Citrus Sinensis ID: 021080

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHccccccccccHHcccHHHHHHHcccccHHHHHHccccccEEEEEEEcccccEEEEccccccEEEcccccccccccccEEEEEEccEEEEEcccccccccccccccccEEEEEEccccEEEEEEccccccccEEEEEEcccccEEEcccccccccccEEEEEEccEEEEEEccccEEEEEEcccccEEEcccccEEccEEEEccEEEEEEccEEEEEEcccEEEEEEcccccccccEEEEEEccEEEEEEcccccccccEEEEccccEEEEEcccccccEEEccccccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHcccHHccHHHHHHHHHHHHHHccHHHHHHHHHcccccEEEEEEEcccccHHHcccHHccccEccccccccccccccccEEEEccEEEEEEccccccccccccccEEEEEEccccEEEEEEccccccccccEEEEEccccccEEEcccccccccccccEEEEccEEEEEcccccccEEEcccccEEcccccccEEccEEEEccEEEEEcccEEEEccccEEEEEcccccccccccEEEEEccccEEEEEcccccccccEEEccEEEEEEEccccccccccccccccccccEEEEEEEEEc
Coil and Loop (DISEMBL)
mselieglPDAVALRClarvpfflhpklelVSRSWRAAIRSPELFKARqevgssenllcvcafdpenlwqlydplrdlwitlpvlpskirhlahfgvvsTAGKLFvlgggsdavdpltgdqdgsfatnevwsydpvtrgfTSCRKSIsqaemydpekdvwvpipdlhrthnsactgvVIGGKVHVLHKGLSTVQVLDhmglgwtvedygwlqgpmaiVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGgvigpdrwnwdikpmsdvdvltvgaerptwrqvspmtrcrgtilgctqlri
Flexible Loop (DISEMBL)
MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTgdqdgsfatnevwsydpvtRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTvgaerptwrqvspmtrcrgtilgctqlri
Low Complexity Region (SEG)
MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAmigmgddiyviggvigPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI
Disordered region (IsUnstruct)
*****EGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCT****
Disordered Region (DISOPRED)
*SELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI
Disordered Region (DISEMBL)
MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI
Disordered Region (DISPRO)
**ELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
Q9M1W7	352	F-box/kelch-repeat protei	yes	no	1.0	0.900	0.669	1e-134
Q0WW40	383	F-box/kelch-repeat protei	no	no	0.965	0.798	0.25	5e-16
Q9CAG8	376	F-box/kelch-repeat protei	no	no	0.567	0.478	0.304	7e-13
Q8LAW2	372	F-box protein AFR OS=Arab	no	no	0.835	0.712	0.237	1e-12
Q93W93	434	F-box/kelch-repeat protei	no	no	0.589	0.430	0.298	1e-12
Q9LYY3	347	F-box/kelch-repeat protei	no	no	0.312	0.285	0.371	2e-10
Q9FKJ0	393	F-box/kelch-repeat protei	no	no	0.772	0.623	0.234	2e-10
Q9LYY5	354	Putative F-box/kelch-repe	no	no	0.334	0.299	0.324	2e-09
Q9LM55	475	F-box/kelch-repeat protei	no	no	0.261	0.174	0.376	4e-09
Q9LYY7	335	Putative F-box/kelch-repe	no	no	0.337	0.319	0.330	4e-09

>sp|Q9M1W7|SKI30_ARATH F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2

 Score =  479 bits (1233), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/345 (66%), Positives = 271/345 (78%), Gaps = 28/345 (8%)

Query: 1   MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCV 60
           MS L++G+P+AVALRCLA VP  LHP LELVSRSWRAAIRS ELF+ R+E+ SSE+LLCV
Sbjct: 8   MSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 67

Query: 61  CAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGD 120
           CAFDPEN+WQ+Y P  D W+TLP+LPS+IRHLAHFG V+TAG LFVLGGGSDAV P+TGD
Sbjct: 68  CAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 127

Query: 121 QDGSFATNEVWSYDPVTR----------------------------GFTSCRKSISQAEM 152
            DG+FAT++VWSYD V R                            GFT+CRKSIS AEM
Sbjct: 128 HDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEM 187

Query: 153 YDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ 212
           YDPE DVW  IPDLH+THNSAC+G+V+ GKVHVLHKGLSTVQVL+ + LGW V+DYGW Q
Sbjct: 188 YDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQ 247

Query: 213 GPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD 272
           GPM +V D +Y+MSHGL+ KQ  D  K+VASASEF+RRIG AM  + D++ ++GGVIGPD
Sbjct: 248 GPMVVVEDVLYVMSHGLVFKQEGDTWKMVASASEFKRRIGMAMTSLSDEVLIVGGVIGPD 307

Query: 273 RWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI 317
           R NWDIKP+SDVD LTVG +RP WR V+PMTRCRGTILGCTQL I
Sbjct: 308 RLNWDIKPLSDVDALTVGNDRPAWRSVAPMTRCRGTILGCTQLTI 352

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WW40|FBK5_ARATH F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 148/376 (39%), Gaps = 70/376 (18%)

Query: 4   LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAF 63
           +I GLPD +ALRC+A++    H  LE VSR WR  +R  +    +   G S + L V   
Sbjct: 8   IIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFVLTE 67

Query: 64  DPENLWQLYDPLRDLWITLPVLPSKIR--HLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQ 121
             +N W  YDP  D W  LP   +     H + F  V  +  L V+ GG  A    +   
Sbjct: 68  RSKNQWVAYDPEADRWHPLPRTRAVQDGWHHSGFACVCVSNCLLVI-GGCYAPSVSSFPH 126

Query: 122 DGSFATNEVWSYDPVTRGFT------------SC-----------------RKSISQAEM 152
                T +V  +DP  + +             +C                  + I  AE+
Sbjct: 127 QKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGGRNLTHSRGIPSAEV 186

Query: 153 YDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGL-----STVQVLDHMGLGW-TVE 206
           YDP  D W  +P + R     C+G+   G  HVL   +     ++ +V +   + W TVE
Sbjct: 187 YDPVADRWEELPAMPRPQMD-CSGLSYRGCFHVLSDQVGFAEQNSSEVFNPRDMTWSTVE 245

Query: 207 DYGWLQGPMAIV-----HDSVY-LMSHGLIIKQHRDVRK------------VVASASEFR 248
           D       M        +D VY ++  G  + + RD  +            V+ +     
Sbjct: 246 DVWPFSRAMQFAVQVMKNDRVYTIVDWGESLIKTRDTDEGEWYNVGSVPSVVLPNHPREL 305

Query: 249 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA-------ERP-TWRQVS 300
              G+    + +++YVIGG +      W+       D++ +         +RP  WR+  
Sbjct: 306 EAFGYGFAALRNELYVIGGKV----LKWEESGAGRFDIVRLPVVRVCNPLDRPLNWRETK 361

Query: 301 PMT-RCRGTILGCTQL 315
           PM     G+I+GC  L
Sbjct: 362 PMCIPAGGSIIGCVSL 377

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 84/207 (40%), Gaps = 27/207 (13%)

Query: 4   LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAF 63
           LI GLPD VA +CLA VP    P +  V + WR  ++S E    R+  G  E  L V   
Sbjct: 39  LIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTM 98

Query: 64  DP---ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGD 120
           +    +N W++ D L     +LP +P   +    F VV   GKL V+ G       L   
Sbjct: 99  NAGGKDNRWEVMDCLGQKLSSLPPMPGPAK--TGFKVVVVDGKLLVIAGCCMINGSLVAS 156

Query: 121 QD---------------------GSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDV 159
            D                       FA  EV  +  V  G     +S+S AE+YDPE   
Sbjct: 157 ADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGGHGVDGESLSSAEVYDPETCT 216

Query: 160 WVPIPDLHRTHNSACTGVVIGGKVHVL 186
           W  I  L R     C      GK++V+
Sbjct: 217 WTFIESLRRPR-WGCFASAFNGKLYVM 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAW2|AFR_ARATH F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 117/307 (38%), Gaps = 42/307 (13%)

Query: 4   LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAF 63
           LI GLP+ +A  CL R+P+  H     VS SW   I +P    ++Q +  S   L V AF
Sbjct: 28  LISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFAF 87

Query: 64  DPENL---WQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTA-----GKLFVLGGGS---- 111
           +       WQ  D     W  LP +P+    ++    +S A     GKLFVLGGG     
Sbjct: 88  NKSTARIQWQSLDLASGRWFVLPPMPNSFTKISSPHALSCASMPRQGKLFVLGGGDVNRS 147

Query: 112 -----------DAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVW 160
                        + P+   +    + N       V        ++ ++ E YDP+ D W
Sbjct: 148 AVVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGSVGGNGEATTEVESYDPDNDTW 207

Query: 161 VPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHD 220
             +  L        + V+  GK   + +G +   +   MG  +  ++  W +    +   
Sbjct: 208 TVVKKLPMVLAKYDSAVI--GKEMCVTEGWAWPFMFPPMGQVYDSDEGTWREMSGGMKEG 265

Query: 221 ----SVYLMSHGLIIKQHRDV-RKVVASASEFRRRIG------------FAMIGMGDDIY 263
               SV +     +I +H D   KV  S  +  R +             FA+ G  D ++
Sbjct: 266 WTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKLQGEKMRRPFAVTGADDRVF 325

Query: 264 VIGGVIG 270
           V+   I 
Sbjct: 326 VVASGIN 332

Component of SCF (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyls elongation in response to red and far-red light exposure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 90/218 (41%), Gaps = 31/218 (14%)

Query: 4   LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAF 63
           L+ GLPD +A+ CL RVP   H KL LV + W         +  R+ +G SE  + V   
Sbjct: 78  LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKR 137

Query: 64  DPENL--WQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQ 121
           D +    W  +DP+  LW  LP +P +      FG    +G    L GG    DPL G  
Sbjct: 138 DRDGKISWNTFDPISQLWQPLPPVPREYSEAVGFGCAVLSGCHLYLFGGK---DPLRGSM 194

Query: 122 DGSFATN---EVWSYDP---VTRGFTSC-----------------RKSISQAEMYDPEKD 158
                 N     W   P     R F  C                 ++++  AE+YDP K+
Sbjct: 195 RRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAEVYDPNKN 254

Query: 159 VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVL 196
            W  I D+  T      GVV   K  +  KGL + Q++
Sbjct: 255 RWSFIADMS-TAMVPLIGVVYDKKWFL--KGLGSHQLV 289

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYY3|FK110_ARATH F-box/kelch-repeat protein At5g03020 OS=Arabidopsis thaliana GN=At5g03020 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 6/105 (5%)

Query: 10  DAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVC---AFDPE 66
           D VAL C AR+  F +P L LVS+ +R  I SPEL   R  +G  EN LCVC     +P 
Sbjct: 22  DDVALDCRARISRFHYPTLSLVSKGFRTLIASPELEATRSFIGKPENHLCVCLRLYKNPN 81

Query: 67  NLWQLYDPL--RDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGG 109
            LW ++ P+  + L   +P  P++ ++  +  VVS   +++++GG
Sbjct: 82  PLWFIFSPIPKQKLKPIVPWFPNQ-QYPQYPTVVSNGSQIYIIGG 125

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKJ0|FK132_ARATH F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana GN=At5g60570 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 132/324 (40%), Gaps = 79/324 (24%)

Query: 4   LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENL-LCVCA 62
           ++ GL D VAL CLA VP   +P L  V++ +   I S  LF  R+E+G  E L   VC 
Sbjct: 49  VLPGLIDDVALNCLAWVPRSDYPSLSCVNKKYNKLINSGHLFALRKELGIVEYLVFMVC- 107

Query: 63  FDPENLWQLYDPLRDLWITLPVLP-SKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQ 121
            DP   W ++ P++  W+ LP +P  +  + A    ++   +L V            G +
Sbjct: 108 -DPRG-WLMFSPMKKKWMVLPKMPCDECFNHADKESLAVDDELLVF-----------GRE 154

Query: 122 DGSFATNEVWSYDPVTRGFTSCR----------------------------KSISQAEMY 153
              FA   +W Y   +R +  C                               ++ AE+Y
Sbjct: 155 LFQFA---IWKYSLRSRCWVKCEGMHRPRCLFASGSLGGIAIVAGGTDMNGNILASAELY 211

Query: 154 DPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW--- 210
           D     W  +P++H +    C+G  + GK +V+  G+S+  V    G  + +E   W   
Sbjct: 212 DSSSGRWEMLPNMH-SPRRLCSGFFMDGKFYVI-GGMSSPNVSVTFGEEFDLETRKWRKI 269

Query: 211 ----------LQGP--MAIVHDSVYLMSHGL-IIKQHRDVRK----------VVASASEF 247
                      Q P  + +V++ ++ + +   ++K++  V+           +V S++ +
Sbjct: 270 EGMYPNVNRAAQAPPLVVVVNNELFTLEYSTNMVKKYDKVKNKWEVMGRLPPMVDSSNGW 329

Query: 248 RRRIGFAMIGMGDDIYVIGGVIGP 271
               G A    GD + V  G  GP
Sbjct: 330 ----GLAFKPCGDQLLVFCGQRGP 349

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYY5|FK109_ARATH Putative F-box/kelch-repeat protein At5g03000 OS=Arabidopsis thaliana GN=At5g03000 PE=4 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 4   LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVC-- 61
           +   LPD + L CLARV  F  P L LV++ +++ I SP+L   R  +G +EN L VC  
Sbjct: 39  VFSSLPDELILNCLARVSRFYRPSLSLVNKEFQSLIASPDLEATRSRIGVTENHLYVCLE 98

Query: 62  --AFDPENLWQLYDPLRDLWITLPVLPS-KIRHLAHFGVVSTAGKLFVLGG 109
               +P   W    P+       P++PS   +H      VS   +++++GG
Sbjct: 99  SNKNNPNPRWFTLAPIPKEQKVKPIIPSFPYQHPTSSTFVSIGSEIYIIGG 149

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LM55|FBK8_ARATH F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 4   LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAF 63
           LI  LPD ++++ LAR+P   +  + LVSR WR+A+ + E++  R+E+G +E  L V   
Sbjct: 43  LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102

Query: 64  DPEN--LWQLYDPLRDLWITLPVLP 86
             E+  LW   DP+   W  LP +P
Sbjct: 103 GHEDKLLWYALDPVSTKWQRLPPMP 127

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYY7|FK107_ARATH Putative F-box/kelch-repeat protein At5g02980 OS=Arabidopsis thaliana GN=At5g02980 PE=4 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 5/112 (4%)

Query: 2   SELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVC 61
           S     LP  + L CLARV  + +P L LVS+ +++ I S EL+  R  +G +E  L +C
Sbjct: 11  SRTFSSLPYDIILNCLARVSRYHYPTLSLVSKEFQSLIASRELYATRSRIGKTERFLYIC 70

Query: 62  ----AFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGG 109
                 +P+  W    P+ +    LPV P    HL    V ST  +++++GG
Sbjct: 71  LNLTKSNPKYRWFTLPPVPNEQKLLPV-PLFTYHLNSSTVSSTDSEIYIIGG 121

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
224085497	345	f-box family protein [Populus trichocarp	1.0	0.918	0.811	1e-164
255567564	345	Protein AFR, putative [Ricinus communis]	1.0	0.918	0.802	1e-162
224062428	345	f-box family protein [Populus trichocarp	1.0	0.918	0.797	1e-161
359479633	345	PREDICTED: F-box/kelch-repeat protein SK	1.0	0.918	0.776	1e-155
356536139	344	PREDICTED: F-box/kelch-repeat protein SK	0.996	0.918	0.765	1e-153
255645989	344	unknown [Glycine max]	0.996	0.918	0.762	1e-152
356500182	344	PREDICTED: F-box/kelch-repeat protein SK	0.996	0.918	0.762	1e-152
356504941	345	PREDICTED: F-box/kelch-repeat protein SK	1.0	0.918	0.765	1e-152
356572206	345	PREDICTED: F-box/kelch-repeat protein SK	1.0	0.918	0.756	1e-151
255635285	345	unknown [Glycine max]	1.0	0.918	0.759	1e-151

>gi|224085497|ref|XP_002307595.1| f-box family protein [Populus trichocarpa] gi|118482816|gb|ABK93324.1| unknown [Populus trichocarpa] gi|222857044|gb|EEE94591.1| f-box family protein [Populus trichocarpa]

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 280/345 (81%), Positives = 304/345 (88%), Gaps = 28/345 (8%)

Query: 1   MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCV 60
           MSELIEGLPDAVA+RC+ARVPF+LHPKLELVSRSWRA +RSPELFKARQEVGS+E+LLCV
Sbjct: 1   MSELIEGLPDAVAIRCIARVPFYLHPKLELVSRSWRAVVRSPELFKARQEVGSAEDLLCV 60

Query: 61  CAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGD 120
           CAFDPENLWQLYDP RDLWITLPVLPSKIRHLAHFGVVS+AGKLFVLGGGSDAVDPLTGD
Sbjct: 61  CAFDPENLWQLYDPHRDLWITLPVLPSKIRHLAHFGVVSSAGKLFVLGGGSDAVDPLTGD 120

Query: 121 QDGSFATNEVWSYDPVTR----------------------------GFTSCRKSISQAEM 152
           QDGSFATNEVWSYDPV R                            GFTSCRKSISQAEM
Sbjct: 121 QDGSFATNEVWSYDPVLRQWAARASMLVPRAMFACGTLNGKIVVAGGFTSCRKSISQAEM 180

Query: 153 YDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ 212
           YDPEKDVW+PIPDLHRTHNS C+GVVIGGK+HVLH+GLSTVQVLD++G GWTVEDYGWLQ
Sbjct: 181 YDPEKDVWIPIPDLHRTHNSTCSGVVIGGKLHVLHRGLSTVQVLDNVGSGWTVEDYGWLQ 240

Query: 213 GPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD 272
           GPMA+VHD++Y+MSHGLI KQ    RKVV SASEFR+RIGFAM+G+GDDIYVIGGVIGPD
Sbjct: 241 GPMAVVHDALYVMSHGLIFKQEGKTRKVVVSASEFRKRIGFAMMGLGDDIYVIGGVIGPD 300

Query: 273 RWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI 317
           RWNWDI+PMSDVD+LTVG +RPTWRQ +PMTRCRGTILGCTQLRI
Sbjct: 301 RWNWDIRPMSDVDILTVGGDRPTWRQATPMTRCRGTILGCTQLRI 345

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567564|ref|XP_002524761.1| Protein AFR, putative [Ricinus communis] gi|223535945|gb|EEF37604.1| Protein AFR, putative [Ricinus communis]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/345 (80%), Positives = 301/345 (87%), Gaps = 28/345 (8%)

Query: 1   MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCV 60
           MSELIEGLPDA+A+RC+ARVPF+LHPKLELVS SWR+AIRSPELFKARQEVGS+E+LLCV
Sbjct: 1   MSELIEGLPDAIAIRCIARVPFYLHPKLELVSHSWRSAIRSPELFKARQEVGSAEDLLCV 60

Query: 61  CAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGD 120
           CAF+PENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKL+VLGGGSDAVDPLTGD
Sbjct: 61  CAFEPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLYVLGGGSDAVDPLTGD 120

Query: 121 QDGSFATNEVWSYDPVTR----------------------------GFTSCRKSISQAEM 152
           QDG+FATNEVWSYDPV R                            GFTSCRKSISQAEM
Sbjct: 121 QDGNFATNEVWSYDPVIRQWALRASMLVPRAMFACCVLKGKIVVAGGFTSCRKSISQAEM 180

Query: 153 YDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ 212
           YDPEKDVW+PIPDLHRTHNSAC+G+VIGGKVH+LHKGLS VQVLD++G GWTVEDY WLQ
Sbjct: 181 YDPEKDVWIPIPDLHRTHNSACSGIVIGGKVHILHKGLSAVQVLDNVGAGWTVEDYNWLQ 240

Query: 213 GPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD 272
           GPMA+VH ++Y+MSHGLI KQ   VRKVV SASEFRRRIGFAM G+GDDIYVIGGVIGPD
Sbjct: 241 GPMAVVHGALYVMSHGLICKQEGKVRKVVVSASEFRRRIGFAMTGLGDDIYVIGGVIGPD 300

Query: 273 RWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI 317
           RWNWDIKPMSDVD+L VG ERPTWRQ +PM+RCRGTILGC QLRI
Sbjct: 301 RWNWDIKPMSDVDILAVGGERPTWRQAAPMSRCRGTILGCAQLRI 345

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062428|ref|XP_002300832.1| f-box family protein [Populus trichocarpa] gi|222842558|gb|EEE80105.1| f-box family protein [Populus trichocarpa]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 275/345 (79%), Positives = 302/345 (87%), Gaps = 28/345 (8%)

Query: 1   MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCV 60
           MSELIEGLPDAVA+RC+ARVPF+LHPKLE+VSRSW+AA+RS ELFKARQEVGS+E+LLCV
Sbjct: 1   MSELIEGLPDAVAIRCIARVPFYLHPKLEVVSRSWQAAVRSTELFKARQEVGSAEDLLCV 60

Query: 61  CAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGD 120
           CAFDPENLWQLYDPLRDLWITLP+LPSKIRHLAHFGVV +AGKLFVLGGGSDAVDPLTGD
Sbjct: 61  CAFDPENLWQLYDPLRDLWITLPILPSKIRHLAHFGVVCSAGKLFVLGGGSDAVDPLTGD 120

Query: 121 QDGSFATNEVWSYDPVTR----------------------------GFTSCRKSISQAEM 152
           QDGSFATNEVWSYDPV R                            GFTSC+KSISQAEM
Sbjct: 121 QDGSFATNEVWSYDPVLREWAARASMLVPRAMFACCALNGKIVVAGGFTSCQKSISQAEM 180

Query: 153 YDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ 212
           YDPEKDVWVPIPDLHRTHNSAC+GVVIGGK+HVLH+GLSTVQVLD +G GWTVEDYGWLQ
Sbjct: 181 YDPEKDVWVPIPDLHRTHNSACSGVVIGGKLHVLHRGLSTVQVLDSIGSGWTVEDYGWLQ 240

