Citrus Sinensis ID: 021056

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MGACYFLALSLCFLLIFPDPSGSVKVPGWLSDKEKKTSVLRLKTSTTFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKPEKEPEDDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKPSSVSS
ccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEcccccHHHHHHHHHHHHcccccEEEEccccccccccccEEEccccccccccHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccHHcccccEEEcccccEEEEEEcccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccHHHHHHccccccccccccccccccccHHccccccccccccc
ccHHHHHHHHHHHHHHcccccccccccccccHHHHccEEEEEcccccccccEEEEEccccEEEEEEccccHHHHHHHHHHHcHHHcHcEEEccccccEEEcEEEEcccccccccccHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccccccccccHEEEEEEEHcccccccccccccccccccccccHHHHHHcccEEccccccEEEEEEEccccccccccccccccEEEEcEEEEcEEEEEccccccccccccccccccccHHHHHHHcccccccccEEEcccccccccHHHccccccccccc
MGACYFLALSLCFLlifpdpsgsvkvpgwlsdkekktSVLRLktsttfdpsrvtqlswnprafiykgflsdeeCDHLIDLAKDKLEtsmvadnesgkSIASEvrtssgmflSKAQDEIVASIEARIAAwtflppengeAMQILHYehgqkyephfDFFRDKMNQQLGGHRIATVLMYLSHVekggetvfpnsevsqsrdgnwsecarrgyavkpmkgdALLFFslhpdastdstslhgscpviegekwsATKWIHvrnfdkpekepedddcvdedlNCVVWAkageckknplymvgskssrgycrksckvckpssvss
MGACYFLALSLCFLLIFPDPSGSVKVPgwlsdkekktsvlrlktsttfdpsrvtqlswnPRAFIYKGFLSDEECDHLIDLAKDKLETSmvadnesgksiasevrtssgmFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGEtvfpnsevsqsrdgNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDkpekepedddcvDEDLNCVVWAkageckknplymvgskssrgycrksckvckpssvss
MGACYFLALSLCFLLIFPDPSGSVKVPGWLSDKEKKTSVLRLKTSTTFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFdkpekepedddcvdedLNCVVWAKAGECKKNPLYMVGSKSSRGYCRksckvckpssvss
**ACYFLALSLCFLLIFPDPSGSVKVPGWLS*******VLRLKTSTTFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAK****************************L*KAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVF************WSECARRGYAVKPMKGDALLFFSLHPD******SLHGSCPVIEGEKWSATKWIHVRNF***********CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCK*********
*GACYFLALSLCFLLIFPD********************LRLKTSTTFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETS*************EVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKPEKE******VDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKV*KP*****
MGACYFLALSLCFLLIFPDPSGSVKVPGWLSDKEKKTSVLRLKTSTTFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPN**********WSECARRGYAVKPMKGDALLFFSLHPDA********GSCPVIEGEKWSATKWIHVRNFDK**********VDEDLNCVVWAKAGECKKNPLYMVGS*********************
*GACYFLALSLCFLLIFPDPSGSVKVPGWLSDKEKKTSVLRLKTSTTFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKPEKEPEDDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCK******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGACYFLALSLCFLLIFPDPSGSVKVPGWLSDKEKKTSVLRLKTSTTFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKPEKEPEDDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKPSSVSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query318 2.2.26 [Sep-21-2011]
P54001534 Prolyl 4-hydroxylase subu yes no 0.588 0.350 0.368 3e-29
P16924516 Prolyl 4-hydroxylase subu yes no 0.588 0.362 0.368 4e-29
Q10576559 Prolyl 4-hydroxylase subu yes no 0.628 0.357 0.328 2e-27
Q20065539 Prolyl 4-hydroxylase subu no no 0.619 0.365 0.328 3e-27
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.575 0.342 0.348 4e-27
Q6W3E9544 Prolyl 4-hydroxylase subu no no 0.638 0.373 0.349 5e-27
Q60715534 Prolyl 4-hydroxylase subu no no 0.588 0.350 0.349 1e-26
Q60716537 Prolyl 4-hydroxylase subu yes no 0.575 0.340 0.339 2e-26
Q6W3F0542 Prolyl 4-hydroxylase subu no no 0.638 0.374 0.349 2e-26
O15460535 Prolyl 4-hydroxylase subu no no 0.591 0.351 0.342 2e-26
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function desciption
 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 109/209 (52%), Gaps = 22/209 (10%)

