
T Consensus       448 L~~~~p~k  455 (458)
T 3nmz_A          448 LMANRPAK  455 (458)
T ss_dssp             HHTCCSCC
T ss_pred             HHcCCHhh
Confidence            98887655

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.34  E-value=2.3e-11  Score=111.57  Aligned_cols=230  Identities=13%  Similarity=0.115  Sum_probs=166.7

Q ss_pred             hHHHHHHhccCCCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-------
Q 021051           50 PRDALIRATKDSSNLLAHEAAFALGQMQD-----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-------  111 (318)
Q Consensus        50 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-------  111 (318)
                      .++.|++.|+++++.++..|+++|..+..           ...+|.|+++|.  ++++.++..|+.+|.++..       
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            57889999999999999999999988652           246899999999  7899999999999988742       


Q ss_pred             ----CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHc----
Q 021051          112 ----ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLL----  183 (318)
Q Consensus       112 ----~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~----  183 (318)
                          .+.+|.|.+++..++++.++..++++|.++.. .   +....              .+.. .+++.|+.++.    
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~-~---~~~~~--------------~i~~-g~i~~Lv~ll~~~~s  141 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS-T---DELKE--------------ELIA-DALPVLADRVIIPFS  141 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-S---SSTHH--------------HHHH-HHHHHHHHHTTHHHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc-C---HHhHH--------------HHHh-ccHHHHHHHHhcccc
Confidence                45789999944337899999999999999981 1   10000              0012 47899999993    


Q ss_pred             ----CCC------cChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhCC------CCHHHHHHHHHHHhccC--
Q 021051          184 ----GEE------KGMYERYAALFALRNHGG-----------DEAVSAIIDSLGA------TSALLKHEVAYVLGQLQ--  234 (318)
Q Consensus       184 ----~~~------~~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~d------~~~~vr~~a~~~L~~~~--  234 (318)
                          ++.      ....+...|+++|.++..           +..++.|..++.+      .+..+...++..|..+.  
T Consensus       142 ~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~  221 (457)
T 1xm9_A          142 GWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR  221 (457)
T ss_dssp             TCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT
T ss_pred             ccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccc
Confidence                221      122346689999988754           2567777777753      23334444443333221  


Q ss_pred             -----------------------------------------------------------CcchHHHHHHHHhccCCCHHH
Q 021051          235 -----------------------------------------------------------NKAASAALSDVLRNVNEHPMV  255 (318)
Q Consensus       235 -----------------------------------------------------------~~~~~~~L~~~l~~~~~~~~v  255 (318)
                                                                                 +..+++.|+.++.+.. ++.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-~~~~  300 (457)
T 1xm9_A          222 LDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK-KDAT  300 (457)
T ss_dssp             HHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC-CHHH
T ss_pred             hhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC-CHHH
Confidence                                                                       2345778888887653 7999


Q ss_pred             HHHHHHHHhccCC----------------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051          256 RHEAAEALGSIAD----------------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQ  301 (318)
Q Consensus       256 r~~a~~aL~~~~~----------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~  301 (318)
                      +..|+++|+++..                .+.++.|.+++.+++..++..|+++|.++..+.
T Consensus       301 ~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~  362 (457)
T 1xm9_A          301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence            9999999988841                245788999999999999999999999997653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.32  E-value=5.2e-11  Score=105.15  Aligned_cols=238  Identities=16%  Similarity=0.115  Sum_probs=139.9

Q ss_pred             HHHHHHHHHhccCC----------CChHHHHHHhccC-----------CCHHHHHHHHHHHhccCCC------------C
Q 021051           34 ERFRALFSLRNLKG----------PGPRDALIRATKD-----------SSNLLAHEAAFALGQMQDA------------E   80 (318)
Q Consensus        34 ~r~~A~~~l~~~~~----------~~~~~~L~~~l~d-----------~~~~vr~~a~~aL~~~~~~------------~   80 (318)
                      ....|+++|+++..          ...++.|+.+|..           .++.+|..|+++|..+...            .
T Consensus        48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G  127 (354)
T 3nmw_A           48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  127 (354)
T ss_dssp             THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence            34455555555532          2567777777731           2356788888888766421            2


Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC------------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALGAIGL------------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG  148 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~------------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~  148 (318)
                      ++|.|+.+|.  ++++.++..|+.+|.++..            ...++.|.+++.+..++.++..++.+|.++..  +..
T Consensus       128 aIp~LV~LL~--s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~--~~~  203 (354)
T 3nmw_A          128 CMRALVAQLK--SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA--HCT  203 (354)
T ss_dssp             HHHHHHHGGG--CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT--TCH
T ss_pred             cHHHHHHHHC--CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--cCh
Confidence            3777777777  6777777777777766532            13466666644455667777777777776651  000


Q ss_pred             ccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcC--hHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHH
Q 021051          149 SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKG--MYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEV  226 (318)
Q Consensus       149 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a  226 (318)
                      .....+.      .        ...+++.|.+++.+++..  ..++..|+.+|.++..         .+. .++..+.. 
T Consensus       204 ~nk~~i~------~--------~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~---------~~a-~~~~~~~~-  258 (354)
T 3nmw_A          204 ENKADIC------A--------VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS---------LIA-TNEDHRQI-  258 (354)
T ss_dssp             HHHHHHH------H--------STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHH---------HHT-TCHHHHHH-
T ss_pred             hhhHHHH------H--------hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHh---------hcc-CCHHHHHH-
Confidence            0000000      0        123566666666544332  1124445444443311         000 11111110 


Q ss_pred             HHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC--C---------hhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 021051          227 AYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA--D---------DQSIGLLKEFAKDPEPIVSQSCEVALS  295 (318)
Q Consensus       227 ~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~  295 (318)
                            +.+..+++.|++++.+.  +..++..|+.+|.++.  +         .++++.|.+++.++++.++..|.++|.
T Consensus       259 ------i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~  330 (354)
T 3nmw_A          259 ------LRENNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR  330 (354)
T ss_dssp             ------HHTTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             ------HHHcCCHHHHHHHHcCC--ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                  11244678888888765  6778888888888775  2         246899999999999999999999999


Q ss_pred             hchhhhcchhhhcc
Q 021051          296 MLEYEQLEKSFEYL  309 (318)
Q Consensus       296 ~l~~~~~~~~~~~~  309 (318)
                      ++......+ ++-.
T Consensus       331 nL~~~~~~~-~~~~  343 (354)
T 3nmw_A          331 NLMANRPAK-YKDA  343 (354)
T ss_dssp             HHHTTCCGG-GC--
T ss_pred             HHHcCCHHH-Hhhh
Confidence            999887766 5443

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.31  E-value=2.1e-10  Score=106.91  Aligned_cols=279  Identities=16%  Similarity=0.090  Sum_probs=194.1

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhccC-CCHHHHHHHHHHHhccCCC---
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATKD-SSNLLAHEAAFALGQMQDA---   79 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~---   79 (318)
                      ..++.|+++|.+++.  .++..|+.+|..+..            ..+++.|+++|.+ .+..++..++.+|..+...   
T Consensus        90 G~Ip~LV~LL~s~~~--~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~  167 (584)
T 3l6x_A           90 KGIPVLVGLLDHPKK--EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI  167 (584)
T ss_dssp             THHHHHHHGGGCSSH--HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred             CCcHHHHHHHCCCCH--HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence            478999999999886  999999999988764            2579999999975 6788888887777655431   


Q ss_pred             ------CcHHHHHHhhh----------------cCCCCHHHHHHHHHHHHhcCCC------------CcHHHHHhhhc--
Q 021051           80 ------EAIPALEAVLN----------------DFSLHPIVRHEAAEALGAIGLE------------SNIPLLKNSLV--  123 (318)
Q Consensus        80 ------~~~~~L~~~l~----------------~~~~~~~vR~~a~~~L~~~~~~------------~~~~~L~~~l~--  123 (318)
                            .+++.|++++.                ...+++.|+..|..+|.++...            ..++.|+..+.  
T Consensus       168 k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~  247 (584)
T 3l6x_A          168 KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE  247 (584)
T ss_dssp             HHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred             hHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence                  35788888761                0134689999999999887532            33556666332  


Q ss_pred             ---cCCCHHHHHHHHHHHHHHHhhhcc-C-ccccccccCC---C--CcccCC--CCCCCCCccHHHHHHHHcCCCcChHH
Q 021051          124 ---SDPAQEVRETCELALERIEKLKAS-G-SDGSSMTERS---P--FMSVDP--AAPASSCSSVDMLREVLLGEEKGMYE  191 (318)
Q Consensus       124 ---~d~~~~vr~~a~~aL~~~~~~~~~-~-~~~~~~l~~~---~--~~~~~~--~~~~~~~~~~~~L~~~l~~~~~~~~~  191 (318)
                         .+++......++.+|.++. +... . ..........   .  .....+  ...+....+++.|+.++.+...+ .+
T Consensus       248 ~~~~~~~~~~~enav~aL~NLs-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~-~v  325 (584)
T 3l6x_A          248 IGQKDSDSKLVENCVCLLRNLS-YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP-AI  325 (584)
T ss_dssp             HHTTCCSCHHHHHHHHHHHHHH-TTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCH-HH
T ss_pred             hcccCccHHHHHHHHHHHHHhh-ccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCH-HH
Confidence               2356778899999999876 2110 0 0000000000   0  000000  01111335677888999654322 35


Q ss_pred             HHHHHHHHHhCC---------------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC---------cchHHHHHHHHh
Q 021051          192 RYAALFALRNHG---------------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN---------KAASAALSDVLR  247 (318)
Q Consensus       192 r~~a~~~L~~~~---------------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~---------~~~~~~L~~~l~  247 (318)
                      +..|+.+|.++.               ....++.|.++|.+++..++..|+.+|+.+..         ..+++.|+++|.
T Consensus       326 ~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~  405 (584)
T 3l6x_A          326 LEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLP  405 (584)
T ss_dssp             HHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhc
Confidence            889999997772               13568889999999999999999999998743         347899999997


Q ss_pred             ccCC------CHHHHHHHHHHHhcc--CC---------hhhHHHHHHhhcCC--CHHHHHHHHHHHHhch
Q 021051          248 NVNE------HPMVRHEAAEALGSI--AD---------DQSIGLLKEFAKDP--EPIVSQSCEVALSMLE  298 (318)
Q Consensus       248 ~~~~------~~~vr~~a~~aL~~~--~~---------~~~~~~L~~~l~~~--~~~vr~~a~~aL~~l~  298 (318)
                      +...      +..+...|+.+|+++  ++         .++++.|..++.+.  .+.+++.|.++|..+-
T Consensus       406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~  475 (584)
T 3l6x_A          406 GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW  475 (584)
T ss_dssp             SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred             CCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence            6521      367899999999876  32         35799999999875  8899999999999874

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.26  E-value=6.5e-13  Score=110.59  Aligned_cols=166  Identities=19%  Similarity=0.148  Sum_probs=123.4

Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHH
Q 021051           20 FLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVR   99 (318)
Q Consensus        20 ~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR   99 (318)
                      .+..++.|+++  .||..++..+.       .+.|..+++|+++.||..++..+   .    .+.|..+++  |+++.||
T Consensus        78 ~l~~L~~D~~~--~VR~~aA~~L~-------~~~L~~ll~D~d~~VR~~aA~~l---~----~~~L~~L~~--D~d~~VR  139 (244)
T 1lrv_A           78 ALTPLIRDSDE--VVRRAVAYRLP-------REQLSALMFDEDREVRITVADRL---P----LEQLEQMAA--DRDYLVR  139 (244)
T ss_dssp             GGGGGTTCSSH--HHHHHHHTTSC-------SGGGGGTTTCSCHHHHHHHHHHS---C----TGGGGGGTT--CSSHHHH
T ss_pred             HHHHHccCcCH--HHHHHHHHHCC-------HHHHHHHHcCCCHHHHHHHHHhC---C----HHHHHHHHc--CCCHHHH
Confidence            35666777775  99999997643       24677888999999999999965   2    245666677  9999999


Q ss_pred             HHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHH
Q 021051          100 HEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLR  179 (318)
Q Consensus       100 ~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~  179 (318)
                      ..++..+   .    .+.+.. +.+|+++.||..++..+   +                                .+.+.
T Consensus       140 ~~aA~~l---~----~~~l~~-l~~D~d~~VR~~aa~~l---~--------------------------------~~ll~  176 (244)
T 1lrv_A          140 AYVVQRI---P----PGRLFR-FMRDEDRQVRKLVAKRL---P--------------------------------EESLG  176 (244)
T ss_dssp             HHHHHHS---C----GGGGGG-TTTCSCHHHHHHHHHHS---C--------------------------------GGGGG
T ss_pred             HHHHHhc---C----HHHHHH-HHcCCCHHHHHHHHHcC---C--------------------------------HHHHH
Confidence            9999853   2    234445 77999999999988752   2                                12344


Q ss_pred             HHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHH
Q 021051          180 EVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEA  259 (318)
Q Consensus       180 ~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a  259 (318)
                      .++.|+++.  ||..++..+       ..+.|..++.|++|.||..++..++       .+.|..+ +|+  ++.||.++
T Consensus       177 ~ll~D~d~~--VR~aaa~~l-------~~~~L~~Ll~D~d~~VR~~aa~~l~-------~~~L~~L-~D~--~~~VR~aa  237 (244)
T 1lrv_A          177 LMTQDPEPE--VRRIVASRL-------RGDDLLELLHDPDWTVRLAAVEHAS-------LEALREL-DEP--DPEVRLAI  237 (244)
T ss_dssp             GSTTCSSHH--HHHHHHHHC-------CGGGGGGGGGCSSHHHHHHHHHHSC-------HHHHHHC-CCC--CHHHHHHH
T ss_pred             HHHcCCCHH--HHHHHHHhC-------CHHHHHHHHcCCCHHHHHHHHHcCC-------HHHHHHc-cCC--CHHHHHHH
Confidence            566777776  599998764       2356777889999999999999986       3556555 766  99999999


Q ss_pred             HHHHhc
Q 021051          260 AEALGS  265 (318)
Q Consensus       260 ~~aL~~  265 (318)
                      .+.||.
T Consensus       238 ~~~L~~  243 (244)
T 1lrv_A          238 AGRLGI  243 (244)
T ss_dssp             HCCC--
T ss_pred             HHHhCC
Confidence            988763

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.26  E-value=3.1e-10  Score=103.61  Aligned_cols=243  Identities=15%  Similarity=0.103  Sum_probs=164.6

Q ss_pred             ChhhHHHHHHhhcCC--CCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCC--CHHHHHHHHHHHhccCC
Q 021051           14 SPEMEKFLCDRLVDP--TQPISERFRALFSLRNLKG-----------PGPRDALIRATKDS--SNLLAHEAAFALGQMQD   78 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~--~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~   78 (318)
                      -++.++.|...+.++  ++  .+|..++.+++.+..           +...+.+.+.++++  ++.+|..|+++++.+-.
T Consensus       126 w~~ll~~L~~~l~~~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~  203 (462)
T 1ibr_B          126 WPELIPQLVANVTNPNSTE--HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (462)
T ss_dssp             CTTHHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHhccCCCCH--HHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            367889999999887  64  899999999887542           23556677777887  79999999999986321


Q ss_pred             C------------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----------CC-CcHHHHHhhhccCCCHHHHHHHH
Q 021051           79 A------------EAIPALEAVLNDFSLHPIVRHEAAEALGAIG----------LE-SNIPLLKNSLVSDPAQEVRETCE  135 (318)
Q Consensus        79 ~------------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----------~~-~~~~~L~~~l~~d~~~~vr~~a~  135 (318)
                      .            ..++.+.+.+.  ++++.+|..++++|+.+.          -+ ..++.+.. ..++.++.||..++
T Consensus       204 ~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~v~~~a~  280 (462)
T 1ibr_B          204 FTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE-AMKSDIDEVALQGI  280 (462)
T ss_dssp             TTHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH-HHHCSSHHHHHHHH
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCchHHHHHHH
Confidence            0            02444555555  789999999999997653          12 55666666 44788999999999


Q ss_pred             HHHHHHHhhhccCccccccccCCCCcccCCC-CCCC------CCccHHHHHHHHcCC-----CcChHHHHHHHHHHHhCC
Q 021051          136 LALERIEKLKASGSDGSSMTERSPFMSVDPA-APAS------SCSSVDMLREVLLGE-----EKGMYERYAALFALRNHG  203 (318)
Q Consensus       136 ~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~------~~~~~~~L~~~l~~~-----~~~~~~r~~a~~~L~~~~  203 (318)
                      ..+..+.+......    .+.........+. ....      -...++.++..+.+.     +....+|..|..+|+.+.
T Consensus       281 ~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~  356 (462)
T 1ibr_B          281 EFWSNVCDEEMDLA----IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA  356 (462)
T ss_dssp             HHHHHHHHHHHHHH----HHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHH
Confidence            99888762110000    0000000000000 0000      023456677777532     111235999988887753


Q ss_pred             C-------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051          204 G-------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGS  265 (318)
Q Consensus       204 ~-------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~  265 (318)
                      .       +..++.+.+.+++++|.+|..++.++|.+..           +..+|.|...+.|+  ++.||.+|+++|++
T Consensus       357 ~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~  434 (462)
T 1ibr_B          357 TCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP--SVVVRDTAAWTVGR  434 (462)
T ss_dssp             HHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS--CHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence            2       2455666678889999999999999998753           34788999999987  89999999999999


Q ss_pred             cC
Q 021051          266 IA  267 (318)
Q Consensus       266 ~~  267 (318)
                      +.
T Consensus       435 ~~  436 (462)
T 1ibr_B          435 IC  436 (462)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.25  E-value=2.6e-10  Score=112.52  Aligned_cols=274  Identities=17%  Similarity=0.105  Sum_probs=183.1

Q ss_pred             ChhhHHHHHHhhcCC--CCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCC--CHHHHHHHHHHHhccCC
Q 021051           14 SPEMEKFLCDRLVDP--TQPISERFRALFSLRNLKG-----------PGPRDALIRATKDS--SNLLAHEAAFALGQMQD   78 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~--~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~   78 (318)
                      -++.++.|...+.++  ++  .+|..++..++.+..           +..++.+.+.+.++  ++.+|..++++++.+-.
T Consensus       126 w~~ll~~l~~~l~~~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~  203 (876)
T 1qgr_A          126 WPELIPQLVANVTNPNSTE--HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (876)
T ss_dssp             CTTHHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred             cHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence            356888899999887  64  899999998886642           23455566667766  68999999999986431


Q ss_pred             C------------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------C-CcHHHHHhhhccCCCHHHHHHHH
Q 021051           79 A------------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------E-SNIPLLKNSLVSDPAQEVRETCE  135 (318)
Q Consensus        79 ~------------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~-~~~~~L~~~l~~d~~~~vr~~a~  135 (318)
                      .            ..++.+...+.  ++++.+|..++.+|+.+..          . ..++.+.. ...+.++.||..+.
T Consensus       204 ~~~~~~~~~~~~~~il~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~v~~~al  280 (876)
T 1qgr_A          204 FTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE-AMKSDIDEVALQGI  280 (876)
T ss_dssp             GCHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHH-HHTCSSHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HhcCCchHHHHHHH
Confidence            0            13555566665  7889999999998886531          1 45566666 44688899999999


Q ss_pred             HHHHHHHhhhccCc-cccccc--cCCCCcccCCCCCCC---CCccHHHHHHHHcC-------CCcChHHHHHHHHHHHhC
Q 021051          136 LALERIEKLKASGS-DGSSMT--ERSPFMSVDPAAPAS---SCSSVDMLREVLLG-------EEKGMYERYAALFALRNH  202 (318)
Q Consensus       136 ~aL~~~~~~~~~~~-~~~~~l--~~~~~~~~~~~~~~~---~~~~~~~L~~~l~~-------~~~~~~~r~~a~~~L~~~  202 (318)
                      ..+..+........ ...+..  ...+..   +.....   -+..++.++..+..       +++.  +|..+..+++.+
T Consensus       281 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~--~r~~a~~~l~~l  355 (876)
T 1qgr_A          281 EFWSNVCDEEMDLAIEASEAAEQGRPPEH---TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN--PCKAAGVCLMLL  355 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCSS---CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCC--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHhhhhccccccCCCccc---hhHHHHHHHHHHHhHHHHHHhhcccccccccccH--HHHHHHHHHHHH
Confidence            88877762110000 000000  000000   000000   02345667777752       3344  599988888766


Q ss_pred             CC-------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCCc-----------chHHHHHHHHhccCCCHHHHHHHHHHHh
Q 021051          203 GG-------DEAVSAIIDSLGATSALLKHEVAYVLGQLQNK-----------AASAALSDVLRNVNEHPMVRHEAAEALG  264 (318)
Q Consensus       203 ~~-------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~~~~~~~~vr~~a~~aL~  264 (318)
                      ..       +..++.+...+.+++|.+|..++.++|.+...           ..++.|+..+.|+  ++.||..|+++|+
T Consensus       356 ~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~--~~~vr~~a~~~l~  433 (876)
T 1qgr_A          356 ATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP--SVVVRDTAAWTVG  433 (876)
T ss_dssp             HHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred             HHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence            32       24455666777899999999999999988642           2467788888886  8999999999999


Q ss_pred             ccCC------------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          265 SIAD------------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       265 ~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      ++..            +..++.|...+.++ +.||..++++|..+...
T Consensus       434 ~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          434 RICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            8752            13566777777775 89999999999988755

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.24  E-value=5.2e-10  Score=110.12  Aligned_cols=276  Identities=16%  Similarity=0.135  Sum_probs=166.2

Q ss_pred             hhhHHHHHHhhcCC-CCCHHHHHHHHHHHhccCC---CC----------hHHHHHHhccCC--CHHHHHHHHHHHhccC-
Q 021051           15 PEMEKFLCDRLVDP-TQPISERFRALFSLRNLKG---PG----------PRDALIRATKDS--SNLLAHEAAFALGQMQ-   77 (318)
Q Consensus        15 ~~~~~~L~~~L~~~-~~~~~~r~~A~~~l~~~~~---~~----------~~~~L~~~l~d~--~~~vr~~a~~aL~~~~-   77 (318)
                      ++.++.|.+.+.++ ++  .+|..++..++.+..   ++          ..+.+...+.++  ++.+|..++.+++.+- 
T Consensus       133 ~~ll~~L~~~l~~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~  210 (861)
T 2bpt_A          133 PELMKIMVDNTGAEQPE--NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI  210 (861)
T ss_dssp             HHHHHHHHHHTSTTSCH--HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence            45677777777766 43  777777776654421   11          233334455665  6778888877776531 


Q ss_pred             --C---------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC---C--------CcHHHHHhhhccCCCHHHHHHHH
Q 021051           78 --D---------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL---E--------SNIPLLKNSLVSDPAQEVRETCE  135 (318)
Q Consensus        78 --~---------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~---~--------~~~~~L~~~l~~d~~~~vr~~a~  135 (318)
                        .         ...++.|...+.  ++++.+|..++.+|+.+..   .        ..++.+.. ...|.++.+|..+.
T Consensus       211 ~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~vr~~a~  287 (861)
T 2bpt_A          211 FIKNNMEREGERNYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIA-TMKSPNDKVASMTV  287 (861)
T ss_dssp             GCHHHHTSHHHHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHH-HTTCSSHHHHHHHH
T ss_pred             HHHHHccChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHH
Confidence              0         013444455555  6777788777777765531   1        23333334 34577778888777


Q ss_pred             HHHHHHHhhhccCccc-cccccCCCCcccCCCCCCCCCccHHHHHHHHcCCC-----cChHHHHHHHHHHHhCCC-----
Q 021051          136 LALERIEKLKASGSDG-SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEE-----KGMYERYAALFALRNHGG-----  204 (318)
Q Consensus       136 ~aL~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-----~~~~~r~~a~~~L~~~~~-----  204 (318)
                      ..+..+.......... .+. ...+......... .-...++.++..+.+.+     ....+|..+..+|+.+..     
T Consensus       288 ~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~  365 (861)
T 2bpt_A          288 EFWSTICEEEIDIAYELAQF-PQSPLQSYNFALS-SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH  365 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCSCCCCCHHHH-HHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhhhhhhhhc-cCCchhhHHHHHH-HHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh
Confidence            7776665110000000 000 0000000000000 00234667777776422     223468888888876532     


Q ss_pred             --hhHHHHHHHHhCCCCHHHHHHHHHHHhccCCc-----------chHHHHHHHHhccCCCHHHHHHHHHHHhccCC---
Q 021051          205 --DEAVSAIIDSLGATSALLKHEVAYVLGQLQNK-----------AASAALSDVLRNVNEHPMVRHEAAEALGSIAD---  268 (318)
Q Consensus       205 --~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---  268 (318)
                        +..++.+.+.+.+.+|.+|..++.++|.+...           ..++.|...+.++  ++.||..++++++++..   
T Consensus       366 ~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~  443 (861)
T 2bpt_A          366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ--SLQVKETTAWCIGRIADSVA  443 (861)
T ss_dssp             GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHhh
Confidence              24556666777899999999999999998642           2456667777776  89999999999998752   


Q ss_pred             ---------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          269 ---------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       269 ---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                               +..++.|.+.++++ +.||..++++|..+...
T Consensus       444 ~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  483 (861)
T 2bpt_A          444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQ  483 (861)
T ss_dssp             GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHh
Confidence                     23567777778776 89999999999987655

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.20  E-value=2.6e-10  Score=112.51  Aligned_cols=259  Identities=14%  Similarity=0.075  Sum_probs=175.5

Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHhcc--------CCCChHHHHHHhccCC--CHHHHHHHHHHHhccCC----------
Q 021051           19 KFLCDRLVDPTQPISERFRALFSLRNL--------KGPGPRDALIRATKDS--SNLLAHEAAFALGQMQD----------   78 (318)
Q Consensus        19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~--------~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~----------   78 (318)
                      ..+.+.|.++++  .+ ..++..++.+        ..++.++.|.+.+.++  ++.+|..++.+|+.+..          
T Consensus        93 ~~ll~~l~~~~~--~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~  169 (876)
T 1qgr_A           93 NYVLHTLGTETY--RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK  169 (876)
T ss_dssp             HHHHHHTTTCCS--SS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG
T ss_pred             HHHHHHhCCCcH--HH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH
Confidence            347777877775  45 5555554432        2378999999999888  99999999999986542          


Q ss_pred             -CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC------C------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhh
Q 021051           79 -AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL------E------SNIPLLKNSLVSDPAQEVRETCELALERIEKLK  145 (318)
Q Consensus        79 -~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~------~------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~  145 (318)
                       ...++.+...+.+.++++.+|..|+.+++.+-.      .      ..++.+.. +..++++.+|..+..++..+..  
T Consensus       170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~-~~~~~~~~vr~~a~~~l~~l~~--  246 (876)
T 1qgr_A          170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMS--  246 (876)
T ss_dssp             HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHH--
Confidence             123455666676211279999999999986421      0      13555666 5578899999999999998872  


Q ss_pred             ccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC---------------------
Q 021051          146 ASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG---------------------  204 (318)
Q Consensus       146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~---------------------  204 (318)
                      .....+...+               ....++.+...+.+.++.  +|..++..+..+..                     
T Consensus       247 ~~~~~~~~~~---------------~~~l~~~~~~~~~~~~~~--v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  309 (876)
T 1qgr_A          247 LYYQYMETYM---------------GPALFAITIEAMKSDIDE--VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH  309 (876)
T ss_dssp             HSGGGCHHHH---------------TTTHHHHHHHHHTCSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred             HhHHHHHHHH---------------HHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHHHHhHhhhhccccccCCCccc
Confidence            1110000000               013577777777666555  48888766654421                     


Q ss_pred             ----------hhHHHHHHHHhC-------CCCHHHHHHHHHHHhccCC---c----chHHHHHHHHhccCCCHHHHHHHH
Q 021051          205 ----------DEAVSAIIDSLG-------ATSALLKHEVAYVLGQLQN---K----AASAALSDVLRNVNEHPMVRHEAA  260 (318)
Q Consensus       205 ----------~~~~~~l~~~l~-------d~~~~vr~~a~~~L~~~~~---~----~~~~~L~~~l~~~~~~~~vr~~a~  260 (318)
                                ...++.+.+.+.       +.+|.+|..+..+|+.+..   .    ..++.+...+.+.  +|.+|.+|+
T Consensus       310 ~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~--~~~~r~~a~  387 (876)
T 1qgr_A          310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAV  387 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCC--ChHHHHHHH
Confidence                      123444555553       3468899998888877542   2    3445555666665  899999999


Q ss_pred             HHHhccCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          261 EALGSIAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       261 ~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      .+++.+..           +..++.+...++|+++.||..|+++|+++.....
T Consensus       388 ~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             HHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence            99999863           1257778888899999999999999999877644

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.19  E-value=7.1e-10  Score=109.18  Aligned_cols=258  Identities=13%  Similarity=0.051  Sum_probs=178.3

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhccC--------CCChHHHHHHhccCC-CHHHHHHHHHHHhccCC----C-----
Q 021051           18 EKFLCDRLVDPTQPISERFRALFSLRNLK--------GPGPRDALIRATKDS-SNLLAHEAAFALGQMQD----A-----   79 (318)
Q Consensus        18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~--------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----~-----   79 (318)
                      ...|++.|.++++  .+|..+..+++.+.        .++.++.|.+.+.++ ++.+|..++..++.+..    .     
T Consensus        97 k~~ll~~l~~~~~--~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~  174 (861)
T 2bpt_A           97 KTNALTALVSIEP--RIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALV  174 (861)
T ss_dssp             HHHHHHHHTCSSH--HHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTG
T ss_pred             HHHHHHHHCCCch--HHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHH
Confidence            3457778888776  88999988887742        246788889999888 99999999998876532    1     


Q ss_pred             Cc----HHHHHHhhhcCCC--CHHHHHHHHHHHHhcC---C---------CCcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051           80 EA----IPALEAVLNDFSL--HPIVRHEAAEALGAIG---L---------ESNIPLLKNSLVSDPAQEVRETCELALERI  141 (318)
Q Consensus        80 ~~----~~~L~~~l~~~~~--~~~vR~~a~~~L~~~~---~---------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~  141 (318)
                      ..    ++.+...+.  ++  ++.||..++++++.+-   .         ...++.|.. +..++++.+|..+..++..+
T Consensus       175 ~~~~~ll~~l~~~l~--~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~~~~~r~~a~~~l~~l  251 (861)
T 2bpt_A          175 SSSNNILIAIVQGAQ--STETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCE-ATQAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             GGHHHHHHHHHHHHS--TTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHH
Confidence            12    344455566  55  8999999999998641   0         124555666 55788999999999999988


Q ss_pred             HhhhccCccccccccCCCCcccCCCCCCCCC-ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------------
Q 021051          142 EKLKASGSDGSSMTERSPFMSVDPAAPASSC-SSVDMLREVLLGEEKGMYERYAALFALRNHGG----------------  204 (318)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------------  204 (318)
                      .. ... ..+...+                . ..++.+...+.+.+..  +|..++..+..+..                
T Consensus       252 ~~-~~~-~~~~~~l----------------~~~l~~~~~~~~~~~~~~--vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~  311 (861)
T 2bpt_A          252 MS-KYY-TFMKPYM----------------EQALYALTIATMKSPNDK--VASMTVEFWSTICEEEIDIAYELAQFPQSP  311 (861)
T ss_dssp             HH-HHG-GGCHHHH----------------HHTHHHHHHHHTTCSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred             HH-HHH-HHHHHHH----------------HHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHHHHHHhhhhhhhhccCCc
Confidence            72 111 0000000                1 2455566666666554  58888887765422                


Q ss_pred             -----------hhHHHHHHHHhCC-------CCHHHHHHHHHHHhccCC---c----chHHHHHHHHhccCCCHHHHHHH
Q 021051          205 -----------DEAVSAIIDSLGA-------TSALLKHEVAYVLGQLQN---K----AASAALSDVLRNVNEHPMVRHEA  259 (318)
Q Consensus       205 -----------~~~~~~l~~~l~d-------~~~~vr~~a~~~L~~~~~---~----~~~~~L~~~l~~~~~~~~vr~~a  259 (318)
                                 ...++.+...+.+       .++.+|..+..+|+.+..   .    ..++.+.+.+.+.  +|.+|.+|
T Consensus       312 ~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~~a  389 (861)
T 2bpt_A          312 LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITAD--NWRNREAA  389 (861)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS--SHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCC--ChhHHHHH
Confidence                       2344556666653       347899999888877542   2    3445555566665  89999999


Q ss_pred             HHHHhccCCh-----------hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          260 AEALGSIADD-----------QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       260 ~~aL~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      +.+++.+...           ..++.|.+.+.|+++.||..++++|+++.....
T Consensus       390 ~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  443 (861)
T 2bpt_A          390 VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA  443 (861)
T ss_dssp             HHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence            9999998631           246777788889999999999999998876543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.11  E-value=2.3e-09  Score=101.78  Aligned_cols=274  Identities=11%  Similarity=0.097  Sum_probs=153.0

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhccCC--CC----hHHHHHHhccCCCHHHHHHHHHHHhccCCCCc----HHHHHH
Q 021051           18 EKFLCDRLVDPTQPISERFRALFSLRNLKG--PG----PRDALIRATKDSSNLLAHEAAFALGQMQDAEA----IPALEA   87 (318)
Q Consensus        18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~L~~   87 (318)
                      ....++.+.+++.  ..|..+.-.+..+..  ++    ++..+.+-++|+++.+|..|+++|+.++.+..    .+.+.+
T Consensus        76 ~~~vvkl~~s~~~--~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~  153 (621)
T 2vgl_A           76 HMEAVNLLSSNRY--TEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPK  153 (621)
T ss_dssp             HHHHHHGGGCSCH--HHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHH
T ss_pred             HHHHHHHhcCCCH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence            3444556666654  566655555555422  33    34444455566777777777777777665433    344445