Query: 213 GPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD 272
           GPMA+VHD++Y+MSHGLI+KQ    RKVV SASEFR+RIGFAM G+GD++YVIGGVIGPD
Sbjct: 241 GPMAVVHDALYVMSHGLIVKQEGKTRKVVVSASEFRKRIGFAMTGLGDEMYVIGGVIGPD 300

Query: 273 RWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI 317
           RWNWDIKP+SDVD+LTVG ERPTWRQ +PMTRCRGTI GC QLRI
Sbjct: 301 RWNWDIKPVSDVDILTVGGERPTWRQATPMTRCRGTIRGCAQLRI 345

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479633|ref|XP_003632309.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 1 [Vitis vinifera] gi|359479635|ref|XP_003632310.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 2 [Vitis vinifera] gi|359479637|ref|XP_003632311.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 3 [Vitis vinifera]

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 268/345 (77%), Positives = 295/345 (85%), Gaps = 28/345 (8%)

Query: 1   MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCV 60
           MS LIEGLPDAVALRCLA VPF+LHP+LELVSRSWR AIR PELFKARQEVGSSE+LLCV
Sbjct: 1   MSGLIEGLPDAVALRCLAWVPFYLHPRLELVSRSWRDAIRGPELFKARQEVGSSEDLLCV 60

Query: 61  CAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGD 120
           CAFDPENLWQLYDP +DLWI+LPVLPS+IRHLAHFG VSTAGKLFVLGGGSDAVDPLTGD
Sbjct: 61  CAFDPENLWQLYDPRKDLWISLPVLPSRIRHLAHFGAVSTAGKLFVLGGGSDAVDPLTGD 120

Query: 121 QDGSFATNEVWSYDPVTR----------------------------GFTSCRKSISQAEM 152
           QDGSFATNEVWSYDP+ R                            GFTSCRKSISQAE+
Sbjct: 121 QDGSFATNEVWSYDPIIRQWAPRAPMLVPRAMFACCVLDGKIVVAGGFTSCRKSISQAEI 180

Query: 153 YDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ 212
           YDPEKD WV IPDLHRTHNSAC+GVV+ GKVHVLHKGL+TVQ+LD +G GW VEDYGWLQ
Sbjct: 181 YDPEKDAWVSIPDLHRTHNSACSGVVLDGKVHVLHKGLTTVQILDKVGPGWRVEDYGWLQ 240

Query: 213 GPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD 272
           GPMAIV  ++Y+MSHG+I KQ R+V+K+V SASEFRRRIGFAM G+ D+IYVIGGVIGPD
Sbjct: 241 GPMAIVQGALYVMSHGIIFKQEREVKKMVVSASEFRRRIGFAMTGLRDEIYVIGGVIGPD 300

Query: 273 RWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI 317
           RWNWDIKP+SDVDVLT+G+ERP WRQVSPM++CRGTI GCTQLRI
Sbjct: 301 RWNWDIKPLSDVDVLTIGSERPAWRQVSPMSQCRGTIFGCTQLRI 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536139|ref|XP_003536597.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 1 [Glycine max] gi|356536141|ref|XP_003536598.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 2 [Glycine max] gi|356536143|ref|XP_003536599.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 3 [Glycine max]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/345 (76%), Positives = 296/345 (85%), Gaps = 29/345 (8%)

Query: 1   MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCV 60
           MS LIEGLPDAVA+RCLA VPF+LHPKLELVSR+WRA +R PELFKARQE+GSSE+LLCV
Sbjct: 1   MSGLIEGLPDAVAIRCLAWVPFYLHPKLELVSRAWRAVVRGPELFKARQELGSSEDLLCV 60

Query: 61  CAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGD 120
           CAF+PENLWQLYDP RDLWITLPVLPS+IRHL+HFG VSTAGKLFV+GGGSDAVDPLTGD
Sbjct: 61  CAFEPENLWQLYDPQRDLWITLPVLPSRIRHLSHFGAVSTAGKLFVIGGGSDAVDPLTGD 120

Query: 121 QDGSFATNEVWSYDPVTR----------------------------GFTSCRKSISQAEM 152
           QDG FATNEVWSYDPV R                            GFTSCRKSISQAE+
Sbjct: 121 QDGCFATNEVWSYDPVVRQWSPRAAMLVPRSMFACCVMNGKIVVAGGFTSCRKSISQAEI 180

Query: 153 YDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ 212
           YDPEKDVW+P+PDLHRTHNSAC+GVVIGGKVHVLHK +STVQVLD+ G  WTVE+YGWL 
Sbjct: 181 YDPEKDVWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAG-QWTVEEYGWLH 239

Query: 213 GPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD 272
           G MA++ D++Y++SHGLIIKQ + +RKVV SASEFRRRIGFAMIG+GD++YVIGGVIGPD
Sbjct: 240 GQMAVIRDALYVISHGLIIKQDKKMRKVVGSASEFRRRIGFAMIGLGDELYVIGGVIGPD 299

Query: 273 RWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI 317
           RWNWDIKP+SDVDVLT+ +ERPTWRQ +PMTRC GTILGCTQLRI
Sbjct: 300 RWNWDIKPLSDVDVLTLASERPTWRQAAPMTRCGGTILGCTQLRI 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645989|gb|ACU23482.1| unknown [Glycine max]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 263/345 (76%), Positives = 295/345 (85%), Gaps = 29/345 (8%)

Query: 1   MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCV 60
           MS LIEGLPDAVA+RCLA VPF+LHPKLELVSR+WRA +R PELFKARQE+GSSE+LLCV
Sbjct: 1   MSGLIEGLPDAVAIRCLAWVPFYLHPKLELVSRAWRAVVRGPELFKARQELGSSEDLLCV 60

Query: 61  CAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGD 120
           CAF+PENLWQLYDP RDLWITLPVLPS+IRHL+HFG VSTAGKLFV+GGGSDAVDPLTGD
Sbjct: 61  CAFEPENLWQLYDPQRDLWITLPVLPSRIRHLSHFGAVSTAGKLFVIGGGSDAVDPLTGD 120

Query: 121 QDGSFATNEVWSYDPVTR----------------------------GFTSCRKSISQAEM 152
           QDG FATNEVWSYDPV R                            GFTSCRKSISQAE+
Sbjct: 121 QDGCFATNEVWSYDPVVRQWSPRAAMLVPRSMFACCVMNGKIVVAGGFTSCRKSISQAEI 180

Query: 153 YDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ 212
           YDPEKDVW+P+PDLHRTHNSAC+GVVIGGKVHVLHK +STVQVLD+ G  WTVE+YGWL 
Sbjct: 181 YDPEKDVWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAG-QWTVEEYGWLH 239

Query: 213 GPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD 272
           G MA++ D++Y++SHGLIIKQ + +RKVV SASEFRRRIGFAMIG+GD++YVIGGVIGPD
Sbjct: 240 GQMAVIRDALYVISHGLIIKQDKKMRKVVGSASEFRRRIGFAMIGLGDELYVIGGVIGPD 299

Query: 273 RWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI 317
           RWNWDIKP+SDVDVLT+ +ERPTWRQ +PMTRC GTI GCTQLRI
Sbjct: 300 RWNWDIKPLSDVDVLTLASERPTWRQAAPMTRCGGTIFGCTQLRI 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500182|ref|XP_003518912.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like [Glycine max]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 263/345 (76%), Positives = 296/345 (85%), Gaps = 29/345 (8%)

Query: 1   MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCV 60
           MS LIEGLPDAVA+RCLA VPF+LHPKLELVSR+WRA +R PELFKARQE+GSSE+LLCV
Sbjct: 1   MSGLIEGLPDAVAIRCLAWVPFYLHPKLELVSRAWRAVVRGPELFKARQELGSSEDLLCV 60

Query: 61  CAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGD 120
           CAF+PENLWQLYDPLRDLWITLPVLPS+IRHL+HFG VSTAGKLFV+GGGSDAVDPLTGD
Sbjct: 61  CAFEPENLWQLYDPLRDLWITLPVLPSRIRHLSHFGAVSTAGKLFVIGGGSDAVDPLTGD 120

Query: 121 QDGSFATNEVWSYDPVTR----------------------------GFTSCRKSISQAEM 152
           QDG FATNEVWSYDPV R                            GFTSCRKSISQAEM
Sbjct: 121 QDGCFATNEVWSYDPVVRQWSPRAAMLVPRSMFACCVMNGKIVVAGGFTSCRKSISQAEM 180

Query: 153 YDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ 212
           YDPEKDVW+P+PDLHRTHNSAC+GVVIGGKVHVLHK +STVQVLD+ G  WTVE+YGWL 
Sbjct: 181 YDPEKDVWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAG-QWTVEEYGWLH 239

Query: 213 GPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD 272
           G MA++ D++Y++S+GLIIKQ + +RKVV SASEFRRRIGFAMIG+GD++YVIGGVIGPD
Sbjct: 240 GQMAVIRDALYVISYGLIIKQDKKMRKVVGSASEFRRRIGFAMIGLGDELYVIGGVIGPD 299

Query: 273 RWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI 317
           RWNWDIKP+SDVDVLT+ ++RPTWRQ +PMTRC GTILGCT LRI
Sbjct: 300 RWNWDIKPLSDVDVLTLASDRPTWRQAAPMTRCGGTILGCTLLRI 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504941|ref|XP_003521251.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like [Glycine max]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/345 (76%), Positives = 294/345 (85%), Gaps = 28/345 (8%)

Query: 1   MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCV 60
           MS LIE LPDAVA+RCLARVPF+ HP LELVSRSW+AAIRSPELFKARQEVGS+E+LLCV
Sbjct: 1   MSGLIERLPDAVAIRCLARVPFYFHPVLELVSRSWQAAIRSPELFKARQEVGSTEDLLCV 60

Query: 61  CAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGD 120
           CAFDPENLWQLYDP+RDLWITLPVLPSKIRHL++FG VSTAGKLFV+GGGSDAVDPLTGD
Sbjct: 61  CAFDPENLWQLYDPMRDLWITLPVLPSKIRHLSNFGAVSTAGKLFVIGGGSDAVDPLTGD 120

Query: 121 QDGSFATNEVWSYDPVTR----------------------------GFTSCRKSISQAEM 152
           QDG FAT+EVWSYDPV R                            GFTSCRKSISQAEM
Sbjct: 121 QDGCFATDEVWSYDPVVRQWAPRASMLVPRSMFACCVLNGKIVVAGGFTSCRKSISQAEM 180

Query: 153 YDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ 212
           YDP+KDVW+P+PDLHRTHNSAC+GVVIGGKVHVLHK LSTVQVLD+ G GWTVE+  WLQ
Sbjct: 181 YDPDKDVWIPMPDLHRTHNSACSGVVIGGKVHVLHKDLSTVQVLDNAGPGWTVEECVWLQ 240

Query: 213 GPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD 272
           G MA+V D++Y+MSHGLI KQ ++VRKVV SASEFR+RIGFAM G+GDD+YVIGG IGPD
Sbjct: 241 GQMAVVGDALYVMSHGLIFKQDKEVRKVVGSASEFRKRIGFAMTGLGDDLYVIGGFIGPD 300

Query: 273 RWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI 317
           RWNWDIKP+S+VDVLT+G+ERPTWRQ +PMTRC G ILGCT LRI
Sbjct: 301 RWNWDIKPLSEVDVLTLGSERPTWRQAAPMTRCHGPILGCTLLRI 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572206|ref|XP_003554261.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like [Glycine max]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 261/345 (75%), Positives = 295/345 (85%), Gaps = 28/345 (8%)

Query: 1   MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCV 60
           MS LIEGLPDAVA+RCLARVPF+LHP LELVSRSW+AAI SPELFKARQEVGS+E+LLCV
Sbjct: 1   MSGLIEGLPDAVAIRCLARVPFYLHPVLELVSRSWQAAICSPELFKARQEVGSTEDLLCV 60

Query: 61  CAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGD 120
           CAFDPENLWQLYDP++DLWITLPVLPSKIRHL++FG VSTAGKLFV+GGGSDAVDPLTGD
Sbjct: 61  CAFDPENLWQLYDPMQDLWITLPVLPSKIRHLSNFGAVSTAGKLFVIGGGSDAVDPLTGD 120

Query: 121 QDGSFATNEVWSYDPVTR----------------------------GFTSCRKSISQAEM 152
           QDG FAT+EVWSYDPV R                            GFTSCRKSISQ+EM
Sbjct: 121 QDGCFATDEVWSYDPVAREWASRASMLVPRSMFACCVLNGKIVVAGGFTSCRKSISQSEM 180

Query: 153 YDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ 212
           YDP+KD+W+P+PDLHRTHNSAC+GVVIGGKVHVLHK +STVQVLD+ G GWTVE+  WLQ
Sbjct: 181 YDPDKDIWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAGPGWTVEECVWLQ 240

Query: 213 GPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD 272
           G MA+V D++Y+MSHGLI KQ ++VRKVV SASEFR+RIGFAM G+GDD+YVIGG IGPD
Sbjct: 241 GQMAVVGDALYVMSHGLIFKQDKEVRKVVGSASEFRKRIGFAMTGLGDDLYVIGGFIGPD 300

Query: 273 RWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI 317
           RWNWDIKP+S+VDVLT+G+ERPTWRQ + MTRC GTILGCT LRI
Sbjct: 301 RWNWDIKPLSEVDVLTLGSERPTWRQAARMTRCHGTILGCTLLRI 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635285|gb|ACU17996.1| unknown [Glycine max]

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/345 (75%), Positives = 293/345 (84%), Gaps = 28/345 (8%)

Query: 1   MSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCV 60
           MS LIE LPDAVA+RCLARVPF+ HP LELVSRSW+AAIRSPELFKARQEVGS+E+LLCV
Sbjct: 1   MSGLIERLPDAVAIRCLARVPFYFHPVLELVSRSWQAAIRSPELFKARQEVGSTEDLLCV 60

Query: 61  CAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGD 120
           CAFDPENLWQLYDP+RDLWITLPVLPSKIRHL++FG VSTAGKLFV+GGGSDAVDPLTGD
Sbjct: 61  CAFDPENLWQLYDPMRDLWITLPVLPSKIRHLSNFGAVSTAGKLFVIGGGSDAVDPLTGD 120

Query: 121 QDGSFATNEVWSYDPVTR----------------------------GFTSCRKSISQAEM 152
           QDG FAT+EVWSYDPV R                            GFTSCRKSISQAEM
Sbjct: 121 QDGCFATDEVWSYDPVVRQWAPRASMLVPRSMFACCVLNGKIVVAGGFTSCRKSISQAEM 180

Query: 153 YDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ 212
           YDP+KDVW+P+PDLHRTHNSAC+GVVIGGKV+VLHK LSTVQVLD+ G GWTVE+  WLQ
Sbjct: 181 YDPDKDVWIPMPDLHRTHNSACSGVVIGGKVYVLHKDLSTVQVLDNAGPGWTVEECVWLQ 240

Query: 213 GPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD 272
           G MA+V D++Y+MSHGLI KQ ++ RKVV SASEFR+RIGFAM G+GDD+YVIGG IGPD
Sbjct: 241 GQMAVVGDALYVMSHGLIFKQDKEERKVVGSASEFRKRIGFAMTGLGDDLYVIGGFIGPD 300

Query: 273 RWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLRI 317
           RWNWDIKP+S+VDVLT+G+ERPTWRQ +PMTRC G ILGCT LRI
Sbjct: 301 RWNWDIKPLSEVDVLTLGSERPTWRQAAPMTRCHGPILGCTLLRI 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2077299	352	AT3G63220 "AT3G63220" [Arabido	0.574	0.517	0.675	3.1e-123
TAIR|locus:2032855	383	AT1G16250 "AT1G16250" [Arabido	0.406	0.336	0.345	1.2e-13
TAIR|locus:2143468	347	AT5G03020 "AT5G03020" [Arabido	0.318	0.291	0.383	3e-12
TAIR|locus:2008773	376	AT1G67480 "AT1G67480" [Arabido	0.328	0.276	0.357	3.9e-12
TAIR|locus:2143438	354	AT5G03000 "AT5G03000" [Arabido	0.334	0.299	0.324	6.5e-12
TAIR|locus:2035696	434	AT1G55270 "AT1G55270" [Arabido	0.356	0.260	0.347	7.8e-12
TAIR|locus:2046683	372	AFR "ATTENUATED FAR-RED RESPON	0.337	0.287	0.356	1.1e-11
TAIR|locus:2175143	393	AT5G60570 "AT5G60570" [Arabido	0.634	0.511	0.276	5.5e-10
TAIR|locus:2143418	335	AT5G02980 "AT5G02980" [Arabido	0.337	0.319	0.330	3.8e-09
TAIR|locus:2122571	392	AT4G39550 "AT4G39550" [Arabido	0.236	0.191	0.395	3.9e-09

TAIR|locus:2077299 AT3G63220 "AT3G63220" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 3.1e-123, Sum P(2) = 3.1e-123
 Identities = 123/182 (67%), Positives = 140/182 (76%)

Query:   136 VTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQV 195
             V  GFT+CRKSIS AEMYDPE DVW  IPDLH+THNSAC+G+V+ GKVHVLHKGLSTVQV
Sbjct:   171 VAGGFTTCRKSISGAEMYDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQV 230

Query:   196 LDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAX 255
             L+ + LGW V+DYGW QGPM +V D +Y+MSHGL+ KQ  D  K+VASASEF+RRIG A 
Sbjct:   231 LESVKLGWDVKDYGWPQGPMVVVEDVLYVMSHGLVFKQEGDTWKMVASASEFKRRIGMAM 290

Query:   256 XXXXXXXXXXXXXXXPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL 315
                            PDR NWDIKP+SDVD LTVG +RP WR V+PMTRCRGTILGCTQL
Sbjct:   291 TSLSDEVLIVGGVIGPDRLNWDIKPLSDVDALTVGNDRPAWRSVAPMTRCRGTILGCTQL 350

Query:   316 RI 317
              I
Sbjct:   351 TI 352

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2032855 AT1G16250 "AT1G16250" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 47/136 (34%), Positives = 64/136 (47%)

Query:     4 LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPEL--FKARQEVGSSENLLCVC 61
             +I GLPD +ALRC+A++    H  LE VSR WR  +R  +   +KAR   G S + L V 
Sbjct:     8 IIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARN--GWSGSWLFVL 65

Query:    62 AFDPENLWQLYDPLRDLWITLPVLPSKIR--HLAHFGVVSTAGKLFVLGGGSDAVDPLTG 119
                 +N W  YDP  D W  LP   +     H + F  V  +  L V+GG   A    + 
Sbjct:    66 TERSKNQWVAYDPEADRWHPLPRTRAVQDGWHHSGFACVCVSNCLLVIGG-CYAPSVSSF 124

Query:   120 DQDGSFATNEVWSYDP 135
                    T +V  +DP
Sbjct:   125 PHQKPVVTKDVMRFDP 140

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2143468 AT5G03020 "AT5G03020" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
 Identities = 41/107 (38%), Positives = 62/107 (57%)

Query:     8 LPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAF---D 64
             LPD VAL C AR+  F +P L LVS+ +R  I SPEL   R  +G  EN LCVC     +
Sbjct:    20 LPDDVALDCRARISRFHYPTLSLVSKGFRTLIASPELEATRSFIGKPENHLCVCLRLYKN 79

Query:    65 PENLWQLYDPL--RDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGG 109
             P  LW ++ P+  + L   +P  P++ ++  +  VVS   +++++GG
Sbjct:    80 PNPLWFIFSPIPKQKLKPIVPWFPNQ-QYPQYPTVVSNGSQIYIIGG 125

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008773 AT1G67480 "AT1G67480" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
 Identities = 39/109 (35%), Positives = 53/109 (48%)

Query:     4 LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAF 63
             LI GLPD VA +CLA VP    P +  V + WR  ++S E    R+  G  E  L V   
Sbjct:    39 LIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTM 98

Query:    64 DP---ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGG 109
             +    +N W++ D L     +LP +P   +    F VV   GKL V+ G
Sbjct:    99 NAGGKDNRWEVMDCLGQKLSSLPPMPGPAK--TGFKVVVVDGKLLVIAG 145

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2143438 AT5G03000 "AT5G03000" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 6.5e-12, Sum P(3) = 6.5e-12
 Identities = 36/111 (32%), Positives = 56/111 (50%)

Query:     4 LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAF 63
             +   LPD + L CLARV  F  P L LV++ +++ I SP+L   R  +G +EN L VC  
Sbjct:    39 VFSSLPDELILNCLARVSRFYRPSLSLVNKEFQSLIASPDLEATRSRIGVTENHLYVCLE 98

Query:    64 ----DPENLWQLYDPLRDLWITLPVLPS-KIRHLAHFGVVSTAGKLFVLGG 109
                 +P   W    P+       P++PS   +H      VS   +++++GG
Sbjct:    99 SNKNNPNPRWFTLAPIPKEQKVKPIIPSFPYQHPTSSTFVSIGSEIYIIGG 149

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2035696 AT1G55270 "AT1G55270" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
 Identities = 41/118 (34%), Positives = 55/118 (46%)

Query:     4 LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAF 63
             L+ GLPD +A+ CL RVP   H KL LV + W         +  R+ +G SE  + V   
Sbjct:    78 LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKR 137

Query:    64 DPENL--WQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTG 119
             D +    W  +DP+  LW  LP +P +      FG    +G    L GG D   PL G
Sbjct:   138 DRDGKISWNTFDPISQLWQPLPPVPREYSEAVGFGCAVLSGCHLYLFGGKD---PLRG 192

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2046683 AFR "ATTENUATED FAR-RED RESPONSE" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 41/115 (35%), Positives = 55/115 (47%)

Query:     4 LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAF 63
             LI GLP+ +A  CL R+P+  H     VS SW   I +P    ++Q +  S   L V AF
Sbjct:    28 LISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFAF 87

Query:    64 DPENL---WQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTA-----GKLFVLGGG 110
             +       WQ  D     W  LP +P+    ++    +S A     GKLFVLGGG
Sbjct:    88 NKSTARIQWQSLDLASGRWFVLPPMPNSFTKISSPHALSCASMPRQGKLFVLGGG 142

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009585 "red, far-red light phototransduction" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2175143 AT5G60570 "AT5G60570" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 5.5e-10, P = 5.5e-10
 Identities = 62/224 (27%), Positives = 99/224 (44%)