Query: 60  PRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIV 119
           PR   +   +SD E + + DLAK +L  + V D E+GK   ++ R S   +LS  +D +V
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPVV 394

Query: 120 ASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVL 175
           + I  RI   T L     E +Q+ +Y  G +YEPHFDF R    D   +   G+RIAT L
Sbjct: 395 SRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWL 454

Query: 176 MYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTS 235
            Y+S V  GG TVFP  EV              G +V P KG A+ +++L      D ++
Sbjct: 455 FYMSDVSAGGATVFP--EV--------------GASVWPKKGTAVFWYNLFASGEGDYST 498

Query: 236 LHGSCPVIEGEKWSATKWIHVRN--FDKP 262
            H +CPV+ G KW + KW+H R   F +P
Sbjct: 499 RHAACPVLVGNKWVSNKWLHERGQEFRRP 527
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2 Back     alignment and function description
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|Q6W3E9|P4HA3_RAT Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3 PE=2 SV=1 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1 Back     alignment and function description
>sp|Q6W3F0|P4HA3_MOUSE Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2 SV=1 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query318
255552788311 prolyl 4-hydroxylase alpha subunit, puta 0.930 0.951 0.745 1e-130
449522594313 PREDICTED: prolyl 4-hydroxylase subunit 0.952 0.968 0.713 1e-128
50845214316 prolyl 4-hydroxylase [Dianthus caryophyl 0.949 0.955 0.726 1e-127
356550516318 PREDICTED: prolyl 4-hydroxylase subunit 0.962 0.962 0.722 1e-126
225452614316 PREDICTED: prolyl 4-hydroxylase subunit 0.918 0.924 0.737 1e-126
255637501318 unknown [Glycine max] 0.962 0.962 0.718 1e-125
356572148319 PREDICTED: prolyl 4-hydroxylase subunit 0.952 0.949 0.719 1e-124
224141325308 oxidoreductase, 2OG-Fe(II) oxygenase fam 0.937 0.967 0.707 1e-124
215490183318 type 2 proly 4-hydroxylase [Nicotiana ta 0.915 0.915 0.704 1e-123
449461905295 PREDICTED: prolyl 4-hydroxylase subunit 0.896 0.966 0.694 1e-122
>gi|255552788|ref|XP_002517437.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223543448|gb|EEF44979.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/310 (74%), Positives = 262/310 (84%), Gaps = 14/310 (4%)

Query: 8   ALSLCFLLIFPDPSGSVKVPGWLSDKEKKTSVLRLK----TSTTFDPSRVTQLSWNPRAF 63
           AL +C L +FP  S         SD E + SVLRLK    +S  FDP+RVTQLSW+PRAF
Sbjct: 8   ALFICLLSLFPRFS--------YSDNEIQGSVLRLKKGVVSSRIFDPTRVTQLSWHPRAF 59

Query: 64  IYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIE 123
           +YKGFLS EECDHLIDLA+DKLE SMVADNESGKSI SEVRTSSGMF++KAQDEIVA IE
Sbjct: 60  LYKGFLSYEECDHLIDLARDKLEKSMVADNESGKSIESEVRTSSGMFIAKAQDEIVADIE 119

Query: 124 ARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEK 183
           ARIAAWTFLP ENGE+MQILHYEHGQKYEPHFD+F DK NQ+LGGHR+ATVLMYLS+VEK
Sbjct: 120 ARIAAWTFLPEENGESMQILHYEHGQKYEPHFDYFHDKANQELGGHRVATVLMYLSNVEK 179

Query: 184 GGETVFPNSE--VSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCP 241
           GGETVFPN+E  +SQ ++ +WS+CA+ GYAVKP KGDALLFFSLHPDA+TDS SLHGSCP
Sbjct: 180 GGETVFPNAEGKLSQPKEDSWSDCAKGGYAVKPEKGDALLFFSLHPDATTDSDSLHGSCP 239