Q ss_pred             hh--hcCCCCHHHHHHHHHHHHhcC--------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC------ccc
Q 021051           88 VL--NDFSLHPIVRHEAAEALGAIG--------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG------SDG  151 (318)
Q Consensus        88 ~l--~~~~~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~------~~~  151 (318)
                      ++  .  |.++.||..|+.++.++-        .+...+.+.+ ++.|+++.|+.+++.++..+. ..+..      +..
T Consensus       154 ~l~~~--d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~-lL~d~d~~V~~~a~~~l~~i~-~~~~~~~~~~~~~~  229 (621)
T 2vgl_A          154 ILVAG--DTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVH-LLNDQHLGVVTAATSLITTLA-QKNPEEFKTSVSLA  229 (621)
T ss_dssp             HHHCS--SSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHH-HTTCSCHHHHHHHHHHHHHHH-HHCHHHHTTHHHHH
T ss_pred             HHhCC--CCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHH-HhCCCCccHHHHHHHHHHHHH-HhChHHHHHHHHHH
Confidence            55  4  667777777776665542        1245666666 446677777777766666654 11100      000


Q ss_pred             c----ccccCCCC-----c---ccCCC------------CCCCCCccHH-------HHHHHHcCC---------CcChHH
Q 021051          152 S----SMTERSPF-----M---SVDPA------------APASSCSSVD-------MLREVLLGE---------EKGMYE  191 (318)
Q Consensus       152 ~----~~l~~~~~-----~---~~~~~------------~~~~~~~~~~-------~L~~~l~~~---------~~~~~~  191 (318)
                      .    ..+....+     .   ..+|.            ....+++...       .++..+.+.         +....+
T Consensus       230 ~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aV  309 (621)
T 2vgl_A          230 VSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAV  309 (621)
T ss_dssp             HHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHH
Confidence            0    00000000     0   00000            0000111111       222221111         111235


Q ss_pred             HHHHHHHHHhCCCh-----hHHHHHHHHhCCCCHHHHHHHHHHHhccCCc--------chHHHHHHHHh-ccCCCHHHHH
Q 021051          192 RYAALFALRNHGGD-----EAVSAIIDSLGATSALLKHEVAYVLGQLQNK--------AASAALSDVLR-NVNEHPMVRH  257 (318)
Q Consensus       192 r~~a~~~L~~~~~~-----~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~--------~~~~~L~~~l~-~~~~~~~vr~  257 (318)
                      ...++.++-.+...     .++..|..++.++++++|..++..|..+...        ...+.++..+. ++  |..||.
T Consensus       310 l~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~--d~~Ir~  387 (621)
T 2vgl_A          310 LFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTER--DVSVRQ  387 (621)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCC--CHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCC--CHhHHH
Confidence            66777777666542     3556677778888999999999998887532        22355566666 65  789999


Q ss_pred             HHHHHHhccCChhh----HHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051          258 EAAEALGSIADDQS----IGLLKEFAKDPEPIVSQSCEVALSMLEY  299 (318)
Q Consensus       258 ~a~~aL~~~~~~~~----~~~L~~~l~~~~~~vr~~a~~aL~~l~~  299 (318)
                      .+++.|..+.++..    +..|.+++.+.+..+|..++.+++.+..
T Consensus       388 ~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          388 RAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAE  433 (621)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            99999999987653    4445556667788889999988888753

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.06  E-value=1.5e-09  Score=98.88  Aligned_cols=211  Identities=18%  Similarity=0.148  Sum_probs=157.2

Q ss_pred             HHHHHHhccCC----------CChHHHHHHhcc-----------CCCHHHHHHHHHHHhccCC------------CCcHH
Q 021051           37 RALFSLRNLKG----------PGPRDALIRATK-----------DSSNLLAHEAAFALGQMQD------------AEAIP   83 (318)
Q Consensus        37 ~A~~~l~~~~~----------~~~~~~L~~~l~-----------d~~~~vr~~a~~aL~~~~~------------~~~~~   83 (318)
                      .|+++|+++..          ..+++.|..+|.           +.++.++..|+++|..+..            ..++|
T Consensus       167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp  246 (458)
T 3nmz_A          167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR  246 (458)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence            88999988764          367888888883           1346789999999977542            13489


Q ss_pred             HHHHhhhcCCCCHHHHHHHHHHHHhcCC------------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccc
Q 021051           84 ALEAVLNDFSLHPIVRHEAAEALGAIGL------------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDG  151 (318)
Q Consensus        84 ~L~~~l~~~~~~~~vR~~a~~~L~~~~~------------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~  151 (318)
                      .|+.+|.  ++++.++..|+.+|+++..            ...++.|.+++....++.++..++.+|.++..  +.....
T Consensus       247 ~LV~LL~--s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~--~~~~nk  322 (458)
T 3nmz_A          247 ALVAQLK--SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA--HCTENK  322 (458)
T ss_dssp             HHHHGGG--CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH--HCHHHH
T ss_pred             HHHHHHh--CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc--CCHHHH
Confidence            9999999  8999999999999988753            23578888855677789999999999988871  010000


Q ss_pred             cccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcC--hHHHHHHHHHHHhCC-----C---------hhHHHHHHHHh
Q 021051          152 SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKG--MYERYAALFALRNHG-----G---------DEAVSAIIDSL  215 (318)
Q Consensus       152 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--~~~r~~a~~~L~~~~-----~---------~~~~~~l~~~l  215 (318)
                      ..+.      .        ...+++.|..+|.+++..  ..++..|+.+|.++.     +         ...++.|.++|
T Consensus       323 ~~I~------~--------~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL  388 (458)
T 3nmz_A          323 ADIC------A--------VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL  388 (458)
T ss_dssp             HHHH------H--------STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred             HHHH------H--------hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence            0000      0        134799999999876553  124777777776653     2         25678899999


Q ss_pred             CCCCHHHHHHHHHHHhccC--C---------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          216 GATSALLKHEVAYVLGQLQ--N---------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       216 ~d~~~~vr~~a~~~L~~~~--~---------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                      .+.+..++..|+.+|+.+.  +         ..+++.|++++.+.  ++.+|..|+.+|.++.
T Consensus       389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~--~~~v~~~Aa~AL~nL~  449 (458)
T 3nmz_A          389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK--HKMIAMGSAAALRNLM  449 (458)
T ss_dssp             SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS--SHHHHHHHHHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHH
Confidence            9999999999999999875  2         34689999999876  8999999999998874

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.04  E-value=1.6e-09  Score=110.96  Aligned_cols=279  Identities=15%  Similarity=0.093  Sum_probs=173.7

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhcc--------CCCChHHHHHHhccCCCHHHHHHHHHHHhccC----C---
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNL--------KGPGPRDALIRATKDSSNLLAHEAAFALGQMQ----D---   78 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~---   78 (318)
                      .+..++.|.+.|.|++  |.+|..|+..++.+        .. ..++.|...+.|+++.+|..++.+|+.+.    .   
T Consensus        46 ~~~il~~Ll~~L~d~~--~~vR~~A~~~L~~l~~~~~~~~~~-~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~  122 (1230)
T 1u6g_C           46 ERKVVKMILKLLEDKN--GEVQNLAVKCLGPLVSKVKEYQVE-TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS  122 (1230)
T ss_dssp             HHHHHHHHHHHTTCSS--HHHHHHHHHHHHHHHTTSCHHHHH-HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence            3567777888888665  48888888887653        25 57778888888888888888888887643    1   


Q ss_pred             ---------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----C------CCcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051           79 ---------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----L------ESNIPLLKNSLVSDPAQEVRETCELALE  139 (318)
Q Consensus        79 ---------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~  139 (318)
                               +..+|.|...+.+ ++++.+|..|+.+++.+.    .      +..++.|.. .+.++++.||..++.+++
T Consensus       123 ~~~~~~~~~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~-~L~~~~~~vR~~a~~al~  200 (1230)
T 1u6g_C          123 GSALAANVCKKITGRLTSAIAK-QEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP-QLTSPRLAVRKRTIIALG  200 (1230)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGG-GGGCSSHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHH
Confidence                     1335556666652 367888888888887653    1      123455666 446778888888888888


Q ss_pred             HHHhhhccC--cc----ccccccCC-CCcccC------------CCCCCC--CCccHHHHHHHHcCCCcChHHHHHHHHH
Q 021051          140 RIEKLKASG--SD----GSSMTERS-PFMSVD------------PAAPAS--SCSSVDMLREVLLGEEKGMYERYAALFA  198 (318)
Q Consensus       140 ~~~~~~~~~--~~----~~~~l~~~-~~~~~~------------~~~~~~--~~~~~~~L~~~l~~~~~~~~~r~~a~~~  198 (318)
                      .+.......  ..    +...+... ......            ....+.  -...++.++..+.++++.+  |..++.+
T Consensus       201 ~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~v--R~~a~~~  278 (1230)
T 1u6g_C          201 HLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDEL--REYCIQA  278 (1230)
T ss_dssp             HHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTT--HHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHH--HHHHHHH
Confidence            776211100  00    00111100 000000            000000  2467899999998887775  9888888


Q ss_pred             HHhCC---Ch-------hHHHHHHHHhC-------------------------------------CCCHHHHHHHHHHHh
Q 021051          199 LRNHG---GD-------EAVSAIIDSLG-------------------------------------ATSALLKHEVAYVLG  231 (318)
Q Consensus       199 L~~~~---~~-------~~~~~l~~~l~-------------------------------------d~~~~vr~~a~~~L~  231 (318)
                      ++.+.   ..       ..++.+.+.+.                                     +..|.+|..|+.+++
T Consensus       279 l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~  358 (1230)
T 1u6g_C          279 FESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD  358 (1230)
T ss_dssp             HHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHH
T ss_pred             HHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHH
Confidence            77642   11       12233322221                                     113567888988888


Q ss_pred             ccCC----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC----C-------------------------hhhH
Q 021051          232 QLQN----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA----D-------------------------DQSI  272 (318)
Q Consensus       232 ~~~~----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----~-------------------------~~~~  272 (318)
                      .+..          +..++.|...+.+.  ++.||.+++.+++.+-    .                         +..+
T Consensus       359 ~l~~~~~~~~~~~~~~l~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll  436 (1230)
T 1u6g_C          359 AVVSTRHEMLPEFYKTVSPALISRFKER--EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIV  436 (1230)
T ss_dssp             HHHTTCCTTHHHHHTTTHHHHHSTTSCS--SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHH
T ss_pred             HHHHhchhHHHHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHH
Confidence            6532          23456666666665  7899999998876541    1                         2345


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051          273 GLLKEFAKDPEPIVSQSCEVALSMLEYEQ  301 (318)
Q Consensus       273 ~~L~~~l~~~~~~vr~~a~~aL~~l~~~~  301 (318)
                      +.+.+.++++++.+|..++.+|+.+-...
T Consensus       437 ~~l~~~l~~~~~~vr~~~~~~L~~l~~~~  465 (1230)
T 1u6g_C          437 KALHKQMKEKSVKTRQCCFNMLTELVNVL  465 (1230)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence            56666689999999999999999876653

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.00  E-value=1.2e-08  Score=87.71  Aligned_cols=61  Identities=20%  Similarity=0.180  Sum_probs=40.8

Q ss_pred             CcHHHHHH-hhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           80 EAIPALEA-VLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        80 ~~~~~L~~-~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      ..++.|+. +|.  ++++.+|..|+++|+++..           .+.++.|..++..++++.+|..++++|+.+.
T Consensus        81 G~l~~Lv~~lL~--s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~  153 (296)
T 1xqr_A           81 SGMHLLVGRYLE--AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV  153 (296)
T ss_dssp             THHHHHHHTTTT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            34566666 666  5666666666666665521           2467788885544667888888888888775

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.98  E-value=3.1e-09  Score=108.78  Aligned_cols=200  Identities=14%  Similarity=0.165  Sum_probs=127.3

Q ss_pred             HHHHHhhhcCCCCHHHHHHHHHHHHhcCC-------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccc
Q 021051           83 PALEAVLNDFSLHPIVRHEAAEALGAIGL-------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMT  155 (318)
Q Consensus        83 ~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l  155 (318)
                      +.|.+.+.  ++++.+|..|+.+|+.+..       +..++.|.. ...|+++.+|..+..+|+.+.........     
T Consensus        51 ~~Ll~~L~--d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~-~l~d~~~~vR~~a~~~L~~i~~~l~~~~~-----  122 (1230)
T 1u6g_C           51 KMILKLLE--DKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCT-NMLSDKEQLRDISSIGLKTVIGELPPASS-----  122 (1230)
T ss_dssp             HHHHHHTT--CSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-HTTCSSSHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHhc--CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHhCCCccc-----
Confidence            33444444  4444455444444444321       123444555 33566777777777777776521100000     


Q ss_pred             cCCCCcccCCCCCCCCCccHHHHHHHHcC-CCcChHHHHHHHHHHHhCC----C------hhHHHHHHHHhCCCCHHHHH
Q 021051          156 ERSPFMSVDPAAPASSCSSVDMLREVLLG-EEKGMYERYAALFALRNHG----G------DEAVSAIIDSLGATSALLKH  224 (318)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~L~~~~----~------~~~~~~l~~~l~d~~~~vr~  224 (318)
                       ...+...      .-++.++.|+..+.+ +++  .+|..|+.+++.+.    .      +..++.+...+.++++.+|.
T Consensus       123 -~~~~~~~------~~~~llp~L~~~l~~~~~~--~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~  193 (1230)
T 1u6g_C          123 -GSALAAN------VCKKITGRLTSAIAKQEDV--SVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRK  193 (1230)
T ss_dssp             --CCTHHH------HHHHHHHHHHHHHSCCSCH--HHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHH
T ss_pred             -ccchHHH------HHHHHHHHHHHHHcCCCch--HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence             0000000      013467888888874 444  46999999988753    2      35667777778899999999


Q ss_pred             HHHHHHhccCC-------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----------hhhHHHHHHhhcCCCHHHH
Q 021051          225 EVAYVLGQLQN-------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD----------DQSIGLLKEFAKDPEPIVS  287 (318)
Q Consensus       225 ~a~~~L~~~~~-------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr  287 (318)
                      .|+.+++.+..       +..++.|++.+.+.+ ++.+|..++++++.+..          +..++.+...+.++++.||
T Consensus       194 ~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR  272 (1230)
T 1u6g_C          194 RTIIALGHLVMSCGNIVFVDLIEHLLSELSKND-SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR  272 (1230)
T ss_dssp             HHHHHHHHHTTTC----CTTHHHHHHHHHHHTC-SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            99999998753       245888888887652 45788888998887642          4578999999999899999


Q ss_pred             HHHHHHHHhchhh
Q 021051          288 QSCEVALSMLEYE  300 (318)
Q Consensus       288 ~~a~~aL~~l~~~  300 (318)
                      ..+..+++.+-..
T Consensus       273 ~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          273 EYCIQAFESFVRR  285 (1230)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876553

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.98  E-value=4.3e-09  Score=88.00  Aligned_cols=189  Identities=19%  Similarity=0.188  Sum_probs=125.9

Q ss_pred             HHHHHhhhcCCCCHHHHHHHHHHHHhcC-------C---CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcccc
Q 021051           83 PALEAVLNDFSLHPIVRHEAAEALGAIG-------L---ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGS  152 (318)
Q Consensus        83 ~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------~---~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~  152 (318)
                      +.+.+.+.  +++|..|..|+..|..+-       .   .+..+.|.+.+.+|++..||..++.+++.+......  .  
T Consensus        18 ~~l~~~l~--s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~--~--   91 (242)
T 2qk2_A           18 KDFYDKLE--EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK--R--   91 (242)
T ss_dssp             TTHHHHHT--CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG--G--
T ss_pred             HHHHhhhc--cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh--h--
Confidence            34666777  788888888887776541       1   123556667332599999999999999988721100  0  


Q ss_pred             ccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----hhHHHHHHHHhCCCCHHHHHHHHH
Q 021051          153 SMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----DEAVSAIIDSLGATSALLKHEVAY  228 (318)
Q Consensus       153 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----~~~~~~l~~~l~d~~~~vr~~a~~  228 (318)
                             +...       .+..++.|++.+.|++..  +|..+..+|..+..    ...++.+...+++.++.+|..++.
T Consensus        92 -------~~~~-------~~~ilp~ll~~l~d~~~~--vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~  155 (242)
T 2qk2_A           92 -------FSNY-------ASACVPSLLEKFKEKKPN--VVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETAL  155 (242)
T ss_dssp             -------GHHH-------HHHHHHHHHHGGGCCCHH--HHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             -------HHHH-------HHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHH
Confidence                   0000       023678888988887765  49999888876633    466788888889999999999999


Q ss_pred             HHhcc-CC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 021051          229 VLGQL-QN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALS  295 (318)
Q Consensus       229 ~L~~~-~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~  295 (318)
                      .|+.+ ..           +..+|.|...+.|.  ++.||.+|..+++.+...---..+..++.+-++.-+......+.
T Consensus       156 ~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~--~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~  232 (242)
T 2qk2_A          156 FIARALTRTQPTALNKKLLKLLTTSLVKTLNEP--DPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE  232 (242)
T ss_dssp             HHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99884 21           14678888888887  89999999999998753211223444554444444444433333

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.98  E-value=2.1e-08  Score=87.80  Aligned_cols=245  Identities=13%  Similarity=0.078  Sum_probs=133.6

Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHhccCC--CC---hHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHH----HHhhh
Q 021051           20 FLCDRLVDPTQPISERFRALFSLRNLKG--PG---PRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPAL----EAVLN   90 (318)
Q Consensus        20 ~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~~---~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L----~~~l~   90 (318)
                      .+++++.+++.  ..|......+..+..  ++   +...|.+-++++++.+|..|+++|+.+..+..++.+    .+.+.
T Consensus        72 ~v~kl~~s~d~--~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~  149 (355)
T 3tjz_B           72 AMTKLFQSNDP--TLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIV  149 (355)
T ss_dssp             HHHGGGGCCCH--HHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence            34556777764  677666666655543  23   355566666788999999999999999887665555    44444


Q ss_pred             cCCCCHHHHHHHHHHHHhcCC------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccC
Q 021051           91 DFSLHPIVRHEAAEALGAIGL------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVD  164 (318)
Q Consensus        91 ~~~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~  164 (318)
                        |.+|.||..|+-+..++-.      ...++.+.+ +..|.++.|...|...|..+..  +                  
T Consensus       150 --d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~-ll~d~n~~V~~~Al~lL~ei~~--~------------------  206 (355)
T 3tjz_B          150 --DKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQE-AASSDNIMVQYHALGLLYHVRK--N------------------  206 (355)
T ss_dssp             --CSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHH-HTTCSSHHHHHHHHHHHHHHHT--T------------------
T ss_pred             --CCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-HhcCCCccHHHHHHHHHHHHHh--h------------------
Confidence              8899999999988887642      235666777 5688899998888888887761  0                  


Q ss_pred             CCCCCCCCccHHHHHHHHcCCCc-ChHHHHHHHHHHHhCCCh-------hHHHHHHHHhCCCCHHHHHHHHHHHhccCC-
Q 021051          165 PAAPASSCSSVDMLREVLLGEEK-GMYERYAALFALRNHGGD-------EAVSAIIDSLGATSALLKHEVAYVLGQLQN-  235 (318)
Q Consensus       165 ~~~~~~~~~~~~~L~~~l~~~~~-~~~~r~~a~~~L~~~~~~-------~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-  235 (318)
                            ++.++..|+..+..... .-+.....+..++.++..       ..++.+...+++.++.|..+|+.++-.+.. 
T Consensus       207 ------d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~  280 (355)
T 3tjz_B          207 ------DRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC  280 (355)
T ss_dssp             ------CHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----
T ss_pred             ------chHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence                  01245556655544311 122344445555555432       233455566778889999999999887764 


Q ss_pred             -----cchHHHHHHHHhccCCCHHHHHHHHHHHhccC--ChhhH----HHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051          236 -----KAASAALSDVLRNVNEHPMVRHEAAEALGSIA--DDQSI----GLLKEFAKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       236 -----~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~~~~----~~L~~~l~~~~~~vr~~a~~aL~~l  297 (318)
                           ..+...|..++.++  ++++|+.|++.|..+.  .|+++    ..+..++.|++..++..|+-.|-+-
T Consensus       281 ~~~~~~~a~~~L~~fLss~--d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllkt  351 (355)
T 3tjz_B          281 SAKELAPAVSVLQLFCSSP--KAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKT  351 (355)
T ss_dssp             -------CCCTHHHHHHSS--SSSSHHHHHHCC----------------------------------------
T ss_pred             CHHHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence                 12345666777766  7889999999888874  44443    3466778888887877777666544

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.96  E-value=7.9e-08  Score=91.27  Aligned_cols=279  Identities=13%  Similarity=0.090  Sum_probs=175.6

Q ss_pred             hhHHHHHHhhc-CCCCCHHHHHHHHHHHhc---cCC--CChHHHHHHhccCCCHHHHHHHHHHHhccCCCC------cHH
Q 021051           16 EMEKFLCDRLV-DPTQPISERFRALFSLRN---LKG--PGPRDALIRATKDSSNLLAHEAAFALGQMQDAE------AIP   83 (318)
Q Consensus        16 ~~~~~L~~~L~-~~~~~~~~r~~A~~~l~~---~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~------~~~   83 (318)
                      .-+..+...++ ++..+...|..++.-+--   .|.  ......+++++.+++...|..+--.+..+....      ++.
T Consensus        35 ~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN  114 (621)
T 2vgl_A           35 KELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINN  114 (621)
T ss_dssp             HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence            35677888887 333233556555544321   132  357788888999999999999988888877642      345


Q ss_pred             HHHHhhhcCCCCHHHHHHHHHHHHhcCCCCc----HHHHHhhhc--cCCCHHHHHHHHHHHHHHHhhhccCc-----c--
Q 021051           84 ALEAVLNDFSLHPIVRHEAAEALGAIGLESN----IPLLKNSLV--SDPAQEVRETCELALERIEKLKASGS-----D--  150 (318)
Q Consensus        84 ~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~----~~~L~~~l~--~d~~~~vr~~a~~aL~~~~~~~~~~~-----~--  150 (318)
                      .|.+-+.  ++++.+|..|+++|+++..++.    .+.+.+ +.  .|++|.||+.|+.++.++-.  ...+     .  
T Consensus       115 ~l~kDl~--~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~-~l~~~d~~~~VRK~A~~al~kl~~--~~p~~~~~~~~~  189 (621)
T 2vgl_A          115 AIKNDLA--SRNPTFMGLALHCIANVGSREMAEAFAGEIPK-ILVAGDTMDSVKQSAALCLLRLYR--TSPDLVPMGDWT  189 (621)
T ss_dssp             HHHHHHH--SCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHH-HHHCSSSCHHHHHHHHHHHHHHHH--HCGGGCCCCSCH
T ss_pred             HHHHhcC--CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHH--hChhhcCchhHH
Confidence            5666667  8999999999999999998764    445566 45  79999999999999998862  1111     1  


Q ss_pred             --ccccccCCCCcccCCCCC-C---C--CC----ccHHHHH----HHHcCCCc-----------ChHHHHHHHHHHHhCC
Q 021051          151 --GSSMTERSPFMSVDPAAP-A---S--SC----SSVDMLR----EVLLGEEK-----------GMYERYAALFALRNHG  203 (318)
Q Consensus       151 --~~~~l~~~~~~~~~~~~~-~---~--~~----~~~~~L~----~~l~~~~~-----------~~~~r~~a~~~L~~~~  203 (318)
                        +..++.+.+......+.. +   .  .+    ..++.++    .++..++.           .-+.+...++.++.++
T Consensus       190 ~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~  269 (621)
T 2vgl_A          190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP  269 (621)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS
T ss_pred             HHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC
Confidence              111221111100000000 0   0  00    1233333    33322211           2356888899998886


Q ss_pred             C---hhHHH----HHHHHhC---C-C--------C--HHHHHHHHHHHhccCCc-----chHHHHHHHHhccCCCHHHHH
Q 021051          204 G---DEAVS----AIIDSLG---A-T--------S--ALLKHEVAYVLGQLQNK-----AASAALSDVLRNVNEHPMVRH  257 (318)
Q Consensus       204 ~---~~~~~----~l~~~l~---d-~--------~--~~vr~~a~~~L~~~~~~-----~~~~~L~~~l~~~~~~~~vr~  257 (318)
                      .   ++...    .+...++   + +        +  ..|..+++.++-.+...     .+...|..++.+.  ++++|+
T Consensus       270 ~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~--~~niry  347 (621)
T 2vgl_A          270 PPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHR--ETNLRY  347 (621)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCS--CHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCC--CcchHH
Confidence            4   22222    1222221   1 1        2  37778888888777642     3567777788765  899999


Q ss_pred             HHHHHHhccCCh--------hhHHHHHHhhc-CCCHHHHHHHHHHHHhchhhh
Q 021051          258 EAAEALGSIADD--------QSIGLLKEFAK-DPEPIVSQSCEVALSMLEYEQ  301 (318)
Q Consensus       258 ~a~~aL~~~~~~--------~~~~~L~~~l~-~~~~~vr~~a~~aL~~l~~~~  301 (318)
                      .++.+|..+...        .....+...++ +++..||..+...|..+....
T Consensus       348 ~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~  400 (621)
T 2vgl_A          348 LALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS  400 (621)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh
Confidence            999999998532        23455666678 899999999999988776543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=98.92  E-value=2e-08  Score=88.59  Aligned_cols=202  Identities=18%  Similarity=0.170  Sum_probs=137.2

Q ss_pred             hhhHHHHHHhhcCC---------CCCHHHHHHHHHHHhccCCC------------ChHHHHHHhccCCCHHHHHHHHHHH
Q 021051           15 PEMEKFLCDRLVDP---------TQPISERFRALFSLRNLKGP------------GPRDALIRATKDSSNLLAHEAAFAL   73 (318)
Q Consensus        15 ~~~~~~L~~~L~~~---------~~~~~~r~~A~~~l~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL   73 (318)
                      ...++.|..+|..+         ..+..++..|+++|..+...            .+++.|+++|.++++.++..|+++|
T Consensus        72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL  151 (354)
T 3nmw_A           72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL  151 (354)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence            34677788888421         11136899999999887431            2488899999999999999999999


Q ss_pred             hccCC------------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC------------CCCcHHHHHhhhccCCCH-
Q 021051           74 GQMQD------------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG------------LESNIPLLKNSLVSDPAQ-  128 (318)
Q Consensus        74 ~~~~~------------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~------------~~~~~~~L~~~l~~d~~~-  128 (318)
                      +.+..            ..+++.|+++|.. ..++.++..|+.+|.++.            ....++.|.+ ++.++++ 
T Consensus       152 ~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~-~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~-lL~~~~~~  229 (354)
T 3nmw_A          152 RNLSWRADVNSKKTLREVGSVKALMECALE-VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG-TLTYRSQT  229 (354)
T ss_dssp             HHHHTTCCHHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHH-HTTCCCSS
T ss_pred             HHHhccCCHHHHHHHHHCCCHHHHHHHHhc-CCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHH-HhccCCCc
Confidence            77643            2468999997541 578889988777776543            2457888888 4444443 


Q ss_pred             ---HHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh
Q 021051          129 ---EVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD  205 (318)
Q Consensus       129 ---~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~  205 (318)
                         .++..+..+|.++...                                     +. .++..  |..    +   .+.
T Consensus       230 ~~~~v~~~A~~aL~nLs~~-------------------------------------~a-~~~~~--~~~----i---~~~  262 (354)
T 3nmw_A          230 NTLAIIESGGGILRNVSSL-------------------------------------IA-TNEDH--RQI----L---REN  262 (354)
T ss_dssp             SCCHHHHHHHHHHHHHHHH-------------------------------------HT-TCHHH--HHH----H---HTT
T ss_pred             ccHHHHHHHHHHHHHHHhh-------------------------------------cc-CCHHH--HHH----H---HHc
Confidence               5888888888877610                                     00 00100  111    1   123


Q ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          206 EAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       206 ~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                      ..++.|.++|.+.+..++..|+.+|+.+..           ..+++.|++++.+.  ++.+|..|+.+|.++.
T Consensus       263 g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~--~~~i~~~A~~aL~nL~  333 (354)
T 3nmw_A          263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK--HKMIAMGSAAALRNLM  333 (354)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS--SHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHH
Confidence            356666666666666677777777666541           34689999999876  8899999999998874

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.88  E-value=2.9e-07  Score=87.59  Aligned_cols=202  Identities=16%  Similarity=0.127  Sum_probs=142.2

Q ss_pred             CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHHHHhhhccCCCHH---HHHHHHHHHHHHHhh
Q 021051           78 DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPLLKNSLVSDPAQE---VRETCELALERIEKL  144 (318)
Q Consensus        78 ~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~~d~~~~---vr~~a~~aL~~~~~~  144 (318)
                      ...+++.|+.++.  ++++.+|..|+++|.++..          .+.++.|..++ .+....   +|..|+.+|.++.  
T Consensus       455 eaGvIp~Lv~Ll~--S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL-~s~~~~~~~~k~~AA~ALArLl--  529 (778)
T 3opb_A          455 RTELISFLKREMH--NLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYL-ANKQDIGEPIRILGCRALTRML--  529 (778)
T ss_dssp             TTTHHHHHHHHGG--GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHT-TCC---CCHHHHHHHHHHHHHH--
T ss_pred             HCcCHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-hcCCCcchHHHHHHHHHHHHHH--
Confidence            3467899999998  7899999999999988742          35678888844 444333   8999999999986  


Q ss_pred             hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC-CCc-----------ChHHHHHHHHHHHhCCC--------
Q 021051          145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG-EEK-----------GMYERYAALFALRNHGG--------  204 (318)
Q Consensus       145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~-----------~~~~r~~a~~~L~~~~~--------  204 (318)
                      -...+..           ..+..  ..-++++.|+.+|.. +..           +...+..|+.+|+++..        
T Consensus       530 is~np~~-----------~f~~~--~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~  596 (778)
T 3opb_A          530 IFTNPGL-----------IFKKY--SALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEE  596 (778)
T ss_dssp             HTSCHHH-----------HSSSS--CSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred             hcCCHHH-----------HcCCC--ccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchH
Confidence            1111100           00000  012579999999973 221           11236778888776621        


Q ss_pred             --------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC-Ccc----------------hHHHHHHHHhccCCCHHHHHHH
Q 021051          205 --------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ-NKA----------------ASAALSDVLRNVNEHPMVRHEA  259 (318)
Q Consensus       205 --------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~-~~~----------------~~~~L~~~l~~~~~~~~vr~~a  259 (318)
                              ..+++.|.+++.+.+..+|.+|+.++..+. .+.                -++.|+.++...  +..+|.+|
T Consensus       597 ~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AA  674 (778)
T 3opb_A          597 VCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAV  674 (778)
T ss_dssp             HHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHH
Confidence                    136678888888889999999999987652 111                156788888765  99999999


Q ss_pred             HHHHhccC--Ch----------hhHHHHHHhhcC--CCHHHHHHHHHHHHhchh
Q 021051          260 AEALGSIA--DD----------QSIGLLKEFAKD--PEPIVSQSCEVALSMLEY  299 (318)
Q Consensus       260 ~~aL~~~~--~~----------~~~~~L~~~l~~--~~~~vr~~a~~aL~~l~~  299 (318)
                      +.+|+.+.  ++          +.++.+..++.+  +++.+|..++..+.++-.
T Consensus       675 agALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          675 AAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            99999973  32          467788888888  899999999999998874

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.84  E-value=2.5e-07  Score=88.01  Aligned_cols=259  Identities=11%  Similarity=0.057  Sum_probs=164.3

Q ss_pred             hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC---------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-------
Q 021051           15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG---------PGPRDALIRATKDSSNLLAHEAAFALGQMQD-------   78 (318)
Q Consensus        15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------   78 (318)
                      +.-++.|...+++.    .+|..|+-.|.+++.         .+..+.+.++|.+++...|..|++.|+.+..       
T Consensus       295 ~~~~~~L~~~l~~~----~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~  370 (778)
T 3opb_A          295 ENYLQLLERSLNVE----DVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIM  370 (778)
T ss_dssp             HHHHHHHHHHTTSG----GGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred             HhHHHHHHHHhccH----HHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHH
Confidence            33455555566542    456666666655432         1234444555555554456777777765542       


Q ss_pred             ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------------------------------------------
Q 021051           79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG--------------------------------------------  110 (318)
Q Consensus        79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--------------------------------------------  110 (318)
                          ..++..|++++++ ..+..+..+++..|.++.                                            
T Consensus       371 L~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~  449 (778)
T 3opb_A          371 IRSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN  449 (778)
T ss_dssp             HHHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHH
Confidence                1335666666662 134455556665555432                                            


Q ss_pred             -----CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCC
Q 021051          111 -----LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGE  185 (318)
Q Consensus       111 -----~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~  185 (318)
                           +.++++.|.. +.+.+++.+|..++++|.++........   .+               ....+++.|+.++.+.
T Consensus       450 ~~~l~eaGvIp~Lv~-Ll~S~s~~~re~A~~aL~nLS~d~~~R~---~l---------------vqqGal~~LL~lL~s~  510 (778)
T 3opb_A          450 EKYILRTELISFLKR-EMHNLSPNCKQQVVRIIYNITRSKNFIP---QL---------------AQQGAVKIILEYLANK  510 (778)
T ss_dssp             HHHTTTTTHHHHHHH-HGGGSCHHHHHHHHHHHHHHHTSGGGHH---HH---------------HHTTHHHHHHHHTTCC
T ss_pred             HHHHHHCcCHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCHHHHH---HH---------------HHCCCHHHHHHHHhcC
Confidence                 2335677777 5567889999999999998871100000   00               0134689999999876


Q ss_pred             CcC-hHHHHHHHHHHHhCC---C----------hhHHHHHHHHhCC-CCH-------------HHHHHHHHHHhccCC--
Q 021051          186 EKG-MYERYAALFALRNHG---G----------DEAVSAIIDSLGA-TSA-------------LLKHEVAYVLGQLQN--  235 (318)
Q Consensus       186 ~~~-~~~r~~a~~~L~~~~---~----------~~~~~~l~~~l~d-~~~-------------~vr~~a~~~L~~~~~--  235 (318)
                      ... ...|..|+.+|.++.   +          .++++.|.++|.. +..             .-+.+|+.+|+.+..  
T Consensus       511 ~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~  590 (778)
T 3opb_A          511 QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSE  590 (778)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCC
T ss_pred             CCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCC
Confidence            543 124888999988752   1          2788999999872 211             226778888766531  