Query:     4 LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLL-CVCA 62
             ++ GL D VAL CLA VP   +P L  V++ +   I S  LF  R+E+G  E L+  VC 
Sbjct:    49 VLPGLIDDVALNCLAWVPRSDYPSLSCVNKKYNKLINSGHLFALRKELGIVEYLVFMVC- 107

Query:    63 FDPENLWQLYDPLRDLWITLPVLPSK--IRHLAHFGVVSTAGKLFVLGGG--SDAVDPLT 118
              DP   W ++ P++  W+ LP +P      H A    ++   +L V G      A+   +
Sbjct:   108 -DPRG-WLMFSPMKKKWMVLPKMPCDECFNH-ADKESLAVDDELLVFGRELFQFAIWKYS 164

Query:   119 GDQ------DGS------FATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDL 166
                      +G       FA+  +     V  G       ++ AE+YD     W  +P++
Sbjct:   165 LRSRCWVKCEGMHRPRCLFASGSLGGIAIVAGGTDMNGNILASAELYDSSSGRWEMLPNM 224

Query:   167 HRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW 210
             H      C+G  + GK +V+  G+S+  V    G  + +E   W
Sbjct:   225 HSPRR-LCSGFFMDGKFYVIG-GMSSPNVSVTFGEEFDLETRKW 266

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2143418 AT5G02980 "AT5G02980" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
 Identities = 37/112 (33%), Positives = 57/112 (50%)

Query:     2 SELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVC 61
             S     LP  + L CLARV  + +P L LVS+ +++ I S EL+  R  +G +E  L +C
Sbjct:    11 SRTFSSLPYDIILNCLARVSRYHYPTLSLVSKEFQSLIASRELYATRSRIGKTERFLYIC 70

Query:    62 A----FDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGG 109
                   +P+  W    P+ +    LPV P    HL    V ST  +++++GG
Sbjct:    71 LNLTKSNPKYRWFTLPPVPNEQKLLPV-PLFTYHLNSSTVSSTDSEIYIIGG 121

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122571 AT4G39550 "AT4G39550" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
 Identities = 32/81 (39%), Positives = 49/81 (60%)

Query:     8 LPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAFDPEN 67
             LPD + + CLARV    +P L LVS+S+R+ I SP+L+K R  +G +E+ L VC  + ++
Sbjct:    27 LPDDLVVSCLARVSRLYYPTLSLVSKSFRSLIASPDLYKTRSLLGRTESCLYVCLQEKDS 86

Query:    68 LWQLYDPLRDLWITLPVLPSK 88
                  DP    W TL + P++
Sbjct:    87 -----DP-NPRWFTLCLKPNR 101

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M1W7	SKI30_ARATH	No assigned EC number	0.6695	1.0	0.9005	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
pfam00646	48	pfam00646, F-box, F-box domain	0.001
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	0.001
smart00612	47	smart00612, Kelch, Kelch domain	0.002
pfam01344	46	pfam01344, Kelch_1, Kelch motif	0.002
pfam01344	46	pfam01344, Kelch_1, Kelch motif	0.002

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 5  IEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFK 46
          +  LPD + L  L+R+      +L LVS+ WR+ + S +L+K
Sbjct: 3  LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWK 44

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 8  LPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKAR 48
          LPD +    L+++      +L  VSR WR+ I S + +   
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 139 GFTSCRKSISQAEMYDPEKDVWVPIPDL--HRTHNSACT 175
           GF   +  +   E+YDPE + W P+P +   R+ +    
Sbjct: 7   GFDGGQ-RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAV 44

Length = 47

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 31/74 (41%)

Query: 93  AHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEM 152
           +  GVV   GK++V+GG            DG  + + V                    E+
Sbjct: 3   SGAGVVVLGGKIYVIGG-----------YDGGQSLSSV--------------------EV 31

Query: 153 YDPEKDVWVPIPDL 166
           YDPE + W  +P +
Sbjct: 32  YDPETNTWSKLPSM 45

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 249 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMT 303
            R G  ++ +G  IYVIGG  G        + +S V+V     E  TW ++  M 
Sbjct: 1   PRSGAGVVVLGGKIYVIGGYDGG-------QSLSSVEVYDP--ETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
PLN02193	470	nitrile-specifier protein	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.98
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.97
PLN02193	470	nitrile-specifier protein	99.97
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.97
PHA03098	534	kelch-like protein; Provisional	99.97
PLN02153	341	epithiospecifier protein	99.97
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.96
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.96
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.96
PHA02790	480	Kelch-like protein; Provisional	99.96
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.93
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.91
KOG1230	521	consensus Protein containing repeated kelch motifs	99.91
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.86
KOG1230	521	consensus Protein containing repeated kelch motifs	99.84
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.81
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.72
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.72
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.53
PF13964	50	Kelch_6: Kelch motif	99.3
PF13964	50	Kelch_6: Kelch motif	99.26
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.08
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.08
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.02
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.91
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.91
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.89
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.85
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.83
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.83
smart00612	47	Kelch Kelch domain.	98.77
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.77
smart00612	47	Kelch Kelch domain.	98.74
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	98.65
PLN02772	398	guanylate kinase	98.37
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.34
PF13854	42	Kelch_5: Kelch motif	98.17
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.15
PF13854	42	Kelch_5: Kelch motif	98.13
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.08
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.07
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	98.02
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.98
PLN02772	398	guanylate kinase	97.96
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	97.87
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.85
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.73
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.69
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.64
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.55
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.49
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.13
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.86
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.76
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.54
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.52
PF03089	337	RAG2: Recombination activating protein 2; InterPro	95.9
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.85
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	95.8
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.8
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.79
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.7
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.21
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.0
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.64
KOG2055	514	consensus WD40 repeat protein [General function pr	94.61
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.57
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	94.51
smart00284	255	OLF Olfactomedin-like domains.	94.45
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.43
PF03089	337	RAG2: Recombination activating protein 2; InterPro	94.0
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.96
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	93.93
KOG0316	307	consensus Conserved WD40 repeat-containing protein	93.81
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.48
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	93.43
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	92.99
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	92.92
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.64
KOG2055	514	consensus WD40 repeat protein [General function pr	91.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	91.83
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	91.12
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	90.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	90.87
PRK13684	334	Ycf48-like protein; Provisional	89.4
KOG0266	456	consensus WD40 repeat-containing protein [General	88.68
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.03
PRK04792	448	tolB translocation protein TolB; Provisional	86.09
PRK11028	330	6-phosphogluconolactonase; Provisional	84.97
KOG2321	703	consensus WD40 repeat protein [General function pr	84.88
PRK04792	448	tolB translocation protein TolB; Provisional	83.74
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	82.34
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	82.14
PRK13684	334	Ycf48-like protein; Provisional	81.36
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	81.34
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	81.26
PRK04922	433	tolB translocation protein TolB; Provisional	80.25
PLN00181	793	protein SPA1-RELATED; Provisional	80.24

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=6.2e-38  Score=297.67  Aligned_cols=238  Identities=25%  Similarity=0.419  Sum_probs=209.2

Q ss_pred             CcCceEEEEEeCC-----CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccc
Q 021080           53 SSENLLCVCAFDP-----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFAT  127 (317)
Q Consensus        53 ~~~~~l~v~gg~~-----~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  127 (317)
                      ...+.|+++||..     .+.+++||+.+++|..+.+||.+   |..+++++++|+||++||.+.          +....
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~---r~~~~~~~~~~~lYv~GG~~~----------~~~~l  348 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP---RCRVGVAVLNGKLYVVGGYDS----------GSDRL  348 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc---cccccEEEECCEEEEEccccC----------CCccc
Confidence            3467899999954     57899999999999999999986   999999999999999999873          22378


Q ss_pred             cceeEecccCC---------------------------CCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEEC
Q 021080          128 NEVWSYDPVTR---------------------------GFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIG  180 (317)
Q Consensus       128 ~~~~~~d~~~~---------------------------G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~  180 (317)
                      +++++||+.++                           |..+.....+++|+|||.+++|+.+++|+.+ |.++++++++
T Consensus       349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~~  427 (571)
T KOG4441|consen  349 SSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-RSGHGVAVLG  427 (571)
T ss_pred             ceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-eeeeEEEEEC
Confidence            99999999998                           4444577889999999999999999999998 9999999999


Q ss_pred             CEEEEEec------CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC-------cEEEEecCCc--eEEEe
Q 021080          181 GKVHVLHK------GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-------GLIIKQHRDV--RKVVA  242 (317)
Q Consensus       181 g~lyv~gG------~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~-------~~~~~yd~~~--W~~v~  242 (317)
                      |+||++||      .++++++|||.+++|+.+++|..   .+.+++++++||++||       ..+..||+++  |..+.
T Consensus       428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~  507 (571)
T KOG4441|consen  428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA  507 (571)
T ss_pred             CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence            99999999      45889999999999999999986   6788999999999998       3488999988  99999


Q ss_pred             ccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEee
Q 021080          243 SASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLR  316 (317)
Q Consensus       243 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~~  316 (317)
                      .|+  .+|.+.++++.+++||++||+++.       ..++.|++|||+++  +|+...++...|.. .+|+++.
T Consensus       508 ~m~--~~rs~~g~~~~~~~ly~vGG~~~~-------~~l~~ve~ydp~~d--~W~~~~~~~~~~~~-~~~~~~~  569 (571)
T KOG4441|consen  508 PMT--SPRSAVGVVVLGGKLYAVGGFDGN-------NNLNTVECYDPETD--TWTEVTEPESGRGG-AGVAVIP  569 (571)
T ss_pred             cCc--cccccccEEEECCEEEEEecccCc-------cccceeEEcCCCCC--ceeeCCCccccccC-cceEEec
Confidence            998  789999999999999999998777       47899999999999  99999995555554 5666553

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=4.3e-36  Score=286.01  Aligned_cols=222  Identities=13%  Similarity=0.189  Sum_probs=188.1

Q ss_pred             hhcCHhHHHhhcChhhHHHHHhc--CCcCceEEEEEeCC-----CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeC
Q 021080           29 ELVSRSWRAAIRSPELFKARQEV--GSSENLLCVCAFDP-----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTA  101 (317)
Q Consensus        29 ~~v~k~w~~l~~s~~~~~~~~~~--~~~~~~l~v~gg~~-----~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~  101 (317)
                      ....+.|..+.   .++.++..+  +..++.||++||..     .+.+++|||.+++|..+++||.+   |..+++++++
T Consensus       278 d~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~---R~~~~~~~~~  351 (557)
T PHA02713        278 NINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN---RCRFSLAVID  351 (557)
T ss_pred             eCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch---hhceeEEEEC
Confidence            34456788763   344444433  34588999999942     46799999999999999999986   9999999999


Q ss_pred             CEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECC
Q 021080          102 GKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG  181 (317)
Q Consensus       102 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g  181 (317)
                      ++||++||.++                               ....+++++|||.+++|+.+++||.+ |..+++++++|
T Consensus       352 g~IYviGG~~~-------------------------------~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~~~~g  399 (557)
T PHA02713        352 DTIYAIGGQNG-------------------------------TNVERTIECYTMGDDKWKMLPDMPIA-LSSYGMCVLDQ  399 (557)
T ss_pred             CEEEEECCcCC-------------------------------CCCCceEEEEECCCCeEEECCCCCcc-cccccEEEECC
Confidence            99999999753                               22357899999999999999999999 99999999999


Q ss_pred             EEEEEecC-----------------------ceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC--------
Q 021080          182 KVHVLHKG-----------------------LSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH--------  227 (317)
Q Consensus       182 ~lyv~gG~-----------------------~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~--------  227 (317)
                      +||++||.                       .+.+++|||.+++|+.+++++.   .+.+++++|+||++||        
T Consensus       400 ~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~  479 (557)
T PHA02713        400 YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVK  479 (557)
T ss_pred             EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccc
Confidence            99999992                       3579999999999999998865   6678899999999997        


Q ss_pred             cEEEEecCCc---eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccC
Q 021080          228 GLIIKQHRDV---RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM  302 (317)
Q Consensus       228 ~~~~~yd~~~---W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~  302 (317)
                      +.+..||+++   |+.+++||  .+|..+++++++|+||++||+++.          ..+++||+.++  +|+.+++.
T Consensus       480 ~~ve~Ydp~~~~~W~~~~~m~--~~r~~~~~~~~~~~iyv~Gg~~~~----------~~~e~yd~~~~--~W~~~~~~  543 (557)
T PHA02713        480 TCIFRYNTNTYNGWELITTTE--SRLSALHTILHDNTIMMLHCYESY----------MLQDTFNVYTY--EWNHICHQ  543 (557)
T ss_pred             eeEEEecCCCCCCeeEccccC--cccccceeEEECCEEEEEeeecce----------eehhhcCcccc--cccchhhh
Confidence            2468999873   99999999  689999999999999999998753          26899999999  99999874

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=6.8e-35  Score=277.78  Aligned_cols=215  Identities=11%  Similarity=0.160  Sum_probs=182.8

Q ss_pred             eEEEEEeC---CCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           57 LLCVCAFD---PENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        57 ~l~v~gg~---~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      .+++.||.   ....+++||+.+++|..+++||.+   |..+++++++++|||+||....                    
T Consensus       259 ~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~---r~~~~~a~l~~~IYviGG~~~~--------------------  315 (557)
T PHA02713        259 CLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNH---IINYASAIVDNEIIIAGGYNFN--------------------  315 (557)
T ss_pred             EEEEecCccccCCCCEEEEeCCCCeEEECCCCCcc---ccceEEEEECCEEEEEcCCCCC--------------------
Confidence            45555543   124689999999999999999986   8889999999999999997421                    


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec-----CceeEEEEeCCCCcEEeccC
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDY  208 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~  208 (317)
                                ....+++++||+.+++|..+++||.+ |..+++++++|+||++||     ..+.+++||+.+++|+.+++
T Consensus       316 ----------~~~~~~v~~Yd~~~n~W~~~~~m~~~-R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~  384 (557)
T PHA02713        316 ----------NPSLNKVYKINIENKIHVELPPMIKN-RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD  384 (557)
T ss_pred             ----------CCccceEEEEECCCCeEeeCCCCcch-hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC
Confidence                      22357899999999999999999999 999999999999999999     24679999999999999998


Q ss_pred             Ccc---CCcEEEEcCeEEEEeCc-------------------------EEEEecCCc--eEEEeccccccccccEEEEEE
Q 021080          209 GWL---QGPMAIVHDSVYLMSHG-------------------------LIIKQHRDV--RKVVASASEFRRRIGFAMIGM  258 (317)
Q Consensus       209 ~~~---~~~~~~~~~~ly~~g~~-------------------------~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~  258 (317)
                      ++.   .+++++++|+||++||.                         .+..||+++  |+.+++|+  .+|..++++++
T Consensus       385 mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~  462 (557)
T PHA02713        385 MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSH  462 (557)
T ss_pred             CCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEE
Confidence            876   56788899999999972                         378899987  99999998  67888999999


Q ss_pred             CCeEEEEeCcccCCCCceecccCcceeEeecCC-CCCceeecccCCCCCCceeeeeEee
Q 021080          259 GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA-ERPTWRQVSPMTRCRGTILGCTQLR  316 (317)
Q Consensus       259 ~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~-~~~~W~~~~~~p~~~~~~~~~~~~~  316 (317)
                      +|+||++||.++..      ...+.+++|||++ +  +|+.+++||.+|.. +++|+++
T Consensus       463 ~~~IYv~GG~~~~~------~~~~~ve~Ydp~~~~--~W~~~~~m~~~r~~-~~~~~~~  512 (557)
T PHA02713        463 KDDIYVVCDIKDEK------NVKTCIFRYNTNTYN--GWELITTTESRLSA-LHTILHD  512 (557)
T ss_pred             CCEEEEEeCCCCCC------ccceeEEEecCCCCC--CeeEccccCccccc-ceeEEEC
Confidence            99999999987432      1234689999999 9  99999999999998 6777764

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=4e-34  Score=258.63  Aligned_cols=248  Identities=16%  Similarity=0.180  Sum_probs=188.3

Q ss_pred             HhHHHhhcCh-hhHHHHHhcCC--cCceEEEEEeCC------CCceEEEeCCCCCEeecCCCCcccc-ccCCeeEEEeCC
Q 021080           33 RSWRAAIRSP-ELFKARQEVGS--SENLLCVCAFDP------ENLWQLYDPLRDLWITLPVLPSKIR-HLAHFGVVSTAG  102 (317)
Q Consensus        33 k~w~~l~~s~-~~~~~~~~~~~--~~~~l~v~gg~~------~~~~~~yd~~~~~W~~~~~~p~~~~-~r~~~~~~~~~~  102 (317)
                      .+|..+.... ..+.+|..++.  .++.|||+||..      .++++.||+.+++|..+++++..|. .+.+++++++++
T Consensus         7 ~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~   86 (341)
T PLN02153          7 GGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGT   86 (341)
T ss_pred             CeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECC
Confidence            3477764421 24555655543  488999999952      3689999999999999887754321 234788999999


Q ss_pred             EEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCC-----CccCCCceEEE
Q 021080          103 KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDL-----HRTHNSACTGV  177 (317)
Q Consensus       103 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~~r~~~~~~  177 (317)
                      +|||+||...                               ....+++++||+++++|+.+++|     |.+ |..|+++
T Consensus        87 ~iyv~GG~~~-------------------------------~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~-R~~~~~~  134 (341)
T PLN02153         87 KLYIFGGRDE-------------------------------KREFSDFYSYDTVKNEWTFLTKLDEEGGPEA-RTFHSMA  134 (341)
T ss_pred             EEEEECCCCC-------------------------------CCccCcEEEEECCCCEEEEeccCCCCCCCCC-ceeeEEE
Confidence            9999999753                               22357899999999999999887     778 9999999


Q ss_pred             EECCEEEEEecC-----------ceeEEEEeCCCCcEEeccCCc---c---CCcEEEEcCeEEEEeC-------------
Q 021080          178 VIGGKVHVLHKG-----------LSTVQVLDHMGLGWTVEDYGW---L---QGPMAIVHDSVYLMSH-------------  227 (317)
Q Consensus       178 ~~~g~lyv~gG~-----------~~~v~~yd~~~~~W~~~~~~~---~---~~~~~~~~~~ly~~g~-------------  227 (317)
                      +++++|||+||.           .+++++||+.+++|+.++.+.   .   .+.+++++++||+++|             
T Consensus       135 ~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~  214 (341)
T PLN02153        135 SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDY  214 (341)
T ss_pred             EECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccce
Confidence            999999999992           247999999999999988653   1   4567889999999875             


Q ss_pred             --cEEEEecCCc--eEEEeccc-cccccccEEEEEECCeEEEEeCcccCC--CCceecccCcceeEeecCCCCCceeecc
Q 021080          228 --GLIIKQHRDV--RKVVASAS-EFRRRIGFAMIGMGDDIYVIGGVIGPD--RWNWDIKPMSDVDVLTVGAERPTWRQVS  300 (317)
Q Consensus       228 --~~~~~yd~~~--W~~v~~~~-~~~~r~~~~~~~~~~~lyv~GG~~~~~--~~~~~~~~~~~v~~yd~~~~~~~W~~~~  300 (317)
                        +.++.||+++  |+++.... .+.+|..+++++++++|||+||.....  .+.......+++++||++++  +|+.+.
T Consensus       215 ~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~--~W~~~~  292 (341)
T PLN02153        215 ESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL--VWEKLG  292 (341)
T ss_pred             ecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc--EEEecc
Confidence              3588999887  99997532 126788899999999999999974321  00001134679999999999  999885


Q ss_pred             -----cCCCCCCceeeeeEe
Q 021080          301 -----PMTRCRGTILGCTQL  315 (317)
Q Consensus       301 -----~~p~~~~~~~~~~~~  315 (317)
                           ++|..+.. ++++.|
T Consensus       293 ~~~~~~~pr~~~~-~~~~~v  311 (341)
T PLN02153        293 ECGEPAMPRGWTA-YTTATV  311 (341)
T ss_pred             CCCCCCCCCcccc-cccccc
Confidence                 67777775 455554

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=6e-33  Score=260.80  Aligned_cols=196  Identities=15%  Similarity=0.196  Sum_probs=170.5

Q ss_pred             cCceEEEEEeCC----CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccc
Q 021080           54 SENLLCVCAFDP----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE  129 (317)
Q Consensus        54 ~~~~l~v~gg~~----~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~  129 (317)
                      .++.||++||..    .+.+++|||.+++|..+++|+.+   |..+++++++++||++||...                 
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~---r~~~~~v~~~~~iYviGG~~~-----------------  329 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP---RLYASGVPANNKLYVVGGLPN-----------------  329 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch---hhcceEEEECCEEEEECCcCC-----------------
Confidence            478899999842    46899999999999999999986   888999999999999999632                 


Q ss_pred             eeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec---CceeEEEEeCCCCcEEec
Q 021080          130 VWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK---GLSTVQVLDHMGLGWTVE  206 (317)
Q Consensus       130 ~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG---~~~~v~~yd~~~~~W~~~  206 (317)
                                       .+++++||+.+++|..+++||.+ |..+++++++|+||++||   ..+.+++|||.+++|+.+
T Consensus       330 -----------------~~sve~ydp~~n~W~~~~~l~~~-r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~  391 (480)
T PHA02790        330 -----------------PTSVERWFHGDAAWVNMPSLLKP-RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG  391 (480)
T ss_pred             -----------------CCceEEEECCCCeEEECCCCCCC-CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC
Confidence                             25689999999999999999999 999999999999999999   336799999999999999


Q ss_pred             cCCcc---CCcEEEEcCeEEEEeCcEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccC
Q 021080          207 DYGWL---QGPMAIVHDSVYLMSHGLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPM  281 (317)
Q Consensus       207 ~~~~~---~~~~~~~~~~ly~~g~~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~  281 (317)
                      ++++.   .+.+++++|+||++||. +..||+++  |+.+++|+  .+|.++++++++|+||++||.+..       ...
T Consensus       392 ~~m~~~r~~~~~~~~~~~IYv~GG~-~e~ydp~~~~W~~~~~m~--~~r~~~~~~v~~~~IYviGG~~~~-------~~~  461 (480)
T PHA02790        392 PSTYYPHYKSCALVFGRRLFLVGRN-AEFYCESSNTWTLIDDPI--YPRDNPELIIVDNKLLLIGGFYRG-------SYI  461 (480)
T ss_pred             CCCCCccccceEEEECCEEEEECCc-eEEecCCCCcEeEcCCCC--CCccccEEEEECCEEEEECCcCCC-------ccc
Confidence            88764   55677899999999984 55677766  99999998  688999999999999999998643       245