Query: 242 VIEGEKWSATKWIHVRNFDKPEKEPEDDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSR 301
           VIEGEKWSATKWIHVR+F+K  K+    DCVDE+ +C +WAKAGECKKNPLYM+GS  + 
Sbjct: 240 VIEGEKWSATKWIHVRSFEKSFKQLGKGDCVDENDHCPLWAKAGECKKNPLYMIGSGGAN 299

Query: 302 GYCRKSCKVC 311
           GYCRKSCKVC
Sbjct: 300 GYCRKSCKVC 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449522594|ref|XP_004168311.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|50845214|gb|AAT84604.1| prolyl 4-hydroxylase [Dianthus caryophyllus] Back     alignment and taxonomy information
>gi|356550516|ref|XP_003543632.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Glycine max] Back     alignment and taxonomy information
>gi|225452614|ref|XP_002281420.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296087745|emb|CBI35001.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255637501|gb|ACU19077.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356572148|ref|XP_003554232.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2-like [Glycine max] Back     alignment and taxonomy information
>gi|224141325|ref|XP_002324024.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Populus trichocarpa] gi|222867026|gb|EEF04157.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|215490183|dbj|BAG86625.1| type 2 proly 4-hydroxylase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|449461905|ref|XP_004148682.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query318
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.805 0.888 0.678 4.2e-98
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.842 0.899 0.572 2e-81
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.811 0.862 0.569 3e-78
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.638 0.7 0.586 2e-63
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.638 0.707 0.576 5.4e-63
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.650 0.711 0.552 2.4e-60
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.776 0.854 0.492 2.4e-60
TAIR|locus:2131884291 AT4G25600 [Arabidopsis thalian 0.578 0.632 0.396 5.3e-47
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.685 0.770 0.441 3.8e-46
TAIR|locus:1005716656274 P4H13 "prolyl 4-hydroxylase 13 0.798 0.927 0.362 1.2e-40
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 946 (338.1 bits), Expect = 4.2e-98, Sum P(2) = 4.2e-98
 Identities = 179/264 (67%), Positives = 214/264 (81%)

Query:    45 STTFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMV-ADNESGKSIASEV 103
             S + DP+R+TQLSW PRAF+YKGFLSDEECDHLI LAK KLE SMV AD +SG+S  SEV
Sbjct:    24 SFSVDPTRITQLSWTPRAFLYKGFLSDEECDHLIKLAKGKLEKSMVVADVDSGESEDSEV 83

Query:   104 RTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 163
             RTSSGMFL+K QD+IVA++EA++AAWTFLP ENGEA+QILHYE+GQKY+PHFD+F DK  
Sbjct:    84 RTSSGMFLTKRQDDIVANVEAKLAAWTFLPEENGEALQILHYENGQKYDPHFDYFYDKKA 143

Query:   164 QQLGGHRIATVLMYLSHVEKGGETVFPN--SEVSQSRDGNWSECARRGYAVKPMKGDALL 221
              +LGGHRIATVLMYLS+V KGGETVFPN   +  Q +D +WS+CA++GYAVKP KGDALL
Sbjct:   144 LELGGHRIATVLMYLSNVTKGGETVFPNWKGKTPQLKDDSWSKCAKQGYAVKPRKGDALL 203

Query:   222 FFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFXXXXXXXXXXXXXXXXLNCVVW 281
             FF+LH + +TD  SLHGSCPVIEGEKWSAT+WIHVR+F                 +C  W
Sbjct:   204 FFNLHLNGTTDPNSLHGSCPVIEGEKWSATRWIHVRSFGKKKLVCVDDHE-----SCQEW 258

Query:   282 AKAGECKKNPLYMVGSKSSRGYCR 305
             A AGEC+KNP+YMVGS++S G+CR
Sbjct:   259 ADAGECEKNPMYMVGSETSLGFCR 282
GO:0005506 "iron ion binding" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009827 "plant-type cell wall modification" evidence=RCA
GO:0009860 "pollen tube growth" evidence=RCA
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131884 AT4G25600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1005716656 P4H13 "prolyl 4-hydroxylase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 1e-138
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 7e-43
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 7e-10
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-09
smart0025433 smart00254, ShKT, ShK toxin domain 4e-05
pfam0154937 pfam01549, ShK, ShK domain-like 6e-04
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  394 bits (1013), Expect = e-138
 Identities = 183/289 (63%), Positives = 220/289 (76%), Gaps = 3/289 (1%)