Q ss_pred             --------------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC-Chh----------------hHHHHHHhhcCCCH
Q 021051          236 --------------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA-DDQ----------------SIGLLKEFAKDPEP  284 (318)
Q Consensus       236 --------------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-~~~----------------~~~~L~~~l~~~~~  284 (318)
                                    ..+++.|..++.+.  +..||.+|++.+.++. ++.                -++.|+.+++.++.
T Consensus       591 ~n~~E~~r~~Ii~~~ga~~~L~~LL~s~--n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~  668 (778)
T 3opb_A          591 TSDGEEVCKHIVSTKVYWSTIENLMLDE--NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDV  668 (778)
T ss_dssp             SHHHHHHHHHHHHSHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCH
T ss_pred             cccchHHHHHHHHhcCHHHHHHHHHhCC--CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCH
Confidence                          13578888888876  8999999999998863 221                16688899999999


Q ss_pred             HHHHHHHHHHHhchh
Q 021051          285 IVSQSCEVALSMLEY  299 (318)
Q Consensus       285 ~vr~~a~~aL~~l~~  299 (318)
                      .+|.+|.+||.++..
T Consensus       669 ~~r~AAagALAnLts  683 (778)
T 3opb_A          669 ESQRAVAAIFANIAT  683 (778)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999853

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.80  E-value=7.1e-08  Score=82.86  Aligned_cols=136  Identities=18%  Similarity=0.179  Sum_probs=96.0

Q ss_pred             CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCC-CcChHH
Q 021051          113 SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGE-EKGMYE  191 (318)
Q Consensus       113 ~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~~~~  191 (318)
                      +.++.|...+++++++.||..|+++|+.+..  +. +.....              +....+++.|+.+|.++ +.  .+
T Consensus        81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~--~n-~~~~~~--------------vv~~g~l~~Ll~LL~~~~~~--~v  141 (296)
T 1xqr_A           81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQ--NV-AAIQEQ--------------VLGLGALRKLLRLLDRDACD--TV  141 (296)
T ss_dssp             THHHHHHHTTTTCSSHHHHHHHHHHHHHHHT--TC-HHHHHH--------------HHHTTHHHHHHHHHHHCSCH--HH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--CC-HHHHHH--------------HHHCCCHHHHHHHHccCCCH--HH
Confidence            4567777723468899999999999999861  00 000000              00124788999999743 33  35


Q ss_pred             HHHHHHHHHhCC--C---------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC-----------CcchHHHHHHHHhcc
Q 021051          192 RYAALFALRNHG--G---------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ-----------NKAASAALSDVLRNV  249 (318)
Q Consensus       192 r~~a~~~L~~~~--~---------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~~~  249 (318)
                      |..|+++|+++.  .         ...++.|..+++++++.++..|+.+|+.+.           +..+++.|+.++.++
T Consensus       142 ~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~  221 (296)
T 1xqr_A          142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE  221 (296)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC
Confidence            899999998873  2         246677888888888888888888888763           135678888888876


Q ss_pred             CCCHHHHHHHHHHHhccCCh
Q 021051          250 NEHPMVRHEAAEALGSIADD  269 (318)
Q Consensus       250 ~~~~~vr~~a~~aL~~~~~~  269 (318)
                        ++.+|..++.+|+.+-..
T Consensus       222 --d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          222 --HSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             --CSTHHHHHHHHHHHHHTT
T ss_pred             --ChhHHHHHHHHHHHHHhC
Confidence              788888888888888765

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.76  E-value=1.7e-07  Score=81.97  Aligned_cols=223  Identities=18%  Similarity=0.158  Sum_probs=149.3

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHhccCCC--C---cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHH----HHhh
Q 021051           51 RDALIRATKDSSNLLAHEAAFALGQMQDA--E---AIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPL----LKNS  121 (318)
Q Consensus        51 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--~---~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~----L~~~  121 (318)
                      ...+.+++.++|..+|...-..+..+...  .   ++..|.+=+.  ++++.+|..|+++|+++.+++.++.    +.+ 
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~--~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~-  146 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMT--GKEDSYRGPAVRALCQITDSTMLQAIERYMKQ-  146 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHH--SSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC--CCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHH-
Confidence            34456688999998887776666554432  2   3566667777  8999999999999999998876554    445 


Q ss_pred             hccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHh
Q 021051          122 LVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRN  201 (318)
Q Consensus       122 l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~  201 (318)
                      ...|++|.||+.|+.+..++-  . ..+++                   -+..++.+.+++.+.++.+  ...|+.+|..
T Consensus       147 ~L~d~~pyVRk~A~l~~~kL~--~-~~pe~-------------------v~~~~~~l~~ll~d~n~~V--~~~Al~lL~e  202 (355)
T 3tjz_B          147 AIVDKVPSVSSSALVSSLHLL--K-CSFDV-------------------VKRWVNEAQEAASSDNIMV--QYHALGLLYH  202 (355)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHT--T-TCHHH-------------------HHTTHHHHHHHTTCSSHHH--HHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHh--c-cCHHH-------------------HHHHHHHHHHHhcCCCccH--HHHHHHHHHH
Confidence            457999999999999998875  0 01100                   0235778888888877654  7888888877


Q ss_pred             CCC--hhHHHHHHHHhCCC---CHHHHHHHHHHHhccCCc-------chHHHHHHHHhccCCCHHHHHHHHHHHhccCCh
Q 021051          202 HGG--DEAVSAIIDSLGAT---SALLKHEVAYVLGQLQNK-------AASAALSDVLRNVNEHPMVRHEAAEALGSIADD  269 (318)
Q Consensus       202 ~~~--~~~~~~l~~~l~d~---~~~vr~~a~~~L~~~~~~-------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~  269 (318)
                      +..  ..++..++..+...   ++......++.++.+...       ...+.|...+++.  ++.|.++|++++..+...
T Consensus       203 i~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~--~~aVvyEa~k~I~~l~~~  280 (355)
T 3tjz_B          203 VRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNK--HEMVVYEAASAIVNLPGC  280 (355)
T ss_dssp             HHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCS--SHHHHHHHHHHHTC----
T ss_pred             HHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhccCC
Confidence            753  44667777766442   688888888988887543       2345566666766  899999999999998652


Q ss_pred             ------hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          270 ------QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       270 ------~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                            .++..|..++.++++.+|..|...|..+.....
T Consensus       281 ~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P  319 (355)
T 3tjz_B          281 SAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP  319 (355)
T ss_dssp             -------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred             CHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence                  245567777888888999999998888766544

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.74  E-value=1.5e-07  Score=78.82  Aligned_cols=172  Identities=12%  Similarity=0.140  Sum_probs=119.9

Q ss_pred             HHHHhhhcCCCCHHHHHHHHHHHHh-c--CC-------C---CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcc
Q 021051           84 ALEAVLNDFSLHPIVRHEAAEALGA-I--GL-------E---SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSD  150 (318)
Q Consensus        84 ~L~~~l~~~~~~~~vR~~a~~~L~~-~--~~-------~---~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~  150 (318)
                      .+.+.+.  +++|.-|..|+..|+. +  +.       .   +.+..|.+.+.+|++..||..++.+++.+...... +.
T Consensus        20 ~f~~~l~--s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~   96 (249)
T 2qk1_A           20 DFQERIT--SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PG   96 (249)
T ss_dssp             THHHHHT--CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TT
T ss_pred             hHHHHhh--cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-cc
Confidence            4556666  7888888888887777 5  21       1   13445666444799999999999999988721110 11


Q ss_pred             ccccccCCCCc-ccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHH---h-C------C-ChhHHHHHHHHhCCC
Q 021051          151 GSSMTERSPFM-SVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALR---N-H------G-GDEAVSAIIDSLGAT  218 (318)
Q Consensus       151 ~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~---~-~------~-~~~~~~~l~~~l~d~  218 (318)
                               +. ..       ....++.+++.+.++...+  |..+..++-   . .      + -+..++.|...++++
T Consensus        97 ---------f~~~y-------~~~llp~ll~~l~dkk~~V--~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k  158 (249)
T 2qk1_A           97 ---------FSKDY-------VSLVFTPLLDRTKEKKPSV--IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK  158 (249)
T ss_dssp             ---------SCHHH-------HHHHHHHHHHGGGCCCHHH--HHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS
T ss_pred             ---------ccHHH-------HHHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC
Confidence                     11 00       0235788999998877654  665544443   2 3      2 336788888999999


Q ss_pred             CHHHHHHHHHHHhcc----C----------CcchHHHHHHHHhccCCCHHHHHHHHHHHhc----cCChhhHHHHHHh
Q 021051          219 SALLKHEVAYVLGQL----Q----------NKAASAALSDVLRNVNEHPMVRHEAAEALGS----IADDQSIGLLKEF  278 (318)
Q Consensus       219 ~~~vr~~a~~~L~~~----~----------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~----~~~~~~~~~L~~~  278 (318)
                      +|.+|..++.+|+..    +          .+..+|.|.+.+.|.  ++.||.+|..+|+.    +|.....+++..+
T Consensus       159 ~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L  234 (249)
T 2qk1_A          159 TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT--QPAIRTIGFESFAILIKIFGMNTFVKTLEHL  234 (249)
T ss_dssp             SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            999999999998864    2          256788899999887  89999999999999    4666666666665

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.72  E-value=2.4e-07  Score=77.28  Aligned_cols=163  Identities=15%  Similarity=0.125  Sum_probs=123.9

Q ss_pred             HHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHc-CCCcChHHHHHH
Q 021051          117 LLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLL-GEEKGMYERYAA  195 (318)
Q Consensus       117 ~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~~~~r~~a  195 (318)
                      .+.+ ..+++++..|+.++..|..+..   +.+.+.    ...           -.+.++.|...+. +++..  +|..|
T Consensus        19 ~l~~-~l~s~~w~~R~~a~~~L~~l~~---~~~~~~----~~~-----------~~~i~~~L~~~l~kd~~~~--V~~~a   77 (242)
T 2qk2_A           19 DFYD-KLEEKKWTLRKESLEVLEKLLT---DHPKLE----NGE-----------YGALVSALKKVITKDSNVV--LVAMA   77 (242)
T ss_dssp             THHH-HHTCSSHHHHHHHHHHHHHHHH---HCSSBC----CCC-----------CHHHHHHHHHHHHHCSCHH--HHHHH
T ss_pred             HHHh-hhccCCHHHHHHHHHHHHHHHc---cCCCCC----CCC-----------HHHHHHHHHHHhccCCCHH--HHHHH
Confidence            4566 4579999999999999998861   100000    000           1246788888884 76665  59999


Q ss_pred             HHHHHhCCC----------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC----cchHHHHHHHHhccCCCHHHHHHHHH
Q 021051          196 LFALRNHGG----------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN----KAASAALSDVLRNVNEHPMVRHEAAE  261 (318)
Q Consensus       196 ~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~----~~~~~~L~~~l~~~~~~~~vr~~a~~  261 (318)
                      +.+++.+..          ...++.|.+.+.|+.+.+|..+..+|..+..    ...++.|...+.+.  +|.+|..++.
T Consensus        78 ~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~  155 (242)
T 2qk2_A           78 GKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETAL  155 (242)
T ss_dssp             HHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHH
Confidence            999988742          3567888888999999999999999987643    35678888888876  8999999999


Q ss_pred             HHhcc-CC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          262 ALGSI-AD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       262 aL~~~-~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      .|+.+ ..           +..++.|..++.|+++.||..|..+++.+...-.
T Consensus       156 ~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          156 FIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             HHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence            99984 21           2467888899999999999999999998875544

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.64  E-value=1.6e-06  Score=67.11  Aligned_cols=196  Identities=17%  Similarity=0.138  Sum_probs=119.5

Q ss_pred             CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--CCCcHH----HHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccc
Q 021051           80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIG--LESNIP----LLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSS  153 (318)
Q Consensus        80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--~~~~~~----~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~  153 (318)
                      ..+..+..+|.  |+-|.|+.+|+..+..+.  .++.+.    .|.-++.++..-..-...+.++|.+.. .  .+++  
T Consensus        32 ~~l~~lI~~LD--DDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~-i--~Pe~--  104 (253)
T 2db0_A           32 SVLKKLIELLD--DDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-E--KPEL--  104 (253)
T ss_dssp             HHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-H--CHHH--
T ss_pred             HHHHHHHHHhc--cHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH-h--CHHH--
Confidence            44555555555  555666666666665543  222221    222222345555555666666666551 0  0000  


Q ss_pred             cccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC--Ch----hHHHHHHHHhCCCCHHHHHHHH
Q 021051          154 MTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG--GD----EAVSAIIDSLGATSALLKHEVA  227 (318)
Q Consensus       154 ~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--~~----~~~~~l~~~l~d~~~~vr~~a~  227 (318)
                               .        ...+|.+++-++-.++.+  |....++|+.+.  ++    .....+...+.+++..-|..|+
T Consensus       105 ---------v--------~~vVp~lfanyrigd~ki--kIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aL  165 (253)
T 2db0_A          105 ---------V--------KSMIPVLFANYRIGDEKT--KINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTAL  165 (253)
T ss_dssp             ---------H--------HHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHH
T ss_pred             ---------H--------HhhHHHHHHHHhcCCccc--eecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence                     0        124566666666665554  777777777663  22    3445566677888888888889


Q ss_pred             HHHhccCCcc------hHHHHHHHHhccCCCHHHHHHHHHHHhccC--ChhhHHHHH---HhhcCCCHHHHHHHHHHHHh
Q 021051          228 YVLGQLQNKA------ASAALSDVLRNVNEHPMVRHEAAEALGSIA--DDQSIGLLK---EFAKDPEPIVSQSCEVALSM  296 (318)
Q Consensus       228 ~~L~~~~~~~------~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~~~~~~L~---~~l~~~~~~vr~~a~~aL~~  296 (318)
                      +.++.+|...      -+|.|..++.|.  |..||..|+++|+.+.  .+..-+.+.   +-++|+...|......+|++
T Consensus       166 nFi~alGen~~~yv~PfLprL~aLL~D~--deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          166 NFIEAMGENSFKYVNPFLPRIINLLHDG--DEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHHTCCTTTHHHHGGGHHHHHGGGGCS--SHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCccccCcchHHHHHHHcCc--chhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            9888888643      367778888877  8899999999999885  344333333   34677888899999999988


Q ss_pred             chhhhcc
Q 021051          297 LEYEQLE  303 (318)
Q Consensus       297 l~~~~~~  303 (318)
                      +.--+.+
T Consensus       244 l~l~e~~  250 (253)
T 2db0_A          244 LLLLEGH  250 (253)
T ss_dssp             HHHC---
T ss_pred             HHHHhcc
Confidence            8655543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.57  E-value=7.6e-07  Score=68.96  Aligned_cols=88  Identities=16%  Similarity=0.237  Sum_probs=45.0

Q ss_pred             HHHHHHHHcCCCcChHHHHHHHHHHHhCCC------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC--CcchHHHHHHHH
Q 021051          175 VDMLREVLLGEEKGMYERYAALFALRNHGG------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ--NKAASAALSDVL  246 (318)
Q Consensus       175 ~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l  246 (318)
                      +..+..++.+++...  |..|++-++.+|.      ...+|.|..+|.|.+.-||..++..|+++.  ++...+.+...+
T Consensus       146 ~rdi~smltskd~~D--kl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl  223 (253)
T 2db0_A          146 VRDFMSMLSSKNRED--KLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRL  223 (253)
T ss_dssp             HHHHHHHTSCSSHHH--HHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCChHH--HHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            444555555444332  5555555555543      335555666666666666666666666553  233333333333


Q ss_pred             ---hccCCCHHHHHHHHHHHhcc
Q 021051          247 ---RNVNEHPMVRHEAAEALGSI  266 (318)
Q Consensus       247 ---~~~~~~~~vr~~a~~aL~~~  266 (318)
                         .|.  +..|.....++|+++
T Consensus       224 ~e~~D~--S~lv~~~V~egL~rl  244 (253)
T 2db0_A          224 EELNDT--SSLVNKTVKEGISRL  244 (253)
T ss_dssp             HHCCCS--CHHHHHHHHHHHHHH
T ss_pred             HHhcCc--HHHHHHHHHHHHHHH
Confidence               232  455555555555554

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=98.53  E-value=1.5e-05  Score=80.11  Aligned_cols=238  Identities=13%  Similarity=0.086  Sum_probs=163.2

Q ss_pred             ChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc--CCCCcHHHHHhhhccC-
Q 021051           49 GPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAI--GLESNIPLLKNSLVSD-  125 (318)
Q Consensus        49 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~--~~~~~~~~L~~~l~~d-  125 (318)
                      +.+..+.+.+.+ .+..|...+.+|...|...++..+.+.+.+..-+......++..+..+  .+++.+..+.. +.+. 
T Consensus       326 e~L~~l~~~~~~-~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~ea~~~l~~~~~~~~Pt~e~l~~~~~-l~~~~  403 (1056)
T 1lsh_A          326 GVLQSIWHKLHQ-QKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVASTLSNQQATRESLSYARE-LLNTS  403 (1056)
T ss_dssp             HHHHHHHHHHTT-SHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCHHHHHHHHH-HHTCH
T ss_pred             HHHHHHHHHHhc-cHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHhhccCCCCHHHHHHHHH-HHhCc
Confidence            444455554443 367888899999999999999999999994322332222233333333  34456676766 4333 


Q ss_pred             ---CCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC
Q 021051          126 ---PAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH  202 (318)
Q Consensus       126 ---~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~  202 (318)
                         +++.+|..+..+++.+.. ....        .........     -+.....|.+.+...+.  ..+..++++||++
T Consensus       404 ~~~~~~~l~~ta~La~gslV~-k~c~--------~~~~c~~~~-----v~~i~~~l~~~~~~~~~--~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          404 FIRNRPILRKTAVLGYGSLVF-RYCA--------NTVSCPDEL-----LQPLHDLLSQSSDRAKE--EEIVLALKALGNA  467 (1056)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHH-HHHT--------TCSSCCGGG-----THHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHHH-HHhc--------cCCCCCHHH-----HHHHHHHHHHHHhcCCh--HHHHHHHHHhhcc
Confidence               478899999999988761 1100        000000000     02234555566655543  3589999999999


Q ss_pred             CChhHHHHHHHHhCC-------CCHHHHHHHHHHHhccCCc---chHHHHHHHHhccCCCHHHHHHHHHHHhcc-CChhh
Q 021051          203 GGDEAVSAIIDSLGA-------TSALLKHEVAYVLGQLQNK---AASAALSDVLRNVNEHPMVRHEAAEALGSI-ADDQS  271 (318)
Q Consensus       203 ~~~~~~~~l~~~l~d-------~~~~vr~~a~~~L~~~~~~---~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~-~~~~~  271 (318)
                      |.+..++.|.+++..       ....+|..|+.+|..+...   .+.+.+.+...|..+++++|.+|+..|.+. .+...
T Consensus       468 g~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~~  547 (1056)
T 1lsh_A          468 GQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVAL  547 (1056)
T ss_dssp             TCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHHH
T ss_pred             CChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCHHH
Confidence            999999999888742       2467889999999998754   478899999988888999999999999886 44556


Q ss_pred             HHHHHHhhc-CCCHHHHHHHHHHHHhchhhhcch
Q 021051          272 IGLLKEFAK-DPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       272 ~~~L~~~l~-~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      +..+...+. +++.+|+......|..+...+...
T Consensus       548 l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~  581 (1056)
T 1lsh_A          548 VSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE  581 (1056)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence            777777654 588999988888888887766544

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.46  E-value=1.3e-06  Score=73.11  Aligned_cols=180  Identities=16%  Similarity=0.092  Sum_probs=110.7

Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHhc-cC-C-C----------ChHHHHHHhc-cCCCHHHHHHHHHHHhccCCCCcHHHH
Q 021051           20 FLCDRLVDPTQPISERFRALFSLRN-LK-G-P----------GPRDALIRAT-KDSSNLLAHEAAFALGQMQDAEAIPAL   85 (318)
Q Consensus        20 ~L~~~L~~~~~~~~~r~~A~~~l~~-~~-~-~----------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L   85 (318)
                      .+.+.+.+++  |..|..|+..+.. +. + +          +.+..|.+.+ +|.+..+|..|+.+++.+..       
T Consensus        20 ~f~~~l~s~~--w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~-------   90 (249)
T 2qk1_A           20 DFQERITSSK--WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD-------   90 (249)
T ss_dssp             THHHHHTCSS--HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH-------
T ss_pred             hHHHHhhcCC--HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-------
Confidence            4556666654  7888888888777 52 1 1          1233444444 45555555555555554321       


Q ss_pred             HHhhhcCCCC-HHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccC
Q 021051           86 EAVLNDFSLH-PIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVD  164 (318)
Q Consensus        86 ~~~l~~~~~~-~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~  164 (318)
                        -+....-. +..             ...+|.+.. ..+|+.+.|+..+..++..+..  ..                +
T Consensus        91 --~l~~~~f~~~y~-------------~~llp~ll~-~l~dkk~~V~~aa~~al~~i~~--~~----------------~  136 (249)
T 2qk1_A           91 --KLKTPGFSKDYV-------------SLVFTPLLD-RTKEKKPSVIEAIRKALLTICK--YY----------------D  136 (249)
T ss_dssp             --HHCTTTSCHHHH-------------HHHHHHHHH-GGGCCCHHHHHHHHHHHHHHHH--HS----------------C
T ss_pred             --hcccccccHHHH-------------HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH--Hc----------------c
Confidence              11100111 111             024566667 4478899999999998887761  11                0


Q ss_pred             CCCCCC-CCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----C----------ChhHHHHHHHHhCCCCHHHHHHHHHH
Q 021051          165 PAAPAS-SCSSVDMLREVLLGEEKGMYERYAALFALRNH----G----------GDEAVSAIIDSLGATSALLKHEVAYV  229 (318)
Q Consensus       165 ~~~~~~-~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~----------~~~~~~~l~~~l~d~~~~vr~~a~~~  229 (318)
                      +..... -+..++.|+..+.++++.  +|..++..++..    +          .+..++.+.+++.|+++.||..|..+
T Consensus       137 ~~~~~~~l~~ll~~l~~~l~~k~~~--vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~  214 (249)
T 2qk1_A          137 PLASSGRNEDMLKDILEHMKHKTPQ--IRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFES  214 (249)
T ss_dssp             TTCTTCTTHHHHHHHHHHTTCSSHH--HHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             ccccCCcHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            000000 123678899999888775  599998888765    3          25677888899999999999999999


Q ss_pred             Hhc----cCCcchHHHHHH
Q 021051          230 LGQ----LQNKAASAALSD  244 (318)
Q Consensus       230 L~~----~~~~~~~~~L~~  244 (318)
                      ++.    +|+....+.+-.
T Consensus       215 l~~i~~~vG~~~~~p~l~~  233 (249)
T 2qk1_A          215 FAILIKIFGMNTFVKTLEH  233 (249)
T ss_dssp             HHHHHHHHCSGGGHHHHHH
T ss_pred             HHHHHHHhCHHHHHHHHHH
Confidence            998    455555555544

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.36  E-value=7.5e-06  Score=66.04  Aligned_cols=165  Identities=16%  Similarity=0.170  Sum_probs=117.0

Q ss_pred             CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHH
Q 021051          113 SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYER  192 (318)
Q Consensus       113 ~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r  192 (318)
                      +.+..|.+ +++|+|+.++..+..++..+-.  ...+....       ..        -++.++.+++++.+++..+  -
T Consensus        33 ~~l~~L~~-LL~dkD~~vk~raL~~LeellK--~~~~~l~~-------~~--------~e~~Ld~iI~llk~~dEkv--a   92 (265)
T 3b2a_A           33 RALFLILE-LAGEDDETTRLRAFVALGEILK--RADSDLRM-------MV--------LERHLDVFINALSQENEKV--T   92 (265)
T ss_dssp             HHHHHHHH-HTTSSCHHHHHHHHHHHHHHHH--HSCHHHHH-------HH--------HHHHHHHHHHTCCSTTHHH--H
T ss_pred             hHHHHHHH-HHhccchHHHHHHHHHHHHHHH--hccccccH-------HH--------HHHHHHHHHHHHhccchhH--H
Confidence            45666666 5577777777777777766541  00000000       00        0346788898998888765  6


Q ss_pred             HHHHHHHHhC--C---Ch----hHHHHHHHHhCCCCHHHHHHHHHHHhccCC----cchHHHHHHHHhccCCCHHHHHHH
Q 021051          193 YAALFALRNH--G---GD----EAVSAIIDSLGATSALLKHEVAYVLGQLQN----KAASAALSDVLRNVNEHPMVRHEA  259 (318)
Q Consensus       193 ~~a~~~L~~~--~---~~----~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~----~~~~~~L~~~l~~~~~~~~vr~~a  259 (318)
                      ..|+.+++.+  +   ++    .....+...+.++++-++.+++..+|.++.    +....+|..++.+.  |+.++.++
T Consensus        93 l~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Sk--d~~vK~ag  170 (265)
T 3b2a_A           93 IKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSP--DLYTKVAG  170 (265)
T ss_dssp             HHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCS--SHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCC--ChhHHHHH
Confidence            6677777765  1   23    334455556678999999999999999863    46889999999766  99999999


Q ss_pred             HHHHhccCC--------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051          260 AEALGSIAD--------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEY  299 (318)
Q Consensus       260 ~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~  299 (318)
                      +.++-+++.        ...+..+..+++.+|++++..|..+|..+-.
T Consensus       171 l~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils  218 (265)
T 3b2a_A          171 FCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALS  218 (265)
T ss_dssp             HHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            999999863        2456677788999999999999999987643

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.21  E-value=8.2e-06  Score=67.20  Aligned_cols=30  Identities=20%  Similarity=0.146  Sum_probs=23.2

Q ss_pred             CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051          112 ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus       112 ~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      ...+|.|.+ ++..+++.++..|+++|.++.
T Consensus        51 ~G~Ip~LV~-lL~s~~~~vq~~Aa~aL~nLa   80 (233)
T 3tt9_A           51 LRGILKLLQ-LLKVQNEDVQRAVCGALRNLV   80 (233)
T ss_dssp             TTHHHHHHH-GGGCCCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence            356788888 556778888888888888887

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.13  E-value=2.6e-05  Score=62.93  Aligned_cols=124  Identities=17%  Similarity=0.186  Sum_probs=66.9

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC---
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA---   79 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---   79 (318)
                      +++.+..|..+|.++++  .++.+++.+++++-.           ++..+.++.++.++|..+-..|+++|+.+=..   
T Consensus        31 ~e~~l~~L~~LL~dkD~--~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL  108 (265)
T 3b2a_A           31 DKRALFLILELAGEDDE--TTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM  108 (265)
T ss_dssp             CHHHHHHHHHHTTSSCH--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred             chhHHHHHHHHHhccch--HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence            34455556666665554  666666666655422           23455555555666666666666666543210   


Q ss_pred             ------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           80 ------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        80 ------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                            .....|...++  .+++.++..++..++.+..    +.....+.+ +.+++++.++.++..++-.++
T Consensus       109 ~~~~y~Kl~~aL~dlik--~~~~il~~eaae~Lgklkv~~~~~~V~~~l~s-Ll~Skd~~vK~agl~~L~eia  178 (265)
T 3b2a_A          109 GSKTFLKAAKTLVSLLE--SPDDMMRIETIDVLSKLQPLEDSKLVRTYINE-LVVSPDLYTKVAGFCLFLNML  178 (265)
T ss_dssp             CHHHHHHHHHHHHHHTT--SCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhc--CCCchHHHHHHHHhCcCCcccchHHHHHHHHH-HHhCCChhHHHHHHHHHHHhh
Confidence                  12344444555  5666666666666666542    223444555 335666666666666666555

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.07  E-value=3.6e-05  Score=62.49  Aligned_cols=124  Identities=15%  Similarity=0.130  Sum_probs=94.6

Q ss_pred             HHHHHHHcCCCcChHHHHHHHHHHHhCC-ChhHHHHHHH-HhCCCCHHHHHHHHHHHhccC----CcchHHHHHHHHhcc
Q 021051          176 DMLREVLLGEEKGMYERYAALFALRNHG-GDEAVSAIID-SLGATSALLKHEVAYVLGQLQ----NKAASAALSDVLRNV  249 (318)
Q Consensus       176 ~~L~~~l~~~~~~~~~r~~a~~~L~~~~-~~~~~~~l~~-~l~d~~~~vr~~a~~~L~~~~----~~~~~~~L~~~l~~~  249 (318)
                      +....+..++..  .+|..|+.+|++.. ..+.++.+.. +-.|++|.||..+..+++.+.    ....++.+.....|+
T Consensus        74 ~la~~L~~~~~d--eVR~~Av~lLg~~~~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~  151 (240)
T 3l9t_A           74 KLAFLAYQSDVY--QVRMYAVFLFGYLSKDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSS  151 (240)
T ss_dssp             HHHHHHHTCSSH--HHHHHHHHHHHHTTTSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCS
T ss_pred             HHHHHHHhCcch--HHHHHHHHHHHhccCcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence            333344445554  46999999999863 3456677776 567899999999999998764    234688889888887


Q ss_pred             CCCHHHHHHHHHHHhcc-------CCh-hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcc
Q 021051          250 NEHPMVRHEAAEALGSI-------ADD-QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLE  303 (318)
Q Consensus       250 ~~~~~vr~~a~~aL~~~-------~~~-~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~  303 (318)
                        ++.||+.|++.+...       .++ .+++.|..+..|++.+||+++.++|.-+.....+
T Consensus       152 --n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd  211 (240)
T 3l9t_A          152 --NLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD  211 (240)
T ss_dssp             --SHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             --CHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence              999999999997431       122 3677788888999999999999999999877664

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.84  E-value=0.00069  Score=66.71  Aligned_cols=254  Identities=17%  Similarity=0.168  Sum_probs=163.4

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhcc-CCC--------ChHHHHHHhccCCCHHHHHHHHHHHhccCCC-----C---
Q 021051           18 EKFLCDRLVDPTQPISERFRALFSLRNL-KGP--------GPRDALIRATKDSSNLLAHEAAFALGQMQDA-----E---   80 (318)
Q Consensus        18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~-~~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~---   80 (318)
                      ++.+.+.+...+.  ..+..+...+..+ ...        ...+.|.+.+.+....  ..|+.+++.+...     .   
T Consensus        16 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~   91 (986)
T 2iw3_A           16 LEELFQKLSVATA--DNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP   91 (986)
T ss_dssp             HHHHHHHHTTCCT--TTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH
T ss_pred             HHHHHhhccccch--hHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc
Confidence            4445555665433  3445555444443 211        3677777777766433  7777777665521     2   


Q ss_pred             ----cHHHHHHhhhcCCCCHHHHHHHHHHHHhc---CCCC----cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCc
Q 021051           81 ----AIPALEAVLNDFSLHPIVRHEAAEALGAI---GLES----NIPLLKNSLVSDPAQEVRETCELALERIEKLKASGS  149 (318)
Q Consensus        81 ----~~~~L~~~l~~~~~~~~vR~~a~~~L~~~---~~~~----~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~  149 (318)
                          .++.++..+.  |+...||.+|..++..+   -++.    .+|.|...+.+...+..+..+...+.++.+  .+..
T Consensus        92 ~~~~~~~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~--~~~~  167 (986)
T 2iw3_A           92 YIVQLVPAICTNAG--NKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVD--AAKD  167 (986)
T ss_dssp             HHHTTHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HSHH
T ss_pred             chHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH--HhHH
Confidence                2455566666  88999998887766543   2333    456777756555579999999999998871  1111


Q ss_pred             cccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC----C---hhHHHHHHHHhCCCCHHH
Q 021051          150 DGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG----G---DEAVSAIIDSLGATSALL  222 (318)
Q Consensus       150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~----~---~~~~~~l~~~l~d~~~~v  222 (318)
                      .+...+                ++.+|.+.+.+.|..+++  ..+|..++..++    +   ...+|.|++++.+++.  
T Consensus       168 ~~~~~~----------------~~~~p~~~~~~~d~k~~v--~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~--  227 (986)
T 2iw3_A          168 QVALRM----------------PELIPVLSETMWDTKKEV--KAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE--  227 (986)
T ss_dssp             HHHHHH----------------HHHHHHHHHHTTCSSHHH--HHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--
T ss_pred             HHHHhc----------------cchhcchHhhcccCcHHH--HHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--
Confidence            111111                346788888888888775  788887777653    2   4678999999988854  


Q ss_pred             HHHHHHHHhccCC-----c----chHHHHHHHHhccCCCHHHHHHHHHHHhccC----Ch--------hhHHHHHHhhcC
Q 021051          223 KHEVAYVLGQLQN-----K----AASAALSDVLRNVNEHPMVRHEAAEALGSIA----DD--------QSIGLLKEFAKD  281 (318)
Q Consensus       223 r~~a~~~L~~~~~-----~----~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----~~--------~~~~~L~~~l~~  281 (318)
                      -.+++..|+.-.-     .    -.+|.|...+.+.  ...+++.++-.+.++.    ++        ..+|.+.+....
T Consensus       228 ~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~--~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~  305 (986)
T 2iw3_A          228 VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNER--ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFAT  305 (986)
T ss_dssp             HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTT
T ss_pred             hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccC--cchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhc
Confidence            5567888876432     1    2457777777765  6777777777777764    22        345556665554


Q ss_pred             -CCHHHHHHHHHHHHhchhhh
Q 021051          282 -PEPIVSQSCEVALSMLEYEQ  301 (318)
Q Consensus       282 -~~~~vr~~a~~aL~~l~~~~  301 (318)
                       .+|++|..|..|+..+..-.
T Consensus       306 ~~~pe~r~~~~~a~~~l~~~~  326 (986)
T 2iw3_A          306 IADPEAREVTLRALKTLRRVG  326 (986)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhh
Confidence             78999999999999885543

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.80  E-value=0.00056  Score=62.29  Aligned_cols=238  Identities=13%  Similarity=0.101  Sum_probs=145.7