Q ss_pred             cceeEeecCCCCCceeec
Q 021080          282 SDVDVLTVGAERPTWRQV  299 (317)
Q Consensus       282 ~~v~~yd~~~~~~~W~~~  299 (317)
                      +.+++||++++  +|+..
T Consensus       462 ~~ve~Yd~~~~--~W~~~  477 (480)
T PHA02790        462 DTIEVYNNRTY--SWNIW  477 (480)
T ss_pred             ceEEEEECCCC--eEEec
Confidence            78999999999  99764

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=2.2e-32  Score=247.91  Aligned_cols=232  Identities=13%  Similarity=0.133  Sum_probs=175.5

Q ss_pred             CcCceEEEEEeCCCCceEEEeC--CCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccce
Q 021080           53 SSENLLCVCAFDPENLWQLYDP--LRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV  130 (317)
Q Consensus        53 ~~~~~l~v~gg~~~~~~~~yd~--~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~  130 (317)
                      ..++.|||+||...++++.||+  .+++|.++++||..  +|..+++++++++|||+||......               
T Consensus        15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~--~R~~~~~~~~~~~iYv~GG~~~~~~---------------   77 (346)
T TIGR03547        15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGG--PRNQAVAAAIDGKLYVFGGIGKANS---------------   77 (346)
T ss_pred             EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCC--CcccceEEEECCEEEEEeCCCCCCC---------------
Confidence            3588999999977788999996  67899999999842  3899999999999999999753100               


Q ss_pred             eEecccCCCCCCCcCCCceeEEeeCCCCceeeCC-CCCccCCCceEEE-EECCEEEEEecC-------------------
Q 021080          131 WSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIP-DLHRTHNSACTGV-VIGGKVHVLHKG-------------------  189 (317)
Q Consensus       131 ~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~-~~p~~~r~~~~~~-~~~g~lyv~gG~-------------------  189 (317)
                                ......++++++||+.+++|+.++ ++|.+ +..++++ +++++||++||.                   
T Consensus        78 ----------~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~-~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~  146 (346)
T TIGR03547        78 ----------EGSPQVFDDVYRYDPKKNSWQKLDTRSPVG-LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDS  146 (346)
T ss_pred             ----------CCcceecccEEEEECCCCEEecCCCCCCCc-ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccc
Confidence                      000124678999999999999997 56777 7777666 799999999992                   


Q ss_pred             --------------------ceeEEEEeCCCCcEEeccCCcc----CCcEEEEcCeEEEEeCc--------EEEEe--cC
Q 021080          190 --------------------LSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSHG--------LIIKQ--HR  235 (317)
Q Consensus       190 --------------------~~~v~~yd~~~~~W~~~~~~~~----~~~~~~~~~~ly~~g~~--------~~~~y--d~  235 (317)
                                          .+.+++||+.+++|+.+++++.    .+.+++++++||++||.        .++.|  ++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~  226 (346)
T TIGR03547       147 EPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTG  226 (346)
T ss_pred             hhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecC
Confidence                                1679999999999999988763    45567789999999982        24444  45


Q ss_pred             Cc--eEEEecccccc-----ccccEEEEEECCeEEEEeCcccCCCC------ce--e--cccCcceeEeecCCCCCceee
Q 021080          236 DV--RKVVASASEFR-----RRIGFAMIGMGDDIYVIGGVIGPDRW------NW--D--IKPMSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       236 ~~--W~~v~~~~~~~-----~r~~~~~~~~~~~lyv~GG~~~~~~~------~~--~--~~~~~~v~~yd~~~~~~~W~~  298 (317)
                      ++  |++++.||.+.     .+.++.+++++++||++||.+..+..      ..  +  ......+++||++++  +|+.
T Consensus       227 ~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~--~W~~  304 (346)
T TIGR03547       227 GKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG--KWSK  304 (346)
T ss_pred             CCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC--cccc
Confidence            53  99999998431     12355577899999999998643210      00  0  011246899999999  9999


Q ss_pred             cccCCCCCCceeeeeEe
Q 021080          299 VSPMTRCRGTILGCTQL  315 (317)
Q Consensus       299 ~~~~p~~~~~~~~~~~~  315 (317)
                      +++||.+|.. ++++++
T Consensus       305 ~~~lp~~~~~-~~~~~~  320 (346)
T TIGR03547       305 VGKLPQGLAY-GVSVSW  320 (346)
T ss_pred             cCCCCCCcee-eEEEEc
Confidence            9999999986 455544

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=2.1e-32  Score=261.77  Aligned_cols=210  Identities=18%  Similarity=0.235  Sum_probs=182.9

Q ss_pred             CcCceEEEEEeCC-----CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccc
Q 021080           53 SSENLLCVCAFDP-----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFAT  127 (317)
Q Consensus        53 ~~~~~l~v~gg~~-----~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  127 (317)
                      ..++.+|++||..     .++++.||+.+++|..+++||.+   |..+++++++++||++||...               
T Consensus       292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---R~~~~~~~~~~~lyv~GG~~~---------------  353 (534)
T PHA03098        292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP---RKNPGVTVFNNRIYVIGGIYN---------------  353 (534)
T ss_pred             EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc---cccceEEEECCEEEEEeCCCC---------------
Confidence            3588999999842     45899999999999999999975   999999999999999999752               


Q ss_pred             cceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec------CceeEEEEeCCCC
Q 021080          128 NEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK------GLSTVQVLDHMGL  201 (317)
Q Consensus       128 ~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG------~~~~v~~yd~~~~  201 (317)
                                      ....+++++||+.+++|+.+++||.+ |..+++++++|+||++||      ..+.+++||+.++
T Consensus       354 ----------------~~~~~~v~~yd~~~~~W~~~~~lp~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~  416 (534)
T PHA03098        354 ----------------SISLNTVESWKPGESKWREEPPLIFP-RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN  416 (534)
T ss_pred             ----------------CEecceEEEEcCCCCceeeCCCcCcC-CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence                            22467899999999999999999999 999999999999999999      2368999999999


Q ss_pred             cEEeccCCcc---CCcEEEEcCeEEEEeCc----------EEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEe
Q 021080          202 GWTVEDYGWL---QGPMAIVHDSVYLMSHG----------LIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIG  266 (317)
Q Consensus       202 ~W~~~~~~~~---~~~~~~~~~~ly~~g~~----------~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~G  266 (317)
                      +|+.+++++.   .+.+++.+++||++||.          .++.||+++  |+.++.++  .+|.+++++.++++||++|
T Consensus       417 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~r~~~~~~~~~~~iyv~G  494 (534)
T PHA03098        417 KWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN--FPRINASLCIFNNKIYVVG  494 (534)
T ss_pred             eeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC--cccccceEEEECCEEEEEc
Confidence            9999987765   56677889999999982          389999887  99999888  5788888899999999999


Q ss_pred             CcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCc
Q 021080          267 GVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGT  308 (317)
Q Consensus       267 G~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~  308 (317)
                      |.....       ..+++++||++++  +|+.++++|.....
T Consensus       495 G~~~~~-------~~~~v~~yd~~~~--~W~~~~~~p~~~~~  527 (534)
T PHA03098        495 GDKYEY-------YINEIEVYDDKTN--TWTLFCKFPKVIGS  527 (534)
T ss_pred             CCcCCc-------ccceeEEEeCCCC--EEEecCCCcccccc
Confidence            987552       4678999999999  99999988887665

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=3e-32  Score=255.48  Aligned_cols=242  Identities=16%  Similarity=0.174  Sum_probs=189.2

Q ss_pred             HhHHHhhcChhhHHHHHhcCC--cCceEEEEEeCC------CCceEEEeCCCCCEeecCCCCcccc-ccCCeeEEEeCCE
Q 021080           33 RSWRAAIRSPELFKARQEVGS--SENLLCVCAFDP------ENLWQLYDPLRDLWITLPVLPSKIR-HLAHFGVVSTAGK  103 (317)
Q Consensus        33 k~w~~l~~s~~~~~~~~~~~~--~~~~l~v~gg~~------~~~~~~yd~~~~~W~~~~~~p~~~~-~r~~~~~~~~~~~  103 (317)
                      .+|..+....+.+.+|..|+.  .++.|||+||..      .+++++||+.+++|..++.+...|. .|.++++++++++
T Consensus       151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~  230 (470)
T PLN02193        151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST  230 (470)
T ss_pred             ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE
Confidence            578877554445566666654  488999999952      2579999999999998765432221 3578899999999


Q ss_pred             EEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCC---CccCCCceEEEEEC
Q 021080          104 LFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDL---HRTHNSACTGVVIG  180 (317)
Q Consensus       104 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~~r~~~~~~~~~  180 (317)
                      |||+||...                               ....+++++||+.+++|+.++++   |.+ |..|++++++
T Consensus       231 lYvfGG~~~-------------------------------~~~~ndv~~yD~~t~~W~~l~~~~~~P~~-R~~h~~~~~~  278 (470)
T PLN02193        231 LYVFGGRDA-------------------------------SRQYNGFYSFDTTTNEWKLLTPVEEGPTP-RSFHSMAADE  278 (470)
T ss_pred             EEEECCCCC-------------------------------CCCCccEEEEECCCCEEEEcCcCCCCCCC-ccceEEEEEC
Confidence            999999753                               22467899999999999999888   788 9999999999


Q ss_pred             CEEEEEec-----CceeEEEEeCCCCcEEeccCC---cc---CCcEEEEcCeEEEEeC------cEEEEecCCc--eEEE
Q 021080          181 GKVHVLHK-----GLSTVQVLDHMGLGWTVEDYG---WL---QGPMAIVHDSVYLMSH------GLIIKQHRDV--RKVV  241 (317)
Q Consensus       181 g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~~---~~---~~~~~~~~~~ly~~g~------~~~~~yd~~~--W~~v  241 (317)
                      ++||++||     ..+.+++||+.+++|+.++..   +.   .+.+++++++||+++|      +.++.||+++  |+++
T Consensus       279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~  358 (470)
T PLN02193        279 ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQV  358 (470)
T ss_pred             CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEe
Confidence            99999999     356799999999999988642   11   4567788999999987      5799999887  9999


Q ss_pred             eccc-cccccccEEEEEECCeEEEEeCcccCCC--CceecccCcceeEeecCCCCCceeecccC------CCCCCc
Q 021080          242 ASAS-EFRRRIGFAMIGMGDDIYVIGGVIGPDR--WNWDIKPMSDVDVLTVGAERPTWRQVSPM------TRCRGT  308 (317)
Q Consensus       242 ~~~~-~~~~r~~~~~~~~~~~lyv~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~~~W~~~~~~------p~~~~~  308 (317)
                      ..+. .+.+|..+++++++++|||+||....+.  ........+++++||+.++  +|+.+..+      |.+|..
T Consensus       359 ~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~--~W~~~~~~~~~~~~P~~R~~  432 (470)
T PLN02193        359 ETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL--QWERLDKFGEEEETPSSRGW  432 (470)
T ss_pred             ccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC--EEEEcccCCCCCCCCCCCcc
Confidence            8662 2368889999999999999999864221  0001135678999999999  99998643      677765

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=7.4e-31  Score=240.02  Aligned_cols=232  Identities=14%  Similarity=0.166  Sum_probs=173.3

Q ss_pred             CcCceEEEEEeCCCCceEEEeCC--CCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccce
Q 021080           53 SSENLLCVCAFDPENLWQLYDPL--RDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV  130 (317)
Q Consensus        53 ~~~~~l~v~gg~~~~~~~~yd~~--~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~  130 (317)
                      ..++.|||+||...+.++.||..  +++|..++++|..  +|.++++++++++|||+||......            .  
T Consensus        36 ~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~--~r~~~~~v~~~~~IYV~GG~~~~~~------------~--   99 (376)
T PRK14131         36 IDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG--PREQAVAAFIDGKLYVFGGIGKTNS------------E--   99 (376)
T ss_pred             EECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC--CcccceEEEECCEEEEEcCCCCCCC------------C--
Confidence            35889999999766778999986  4789999998853  4899999999999999999753100            0  


Q ss_pred             eEecccCCCCCCCcCCCceeEEeeCCCCceeeCCC-CCccCCCceEEEE-ECCEEEEEecC-------------------
Q 021080          131 WSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPD-LHRTHNSACTGVV-IGGKVHVLHKG-------------------  189 (317)
Q Consensus       131 ~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~-~p~~~r~~~~~~~-~~g~lyv~gG~-------------------  189 (317)
                                 ......+++++||+.+++|+.+++ +|.+ +..|++++ ++++||++||.                   
T Consensus       100 -----------~~~~~~~~v~~YD~~~n~W~~~~~~~p~~-~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~  167 (376)
T PRK14131        100 -----------GSPQVFDDVYKYDPKTNSWQKLDTRSPVG-LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDK  167 (376)
T ss_pred             -----------CceeEcccEEEEeCCCCEEEeCCCCCCCc-ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccch
Confidence                       001235789999999999999985 4666 77777666 89999999992                   


Q ss_pred             --------------------ceeEEEEeCCCCcEEeccCCcc----CCcEEEEcCeEEEEeCc--------EEE--EecC
Q 021080          190 --------------------LSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSHG--------LII--KQHR  235 (317)
Q Consensus       190 --------------------~~~v~~yd~~~~~W~~~~~~~~----~~~~~~~~~~ly~~g~~--------~~~--~yd~  235 (317)
                                          .+.+++||+.+++|+.+++++.    .+++++++++||++||.        .++  .||+
T Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~  247 (376)
T PRK14131        168 TPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG  247 (376)
T ss_pred             hhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecC
Confidence                                2579999999999999987764    45667789999999982        233  4566


Q ss_pred             Cc--eEEEecccccc------ccccEEEEEECCeEEEEeCcccCCCC------c-ee---cccCcceeEeecCCCCCcee
Q 021080          236 DV--RKVVASASEFR------RRIGFAMIGMGDDIYVIGGVIGPDRW------N-WD---IKPMSDVDVLTVGAERPTWR  297 (317)
Q Consensus       236 ~~--W~~v~~~~~~~------~r~~~~~~~~~~~lyv~GG~~~~~~~------~-~~---~~~~~~v~~yd~~~~~~~W~  297 (317)
                      ++  |+++..||.+.      .+.++.+++++++||++||.......      . ..   ......+++||++++  +|+
T Consensus       248 ~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~--~W~  325 (376)
T PRK14131        248 NNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG--KWQ  325 (376)
T ss_pred             CCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC--ccc
Confidence            54  99999998421      11223356789999999997643210      0 00   001235789999999  999


Q ss_pred             ecccCCCCCCceeeeeEe
Q 021080          298 QVSPMTRCRGTILGCTQL  315 (317)
Q Consensus       298 ~~~~~p~~~~~~~~~~~~  315 (317)
                      .+++||.+|.. ++++++
T Consensus       326 ~~~~lp~~r~~-~~av~~  342 (376)
T PRK14131        326 KVGELPQGLAY-GVSVSW  342 (376)
T ss_pred             ccCcCCCCccc-eEEEEe
Confidence            99999999988 566655

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.98  E-value=1.2e-30  Score=234.30  Aligned_cols=225  Identities=12%  Similarity=0.005  Sum_probs=171.8

Q ss_pred             CcCceEEEEEeCCC--------------CceEEEe-CCC-CCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCC
Q 021080           53 SSENLLCVCAFDPE--------------NLWQLYD-PLR-DLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDP  116 (317)
Q Consensus        53 ~~~~~l~v~gg~~~--------------~~~~~yd-~~~-~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~  116 (317)
                      ..++.|||+||...              ++++.|+ +.. .+|..+++||.+   |..+++++++++||++||...    
T Consensus        11 ~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~---r~~~~~~~~~~~lyviGG~~~----   83 (323)
T TIGR03548        11 IIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYE---AAYGASVSVENGIYYIGGSNS----   83 (323)
T ss_pred             EECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCcc---ccceEEEEECCEEEEEcCCCC----
Confidence            35889999999531              3677775 332 379999999976   887888899999999999753    


Q ss_pred             CCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCce----eeCCCCCccCCCceEEEEECCEEEEEec----
Q 021080          117 LTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVW----VPIPDLHRTHNSACTGVVIGGKVHVLHK----  188 (317)
Q Consensus       117 ~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W----~~~~~~p~~~r~~~~~~~~~g~lyv~gG----  188 (317)
                                                 ....+++++||+.+++|    +.+++||.+ |..+++++++++||++||    
T Consensus        84 ---------------------------~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-~~~~~~~~~~~~iYv~GG~~~~  135 (323)
T TIGR03548        84 ---------------------------SERFSSVYRITLDESKEELICETIGNLPFT-FENGSACYKDGTLYVGGGNRNG  135 (323)
T ss_pred             ---------------------------CCCceeEEEEEEcCCceeeeeeEcCCCCcC-ccCceEEEECCEEEEEeCcCCC
Confidence                                       22357889999999987    788999999 889999999999999999    


Q ss_pred             -CceeEEEEeCCCCcEEeccCCcc----CCcEEEEcCeEEEEeC------cEEEEecCCc--eEEEecccc---cccccc
Q 021080          189 -GLSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSH------GLIIKQHRDV--RKVVASASE---FRRRIG  252 (317)
Q Consensus       189 -~~~~v~~yd~~~~~W~~~~~~~~----~~~~~~~~~~ly~~g~------~~~~~yd~~~--W~~v~~~~~---~~~r~~  252 (317)
                       ..+.+++||+.+++|+.+++++.    .+.+++++++||++||      .+++.||+++  |+.++.++.   +..+..
T Consensus       136 ~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~  215 (323)
T TIGR03548       136 KPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLG  215 (323)
T ss_pred             ccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccc
Confidence             35789999999999999987652    4455678999999998      2578999887  999987642   223333


Q ss_pred             -EEEEEECCeEEEEeCcccCCCC-------------------------ceecccCcceeEeecCCCCCceeecccCC-CC
Q 021080          253 -FAMIGMGDDIYVIGGVIGPDRW-------------------------NWDIKPMSDVDVLTVGAERPTWRQVSPMT-RC  305 (317)
Q Consensus       253 -~~~~~~~~~lyv~GG~~~~~~~-------------------------~~~~~~~~~v~~yd~~~~~~~W~~~~~~p-~~  305 (317)
                       .+++..+++||++||.+.....                         ..+....+++++||++++  +|+.++++| .+
T Consensus       216 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~  293 (323)
T TIGR03548       216 AASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG--KWKSIGNSPFFA  293 (323)
T ss_pred             eeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC--eeeEcccccccc
Confidence             3345557999999998642100                         000012467999999999  999999988 57


Q ss_pred             CCceeeeeEe
Q 021080          306 RGTILGCTQL  315 (317)
Q Consensus       306 ~~~~~~~~~~  315 (317)
                      |.. ++++++
T Consensus       294 r~~-~~~~~~  302 (323)
T TIGR03548       294 RCG-AALLLT  302 (323)
T ss_pred             cCc-hheEEE
Confidence            776 455554

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.97  E-value=6.1e-30  Score=243.16  Aligned_cols=195  Identities=26%  Similarity=0.441  Sum_probs=173.0

Q ss_pred             EeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCC---------------------------CCCC-CcCCCcee
Q 021080           99 STAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTR---------------------------GFTS-CRKSISQA  150 (317)
Q Consensus        99 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------------------G~~~-~~~~~~~~  150 (317)
                      ...+.||++||.....          ...+.+.+||+.++                           |..+ ....++++
T Consensus       282 ~~~~~l~~vGG~~~~~----------~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~v  351 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQG----------QSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSV  351 (571)
T ss_pred             CCCCeEEEECCCCCCC----------cccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceE
Confidence            5678899999987422          26788999999988                           4433 46678999


Q ss_pred             EEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec-----CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeE
Q 021080          151 EMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSV  222 (317)
Q Consensus       151 ~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~l  222 (317)
                      |+||+.+|+|..+++|+.+ |..+++++++|+||++||     ..+++|+||+.+++|+.+++|..   .+.+++++++|
T Consensus       352 e~YD~~~~~W~~~a~M~~~-R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~i  430 (571)
T KOG4441|consen  352 ERYDPRTNQWTPVAPMNTK-RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKL  430 (571)
T ss_pred             EEecCCCCceeccCCccCc-cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEE
Confidence            9999999999999999999 999999999999999999     56789999999999999998876   77888999999


Q ss_pred             EEEeC--------cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          223 YLMSH--------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       223 y~~g~--------~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      |++||        +.+..|||.+  |+.+++|+  .+|.++++++++++||++||+++.       .....|+.||++++
T Consensus       431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~-------~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGT-------SALSSVERYDPETN  501 (571)
T ss_pred             EEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECCEEEEECCccCC-------CccceEEEEcCCCC
Confidence            99998        5788999988  99999999  799999999999999999999984       35667999999999


Q ss_pred             CCceeecccCCCCCCceeeeeEee
Q 021080          293 RPTWRQVSPMTRCRGTILGCTQLR  316 (317)
Q Consensus       293 ~~~W~~~~~~p~~~~~~~~~~~~~  316 (317)
                        +|+.+++|+.+|+. .++++++
T Consensus       502 --~W~~v~~m~~~rs~-~g~~~~~  522 (571)
T KOG4441|consen  502 --QWTMVAPMTSPRSA-VGVVVLG  522 (571)
T ss_pred             --ceeEcccCcccccc-ccEEEEC
Confidence              99999999999998 6887764

>PLN02193 nitrile-specifier protein

Probab=99.97  E-value=3.1e-28  Score=228.32  Aligned_cols=222  Identities=15%  Similarity=0.154  Sum_probs=170.7