Query: 26  VPGWLSDKEKKTSVLRLKTSTTFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKL 85
           VP  L  +     V  +  +  F+ SRV  +SW PR F+YKGFLSD ECDHL+ LAK K+
Sbjct: 20  VPLLLLGEAGDDGVGAVAAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKI 79

Query: 86  ETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHY 145
           + SMVADN+SGKS+ SEVRTSSGMFL K QD +V+ IE RIAAWTFLP EN E +QIL Y
Sbjct: 80  QRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERIAAWTFLPEENAENIQILRY 139

Query: 146 EHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSE--VSQSRDGNWS 203
           EHGQKYEPHFD+F DK+NQ LGGHR ATVLMYLS V+KGGETVFPN+E   +Q +D  +S
Sbjct: 140 EHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFS 199

Query: 204 ECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKPE 263
           ECA +G AVKP+KGDA+LFFSLH D   D  SLHGSCPVIEGEKWSA KWIH+R+++ P 
Sbjct: 200 ECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYEHPP 259

Query: 264 KEPEDDD-CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVC 311
             P+D + C D+  +C  WA AGEC+KNP+YMVG++ + G CRKSC VC
Sbjct: 260 VVPKDTEGCADKSAHCAEWAAAGECEKNPVYMVGAEGAPGNCRKSCGVC 308

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|214586 smart00254, ShKT, ShK toxin domain Back     alignment and domain information
>gnl|CDD|216565 pfam01549, ShK, ShK domain-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 318
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.95
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.72
PHA02813 354 hypothetical protein; Provisional 99.71
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.64
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.61
smart0025433 ShKT ShK toxin domain. ShK toxin domain 98.96
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 98.88
PF0154938 ShK: ShK domain-like; InterPro: IPR003582 The ShK 98.64
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.56
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 98.51
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.49
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 98.22
PHA02866 333 Hypothetical protein; Provisional 98.11
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 97.96
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 97.74
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 97.69
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 97.51
KOG3844 476 consensus Predicted component of NuA3 histone acet 97.39
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 97.28
TIGR02466201 conserved hypothetical protein. This family consis 97.07
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 96.65
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 96.34
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 95.85
PHA02923 315 hypothetical protein; Provisional 94.82
KOG3200224 consensus Uncharacterized conserved protein [Funct 94.62
COG3826236 Uncharacterized protein conserved in bacteria [Fun 93.17
KOG3371 243 consensus Uncharacterized conserved protein [Funct 91.39
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 90.06
PLN02485329 oxidoreductase 89.28
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 88.7
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 87.37
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 86.98
PLN02904357 oxidoreductase 86.77
KOG3959306 consensus 2-Oxoglutarate- and iron-dependent dioxy 86.69
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 86.42
PLN02216357 protein SRG1 85.7
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 85.67
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 84.94
PLN02403303 aminocyclopropanecarboxylate oxidase 84.23
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 84.16
PLN02276361 gibberellin 20-oxidase 83.97
PLN02997325 flavonol synthase 83.92
PLN02365300 2-oxoglutarate-dependent dioxygenase 83.7
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 83.49
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 83.17
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 81.79
PF06822266 DUF1235: Protein of unknown function (DUF1235); In 81.38
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 81.31
PLN02254358 gibberellin 3-beta-dioxygenase 80.82
PLN02947374 oxidoreductase 80.8
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7e-79  Score=572.16  Aligned_cols=272  Identities=65%  Similarity=1.166  Sum_probs=251.1

Q ss_pred             cCCCCCcCCceeEEeccCCCEEEEcCCCCHHHHHHHHHHHhcccccceeEeCCCCcccccceecccccccCCcchHHHHH
Q 021056           42 LKTSTTFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVAS  121 (318)
Q Consensus        42 ~~~~~~~~p~kve~ls~~P~i~ii~nfLs~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~v~~~  121 (318)
                      ...+..++|.|||+||++|+||+|+||||++||++||+++++++++|+++++.+|+...+++|+|+++|++..+++++++
T Consensus        36 ~~~~~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~  115 (310)
T PLN00052         36 VAAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSR  115 (310)
T ss_pred             ccCCCCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHH
Confidence            33455789999999999999999999999999999999999999999998877777778899999999998877999999