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCC
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG--PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSL   94 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~   94 (318)
                      .-+.|..-|-|+.  |++|.-|+-.|+++-.  ....... .. .+.+-.+|...+-+|-++++         ...+ .-
T Consensus       175 fcE~L~~DLFdp~--WEiRHGAALGLREILR~hG~GAGR~-~~-~N~DLAvRLLCVLALDRFGD---------YVSD-qV  240 (800)
T 3oc3_A          175 FFEQISDNLLSYE--WYKRHGAFLAFAAMFSEIDNGGDIQ-IR-VDSKLFSKIYEILVTDKFND---------FVDD-RT  240 (800)
T ss_dssp             TTHHHHHHTTCSS--HHHHHHHHHHHHHHHHHCC----CC-CC-CCTTHHHHHHHHHHHBCCBB---------CSSS-SC
T ss_pred             HHHHHHHHhcCcc--hhhhhHHHHHHHHHHHHhccCCcee-cc-ccHHHHHHHHHHHHhccccc---------cccC-ee
Confidence            4556666677665  8999998888877421  0000000 11 12266777777787877776         2221 12


Q ss_pred             CHHHHHHHHHHHHhcCC-CCcHHHHHhh--hccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCC
Q 021051           95 HPIVRHEAAEALGAIGL-ESNIPLLKNS--LVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASS  171 (318)
Q Consensus        95 ~~~vR~~a~~~L~~~~~-~~~~~~L~~~--l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  171 (318)
                      -..||..|.++||.+.. ++....|..+  ....+.++||..+..+|..+.          +.+..  +           
T Consensus       241 VAPVRETaAQtLGaL~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~----------DLL~~--L-----------  297 (800)
T 3oc3_A          241 VAPVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLK----------EFVED--K-----------  297 (800)
T ss_dssp             BCHHHHHHHHHHHHHTTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHTG----------GGCCC--H-----------
T ss_pred             eeehHHHHHHHHHHHHhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHHH----------HHHHH--H-----------
Confidence            25788888888887621 1113333331  236678888888888887543          11110  0           


Q ss_pred             CccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHH----HhCC--CCHHHHHHHHHHHhc--------cCCcc
Q 021051          172 CSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIID----SLGA--TSALLKHEVAYVLGQ--------LQNKA  237 (318)
Q Consensus       172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~----~l~d--~~~~vr~~a~~~L~~--------~~~~~  237 (318)
                      ...++.++..|.|.++++  |..|+.+|.-+..++.++.+.+    +|.+  +-.......+..|+.        ..++.
T Consensus       298 d~Vv~aVL~GL~D~DDDV--RAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~  375 (800)
T 3oc3_A          298 DGLCRKLVSLLSSPDEDI--KLLSAELLCHFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPE  375 (800)
T ss_dssp             HHHHHHHHHHTTCSSHHH--HHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSG
T ss_pred             HHHHHHHHhhcCCcccHH--HHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChH
Confidence            235677778887777664  8888888877655444444443    2221  111111222333333        23457


Q ss_pred             hHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHH-hhcCCCHHHHHHHHHHHH
Q 021051          238 ASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKE-FAKDPEPIVSQSCEVALS  295 (318)
Q Consensus       238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~~~~~~vr~~a~~aL~  295 (318)
                      .+|.|..++.+.  -+.||.+++++|..+-...++..+.+ ++-+.+++|+..+..+..
T Consensus       376 LVPRL~PFLRHt--ITSVR~AVL~TL~tfL~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          376 RLKDIFPCFTSP--VPEVRTSILNMVKNLSEESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GGGGTGGGGTCS--SHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcCC--cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            788899999987  79999999999999887777777776 677888889887777664

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.78  E-value=0.00097  Score=65.70  Aligned_cols=221  Identities=13%  Similarity=0.145  Sum_probs=155.1

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----C-------ChHHHHHHhccCCCHHHHHHHHHHHhcc---CC
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----P-------GPRDALIRATKDSSNLLAHEAAFALGQM---QD   78 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----~-------~~~~~L~~~l~d~~~~vr~~a~~aL~~~---~~   78 (318)
                      ....++.|.+.+.++..  .  ..|+..++.+..     +       ...+.+...+.|....||.+|..++..+   -.
T Consensus        52 ~~~~~~~~~~~~~~k~~--~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~  127 (986)
T 2iw3_A           52 PEHFFGELAKGIKDKKT--A--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN  127 (986)
T ss_dssp             CHHHHHHHHHHHTSHHH--H--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC
T ss_pred             chhHHHHHHHHHhccCC--H--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC
Confidence            34678888999988864  2  556666655542     1       2356666677899999998877665432   23


Q ss_pred             C----CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 021051           79 A----EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPLLKNSLVSDPAQEVRETCELALERIEKL  144 (318)
Q Consensus        79 ~----~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~  144 (318)
                      +    ..+|.|...+.+ ...|..+.+|+..++.+..          ++.+|.+.. ...|..++|..++..++..+.  
T Consensus       128 ~~a~~~~~~~~~~~~~~-~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~d~k~~v~~~~~~~~~~~~--  203 (986)
T 2iw3_A          128 PVAIKALLPHLTNAIVE-TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSE-TMWDTKKEVKAAATAAMTKAT--  203 (986)
T ss_dssp             GGGHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHG--
T ss_pred             HHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHh-hcccCcHHHHHHHHHHHHHHH--
Confidence            3    346777777773 3469999999999987752          457888888 568999999999999999887  


Q ss_pred             hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----h----hHHHHHHHHh
Q 021051          145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----D----EAVSAIIDSL  215 (318)
Q Consensus       145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----~----~~~~~l~~~l  215 (318)
                              ..+.+.++           +..+|.|++.+.+++.    -..++..|+...-     .    -..|.|...|
T Consensus       204 --------~~~~n~d~-----------~~~~~~~~~~~~~p~~----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l  260 (986)
T 2iw3_A          204 --------ETVDNKDI-----------ERFIPSLIQCIADPTE----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGL  260 (986)
T ss_dssp             --------GGCCCTTT-----------GGGHHHHHHHHHCTTH----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred             --------hcCCCcch-----------hhhHHHHHHHhcChhh----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhh
Confidence                    12222222           2369999999988854    4556777776532     1    3457778888


Q ss_pred             CCCCHHHHHHHHHHHhccCC------------cchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051          216 GATSALLKHEVAYVLGQLQN------------KAASAALSDVLRNVNEHPMVRHEAAEALGSI  266 (318)
Q Consensus       216 ~d~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~  266 (318)
                      ++....+++.++-.+.+|..            +..+|.|....... .+|++|.-+-+|+..+
T Consensus       261 ~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~-~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          261 NERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATI-ADPEAREVTLRALKTL  322 (986)
T ss_dssp             TSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTC-CSHHHHHHHHHHHHHH
T ss_pred             ccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhcc-CCHHHHHHHHHHHHHH
Confidence            99999999999888888752            44556666655544 3899998887776655

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=97.75  E-value=0.00024  Score=57.67  Aligned_cols=121  Identities=21%  Similarity=0.151  Sum_probs=88.0

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhccCC-CChHHHHHH-hccCCCHHHHHHHHHHHhccC----CCCcHHHHHHhhhc
Q 021051           18 EKFLCDRLVDPTQPISERFRALFSLRNLKG-PGPRDALIR-ATKDSSNLLAHEAAFALGQMQ----DAEAIPALEAVLND   91 (318)
Q Consensus        18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~~   91 (318)
                      ...+...|-..+. .++|..|+..++.... ++..+.+.+ +-.|+++.||..++.+++.+.    ....++.+..... 
T Consensus        72 ~~~la~~L~~~~~-deVR~~Av~lLg~~~~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~-  149 (240)
T 3l9t_A           72 IKKLAFLAYQSDV-YQVRMYAVFLFGYLSKDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLK-  149 (240)
T ss_dssp             HHHHHHHHHTCSS-HHHHHHHHHHHHHTTTSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHH-
T ss_pred             HHHHHHHHHhCcc-hHHHHHHHHHHHhccCcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc-
Confidence            3344444444443 3899999999987721 234555555 336889999999999888654    3346788888888 


Q ss_pred             CCCCHHHHHHHHHHHHh---c----CCC-CcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           92 FSLHPIVRHEAAEALGA---I----GLE-SNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        92 ~~~~~~vR~~a~~~L~~---~----~~~-~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                       |+++.||+.|+..+..   .    .++ ..++.|.. +..|++..||++.+++|..+.
T Consensus       150 -d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~-L~~D~s~yVrKSVan~LrD~S  206 (240)
T 3l9t_A          150 -SSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIAD-LKEDVSEYVRKSVGNALRDIS  206 (240)
T ss_dssp             -CSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHT-TTTCSCHHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHh
Confidence             9999999999998733   1    122 24566666 789999999999999999887

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.58  E-value=0.00015  Score=59.61  Aligned_cols=94  Identities=12%  Similarity=0.064  Sum_probs=66.8

Q ss_pred             ccHHHHHHHHcCCCcChHHHHHHHHHHHhCC--C---------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC------
Q 021051          173 SSVDMLREVLLGEEKGMYERYAALFALRNHG--G---------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN------  235 (318)
Q Consensus       173 ~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--~---------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~------  235 (318)
                      -.++.|+++|.++++...++..|+..+.++.  +         ..++|.|+++|.++++.++..|+.+|+.+..      
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            4699999999888873334777777776653  1         2567888888888888888888888887642      


Q ss_pred             -----cchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          236 -----KAASAALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       236 -----~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                           ..++|.|++++.+.. ++.++..|+.+|..+.
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS  123 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLS  123 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence                 346788888886421 6777777776666664

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.0016  Score=54.98  Aligned_cols=197  Identities=16%  Similarity=0.119  Sum_probs=112.4

Q ss_pred             HHHhhhcCCCCHHHHHHHHHHHHhc-C--------------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCc
Q 021051           85 LEAVLNDFSLHPIVRHEAAEALGAI-G--------------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGS  149 (318)
Q Consensus        85 L~~~l~~~~~~~~vR~~a~~~L~~~-~--------------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~  149 (318)
                      |.+-+.  +++|..|..|+..|..+ .              .....+.+.+ ...|.+..|...++.++..+..   ...
T Consensus        14 l~e~l~--sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk-~l~DsN~~v~~~al~~l~~~~~---~~~   87 (278)
T 4ffb_C           14 LEERLT--YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQ-YITDSNVVAQEQAIVALNSLID---AFA   87 (278)
T ss_dssp             HHHHTT--CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHH-HTTCSSHHHHHHHHHHHHHHHT---TCC
T ss_pred             HHHhcc--cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHH---Hhh
Confidence            455666  67777777777766432 0              1123456666 5589999999999998887651   000


Q ss_pred             cccccccCCCCcccCCCCCCCCCccHHHHHHH-HcCCCcChHHHHHHHHHHHhC-----CChhHHHHHHHHhCCCCHHHH
Q 021051          150 DGSSMTERSPFMSVDPAAPASSCSSVDMLREV-LLGEEKGMYERYAALFALRNH-----GGDEAVSAIIDSLGATSALLK  223 (318)
Q Consensus       150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~-l~~~~~~~~~r~~a~~~L~~~-----~~~~~~~~l~~~l~d~~~~vr  223 (318)
                      .  .......+...       ....++.|++- +.+....+  |..++.++..+     .....++.+...+++.+|.++
T Consensus        88 ~--~~~~~~~~~~~-------~~~~l~~lveK~l~~~k~~~--~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~  156 (278)
T 4ffb_C           88 S--SSLKNAHNITL-------ISTWTPLLVEKGLTSSRATT--KTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLI  156 (278)
T ss_dssp             -----CCHHHHHHH-------HHHHHHHHHHHTSSCCCHHH--HHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHH
T ss_pred             h--hhcccchhHHH-------HHHHHHHHHHHHhcCccHHH--HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHH
Confidence            0  00000000000       01134555544 55665544  76666655433     234567778888899999999


Q ss_pred             HHHHHHHhcc----CCc---------chHHHHHHHHhccCCCHHHHHHHHHHHhccCCh--hhHHHHHH-hhcCCCHHHH
Q 021051          224 HEVAYVLGQL----QNK---------AASAALSDVLRNVNEHPMVRHEAAEALGSIADD--QSIGLLKE-FAKDPEPIVS  287 (318)
Q Consensus       224 ~~a~~~L~~~----~~~---------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~--~~~~~L~~-~l~~~~~~vr  287 (318)
                      ..++.+|..+    +..         ..++.+..++.+.  |+.||.+|+..++.+-.-  +.+..+.. ++.+-.+...
T Consensus       157 ~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~--~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~  234 (278)
T 4ffb_C          157 AAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHG--DRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQV  234 (278)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCS--SHHHHHHHHHHHHHHHTC-----------CTTSSCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHH
Confidence            9998888763    221         1334566677887  899999999988775210  11222332 3455556666


Q ss_pred             HHHHHHHHhchhh
Q 021051          288 QSCEVALSMLEYE  300 (318)
Q Consensus       288 ~~a~~aL~~l~~~  300 (318)
                      ......+.++...
T Consensus       235 k~le~~f~k~~~~  247 (278)
T 4ffb_C          235 KDLHKLFAKVGDE  247 (278)
T ss_dssp             HHHHHHHSCCCC-
T ss_pred             HHHHHHHHhcCCC
Confidence            6666666666443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=97.39  E-value=0.012  Score=55.05  Aligned_cols=270  Identities=16%  Similarity=0.172  Sum_probs=170.9

Q ss_pred             cCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC-------ChHHHHHHhcc-C-CCHHHHHHHHHHHhc-cC----
Q 021051           12 KSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGP-------GPRDALIRATK-D-SSNLLAHEAAFALGQ-MQ----   77 (318)
Q Consensus        12 ~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~-------~~~~~L~~~l~-d-~~~~vr~~a~~aL~~-~~----   77 (318)
                      +...++++.|++-|.+..- .+.|..|+..|..+..+       .+.+.|+..|+ | .|..+-..++.+|.. +.    
T Consensus        17 qs~~etI~~L~~Rl~~~tl-~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           17 HTEAETIQKLCDRVASSTL-LDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             -CHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             CChhhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            3566899999999987764 68999999999887652       24777777774 3 366666667776632 11    


Q ss_pred             ------------------------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-------------CCCcHHHHHh
Q 021051           78 ------------------------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-------------LESNIPLLKN  120 (318)
Q Consensus        78 ------------------------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------------~~~~~~~L~~  120 (318)
                                              ..+.++.|+.+|.  .++..+|..+++.|..+.             .+..++.|..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~--~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~  173 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE--EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD  173 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc--CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence                                    1244788899998  899999999999887653             4678899999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCc--ChHHHHHHHHH
Q 021051          121 SLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEK--GMYERYAALFA  198 (318)
Q Consensus       121 ~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~--~~~~r~~a~~~  198 (318)
                       +++|+...+|..++..|..+.   .....+-..+.              -+.+++.|+..+.....  ...+-..++..
T Consensus       174 -lL~d~rE~iRneallLL~~Lt---~~n~~iQklVA--------------FEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~l  235 (651)
T 3grl_A          174 -LLADSREVIRNDGVLLLQALT---RSNGAIQKIVA--------------FENAFERLLDIITEEGNSDGGIVVEDCLIL  235 (651)
T ss_dssp             -GGGCSSHHHHHHHHHHHHHHH---TTCHHHHHHHH--------------HTTHHHHHHHHHHHHTGGGSHHHHHHHHHH
T ss_pred             -HHhCchHHHHHHHHHHHHHHh---cCCHHHHHHHH--------------HhccHHHHHHHHHhcCCCccchhHHHHHHH
Confidence             778999999999999999886   11111000000              13467888888865443  11133344444


Q ss_pred             HHhCC--C---------hhHHHHHHHHhCCCC----H--HHHHH---HHHHHhccC-----------------CcchHHH
Q 021051          199 LRNHG--G---------DEAVSAIIDSLGATS----A--LLKHE---VAYVLGQLQ-----------------NKAASAA  241 (318)
Q Consensus       199 L~~~~--~---------~~~~~~l~~~l~d~~----~--~vr~~---a~~~L~~~~-----------------~~~~~~~  241 (318)
                      +.++-  +         ...++.|..++..++    |  .....   ++.++.-+-                 ....++.
T Consensus       236 l~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~  315 (651)
T 3grl_A          236 LQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQ  315 (651)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHH
Confidence            44431  1         134445555554221    1  11122   222222221                 1234677


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHhccC--Ch------------------hhHHHHHHhhcC-CCHHHHHHHHHHHHhchhh
Q 021051          242 LSDVLRNVNEHPMVRHEAAEALGSIA--DD------------------QSIGLLKEFAKD-PEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       242 L~~~l~~~~~~~~vr~~a~~aL~~~~--~~------------------~~~~~L~~~l~~-~~~~vr~~a~~aL~~l~~~  300 (318)
                      |++++-...-...+|..|+.+++.+-  .+                  ..+..|..++++ ....+|.+++..+.-+-++
T Consensus       316 Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~  395 (651)
T 3grl_A          316 LCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK  395 (651)
T ss_dssp             HHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence            77877654446789999999998863  21                  234445555665 4588899999999988777


Q ss_pred             hc
Q 021051          301 QL  302 (318)
Q Consensus       301 ~~  302 (318)
                      +.
T Consensus       396 N~  397 (651)
T 3grl_A          396 NQ  397 (651)
T ss_dssp             CH
T ss_pred             CH
Confidence            65

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.20  E-value=0.0055  Score=55.98  Aligned_cols=208  Identities=13%  Similarity=0.037  Sum_probs=136.0

Q ss_pred             hHHHHHHhccCCCHHHHHHHHHHHhccCC--CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCC-
Q 021051           50 PRDALIRATKDSSNLLAHEAAFALGQMQD--AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDP-  126 (318)
Q Consensus        50 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~-  126 (318)
                      .-+.|..-|-|+.|.+|..|+-+|.++-.  .......    ...+.|-.+|.-++-+|-++||          +.+|. 
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~----~~~N~DLAvRLLCVLALDRFGD----------YVSDqV  240 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ----IRVDSKLFSKIYEILVTDKFND----------FVDDRT  240 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC----CCCCTTHHHHHHHHHHHBCCBB----------CSSSSC
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee----ccccHHHHHHHHHHHHhccccc----------cccCee
Confidence            45566666678888999888888765310  0000000    1113477888888888888876          32332 


Q ss_pred             CHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--
Q 021051          127 AQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--  204 (318)
Q Consensus       127 ~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--  204 (318)
                      -..||..++.+|+.+. ..+..                       -..+..|+..+..+.|.  +|..++-.|..+.+  
T Consensus       241 VAPVRETaAQtLGaL~-hLp~e-----------------------~~IL~qLV~~l~~~~WE--VRHGGLLGLKYL~DLL  294 (800)
T 3oc3_A          241 VAPVRDAAAYLLSRIY-PLIGP-----------------------NDIIEQLVGFLDSGDWQ--VQFSGLIALGYLKEFV  294 (800)
T ss_dssp             BCHHHHHHHHHHHHHT-TTSCS-----------------------CCHHHHHTTGGGCSCHH--HHHHHHHHHHHTGGGC
T ss_pred             eeehHHHHHHHHHHHH-hCChh-----------------------HHHHHHHHhhcCCCCee--ehhhhHHHHHHHHHHH
Confidence            3579999999999763 22111                       12455666656677766  49999988887743  


Q ss_pred             ---hhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHh----ccCCCHHHH-HHHHHHHhc---c-----CC
Q 021051          205 ---DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLR----NVNEHPMVR-HEAAEALGS---I-----AD  268 (318)
Q Consensus       205 ---~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~----~~~~~~~vr-~~a~~aL~~---~-----~~  268 (318)
                         +..++.+...|.|.+.+||..|+.+|--+..++.++.|+..+.    +-+ |-... ...+.-|+.   .     .+
T Consensus       295 ~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LD-DLSASTgSVMdLLAkL~s~p~~a~~d  373 (800)
T 3oc3_A          295 EDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEE-LISVSKTSNLSLLTKIYRENPELSIP  373 (800)
T ss_dssp             CCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCC-SCCTTHHHHHHHHHHHHHHCTTCCCC
T ss_pred             HHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhc-ccchhhHHHHHHHHHHHcCCcccccC
Confidence               4567788889999999999999999998877666666666553    221 21111 111222222   1     24


Q ss_pred             hhhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051          269 DQSIGLLKEFAKDPEPIVSQSCEVALSMLE  298 (318)
Q Consensus       269 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~  298 (318)
                      +..+|.|..++.-+-..||.++..+|..+-
T Consensus       374 p~LVPRL~PFLRHtITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          374 PERLKDIFPCFTSPVPEVRTSILNMVKNLS  403 (800)
T ss_dssp             SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred             hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence            567888888899899999999999998876

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.03  E-value=0.0029  Score=52.77  Aligned_cols=125  Identities=13%  Similarity=0.020  Sum_probs=78.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC-
Q 021051          124 SDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH-  202 (318)
Q Consensus       124 ~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~-  202 (318)
                      .|.++.|-..+...|..+-+.....          .+...+..    ..-.+|.|++-+.|+.+.+  |..+...+..+ 
T Consensus        97 ~d~N~~v~~~~L~~L~~l~~~l~~~----------~y~~~~~e----a~~~lP~LveKlGd~k~~v--R~~~r~il~~l~  160 (266)
T 2of3_A           97 FETNPAALIKVLELCKVIVELIRDT----------ETPMSQEE----VSAFVPYLLLKTGEAKDNM--RTSVRDIVNVLS  160 (266)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHHHT----------TCCCCHHH----HHHHHHHHHHGGGCSSHHH--HHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHhc----------cccchHHH----HHHHHHHHHHHhCCChHHH--HHHHHHHHHHHH
Confidence            4778888888888887653111000          01000000    0125688888888877664  77776655444 


Q ss_pred             ---CChhHHHHHHHHhCCCCHHHHHHHHHHHhcc----C--CcchH---HHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051          203 ---GGDEAVSAIIDSLGATSALLKHEVAYVLGQL----Q--NKAAS---AALSDVLRNVNEHPMVRHEAAEALGSI  266 (318)
Q Consensus       203 ---~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~----~--~~~~~---~~L~~~l~~~~~~~~vr~~a~~aL~~~  266 (318)
                         ......+.+.+.+.+.++..|.+++..++.+    |  ....+   +.+..++.|.  |..||.+|+.++..+
T Consensus       161 ~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~  234 (266)
T 2of3_A          161 DVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDK--DVNVRNAAINVLVAC  234 (266)
T ss_dssp             HHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence               2234667788888888888888888777754    2  23456   7777777776  777777777776654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=96.98  E-value=0.0039  Score=62.68  Aligned_cols=124  Identities=14%  Similarity=0.138  Sum_probs=100.1

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccC-------CCHHHHHHHHHHHhccCCC---CcHHHHH
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKD-------SSNLLAHEAAFALGQMQDA---EAIPALE   86 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d-------~~~~vr~~a~~aL~~~~~~---~~~~~L~   86 (318)
                      ..+.|.+.+...+.  ..+..++++||+++.+.+++.|.+++..       ....+|..|+++|.++...   ...+.+.
T Consensus       441 i~~~l~~~~~~~~~--~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~  518 (1056)
T 1lsh_A          441 LHDLLSQSSDRAKE--EEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVL  518 (1056)
T ss_dssp             HHHHHHHHHHTTCH--HHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCh--HHHHHHHHHhhccCChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHH
Confidence            44455566666654  8899999999999999999999998842       2467999999999988764   3678889


Q ss_pred             HhhhcCCCCHHHHHHHHHHHHhc-CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           87 AVLNDFSLHPIVRHEAAEALGAI-GLESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        87 ~~l~~~~~~~~vR~~a~~~L~~~-~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      +++.|...++.+|..|+..|-.. +....+..+...+..|++..|+......|..+.
T Consensus       519 ~i~~n~~e~~EvRiaA~~~Lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla  575 (1056)
T 1lsh_A          519 PIFLNVAIKSELRIRSCIVFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLS  575 (1056)
T ss_dssp             HHHHCTTSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence            99976689999999999999875 445567778887778899999988888888776

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.011  Score=49.84  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=69.9

Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHhccCC---------------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC------
Q 021051           21 LCDRLVDPTQPISERFRALFSLRNLKG---------------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA------   79 (318)
Q Consensus        21 L~~~L~~~~~~~~~r~~A~~~l~~~~~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------   79 (318)
                      |.+.|.|++  |..|..|+..+.....               ......+.+.++|.+..+...++.++..+-..      
T Consensus        14 l~e~l~sk~--WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~   91 (278)
T 4ffb_C           14 LEERLTYKL--WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSL   91 (278)
T ss_dssp             HHHHTTCSS--HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---C
T ss_pred             HHHhcccCc--HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence            567788775  9999999998755321               12344566777888888888887777543210      


Q ss_pred             ----------CcHHHHHH-hhhcCCCCHHHHHHHHHHHHhcC-----CCCcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051           80 ----------EAIPALEA-VLNDFSLHPIVRHEAAEALGAIG-----LESNIPLLKNSLVSDPAQEVRETCELALERI  141 (318)
Q Consensus        80 ----------~~~~~L~~-~l~~~~~~~~vR~~a~~~L~~~~-----~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~  141 (318)
                                ..++.|++ .+.  +..+.+|..++.++..+.     .....+.+.. ..++++|.+|..++..|.++
T Consensus        92 ~~~~~~~~~~~~l~~lveK~l~--~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~-~l~~Knpkv~~~~l~~l~~~  166 (278)
T 4ffb_C           92 KNAHNITLISTWTPLLVEKGLT--SSRATTKTQSMSCILSLCGLDTSITQSVELVIP-FFEKKLPKLIAAAANCVYEL  166 (278)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGG-GGGCSCHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-HHhccCHHHHHHHHHHHHHH
Confidence                      11233333 244  566777766666554321     1223455555 45677777777777666654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=96.58  E-value=0.014  Score=54.53  Aligned_cols=98  Identities=16%  Similarity=0.236  Sum_probs=76.4

Q ss_pred             CChhHHHHHHHHhCCCCHHHHHHHHHHHhccC-------------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC-
Q 021051          203 GGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ-------------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD-  268 (318)
Q Consensus       203 ~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~-------------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-  268 (318)
                      .+.+.++.|+.+|+..+..+|..+++.|..+.             .+..++.|+.++.|.  ...+|-+++..|..+.. 
T Consensus       119 ~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~--rE~iRneallLL~~Lt~~  196 (651)
T 3grl_A          119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS--REVIRNDGVLLLQALTRS  196 (651)
T ss_dssp             HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS--SHHHHHHHHHHHHHHHTT
T ss_pred             cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc--hHHHHHHHHHHHHHHhcC
Confidence            45678888999999999999999998888653             357889999999987  78999999999988853 


Q ss_pred             ----------hhhHHHHHHhhcCCC----HHHHHHHHHHHHhchhhhc
Q 021051          269 ----------DQSIGLLKEFAKDPE----PIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       269 ----------~~~~~~L~~~l~~~~----~~vr~~a~~aL~~l~~~~~  302 (318)
                                .++++.|...+.++.    ..|-.-|...|..+-..++
T Consensus       197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~  244 (651)
T 3grl_A          197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN  244 (651)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence                      246777777766543    3677777788887776664

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.49  E-value=0.0087  Score=49.91  Aligned_cols=110  Identities=14%  Similarity=0.105  Sum_probs=81.8

Q ss_pred             CCCCCHHHHHHHHHHHhccCC--------------CChHHHHHHhccCCCHHHHHHHHHHHhccC----CCCcHHHHHHh
Q 021051           27 DPTQPISERFRALFSLRNLKG--------------PGPRDALIRATKDSSNLLAHEAAFALGQMQ----DAEAIPALEAV   88 (318)
Q Consensus        27 ~~~~~~~~r~~A~~~l~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~   88 (318)
                      +++.  .+-..++..+..+-+              ...+|.|+.-++|....+|..+-..+..+.    .....+.+.+.
T Consensus        98 d~N~--~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g  175 (266)
T 2of3_A           98 ETNP--AALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDA  175 (266)
T ss_dssp             SCCH--HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHG
T ss_pred             CCCH--HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            6654  677777776655311              135688888889999999988776654432    22367888888


Q ss_pred             hhcCCCCHHHHHHHHHHHHhc----C--CCCcH---HHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051           89 LNDFSLHPIVRHEAAEALGAI----G--LESNI---PLLKNSLVSDPAQEVRETCELALERI  141 (318)
Q Consensus        89 l~~~~~~~~vR~~a~~~L~~~----~--~~~~~---~~L~~~l~~d~~~~vr~~a~~aL~~~  141 (318)
                      ++  +.++.+|.+++..++.+    |  ....+   +.+.+ +.+|+|..||.+|..++..+
T Consensus       176 ~k--sKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~-ll~D~d~~VR~aAl~~lve~  234 (266)
T 2of3_A          176 LK--SKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAP-FVGDKDVNVRNAAINVLVAC  234 (266)
T ss_dssp             GG--CSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGG-GGGCSSHHHHHHHHHHHHHH
T ss_pred             Hc--cCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence            88  89999999999888753    3  34567   88888 77899999999999998865

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.40  E-value=0.027  Score=56.13  Aligned_cols=212  Identities=8%  Similarity=0.007  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHhccCC---CCcHHHHHHh----hh----cCCCCHHHHHHHHHHHHhcCC---------C------CcHHH
Q 021051           64 LLAHEAAFALGQMQD---AEAIPALEAV----LN----DFSLHPIVRHEAAEALGAIGL---------E------SNIPL  117 (318)
Q Consensus        64 ~vr~~a~~aL~~~~~---~~~~~~L~~~----l~----~~~~~~~vR~~a~~~L~~~~~---------~------~~~~~  117 (318)
                      ..|..|...|..+..   ...++.+.+.    +.    +.+++|..|.+|+.+++.+..         .      +..+.
T Consensus       376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~  455 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF  455 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred             CcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH
Confidence            356677666654332   2344444443    33    115679999999998887621         1      23333


Q ss_pred             HHhh---hccCC---CHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHH
Q 021051          118 LKNS---LVSDP---AQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYE  191 (318)
Q Consensus       118 L~~~---l~~d~---~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~  191 (318)
                      +.+.   ...++   +|.||..++++++++.+|.+.  .   .+                ...++.++..+.+++.  .|
T Consensus       456 l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~--~---~l----------------~~~l~~l~~~L~d~~~--~V  512 (960)
T 1wa5_C          456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK--A---QL----------------IELMPILATFLQTDEY--VV  512 (960)
T ss_dssp             HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH--H---HH----------------HHHHHHHHHHTTCSCH--HH
T ss_pred             HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH--H---HH----------------HHHHHHHHHHhCCCCh--hH
Confidence            3321   23566   999999999999999844210  0   00                2246677777776654  46


Q ss_pred             HHHHHHHHHhCCC---------------------hhHHHHHHHHhCCCC---HH--HHHHHHHHHhc----cCC---c--
Q 021051          192 RYAALFALRNHGG---------------------DEAVSAIIDSLGATS---AL--LKHEVAYVLGQ----LQN---K--  236 (318)
Q Consensus       192 r~~a~~~L~~~~~---------------------~~~~~~l~~~l~d~~---~~--vr~~a~~~L~~----~~~---~--  236 (318)
                      |..|+.++.++..                     +..+..|..+++...   ..  ....+..+++.    +++   +  
T Consensus       513 ~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~  592 (960)
T 1wa5_C          513 YTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF  592 (960)
T ss_dssp             HHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH
T ss_pred             HHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH
Confidence            9999999988432                     122333444444420   11  11233334433    222   1  


Q ss_pred             -chHHHHHHHHhc---cCCCHHHHHHHHHHHhccC---Ch--------hhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051          237 -AASAALSDVLRN---VNEHPMVRHEAAEALGSIA---DD--------QSIGLLKEFAKDPEPIVSQSCEVALSMLE  298 (318)
Q Consensus       237 -~~~~~L~~~l~~---~~~~~~vr~~a~~aL~~~~---~~--------~~~~~L~~~l~~~~~~vr~~a~~aL~~l~  298 (318)
                       ..++.|...+..   .++++.++...+++++.+.   .+        ...+.+...+..........+...+..+.
T Consensus       593 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          593 PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence             233444444432   2347888877788777663   22        34566666555443344444555554443

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.28  E-value=0.029  Score=55.88  Aligned_cols=108  Identities=14%  Similarity=0.135  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHhccCC---CChHHHHHH----hcc------CCCHHHHHHHHHHHhccCC---------C------CcHH
Q 021051           32 ISERFRALFSLRNLKG---PGPRDALIR----ATK------DSSNLLAHEAAFALGQMQD---------A------EAIP   83 (318)
Q Consensus        32 ~~~r~~A~~~l~~~~~---~~~~~~L~~----~l~------d~~~~vr~~a~~aL~~~~~---------~------~~~~   83 (318)
                      +..|..|...+..+..   ....+.+..    .+.      ++++..|.+|+.++|.+..         .      ...+
T Consensus       375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~  454 (960)
T 1wa5_C          375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD  454 (960)
T ss_dssp             -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred             cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence            3577777777765533   234433333    344      6788999999998887631         1      2233


Q ss_pred             H----HHHhhhcCCC---CHHHHHHHHHHHHhcCCC-------CcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           84 A----LEAVLNDFSL---HPIVRHEAAEALGAIGLE-------SNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        84 ~----L~~~l~~~~~---~~~vR~~a~~~L~~~~~~-------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      .    +...+.  ++   ++.+|..|+.+++++...       ..++.+.. .+.|+++.||..|+.++.++.
T Consensus       455 ~l~~~v~p~l~--~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~-~L~d~~~~V~~~A~~Al~~~~  524 (960)
T 1wa5_C          455 FFTKEIAPDLT--SNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILAT-FLQTDEYVVYTYAAITIEKIL  524 (960)
T ss_dssp             HHHHHTHHHHH--CSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhHHHhc--CCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHHH
Confidence            3    344456  55   899999999999988532       23455666 346889999999999999876

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=95.99  E-value=0.17  Score=50.55  Aligned_cols=107  Identities=19%  Similarity=0.042  Sum_probs=71.3