Q ss_pred             CceEEEEEeCC---CC--ceEEEeCCC----CCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcc
Q 021080           55 ENLLCVCAFDP---EN--LWQLYDPLR----DLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSF  125 (317)
Q Consensus        55 ~~~l~v~gg~~---~~--~~~~yd~~~----~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~  125 (317)
                      +..|+.|.|..   ..  .++.+|+.+    ++|..+.++...|.+|..|++++++++|||+||.....           
T Consensus       120 ~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~-----------  188 (470)
T PLN02193        120 GGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPN-----------  188 (470)
T ss_pred             CCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCC-----------
Confidence            55666666632   22  345557655    89999887543334599999999999999999974310           


Q ss_pred             cccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCC---CccCCCceEEEEECCEEEEEec-----CceeEEEEe
Q 021080          126 ATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDL---HRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLD  197 (317)
Q Consensus       126 ~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd  197 (317)
                                        ....+++++||+++++|+.++++   |...+..+++++++++||++||     ..+.+++||
T Consensus       189 ------------------~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD  250 (470)
T PLN02193        189 ------------------QPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFD  250 (470)
T ss_pred             ------------------CCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEE
Confidence                              11236799999999999988653   4321457788999999999999     357899999


Q ss_pred             CCCCcEEeccCC---cc---CCcEEEEcCeEEEEeC-------cEEEEecCCc--eEEEeccc-cccccccEEEEEECCe
Q 021080          198 HMGLGWTVEDYG---WL---QGPMAIVHDSVYLMSH-------GLIIKQHRDV--RKVVASAS-EFRRRIGFAMIGMGDD  261 (317)
Q Consensus       198 ~~~~~W~~~~~~---~~---~~~~~~~~~~ly~~g~-------~~~~~yd~~~--W~~v~~~~-~~~~r~~~~~~~~~~~  261 (317)
                      +.+++|+.++++   +.   .+.+++.+++||++||       +.++.||+++  |+.++... .+..|.++++++++++
T Consensus       251 ~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gk  330 (470)
T PLN02193        251 TTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGK  330 (470)
T ss_pred             CCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCc
Confidence            999999998765   22   5667788999999998       4688999877  99987521 1257888999999999


Q ss_pred             EEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccC---CCCCCceeeeeEee
Q 021080          262 IYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM---TRCRGTILGCTQLR  316 (317)
Q Consensus       262 lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~---p~~~~~~~~~~~~~  316 (317)
                      ||++||.+..        ..+++++||++++  +|+.++++   |.+|.. +++++++
T Consensus       331 iyviGG~~g~--------~~~dv~~yD~~t~--~W~~~~~~g~~P~~R~~-~~~~~~~  377 (470)
T PLN02193        331 VWVVYGFNGC--------EVDDVHYYDPVQD--KWTQVETFGVRPSERSV-FASAAVG  377 (470)
T ss_pred             EEEEECCCCC--------ccCceEEEECCCC--EEEEeccCCCCCCCcce-eEEEEEC
Confidence            9999997533        3579999999999  99999765   889987 6777653

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.97  E-value=4.3e-29  Score=205.75  Aligned_cols=223  Identities=14%  Similarity=0.177  Sum_probs=183.1

Q ss_pred             cCceEEEEEeC---------CCCceEEEeCCCCCEeecCC----------CCccccccCCeeEEEeCCEEEEEcCcCCCC
Q 021080           54 SENLLCVCAFD---------PENLWQLYDPLRDLWITLPV----------LPSKIRHLAHFGVVSTAGKLFVLGGGSDAV  114 (317)
Q Consensus        54 ~~~~l~v~gg~---------~~~~~~~yd~~~~~W~~~~~----------~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~  114 (317)
                      .+..+|-|||-         ...+++.+|..+-+|.++++          -|.-|.-|++|+++.+++++||.||.++..
T Consensus        22 VG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~e  101 (392)
T KOG4693|consen   22 VGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDE  101 (392)
T ss_pred             ecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcc
Confidence            48899999992         25789999999999999875          122244599999999999999999987632


Q ss_pred             CCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeC---CCCCccCCCceEEEEECCEEEEEec---
Q 021080          115 DPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI---PDLHRTHNSACTGVVIGGKVHVLHK---  188 (317)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~~r~~~~~~~~~g~lyv~gG---  188 (317)
                                                    ..-+..+.||+++++|.+.   +-.|.+ |.+|++++.++.+|++||   
T Consensus       102 ------------------------------gaCN~Ly~fDp~t~~W~~p~v~G~vPga-RDGHsAcV~gn~MyiFGGye~  150 (392)
T KOG4693|consen  102 ------------------------------GACNLLYEFDPETNVWKKPEVEGFVPGA-RDGHSACVWGNQMYIFGGYEE  150 (392)
T ss_pred             ------------------------------cccceeeeeccccccccccceeeecCCc-cCCceeeEECcEEEEecChHH
Confidence                                          2347788899999999876   457888 999999999999999999   


Q ss_pred             ----CceeEEEEeCCCCcEEeccCCcc------CCcEEEEcCeEEEEeC----------------cEEEEecCCc--eEE
Q 021080          189 ----GLSTVQVLDHMGLGWTVEDYGWL------QGPMAIVHDSVYLMSH----------------GLIIKQHRDV--RKV  240 (317)
Q Consensus       189 ----~~~~v~~yd~~~~~W~~~~~~~~------~~~~~~~~~~ly~~g~----------------~~~~~yd~~~--W~~  240 (317)
                          .++++.++|+.+.+|+.+...-.      .++++++++.+|++||                ..+..+|..+  |..
T Consensus       151 ~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r  230 (392)
T KOG4693|consen  151 DAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTR  230 (392)
T ss_pred             HHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEecccccccc
Confidence                56889999999999998864321      6888899999999998                3677888777  988


Q ss_pred             Eecccc-ccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeeccc---CCCCCCceeeeeEe
Q 021080          241 VASASE-FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSP---MTRCRGTILGCTQL  315 (317)
Q Consensus       241 v~~~~~-~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~---~p~~~~~~~~~~~~  315 (317)
                      -+.-+. +.+|.+|++.++++++|+|||++..-.     ...++++.|||.+.  .|+.+.+   -|.+|.. ++|+++
T Consensus       231 ~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln-----~HfndLy~FdP~t~--~W~~I~~~Gk~P~aRRR-qC~~v~  301 (392)
T KOG4693|consen  231 TPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN-----VHFNDLYCFDPKTS--MWSVISVRGKYPSARRR-QCSVVS  301 (392)
T ss_pred             CCCCCcCCCcccccceEEEcceEEEecccchhhh-----hhhcceeecccccc--hheeeeccCCCCCcccc-eeEEEE
Confidence            765442 468888999999999999999987643     46789999999999  9999854   5999998 455543

>PHA03098 kelch-like protein; Provisional

Probab=99.97  E-value=1.2e-28  Score=235.89  Aligned_cols=216  Identities=16%  Similarity=0.179  Sum_probs=176.3

Q ss_pred             ceEEEEEeCC--CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           56 NLLCVCAFDP--ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        56 ~~l~v~gg~~--~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      ..+++.+|..  ...+.+|++..++|..+++.|.    +..+++++++++||++||....                    
T Consensus       251 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lyv~GG~~~~--------------------  306 (534)
T PHA03098        251 SIIYIHITMSIFTYNYITNYSPLSEINTIIDIHY----VYCFGSVVLNNVIYFIGGMNKN--------------------  306 (534)
T ss_pred             cceEeecccchhhceeeecchhhhhcccccCccc----cccceEEEECCEEEEECCCcCC--------------------
Confidence            3455544422  3456789999999999877664    4557889999999999997532                    


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec-----CceeEEEEeCCCCcEEeccC
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDY  208 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~  208 (317)
                                ....+++++||+.+++|..+++||.+ |..+++++++++||++||     ..+.+++||+.+++|+..++
T Consensus       307 ----------~~~~~~v~~yd~~~~~W~~~~~~~~~-R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~  375 (534)
T PHA03098        307 ----------NLSVNSVVSYDTKTKSWNKVPELIYP-RKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPP  375 (534)
T ss_pred             ----------CCeeccEEEEeCCCCeeeECCCCCcc-cccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCC
Confidence                      22346899999999999999999999 999999999999999999     34679999999999999987


Q ss_pred             Ccc---CCcEEEEcCeEEEEeC--------cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCc
Q 021080          209 GWL---QGPMAIVHDSVYLMSH--------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWN  275 (317)
Q Consensus       209 ~~~---~~~~~~~~~~ly~~g~--------~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~  275 (317)
                      ++.   .+.+++++|+||++||        +.++.||+++  |+.++++|  .+|.+++++.++++||++||....... 
T Consensus       376 lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~-  452 (534)
T PHA03098        376 LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--ISHYGGCAIYHDGKIYVIGGISYIDNI-  452 (534)
T ss_pred             cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--ccccCceEEEECCEEEEECCccCCCCC-
Confidence            765   5677888999999998        4689999876  99999988  678888999999999999997654311 


Q ss_pred             eecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEe
Q 021080          276 WDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL  315 (317)
Q Consensus       276 ~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~  315 (317)
                         ...+.+++||++++  +|+.++++|.+|.. ++++++
T Consensus       453 ---~~~~~v~~yd~~~~--~W~~~~~~~~~r~~-~~~~~~  486 (534)
T PHA03098        453 ---KVYNIVESYNPVTN--KWTELSSLNFPRIN-ASLCIF  486 (534)
T ss_pred             ---cccceEEEecCCCC--ceeeCCCCCccccc-ceEEEE
Confidence               13457999999999  99999999999987 455544

>PLN02153 epithiospecifier protein

Probab=99.97  E-value=2.7e-28  Score=220.55  Aligned_cols=205  Identities=17%  Similarity=0.217  Sum_probs=160.2

Q ss_pred             CCCCCEeecCC----CCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCce
Q 021080           74 PLRDLWITLPV----LPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQ  149 (317)
Q Consensus        74 ~~~~~W~~~~~----~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~  149 (317)
                      +.+++|.++..    +|.   +|..|++++++++|||+||.....                             ....++
T Consensus         4 ~~~~~W~~~~~~~~~~P~---pR~~h~~~~~~~~iyv~GG~~~~~-----------------------------~~~~~~   51 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPG---PRCSHGIAVVGDKLYSFGGELKPN-----------------------------EHIDKD   51 (341)
T ss_pred             ccCCeEEEecCCCCCCCC---CCCcceEEEECCEEEEECCccCCC-----------------------------CceeCc
Confidence            46788999976    454   499999999999999999974310                             123478


Q ss_pred             eEEeeCCCCceeeCCCCC-cc--CCCceEEEEECCEEEEEec-----CceeEEEEeCCCCcEEeccCC-----cc---CC
Q 021080          150 AEMYDPEKDVWVPIPDLH-RT--HNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDYG-----WL---QG  213 (317)
Q Consensus       150 ~~~yd~~t~~W~~~~~~p-~~--~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~~-----~~---~~  213 (317)
                      +++||+.+++|+.+++++ .+  .+..+++++++++||++||     ..+.+++||+.+++|+.++++     +.   .+
T Consensus        52 ~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~  131 (341)
T PLN02153         52 LYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFH  131 (341)
T ss_pred             EEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceee
Confidence            999999999999998764 34  1236788999999999999     346899999999999988764     22   56


Q ss_pred             cEEEEcCeEEEEeCc-------------EEEEecCCc--eEEEecccc-ccccccEEEEEECCeEEEEeCcccC---CCC
Q 021080          214 PMAIVHDSVYLMSHG-------------LIIKQHRDV--RKVVASASE-FRRRIGFAMIGMGDDIYVIGGVIGP---DRW  274 (317)
Q Consensus       214 ~~~~~~~~ly~~g~~-------------~~~~yd~~~--W~~v~~~~~-~~~r~~~~~~~~~~~lyv~GG~~~~---~~~  274 (317)
                      .+++.+++||++||.             .++.||+++  |+.++.+.. +..|.++++++++++||++||....   ++.
T Consensus       132 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~  211 (341)
T PLN02153        132 SMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGK  211 (341)
T ss_pred             EEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCc
Confidence            778889999999981             478899887  999987642 3578888999999999999997532   110


Q ss_pred             ceecccCcceeEeecCCCCCceeeccc---CCCCCCceeeeeEe
Q 021080          275 NWDIKPMSDVDVLTVGAERPTWRQVSP---MTRCRGTILGCTQL  315 (317)
Q Consensus       275 ~~~~~~~~~v~~yd~~~~~~~W~~~~~---~p~~~~~~~~~~~~  315 (317)
                      .  ....+++++||++++  +|+.+.+   +|.+|.. ++++++
T Consensus       212 ~--~~~~~~v~~yd~~~~--~W~~~~~~g~~P~~r~~-~~~~~~  250 (341)
T PLN02153        212 S--DYESNAVQFFDPASG--KWTEVETTGAKPSARSV-FAHAVV  250 (341)
T ss_pred             c--ceecCceEEEEcCCC--cEEeccccCCCCCCcce-eeeEEE
Confidence            0  013578999999999  9999864   6889987 677765

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.96  E-value=1.3e-28  Score=221.00  Aligned_cols=200  Identities=17%  Similarity=0.164  Sum_probs=159.8

Q ss_pred             hHHHhhcChhhHHHHHhcC--CcCceEEEEEeCC----CCceEEEeCCCCCE----eecCCCCccccccCCeeEEEeCCE
Q 021080           34 SWRAAIRSPELFKARQEVG--SSENLLCVCAFDP----ENLWQLYDPLRDLW----ITLPVLPSKIRHLAHFGVVSTAGK  103 (317)
Q Consensus        34 ~w~~l~~s~~~~~~~~~~~--~~~~~l~v~gg~~----~~~~~~yd~~~~~W----~~~~~~p~~~~~r~~~~~~~~~~~  103 (317)
                      .|..+   ++++.+|..++  ..++.||++||..    .+++++||+.+++|    ..++++|.+   |..+++++++++
T Consensus        52 ~W~~~---~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~---~~~~~~~~~~~~  125 (323)
T TIGR03548        52 KWVKD---GQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT---FENGSACYKDGT  125 (323)
T ss_pred             eEEEc---ccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC---ccCceEEEECCE
Confidence            57766   34444554332  3488999999942    57899999999988    778888875   888999999999


Q ss_pred             EEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCc-cCCCceEEEEECCE
Q 021080          104 LFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHR-THNSACTGVVIGGK  182 (317)
Q Consensus       104 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~~r~~~~~~~~~g~  182 (317)
                      |||+||...                               ....+++++||+.+++|+.+++||. + |..+++++++++
T Consensus       126 iYv~GG~~~-------------------------------~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~  173 (323)
T TIGR03548       126 LYVGGGNRN-------------------------------GKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNE  173 (323)
T ss_pred             EEEEeCcCC-------------------------------CccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCE
Confidence            999999642                               2235789999999999999999985 6 888888899999


Q ss_pred             EEEEecC----ceeEEEEeCCCCcEEeccCCcc--------CCc-EEEEcCeEEEEeCc---------------------
Q 021080          183 VHVLHKG----LSTVQVLDHMGLGWTVEDYGWL--------QGP-MAIVHDSVYLMSHG---------------------  228 (317)
Q Consensus       183 lyv~gG~----~~~v~~yd~~~~~W~~~~~~~~--------~~~-~~~~~~~ly~~g~~---------------------  228 (317)
                      ||++||.    ..++++||+.+++|+.++++..        .+. ++..+++||++||.                     
T Consensus       174 iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~  253 (323)
T TIGR03548       174 LYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLK  253 (323)
T ss_pred             EEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhh
Confidence            9999992    2468999999999999987531        122 23347899999982                     


Q ss_pred             ------------------EEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCC
Q 021080          229 ------------------LIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD  272 (317)
Q Consensus       229 ------------------~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~  272 (317)
                                        .++.||+++  |+.++.+|. ..|..+++++++++||++||....+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iyv~GG~~~pg  316 (323)
T TIGR03548       254 GYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF-FARCGAALLLTGNNIFSINGELKPG  316 (323)
T ss_pred             hhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc-cccCchheEEECCEEEEEeccccCC
Confidence                              488999886  999998874 4788899999999999999987765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.96  E-value=1.5e-28  Score=224.89  Aligned_cols=243  Identities=17%  Similarity=0.159  Sum_probs=169.4

Q ss_pred             CHhHHHhhcChhhHHHHHhc--CCcCceEEEEEeCC----------CCceEEEeCCCCCEeecCCC-CccccccCCeeEE
Q 021080           32 SRSWRAAIRSPELFKARQEV--GSSENLLCVCAFDP----------ENLWQLYDPLRDLWITLPVL-PSKIRHLAHFGVV   98 (317)
Q Consensus        32 ~k~w~~l~~s~~~~~~~~~~--~~~~~~l~v~gg~~----------~~~~~~yd~~~~~W~~~~~~-p~~~~~r~~~~~~   98 (317)
                      .++|..+..-|..  +|..+  ...++.|||+||..          .+++++||+.+++|..++++ |.   .+.+++++
T Consensus        61 ~~~W~~l~~~p~~--~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~---~~~~~~~~  135 (376)
T PRK14131         61 SKGWTKIAAFPGG--PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPV---GLAGHVAV  135 (376)
T ss_pred             CCCeEECCcCCCC--CcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCC---cccceEEE
Confidence            4689877433322  23333  34588999999943          36799999999999999753 43   36667766


Q ss_pred             E-eCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe-----------cccCCCCCCCcCCCceeEEeeCCCCceeeCCCC
Q 021080           99 S-TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY-----------DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDL  166 (317)
Q Consensus        99 ~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~-----------d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~  166 (317)
                      + .+++|||+||.....      +.+  ...++...           +.............+++++||+.+++|+.+++|
T Consensus       136 ~~~~~~IYv~GG~~~~~------~~~--~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~  207 (376)
T PRK14131        136 SLHNGKAYITGGVNKNI------FDG--YFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES  207 (376)
T ss_pred             EeeCCEEEEECCCCHHH------HHH--HHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC
Confidence            6 899999999975310      000  00000000           000000000011247899999999999999999


Q ss_pred             Cc-cCCCceEEEEECCEEEEEecC------ceeE--EEEeCCCCcEEeccCCccC-----------CcEEEEcCeEEEEe
Q 021080          167 HR-THNSACTGVVIGGKVHVLHKG------LSTV--QVLDHMGLGWTVEDYGWLQ-----------GPMAIVHDSVYLMS  226 (317)
Q Consensus       167 p~-~~r~~~~~~~~~g~lyv~gG~------~~~v--~~yd~~~~~W~~~~~~~~~-----------~~~~~~~~~ly~~g  226 (317)
                      |. + +..++++.++++||++||.      ...+  ..||+.+++|+.+++++.+           +.+++++++||++|
T Consensus       208 p~~~-~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~G  286 (376)
T PRK14131        208 PFLG-TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAG  286 (376)
T ss_pred             CCCC-CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEee
Confidence            96 5 7788888999999999991      1223  3567899999999877541           11466899999999


Q ss_pred             Cc------------------------EEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceeccc
Q 021080          227 HG------------------------LIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKP  280 (317)
Q Consensus       227 ~~------------------------~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~  280 (317)
                      |.                        .+..||++.  |+.+..+|  .+|..+++++++|+|||+||....+      ..
T Consensus       287 G~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp--~~r~~~~av~~~~~iyv~GG~~~~~------~~  358 (376)
T PRK14131        287 GANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP--QGLAYGVSVSWNNGVLLIGGETAGG------KA  358 (376)
T ss_pred             ccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC--CCccceEEEEeCCEEEEEcCCCCCC------cE
Confidence            72                        134688765  99999998  6788888999999999999976543      46


Q ss_pred             CcceeEeecCCCCCceee
Q 021080          281 MSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       281 ~~~v~~yd~~~~~~~W~~  298 (317)
                      .++|++|+++++  ++..
T Consensus       359 ~~~v~~~~~~~~--~~~~  374 (376)
T PRK14131        359 VSDVTLLSWDGK--KLTV  374 (376)
T ss_pred             eeeEEEEEEcCC--EEEE
Confidence            789999999988  7754

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.96  E-value=3.6e-28  Score=220.33  Aligned_cols=235  Identities=16%  Similarity=0.123  Sum_probs=164.5

Q ss_pred             cCHhHHHhhcChhhH-HHHHhcC--CcCceEEEEEeCC----------CCceEEEeCCCCCEeecC-CCCccccccCCee
Q 021080           31 VSRSWRAAIRSPELF-KARQEVG--SSENLLCVCAFDP----------ENLWQLYDPLRDLWITLP-VLPSKIRHLAHFG   96 (317)
Q Consensus        31 v~k~w~~l~~s~~~~-~~~~~~~--~~~~~l~v~gg~~----------~~~~~~yd~~~~~W~~~~-~~p~~~~~r~~~~   96 (317)
                      ..++|+.+.   +++ .+|..++  ..++.|||+||..          .+++++||+.+++|..++ ++|..   +.+++
T Consensus        39 ~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~---~~~~~  112 (346)
T TIGR03547        39 PSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG---LLGAS  112 (346)
T ss_pred             CCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc---cccee
Confidence            467899874   343 2344333  4588999999942          367999999999999986 34443   66666


Q ss_pred             EE-EeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCC----------CC-CCCcCCCceeEEeeCCCCceeeCC
Q 021080           97 VV-STAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTR----------GF-TSCRKSISQAEMYDPEKDVWVPIP  164 (317)
Q Consensus        97 ~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------G~-~~~~~~~~~~~~yd~~t~~W~~~~  164 (317)
                      ++ +++++||++||.+....      +  ....++..+|+...          +. .......+++++||+.+++|+.++
T Consensus       113 ~~~~~~g~IYviGG~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~  184 (346)
T TIGR03547       113 GFSLHNGQAYFTGGVNKNIF------D--GYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG  184 (346)
T ss_pred             EEEEeCCEEEEEcCcChHHH------H--HHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc
Confidence            65 78999999999753100      0  01112222222110          00 000012478999999999999999