Q ss_pred             HHHHHHHhhCCCCCCCccceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcc--cccCC
Q 021056          122 IEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEV--SQSRD  199 (318)
Q Consensus       122 i~~Ri~~~~glp~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~--~~~~~  199 (318)
                      |++||++++++|.++.|++||+||++||+|++|+|++.+..+...+++|++|+|+||||+++||||+||..+.  .++++
T Consensus       116 I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~  195 (310)
T PLN00052        116 IEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKD  195 (310)
T ss_pred             HHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccc
Confidence            9999999999999999999999999999999999999765444567899999999999999999999999854  45677


Q ss_pred             CCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeEeeccCCCCCCC-CCCCCcccCCcCh
Q 021056          200 GNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKPEKE-PEDDDCVDEDLNC  278 (318)
Q Consensus       200 ~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~~~~~~~~-~~~~~C~d~~~~C  278 (318)
                      +.|++|++.+++|+|++|+||||+|+++||+.|++++|+||||++|+||++|+|||.+++..+... .++..|.|.+++|
T Consensus       196 ~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~~~~~~~~~~~~C~d~~~~C  275 (310)
T PLN00052        196 DTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYEHPPVVPKDTEGCADKSAHC  275 (310)
T ss_pred             cchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeecccccCCCcCCccCCCCcCCcccC
Confidence            889999999999999999999999999999999999999999999999999999999999776443 4567999999999


Q ss_pred             HhHhhcCcCccCccccccccCCcchhhhhcCcCCC
Q 021056          279 VVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKP  313 (318)
Q Consensus       279 ~~wa~~geC~~np~~m~~~~~~~~~C~~sC~~C~~  313 (318)
                      +.||+.|||++||.||+|+++.+++|+|||+.|..
T Consensus       276 ~~Wa~~GeC~~Np~yM~g~~~~~~~C~~SC~~C~~  310 (310)
T PLN00052        276 AEWAAAGECEKNPVYMVGAEGAPGNCRKSCGVCDS  310 (310)
T ss_pred             hhHhhCCccccChHhhcCCCCCCChhhccccccCC
Confidence            99999999999999999999999999999999973

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00254 ShKT ShK toxin domain Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01549 ShK: ShK domain-like; InterPro: IPR003582 The ShK toxin domain is found in metridin, a toxin from Metridium senile (brown sea anemone) and in ShK, a structurally defined polypeptide from the sea anemone Stoichactis helianthus (Stichodactyla helianthus) (Caribbean sea anemone) Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG3371 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 1e-71
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 1e-71
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 1e-71
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 1e-69
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 1e-32
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  266 bits (680), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 121/207 (58%), Positives = 159/207 (76%), Gaps = 3/207 (1%)
Query: 52  RVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFL 111
            V  LSW+PRAF+ K FLSDEECD++++ A+ K+  S V DNESGKS+ SE+RTS+G + 
Sbjct: 21  EVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWF 80
Query: 112 SKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQ--QLGGH 169
           +K +D +++ IE R+A  T +P EN E +Q+LHY  GQKYEPH+D+F D +N   + GG 
Sbjct: 81  AKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 170 RIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDA 229
           R+ T+LMYL+ VE+GGETV PN+E   + DG WSECA+RG AVKP+KGDAL+F+SL PD 
Sbjct: 141 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDG-WSECAKRGLAVKPIKGDALMFYSLKPDG 199
Query: 230 STDSTSLHGSCPVIEGEKWSATKWIHV 256
           S D  SLHGSCP ++G+KWSATKWIHV
Sbjct: 200 SNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 1e-100
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 2e-89
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 3e-12
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  292 bits (750), Expect = e-100
 Identities = 121/213 (56%), Positives = 159/213 (74%), Gaps = 3/213 (1%)

Query: 50  PSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGM 109
              V  LSW+PRAF+ K FLSDEECD++++ A+ K+  S V DNESGKS+ SE+RTS+G 
Sbjct: 10  RGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGT 69