Q ss_pred             HHHHHhCCChhHHH----HHHHH----hC---CCCHHHHHHHHHHHhccCCc----------------chHHHHHHHHh-
Q 021051          196 LFALRNHGGDEAVS----AIIDS----LG---ATSALLKHEVAYVLGQLQNK----------------AASAALSDVLR-  247 (318)
Q Consensus       196 ~~~L~~~~~~~~~~----~l~~~----l~---d~~~~vr~~a~~~L~~~~~~----------------~~~~~L~~~l~-  247 (318)
                      .+.+..++....+.    .+...    +.   +.+|..+..++.+|+.+++.                ...+.|..++. 
T Consensus       422 ~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s  501 (980)
T 3ibv_A          422 QDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTS  501 (980)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHS
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhC
Confidence            34455556555555    44433    31   34688889999998876542                24455555554 


Q ss_pred             ----ccCCCHHHHHHHHHHHhccC-----ChhhHHHHHH------hhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          248 ----NVNEHPMVRHEAAEALGSIA-----DDQSIGLLKE------FAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       248 ----~~~~~~~vr~~a~~aL~~~~-----~~~~~~~L~~------~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                          ++  +|.||..+++.+|++.     .++.++.+..      .+.++++.|+..|+.++.++-.....+
T Consensus       502 ~i~~~~--hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~  571 (980)
T 3ibv_A          502 QVCRHP--HPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ  571 (980)
T ss_dssp             STTTCC--CHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred             CCCCCC--CHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH
Confidence                44  8999999999999986     3444554444      333577889999999999987666544

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=95.61  E-value=0.31  Score=39.38  Aligned_cols=130  Identities=9%  Similarity=-0.068  Sum_probs=86.9

Q ss_pred             HHHHHHHcCCCcChHHHHHHHHHHHhCC---ChhHHHHHHHHhC-CCCHHHHHHHHHHHhcc--CCcc-hHHHHHHHHhc
Q 021051          176 DMLREVLLGEEKGMYERYAALFALRNHG---GDEAVSAIIDSLG-ATSALLKHEVAYVLGQL--QNKA-ASAALSDVLRN  248 (318)
Q Consensus       176 ~~L~~~l~~~~~~~~~r~~a~~~L~~~~---~~~~~~~l~~~l~-d~~~~vr~~a~~~L~~~--~~~~-~~~~L~~~l~~  248 (318)
                      ..+..+..++..+  .|..|+..++...   ..+.++.+...+. .++|.+.-..+.+++.+  +.+. ..+.+...+.+
T Consensus        58 ~~~~~L~~s~~~E--~r~la~~~l~~~~~~~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~~~~~i~~W~~s  135 (220)
T 2b6c_A           58 QEIEAYYQKTERE--YQYVAIDLALQNVQRFSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTELPTIFALFYGA  135 (220)
T ss_dssp             HHHHHHHTSSSHH--HHHHHHHHHHHTGGGCCHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGGHHHHHHHHTTC
T ss_pred             HHHHHHHcCchhH--HHHHHHHHHHHHHhhCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHHHHHHHHHHHcC
Confidence            3344444444444  4999999998664   4455555555554 55777776655556654  2344 56778887777


Q ss_pred             cCCCHHHHHHHHHHHhccCC---h-hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcc
Q 021051          249 VNEHPMVRHEAAEALGSIAD---D-QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYL  309 (318)
Q Consensus       249 ~~~~~~vr~~a~~aL~~~~~---~-~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~  309 (318)
                      +  +..+|+.|+.++.....   + ..++.+...+.|++.+|+.++.|+|..+.......-..|+
T Consensus       136 ~--~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl  198 (220)
T 2b6c_A          136 E--NFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM  198 (220)
T ss_dssp             S--SHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             C--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            6  88899888887655432   2 2455555578899999999999999999887665434443

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=95.36  E-value=0.63  Score=37.84  Aligned_cols=124  Identities=11%  Similarity=0.072  Sum_probs=82.8

Q ss_pred             HHHHHHcCCCcChHHHHHHHHHHHhCC---ChhHHHHHHHHh-CCCCHHHHHHH-HHHHhcc--CCcc-hHHHHHHHHhc
Q 021051          177 MLREVLLGEEKGMYERYAALFALRNHG---GDEAVSAIIDSL-GATSALLKHEV-AYVLGQL--QNKA-ASAALSDVLRN  248 (318)
Q Consensus       177 ~L~~~l~~~~~~~~~r~~a~~~L~~~~---~~~~~~~l~~~l-~d~~~~vr~~a-~~~L~~~--~~~~-~~~~L~~~l~~  248 (318)
                      .+..+..++..+  .|..|+..+....   +.+.++.+...+ ..++|.+.-.. ..++|.+  +++. ..+.+...+.+
T Consensus        65 ~~~~L~~~~~~E--~r~~ai~~l~~~~k~~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~~~~~l~~W~~s  142 (232)
T 3jxy_A           65 IIRELWDLPERE--FQAAALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIAS  142 (232)
T ss_dssp             HHHHHHTSSBHH--HHHHHHHHHHHTGGGCCGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGGGGGGTHHHHHHS
T ss_pred             HHHHHhcCcHHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHHHHHHHHHHHhcC
Confidence            444444444433  5888888887542   345666666655 45677776544 2444443  2444 66888888887


Q ss_pred             cCCCHHHHHHHHHHHhccC---Ch-hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          249 VNEHPMVRHEAAEALGSIA---DD-QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       249 ~~~~~~vr~~a~~aL~~~~---~~-~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      +  ++.+|+.|+..+....   +. ...+.+...+.+++.+|+.++.|+|..+.......
T Consensus       143 ~--~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~  200 (232)
T 3jxy_A          143 D--NIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDV  200 (232)
T ss_dssp             S--CHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred             C--chHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHH
Confidence            6  8888888888765443   22 24555666788999999999999999998876544

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=94.81  E-value=0.13  Score=49.12  Aligned_cols=55  Identities=22%  Similarity=0.177  Sum_probs=37.0

Q ss_pred             HHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHH-HHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           85 LEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPL-LKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        85 L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~-L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      +++.|+  ++++..|.+|+.+|+.+..          .+.+.. +.. ++.|++..||..|+.+|+++.
T Consensus        39 ll~~L~--S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~-lL~D~~~~Vr~~A~gaLrnL~  104 (684)
T 4gmo_A           39 VLKDLK--SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTE-TLTDNNIDSRAAGWEILKVLA  104 (684)
T ss_dssp             HHHHHS--SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHT-TTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHcC--CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHH-HcCCCCHHHHHHHHHHHHHHH
Confidence            444455  5666666666666666542          234444 444 678999999999999998886

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=94.78  E-value=0.14  Score=51.20  Aligned_cols=111  Identities=13%  Similarity=0.074  Sum_probs=77.7

Q ss_pred             HHHHHHHhCCChhHHHHHHHH----hCC--CCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccC---CCH
Q 021051          194 AALFALRNHGGDEAVSAIIDS----LGA--TSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVN---EHP  253 (318)
Q Consensus       194 ~a~~~L~~~~~~~~~~~l~~~----l~d--~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~---~~~  253 (318)
                      ..+..+..+...+.++.+...    +.+  .+|..+.+++.++|.+.+           +.+++.|+.+..+..   ...
T Consensus       435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~  514 (1023)
T 4hat_C          435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKA  514 (1023)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchH
Confidence            445555555555565555443    333  689999999999999753           245677777775310   145


Q ss_pred             HHHHHHHHHHhccCC-----h----hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          254 MVRHEAAEALGSIAD-----D----QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       254 ~vr~~a~~aL~~~~~-----~----~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      .||..+++.+|++.+     +    ..+..|.+.+.++++.|...|++|+..+-.....+
T Consensus       515 ~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~  574 (1023)
T 4hat_C          515 VVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH  574 (1023)
T ss_dssp             HHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            677788899999863     3    35666666677888999999999999998877655

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=94.19  E-value=2  Score=42.49  Aligned_cols=123  Identities=15%  Similarity=0.198  Sum_probs=79.3

Q ss_pred             cCCCHHHHHHHHHHHhccCCC------CcHHHHHHhhhc-CCCCHHHHHHHHHHHHhcCC---------CCcHHHHHhhh
Q 021051           59 KDSSNLLAHEAAFALGQMQDA------EAIPALEAVLND-FSLHPIVRHEAAEALGAIGL---------ESNIPLLKNSL  122 (318)
Q Consensus        59 ~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l~~-~~~~~~vR~~a~~~L~~~~~---------~~~~~~L~~~l  122 (318)
                      .+.++..+.++++++|.+...      ..++.+.+.+.. .++++.+|..++.+++++..         +..++.|...+
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l  538 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL  538 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence            567899999999999987642      345666655531 14678999999999997642         34566666634


Q ss_pred             ccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC
Q 021051          123 VSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH  202 (318)
Q Consensus       123 ~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~  202 (318)
                       ++  +.|+..|+.++.++.+  .....+..      +          -+..+..|...+..++.+...+..++.+++.+
T Consensus       539 -~~--~~V~~~A~~al~~l~~--~~~~~l~p------~----------~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i  597 (963)
T 2x19_B          539 -GN--PELSVSSVSTLKKICR--ECKYDLPP------Y----------AANIVAVSQDVLMKQIHKTSQCMWLMQALGFL  597 (963)
T ss_dssp             -TC--GGGHHHHHHHHHHHHH--HTGGGCTT------T----------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             -CC--chHHHHHHHHHHHHHH--HHHHHHHh------h----------HHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence             44  7899999999999872  11110000      0          02244555666665444444687777777765

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=93.78  E-value=0.9  Score=45.11  Aligned_cols=116  Identities=14%  Similarity=0.122  Sum_probs=74.9

Q ss_pred             CCHHHHHHHHHHHHhcCCC------CcHHHHHhh---hc-cCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCccc
Q 021051           94 LHPIVRHEAAEALGAIGLE------SNIPLLKNS---LV-SDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSV  163 (318)
Q Consensus        94 ~~~~vR~~a~~~L~~~~~~------~~~~~L~~~---l~-~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~  163 (318)
                      .+|..|.+++.+++.++..      ..++.+...   +. +|+++.||..++++++++..|......   .+        
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~---~l--------  544 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA---YI--------  544 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------CH--------
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH---HH--------
Confidence            6899999999999998631      233444432   22 256999999999999999866543211   00        


Q ss_pred             CCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh----------hHHHHHHHHhCC--CCHHHHHHHHHHHh
Q 021051          164 DPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD----------EAVSAIIDSLGA--TSALLKHEVAYVLG  231 (318)
Q Consensus       164 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~----------~~~~~l~~~l~d--~~~~vr~~a~~~L~  231 (318)
                              +..++.|+..+ +  +.+  +..|..++.++...          ..+..+.+++..  .+...+..+..+++
T Consensus       545 --------~~vl~~l~~~l-~--~~v--~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~  611 (971)
T 2x1g_F          545 --------PPAINLLVRGL-N--SSM--SAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIG  611 (971)
T ss_dssp             --------HHHHHHHHHHH-H--SSC--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHh-C--hHH--HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence                    23567777777 3  444  88888888877531          222333344444  35778888888887


Q ss_pred             cc
Q 021051          232 QL  233 (318)
Q Consensus       232 ~~  233 (318)
                      .+
T Consensus       612 ~i  613 (971)
T 2x1g_F          612 KL  613 (971)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=93.35  E-value=0.36  Score=47.98  Aligned_cols=120  Identities=14%  Similarity=0.161  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHHHhccCCC------CcHHHHHHhhhc---CCCCHHHHHHHHHHHHhcC-----CCCc----HHHHHhhh
Q 021051           61 SSNLLAHEAAFALGQMQDA------EAIPALEAVLND---FSLHPIVRHEAAEALGAIG-----LESN----IPLLKNSL  122 (318)
Q Consensus        61 ~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l~~---~~~~~~vR~~a~~~L~~~~-----~~~~----~~~L~~~l  122 (318)
                      .++..+.+++.++|.+...      ..++.+.+++..   .++++.||..++.+++++.     .+..    ++.|...+
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l  555 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL  555 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            6788999999999998742      344555555421   1458999999999999864     2333    34455534


Q ss_pred             ccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC
Q 021051          123 VSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH  202 (318)
Q Consensus       123 ~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~  202 (318)
                        +  +.|+..|+.++.++.+  .....+...+                +.....+...+..++.+...+..++.+++.+
T Consensus       556 --~--~~v~~~A~~al~~l~~--~~~~~l~p~~----------------~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i  613 (971)
T 2x1g_F          556 --N--SSMSAQATLGLKELCR--DCQLQLKPYA----------------DPLLNACHASLNTGRMKNSDSVRLMFSIGKL  613 (971)
T ss_dssp             --H--SSCHHHHHHHHHHHHH--HCHHHHHHHH----------------HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHH
T ss_pred             --C--hHHHHHHHHHHHHHHH--HHHHhccccH----------------HHHHHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence              3  6799999999998871  1111000000                1234556666666544445677777777765

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=93.27  E-value=0.37  Score=46.07  Aligned_cols=126  Identities=16%  Similarity=0.033  Sum_probs=80.8

Q ss_pred             HHHHHHHHcCCCcChHHHHHHHHHHHhCCCh----------hHHHH-HHHHhCCCCHHHHHHHHHHHhccCC--------
Q 021051          175 VDMLREVLLGEEKGMYERYAALFALRNHGGD----------EAVSA-IIDSLGATSALLKHEVAYVLGQLQN--------  235 (318)
Q Consensus       175 ~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~----------~~~~~-l~~~l~d~~~~vr~~a~~~L~~~~~--------  235 (318)
                      +..+++.|.++++..  |..|+.+|+++...          ..+.. |..++.|++..||.+|+.+|+.+..        
T Consensus        36 i~Pll~~L~S~~~~~--r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           36 ILPVLKDLKSPDAKS--RTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             THHHHHHHSSSCCSH--HHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHcCCCCHHH--HHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            334666788988886  99999999998542          34443 4567899999999999999988742        


Q ss_pred             ----cchHHHHHHHHhccC------------CCH-------HHHH---HHHHHHhccC--------ChhhHHHHHHhhc-
Q 021051          236 ----KAASAALSDVLRNVN------------EHP-------MVRH---EAAEALGSIA--------DDQSIGLLKEFAK-  280 (318)
Q Consensus       236 ----~~~~~~L~~~l~~~~------------~~~-------~vr~---~a~~aL~~~~--------~~~~~~~L~~~l~-  280 (318)
                          .++++.|..++....            ...       .+-.   .++++|+...        ..+.++.|+..+. 
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence                235677777764310            000       1111   2333333322        2345666776542 


Q ss_pred             -C-CCHHHHHHHHHHHHhchhhhc
Q 021051          281 -D-PEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       281 -~-~~~~vr~~a~~aL~~l~~~~~  302 (318)
                       + ....++..|...|..+...+.
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~  217 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNL  217 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCH
Confidence             2 356899999999988877654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=93.26  E-value=2.4  Score=41.95  Aligned_cols=186  Identities=14%  Similarity=-0.027  Sum_probs=96.6

Q ss_pred             CCCHHHHHHHHHHHHhcC-CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHh--hhccCccccccccCCCCcccCCCCCC
Q 021051           93 SLHPIVRHEAAEALGAIG-LESNIPLLKNSLVSDPAQEVRETCELALERIEK--LKASGSDGSSMTERSPFMSVDPAAPA  169 (318)
Q Consensus        93 ~~~~~vR~~a~~~L~~~~-~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~  169 (318)
                      ++++..|..|-..|..+. .++....+...+.++.++.+|..|+..|.+.-.  |..-....                  
T Consensus        36 ~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~------------------   97 (963)
T 2x19_B           36 DPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQ------------------   97 (963)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGG------------------
T ss_pred             CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHH------------------
Confidence            456677777777666553 345555555544445567777777777765431  21100000                  


Q ss_pred             CCCccHHHHHHHHcC-CCcChHHHHHHHHHHHhC-------CChhHHHHHHHHhCC-----CCHHHHHHHHHHHhccCC-
Q 021051          170 SSCSSVDMLREVLLG-EEKGMYERYAALFALRNH-------GGDEAVSAIIDSLGA-----TSALLKHEVAYVLGQLQN-  235 (318)
Q Consensus       170 ~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~L~~~-------~~~~~~~~l~~~l~d-----~~~~vr~~a~~~L~~~~~-  235 (318)
                       ....-..|+..+.+ .+.+..+|.....++..+       ..++.++.+...+++     +++..+..++..|..+.+ 
T Consensus        98 -~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee  176 (963)
T 2x19_B           98 -YESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEE  176 (963)
T ss_dssp             -HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHH
Confidence             00112233444332 111234576666665543       345777888887765     244455555544432211 


Q ss_pred             ----------------------cchHHHHHHHHhccCCCHHHHHHHHHHHhcc---CC-----hhhHHHHHHhhcCCCHH
Q 021051          236 ----------------------KAASAALSDVLRNVNEHPMVRHEAAEALGSI---AD-----DQSIGLLKEFAKDPEPI  285 (318)
Q Consensus       236 ----------------------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~---~~-----~~~~~~L~~~l~~~~~~  285 (318)
                                            +...+.+...+.+..++..++..+++++...   +.     ...++.+.+.+.  ++.
T Consensus       177 ~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~  254 (963)
T 2x19_B          177 FQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSE  254 (963)
T ss_dssp             HTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STT
T ss_pred             HhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--Cch
Confidence                                  1233444555544332334777788777532   21     445666666664  455


Q ss_pred             HHHHHHHHHHhchh
Q 021051          286 VSQSCEVALSMLEY  299 (318)
Q Consensus       286 vr~~a~~aL~~l~~  299 (318)
                      ++..|+.++..+-.
T Consensus       255 ~~~~a~~~l~~i~~  268 (963)
T 2x19_B          255 LFDSSVEAIVNAIS  268 (963)
T ss_dssp             THHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc
Confidence            67777777776654

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=93.22  E-value=0.93  Score=36.51  Aligned_cols=120  Identities=6%  Similarity=-0.158  Sum_probs=77.5

Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHhccCC---CChHHHHHHhcc-CCCHHHHHHHHHHHhccC--CC-CcHHHHHHhhhc
Q 021051           19 KFLCDRLVDPTQPISERFRALFSLRNLKG---PGPRDALIRATK-DSSNLLAHEAAFALGQMQ--DA-EAIPALEAVLND   91 (318)
Q Consensus        19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~---~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~--~~-~~~~~L~~~l~~   91 (318)
                      +.+.++..++..  +.|..|+..++....   ++..+.+..++. -+++.+-...+.+++.+-  .+ ...+.+.+.+. 
T Consensus        58 ~~~~~L~~s~~~--E~r~la~~~l~~~~~~~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~~~~~i~~W~~-  134 (220)
T 2b6c_A           58 QEIEAYYQKTER--EYQYVAIDLALQNVQRFSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTELPTIFALFYG-  134 (220)
T ss_dssp             HHHHHHHTSSSH--HHHHHHHHHHHHTGGGCCHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGGHHHHHHHHTT-
T ss_pred             HHHHHHHcCchh--HHHHHHHHHHHHHHhhCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHHHHHHHHHHHc-
Confidence            445555666665  899999999986642   233333455554 345666665545454431  22 34567788888 


Q ss_pred             CCCCHHHHHHHHHHHHhcCC---CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           92 FSLHPIVRHEAAEALGAIGL---ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        92 ~~~~~~vR~~a~~~L~~~~~---~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                       +++..+|+.|+.++-....   ++.+-.+...+..|++..|+++..++|..++
T Consensus       135 -s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~  187 (220)
T 2b6c_A          135 -AENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYS  187 (220)
T ss_dssp             -CSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHT
T ss_pred             -CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence             8999999999886643322   2222223333668999999999999999887

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=92.69  E-value=0.27  Score=44.10  Aligned_cols=33  Identities=18%  Similarity=0.015  Sum_probs=15.8

Q ss_pred             CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 021051           13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG   47 (318)
Q Consensus        13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~   47 (318)
                      +.++++..+.++..|.+.  .+|..|++.|..++.
T Consensus        62 l~~~Ai~a~lDLcEDed~--~IR~qaik~Lp~~ck   94 (507)
T 3u0r_A           62 LADSAINAQLDLCEDEDV--SIRRQAIKELPQFAT   94 (507)
T ss_dssp             GHHHHHHHHHHHHTCSSH--HHHHHHHHHGGGGCC
T ss_pred             hHHHHHHHHHHHHhcccH--HHHHHHHHhhHHHhh
Confidence            344444445555554443  455555555544443

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=91.93  E-value=1.5  Score=35.55  Aligned_cols=120  Identities=13%  Similarity=-0.045  Sum_probs=68.8

Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHhccC---CCChHHHHHHhcc-CCCHHHHHHH-HHHHhccC--CCC-cHHHHHHhhh
Q 021051           19 KFLCDRLVDPTQPISERFRALFSLRNLK---GPGPRDALIRATK-DSSNLLAHEA-AFALGQMQ--DAE-AIPALEAVLN   90 (318)
Q Consensus        19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~---~~~~~~~L~~~l~-d~~~~vr~~a-~~aL~~~~--~~~-~~~~L~~~l~   90 (318)
                      +.+.++..++..  +.|..|+..+....   .++..+.+..++. .+++.+-... ...+|.+-  .+. ..+.+.+.+.
T Consensus        64 ~~~~~L~~~~~~--E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~~~~~l~~W~~  141 (232)
T 3jxy_A           64 IIIRELWDLPER--EFQAAALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIA  141 (232)
T ss_dssp             HHHHHHHTSSBH--HHHHHHHHHHHHTGGGCCGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGGGGGGTHHHHHH
T ss_pred             HHHHHHhcCcHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHHHHHHHHHHHhc
Confidence            345555555554  78888888776432   3345555656553 3455554333 23333221  223 5567777777


Q ss_pred             cCCCCHHHHHHHHHHHHhcC---CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           91 DFSLHPIVRHEAAEALGAIG---LESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        91 ~~~~~~~vR~~a~~~L~~~~---~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                        ++++.+|+.|+..+-...   ++...-.+...+..|++..|+++..++|..++
T Consensus       142 --s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~  194 (232)
T 3jxy_A          142 --SDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYA  194 (232)
T ss_dssp             --SSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred             --CCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence              788888887776653222   11122222333567888888888888888776

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=91.82  E-value=0.19  Score=50.28  Aligned_cols=122  Identities=16%  Similarity=0.117  Sum_probs=78.5

Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHhccCCC-----------ChHHHHHHhcc-----CCCHHHHHHHHHHHhccCC----
Q 021051           19 KFLCDRLVDPTQPISERFRALFSLRNLKGP-----------GPRDALIRATK-----DSSNLLAHEAAFALGQMQD----   78 (318)
Q Consensus        19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~-----------~~~~~L~~~l~-----d~~~~vr~~a~~aL~~~~~----   78 (318)
                      +.+.+.+.+++.+|..|..++.++|.+.+.           .+++.|..+..     |+...+|..++|.+|++..    
T Consensus       454 ~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~  533 (1023)
T 4hat_C          454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA  533 (1023)
T ss_dssp             HHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc
Confidence            444555566556799999999999997541           23444555544     2445677889999998752    


Q ss_pred             -C----CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC--------------CCcHHHHHhh---hccCCCHHHHHHHHH
Q 021051           79 -A----EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL--------------ESNIPLLKNS---LVSDPAQEVRETCEL  136 (318)
Q Consensus        79 -~----~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~--------------~~~~~~L~~~---l~~d~~~~vr~~a~~  136 (318)
                       +    ..+..|.+.+.  ++++.|...|+.++.++..              +..++.+...   ....-++.-+..+..
T Consensus       534 ~~~~L~~vl~~L~~~l~--~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lye  611 (1023)
T 4hat_C          534 HWNFLRTVILKLFEFMH--ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYK  611 (1023)
T ss_dssp             CHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence             2    33455555555  6789999999999877542              1133333221   223456777778888


Q ss_pred             HHHHHH
Q 021051          137 ALERIE  142 (318)
Q Consensus       137 aL~~~~  142 (318)
                      +++.+-
T Consensus       612 ai~~vi  617 (1023)
T 4hat_C          612 ACGIII  617 (1023)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888765

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=91.70  E-value=0.95  Score=39.71  Aligned_cols=65  Identities=15%  Similarity=0.123  Sum_probs=33.8

Q ss_pred             hHHHHHHHHhccCCCHHHHHHHHHHHhccC--Ch----hhHHHHHHhhcC-C-------CHHHHHHHHHHHHhchhhhc
Q 021051          238 ASAALSDVLRNVNEHPMVRHEAAEALGSIA--DD----QSIGLLKEFAKD-P-------EPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~----~~~~~L~~~l~~-~-------~~~vr~~a~~aL~~l~~~~~  302 (318)
                      .+..|+..+..+.-++..-.+.+.+|+.+.  .|    ..++.|..+-.. +       ...|++.....|-.+-.+.+
T Consensus       226 lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~  304 (386)
T 3o2t_A          226 ALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPA  304 (386)
T ss_dssp             HHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            456777777654334545556777777764  22    345555543211 1       13466666666665544433

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=91.22  E-value=2.4  Score=38.14  Aligned_cols=104  Identities=17%  Similarity=0.123  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhCC------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC----cchHHHHHHHHhccCCCHHHHH--
Q 021051          190 YERYAALFALRNHG------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN----KAASAALSDVLRNVNEHPMVRH--  257 (318)
Q Consensus       190 ~~r~~a~~~L~~~~------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~----~~~~~~L~~~l~~~~~~~~vr~--  257 (318)
                      .++.-|.+.+.++=      ..+++..+..+..|.+..||..|+..|..++.    +...++|.+++...  ++....  
T Consensus        43 k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtd--d~~E~~~V  120 (507)
T 3u0r_A           43 KEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTD--DSAEFNLV  120 (507)
T ss_dssp             HHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhcc--chHHHHHH
Confidence            45777878887662      25788889999999999999999999999875    34677888888754  554443  


Q ss_pred             -HHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 021051          258 -EAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALS  295 (318)
Q Consensus       258 -~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~  295 (318)
                       .++..|-.+.....+..|...+...++.+|..++.-|.
T Consensus       121 ~~sL~sllk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          121 NNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence             44444555555556777776555567788877777764

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=91.16  E-value=1.5  Score=36.17  Aligned_cols=58  Identities=14%  Similarity=0.122  Sum_probs=37.3

Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC------CCcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALGAIGL------ESNIPLLKNSLVSDPAQEVRETCELALERI  141 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~  141 (318)
                      .++.++++..  +++..+|++.+..+...+.      +..++.|.. +.+|+++.|.+.++.+...+
T Consensus        54 ~l~~il~~~~--~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~-Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           54 FLESVLSLAH--DSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSM-LLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             HHHHHHGGGG--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence            4455555544  6777777777777765542      124555666 55677888888888777744

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=90.29  E-value=1.2  Score=44.67  Aligned_cols=110  Identities=12%  Similarity=0.070  Sum_probs=71.8

Q ss_pred             HHHHHHhCCChhHHHHHHHH----hC--CCCHHHHHHHHHHHhccCCc-------chHHHHHHHHhc-------cCCCHH
Q 021051          195 ALFALRNHGGDEAVSAIIDS----LG--ATSALLKHEVAYVLGQLQNK-------AASAALSDVLRN-------VNEHPM  254 (318)
Q Consensus       195 a~~~L~~~~~~~~~~~l~~~----l~--d~~~~vr~~a~~~L~~~~~~-------~~~~~L~~~l~~-------~~~~~~  254 (318)
                      .+..+..++....++.+.+.    +.  ..+|..+..++.++|.+.+.       ..++.++..+..       ...++.
T Consensus       436 ~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~  515 (1049)
T 3m1i_C          436 VLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAV  515 (1049)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHH
Confidence            34444455555555554443    33  46899999999999988541       124444444321       001566


Q ss_pred             HHHHHHHHHhccC-----Ch----hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          255 VRHEAAEALGSIA-----DD----QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       255 vr~~a~~aL~~~~-----~~----~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      +|..+++.+|++.     .+    ..++.|...+.++++.|+..|+.|+.++-.....+
T Consensus       516 v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~  574 (1049)
T 3m1i_C          516 VASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH  574 (1049)
T ss_dssp             HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            7767999999775     22    34566666778889999999999999998765544

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=89.63  E-value=8.2  Score=38.81  Aligned_cols=126  Identities=9%  Similarity=-0.028  Sum_probs=77.8

Q ss_pred             CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-CChHHHHHHhcc-CCCHHHHHHHHHHHhccC--------CC---
Q 021051           13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-PGPRDALIRATK-DSSNLLAHEAAFALGQMQ--------DA---   79 (318)
Q Consensus        13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~--------~~---   79 (318)
                      ++-..++.++..+.++++  ..|..|-..|..+.. +++...+..+|. +.++.+|..|+..|...-        ..   
T Consensus        25 ~Dv~~Le~lv~~ly~p~~--~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~  102 (1073)
T 3gjx_A           25 LDINLLDNVVNCLYHGEG--AQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCE  102 (1073)
T ss_dssp             CSHHHHHHHHHTTTCSSH--HHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHH
Confidence            455688888888888876  789999999988864 677776667664 458999999999885421        00   


Q ss_pred             CcHHHHHHhhhc---C----CCCHHHHHHHHHHHHhc-------CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           80 EAIPALEAVLND---F----SLHPIVRHEAAEALGAI-------GLESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        80 ~~~~~L~~~l~~---~----~~~~~vR~~a~~~L~~~-------~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      ..-..|++++..   .    ..++.++.....+++.+       ..++.++.+...+ + .++..+......|..+.
T Consensus       103 ~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~-~-~~~~~~~~~L~IL~~L~  177 (1073)
T 3gjx_A          103 GIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGAS-R-TSESLCQNNMVILKLLS  177 (1073)
T ss_dssp             HHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH-H-HCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHh-C-CCHHHHHHHHHHHHHHH
Confidence            112333444331   0    13466666666666543       2456677777733 2 23445555555555554

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=88.01  E-value=3.8  Score=41.14  Aligned_cols=92  Identities=17%  Similarity=0.110  Sum_probs=50.4

Q ss_pred             ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC--------------------------cchHHHHHHHHhccCCCHHHHH
Q 021051          204 GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN--------------------------KAASAALSDVLRNVNEHPMVRH  257 (318)
Q Consensus       204 ~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~--------------------------~~~~~~L~~~l~~~~~~~~vr~  257 (318)
                      .++.++.+...++ .++..+..++.+|..+..                          +...+.+...+.+. .++.++.
T Consensus       136 Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~-~~~~~~~  213 (1049)
T 3m1i_C          136 WPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-SSSSLIV  213 (1049)
T ss_dssp             CTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred             chHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHH
Confidence            4567777777775 444444444444443221                          11233344455543 3678999


Q ss_pred             HHHHHHhccC---------ChhhHHHHHH-hhcCCCHHHHHHHHHHHHhchh
Q 021051          258 EAAEALGSIA---------DDQSIGLLKE-FAKDPEPIVSQSCEVALSMLEY  299 (318)
Q Consensus       258 ~a~~aL~~~~---------~~~~~~~L~~-~l~~~~~~vr~~a~~aL~~l~~  299 (318)
                      .+++++..+-         .+..++.+.+ ++  .++.+|..|+..|..+-.
T Consensus       214 ~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~  263 (1049)
T 3m1i_C          214 ATLESLLRYLHWIPYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSN  263 (1049)
T ss_dssp             HHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHh
Confidence            9999886531         1223444442 33  267778777777766543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=87.48  E-value=5.9  Score=34.71  Aligned_cols=75  Identities=17%  Similarity=0.150  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhcc---CCC----ChHHHHHHhccCCCHHHHHHHHHHHhccCC------CCcHHHHHHhhhcCCCCHHHH
Q 021051           33 SERFRALFSLRNL---KGP----GPRDALIRATKDSSNLLAHEAAFALGQMQD------AEAIPALEAVLNDFSLHPIVR   99 (318)
Q Consensus        33 ~~r~~A~~~l~~~---~~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~~~vR   99 (318)
                      ..+...++.+.++   .++    +..+.++++-.+++..+|...+.-|++.+.      ...++.|..++.  ++++.|.
T Consensus        40 ~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~--d~d~~V~  117 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLR--DENVNVV  117 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHT--CSSHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHH
Confidence            4677777776663   333    567777777778888899888888876552      245677777777  7888888


Q ss_pred             HHHHHHHHhc
Q 021051          100 HEAAEALGAI  109 (318)
Q Consensus       100 ~~a~~~L~~~  109 (318)
                      +.++.+.+.+
T Consensus       118 K~~I~~~tsl  127 (386)
T 3o2t_A          118 KKAILTMTQL  127 (386)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888754

>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25

Probab=87.06  E-value=0.34  Score=34.85  Aligned_cols=61  Identities=16%  Similarity=0.103  Sum_probs=48.3

Q ss_pred             hHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          238 ASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      ....|+.++.++  ++.||..|+.....+..+++.+.|..+.+.+.-.+.-.|..+|.++..+
T Consensus        58 ~R~aLl~Ll~H~--n~~VRl~AA~~~L~~~p~~A~~vLe~ia~~~~~~~~f~A~m~L~~we~G  118 (123)
T 2i9c_A           58 QRTALLSLFEYP--NMQVRLQAAKLTLAVAPVKAREQLEAIVSSKWFPQAGDAGMCLDLLDDG  118 (123)
T ss_dssp             GGGGGGGGGGSS--CHHHHHHHHHTTTTTCHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCC--CccHHHHHHHHHHhhChHHHHHHHHHHHhCCCCCccccHHHHHHHHHcC
Confidence            455688888887  8999998888888888888889888887776544667788888887665

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=85.86  E-value=4.5  Score=40.68  Aligned_cols=110  Identities=10%  Similarity=0.077  Sum_probs=72.3

Q ss_pred             HHHHHHhCCChhHHHHHHHHh----C--CCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccC--C-CHH
Q 021051          195 ALFALRNHGGDEAVSAIIDSL----G--ATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVN--E-HPM  254 (318)
Q Consensus       195 a~~~L~~~~~~~~~~~l~~~l----~--d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~--~-~~~  254 (318)
                      ++..+..++..+....+.+.+    +  ..+|....+++.++|.+..           +..++.|+.+...+.  + .+.
T Consensus       462 ~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~  541 (1073)
T 3gjx_A          462 TLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAI  541 (1073)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHH
Confidence            334455555555655555444    3  3469999999999998842           223444554443321  0 134