Q ss_pred             CCCc-cCCCceEEEEECCEEEEEecC------ceeEEEEe--CCCCcEEeccCCccC----------CcEEEEcCeEEEE
Q 021080          165 DLHR-THNSACTGVVIGGKVHVLHKG------LSTVQVLD--HMGLGWTVEDYGWLQ----------GPMAIVHDSVYLM  225 (317)
Q Consensus       165 ~~p~-~~r~~~~~~~~~g~lyv~gG~------~~~v~~yd--~~~~~W~~~~~~~~~----------~~~~~~~~~ly~~  225 (317)
                      +||. + |..+++++++++|||+||.      ...++.||  +.+++|+.+++++.+          +.+++++|+||++
T Consensus       185 ~~p~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~  263 (346)
T TIGR03547       185 ENPFLG-TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVA  263 (346)
T ss_pred             cCCCCc-CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEe
Confidence            9996 6 7888889999999999992      13455555  577799999987541          1156789999999


Q ss_pred             eCc------------------------EEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecc
Q 021080          226 SHG------------------------LIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIK  279 (317)
Q Consensus       226 g~~------------------------~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~  279 (317)
                      ||.                        .+..||++.  |+.+..+|  .+|..+++++++|+|||+||....+      .
T Consensus       264 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp--~~~~~~~~~~~~~~iyv~GG~~~~~------~  335 (346)
T TIGR03547       264 GGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLP--QGLAYGVSVSWNNGVLLIGGENSGG------K  335 (346)
T ss_pred             ecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCC--CCceeeEEEEcCCEEEEEeccCCCC------C
Confidence            982                        345677665  99999998  5678888889999999999987664      3


Q ss_pred             cCcceeEee
Q 021080          280 PMSDVDVLT  288 (317)
Q Consensus       280 ~~~~v~~yd  288 (317)
                      ..++|+.|.
T Consensus       336 ~~~~v~~~~  344 (346)
T TIGR03547       336 AVTDVYLLS  344 (346)
T ss_pred             EeeeEEEEE
Confidence            566777654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA02790 Kelch-like protein; Provisional

Probab=99.96  E-value=1.5e-27  Score=224.26  Aligned_cols=168  Identities=13%  Similarity=0.210  Sum_probs=146.4

Q ss_pred             EEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEE
Q 021080           97 VVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTG  176 (317)
Q Consensus        97 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~  176 (317)
                      ++..++.||++||.+.                               ....+++++||+.+++|..+++|+.+ |..+++
T Consensus       267 ~~~~~~~lyviGG~~~-------------------------------~~~~~~v~~Ydp~~~~W~~~~~m~~~-r~~~~~  314 (480)
T PHA02790        267 STHVGEVVYLIGGWMN-------------------------------NEIHNNAIAVNYISNNWIPIPPMNSP-RLYASG  314 (480)
T ss_pred             eEEECCEEEEEcCCCC-------------------------------CCcCCeEEEEECCCCEEEECCCCCch-hhcceE
Confidence            4568999999999743                               22457899999999999999999999 988899


Q ss_pred             EEECCEEEEEec--CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC-----cEEEEecCCc--eEEEecc
Q 021080          177 VVIGGKVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-----GLIIKQHRDV--RKVVASA  244 (317)
Q Consensus       177 ~~~~g~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~-----~~~~~yd~~~--W~~v~~~  244 (317)
                      ++++|+||++||  ....+++||+.+++|+.+++++.   .+.+++++|+||++||     +.+..||+++  |+.+++|
T Consensus       315 v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m  394 (480)
T PHA02790        315 VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST  394 (480)
T ss_pred             EEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence            999999999999  34679999999999999998875   5677889999999998     3577899877  9999999


Q ss_pred             ccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEee
Q 021080          245 SEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLR  316 (317)
Q Consensus       245 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~~  316 (317)
                      +  .+|..+++++++|+||++||               .+++||++++  +|+.+++||.+|.. +++|+++
T Consensus       395 ~--~~r~~~~~~~~~~~IYv~GG---------------~~e~ydp~~~--~W~~~~~m~~~r~~-~~~~v~~  446 (480)
T PHA02790        395 Y--YPHYKSCALVFGRRLFLVGR---------------NAEFYCESSN--TWTLIDDPIYPRDN-PELIIVD  446 (480)
T ss_pred             C--CccccceEEEECCEEEEECC---------------ceEEecCCCC--cEeEcCCCCCCccc-cEEEEEC
Confidence            8  68888899999999999998               2468999999  99999999999998 5777664

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.93  E-value=4.1e-25  Score=182.33  Aligned_cols=196  Identities=15%  Similarity=0.171  Sum_probs=156.7

Q ss_pred             HHHHHhcCC--cCceEEEEEeCC-----CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCC
Q 021080           45 FKARQEVGS--SENLLCVCAFDP-----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPL  117 (317)
Q Consensus        45 ~~~~~~~~~--~~~~l~v~gg~~-----~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~  117 (317)
                      +..|..|..  -++.+|+-||-.     -+-+++|||++++|.+...-..-|.+|.+|+++++++.+|||||+.+..   
T Consensus        76 PyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a---  152 (392)
T KOG4693|consen   76 PYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDA---  152 (392)
T ss_pred             chhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHH---
Confidence            334444433  278999999832     4678999999999987643222234599999999999999999986532   


Q ss_pred             CCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeC---CCCCccCCCceEEEEECCEEEEEec------
Q 021080          118 TGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI---PDLHRTHNSACTGVVIGGKVHVLHK------  188 (317)
Q Consensus       118 ~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~~r~~~~~~~~~g~lyv~gG------  188 (317)
                                                .+-.++++++|..|-+|+.+   ...|.- |..|+++++++.+|++||      
T Consensus       153 --------------------------~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw-RDFH~a~~~~~~MYiFGGR~D~~g  205 (392)
T KOG4693|consen  153 --------------------------QRFSQDTHVLDFATMTWREMHTKGDPPRW-RDFHTASVIDGMMYIFGGRSDESG  205 (392)
T ss_pred             --------------------------HhhhccceeEeccceeeeehhccCCCchh-hhhhhhhhccceEEEeccccccCC
Confidence                                      33457899999999999988   466777 999999999999999999      


Q ss_pred             --------CceeEEEEeCCCCcEEeccCCcc------CCcEEEEcCeEEEEeC---------cEEEEecCCc--eEEEec
Q 021080          189 --------GLSTVQVLDHMGLGWTVEDYGWL------QGPMAIVHDSVYLMSH---------GLIIKQHRDV--RKVVAS  243 (317)
Q Consensus       189 --------~~~~v~~yd~~~~~W~~~~~~~~------~~~~~~~~~~ly~~g~---------~~~~~yd~~~--W~~v~~  243 (317)
                              ..+.+..+|+.++.|..-++...      .+++-+.+++||++||         +++|.||+.+  |..+..
T Consensus       206 pfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~  285 (392)
T KOG4693|consen  206 PFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV  285 (392)
T ss_pred             CccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeec
Confidence                    35689999999999998765432      7888999999999998         6899999998  999874


Q ss_pred             ccc-ccccccEEEEEECCeEEEEeCccc
Q 021080          244 ASE-FRRRIGFAMIGMGDDIYVIGGVIG  270 (317)
Q Consensus       244 ~~~-~~~r~~~~~~~~~~~lyv~GG~~~  270 (317)
                      -.. +..|.....++.++|+|+|||...
T Consensus       286 ~Gk~P~aRRRqC~~v~g~kv~LFGGTsP  313 (392)
T KOG4693|consen  286 RGKYPSARRRQCSVVSGGKVYLFGGTSP  313 (392)
T ss_pred             cCCCCCcccceeEEEECCEEEEecCCCC
Confidence            321 355666678889999999999876

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.91  E-value=9.6e-23  Score=191.05  Aligned_cols=229  Identities=17%  Similarity=0.228  Sum_probs=185.3

Q ss_pred             ChhhHHHHHhcCC--cCceEEEEEeCC----CC--ceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCC
Q 021080           41 SPELFKARQEVGS--SENLLCVCAFDP----EN--LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSD  112 (317)
Q Consensus        41 s~~~~~~~~~~~~--~~~~l~v~gg~~----~~--~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~  112 (317)
                      ....+.+|..|.+  .++.+||+||..    ..  +++.+|..+..|.....-...|.+|++|++++++++||+|||...
T Consensus        54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~  133 (482)
T KOG0379|consen   54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK  133 (482)
T ss_pred             CCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC
Confidence            4556777777765  488999999943    22  599999999999887655555557999999999999999999864


Q ss_pred             CCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeC---CCCCccCCCceEEEEECCEEEEEec-
Q 021080          113 AVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI---PDLHRTHNSACTGVVIGGKVHVLHK-  188 (317)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~~r~~~~~~~~~g~lyv~gG-  188 (317)
                      .                              ....++++.||+.|++|+.+   ..+|.+ |.+|++++++.++||+|| 
T Consensus       134 ~------------------------------~~~~~~l~~~d~~t~~W~~l~~~~~~P~~-r~~Hs~~~~g~~l~vfGG~  182 (482)
T KOG0379|consen  134 K------------------------------YRNLNELHSLDLSTRTWSLLSPTGDPPPP-RAGHSATVVGTKLVVFGGI  182 (482)
T ss_pred             C------------------------------CCChhheEeccCCCCcEEEecCcCCCCCC-cccceEEEECCEEEEECCc
Confidence            1                              22368899999999999987   456888 999999999999999999 


Q ss_pred             -----CceeEEEEeCCCCcEEeccCCcc------CCcEEEEcCeEEEEeC--------cEEEEecCCc--eEEEecccc-
Q 021080          189 -----GLSTVQVLDHMGLGWTVEDYGWL------QGPMAIVHDSVYLMSH--------GLIIKQHRDV--RKVVASASE-  246 (317)
Q Consensus       189 -----~~~~v~~yd~~~~~W~~~~~~~~------~~~~~~~~~~ly~~g~--------~~~~~yd~~~--W~~v~~~~~-  246 (317)
                           ..+++++||+.+.+|.++.....      .|.++++++++++++|        ++++.+|..+  |+.+..... 
T Consensus       183 ~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~  262 (482)
T KOG0379|consen  183 GGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDL  262 (482)
T ss_pred             cCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCC
Confidence                 46899999999999998864322      6788899999999987        5789999888  886653332 


Q ss_pred             ccccccEEEEEECCeEEEEeCcccCCCCceecc-cCcceeEeecCCCCCceeecccC----CCCCCc
Q 021080          247 FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIK-PMSDVDVLTVGAERPTWRQVSPM----TRCRGT  308 (317)
Q Consensus       247 ~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~-~~~~v~~yd~~~~~~~W~~~~~~----p~~~~~  308 (317)
                      +.+|..|.++..+++++++||.....      . ...+++.||.+++  .|..+...    |.+|..
T Consensus       263 p~~R~~h~~~~~~~~~~l~gG~~~~~------~~~l~~~~~l~~~~~--~w~~~~~~~~~~~~~~~~  321 (482)
T KOG0379|consen  263 PSPRSGHSLTVSGDHLLLFGGGTDPK------QEPLGDLYGLDLETL--VWSKVESVGVVRPSPRLG  321 (482)
T ss_pred             CCCcceeeeEEECCEEEEEcCCcccc------ccccccccccccccc--ceeeeecccccccccccc
Confidence            37999999999999999999987652      2 5789999999999  99988543    455554

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.91  E-value=2.9e-23  Score=180.58  Aligned_cols=257  Identities=12%  Similarity=0.102  Sum_probs=185.9

Q ss_pred             CCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhHHHHHhcC----CcCceEEEEEeCC--------CCceEEE
Q 021080            5 IEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVG----SSENLLCVCAFDP--------ENLWQLY   72 (317)
Q Consensus         5 ~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~~~~~~~~----~~~~~l~v~gg~~--------~~~~~~y   72 (317)
                      -+.|-++.|.+++..+..+..-...         ..+-.-+.+|....    ...+.|++|||+.        .+++|.|
T Consensus        33 ~~e~de~~i~~~iq~~eaK~~e~~~---------e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Y  103 (521)
T KOG1230|consen   33 NEELDEADIAEIIQSLEAKQIEHVV---------ETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSY  103 (521)
T ss_pred             CcccchHHHHHHHHhhhhhccceee---------eccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEE
Confidence            3456677777788777666431110         11111222222211    1244888999953        5899999


Q ss_pred             eCCCCCEeecCCCCccccccCCeeEEEeC-CEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeE
Q 021080           73 DPLRDLWITLPVLPSKIRHLAHFGVVSTA-GKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAE  151 (317)
Q Consensus        73 d~~~~~W~~~~~~p~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~  151 (317)
                      |.+.++|..+. .|+.|++|+.|+++++- |.+|+|||....-              .-.           ..--.++.|
T Consensus       104 n~k~~eWkk~~-spn~P~pRsshq~va~~s~~l~~fGGEfaSP--------------nq~-----------qF~HYkD~W  157 (521)
T KOG1230|consen  104 NTKKNEWKKVV-SPNAPPPRSSHQAVAVPSNILWLFGGEFASP--------------NQE-----------QFHHYKDLW  157 (521)
T ss_pred             eccccceeEec-cCCCcCCCccceeEEeccCeEEEeccccCCc--------------chh-----------hhhhhhhee
Confidence            99999999984 44444569888877775 8999999974321              000           011257899


Q ss_pred             EeeCCCCceeeC--CCCCccCCCceEEEEECCEEEEEec---------CceeEEEEeCCCCcEEeccCCc--c----CCc
Q 021080          152 MYDPEKDVWVPI--PDLHRTHNSACTGVVIGGKVHVLHK---------GLSTVQVLDHMGLGWTVEDYGW--L----QGP  214 (317)
Q Consensus       152 ~yd~~t~~W~~~--~~~p~~~r~~~~~~~~~g~lyv~gG---------~~~~v~~yd~~~~~W~~~~~~~--~----~~~  214 (317)
                      +||..+++|+++  +.-|.+ |.+|..++...+|++|||         ..+++++||+.+-+|+.+.+.-  +    .+.
T Consensus       158 ~fd~~trkweql~~~g~PS~-RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq  236 (521)
T KOG1230|consen  158 LFDLKTRKWEQLEFGGGPSP-RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQ  236 (521)
T ss_pred             eeeeccchheeeccCCCCCC-CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcce
Confidence            999999999988  567888 999999999999999999         4689999999999999997632  2    445


Q ss_pred             EEEE-cCeEEEEeC----------------cEEEEecCCc-------eEEEeccc-cccccccEEEEEE-CCeEEEEeCc
Q 021080          215 MAIV-HDSVYLMSH----------------GLIIKQHRDV-------RKVVASAS-EFRRRIGFAMIGM-GDDIYVIGGV  268 (317)
Q Consensus       215 ~~~~-~~~ly~~g~----------------~~~~~yd~~~-------W~~v~~~~-~~~~r~~~~~~~~-~~~lyv~GG~  268 (317)
                      .++. .|.||++||                ++++.++++.       |..+.+.. .|.+|.+++++.. +++-+.|||.
T Consensus       237 ~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV  316 (521)
T KOG1230|consen  237 FSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGV  316 (521)
T ss_pred             EEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecce
Confidence            5555 899999998                4788887654       77777553 2478999988877 5699999999


Q ss_pred             ccCC--CCceecccCcceeEeecCCCCCceeec
Q 021080          269 IGPD--RWNWDIKPMSDVDVLTVGAERPTWRQV  299 (317)
Q Consensus       269 ~~~~--~~~~~~~~~~~v~~yd~~~~~~~W~~~  299 (317)
                      .+..  +........++++.||+..+  +|...
T Consensus       317 ~D~eeeeEsl~g~F~NDLy~fdlt~n--rW~~~  347 (521)
T KOG1230|consen  317 CDLEEEEESLSGEFFNDLYFFDLTRN--RWSEG  347 (521)
T ss_pred             ecccccchhhhhhhhhhhhheecccc--hhhHh
Confidence            7733  23334467899999999999  99876

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.86  E-value=2.9e-20  Score=174.39  Aligned_cols=187  Identities=18%  Similarity=0.216  Sum_probs=153.3

Q ss_pred             cccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeC---C
Q 021080           88 KIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI---P  164 (317)
Q Consensus        88 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~---~  164 (317)
                      .|.+|..|+++.+++++||+||......                            . ...+++++|.++..|...   .
T Consensus        57 ~p~~R~~hs~~~~~~~~~vfGG~~~~~~----------------------------~-~~~dl~~~d~~~~~w~~~~~~g  107 (482)
T KOG0379|consen   57 GPIPRAGHSAVLIGNKLYVFGGYGSGDR----------------------------L-TDLDLYVLDLESQLWTKPAATG  107 (482)
T ss_pred             CcchhhccceeEECCEEEEECCCCCCCc----------------------------c-ccceeEEeecCCcccccccccC
Confidence            3445999999999999999999864321                            1 111699999999999876   4


Q ss_pred             CCCccCCCceEEEEECCEEEEEecC------ceeEEEEeCCCCcEEeccCC---cc---CCcEEEEcCeEEEEeC-----
Q 021080          165 DLHRTHNSACTGVVIGGKVHVLHKG------LSTVQVLDHMGLGWTVEDYG---WL---QGPMAIVHDSVYLMSH-----  227 (317)
Q Consensus       165 ~~p~~~r~~~~~~~~~g~lyv~gG~------~~~v~~yd~~~~~W~~~~~~---~~---~~~~~~~~~~ly~~g~-----  227 (317)
                      ..|.+ |++|..+.++.+||++||.      .+++..||+.+.+|..+...   ++   .|.+++++++||++||     
T Consensus       108 ~~p~~-r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~  186 (482)
T KOG0379|consen  108 DEPSP-RYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTG  186 (482)
T ss_pred             CCCCc-ccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcc
Confidence            56778 9999999999999999993      35999999999999977532   22   7888999999999998     


Q ss_pred             ---cEEEEecCCc--eEEEeccc-cccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecc-
Q 021080          228 ---GLIIKQHRDV--RKVVASAS-EFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVS-  300 (317)
Q Consensus       228 ---~~~~~yd~~~--W~~v~~~~-~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~-  300 (317)
                         ++++.||+++  |.++.... .+.+|.+|+++++++++++|||.+..+      .+++|++.+|+.+.  +|..+. 
T Consensus       187 ~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~------~~l~D~~~ldl~~~--~W~~~~~  258 (482)
T KOG0379|consen  187 DSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGD------VYLNDVHILDLSTW--EWKLLPT  258 (482)
T ss_pred             cceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCC------ceecceEeeecccc--eeeeccc
Confidence               6899999988  99988554 347899999999999999999988333      58899999999998  999764 


Q ss_pred             --cCCCCCCceeeee
Q 021080          301 --PMTRCRGTILGCT  313 (317)
Q Consensus       301 --~~p~~~~~~~~~~  313 (317)
                        .+|.+|.. |..+
T Consensus       259 ~g~~p~~R~~-h~~~  272 (482)
T KOG0379|consen  259 GGDLPSPRSG-HSLT  272 (482)
T ss_pred             cCCCCCCcce-eeeE
Confidence              46999998 4444

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.84  E-value=5.7e-20  Score=160.22  Aligned_cols=196  Identities=15%  Similarity=0.183  Sum_probs=151.8

Q ss_pred             ccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeC--CCC
Q 021080           91 HLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI--PDL  166 (317)
Q Consensus        91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~--~~~  166 (317)
                      +|.++++++.  .+.+++|||..-.         |.                  -.-..++++.||.++++|+++  ++.
T Consensus        66 pRsn~sl~~nPekeELilfGGEf~n---------gq------------------kT~vYndLy~Yn~k~~eWkk~~spn~  118 (521)
T KOG1230|consen   66 PRSNPSLFANPEKEELILFGGEFYN---------GQ------------------KTHVYNDLYSYNTKKNEWKKVVSPNA  118 (521)
T ss_pred             CCCCcceeeccCcceeEEecceeec---------ce------------------eEEEeeeeeEEeccccceeEeccCCC
Confidence            4998887765  5689999996421         11                  122357899999999999988  566


Q ss_pred             CccCCCceEEEEEC-CEEEEEec-----------CceeEEEEeCCCCcEEeccCCc-----cCCcEEEEcCeEEEEeC--
Q 021080          167 HRTHNSACTGVVIG-GKVHVLHK-----------GLSTVQVLDHMGLGWTVEDYGW-----LQGPMAIVHDSVYLMSH--  227 (317)
Q Consensus       167 p~~~r~~~~~~~~~-g~lyv~gG-----------~~~~v~~yd~~~~~W~~~~~~~-----~~~~~~~~~~~ly~~g~--  227 (317)
                      |.+ |..|++|++. |.+|++||           --.+++.||+.+++|+.+.-.-     ..|.+++-..+|+++||  
T Consensus       119 P~p-Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFh  197 (521)
T KOG1230|consen  119 PPP-RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFH  197 (521)
T ss_pred             cCC-CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEccee
Confidence            778 9999988876 89999999           1257999999999999986322     16788899999999998  


Q ss_pred             ---------cEEEEecCCc--eEEEeccc-cccccccEEEEEE-CCeEEEEeCcccCC--CCceecccCcceeEeecCCC
Q 021080          228 ---------GLIIKQHRDV--RKVVASAS-EFRRRIGFAMIGM-GDDIYVIGGVIGPD--RWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       228 ---------~~~~~yd~~~--W~~v~~~~-~~~~r~~~~~~~~-~~~lyv~GG~~~~~--~~~~~~~~~~~v~~yd~~~~  292 (317)
                               +++|+||.++  |+++.... .|.+|.++.+.+. +|.|||.||++..-  ....++...+|+|+.+++++
T Consensus       198 d~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~  277 (521)
T KOG1230|consen  198 DSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDG  277 (521)
T ss_pred             cCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcC
Confidence                     6899999998  99998722 2589999999888 99999999987542  11112457789999999984


Q ss_pred             -CC--ceeeccc---CCCCCCceeeeeEe
Q 021080          293 -RP--TWRQVSP---MTRCRGTILGCTQL  315 (317)
Q Consensus       293 -~~--~W~~~~~---~p~~~~~~~~~~~~  315 (317)
                       .+  .|+.+-+   .|.+|++ ++||+.
T Consensus       278 ~~dKw~W~kvkp~g~kPspRsg-fsv~va  305 (521)
T KOG1230|consen  278 REDKWVWTKVKPSGVKPSPRSG-FSVAVA  305 (521)
T ss_pred             CCcceeEeeccCCCCCCCCCCc-eeEEEe
Confidence             22  4677744   4999999 677763