Query: 110 FLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQ--QLG 167
           + +K +D +++ IE R+A  T +P EN E +Q+LHY  GQKYEPH+D+F D +N   + G
Sbjct: 70  WFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHG 129

Query: 168 GHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHP 227
           G R+ T+LMYL+ VE+GGETV PN+E   + DG WSECA+RG AVKP+KGDAL+F+SL P
Sbjct: 130 GQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDG-WSECAKRGLAVKPIKGDALMFYSLKP 188

Query: 228 DASTDSTSLHGSCPVIEGEKWSATKWIHVRNFD 260
           D S D  SLHGSCP ++G+KWSATKWIHV    
Sbjct: 189 DGSNDPASLHGSCPTLKGDKWSATKWIHVAPIG 221
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Length = 247 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query318
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 99.97
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.9
2k72_A37 Matrix metalloproteinase-23; toxin, metalloproteas 99.42
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 99.16
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.54
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.74
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 97.69
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 97.68
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 97.19
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 97.05
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 97.0
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 96.98
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 96.61
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 96.16
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 96.0
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 95.8
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 89.99
2lg4_A40 Aurelin; antimicrobial protein; NMR {Aurelia aurit 88.56
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 84.78
1bgk_A37 BGK; neurotoxin, potassium channel inhibitor; NMR 83.58
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 82.37
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=1.3e-53  Score=385.01  Aligned_cols=217  Identities=55%  Similarity=0.995  Sum_probs=196.0

Q ss_pred             CCCcCCceeEEeccCCCEEEEcCCCCHHHHHHHHHHHhcccccceeEeCCCCcccccceecccccccCCcchHHHHHHHH
Q 021056           45 STTFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEA  124 (318)
Q Consensus        45 ~~~~~p~kve~ls~~P~i~ii~nfLs~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~v~~~i~~  124 (318)
                      ...++|.|||+||++|+|++|+||||++||++||++++++++++.+.++.+|..+.+++|+|+++|++..+++++++|++
T Consensus         5 ~~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~   84 (224)
T 2jig_A            5 LKEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEK   84 (224)
T ss_dssp             --CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHH
T ss_pred             cccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHH
Confidence            45678999999999999999999999999999999999999999998877677778889999999999766899999999


Q ss_pred             HHHHhhCCCCCCCccceEEecCCCCCcccccCCCCccccc--cCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCc
Q 021056          125 RIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQ--QLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNW  202 (318)
Q Consensus       125 Ri~~~~glp~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~--~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~  202 (318)
                      ||.+++++|...+|++||+||++|++|++|+|++....+.  ..+++|++|+|+||||+++||||+||... .+++++.|
T Consensus        85 ri~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~-~~~~~~~~  163 (224)
T 2jig_A           85 RVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAE-QKVTGDGW  163 (224)
T ss_dssp             HHHHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSS-SCCCSTTS
T ss_pred             HHHHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCcc-cccccccc
Confidence            9999999999999999999999999999999998653221  34579999999999999999999999875 24567789


Q ss_pred             chhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeEeeccCCCC
Q 021056          203 SECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKP  262 (318)
Q Consensus       203 ~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~~~~~  262 (318)
                      ++|.+.+++|+|++|+||||+|++++|++|++++|+||||++|+||++++||+.+++...
T Consensus       164 ~~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~~~~~~~  223 (224)
T 2jig_A          164 SECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIGGR  223 (224)
T ss_dssp             CTTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEEEEEEEEEESSCCCC-
T ss_pred             cccccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceEEEEEEeEEcCCcCCC
Confidence            999988999999999999999999999999999999999999999999999999987653
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2k72_A Matrix metalloproteinase-23; toxin, metalloprotease, MMP23, potassium channel, cleavage on PAIR of basic residues, glycoprotein, hydrolase; NMR {Synthetic} Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita} Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1bgk_A BGK; neurotoxin, potassium channel inhibitor; NMR {Bunodosoma granulifera} SCOP: g.19.1.1 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query318
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 97.82
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 97.71
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 96.83
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 96.7
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 89.04
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 85.5
d1bgka_37 Sea anemone toxin k {Sea anemone (Bunodosoma granu 81.03
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.00015  Score=63.68  Aligned_cols=189  Identities=15%  Similarity=0.122  Sum_probs=92.6