Q ss_pred             HHHHHHHHHhccC-----Ch----hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          255 VRHEAAEALGSIA-----DD----QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       255 vr~~a~~aL~~~~-----~~----~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      ++...+..+|++.     ++    ..+..|.+.+.++++.|...|+.|+..+......+
T Consensus       542 vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          542 IASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5555668999875     23    35666667778889999999999999999888876

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=85.54  E-value=11  Score=38.48  Aligned_cols=46  Identities=11%  Similarity=0.022  Sum_probs=29.5

Q ss_pred             CHHHHHHHHHHHhccC---------C--hhhHHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051          252 HPMVRHEAAEALGSIA---------D--DQSIGLLKEFAKDPEPIVSQSCEVALSMLEY  299 (318)
Q Consensus       252 ~~~vr~~a~~aL~~~~---------~--~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~  299 (318)
                      +..++..+++++..+-         .  ...++.+..++.+  +.+|..|+..|..+-.
T Consensus       220 ~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s  276 (1204)
T 3a6p_A          220 NCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVS  276 (1204)
T ss_dssp             HHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHh
Confidence            3457778888876431         1  1256666666654  5678888888887754

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=84.75  E-value=8.4  Score=31.66  Aligned_cols=103  Identities=15%  Similarity=0.067  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhcc---CCC----ChHHHHHHhccCCCHHHHHHHHHHHhccCC------CCcHHHHHHhhhcCCCCHHHH
Q 021051           33 SERFRALFSLRNL---KGP----GPRDALIRATKDSSNLLAHEAAFALGQMQD------AEAIPALEAVLNDFSLHPIVR   99 (318)
Q Consensus        33 ~~r~~A~~~l~~~---~~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~~~vR   99 (318)
                      ..+...++.+.++   +++    +..+.+.++-.+++..+|...+.-+.+...      ...++.|..++.  ++++.|.
T Consensus        30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~--d~d~~V~  107 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLR--DNSAQVI  107 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT--CSCHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHH
Confidence            5777777777663   233    344555555468899999999998877552      245778888888  8999999


Q ss_pred             HHHHHHHHhcCCCCcHHHHHhhhccCCC-HHHHHHHHHHHHHHH
Q 021051          100 HEAAEALGAIGLESNIPLLKNSLVSDPA-QEVRETCELALERIE  142 (318)
Q Consensus       100 ~~a~~~L~~~~~~~~~~~L~~~l~~d~~-~~vr~~a~~aL~~~~  142 (318)
                      +.++.+.+.     .++...+.+.++++ +.--..+...+..+.
T Consensus       108 K~~I~~~~~-----iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK  146 (257)
T 3gs3_A          108 KRVIQACGS-----IYKNGLQYLCSLMEPGDSAEQAWNILSLIK  146 (257)
T ss_dssp             HHHHHHHHH-----HHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-----HHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            999999885     44554443444432 222344555555443

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=83.69  E-value=3.1  Score=41.46  Aligned_cols=106  Identities=13%  Similarity=0.044  Sum_probs=68.0

Q ss_pred             HHHhccCCCCcHH----HHHHhhhc-----CCCCHHHHHHHHHHHHhcCCC------------C----cHHHHHhhhcc-
Q 021051           71 FALGQMQDAEAIP----ALEAVLND-----FSLHPIVRHEAAEALGAIGLE------------S----NIPLLKNSLVS-  124 (318)
Q Consensus        71 ~aL~~~~~~~~~~----~L~~~l~~-----~~~~~~vR~~a~~~L~~~~~~------------~----~~~~L~~~l~~-  124 (318)
                      ..+..++.....+    .+...+.+     .+.+|..+..++.+|+.++..            .    ..+.+.. +.+ 
T Consensus       423 d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~-ll~s  501 (980)
T 3ibv_A          423 DTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILAL-VTTS  501 (980)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHH-HHHS
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHH-HHhC
Confidence            3444455544555    45544431     135689999999998877632            1    2333443 322 


Q ss_pred             ----CCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHc------CCCcChHHHHH
Q 021051          125 ----DPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLL------GEEKGMYERYA  194 (318)
Q Consensus       125 ----d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~------~~~~~~~~r~~  194 (318)
                          +++|.||..+.+.++++.+|....+                       +.++.++..+-      +++..+  |..
T Consensus       502 ~i~~~~hp~V~~~~~~~l~rys~~~~~~~-----------------------~~l~~~L~~ll~~~gl~~~~~~V--~~~  556 (980)
T 3ibv_A          502 QVCRHPHPLVQLLYMEILVRYASFFDYES-----------------------AAIPALIEYFVGPRGIHNTNERV--RPR  556 (980)
T ss_dssp             STTTCCCHHHHHHHHHHHHHTGGGGGTCC-----------------------TTHHHHHHHHTSTTTTTCCCTTT--HHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHhcCc-----------------------hhHHHHHHHHhccccccCCChhH--HHH
Confidence                7899999999999999997754322                       24555555554      355554  888


Q ss_pred             HHHHHHhC
Q 021051          195 ALFALRNH  202 (318)
Q Consensus       195 a~~~L~~~  202 (318)
                      |.+++.++
T Consensus       557 a~~af~~f  564 (980)
T 3ibv_A          557 AWYLFYRF  564 (980)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998886

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=83.06  E-value=5.5  Score=29.06  Aligned_cols=56  Identities=16%  Similarity=0.002  Sum_probs=40.6

Q ss_pred             cHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 021051          174 SVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQ  232 (318)
Q Consensus       174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~  232 (318)
                      .++.|+..|+|-|+++  ...++..|..++ ...++.+.+.+++.|...+...+..+..
T Consensus        32 ~lp~LL~WLQD~NWPv--A~~i~~~L~~~~-~~l~p~I~~vl~s~D~~W~ywil~~lv~   87 (134)
T 3ut4_A           32 IIFDLLKWLQDYNWPI--AKDILPVVVLHQ-SIAMPHILTILQGNDIMWKYWVIKLMIP   87 (134)
T ss_dssp             HHHHHHGGGSCTTSTT--HHHHHHHHHHTH-HHHHHHHHHHHHSSCHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhcCCCcc--HHHHHHHHHHcc-HhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5677788888888886  666777777775 4677777777777777777777766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	318
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	9e-15
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	2e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	5e-05
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	5e-08
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	1e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	5e-04

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 71.0 bits (172), Expect = 9e-15
 Identities = 41/258 (15%), Positives = 83/258 (32%), Gaps = 20/258 (7%)

Query: 40  FSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVR 99
           + L N       D L R   D ++L    +A  L      +A+       +D +   I R
Sbjct: 10  YGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKN--YIRR 67

Query: 100 HEAAEALGAIGLES-----NIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDG--- 151
              A  LG I +          +L N  ++D +  VR T   +  +  K     S     
Sbjct: 68  DIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVE 127

Query: 152 ------SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD 205
                    +      +    +  +  +++ +L  +L      +    A    +  +   
Sbjct: 128 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 187

Query: 206 EAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGS 265
           +     ++ L   +  ++ E    L   ++K   + L D L+       V  +  EA G 
Sbjct: 188 DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NTVYDDIIEAAGE 243

Query: 266 IADDQSIGLLKEFAKDPE 283
           + D   + +L       +
Sbjct: 244 LGDKTLLPVLDTMLYKFD 261

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 232 QLQNKAASAALSDVLRNVN-EHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSC 290
            L N+       ++ R ++  + + R  +A  L       ++ L  EF  D   I     
Sbjct: 11  GLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIG 70

Query: 291 EVALSMLEYEQ 301
              L  ++  +
Sbjct: 71  AFILGQIKICK 81

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 75  QMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETC 134
             +D   +  L   L        V  +  EA G +G ++ +P+L   L      E+  + 
Sbjct: 214 YRKDKRVLSVLCDELKK----NTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSA 269

Query: 135 ELALER 140
              L+R
Sbjct: 270 IDKLKR 275

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 48.4 bits (114), Expect = 5e-08
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 3/103 (2%)

Query: 192 RYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNE 251
           R     AL   G DEA   +++SL      ++   A+++G  Q++ A   L       ++
Sbjct: 9   RRDVSTALSRMG-DEAFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIK--LLEDD 65

Query: 252 HPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVAL 294
              VR  AA +L  I  ++    +++ A+       +     L
Sbjct: 66  SGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYL 108

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 21/110 (19%), Positives = 32/110 (29%), Gaps = 31/110 (28%)

Query: 59  KDSSNLLAHEAAFALGQMQDAEAIPALEAVLND--------------------------- 91
            D +  +  + + AL +M D EA   L   L++                           
Sbjct: 2   ADENKWVRRDVSTALSRMGD-EAFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIK 60

Query: 92  --FSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALE 139
                   VR  AA +L  IG E     ++  L        R+     LE
Sbjct: 61  LLEDDSGFVRSGAARSLEQIGGERVRAAME-KLAETGTGFARKVAVNYLE 109

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 17/106 (16%)

Query: 52  DALIRATKDSSNLLAHEAAFALGQMQDA--------EAIPALEAVLNDFSLHPIVRHEAA 103
             ++  + D + L      F +  + +           +P +  +  D      VR   A
Sbjct: 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD--PVANVRFNVA 540

Query: 104 EALGAIG-------LESNIPLLKNSLVSDPAQEVRETCELALERIE 142
           ++L  IG       L+S +  +   L  D   +V+   + AL  + 
Sbjct: 541 KSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.9
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.82
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.64
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.63
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.6
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.54
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.52
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.5
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.46
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.45
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.41
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.35
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.34
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.22
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.03
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.97
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.96
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	98.96
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.95
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.86
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.8
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.67
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.6
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.59
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.59
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.51
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.45
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.04
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.95
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.77
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	95.06
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	92.9
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	90.06
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	82.43
d1l5ja1	160	Aconitase B, N-terminal domain {Escherichia coli [	82.04
d2i9ca1	121	Hypothetical protein RPA1889 {Rhodopseudomonas pal	81.75
d1t06a_	235	Hypothetical protein BC3264 {Bacillus cereus (stra	80.68

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.1e-22  Score=168.30  Aligned_cols=242  Identities=19%  Similarity=0.194  Sum_probs=202.0

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCc-----HHHHHH-hh
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEA-----IPALEA-VL   89 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~-----~~~L~~-~l   89 (318)
                      ...+.|+++|.|+++  .+|..|+..|+.++++.+++.|.++++|+++.+|..|+.+|+.++....     .+.+.. ++
T Consensus        19 ~~~~~L~~~L~d~~~--~vR~~A~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~l~~~~l   96 (276)
T d1oyza_          19 LNDDELFRLLDDHNS--LKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMAL   96 (276)
T ss_dssp             SCHHHHHHHTTCSSH--HHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhcCCCH--HHHHHHHHHHHhhCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccchHHHHHHHHh
Confidence            356789999999987  9999999999999999999999999999999999999999999885432     233444 44


Q ss_pred             hcCCCCHHHHHHHHHHHHhcCCC------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCccc
Q 021051           90 NDFSLHPIVRHEAAEALGAIGLE------SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSV  163 (318)
Q Consensus        90 ~~~~~~~~vR~~a~~~L~~~~~~------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~  163 (318)
                      .  ++++.||..++.+|+.++..      ..++.+.. ...|+++.||..++.+++.++                     
T Consensus        97 ~--d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~l~~-~~~d~~~~vr~~a~~~l~~~~---------------------  152 (276)
T d1oyza_          97 N--DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQI-TAFDKSTNVRRATAFAISVIN---------------------  152 (276)
T ss_dssp             H--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH-HTTCSCHHHHHHHHHHHHTC----------------------
T ss_pred             c--CCChhHHHHHHHHHHHHccccchhhHHHHHHHHH-HhcCcchHHHHHHHHHHhhcc---------------------
Confidence            5  89999999999999987632      24556666 568999999999999998766                     


Q ss_pred             CCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC--CChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHH
Q 021051          164 DPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH--GGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAA  241 (318)
Q Consensus       164 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~--~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~  241 (318)
                             .....+.+..++.+.+...  +..+..+++..  +.....+.+...+.+.++.++..++.+++.++++.+++.
T Consensus       153 -------~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  223 (276)
T d1oyza_         153 -------DKATIPLLINLLKDPNGDV--RNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSV  223 (276)
T ss_dssp             ---------CCHHHHHHHHTCSSHHH--HHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             -------hHHHHHHHHHhcccccchh--hhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHH
Confidence                   2346888888888777664  77776666554  556777888889999999999999999999999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcC-CCHHHHHHHHHHHHh
Q 021051          242 LSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKD-PEPIVSQSCEVALSM  296 (318)
Q Consensus       242 L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~-~~~~vr~~a~~aL~~  296 (318)
                      |++.+.++    .||..++++|+.+|++.+++.|.+++.+ ++..||..|+.+|.+
T Consensus       224 L~~~l~d~----~vr~~a~~aL~~ig~~~~~~~L~~~l~~~~d~~vr~~A~~~L~k  275 (276)
T d1oyza_         224 LCDELKKN----TVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKR  275 (276)
T ss_dssp             HHHHHTSS----SCCHHHHHHHHHHCCGGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             HHHHhCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHccCCCHHHHHHHHHHHcc
Confidence            99999753    4999999999999999999999998776 578999999999864

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=8.8e-19  Score=147.50  Aligned_cols=225  Identities=20%  Similarity=0.163  Sum_probs=185.7

Q ss_pred             CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCc-----HHHHHhhh
Q 021051           48 PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESN-----IPLLKNSL  122 (318)
Q Consensus        48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~-----~~~L~~~l  122 (318)
                      ....+.|+++|+|+++.||..|+..|+.++...+++.|..+++  ++++.||..|+.+|+.++....     .+.+...+
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~~~~~~~l~~~l~--d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~l~~~~   95 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCS--DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA   95 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHT--CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhccccccccchHHHHHHHH
Confidence            4678899999999999999999999999999899999999999  9999999999999999975432     34455557


Q ss_pred             ccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC
Q 021051          123 VSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH  202 (318)
Q Consensus       123 ~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~  202 (318)
                      .+|+++.||..++.+|++++. .....                     .+..++.+...+.++++.  +|..++.+++.+
T Consensus        96 l~d~~~~vr~~a~~aL~~~~~-~~~~~---------------------~~~~~~~l~~~~~d~~~~--vr~~a~~~l~~~  151 (276)
T d1oyza_          96 LNDKSACVRATAIESTAQRCK-KNPIY---------------------SPKIVEQSQITAFDKSTN--VRRATAFAISVI  151 (276)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHH-HCGGG---------------------HHHHHHHHHHHTTCSCHH--HHHHHHHHHHTC
T ss_pred             hcCCChhHHHHHHHHHHHHcc-ccchh---------------------hHHHHHHHHHHhcCcchH--HHHHHHHHHhhc
Confidence            789999999999999998871 11000                     022466677777676654  599999999999


Q ss_pred             CChhHHHHHHHHhCCCCHHHHHHHHHHHhccC--CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhc
Q 021051          203 GGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ--NKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAK  280 (318)
Q Consensus       203 ~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~  280 (318)
                      ++...++.+..++.+.++.++..+..+++.+.  .....+.+...+.+.  ++.+|..++.+++.++++.+++.|.+.+.
T Consensus       152 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~al~~~~~~~~~~~L~~~l~  229 (276)
T d1oyza_         152 NDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRKDKRVLSVLCDELK  229 (276)
T ss_dssp             ---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTTCGGGHHHHHHHHT
T ss_pred             chHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhh--hhhhhhhhccccchhhhhhhHHHHHHHhC
Confidence            99999999999999999999998888877644  456677788888876  89999999999999999999999999988


Q ss_pred             CCCHHHHHHHHHHHHhchhhhc
Q 021051          281 DPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       281 ~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      ++  .||..++.+|+.++..+.
T Consensus       230 d~--~vr~~a~~aL~~ig~~~~  249 (276)
T d1oyza_         230 KN--TVYDDIIEAAGELGDKTL  249 (276)
T ss_dssp             SS--SCCHHHHHHHHHHCCGGG
T ss_pred             Ch--HHHHHHHHHHHHcCCHHH
Confidence            64  489999999999986654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.64  E-value=9.6e-17  Score=116.43  Aligned_cols=110  Identities=21%  Similarity=0.309  Sum_probs=101.8

Q ss_pred             HcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHH
Q 021051          182 LLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAE  261 (318)
Q Consensus       182 l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~  261 (318)
                      |.|+++.+  |..|+.+|++++.+ +++.|++.++|+++.+|..|+.+||.++++.+++.|...+.|+  ++.||.+|++
T Consensus         1 L~D~~~~V--R~~A~~aL~~~~~~-~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~d~--~~~VR~~a~~   75 (111)
T d1te4a_           1 MADENKWV--RRDVSTALSRMGDE-AFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDD--SGFVRSGAAR   75 (111)
T ss_dssp             CCSSCCCS--SSSCCSSTTSCSST-THHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHC--CTHHHHHHHH
T ss_pred             CCCcCHHH--HHHHHHHHHHhCHH-HHHHHHHHHcCCCHHHHHHHHHHHHhcchhhhHHHHHhhhccc--hhHHHHHHHH
Confidence            35667765  99999999999865 7888999999999999999999999999999999999999987  8999999999


Q ss_pred             HHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHh
Q 021051          262 ALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSM  296 (318)
Q Consensus       262 aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~  296 (318)
                      +|+.+|++.+++.|..+++++++.||..|+.+|..
T Consensus        76 aL~~i~~~~~~~~L~~ll~d~~~~vr~~A~~aL~t  110 (111)
T d1te4a_          76 SLEQIGGERVRAAMEKLAETGTGFARKVAVNYLET  110 (111)
T ss_dssp             HHHHHCSHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHhCccchHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999875

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.2e-16  Score=143.84  Aligned_cols=253  Identities=16%  Similarity=0.153  Sum_probs=165.3

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhccCCCHHHHHHHHHHHhccC----C--
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATKDSSNLLAHEAAFALGQMQ----D--   78 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~--   78 (318)
                      .++.+...+.|+++  .+|..|+..++.+..            +...+.+...+.|.++.+|..++..++.+.    .  
T Consensus       282 l~~~l~~ll~d~~~--~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~  359 (588)
T d1b3ua_         282 LVPAFQNLMKDCEA--EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN  359 (588)
T ss_dssp             HHHHHHHHHTCSSH--HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH
T ss_pred             hhHHHHHHHhccch--HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhH
Confidence            34455555665554  666666665544321            133444444555666666666665555432    1  


Q ss_pred             --CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC--------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 021051           79 --AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL--------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG  148 (318)
Q Consensus        79 --~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~  148 (318)
                        ...++.+..++.  ++++.+|..++..++.+..        +..++.+.. +.+|+++.+|..++..++.+.... +.
T Consensus       360 ~~~~l~p~l~~~l~--d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~-~~~d~~~~~r~~~~~~l~~l~~~~-~~  435 (588)
T d1b3ua_         360 TIEHLLPLFLAQLK--DECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE-LAEDAKWRVRLAIIEYMPLLAGQL-GV  435 (588)
T ss_dssp             HHHHTHHHHHHHHT--CSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHH-CG
T ss_pred             HHHHHHHHHHHHHH--hhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHc-Ch
Confidence              123455555565  6666666666665554321        123344555 446777777777777776665100 00


Q ss_pred             ccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----CC----hhHHHHHHHHhCCCCH
Q 021051          149 SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----GG----DEAVSAIIDSLGATSA  220 (318)
Q Consensus       149 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~~----~~~~~~l~~~l~d~~~  220 (318)
                               ..+          .+...+.+...+.|+...  +|..|+.+++.+    |.    ...++.+.+.++++++
T Consensus       436 ---------~~~----------~~~l~~~l~~~l~D~~~~--VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~  494 (588)
T d1b3ua_         436 ---------EFF----------DEKLNSLCMAWLVDHVYA--IREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY  494 (588)
T ss_dssp             ---------GGC----------CHHHHHHHHHGGGCSSHH--HHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCH
T ss_pred             ---------HhH----------HHHHHHHHHhhccCCchh--HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCH
Confidence                     000          123567777888777765  599999998877    32    2455777778899999


Q ss_pred             HHHHHHHHHHhccCC--------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC--------hhhHHHHHHhhcCCCH
Q 021051          221 LLKHEVAYVLGQLQN--------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD--------DQSIGLLKEFAKDPEP  284 (318)
Q Consensus       221 ~vr~~a~~~L~~~~~--------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~  284 (318)
                      .+|..++.+++.+..        +..+|.|.+.+.|+  .++||..++++|+.++.        ....+.|.++.+|++.
T Consensus       495 ~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~--v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~L~~D~d~  572 (588)
T d1b3ua_         495 LHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV  572 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHcCCCCH
Confidence            999999999887753        45788899999887  89999999999999864        2456778888899999


Q ss_pred             HHHHHHHHHHHhch
Q 021051          285 IVSQSCEVALSMLE  298 (318)
Q Consensus       285 ~vr~~a~~aL~~l~  298 (318)
                      +||..|..||..+.
T Consensus       573 dVr~~A~~al~~l~  586 (588)
T d1b3ua_         573 DVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998774

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.60  E-value=1e-16  Score=116.24  Aligned_cols=109  Identities=22%  Similarity=0.242  Sum_probs=101.5

Q ss_pred             hcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHH
Q 021051           25 LVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAE  104 (318)
Q Consensus        25 L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~  104 (318)
                      |.|+++  .+|..|++.|+.+++ +.++.|++.|+|+++.+|..|+++||.++...+++.|.+++.  |+++.||..|+.
T Consensus         1 L~D~~~--~VR~~A~~aL~~~~~-~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~--d~~~~VR~~a~~   75 (111)
T d1te4a_           1 MADENK--WVRRDVSTALSRMGD-EAFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLE--DDSGFVRSGAAR   75 (111)
T ss_dssp             CCSSCC--CSSSSCCSSTTSCSS-TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHH--HCCTHHHHHHHH
T ss_pred             CCCcCH--HHHHHHHHHHHHhCH-HHHHHHHHHHcCCCHHHHHHHHHHHHhcchhhhHHHHHhhhc--cchhHHHHHHHH
Confidence            567776  899999999999986 678899999999999999999999999999899999999999  899999999999


Q ss_pred             HHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051          105 ALGAIGLESNIPLLKNSLVSDPAQEVRETCELALE  139 (318)
Q Consensus       105 ~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~  139 (318)
                      +|+.++++...+.|.. +.+|+++.||..|+.+|.
T Consensus        76 aL~~i~~~~~~~~L~~-ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          76 SLEQIGGERVRAAMEK-LAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHCSHHHHHHHHH-HTTSCCTHHHHHHHHHGG
T ss_pred             HHHHhCccchHHHHHH-HHcCCCHHHHHHHHHHHH
Confidence            9999999999999999 778999999999999875

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.3e-13  Score=122.70  Aligned_cols=259  Identities=20%  Similarity=0.183  Sum_probs=175.1

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccC---C---------CChHHHHHHhccC-CCHHHHHHHHHHHhccCC--
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLK---G---------PGPRDALIRATKD-SSNLLAHEAAFALGQMQD--   78 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~---~---------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~--   78 (318)
                      ...+++.+++.|.++++  ..+..|+..+.++.   .         ...++.|+++|++ +++.+|..++++|+.+..  
T Consensus        11 ~~~~i~~lv~~l~s~~~--~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~   88 (434)
T d1q1sc_          11 VNWSVEDIVKGINSNNL--ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT   88 (434)
T ss_dssp             SSCCHHHHHHHHTSSCH--HHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC
T ss_pred             hhhhHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence            34467777777777765  77777777765431   1         2356677777743 456777777777766531  


Q ss_pred             ---------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCc------------------------
Q 021051           79 ---------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESN------------------------  114 (318)
Q Consensus        79 ---------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~------------------------  114 (318)
                               ...++.|..++.  ++++.++..|+.+|+++..           .+.                        
T Consensus        89 ~~~~~~i~~~~~i~~l~~~L~--~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  166 (434)
T d1q1sc_          89 SEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL  166 (434)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred             hhhhhHhhhccchhhhhhccc--cCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHH
Confidence                     245677777777  6677777777777766431           112                        


Q ss_pred             -----------------------HHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCC
Q 021051          115 -----------------------IPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASS  171 (318)
Q Consensus       115 -----------------------~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  171 (318)
                                             ++.|.. +.+++++.++..+++++..+..  +. ......              ...
T Consensus       167 ~~~l~~~~~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~~~~~a~~~l~~l~~--~~-~~~~~~--------------~~~  228 (434)
T d1q1sc_         167 TWTLSNLCRNKNPAPPLDAVEQILPTLVR-LLHHNDPEVLADSCWAISYLTD--GP-NERIEM--------------VVK  228 (434)
T ss_dssp             HHHHHHHTCCCTTCCCHHHHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHTS--SC-HHHHHH--------------HHT
T ss_pred             HHHHHHHhhcccccchhhhhhhHHHHHHH-HHhccccchhhhHHhhhcccch--hh-hhhHHH--------------Hhh
Confidence                                   233444 3345556666666666655540  00 000000              002


Q ss_pred             CccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--h---------hHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----
Q 021051          172 CSSVDMLREVLLGEEKGMYERYAALFALRNHGG--D---------EAVSAIIDSLGATSALLKHEVAYVLGQLQN-----  235 (318)
Q Consensus       172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----  235 (318)
                      ...++.|++++.+++..+  +..++.+++++..  +         ..++.+.++++++++.++..++.+|+.+..     
T Consensus       229 ~~~~~~Lv~ll~~~~~~~--~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  306 (434)
T d1q1sc_         229 KGVVPQLVKLLGATELPI--VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ  306 (434)
T ss_dssp             TTCHHHHHHHHTCSCHHH--HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cccchhcccccccchhhh--hhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchh
Confidence            347899999998887765  8899999988743  1         334557778899999999999999998753     


Q ss_pred             ------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---Ch---------hhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051          236 ------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---DD---------QSIGLLKEFAKDPEPIVSQSCEVALSML  297 (318)
Q Consensus       236 ------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~~---------~~~~~L~~~l~~~~~~vr~~a~~aL~~l  297 (318)
                            ...++.++..+.+.  ++.+|..++++++++.   ++         ++++.|.+++.++++.++..+..+|..+
T Consensus       307 ~~~i~~~~~i~~li~~l~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~l  384 (434)
T d1q1sc_         307 IQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI  384 (434)
T ss_dssp             HHHHHHTTCHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhHHHHHHHHhcc--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence                  34678899999887  8999999999999873   22         3478889999999999999999999876


Q ss_pred             h
Q 021051          298 E  298 (318)
Q Consensus       298 ~  298 (318)
                      -
T Consensus       385 l  385 (434)
T d1q1sc_         385 F  385 (434)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.9e-14  Score=132.38  Aligned_cols=121  Identities=17%  Similarity=0.158  Sum_probs=95.7

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccCCCHHHHHHHHHHHhccCC--------CC
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKDSSNLLAHEAAFALGQMQD--------AE   80 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~   80 (318)
                      ..+.+.+++.|+++  .+|..++..++.+..        +...+.+..+++|+++.+|..++.+++.+..        ..
T Consensus       165 l~~~~~~l~~D~~~--~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  242 (588)
T d1b3ua_         165 LRQYFRNLCSDDTP--MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL  242 (588)
T ss_dssp             HHHHHHHHHTCSCH--HHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHhccCCH--HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHH
Confidence            45567777888886  999999999987643        2456667777799999999999999987642        12


Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALGAIG--------LESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      .++.+..++.  |+++.||..++.+|+.+.        ....++.+.. +.+|+++.||..++.+++.+.
T Consensus       243 i~~~l~~~~~--D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-ll~d~~~~vr~~a~~~l~~~~  309 (588)
T d1b3ua_         243 VMPTLRQAAE--DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN-LMKDCEAEVRAAASHKVKEFC  309 (588)
T ss_dssp             THHHHHHHHT--CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHH-HHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcc--cccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHH-HHhccchHHHHHHHHHHHHHH
Confidence            4677777777  899999999999988764        1356778888 668999999999999998876

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1.4e-12  Score=118.70  Aligned_cols=261  Identities=17%  Similarity=0.204  Sum_probs=202.6

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhcc-CCCHHHHHHHHHHHhccCC----
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATK-DSSNLLAHEAAFALGQMQD----   78 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----   78 (318)
                      +.++.+...+.+++.  ..+..|+..+.++-.            ...++.|++++. +.++.++..|+++|+.+..    
T Consensus        76 ~~l~~~~~~~~s~~~--~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~  153 (503)
T d1wa5b_          76 QELPQMTQQLNSDDM--QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  153 (503)
T ss_dssp             CCHHHHHHHHSCSSH--HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence            457778888888876  888999998876432            246788888886 5578899999999998763    


Q ss_pred             -------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHH
Q 021051           79 -------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALER  140 (318)
Q Consensus        79 -------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~  140 (318)
                             ...++.|..++.  +++..++..++.+|+++..           ...++.|.. +..+.++.++..+.+++.+
T Consensus       154 ~~~~~~~~g~i~~l~~lL~--s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~-ll~~~~~~~~~~~~~~l~n  230 (503)
T d1wa5b_         154 QTKVVVDADAVPLFIQLLY--TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG-LFNSNKPSLIRTATWTLSN  230 (503)
T ss_dssp             HHHHHHHTTCHHHHHHHHH--HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH-GGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHhc--CCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchh-hcccCCHHHHHHHHHHHHH
Confidence                   256899999999  7899999999999998742           246788888 6678899999999999998


Q ss_pred             HHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC--C---------hhHHH
Q 021051          141 IEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG--G---------DEAVS  209 (318)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--~---------~~~~~  209 (318)
                      +.........         +.        .....++.|...+.+.++..  +..++.++..+.  .         ...++
T Consensus       231 l~~~~~~~~~---------~~--------~~~~~l~~l~~~l~~~d~~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  291 (503)
T d1wa5b_         231 LCRGKKPQPD---------WS--------VVSQALPTLAKLIYSMDTET--LVDACWAISYLSDGPQEAIQAVIDVRIPK  291 (503)
T ss_dssp             HHCCSSSCCC---------HH--------HHGGGHHHHHHHTTCCCHHH--HHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred             HhcCCccchH---------HH--------HHHHHHHHHHHHhccccHHH--HHHHHHHHHhhccCCchhhhhhhhhhhhh
Confidence            8710000000         00        01346888999998887765  888888888763  2         24556


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC--C--------
Q 021051          210 AIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA--D--------  268 (318)
Q Consensus       210 ~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~--------  268 (318)
                      .+..++.++++.++..++.+++.+..           ...++.|..++.+.  ++.+|..++++|+++.  +        
T Consensus       292 ~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~i~~~~~~~l~nl~~~~~~~~~~i~  369 (503)
T d1wa5b_         292 RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNITAGNTEQIQAVI  369 (503)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             hhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC--CHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            77888899999999999999998753           34578888888876  8999999999999985  2        


Q ss_pred             -hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          269 -DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       269 -~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                       .+.++.+...+.+.+..++.+|+++|..+-....
T Consensus       370 ~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~  404 (503)
T d1wa5b_         370 DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL  404 (503)
T ss_dssp             HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HccccchhHHhcccCChhHHHHHHHHHHHHHhccc
Confidence             3457888888888999999999999999876543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=3e-12  Score=116.43  Aligned_cols=258  Identities=17%  Similarity=0.162  Sum_probs=199.7

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------   78 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------   78 (318)
                      ..++.|+.+|.++. +..++..|+++|..+..           ...++.+..++.+++..++..++++|+.+..      
T Consensus       119 g~i~~Lv~~l~~~~-~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r  197 (503)
T d1wa5b_         119 GVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  197 (503)
T ss_dssp             TCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CChHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHH
Confidence            35778889998655 34789999999988754           3578889999999999999999999998653      


Q ss_pred             -----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           79 -----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        79 -----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                           ...++.|..++.  +.++.++..++.+|..+..           ...++.|.. +..+.++.++..+++++..+.
T Consensus       198 ~~l~~~~~~~~L~~ll~--~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~-~l~~~d~~~~~~~~~~l~~l~  274 (503)
T d1wa5b_         198 DYVLQCNAMEPILGLFN--SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK-LIYSMDTETLVDACWAISYLS  274 (503)
T ss_dssp             HHHHHTTCHHHHHHGGG--SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHH-HTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccccchhhcc--cCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHhhc
Confidence                 246888999999  7888899888888887631           135677888 667889999999999999886


Q ss_pred             hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHH
Q 021051          143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAI  211 (318)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l  211 (318)
                      .  .........+               ....++.+..++.+++..+  +..++.+++++..           ...++.+
T Consensus       275 ~--~~~~~~~~~~---------------~~~~~~~l~~ll~~~~~~v--~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l  335 (503)
T d1wa5b_         275 D--GPQEAIQAVI---------------DVRIPKRLVELLSHESTLV--QTPALRAVGNIVTGNDLQTQVVINAGVLPAL  335 (503)
T ss_dssp             S--SCHHHHHHHH---------------HTTCHHHHHHGGGCSCHHH--HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred             c--CCchhhhhhh---------------hhhhhhhhhhcccCCchhh--hhhHHHHHHHHHHHHHHHHHhhhccchHHHH
Confidence            1  0000000000               1236888999998887764  8899999988743           2456778


Q ss_pred             HHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---C---------
Q 021051          212 IDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---D---------  268 (318)
Q Consensus       212 ~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~---------  268 (318)
                      ..++.++++.++..++.+++.+..           ...++.++..+.+.  ++.++.+++++|.++.   .         
T Consensus       336 ~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~l  413 (503)
T d1wa5b_         336 RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA--EYKTKKEACWAISNASSGGLQRPDIIRYL  413 (503)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTTTCTHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccC--ChhHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            888899999999999999998742           45678899999877  8999999999998873   1         


Q ss_pred             --hhhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051          269 --DQSIGLLKEFAKDPEPIVSQSCEVALSMLE  298 (318)
Q Consensus       269 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~  298 (318)
                        .++++.|..++...+..+...+..+|.++-
T Consensus       414 ~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll  445 (503)
T d1wa5b_         414 VSQGCIKPLCDLLEIADNRIIEVTLDALENIL  445 (503)
T ss_dssp             HHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence              235677888888889999899898888764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.7e-13  Score=121.14  Aligned_cols=263  Identities=17%  Similarity=0.096  Sum_probs=198.9