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.81  E-value=3e-19  Score=159.47  Aligned_cols=248  Identities=15%  Similarity=0.203  Sum_probs=169.1

Q ss_pred             hHHHhhcCh-hhHHHHHhcCC--cCceEEEEEeCC---CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEE
Q 021080           34 SWRAAIRSP-ELFKARQEVGS--SENLLCVCAFDP---ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVL  107 (317)
Q Consensus        34 ~w~~l~~s~-~~~~~~~~~~~--~~~~l~v~gg~~---~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~  107 (317)
                      +||.+..+- ..+++|..|.+  ....+.+|||..   .++++.||..+++|.--.....-|++...|..+-.|.+||+|
T Consensus        18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvF   97 (830)
T KOG4152|consen   18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVF   97 (830)
T ss_pred             ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEE
Confidence            677654332 34555554443  477888998854   678999999999998643322223358888999999999999


Q ss_pred             cCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCC-------CCCccCCCceEEEEEC
Q 021080          108 GGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIP-------DLHRTHNSACTGVVIG  180 (317)
Q Consensus       108 GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~-------~~p~~~r~~~~~~~~~  180 (317)
                      ||..+.                              +...++.+......-.|+++.       ++|-+ |.+|+-.+++
T Consensus        98 GGMvEY------------------------------GkYsNdLYELQasRWeWkrlkp~~p~nG~pPCP-RlGHSFsl~g  146 (830)
T KOG4152|consen   98 GGMVEY------------------------------GKYSNDLYELQASRWEWKRLKPKTPKNGPPPCP-RLGHSFSLVG  146 (830)
T ss_pred             ccEeee------------------------------ccccchHHHhhhhhhhHhhcCCCCCCCCCCCCC-ccCceeEEec
Confidence            998542                              223344322222233466662       35667 9999999999


Q ss_pred             CEEEEEec--------------CceeEEEEeCCCCc----EEecc------CCccCCcEEEE------cCeEEEEeC---
Q 021080          181 GKVHVLHK--------------GLSTVQVLDHMGLG----WTVED------YGWLQGPMAIV------HDSVYLMSH---  227 (317)
Q Consensus       181 g~lyv~gG--------------~~~~v~~yd~~~~~----W~~~~------~~~~~~~~~~~------~~~ly~~g~---  227 (317)
                      +|-|+|||              .+++++..+++-+.    |+..-      .....|.++.+      ..+||++||   
T Consensus       147 nKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G  226 (830)
T KOG4152|consen  147 NKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG  226 (830)
T ss_pred             cEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc
Confidence            99999999              45778888776443    87442      11126677666      237999998   


Q ss_pred             ---cEEEEecCCc--eEEEeccc-cccccccEEEEEECCeEEEEeCcccCCCCce-------ecccCcceeEeecCCCCC
Q 021080          228 ---GLIIKQHRDV--RKVVASAS-EFRRRIGFAMIGMGDDIYVIGGVIGPDRWNW-------DIKPMSDVDVLTVGAERP  294 (317)
Q Consensus       228 ---~~~~~yd~~~--W~~v~~~~-~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~-------~~~~~~~v~~yd~~~~~~  294 (317)
                         +++|.+|.++  |.+..--. .+++|.-|..+.+++|+|||||.-..-+...       +=+-.+.+-++++.+.  
T Consensus       227 ~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~--  304 (830)
T KOG4152|consen  227 CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM--  304 (830)
T ss_pred             ccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecch--
Confidence               6899999998  98765222 1378999999999999999999643221111       0123445678899998  


Q ss_pred             ceeecc-------cCCCCCCceeeeeEe
Q 021080          295 TWRQVS-------PMTRCRGTILGCTQL  315 (317)
Q Consensus       295 ~W~~~~-------~~p~~~~~~~~~~~~  315 (317)
                      .|+.+-       ..|++|.+ |+++++
T Consensus       305 ~W~tl~~d~~ed~tiPR~RAG-HCAvAi  331 (830)
T KOG4152|consen  305 AWETLLMDTLEDNTIPRARAG-HCAVAI  331 (830)
T ss_pred             heeeeeecccccccccccccc-ceeEEe
Confidence            998772       26899998 566554

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.72  E-value=7.5e-17  Score=144.28  Aligned_cols=221  Identities=15%  Similarity=0.166  Sum_probs=151.4

Q ss_pred             hhhcCHhHHHhhcChhhHHHHHhcCC--cCceEEEEEe-----CCCCceEEEeCCCCCEeecCCCC----ccccccCCee
Q 021080           28 LELVSRSWRAAIRSPELFKARQEVGS--SENLLCVCAF-----DPENLWQLYDPLRDLWITLPVLP----SKIRHLAHFG   96 (317)
Q Consensus        28 ~~~v~k~w~~l~~s~~~~~~~~~~~~--~~~~l~v~gg-----~~~~~~~~yd~~~~~W~~~~~~p----~~~~~r~~~~   96 (317)
                      +....++|..=.-..+.+...+.++.  .++.+|+|||     ...+++|-+.-..=+|.++.+-+    .+||+|-+|+
T Consensus        62 YNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHS  141 (830)
T KOG4152|consen   62 YNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHS  141 (830)
T ss_pred             hccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCce
Confidence            34445666653333455555556554  4889999998     23566554444444566664322    2367799999


Q ss_pred             EEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCC----ceeeC---CCCCcc
Q 021080           97 VVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKD----VWVPI---PDLHRT  169 (317)
Q Consensus        97 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~----~W~~~---~~~p~~  169 (317)
                      ...++++.|+|||.....+                  |++.    .....+++.++.+..-+    .|...   +.+|.+
T Consensus       142 Fsl~gnKcYlFGGLaNdse------------------Dpkn----NvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~p  199 (830)
T KOG4152|consen  142 FSLVGNKCYLFGGLANDSE------------------DPKN----NVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP  199 (830)
T ss_pred             eEEeccEeEEecccccccc------------------Cccc----ccchhhcceEEEEeccCCceEEEecccccCCCCCC
Confidence            9999999999999754321                  1111    12334566666665533    47654   678889


Q ss_pred             CCCceEEEEE------CCEEEEEec----CceeEEEEeCCCCcEEecc-----CCcc-CCcEEEEcCeEEEEeC------
Q 021080          170 HNSACTGVVI------GGKVHVLHK----GLSTVQVLDHMGLGWTVED-----YGWL-QGPMAIVHDSVYLMSH------  227 (317)
Q Consensus       170 ~r~~~~~~~~------~g~lyv~gG----~~~~v~~yd~~~~~W~~~~-----~~~~-~~~~~~~~~~ly~~g~------  227 (317)
                       |..|.++++      ..++||+||    .+.+++.+|+.+-.|.+..     +++. .|++.+++|+||++||      
T Consensus       200 -RESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~  278 (830)
T KOG4152|consen  200 -RESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVM  278 (830)
T ss_pred             -cccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeec
Confidence             999999887      337999999    5789999999999998765     3333 6788899999999998      


Q ss_pred             ---------------cEEEEecCCc--eEEEec-----cccccccccEEEEEECCeEEEEeCcccC
Q 021080          228 ---------------GLIIKQHRDV--RKVVAS-----ASEFRRRIGFAMIGMGDDIYVIGGVIGP  271 (317)
Q Consensus       228 ---------------~~~~~yd~~~--W~~v~~-----~~~~~~r~~~~~~~~~~~lyv~GG~~~~  271 (317)
                                     +.+-+++.++  |+.+-.     -..+..|.+|.+++++.++|+..|.++.
T Consensus       279 ~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGY  344 (830)
T KOG4152|consen  279 DDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGY  344 (830)
T ss_pred             cccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchh
Confidence                           1233444444  886541     1123789999999999999999998764

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.72  E-value=5.1e-16  Score=133.86  Aligned_cols=201  Identities=16%  Similarity=0.203  Sum_probs=152.7

Q ss_pred             cCceEEEEEeCCCCceEEEeCCC--CCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCccccccee
Q 021080           54 SENLLCVCAFDPENLWQLYDPLR--DLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW  131 (317)
Q Consensus        54 ~~~~l~v~gg~~~~~~~~yd~~~--~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~  131 (317)
                      .++.+||..|..-..++..|...  ..|.++...|..  .|.....++++++||||||.-....            .   
T Consensus        45 ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~--~rnqa~~a~~~~kLyvFgG~Gk~~~------------~---  107 (381)
T COG3055          45 IGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGG--ARNQAVAAVIGGKLYVFGGYGKSVS------------S---  107 (381)
T ss_pred             ecceEEEEeccCCccceehhhhcCCCCceEcccCCCc--ccccchheeeCCeEEEeeccccCCC------------C---
Confidence            47799998887677889998875  579999999986  6999999999999999999743210            1   


Q ss_pred             EecccCCCCCCCcCCCceeEEeeCCCCceeeCC-CCCccCCCceEEEEECC-EEEEEec---------------------
Q 021080          132 SYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIP-DLHRTHNSACTGVVIGG-KVHVLHK---------------------  188 (317)
Q Consensus       132 ~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~-~~p~~~r~~~~~~~~~g-~lyv~gG---------------------  188 (317)
                                 .....+++++|||.+|+|+++. -.|.. ..+++++.+++ +||++||                     
T Consensus       108 -----------~~~~~nd~Y~y~p~~nsW~kl~t~sP~g-l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~  175 (381)
T COG3055         108 -----------SPQVFNDAYRYDPSTNSWHKLDTRSPTG-LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKE  175 (381)
T ss_pred             -----------CceEeeeeEEecCCCChhheeccccccc-cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHH
Confidence                       1345689999999999999994 45666 67888888888 9999999                     


Q ss_pred             ------------------CceeEEEEeCCCCcEEeccCCcc--CCcEEEE--cCeEEEEeC-------------------
Q 021080          189 ------------------GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIV--HDSVYLMSH-------------------  227 (317)
Q Consensus       189 ------------------~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~--~~~ly~~g~-------------------  227 (317)
                                        ...++..|||++++|+.....+-  .+.++++  +|++.++.|                   
T Consensus       176 ~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~  255 (381)
T COG3055         176 AVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGD  255 (381)
T ss_pred             HHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccC
Confidence                              24679999999999998874332  2222221  232333322                   


Q ss_pred             ----------------------------------------------------------------cEEEEecCCceEEEec
Q 021080          228 ----------------------------------------------------------------GLIIKQHRDVRKVVAS  243 (317)
Q Consensus       228 ----------------------------------------------------------------~~~~~yd~~~W~~v~~  243 (317)
                                                                                      ++|+.+|...|+.+..
T Consensus       256 ~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~Ge  335 (381)
T COG3055         256 NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGE  335 (381)
T ss_pred             ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecc
Confidence                                                                            2788899777999999


Q ss_pred             cccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCC
Q 021080          244 ASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA  291 (317)
Q Consensus       244 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~  291 (317)
                      +|  +..+..+.+.++++||+|||....+      +....++..-...
T Consensus       336 Lp--~~l~YG~s~~~nn~vl~IGGE~~~G------ka~~~v~~l~~~g  375 (381)
T COG3055         336 LP--QGLAYGVSLSYNNKVLLIGGETSGG------KATTRVYSLSWDG  375 (381)
T ss_pred             cC--CCccceEEEecCCcEEEEccccCCC------eeeeeEEEEEEcC
Confidence            99  6788888899999999999988776      4555666554443

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.53  E-value=2.4e-13  Score=117.51  Aligned_cols=183  Identities=18%  Similarity=0.268  Sum_probs=141.4

Q ss_pred             ecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCC--C
Q 021080           81 TLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEK--D  158 (317)
Q Consensus        81 ~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t--~  158 (317)
                      ++|.+|..   .-+-+.+.+++.+||-=|..+                                   ...+..|.+.  .
T Consensus        29 ~lPdlPvg---~KnG~Ga~ig~~~YVGLGs~G-----------------------------------~afy~ldL~~~~k   70 (381)
T COG3055          29 QLPDLPVG---FKNGAGALIGDTVYVGLGSAG-----------------------------------TAFYVLDLKKPGK   70 (381)
T ss_pred             cCCCCCcc---ccccccceecceEEEEeccCC-----------------------------------ccceehhhhcCCC
Confidence            45666664   333466788899998777432                                   2334444443  5


Q ss_pred             ceeeCCCCCccCCCceEEEEECCEEEEEec----------CceeEEEEeCCCCcEEeccCCcc----CCcEEEEcC-eEE
Q 021080          159 VWVPIPDLHRTHNSACTGVVIGGKVHVLHK----------GLSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHD-SVY  223 (317)
Q Consensus       159 ~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG----------~~~~v~~yd~~~~~W~~~~~~~~----~~~~~~~~~-~ly  223 (317)
                      .|+++..+|-+-|....+++++++||++||          ..+++++||+.+++|..+....+    .+..+..++ ++|
T Consensus        71 ~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~  150 (381)
T COG3055          71 GWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIY  150 (381)
T ss_pred             CceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEE
Confidence            799999998765888888999999999999          34789999999999999987665    455566666 899


Q ss_pred             EEeC-----------------------------------------cEEEEecCCc--eEEEeccccccccccEEEEEECC
Q 021080          224 LMSH-----------------------------------------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGD  260 (317)
Q Consensus       224 ~~g~-----------------------------------------~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~  260 (317)
                      ++||                                         ..+..|++++  |+.+...|- .++++.+++.-++
T Consensus       151 f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf-~~~aGsa~~~~~n  229 (381)
T COG3055         151 FFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPF-YGNAGSAVVIKGN  229 (381)
T ss_pred             EEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcc-cCccCcceeecCC
Confidence            9987                                         1678899887  999998884 5677766666788


Q ss_pred             eEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCc
Q 021080          261 DIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGT  308 (317)
Q Consensus       261 ~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~  308 (317)
                      ++.+|.|...++      .....+++++...+..+|..++++|.+.+.
T Consensus       230 ~~~lInGEiKpG------LRt~~~k~~~~~~~~~~w~~l~~lp~~~~~  271 (381)
T COG3055         230 KLTLINGEIKPG------LRTAEVKQADFGGDNLKWLKLSDLPAPIGS  271 (381)
T ss_pred             eEEEEcceecCC------ccccceeEEEeccCceeeeeccCCCCCCCC
Confidence            899999998887      455688999998777799999998887665

>PF13964 Kelch_6: Kelch motif

Probab=99.30  E-value=5.5e-12  Score=80.58  Aligned_cols=50  Identities=34%  Similarity=0.579  Sum_probs=45.2

Q ss_pred             ccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCC
Q 021080          249 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCR  306 (317)
Q Consensus       249 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~  306 (317)
                      +|.++++++++++|||+||.....      ...+++++||++++  +|+++++||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~------~~~~~v~~yd~~t~--~W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSG------KYSNDVERYDPETN--TWEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCC------CccccEEEEcCCCC--cEEECCCCCCCC
Confidence            378889999999999999998752      47889999999999  999999999987

>PF13964 Kelch_6: Kelch motif

Probab=99.26  E-value=1.8e-11  Score=78.12  Aligned_cols=49  Identities=29%  Similarity=0.583  Sum_probs=43.3

Q ss_pred             cCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCC
Q 021080           92 LAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHN  171 (317)
Q Consensus        92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r  171 (317)
                      |.++++++++++|||+||....                              ....+++++||+++++|+.+++||.+ |
T Consensus         2 R~~~s~v~~~~~iyv~GG~~~~------------------------------~~~~~~v~~yd~~t~~W~~~~~mp~p-R   50 (50)
T PF13964_consen    2 RYGHSAVVVGGKIYVFGGYDNS------------------------------GKYSNDVERYDPETNTWEQLPPMPTP-R   50 (50)
T ss_pred             CccCEEEEECCEEEEECCCCCC------------------------------CCccccEEEEcCCCCcEEECCCCCCC-C
Confidence            8899999999999999998641                              24578999999999999999999988 5

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.08  E-value=1.9e-10  Score=72.37  Aligned_cols=47  Identities=38%  Similarity=0.763  Sum_probs=42.1

Q ss_pred             ccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCC
Q 021080          249 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMT  303 (317)
Q Consensus       249 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p  303 (317)
                      +|.++++++++++||++||.....      ...+.+++||++++  +|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~------~~~~~v~~yd~~~~--~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNN------QPTNSVEVYDPETN--TWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTS------SBEEEEEEEETTTT--EEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccC------ceeeeEEEEeCCCC--EEEEcCCCC
Confidence            478899999999999999999843      57889999999999  999999987

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.08  E-value=6.2e-11  Score=106.56  Aligned_cols=165  Identities=16%  Similarity=0.193  Sum_probs=120.6

Q ss_pred             CCCCEeecCCCC-------ccccccCCeeEEEeCC--EEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcC
Q 021080           75 LRDLWITLPVLP-------SKIRHLAHFGVVSTAG--KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRK  145 (317)
Q Consensus        75 ~~~~W~~~~~~p-------~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~  145 (317)
                      .+-+|.++++-.       ..|+.|.+|.++...+  .||+.||.++.                               +
T Consensus       237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-------------------------------~  285 (723)
T KOG2437|consen  237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-------------------------------Q  285 (723)
T ss_pred             ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-------------------------------h
Confidence            355787765433       3356699999997765  89999999763                               3


Q ss_pred             CCceeEEeeCCCCceeeC---CCCCccCCCceEEEEECC--EEEEEec-----------CceeEEEEeCCCCcEEeccCC
Q 021080          146 SISQAEMYDPEKDVWVPI---PDLHRTHNSACTGVVIGG--KVHVLHK-----------GLSTVQVLDHMGLGWTVEDYG  209 (317)
Q Consensus       146 ~~~~~~~yd~~t~~W~~~---~~~p~~~r~~~~~~~~~g--~lyv~gG-----------~~~~v~~yd~~~~~W~~~~~~  209 (317)
                      .+.+.|.|+...+.|..+   ...|.. |.-|..|..-.  |+|++|.           ..+++++||..++.|..+.--
T Consensus       286 ~l~DFW~Y~v~e~~W~~iN~~t~~PG~-RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~d  364 (723)
T KOG2437|consen  286 DLADFWAYSVKENQWTCINRDTEGPGA-RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSED  364 (723)
T ss_pred             hHHHHHhhcCCcceeEEeecCCCCCcc-hhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccc
Confidence            467888899999999987   346666 87777776544  8999997           346899999999999877522


Q ss_pred             c-----c----CCcEEEEcCe--EEEEeC----------cEEEEecCCc--eEEEecccc--------ccccccEEEEEE
Q 021080          210 W-----L----QGPMAIVHDS--VYLMSH----------GLIIKQHRDV--RKVVASASE--------FRRRIGFAMIGM  258 (317)
Q Consensus       210 ~-----~----~~~~~~~~~~--ly~~g~----------~~~~~yd~~~--W~~v~~~~~--------~~~r~~~~~~~~  258 (317)
                      .     |    .+.+++.+++  +|++||          +.+|.|+.+.  |..+..-..        ...|.++.|-.+
T Consensus       365 t~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~  444 (723)
T KOG2437|consen  365 TAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFH  444 (723)
T ss_pred             ccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhc
Confidence            1     1    5777887776  999998          5799999876  876552221        145566555444


Q ss_pred             --CCeEEEEeCcccC
Q 021080          259 --GDDIYVIGGVIGP  271 (317)
Q Consensus       259 --~~~lyv~GG~~~~  271 (317)
                        +.++|++||....
T Consensus       445 ~~n~~ly~fggq~s~  459 (723)
T KOG2437|consen  445 SKNRCLYVFGGQRSK  459 (723)
T ss_pred             CCCCeEEeccCcccc
Confidence              6689999986654

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.02  E-value=2.8e-10  Score=71.58  Aligned_cols=46  Identities=26%  Similarity=0.619  Sum_probs=41.1

Q ss_pred             cCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCC
Q 021080           92 LAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLH  167 (317)
Q Consensus        92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p  167 (317)
                      |.++++++++++|||+||.+..                              ....+++++||+++++|+.+++||
T Consensus         2 R~~~~~~~~~~~iyv~GG~~~~------------------------------~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    2 RSGHAAVVVGNKIYVIGGYDGN------------------------------NQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             BBSEEEEEETTEEEEEEEBEST------------------------------SSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CccCEEEEECCEEEEEeeeccc------------------------------CceeeeEEEEeCCCCEEEEcCCCC
Confidence            8899999999999999998641                              456799999999999999999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.91  E-value=3.1e-09  Score=67.39  Aligned_cols=48  Identities=25%  Similarity=0.473  Sum_probs=40.8

Q ss_pred             CCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeE
Q 021080          259 GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQ  314 (317)
Q Consensus       259 ~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~  314 (317)
                      +++|||+||......     ...+++++||++++  +|++++++|.+|.+ |++++
T Consensus         1 g~~~~vfGG~~~~~~-----~~~nd~~~~~~~~~--~W~~~~~~P~~R~~-h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGG-----TRLNDVWVFDLDTN--TWTRIGDLPPPRSG-HTATV   48 (49)
T ss_pred             CCEEEEECCcCCCCC-----CEecCEEEEECCCC--EEEECCCCCCCccc-eEEEE
Confidence            589999999984221     47899999999999  99999999999999 67665

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.91  E-value=3.6e-09  Score=67.10  Aligned_cols=49  Identities=29%  Similarity=0.487  Sum_probs=40.3

Q ss_pred             ccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCC
Q 021080          249 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMT  303 (317)
Q Consensus       249 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p  303 (317)
                      +|.+|++++++++|||+||......    ....+++++||++++  +|+++++||
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~----~~~~~~v~~~d~~t~--~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNG----GSSSNDVWVFDTETN--QWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCC----CcccceeEEEECCCC--EEeecCCCC
Confidence            4788999999999999999911111    147889999999999  999999875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.89  E-value=2.5e-09  Score=67.82  Aligned_cols=48  Identities=25%  Similarity=0.623  Sum_probs=31.5

Q ss_pred             ccccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCC
Q 021080          249 RRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTR  304 (317)
Q Consensus       249 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~  304 (317)
                      +|.+|+++.+ +++|||+||.+..+      ...+++++||++++  +|++++++|.
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~------~~~~d~~~~d~~~~--~W~~~~~~P~   49 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSG------SPLNDLWIFDIETN--TWTRLPSMPS   49 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-T------EE---EEEEETTTT--EEEE--SS--
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCC------cccCCEEEEECCCC--EEEECCCCCC
Confidence            4788898888 58999999998875      47899999999999  9999988874