Q ss_pred             eeEEeccCCCEEEEcCCCCHHHHHHHHHHHhcccccc------eeEeCC---CCcccccceecccccccCCcchHHH---
Q 021056           52 RVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETS------MVADNE---SGKSIASEVRTSSGMFLSKAQDEIV---  119 (318)
Q Consensus        52 kve~ls~~P~i~ii~nfLs~~EC~~Li~~a~~~l~~s------~v~~~~---~g~~~~~~~R~s~~~~l~~~~~~v~---  119 (318)
                      .++....+.+ ++++|||+++||+.|.+..+..++..      ......   ................+. ..+.+.   
T Consensus        15 q~~~f~~~Gy-vvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   92 (296)
T d2a1xa1          15 QRKFYEENGF-LVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQ-EDKELFRYC   92 (296)
T ss_dssp             HHHHHHHHSE-EEETTCSCHHHHHHHHHHHHHHHTTSCCCSSCEEECCEEECCCE-----EECCEEECCT-TSHHHHHHH
T ss_pred             HHHHHHHCCE-EEccCcCCHHHHHHHHHHHHHHHhhccccccccccccccccccccCccccchhhhhhhh-hchhHHhhc
Confidence            3344444555 58999999999999988876522110      000000   000000000000000011 112222   


Q ss_pred             --HHHHHHHHHhhCCCCCCCccceEEec-CCCC---CcccccCCCCccccccCCCceEEEEEEEecCCC-CCcceee-cC
Q 021056          120 --ASIEARIAAWTFLPPENGEAMQILHY-EHGQ---KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVE-KGGETVF-PN  191 (318)
Q Consensus       120 --~~i~~Ri~~~~glp~~~~E~~qv~rY-~~G~---~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~-eGGeT~F-p~  191 (318)
                        ..|.+.++.+.|-........-+.+. ..|.   ...||.|.....   .......+|+.|+|+|+. +.|.+.| |.
T Consensus        93 ~~~~i~~~~~~llg~~~~~~~~~~~~k~p~~~~~~~~~~wHqD~~~~~---~~~~~~~~~~wi~L~d~~~~nG~l~vipG  169 (296)
T d2a1xa1          93 TLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFP---FRPSDLIVCAWTAMEHISRNNGCLVVLPG  169 (296)
T ss_dssp             HCHHHHHHHHHHHCSSEEEEEEEEEEECCC--------CCBCGGGGCC---EECGGGEEEEEEESSCBCTTBTCEEECTT
T ss_pred             ccHHHHHHHHHhhccccceecccccccccccccccccCCcccCccccc---cCCccccceeeEeeeeccccccccceecc
Confidence              23445556666632111111112232 2332   245899975321   122456889999999974 5566766 54


Q ss_pred             Cccc--ccCCCCc------------ch--hcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccc-cceEEEEeeE
Q 021056          192 SEVS--QSRDGNW------------SE--CARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIE-GEKWSATKWI  254 (318)
Q Consensus       192 ~~~~--~~~~~~~------------~~--c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~-G~K~i~~~Wi  254 (318)
                      ....  .+.....            .+  -....+.+.-++|++|||.         .+++|++.|-.+ ..|+++..-+
T Consensus       170 SHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~k~Gdvli~~---------~~l~Hgs~~N~S~~~R~~l~~~y  240 (296)
T d2a1xa1         170 THKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFH---------PLLIHGSGQNKTQGFRKAISCHF  240 (296)
T ss_dssp             GGGSCCCCCCC-----------CCCCC-CCCSCCEEECBCTTCEEEEC---------TTCCEEECCBCSSSCEEEEEEEE
T ss_pred             cccccccccccccccCCcccccccccchhhccceEEeeecCCcEEEEC---------CCeeecCCCCCCcCceEEEEEEE
Confidence            3210  0000000            00  0012466778999999994         589999998664 5788877655
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1bgka_ g.19.1.1 (A:) Sea anemone toxin k {Sea anemone (Bunodosoma granulifera), BGK [TaxId: 31164]} Back     information, alignment and structure