Q ss_pred             CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhcc-CCCHHHHHHHHHHHhccCC--
Q 021051           13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATK-DSSNLLAHEAAFALGQMQD--   78 (318)
Q Consensus        13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~--   78 (318)
                      +...+++.|.++|++++.  .+|..|+..++.+..           +..++.|.+.|. ..++.++..++.+|..+..  
T Consensus        14 ~~~~aip~L~~lL~~~~~--~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~   91 (529)
T d1jdha_          14 LATRAIPELTKLLNDEDQ--VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   91 (529)
T ss_dssp             ---CHHHHHHHHHTCSCH--HHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc
Confidence            445679999999999886  899999999988753           246888888885 4678999999999988763  


Q ss_pred             --------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051           79 --------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALE  139 (318)
Q Consensus        79 --------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~  139 (318)
                              ...++.|+.+|.  ++++.++..|+.+|+++.           ..+.++.|.. +++++++.++..++.++.
T Consensus        92 ~~~~~i~~~g~i~~Li~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~  168 (529)
T d1jdha_          92 EGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQ  168 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH-GGGCCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHCCCHHHHHHHhC--CCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHH-HHHccChHHHHHHHHHHH
Confidence                    256899999999  899999999999998763           2346788999 668899999999999999


Q ss_pred             HHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHH
Q 021051          140 RIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVS  209 (318)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~  209 (318)
                      .+. ....... ...               .....++.|..++.+.+.. .++..+..++.++..          ...++
T Consensus       169 ~l~-~~~~~~~-~~~---------------~~~~~~~~L~~ll~~~~~~-~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~  230 (529)
T d1jdha_         169 ILA-YGNQESK-LII---------------LASGGPQALVNIMRTYTYE-KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ  230 (529)
T ss_dssp             HHH-TTCHHHH-HHH---------------HHTTHHHHHHHHHHHCCCH-HHHHHHHHHHHHHTTSTTHHHHHHHTTHHH
T ss_pred             HHh-hhhhHHH-HHH---------------HhcccchHHHHHHHhhhhH-HHHHHHHHHHhhhhccccccchhhhhhhhh
Confidence            887 1100000 000               0123678888888765543 357788888877643          24667


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHhccCC--------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC-----------hh
Q 021051          210 AIIDSLGATSALLKHEVAYVLGQLQN--------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD-----------DQ  270 (318)
Q Consensus       210 ~l~~~l~d~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----------~~  270 (318)
                      .+...+.+++..++..++.++..+.+        ...++.|++++.+.  ++.++..++.+|+.+..           .+
T Consensus       231 ~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~  308 (529)
T d1jdha_         231 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQVG  308 (529)
T ss_dssp             HHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred             hHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccc--cHHHHHHHHHHHHhhccchhHHHHHHHHhh
Confidence            78888889999999999999876542        35689999999876  89999999999999852           13


Q ss_pred             hHHHHHHhh--cCCCHHHHHHHHHHHHhchhh
Q 021051          271 SIGLLKEFA--KDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       271 ~~~~L~~~l--~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      .++.|...+  ..+.+.++..+..+|..+...
T Consensus       309 ~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~  340 (529)
T d1jdha_         309 GIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             hHHHHHHHHHhhhcchhHHHHHHHHhhcccch
Confidence            466677655  346788999999999887644

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.45  E-value=5.4e-15  Score=120.23  Aligned_cols=184  Identities=21%  Similarity=0.164  Sum_probs=137.0

Q ss_pred             HhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHH
Q 021051           23 DRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEA  102 (318)
Q Consensus        23 ~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a  102 (318)
                      .+|.|+.  |++|..|.+.       ..+..|..+++|+++.||..+++.|+       .+.|..++.  |+++.||..+
T Consensus        49 ~~l~~p~--~e~Ra~Aa~~-------a~~~~L~~Ll~D~d~~VR~~AA~~Lp-------~~~L~~L~~--D~d~~VR~~a  110 (233)
T d1lrva_          49 QYLADPF--WERRAIAVRY-------SPVEALTPLIRDSDEVVRRAVAYRLP-------REQLSALMF--DEDREVRITV  110 (233)
T ss_dssp             GGTTCSS--HHHHHHHHTT-------SCGGGGGGGTTCSSHHHHHHHHTTSC-------SGGGGGTTT--CSCHHHHHHH
T ss_pred             HHhcCCc--HHHHHHHHhc-------CCHHHHHHHhcCCCHHHHHHHHHHcC-------HHHHHHHhc--CCChhHHHHH
Confidence            4677775  5999777642       44778888999999999999998664       256777777  9999999999


Q ss_pred             HHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHH
Q 021051          103 AEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVL  182 (318)
Q Consensus       103 ~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l  182 (318)
                      +..|.       .+.|.. +.+|+++.||..++..+   .                                .+.|..++
T Consensus       111 a~~l~-------~~~L~~-Ll~D~d~~VR~~aa~~~---~--------------------------------~~~L~~L~  147 (233)
T d1lrva_         111 ADRLP-------LEQLEQ-MAADRDYLVRAYVVQRI---P--------------------------------PGRLFRFM  147 (233)
T ss_dssp             HHHSC-------TGGGGG-GTTCSSHHHHHHHHHHS---C--------------------------------GGGGGGTT
T ss_pred             HhccC-------HHHHHH-HhcCCCHHHHHHHHhcc---c--------------------------------hhHHHHHh
Confidence            87652       345666 77899999999887542   2                                22344556


Q ss_pred             cCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHH
Q 021051          183 LGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEA  262 (318)
Q Consensus       183 ~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~a  262 (318)
                      .+++..  ||..++..+   +    .+.+..+++|+++.||..++..|+       .+.|..++.|+  ++.||.++++.
T Consensus       148 ~D~d~~--VR~~aA~~~---~----~~~L~~l~~D~d~~VR~~aa~~L~-------~~~L~~l~~D~--d~~VR~aaae~  209 (233)
T d1lrva_         148 RDEDRQ--VRKLVAKRL---P----EESLGLMTQDPEPEVRRIVASRLR-------GDDLLELLHDP--DWTVRLAAVEH  209 (233)
T ss_dssp             TCSCHH--HHHHHHHHS---C----GGGGGGSTTCSSHHHHHHHHHHCC-------GGGGGGGGGCS--SHHHHHHHHHH
T ss_pred             cCCCHH--HHHHHHHhc---C----HHHHHHHccCCCHHHHHHHHHhcC-------cHHHHHHHhCC--CHHHHHHHHHh
Confidence            666665  488777543   2    245677889999999999998764       25677788887  99999999976


Q ss_pred             HhccCChhhHHHHHHhhcCCCHHHHHHHHHH
Q 021051          263 LGSIADDQSIGLLKEFAKDPEPIVSQSCEVA  293 (318)
Q Consensus       263 L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~a  293 (318)
                      ++        +.+...+.|+++.||..+...
T Consensus       210 ~~--------~~ll~~L~D~d~~VR~aA~~~  232 (233)
T d1lrva_         210 AS--------LEALRELDEPDPEVRLAIAGR  232 (233)
T ss_dssp             SC--------HHHHHHCCCCCHHHHHHHHCC
T ss_pred             cc--------HHHHHHhCCCCHHHHHHHHHh
Confidence            53        345567789999999988643

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1e-11  Score=110.24  Aligned_cols=257  Identities=13%  Similarity=0.208  Sum_probs=183.9

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC-----
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA-----   79 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----   79 (318)
                      ..++.|+++|.+.+ +..+|..|+++|..+..           ...++.|.+.|.++++.++..++++|+.+...     
T Consensus        56 g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~  134 (434)
T d1q1sc_          56 GLIPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  134 (434)
T ss_dssp             TCHHHHHHHTTCGG-GHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHH
Confidence            35777888886554 24778888888877632           35677888888888888888888887653210     


Q ss_pred             -----------------------------------------------------CcHHHHHHhhhcCCCCHHHHHHHHHHH
Q 021051           80 -----------------------------------------------------EAIPALEAVLNDFSLHPIVRHEAAEAL  106 (318)
Q Consensus        80 -----------------------------------------------------~~~~~L~~~l~~~~~~~~vR~~a~~~L  106 (318)
                                                                           ..++.|..++.  +.++.++..++.+|
T Consensus       135 ~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~~~~~a~~~l  212 (434)
T d1q1sc_         135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLADSCWAI  212 (434)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHh--ccccchhhhHHhhh
Confidence                                                                 12445566666  78899999999999


Q ss_pred             HhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccH
Q 021051          107 GAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSV  175 (318)
Q Consensus       107 ~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  175 (318)
                      +.+..           ...++.|.+ +.+++++.++..+..+++.+. . +........+               ....+
T Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~Lv~-ll~~~~~~~~~~al~~l~~l~-~-~~~~~~~~~~---------------~~~~~  274 (434)
T d1q1sc_         213 SYLTDGPNERIEMVVKKGVVPQLVK-LLGATELPIVTPALRAIGNIV-T-GTDEQTQKVI---------------DAGAL  274 (434)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHH-HHTCSCHHHHHHHHHHHHHHT-T-SCHHHHHHHH---------------HTTGG
T ss_pred             cccchhhhhhHHHHhhcccchhccc-ccccchhhhhhchhhhhhhHH-h-hhhHHHHHHH---------------hcccc
Confidence            87652           457888888 668889999999999999876 1 0000000000               12246


Q ss_pred             HHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC---C------
Q 021051          176 DMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ---N------  235 (318)
Q Consensus       176 ~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~---~------  235 (318)
                      +.+..++.+++..+  |..++.++.++..           ...++.+...+.+.++.++..++.+++.+.   +      
T Consensus       275 ~~l~~ll~~~~~~v--~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~  352 (434)
T d1q1sc_         275 AVFPSLLTNPKTNI--QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY  352 (434)
T ss_dssp             GGHHHHTTCSSHHH--HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             chHHHhhcccchhh--hHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            67888888777764  9999999988753           246678888888999999999999998752   2      


Q ss_pred             ---cchHHHHHHHHhccCCCHHHHHHHHHHHhcc-------CCh----------hhHHHHHHhhcCCCHHHHHHHHHHHH
Q 021051          236 ---KAASAALSDVLRNVNEHPMVRHEAAEALGSI-------ADD----------QSIGLLKEFAKDPEPIVSQSCEVALS  295 (318)
Q Consensus       236 ---~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~-------~~~----------~~~~~L~~~l~~~~~~vr~~a~~aL~  295 (318)
                         .+.++.|+.++...  ++.++..++.+|..+       +..          +.++.|..+..+++++|+..|...|.
T Consensus       353 l~~~~~i~~L~~ll~~~--d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~  430 (434)
T d1q1sc_         353 LVHCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE  430 (434)
T ss_dssp             HHHTTCHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence               34578899999876  899999999988765       211          23455666777889999999988886


Q ss_pred             hc
Q 021051          296 ML  297 (318)
Q Consensus       296 ~l  297 (318)
                      ++
T Consensus       431 ~~  432 (434)
T d1q1sc_         431 KY  432 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8e-11  Score=107.43  Aligned_cols=266  Identities=14%  Similarity=0.131  Sum_probs=199.7

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccC------
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQ------   77 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------   77 (318)
                      ....++.|...|.+.+. ...+..|+.+|..+..          ...++.|+++|+++++.++..|+++|+.+.      
T Consensus        57 ~~~~v~~l~~~L~~~~~-~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          57 SPQMVSAIVRTMQNTND-VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred             hhhHHHHHHHHHcCCCC-HHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchh
Confidence            45678899999986552 4789999999988765          356899999999999999999999998653      


Q ss_pred             -----CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051           78 -----DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERI  141 (318)
Q Consensus        78 -----~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~  141 (318)
                           ....++.|+.++.  ++++.++..++.+|..+..           ...++.|...+...+++.++..+..++..+
T Consensus       136 ~~~~~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~l  213 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLN--KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL  213 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGG--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             hhHHHhcCCchHHHHHHH--ccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence                 2257899999999  8999999999999987642           235777888666677788999999999877


Q ss_pred             HhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC--------ChhHHHHHHH
Q 021051          142 EKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG--------GDEAVSAIID  213 (318)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--------~~~~~~~l~~  213 (318)
                      ..   ..... .              .+.....++.|..++.+++...  +..++.++.++.        ....++.|.+
T Consensus       214 s~---~~~~~-~--------------~~~~~g~~~~L~~ll~~~~~~~--~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~  273 (529)
T d1jdha_         214 SV---CSSNK-P--------------AIVEAGGMQALGLHLTDPSQRL--VQNCLWTLRNLSDAATKQEGMEGLLGTLVQ  273 (529)
T ss_dssp             TT---STTHH-H--------------HHHHTTHHHHHHTTTTSSCHHH--HHHHHHHHHHHHTTCTTCSCCHHHHHHHHH
T ss_pred             hc---ccccc-c--------------hhhhhhhhhhHHHHhcccchhh--hhhhhhHHHhccccccchhhhhhcchhhhh
Confidence            61   00000 0              0001236788888888777654  888888887653        2477899999


Q ss_pred             HhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC--------------
Q 021051          214 SLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD--------------  268 (318)
Q Consensus       214 ~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--------------  268 (318)
                      ++.++++.++..++.+|+.+..           ...++.|+..+....+++.++..++.+|..+..              
T Consensus       274 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~  353 (529)
T d1jdha_         274 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL  353 (529)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHh
Confidence            9999999999999999998753           345677787776444478899999999987741              


Q ss_pred             hhhHHHHHHhhcC-CCHHHHHHHHHHHHhchhhhc
Q 021051          269 DQSIGLLKEFAKD-PEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       269 ~~~~~~L~~~l~~-~~~~vr~~a~~aL~~l~~~~~  302 (318)
                      ...++.|..++.. .+..+...+..++..+.....
T Consensus       354 ~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~  388 (529)
T d1jdha_         354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA  388 (529)
T ss_dssp             TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred             cccchhHHHHHhccchHHHHHHHHHHHhhcchhhh
Confidence            1246778888775 446678888889988866543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.22  E-value=9.2e-13  Score=106.88  Aligned_cols=165  Identities=18%  Similarity=0.136  Sum_probs=123.7

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHH
Q 021051           18 EKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPI   97 (318)
Q Consensus        18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~   97 (318)
                      ++.|..+++|+++  .||..|++.|+       .+.|..+++|+++.||..++..+.       .+.|..++.  |+++.
T Consensus        68 ~~~L~~Ll~D~d~--~VR~~AA~~Lp-------~~~L~~L~~D~d~~VR~~aa~~l~-------~~~L~~Ll~--D~d~~  129 (233)
T d1lrva_          68 VEALTPLIRDSDE--VVRRAVAYRLP-------REQLSALMFDEDREVRITVADRLP-------LEQLEQMAA--DRDYL  129 (233)
T ss_dssp             GGGGGGGTTCSSH--HHHHHHHTTSC-------SGGGGGTTTCSCHHHHHHHHHHSC-------TGGGGGGTT--CSSHH
T ss_pred             HHHHHHHhcCCCH--HHHHHHHHHcC-------HHHHHHHhcCCChhHHHHHHhccC-------HHHHHHHhc--CCCHH
Confidence            4557788999987  99999987653       256777889999999999988652       367778888  99999


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHH
Q 021051           98 VRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDM  177 (318)
Q Consensus        98 vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  177 (318)
                      ||..+++.+       ..+.|.. +.+|+++.||..++..+   +                                .+.
T Consensus       130 VR~~aa~~~-------~~~~L~~-L~~D~d~~VR~~aA~~~---~--------------------------------~~~  166 (233)
T d1lrva_         130 VRAYVVQRI-------PPGRLFR-FMRDEDRQVRKLVAKRL---P--------------------------------EES  166 (233)
T ss_dssp             HHHHHHHHS-------CGGGGGG-TTTCSCHHHHHHHHHHS---C--------------------------------GGG
T ss_pred             HHHHHHhcc-------chhHHHH-HhcCCCHHHHHHHHHhc---C--------------------------------HHH
Confidence            999998753       2344556 77899999999877532   2                                233


Q ss_pred             HHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHH
Q 021051          178 LREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRH  257 (318)
Q Consensus       178 L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~  257 (318)
                      |..++.|+++.  ||..++..++   .    +.|..+++|+++.||..++..++        +.++..+.|+  ++.||.
T Consensus       167 L~~l~~D~d~~--VR~~aa~~L~---~----~~L~~l~~D~d~~VR~aaae~~~--------~~ll~~L~D~--d~~VR~  227 (233)
T d1lrva_         167 LGLMTQDPEPE--VRRIVASRLR---G----DDLLELLHDPDWTVRLAAVEHAS--------LEALRELDEP--DPEVRL  227 (233)
T ss_dssp             GGGSTTCSSHH--HHHHHHHHCC---G----GGGGGGGGCSSHHHHHHHHHHSC--------HHHHHHCCCC--CHHHHH
T ss_pred             HHHHccCCCHH--HHHHHHHhcC---c----HHHHHHHhCCCHHHHHHHHHhcc--------HHHHHHhCCC--CHHHHH
Confidence            55556666665  5988887653   2    45777889999999999886532        4567778776  999999


Q ss_pred             HHHHH
Q 021051          258 EAAEA  262 (318)
Q Consensus       258 ~a~~a  262 (318)
                      .|+..
T Consensus       228 aA~~~  232 (233)
T d1lrva_         228 AIAGR  232 (233)
T ss_dssp             HHHCC
T ss_pred             HHHHh
Confidence            98754

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.7e-08  Score=87.03  Aligned_cols=280  Identities=11%  Similarity=0.077  Sum_probs=182.6

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-------
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD-------   78 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------   78 (318)
                      +++.|+++|.++++  .++..|+.+|+.+..           ...++.|+++|+++++.+|..|+++|+.+..       
T Consensus         3 ~ip~lv~~L~~~~~--~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDE--KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCT--HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            57899999999998  999999999999742           2468999999999999999999999987642       


Q ss_pred             ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCc---------HHHHHhhh---------------ccCCCHHH
Q 021051           79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESN---------IPLLKNSL---------------VSDPAQEV  130 (318)
Q Consensus        79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~---------~~~L~~~l---------------~~d~~~~v  130 (318)
                          ...++.|..++. .+.++.+|..++.+|..+.....         .+.+...+               ....++.+
T Consensus        81 ~i~~~g~v~~li~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLR-RTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHT-TCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHh-ccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence                245788888887 36789999999999988753221         11111111               13346777


Q ss_pred             HHHHHHHHHHHHhhhc------cCcc----cccccc-------------------------------------------C
Q 021051          131 RETCELALERIEKLKA------SGSD----GSSMTE-------------------------------------------R  157 (318)
Q Consensus       131 r~~a~~aL~~~~~~~~------~~~~----~~~~l~-------------------------------------------~  157 (318)
                      +..+..++..+.....      ....    +...+.                                           .
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            7777776655430000      0000    000000                                           0


Q ss_pred             CC--------Cccc-----CC----CC-----------CCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC------
Q 021051          158 SP--------FMSV-----DP----AA-----------PASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG------  203 (318)
Q Consensus       158 ~~--------~~~~-----~~----~~-----------~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~------  203 (318)
                      ..        +...     ..    ..           .+.....++.+...+.....+ .++..+..++..+.      
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~-~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD-ATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccch-HHHHHHHHHHHHHhhccccc
Confidence            00        0000     00    00           000234556677776554433 24666666666542      


Q ss_pred             ----------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC---------cchHHHHHHHHhcc----CCCHHHHHHHH
Q 021051          204 ----------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN---------KAASAALSDVLRNV----NEHPMVRHEAA  260 (318)
Q Consensus       204 ----------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~---------~~~~~~L~~~l~~~----~~~~~vr~~a~  260 (318)
                                ....++.+.+.++++++.++..++.+++.+..         ..+++.|+.++...    ..+++++..++
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~  398 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC  398 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHH
Confidence                      12467888999999999999999999988753         23566777777532    12467999999


Q ss_pred             HHHhccC-----------ChhhHHHHHHhhcC-CCHHHHHHHHHHHHhchhh
Q 021051          261 EALGSIA-----------DDQSIGLLKEFAKD-PEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       261 ~aL~~~~-----------~~~~~~~L~~~l~~-~~~~vr~~a~~aL~~l~~~  300 (318)
                      .+|.++.           +.++++.|.+++.+ .++.++..|..+|..+-.+
T Consensus       399 ~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            9988763           23578999998876 5788999999999998433

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1e-08  Score=99.03  Aligned_cols=280  Identities=14%  Similarity=0.104  Sum_probs=172.5

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD-------   78 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------   78 (318)
                      ..++.+.+.+.+++  |..|..|+.+++.+..          +..++.|+..++|+++.||..++|+||++..       
T Consensus       395 ~~l~~l~~~l~s~~--~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~  472 (888)
T d1qbkb_         395 HILPLLKELLFHHE--WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP  472 (888)
T ss_dssp             HHHHHHHHTTTSSS--HHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCH
T ss_pred             HHHHHHHHhhccch--hHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence            45566667777665  7999999999987654          3466778888899999999999999997641       


Q ss_pred             ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC---CC-------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 021051           79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG---LE-------SNIPLLKNSLVSDPAQEVRETCELALERIEKL  144 (318)
Q Consensus        79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~---~~-------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~  144 (318)
                          ...++.+...+.  ++++.||..|+.+|..+.   ..       ..++.|.. ...+.+...+..+..+++.+.+-
T Consensus       473 ~~~~~~~l~~ll~~l~--d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~-~l~~~~~~~~~~~~~al~~l~~~  549 (888)
T d1qbkb_         473 DTYLKPLMTELLKRIL--DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF-AFSKYQHKNLLILYDAIGTLADS  549 (888)
T ss_dssp             HHHTTTHHHHHHHHHS--SSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHh
Confidence                356777888888  899999999999998653   11       23445555 34666777777777777766410


Q ss_pred             hccC---ccccccc-----------cCCCCcccCCC--------CCCCCCccH-------HHHHHHHc------------
Q 021051          145 KASG---SDGSSMT-----------ERSPFMSVDPA--------APASSCSSV-------DMLREVLL------------  183 (318)
Q Consensus       145 ~~~~---~~~~~~l-----------~~~~~~~~~~~--------~~~~~~~~~-------~~L~~~l~------------  183 (318)
                      ....   ....+.+           ...+.. ..+.        ... .....       +.+...+.            
T Consensus       550 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~le~l~~i~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  627 (888)
T d1qbkb_         550 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKD-LFPLLECLSSVATAL-QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQ  627 (888)
T ss_dssp             HGGGGCSHHHHHHHHHHHHHHHTTSCTTCTT-HHHHHHHHHHHHHHS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcccchHH-HHHHHHHHHHHHHHh-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            0000   0000000           000000 0000        000 01111       11111110            


Q ss_pred             ---CCCcChHHHHHHHHHHHhC----CC--------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC----------cch
Q 021051          184 ---GEEKGMYERYAALFALRNH----GG--------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN----------KAA  238 (318)
Q Consensus       184 ---~~~~~~~~r~~a~~~L~~~----~~--------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~----------~~~  238 (318)
                         ...........++..++.+    +.        ....+.+..++++.++.+|..|+.++|.+..          +..
T Consensus       628 ~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~  707 (888)
T d1qbkb_         628 PDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADF  707 (888)
T ss_dssp             TTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence               0111111233333333322    21        1245667778899999999999998886531          234


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHhccC----------ChhhHHHHHHhhcCC--CHHHHHHHHHHHHhchhhhcch
Q 021051          239 SAALSDVLRNVNEHPMVRHEAAEALGSIA----------DDQSIGLLKEFAKDP--EPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       239 ~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~~~--~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      ++.|...+.+.  .+.++..|++++|.+.          -+..++.|.+.++++  ...|+..++.+|+++.....+.
T Consensus       708 ~~~l~~~L~~~--~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~  783 (888)
T d1qbkb_         708 MPILGTNLNPE--FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQE  783 (888)
T ss_dssp             HHHHHHTCCGG--GHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHhCcC--CHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHH
Confidence            55666666665  7899999999999873          135788888888764  4668999999999998776544

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=98.96  E-value=6.1e-08  Score=82.67  Aligned_cols=248  Identities=14%  Similarity=0.090  Sum_probs=171.2

Q ss_pred             HHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC--CCcH
Q 021051           38 ALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL--ESNI  115 (318)
Q Consensus        38 A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~--~~~~  115 (318)
                      .++.++.... +.+..+.+-+. ..+..|...+.+++..|...++..+.+.+.+..-........+.+++....  .+.+
T Consensus        48 Lv~~lR~~~~-e~l~~v~~~~~-~~~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~Pt~~~l  125 (336)
T d1lsha1          48 LTAFLRNVDA-GVLQSIWHKLH-QQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVASTLSNQQATRESL  125 (336)
T ss_dssp             HHHHHTTSCH-HHHHHHHHHHT-TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             HHHHHHCCCH-HHHHHHHHHHh-cChhHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCHHHH
Confidence            3444444443 34444444333 356678889999999999999999999998544445544555566665543  3455


Q ss_pred             HHHHhhhccC----CCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHH
Q 021051          116 PLLKNSLVSD----PAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYE  191 (318)
Q Consensus       116 ~~L~~~l~~d----~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~  191 (318)
                      ..+.. +..+    .++.++..+..+++.+.. .....        ...... .   + -+.....+.+.....+..  .
T Consensus       126 ~~~~~-l~~~~~~~~~~~l~~~a~La~gslv~-~~c~~--------~~~~~~-~---~-~~~l~~~l~~~~~~~~~~--~  188 (336)
T d1lsha1         126 SYARE-LLNTSFIRNRPILRKTAVLGYGSLVF-RYCAN--------TVSCPD-E---L-LQPLHDLLSQSSDRAKEE--E  188 (336)
T ss_dssp             HHHHH-HHTCHHHHTCHHHHHHHHHHHHHHHH-HHHTT--------CSSCCG-G---G-THHHHHHHHHHHHTTCHH--H
T ss_pred             HHHHH-HHcCcccccchhHHHHHHHHHHHHHH-HHhcC--------CCCCcH-H---H-HHHHHHHHHHhhcccchH--H
Confidence            66666 3333    478999999999998761 11100        000000 0   0 011233333444444433  4


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHhCC-------CCHHHHHHHHHHHhccCC---cchHHHHHHHHhccCCCHHHHHHHHH
Q 021051          192 RYAALFALRNHGGDEAVSAIIDSLGA-------TSALLKHEVAYVLGQLQN---KAASAALSDVLRNVNEHPMVRHEAAE  261 (318)
Q Consensus       192 r~~a~~~L~~~~~~~~~~~l~~~l~d-------~~~~vr~~a~~~L~~~~~---~~~~~~L~~~l~~~~~~~~vr~~a~~  261 (318)
                      +..++++||+.|.+..++.|...+.+       .+..+|..|+.+|.++..   ..+.+.+...+.+..+++++|.+|+.
T Consensus       189 ~~~~LkaLGN~g~p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~  268 (336)
T d1lsha1         189 IVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCI  268 (336)
T ss_dssp             HHHHHHHHHHHTCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred             HHHHHHHHhccCCHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence            77899999999999999999988853       267899999999998853   35678899999988889999999999


Q ss_pred             HHhcc-CChhhHHHHHHhh-cCCCHHHHHHHHHHHHhchhhhcch
Q 021051          262 ALGSI-ADDQSIGLLKEFA-KDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       262 aL~~~-~~~~~~~~L~~~l-~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                      .|.+. .....+..+...+ .+++.+|+..+...|..+...+...
T Consensus       269 ~lm~t~P~~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~  313 (336)
T d1lsha1         269 VFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE  313 (336)
T ss_dssp             HHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHhcCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcc
Confidence            99887 4555677788765 4689999999999999988766655

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.8e-08  Score=88.80  Aligned_cols=234  Identities=15%  Similarity=0.066  Sum_probs=153.6

Q ss_pred             CCChHHHHHHhccC--CCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC-
Q 021051           47 GPGPRDALIRATKD--SSNLLAHEAAFALGQMQD-----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE-  112 (318)
Q Consensus        47 ~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~-  112 (318)
                      .++.++.+.+.+.+  .++.++..++.+++.+..           ...++.+...+.+.+.+..+|..++.+++.+... 
T Consensus       125 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~  204 (458)
T d1ibrb_         125 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  204 (458)
T ss_dssp             CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred             CcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhh
Confidence            46889999998854  467788888888876431           1235666777764456789999999999876531 


Q ss_pred             -----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHH
Q 021051          113 -----------SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREV  181 (318)
Q Consensus       113 -----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~  181 (318)
                                 ...+.+.. +..++++.++..+..++..+..  .....+...               ........+...
T Consensus       205 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~i~~--~~~~~~~~~---------------l~~~~~~~~~~~  266 (458)
T d1ibrb_         205 KANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMS--LYYQYMETY---------------MGPALFAITIEA  266 (458)
T ss_dssp             HHHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHH--HCGGGCTTT---------------TTTTHHHHHHHH
T ss_pred             hhhhhhHHHHHHhHhhHHH-HhcCCCHHHHHHHHHHHHHHHH--HhHHHHHHH---------------HHHHHHHHHHHH
Confidence                       12344555 5688999999999999998861  111100000               011233445555


Q ss_pred             HcCCCcChHHHHHHHHHHHhCCC-------------------------------hhHHHHHHHHhC-------CCCHHHH
Q 021051          182 LLGEEKGMYERYAALFALRNHGG-------------------------------DEAVSAIIDSLG-------ATSALLK  223 (318)
Q Consensus       182 l~~~~~~~~~r~~a~~~L~~~~~-------------------------------~~~~~~l~~~l~-------d~~~~vr  223 (318)
                      ..+.+..  ++..++..+..+..                               ....+.+.+.+.       +.++.+|
T Consensus       267 ~~~~~~~--~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  344 (458)
T d1ibrb_         267 MKSDIDE--VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPC  344 (458)
T ss_dssp             HHCSSHH--HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHH
T ss_pred             hccccHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHH
Confidence            5566554  37777776655421                               122233334332       2345677


Q ss_pred             HHHHHHHhccC---CcchH----HHHHHHHhccCCCHHHHHHHHHHHhccCC-----------hhhHHHHHHhhcCCCHH
Q 021051          224 HEVAYVLGQLQ---NKAAS----AALSDVLRNVNEHPMVRHEAAEALGSIAD-----------DQSIGLLKEFAKDPEPI  285 (318)
Q Consensus       224 ~~a~~~L~~~~---~~~~~----~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~  285 (318)
                      ..+..+++.+.   .+..+    +.+.+.+.++  +|.+|.+|+.+|+.+..           +..++.|...++|+++.
T Consensus       345 ~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~--~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~  422 (458)
T d1ibrb_         345 KAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV  422 (458)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHH
Confidence            77777777643   33344    4555555665  89999999999988752           34688999999999999


Q ss_pred             HHHHHHHHHHhchhhhc
Q 021051          286 VSQSCEVALSMLEYEQL  302 (318)
Q Consensus       286 vr~~a~~aL~~l~~~~~  302 (318)
                      ||..|+++|+++...-.
T Consensus       423 VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         423 VRDTAAWTVGRICELLP  439 (458)
T ss_dssp             HHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999865543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.2e-07  Score=83.27  Aligned_cols=247  Identities=15%  Similarity=0.086  Sum_probs=154.3

Q ss_pred             ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhcc--CCCHHHHHHHHHHHhccCCC-
Q 021051           14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATK--DSSNLLAHEAAFALGQMQDA-   79 (318)
Q Consensus        14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~~-   79 (318)
                      -++.++.+...+.++..++..+..++..++.+..           ....+.+...+.  +.+..+|..++.+++.+... 
T Consensus       125 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~  204 (458)
T d1ibrb_         125 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  204 (458)
T ss_dssp             CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred             CcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhh
Confidence            4578888888888877767788888888766422           124555666664  45688999999999876531 


Q ss_pred             -----------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCc-HHHHHhhhccCCCHHHHHHHHHH
Q 021051           80 -----------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------ESN-IPLLKNSLVSDPAQEVRETCELA  137 (318)
Q Consensus        80 -----------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~-~~~L~~~l~~d~~~~vr~~a~~a  137 (318)
                                 ...+.+...+.  ++++.+|..++.+|..+..          ... .+.+.. ...+.++.++..++..
T Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~a~~~  281 (458)
T d1ibrb_         205 KANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE-AMKSDIDEVALQGIEF  281 (458)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH-HHHCSSHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHhHhhHHHHhc--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHH
Confidence                       12345556666  8899999999999887531          122 233344 5578899999999988


Q ss_pred             HHHHHhhhccC-ccccccccCCCCcccCCCCCCC----CCccHHHHHHHHcC-----CCcChHHHHHHHHHHHhC----C
Q 021051          138 LERIEKLKASG-SDGSSMTERSPFMSVDPAAPAS----SCSSVDMLREVLLG-----EEKGMYERYAALFALRNH----G  203 (318)
Q Consensus       138 L~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~L~~~l~~-----~~~~~~~r~~a~~~L~~~----~  203 (318)
                      +..+....... ....+....  ...........    .+...+.+...+.+     .+....+|..+..++..+    +
T Consensus       282 l~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~  359 (458)
T d1ibrb_         282 WSNVCDEEMDLAIEASEAAEQ--GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE  359 (458)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCS--SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhhhHHHh--hhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhcc
Confidence            87765110000 000000000  00000000000    01123334444321     111222478787777654    2


Q ss_pred             C---hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051          204 G---DEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA  267 (318)
Q Consensus       204 ~---~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~  267 (318)
                      .   +..++.+.+.+++++|.+|..++.+||.+..           +..++.|...+.|+  ++.||.+|+++||++.
T Consensus       360 ~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~--~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         360 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP--SVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHH
Confidence            2   2444566677889999999999999987642           35688999999987  9999999999999874

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=5.4e-07  Score=78.40  Aligned_cols=91  Identities=15%  Similarity=0.065  Sum_probs=78.7

Q ss_pred             hHHHHHHhccCCCHHHHHHHHHHHhccCC--C---------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------
Q 021051           50 PRDALIRATKDSSNLLAHEAAFALGQMQD--A---------EAIPALEAVLNDFSLHPIVRHEAAEALGAIG--------  110 (318)
Q Consensus        50 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--------  110 (318)
                      .+|.|+++|+++++.++..|+++|+.+..  +         ..+|.|++++.  ++++.+|..|+.+|+++.        
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            58999999999999999999999999652  2         45899999999  899999999999998874        


Q ss_pred             ---CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051          111 ---LESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus       111 ---~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                         +.+.++.|...+.++.++.+|..+..++..+.
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~  115 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS  115 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence               13457888886777889999999999999987

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.1e-07  Score=89.61  Aligned_cols=108  Identities=19%  Similarity=0.168  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHhccCC---CChHH----HHHHhccCCCHHHHHHHHHHHhccCC----------CCcHHHHHHhhhcCCC
Q 021051           32 ISERFRALFSLRNLKG---PGPRD----ALIRATKDSSNLLAHEAAFALGQMQD----------AEAIPALEAVLNDFSL   94 (318)
Q Consensus        32 ~~~r~~A~~~l~~~~~---~~~~~----~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~   94 (318)
                      |..|..+..++..+..   .+..+    .+.+.+.++++..|..|+.++|.+..          +..++.|...+.  |+
T Consensus       371 ~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~--d~  448 (888)
T d1qbkb_         371 WNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS--DK  448 (888)
T ss_dssp             CSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTT--SS
T ss_pred             hhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhcc--CC
Confidence            4578888887766543   34444    44455678999999999999998764          234667778888  89


Q ss_pred             CHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           95 HPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        95 ~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      ++.||..++.+|+++..           ...++.+.. ...|+++.|+..++.++..+.
T Consensus       449 ~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~l~d~~~~V~~~a~~al~~l~  506 (888)
T d1qbkb_         449 KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK-RILDSNKRVQEAACSAFATLE  506 (888)
T ss_dssp             CHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHH-HHSSSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH-HhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999997641           335666666 447889999999999999886

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2e-07  Score=92.45  Aligned_cols=122  Identities=12%  Similarity=0.084  Sum_probs=75.8

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhcc-CC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC------
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNL-KG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA------   79 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~-~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------   79 (318)
                      .+..|.+-+.|+|+  ..|++|+.-|... ..          .+.++.|.++|.|+++.||..|+.+|+.+...      
T Consensus         4 ~~~~ll~k~~~~D~--d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDK--DFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV   81 (1207)
T ss_dssp             HHHHHHHHTTCSSH--HHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hHHHHHHhcCCCCH--hHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH
Confidence            45567777888887  8999998766543 21          13577888888899999999999888876432      


Q ss_pred             -CcHHHHHHhhhcCCCCHHHHHHHHHHHHhc----CCC------------CcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           80 -EAIPALEAVLNDFSLHPIVRHEAAEALGAI----GLE------------SNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        80 -~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~----~~~------------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                       ..++.|...+.  +++..+|..+..+|..+    +..            ..++.+.....+.+++.++..+...++.+-
T Consensus        82 ~~l~~~L~~~l~--~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~  159 (1207)
T d1u6gc_          82 ETIVDTLCTNML--SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  159 (1207)
T ss_dssp             HHHHHHHHHHTT--CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc--CCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence             23444455555  56777777766665432    110            112333333344556666666666665543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.7e-07  Score=75.12  Aligned_cols=134  Identities=17%  Similarity=0.168  Sum_probs=86.9

Q ss_pred             cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHH
Q 021051          114 NIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERY  193 (318)
Q Consensus       114 ~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~  193 (318)
                      .++.+...+.+++++.+|..++.+|+.+..  +.... ...              +.....++.|+.++.+...+ .+|.
T Consensus        59 g~~~ll~~ll~s~~~~vr~~A~~~L~~l~~--~~~~~-~~~--------------~~~~~~i~~Lv~lL~~~~~~-~v~~  120 (264)
T d1xqra1          59 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQ--NVAAI-QEQ--------------VLGLGALRKLLRLLDRDACD-TVRV  120 (264)
T ss_dssp             HHHHHHHTTTTCSSHHHHHHHHHHHHHHHT--TCHHH-HHH--------------HHHTTHHHHHHHHHHHCSCH-HHHH
T ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHHH-HHH--------------HHHcCchHHHHHHhhcCCCH-HHHH
Confidence            455555446678889999999999998871  00000 000              00123678888888543332 3588


Q ss_pred             HHHHHHHhCCC-----------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC--C---------cchHHHHHHHHhccCC
Q 021051          194 AALFALRNHGG-----------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ--N---------KAASAALSDVLRNVNE  251 (318)
Q Consensus       194 ~a~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~---------~~~~~~L~~~l~~~~~  251 (318)
                      .++.+|.++..           ...++.|.+++.+.+..++..++.+|+.+.  +         ..+++.|+.++.++  
T Consensus       121 ~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~--  198 (264)
T d1xqra1         121 KALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE--  198 (264)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC--
T ss_pred             HHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCC--
Confidence            88888877632           245677777777778888888888877653  1         23577777877765  


Q ss_pred             CHHHHHHHHHHHhccC
Q 021051          252 HPMVRHEAAEALGSIA  267 (318)
Q Consensus       252 ~~~vr~~a~~aL~~~~  267 (318)
                      ++.+|..++.+|+.+.
T Consensus       199 ~~~~~~~a~~aL~~L~  214 (264)
T d1xqra1         199 HSPFHEHVLGALCSLV  214 (264)
T ss_dssp             CSTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            6778888888887774

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.6e-07  Score=90.51  Aligned_cols=178  Identities=18%  Similarity=0.195  Sum_probs=118.0

Q ss_pred             CCHHHHHHHHHHHHhcC-------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCC
Q 021051           94 LHPIVRHEAAEALGAIG-------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPA  166 (318)
Q Consensus        94 ~~~~vR~~a~~~L~~~~-------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~  166 (318)
                      ..+.+|..++.+|+.++       .++..+.+.+ ..+++++.||.+|+.++++++ ..+.                   
T Consensus       827 ~~~~~~~~al~~Lge~~~~~~~~~~~~l~~~l~~-~l~~~~~~vr~aAa~aLg~l~-~~~~-------------------  885 (1207)
T d1u6gc_         827 STDSIRLLALLSLGEVGHHIDLSGQLELKSVILE-AFSSPSEEVKSAASYALGSIS-VGNL-------------------  885 (1207)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHH-GGGCSCHHHHHHHHHHHHHHH-HHTH-------------------
T ss_pred             chHHHHHHHHHHHHHHHHhccccchHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHH-HhhH-------------------
Confidence            34566666666666543       1223445556 457888888888888888776 1110                   


Q ss_pred             CCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----CCh---hHHH----HHHHHhCCCCHHHHHHHHHHHhcc--
Q 021051          167 APASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----GGD---EAVS----AIIDSLGATSALLKHEVAYVLGQL--  233 (318)
Q Consensus       167 ~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~~~---~~~~----~l~~~l~d~~~~vr~~a~~~L~~~--  233 (318)
                           ...+|.+.+.+......   +...+.++..+    +..   ...+    .+...+.+.++.+|..++.+||++  
T Consensus       886 -----~~~lp~il~~l~~~~~~---~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~  957 (1207)
T d1u6gc_         886 -----PEYLPFVLQEITSQPKR---QYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTL  957 (1207)
T ss_dssp             -----HHHHHHHHHHHHSCGGG---HHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHH
T ss_pred             -----HHHhHHHHHHHhcCchH---HHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh
Confidence                 23567777777554433   55555444332    221   2223    333334667888999999999886  


Q ss_pred             -CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC---h-------hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051          234 -QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD---D-------QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL  302 (318)
Q Consensus       234 -~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---~-------~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~  302 (318)
                       ..+..+|.|...+.++  ++.+|..++.++..+-.   .       ..++.+...++|++..||..|..+|..+-+...
T Consensus       958 ~~~~~~lp~L~~~l~~~--~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p 1035 (1207)
T d1u6gc_         958 IDPETLLPRLKGYLISG--SSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP 1035 (1207)
T ss_dssp             SSGGGTHHHHTTTSSSS--CHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCG
T ss_pred             cCHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh
Confidence             4467889999999887  89999999999987532   1       223445567889999999999999998876644

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2e-07  Score=76.81  Aligned_cols=108  Identities=19%  Similarity=0.167  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHhccCCC----------ChHHHHHH-hccCCCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhh
Q 021051           33 SERFRALFSLRNLKGP----------GPRDALIR-ATKDSSNLLAHEAAFALGQMQD-----------AEAIPALEAVLN   90 (318)
Q Consensus        33 ~~r~~A~~~l~~~~~~----------~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~   90 (318)
                      ..|..|+..|..+...          ..++.++. +++++++.+|..|+++|+.+..           ...++.|+.++.
T Consensus        32 ~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~  111 (264)
T d1xqra1          32 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  111 (264)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhh
Confidence            6677777777766442          34566664 6789999999999999998763           256899999997


Q ss_pred             cCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           91 DFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        91 ~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      + +.++.+|..++.+|+.+..           ...++.|.. +..++++.++..++.++.++.
T Consensus       112 ~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~-lL~~~~~~~~~~a~~~L~~l~  172 (264)
T d1xqra1         112 R-DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR-AMQQQVQKLKVKSAFLLQNLL  172 (264)
T ss_dssp             H-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHH
T ss_pred             c-CCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHH-HHhcCchHHHHHHHHHHHHHH
Confidence            3 6789999999999987642           345788888 557889999999999999876

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=1.7e-05  Score=74.72  Aligned_cols=123  Identities=18%  Similarity=0.184  Sum_probs=86.8

Q ss_pred             hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC---CChHHHHHHhccC--CCHHHHHHHHHHHhccCCC-----------
Q 021051           16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG---PGPRDALIRATKD--SSNLLAHEAAFALGQMQDA-----------   79 (318)
Q Consensus        16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~---~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~-----------   79 (318)
                      +....|...+.++++  .+|..|-+.|..+..   +.....|.+.+.+  .+..+|..|+..|.+.-..           
T Consensus         5 ~~~~~L~~~~~s~d~--~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~   82 (861)
T d2bpta1           5 EFAQLLENSILSPDQ--NIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ   82 (861)
T ss_dssp             HHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHh
Confidence            344455566778886  899999999987754   3556667777754  3678999998887653211           


Q ss_pred             ------------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------CCCcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051           80 ------------EAIPALEAVLNDFSLHPIVRHEAAEALGAIG--------LESNIPLLKNSLVSDPAQEVRETCELALE  139 (318)
Q Consensus        80 ------------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~  139 (318)
                                  .....+.+.+.  ++++.+|..+..+++.+.        .++.++.|.+.+.++.+..+|..+..+++
T Consensus        83 ~~~~~i~~~~~~~ik~~ll~~l~--~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~  160 (861)
T d2bpta1          83 RWITQVSPEAKNQIKTNALTALV--SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALG  160 (861)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred             hhHhcCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence                        11244566677  789999999998887652        34567777775555566789999999998


Q ss_pred             HHH
Q 021051          140 RIE  142 (318)
Q Consensus       140 ~~~  142 (318)
                      .+.
T Consensus       161 ~i~  163 (861)
T d2bpta1         161 YMC  163 (861)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=0.00016  Score=68.19  Aligned_cols=107  Identities=21%  Similarity=0.187  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhCC---C----hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCC
Q 021051          191 ERYAALFALRNHG---G----DEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEH  252 (318)
Q Consensus       191 ~r~~a~~~L~~~~---~----~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~  252 (318)
                      +|..+..++..+.   .    +..++.+.+.+.+++|..|..++..++.+..           ...++.+...+.++  +
T Consensus       344 ~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~--~  421 (876)
T d1qgra_         344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP--S  421 (876)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS--S
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCC--c
Confidence            4777777665542   2    2344556667789999999999999987643           23567777788876  8


Q ss_pred             HHHHHHHHHHHhccCC--------h----hhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          253 PMVRHEAAEALGSIAD--------D----QSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       253 ~~vr~~a~~aL~~~~~--------~----~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      +.||.+++++++.+..        .    ..++.+...+. +++.++..+++++..+...
T Consensus       422 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~  480 (876)
T d1qgra_         422 VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence            9999999999998641        1    23444444444 4788999999999877544

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=2.5e-05  Score=73.82  Aligned_cols=259  Identities=15%  Similarity=0.087  Sum_probs=156.4

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHhcc--------CCCChHHHHHHhccCC--CHHHHHHHHHHHhccCC---------
Q 021051           18 EKFLCDRLVDPTQPISERFRALFSLRNL--------KGPGPRDALIRATKDS--SNLLAHEAAFALGQMQD---------   78 (318)
Q Consensus        18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~--------~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~---------   78 (318)
                      ...+...|.+++.   .|..++..++.+        ..|+.++.|.+.+.++  +..+|..++.+|+.+..         
T Consensus        92 k~~ll~~l~~~~~---~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~  168 (876)
T d1qgra_          92 KNYVLHTLGTETY---RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD  168 (876)
T ss_dssp             HHHHHHHTTTCCS---SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG
T ss_pred             HHHHHHHhcCCcH---HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            3456677777663   344455555443        2378999999988544  57889899998876531         


Q ss_pred             --CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC--------C----CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 021051           79 --AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL--------E----SNIPLLKNSLVSDPAQEVRETCELALERIEKL  144 (318)
Q Consensus        79 --~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~--------~----~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~  144 (318)
                        ...++.+...+.+.+++..+|..++.++.....        .    ...+.+.. ...++++.++..+..++..+.. 
T Consensus       169 ~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~v~~~~~~~l~~l~~-  246 (876)
T d1qgra_         169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMS-  246 (876)
T ss_dssp             GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHH-
Confidence              123556666666445678999999998865431        1    13344555 5678999999999999998861 


Q ss_pred             hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--------------------
Q 021051          145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--------------------  204 (318)
Q Consensus       145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--------------------  204 (318)
                       .........+               .......+.....+....+  +..++..+..+..                    
T Consensus       247 -~~~~~~~~~~---------------~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  308 (876)
T d1qgra_         247 -LYYQYMETYM---------------GPALFAITIEAMKSDIDEV--ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE  308 (876)
T ss_dssp             -HSGGGCHHHH---------------TTTHHHHHHHHHTCSSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             -HhHHHHHHHH---------------HHHHHHHHHHHhccccHHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHH
Confidence             1111000000               0112344445555554443  5555543332211                    


Q ss_pred             -----------hhHHHHHHHHhC-------CCCHHHHHHHHHHHhccC---CcchH----HHHHHHHhccCCCHHHHHHH
Q 021051          205 -----------DEAVSAIIDSLG-------ATSALLKHEVAYVLGQLQ---NKAAS----AALSDVLRNVNEHPMVRHEA  259 (318)
Q Consensus       205 -----------~~~~~~l~~~l~-------d~~~~vr~~a~~~L~~~~---~~~~~----~~L~~~l~~~~~~~~vr~~a  259 (318)
                                 ....+.+...+.       +.++.++..+..++..+.   ....+    +.+.+.+.+.  +|..|.++
T Consensus       309 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~--~~~~r~~~  386 (876)
T d1qgra_         309 HTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAA  386 (876)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS--SHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc--hHHHHHHH
Confidence                       122233333332       224456766666665543   23344    4445555555  89999999


Q ss_pred             HHHHhccCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051          260 AEALGSIAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQ  301 (318)
Q Consensus       260 ~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~  301 (318)
                      +.+++.+..           +..++.+...+.|+++.||..+.++++++-...
T Consensus       387 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  439 (876)
T d1qgra_         387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (876)
T ss_dssp             HHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHc
Confidence            999988742           235677778889999999999999999886543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=0.00024  Score=66.51  Aligned_cols=226  Identities=14%  Similarity=0.036  Sum_probs=148.0

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHhccCC---CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC---------------
Q 021051           51 RDALIRATKDSSNLLAHEAAFALGQMQD---AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE---------------  112 (318)
Q Consensus        51 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~---------------  112 (318)
                      ...|...+.++|+.+|..|-..|.++..   ...+..|.+.+.+.+.+..+|..|+..|.+.=..               
T Consensus         7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~   86 (861)
T d2bpta1           7 AQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWIT   86 (861)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHh
Confidence            4445566678999999999999987653   3556778888875566789999998888654211               


Q ss_pred             ----C----cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC
Q 021051          113 ----S----NIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG  184 (318)
Q Consensus       113 ----~----~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~  184 (318)
                          +    ....+.+ ...++++.||..++.+++.+....-...            .+        ++.++.|+..+.+
T Consensus        87 ~i~~~~~~~ik~~ll~-~l~~~~~~vr~~~a~~i~~i~~~~~p~~------------~w--------peli~~L~~~~~s  145 (861)
T d2bpta1          87 QVSPEAKNQIKTNALT-ALVSIEPRIANAAAQLIAAIADIELPHG------------AW--------PELMKIMVDNTGA  145 (861)
T ss_dssp             HSCHHHHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHGGGT------------CC--------HHHHHHHHHHTST
T ss_pred             cCCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHhCCcC------------ch--------HHHHHHHHHHhcC
Confidence                1    1233445 3468899999999999998762110000            00        2456777777765


Q ss_pred             CCcChHHHHHHHHHHHhCC----C------h---hHHHHHHHHh--CCCCHHHHHHHHHHHhccCC------------cc
Q 021051          185 EEKGMYERYAALFALRNHG----G------D---EAVSAIIDSL--GATSALLKHEVAYVLGQLQN------------KA  237 (318)
Q Consensus       185 ~~~~~~~r~~a~~~L~~~~----~------~---~~~~~l~~~l--~d~~~~vr~~a~~~L~~~~~------------~~  237 (318)
                      ++.. ..|..++.+++.+.    .      .   ..+..+...+  .+.+..+|..++.+++.+-.            ..
T Consensus       146 ~~~~-~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~  224 (861)
T d2bpta1         146 EQPE-NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNY  224 (861)
T ss_dssp             TSCH-HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHH
T ss_pred             CCcH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhH
Confidence            5543 35888888887652    1      1   2223333333  45678999999999886421            22


Q ss_pred             hHHHHHHHHhccCCCHHHHHHHHHHHhccCCh----------hhHHHH-HHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          238 ASAALSDVLRNVNEHPMVRHEAAEALGSIADD----------QSIGLL-KEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~----------~~~~~L-~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      .++.|...+.+.  ++.+|..+++.+..+...          ..+..+ ....++.++.++..+...+..+...
T Consensus       225 ~~~~l~~~~~~~--~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~  296 (861)
T d2bpta1         225 LMQVVCEATQAE--DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEE  296 (861)
T ss_dssp             HHHHHHHHHTCS--CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            455666777776  899999999999887421          122222 3345678899999988877766443

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.77  E-value=6.7e-05  Score=63.36  Aligned_cols=124  Identities=14%  Similarity=0.138  Sum_probs=100.1

Q ss_pred             hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccC-------CCHHHHHHHHHHHhccCCC---CcHHHHH
Q 021051           17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKD-------SSNLLAHEAAFALGQMQDA---EAIPALE   86 (318)
Q Consensus        17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d-------~~~~vr~~a~~aL~~~~~~---~~~~~L~   86 (318)
                      ....+.+.+...+.  ..+..++++||+.|.+..++.|.+++.+       .+..+|..|+++|.++...   ...+.+.
T Consensus       173 l~~~l~~~~~~~~~--~~~~~~LkaLGN~g~p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~~~l~  250 (336)
T d1lsha1         173 LHDLLSQSSDRAKE--EEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVL  250 (336)
T ss_dssp             HHHHHHHHHHTTCH--HHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHH
T ss_pred             HHHHHHHhhcccch--HHHHHHHHHHhccCCHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHHHHHH
Confidence            34445555666664  7888999999999999999999999843       2678999999999987643   3467888


Q ss_pred             HhhhcCCCCHHHHHHHHHHHHhc-CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           87 AVLNDFSLHPIVRHEAAEALGAI-GLESNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        87 ~~l~~~~~~~~vR~~a~~~L~~~-~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      .++.+...++.+|..|+..|-.. +....+..+...+..+++..|+......|..+.
T Consensus       251 ~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la  307 (336)
T d1lsha1         251 PIFLNVAIKSELRIRSCIVFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLS  307 (336)
T ss_dssp             HHHHCTTSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            88887788899999999999876 445567778887778999999988888888776

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.06  E-value=0.33  Score=37.03  Aligned_cols=123  Identities=9%  Similarity=-0.066  Sum_probs=82.6

Q ss_pred             HHHHHcCCCcChHHHHHHHHHHHhCC---ChhHHHHHHHHhCC-CCHHHHHHHHHHHhc-c--CCcchHHHHHHHHhccC
Q 021051          178 LREVLLGEEKGMYERYAALFALRNHG---GDEAVSAIIDSLGA-TSALLKHEVAYVLGQ-L--QNKAASAALSDVLRNVN  250 (318)
Q Consensus       178 L~~~l~~~~~~~~~r~~a~~~L~~~~---~~~~~~~l~~~l~d-~~~~vr~~a~~~L~~-~--~~~~~~~~L~~~l~~~~  250 (318)
                      +..+..++..+  .|..|+..+....   +...++.+...+.. ++|.+.-..+..++. +  .+++..+.+.....+. 
T Consensus        55 ~~~L~~~~~~E--~r~~a~~ll~~~~~~~~~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~~~~~~~~l~~w~~s~-  131 (213)
T d2b6ca1          55 IEAYYQKTERE--YQYVAIDLALQNVQRFSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTELPTIFALFYGAE-  131 (213)
T ss_dssp             HHHHHTSSSHH--HHHHHHHHHHHTGGGCCHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGGHHHHHHHHTTCS-
T ss_pred             HHHHHcCchHH--HHHHHHHHHHHHHhccCHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCC-
Confidence            33444455544  4999998887764   34556666666644 467777655554432 3  3455667777777766 


Q ss_pred             CCHHHHHHHHHHHhccCCh----hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051          251 EHPMVRHEAAEALGSIADD----QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK  304 (318)
Q Consensus       251 ~~~~vr~~a~~aL~~~~~~----~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~  304 (318)
                       +..+|+.++.+.-.....    .....+...+.|++..|+.++.|+|..+.......
T Consensus       132 -~~w~rR~aiv~~l~~~~~~~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~~p~~  188 (213)
T d2b6ca1         132 -NFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW  188 (213)
T ss_dssp             -SHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred             -CHHHHHHHHHHHHHHHHcccHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHCHHH
Confidence             888888888776665432    24455556778899999999999999998776644

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.90  E-value=0.98  Score=34.21  Aligned_cols=119  Identities=6%  Similarity=-0.156  Sum_probs=73.5

Q ss_pred             HHHHhhcCCCCCHHHHHHHHHHHhccCC---CChHHHHHHhccC-CCHHHHHHHHHHHhc-c--CCCCcHHHHHHhhhcC
Q 021051           20 FLCDRLVDPTQPISERFRALFSLRNLKG---PGPRDALIRATKD-SSNLLAHEAAFALGQ-M--QDAEAIPALEAVLNDF   92 (318)
Q Consensus        20 ~L~~~L~~~~~~~~~r~~A~~~l~~~~~---~~~~~~L~~~l~d-~~~~vr~~a~~aL~~-~--~~~~~~~~L~~~l~~~   92 (318)
                      .+.++..++..  +.|..|+..+.....   +...+.+..++.+ +++.+--..+..++. +  ..+...+.+.+...  
T Consensus        54 l~~~L~~~~~~--E~r~~a~~ll~~~~~~~~~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~~~~~~~~l~~w~~--  129 (213)
T d2b6ca1          54 EIEAYYQKTER--EYQYVAIDLALQNVQRFSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTELPTIFALFYG--  129 (213)
T ss_dssp             HHHHHHTSSSH--HHHHHHHHHHHHTGGGCCHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGGHHHHHHHHTT--
T ss_pred             HHHHHHcCchH--HHHHHHHHHHHHHHhccCHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh--
Confidence            34455566765  899999888866643   2334444455543 456666555544422 2  23344566777777  


Q ss_pred             CCCHHHHHHHHHHHHhcCCC---CcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051           93 SLHPIVRHEAAEALGAIGLE---SNIPLLKNSLVSDPAQEVRETCELALERIE  142 (318)
Q Consensus        93 ~~~~~vR~~a~~~L~~~~~~---~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~  142 (318)
                      +++..+|+.|+-++-.....   +.+-.+...+..|++..|+++..++|..++
T Consensus       130 s~~~w~rR~aiv~~l~~~~~~~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~  182 (213)
T d2b6ca1         130 AENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYS  182 (213)
T ss_dssp             CSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            88988888887665433222   222222323668889999999999999887

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.06  E-value=0.31  Score=45.50  Aligned_cols=123  Identities=14%  Similarity=0.104  Sum_probs=86.6

Q ss_pred             HHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHH
Q 021051          115 IPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYA  194 (318)
Q Consensus       115 ~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~  194 (318)
                      ++.+.+++....+|..|+.|-..|..+.   .                        .++....|...+.+.+.+..+|..
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~---~------------------------~p~f~~~L~~i~~~~~~~~~iR~~   56 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLE---T------------------------QDGFGLTLLHVIASTNLPLSTRLA   56 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHH---T------------------------STTHHHHHHHHHHCTTSCHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHH---c------------------------CCCHHHHHHHHHhcCCCCHHHHHH
Confidence            3455555556678889999999998776   1                        134788899999888888778998


Q ss_pred             HHHHHHhC-----CC--------hh----HHHHHHHHhCCCCHHHHHHHHHHHhccC-------CcchHHHHHHHHhccC
Q 021051          195 ALFALRNH-----GG--------DE----AVSAIIDSLGATSALLKHEVAYVLGQLQ-------NKAASAALSDVLRNVN  250 (318)
Q Consensus       195 a~~~L~~~-----~~--------~~----~~~~l~~~l~d~~~~vr~~a~~~L~~~~-------~~~~~~~L~~~l~~~~  250 (318)
                      |+-.+.+.     ..        ++    ....+...+.+++..+|.....+++.+.       -++.++.|.+.+++. 
T Consensus        57 A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~-  135 (959)
T d1wa5c_          57 GALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND-  135 (959)
T ss_dssp             HHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS-
T ss_pred             HHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCC-
Confidence            88776543     11        11    2244555666778889988888887652       257888888888765 


Q ss_pred             CCHHHHHHHHHHHhcc
Q 021051          251 EHPMVRHEAAEALGSI  266 (318)
Q Consensus       251 ~~~~vr~~a~~aL~~~  266 (318)
                       ++..+..++.+|..+
T Consensus       136 -~~~~~~~~L~~l~~i  150 (959)
T d1wa5c_         136 -DMVTNKGVLTVAHSI  150 (959)
T ss_dssp             -CTTHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHH
Confidence             777888877777554

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.43  E-value=1.7  Score=40.26  Aligned_cols=133  Identities=10%  Similarity=0.042  Sum_probs=85.7

Q ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHhc-CCCCcHHHHHhhhccCC-CHHHHHHHHHHHHHHHh--hhccCccccccccC
Q 021051           82 IPALEAVLNDFSLHPIVRHEAAEALGAI-GLESNIPLLKNSLVSDP-AQEVRETCELALERIEK--LKASGSDGSSMTER  157 (318)
Q Consensus        82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~-~~~~~~~~L~~~l~~d~-~~~vr~~a~~aL~~~~~--~~~~~~~~~~~l~~  157 (318)
                      ++.|.+++.. ..+|..|+.|=..|..+ .+|+....|...+.++. +..+|..|+..|.+.-.  |......       
T Consensus         4 ~~~l~~ll~~-s~~~~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~-------   75 (959)
T d1wa5c_           4 LETVAKFLAE-SVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGN-------   75 (959)
T ss_dssp             HHHHHHHHHH-TTSGGGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSC-------
T ss_pred             HHHHHHHHHH-CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc-------
Confidence            4567777773 57777888888888776 46778888888554333 56899999988876541  3211100       


Q ss_pred             CCCcccCCCCCCC--CC-ccHHHHHHHHcCCCcChHHHHHHHHHHHhC-------CChhHHHHHHHHhCCCCHHHHHHHH
Q 021051          158 SPFMSVDPAAPAS--SC-SSVDMLREVLLGEEKGMYERYAALFALRNH-------GGDEAVSAIIDSLGATSALLKHEVA  227 (318)
Q Consensus       158 ~~~~~~~~~~~~~--~~-~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~-------~~~~~~~~l~~~l~d~~~~vr~~a~  227 (318)
                               ..+.  .+ ..-..|+..+.+++..  +|.....+++.+       ..++.++.+.+.++++++..+..++
T Consensus        76 ---------~~i~~e~k~~Ik~~ll~~l~~~~~~--ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L  144 (959)
T d1wa5c_          76 ---------HLLPANNVELIKKEIVPLMISLPNN--LQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVL  144 (959)
T ss_dssp             ---------BSSCHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHH
T ss_pred             ---------CCCCHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHH
Confidence                     0000  01 1224566666666554  487777777655       3457888898888888887777777


Q ss_pred             HHHhcc
Q 021051          228 YVLGQL  233 (318)
Q Consensus       228 ~~L~~~  233 (318)
                      .+|..+
T Consensus       145 ~~l~~i  150 (959)
T d1wa5c_         145 TVAHSI  150 (959)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777554

>d1l5ja1 a.118.15.1 (A:1-160) Aconitase B, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Aconitase B, N-terminal domain
family: Aconitase B, N-terminal domain
domain: Aconitase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.04  E-value=2.2  Score=30.26  Aligned_cols=93  Identities=26%  Similarity=0.178  Sum_probs=57.9

Q ss_pred             ccCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCCh--HHHHH-----Hhcc---CCCHHHHHHHHHHHhccCCCC
Q 021051           11 FKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGP--RDALI-----RATK---DSSNLLAHEAAFALGQMQDAE   80 (318)
Q Consensus        11 ~~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~--~~~L~-----~~l~---d~~~~vr~~a~~aL~~~~~~~   80 (318)
                      ..++.+.+..|+++|+++..  ..|...+..|...-.|.+  ...+.     ....   +.+..-+..|+..||.+...-
T Consensus        20 lPLdaeq~~eli~llk~~~~--~~~~~lldll~~rv~PGvd~AA~vKA~FL~~I~~g~~~~~~Is~~~A~eLLgtM~GGy   97 (160)
T d1l5ja1          20 KPLDANQMAALVELLKNPPA--GEEEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGY   97 (160)
T ss_dssp             CCCCHHHHHHHHHHHHSCCT--TCHHHHHHHHHHSSCCTTCHHHHHHHHHHHHHHTTSSCBTTBCHHHHHHHHTTSCSST
T ss_pred             CCCCHHHHHHHHHHhcCCCC--ccHHHHHHHHHHhccCCCChHHHHHHHHHHHHHcCCCcCCCcCHHHHHHHHHHhcCCC
Confidence            34677788899999998775  567777777755433322  11121     1111   223445677888888877777


Q ss_pred             cHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 021051           81 AIPALEAVLNDFSLHPIVRHEAAEALGAI  109 (318)
Q Consensus        81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~  109 (318)
                      .+..|++++.  +..  +-..|..+|.+.
T Consensus        98 nV~~LidlL~--d~~--la~~Aa~~Lk~t  122 (160)
T d1l5ja1          98 NIHPLIDALD--DAK--LAPIAAKALSHT  122 (160)
T ss_dssp             THHHHHHGGG--CTT--THHHHHHHHHTC
T ss_pred             cHHHHHHHHc--cHh--hhHHHHHHHhhh
Confidence            7788888776  333  445677777653

>d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889 {Rhodopseudomonas palustris [TaxId: 1076]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: RPA1889-like
domain: Hypothetical protein RPA1889
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=81.75  E-value=0.39  Score=32.75  Aligned_cols=62  Identities=16%  Similarity=0.100  Sum_probs=43.6

Q ss_pred             chHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051          237 AASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE  300 (318)
Q Consensus       237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~  300 (318)
                      .....|..++.++  ++.||..|+..+.....+.+++.|..+.....-..--.|..+|..+..+
T Consensus        55 ~~R~aLl~Ll~h~--n~~VRl~AA~~tL~~~p~~A~~vL~~ia~~~~~~~~~~A~~~L~~~d~G  116 (121)
T d2i9ca1          55 DQRTALLSLFEYP--NMQVRLQAAKLTLAVAPVKAREQLEAIVSSKWFPQAGDAGMCLDLLDDG  116 (121)
T ss_dssp             CGGGGGGGGGGSS--CHHHHHHHHHTTTTTCHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHCC--CHHHHHHHHHHHHhcChHHHHHHHHHHHhCCcCCcchhHHHHHHHHHcC
Confidence            4567788888887  8888888888888887777888888876654323334556666666544

>d1t06a_ a.118.1.17 (A:) Hypothetical protein BC3264 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein BC3264
species: Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]

Probab=80.68  E-value=9.7  Score=28.82  Aligned_cols=82  Identities=7%  Similarity=0.003  Sum_probs=56.3

Q ss_pred             CCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC--------C----hhhHHHHHHhhcCCCHH
Q 021051          218 TSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA--------D----DQSIGLLKEFAKDPEPI  285 (318)
Q Consensus       218 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--------~----~~~~~~L~~~l~~~~~~  285 (318)
                      ++|.+.-..+..+- ...+...+.+...+.+.  +.-+|+.++..+..+-        +    ...++.+...+.|+...
T Consensus        90 ~nW~l~D~~~~~v~-~~~~~~~~~~~~W~~S~--~~w~rRag~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~i~d~~~~  166 (235)
T d1t06a_          90 YFYMLSDYVVAVTL-SESNIAQDVADKWIASG--DELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPER  166 (235)
T ss_dssp             CSHHHHHHTHHHHH-TTSSSHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHH
T ss_pred             chHHHHHHHHHHHH-HhChhHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCccCCCCHHHHHHHHHHHHHhccCchHH
Confidence            56777665443332 13456777888888876  8888888877666541        1    12344445568899999


Q ss_pred             HHHHHHHHHHhchhhhc
Q 021051          286 VSQSCEVALSMLEYEQL  302 (318)
Q Consensus       286 vr~~a~~aL~~l~~~~~  302 (318)
                      |+.+.-|+|..++....
T Consensus       167 v~kAv~W~Lr~ig~~~~  183 (235)
T d1t06a_         167 TKSAMNNFLNTVAISYV  183 (235)
T ss_dssp             HHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHhccCh
Confidence            99999999999877654