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.85  E-value=1e-08  Score=65.03  Aligned_cols=48  Identities=21%  Similarity=0.399  Sum_probs=39.9

Q ss_pred             cCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCC
Q 021080           92 LAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLH  167 (317)
Q Consensus        92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p  167 (317)
                      |.+|++++++++|||+||....                            ......+++++||+++++|+.+++|+
T Consensus         2 r~~hs~~~~~~kiyv~GG~~~~----------------------------~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    2 RYGHSAVVLDGKIYVFGGYGTD----------------------------NGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             ccceEEEEECCEEEEECCcccC----------------------------CCCcccceeEEEECCCCEEeecCCCC
Confidence            8899999999999999998111                            02445789999999999999998875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.83  E-value=3.1e-06  Score=72.29  Aligned_cols=202  Identities=11%  Similarity=0.033  Sum_probs=119.6

Q ss_pred             CcCceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080           53 SSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS  132 (317)
Q Consensus        53 ~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  132 (317)
                      ..++.|++...   ..+..+||.|++|..+++.+..   +...     +...+.+ |++...    +      ..+-+..
T Consensus         3 sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~---~~~~-----~~~~~~~-G~d~~~----~------~YKVv~~   60 (230)
T TIGR01640         3 PCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSR---RSNK-----ESDTYFL-GYDPIE----K------QYKVLCF   60 (230)
T ss_pred             ccceEEEEecC---CcEEEECCCCCCEEecCCCCCc---cccc-----ccceEEE-eecccC----C------cEEEEEE
Confidence            34667765543   6889999999999999765432   1110     0112333 232211    1      2222333


Q ss_pred             ecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecC----c-eeEEEEeCCCCcEEe-c
Q 021080          133 YDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKG----L-STVQVLDHMGLGWTV-E  206 (317)
Q Consensus       133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~----~-~~v~~yd~~~~~W~~-~  206 (317)
                      ++...      ......+++|+..+++|+.+...+........++.++|.||++...    . ..|.+||..+++|+. +
T Consensus        61 ~~~~~------~~~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i  134 (230)
T TIGR01640        61 SDRSG------NRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFI  134 (230)
T ss_pred             EeecC------CCCCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeee
Confidence            32211      1124688999999999999875433211122388999999999751    1 279999999999995 6


Q ss_pred             cCCcc------CCcEEEEcCeEEEEeC------cEEEEec---CCceEEEeccccc-ccc----ccEEEEEECCeEEEEe
Q 021080          207 DYGWL------QGPMAIVHDSVYLMSH------GLIIKQH---RDVRKVVASASEF-RRR----IGFAMIGMGDDIYVIG  266 (317)
Q Consensus       207 ~~~~~------~~~~~~~~~~ly~~g~------~~~~~yd---~~~W~~v~~~~~~-~~r----~~~~~~~~~~~lyv~G  266 (317)
                      +.+..      ....+.++|+|.++..      -++|..+   .+.|++.-.++.+ ..+    .....+..+|+|++..
T Consensus       135 ~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~  214 (230)
T TIGR01640       135 PLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCC  214 (230)
T ss_pred             ecCccccccccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEe
Confidence            53322      2345677899988753      2566664   2239987666521 111    1133455678888876


Q ss_pred             CcccCCCCceecccCcceeEeecCCC
Q 021080          267 GVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       267 G~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ... .         ..-+..||++++
T Consensus       215 ~~~-~---------~~~~~~y~~~~~  230 (230)
T TIGR01640       215 EDE-N---------PFYIFYYNVGEN  230 (230)
T ss_pred             CCC-C---------ceEEEEEeccCC
Confidence            531 1         114788999874

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.83  E-value=1.1e-08  Score=64.91  Aligned_cols=49  Identities=31%  Similarity=0.536  Sum_probs=41.2

Q ss_pred             CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEE
Q 021080          101 AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI  179 (317)
Q Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~  179 (317)
                      +++|||+||....                             .....+++++||+.+++|++++++|.+ |..|+++++
T Consensus         1 g~~~~vfGG~~~~-----------------------------~~~~~nd~~~~~~~~~~W~~~~~~P~~-R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDD-----------------------------GGTRLNDVWVFDLDTNTWTRIGDLPPP-RSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCC-----------------------------CCCEecCEEEEECCCCEEEECCCCCCC-ccceEEEEC
Confidence            5899999998631                             144578999999999999999999999 999988763

>smart00612 Kelch Kelch domain

Probab=98.77  E-value=1.5e-08  Score=63.42  Aligned_cols=35  Identities=34%  Similarity=0.749  Sum_probs=31.6

Q ss_pred             CCceeEEeeCCCCceeeCCCCCccCCCceEEEEECC
Q 021080          146 SISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG  181 (317)
Q Consensus       146 ~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g  181 (317)
                      ..+++++||+++++|+.+++|+.+ |..+++++++|
T Consensus        13 ~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~~g   47 (47)
T smart00612       13 RLKSVEVYDPETNKWTPLPSMPTP-RSGHGVAVING   47 (47)
T ss_pred             eeeeEEEECCCCCeEccCCCCCCc-cccceEEEeCC
Confidence            468899999999999999999999 99998888775

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.77  E-value=9.2e-09  Score=65.23  Aligned_cols=46  Identities=20%  Similarity=0.490  Sum_probs=30.2

Q ss_pred             cCCeeEEEe-CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCC
Q 021080           92 LAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLH  167 (317)
Q Consensus        92 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p  167 (317)
                      |..|+++.+ +++|||+||.+..                              ....+++++||+++++|+++++||
T Consensus         2 R~~h~~~~~~~~~i~v~GG~~~~------------------------------~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    2 RYGHSAVSIGDNSIYVFGGRDSS------------------------------GSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             -BS-EEEEE-TTEEEEE--EEE-------------------------------TEE---EEEEETTTTEEEE--SS-
T ss_pred             cceEEEEEEeCCeEEEECCCCCC------------------------------CcccCCEEEEECCCCEEEECCCCC
Confidence            888998888 5899999998642                              245789999999999999998887

>smart00612 Kelch Kelch domain

Probab=98.74  E-value=1.5e-08  Score=63.44  Aligned_cols=46  Identities=26%  Similarity=0.538  Sum_probs=38.9

Q ss_pred             eEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEee
Q 021080          261 DIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLR  316 (317)
Q Consensus       261 ~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~~  316 (317)
                      +||++||....       ...+++++||++++  +|+.+++||.+|.. +++++++
T Consensus         1 ~iyv~GG~~~~-------~~~~~v~~yd~~~~--~W~~~~~~~~~r~~-~~~~~~~   46 (47)
T smart00612        1 KIYVVGGFDGG-------QRLKSVEVYDPETN--KWTPLPSMPTPRSG-HGVAVIN   46 (47)
T ss_pred             CEEEEeCCCCC-------ceeeeEEEECCCCC--eEccCCCCCCcccc-ceEEEeC
Confidence            58999998653       35789999999999  99999999999998 6777653

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=98.65  E-value=8.5e-09  Score=93.05  Aligned_cols=219  Identities=11%  Similarity=0.096  Sum_probs=137.5

Q ss_pred             CceEEEEEeC----CCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCC--EEEEEcCcCCCCCCCCCCCCCccccc
Q 021080           55 ENLLCVCAFD----PENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAG--KLFVLGGGSDAVDPLTGDQDGSFATN  128 (317)
Q Consensus        55 ~~~l~v~gg~----~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~  128 (317)
                      .+.+|+.||-    ...++|.|+...+.|..+..-...|..|..|-++....  ++|+.|-+-+...           .+
T Consensus       272 ~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~-----------r~  340 (723)
T KOG2437|consen  272 TECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSV-----------RN  340 (723)
T ss_pred             CcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccccc-----------cc
Confidence            5689999993    37899999999999998754333334598898887765  8999998754310           00


Q ss_pred             ceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCC------CCCccCCCceEEEEECCE--EEEEec--------Ccee
Q 021080          129 EVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIP------DLHRTHNSACTGVVIGGK--VHVLHK--------GLST  192 (317)
Q Consensus       129 ~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~------~~p~~~r~~~~~~~~~g~--lyv~gG--------~~~~  192 (317)
                                    ....-++.|+||..+++|.-+.      .=|.. .+.|+.++...+  |||+||        ...-
T Consensus       341 --------------~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~-vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~G  405 (723)
T KOG2437|consen  341 --------------SKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKL-VFDHQMCVDSEKHMIYVFGGRILTCNEPQFSG  405 (723)
T ss_pred             --------------ccccccceEEEecCCceeEEecccccccCCcce-eecceeeEecCcceEEEecCeeccCCCccccc
Confidence                          0112478999999999999773      23555 778888888877  999999        2346


Q ss_pred             EEEEeCCCCcEEeccCCcc-C------------C--cEEEEcCeEEEEeCc-------EEEEecC--CceEEEecccc--
Q 021080          193 VQVLDHMGLGWTVEDYGWL-Q------------G--PMAIVHDSVYLMSHG-------LIIKQHR--DVRKVVASASE--  246 (317)
Q Consensus       193 v~~yd~~~~~W~~~~~~~~-~------------~--~~~~~~~~ly~~g~~-------~~~~yd~--~~W~~v~~~~~--  246 (317)
                      ++.||.+...|........ .            +  -++.-++.+|++||+       ..+.|+.  +.=..++....  
T Consensus       406 LYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~~~s~~~k~d  485 (723)
T KOG2437|consen  406 LYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVDIISDGTKKD  485 (723)
T ss_pred             eEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccchhhhccCcCc
Confidence            8999999999986653221 1            1  122235678999872       2334432  22111111000  


Q ss_pred             --c-cccccE--EE-EEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccC
Q 021080          247 --F-RRRIGF--AM-IGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM  302 (317)
Q Consensus       247 --~-~~r~~~--~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~  302 (317)
                        . ..++..  ++ -.-..+|.+.-|+....... +....+..|+|+..++  .|.-+..+
T Consensus       486 sS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~-e~~~rns~wi~~i~~~--~w~cI~~I  544 (723)
T KOG2437|consen  486 SSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKR-EENVRNSFWIYDIVRN--SWSCIYKI  544 (723)
T ss_pred             cccCCCcchhhhcccCCCCcchhhhcccchhccCc-cccccCcEEEEEeccc--chhhHhhh
Confidence              0 011111  11 11245788888876543211 1236778999999998  99766443

>PLN02772 guanylate kinase

Probab=98.37  E-value=3.2e-06  Score=76.36  Aligned_cols=80  Identities=16%  Similarity=0.228  Sum_probs=62.9

Q ss_pred             ccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeC---CCCC
Q 021080           91 HLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI---PDLH  167 (317)
Q Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~---~~~p  167 (317)
                      ++..++++++++++||+||.++.                              ....+.+++||..|++|..-   +..|
T Consensus        24 ~~~~~tav~igdk~yv~GG~~d~------------------------------~~~~~~v~i~D~~t~~W~~P~V~G~~P   73 (398)
T PLN02772         24 PKNRETSVTIGDKTYVIGGNHEG------------------------------NTLSIGVQILDKITNNWVSPIVLGTGP   73 (398)
T ss_pred             CCCcceeEEECCEEEEEcccCCC------------------------------ccccceEEEEECCCCcEecccccCCCC
Confidence            47889999999999999997642                              22357899999999999865   5778


Q ss_pred             ccCCCceEEEEE-CCEEEEEec---CceeEEEEeCCCC
Q 021080          168 RTHNSACTGVVI-GGKVHVLHK---GLSTVQVLDHMGL  201 (317)
Q Consensus       168 ~~~r~~~~~~~~-~g~lyv~gG---~~~~v~~yd~~~~  201 (317)
                      .+ |.+|+++++ +++|+|+++   ...++|.+...|.
T Consensus        74 ~~-r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~~t~  110 (398)
T PLN02772         74 KP-CKGYSAVVLNKDRILVIKKGSAPDDSIWFLEVDTP  110 (398)
T ss_pred             CC-CCcceEEEECCceEEEEeCCCCCccceEEEEcCCH
Confidence            88 999999987 679999987   3355666655443

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.34  E-value=3.9e-07  Score=57.05  Aligned_cols=43  Identities=28%  Similarity=0.456  Sum_probs=36.7

Q ss_pred             CCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhHHH
Q 021080            5 IEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKA   47 (317)
Q Consensus         5 ~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~~~   47 (317)
                      |..||+|++.+||+.++..++.+++.|||+|+.++.++.+.+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~   43 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR   43 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence            5789999999999999999999999999999999988765543

>PF13854 Kelch_5: Kelch motif

Probab=98.17  E-value=4.5e-06  Score=50.79  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             ccCCeeEEEeCCEEEEEcCcCC
Q 021080           91 HLAHFGVVSTAGKLFVLGGGSD  112 (317)
Q Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~  112 (317)
                      +|.+|++++++++|||+||...
T Consensus         4 ~R~~hs~~~~~~~iyi~GG~~~   25 (42)
T PF13854_consen    4 PRYGHSAVVVGNNIYIFGGYSG   25 (42)
T ss_pred             CccceEEEEECCEEEEEcCccC
Confidence            5999999999999999999873

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.15  E-value=4.5e-05  Score=64.92  Aligned_cols=142  Identities=13%  Similarity=0.142  Sum_probs=88.6

Q ss_pred             ceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCC
Q 021080           68 LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSI  147 (317)
Q Consensus        68 ~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~  147 (317)
                      .-..||+.+++++.+...-..  .+++++ ..-+|+++++||..+.                                 .
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~--FCSgg~-~L~dG~ll~tGG~~~G---------------------------------~   90 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDT--FCSGGA-FLPDGRLLQTGGDNDG---------------------------------N   90 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCC--cccCcC-CCCCCCEEEeCCCCcc---------------------------------c
Confidence            346899999999988543332  233333 3457899999997531                                 2


Q ss_pred             ceeEEeeCCC----CceeeCC-CCCccCCCceEEEE-ECCEEEEEecCceeEEEEeCC-CC-----cEEeccCC------
Q 021080          148 SQAEMYDPEK----DVWVPIP-DLHRTHNSACTGVV-IGGKVHVLHKGLSTVQVLDHM-GL-----GWTVEDYG------  209 (317)
Q Consensus       148 ~~~~~yd~~t----~~W~~~~-~~p~~~r~~~~~~~-~~g~lyv~gG~~~~v~~yd~~-~~-----~W~~~~~~------  209 (317)
                      +.+..|++.+    ..|.+.+ .|..+ |..++++. -||+++|+||..+..+.|-+. ..     .|..+...      
T Consensus        91 ~~ir~~~p~~~~~~~~w~e~~~~m~~~-RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~  169 (243)
T PF07250_consen   91 KAIRIFTPCTSDGTCDWTESPNDMQSG-RWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPN  169 (243)
T ss_pred             cceEEEecCCCCCCCCceECcccccCC-CccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCcc
Confidence            3444555544    6798875 58888 87777664 589999999944433344343 21     12222211      


Q ss_pred             -ccCCcEEEEcCeEEEEeCcEEEEecCCc---eEEEecccc
Q 021080          210 -WLQGPMAIVHDSVYLMSHGLIIKQHRDV---RKVVASASE  246 (317)
Q Consensus       210 -~~~~~~~~~~~~ly~~g~~~~~~yd~~~---W~~v~~~~~  246 (317)
                       ..+.....-+|+||++....-..||.++   .+.++.+|.
T Consensus       170 nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg  210 (243)
T PF07250_consen  170 NLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPG  210 (243)
T ss_pred             ccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCC
Confidence             1133334458999999986666666554   478888885

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF13854 Kelch_5: Kelch motif

Probab=98.13  E-value=6.2e-06  Score=50.17  Aligned_cols=38  Identities=29%  Similarity=0.573  Sum_probs=33.0

Q ss_pred             cccccEEEEEECCeEEEEeCccc-CCCCceecccCcceeEeecCC
Q 021080          248 RRRIGFAMIGMGDDIYVIGGVIG-PDRWNWDIKPMSDVDVLTVGA  291 (317)
Q Consensus       248 ~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~~~~v~~yd~~~  291 (317)
                      .+|.+|+++.++++||++||... ..      ...+++|+||+.+
T Consensus         3 ~~R~~hs~~~~~~~iyi~GG~~~~~~------~~~~d~~~l~l~s   41 (42)
T PF13854_consen    3 SPRYGHSAVVVGNNIYIFGGYSGNNN------SYSNDLYVLDLPS   41 (42)
T ss_pred             CCccceEEEEECCEEEEEcCccCCCC------CEECcEEEEECCC
Confidence            67999999999999999999985 32      5789999999875

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.08  E-value=0.00022  Score=60.73  Aligned_cols=140  Identities=11%  Similarity=0.171  Sum_probs=89.6

Q ss_pred             CceeEEeeCCCCceeeCCCCCccCCCceE--EEEECCEEEEEec---CceeEEEEeCCC----CcEEeccCC-cc---CC
Q 021080          147 ISQAEMYDPEKDVWVPIPDLHRTHNSACT--GVVIGGKVHVLHK---GLSTVQVLDHMG----LGWTVEDYG-WL---QG  213 (317)
Q Consensus       147 ~~~~~~yd~~t~~W~~~~~~p~~~r~~~~--~~~~~g~lyv~gG---~~~~v~~yd~~~----~~W~~~~~~-~~---~~  213 (317)
                      ......||+.+++++.+.-.-..   .|+  +..-||++.+.||   ....+..|++.+    ..|.+.... ..   .+
T Consensus        45 ~a~s~~yD~~tn~~rpl~v~td~---FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp  121 (243)
T PF07250_consen   45 PAHSVEYDPNTNTFRPLTVQTDT---FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP  121 (243)
T ss_pred             eEEEEEEecCCCcEEeccCCCCC---cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccc
Confidence            45677899999999987644332   333  3456899999999   456788898865    569877643 22   33


Q ss_pred             cEEE-EcCeEEEEeCcE--EEEecCCc--------eEEEecccc--ccccccEEEEEECCeEEEEeCcccCCCCceeccc
Q 021080          214 PMAI-VHDSVYLMSHGL--IIKQHRDV--------RKVVASASE--FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKP  280 (317)
Q Consensus       214 ~~~~-~~~~ly~~g~~~--~~~yd~~~--------W~~v~~~~~--~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~  280 (317)
                      ++.. -+|+++++||..  .+.|-++.        |..+.....  +..-+-+..+.=+|+||+++..            
T Consensus       122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~------------  189 (243)
T PF07250_consen  122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR------------  189 (243)
T ss_pred             cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC------------
Confidence            4443 489999999943  33443432        222222111  1122334444558999999874            


Q ss_pred             CcceeEeecCCCCCce-eecccCCCC
Q 021080          281 MSDVDVLTVGAERPTW-RQVSPMTRC  305 (317)
Q Consensus       281 ~~~v~~yd~~~~~~~W-~~~~~~p~~  305 (317)
                        .-.+||+.++  ++ +.++.+|..
T Consensus       190 --~s~i~d~~~n--~v~~~lP~lPg~  211 (243)
T PF07250_consen  190 --GSIIYDYKTN--TVVRTLPDLPGG  211 (243)
T ss_pred             --CcEEEeCCCC--eEEeeCCCCCCC
Confidence              2357999998  77 788888764

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.07  E-value=1.4e-06  Score=54.72  Aligned_cols=44  Identities=32%  Similarity=0.508  Sum_probs=36.9

Q ss_pred             CCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhHHHH
Q 021080            5 IEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKAR   48 (317)
Q Consensus         5 ~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~~~~   48 (317)
                      |..||+|++.+|+.+++..++.+++.|||+|+.++.++.+....
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            56899999999999999999999999999999999998766543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=98.02  E-value=0.0015  Score=59.08  Aligned_cols=37  Identities=19%  Similarity=0.350  Sum_probs=33.5

Q ss_pred             CCCCcHHHHHHHhccCC-CCchhhhhhcCHhHHHhhcC
Q 021080            5 IEGLPDAVALRCLARVP-FFLHPKLELVSRSWRAAIRS   41 (317)
Q Consensus         5 ~~~Lp~d~~~~~l~r~p-~~~~~~~~~v~k~w~~l~~s   41 (317)
                      |+.||+||+..|..|+| ..++.+++.||++||..+..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            78999999999999995 77889999999999997664

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.98  E-value=4.3e-06  Score=50.45  Aligned_cols=38  Identities=34%  Similarity=0.559  Sum_probs=35.5

Q ss_pred             CcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhH
Q 021080            8 LPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELF   45 (317)
Q Consensus         8 Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~   45 (317)
                      ||+|++.+|+.+++..++.+++.|||+|+.++.++++.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~   38 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW   38 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence            79999999999999999999999999999999887654

>PLN02772 guanylate kinase

Probab=97.96  E-value=5.5e-05  Score=68.46  Aligned_cols=80  Identities=25%  Similarity=0.306  Sum_probs=60.6

Q ss_pred             cCCCceEEEEECCEEEEEec------CceeEEEEeCCCCcEEeccCCccCCcEEEEcCeEEEEeCcEEEEecCCceEEEe
Q 021080          169 THNSACTGVVIGGKVHVLHK------GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVA  242 (317)
Q Consensus       169 ~~r~~~~~~~~~g~lyv~gG------~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ly~~g~~~~~~yd~~~W~~v~  242 (317)
                      + +..++++.+++++||+||      ..+.+++||+.+++|....-.                                +
T Consensus        24 ~-~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~--------------------------------G   70 (398)
T PLN02772         24 P-KNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVL--------------------------------G   70 (398)
T ss_pred             C-CCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEeccccc--------------------------------C
Confidence            5 677899999999999999      346899999999999976521                                2


Q ss_pred             ccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          243 SASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       243 ~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ..|  .+|.+|+++.+ +++|+||++-...+         +++|...+.+.
T Consensus        71 ~~P--~~r~GhSa~v~~~~rilv~~~~~~~~---------~~~w~l~~~t~  110 (398)
T PLN02772         71 TGP--KPCKGYSAVVLNKDRILVIKKGSAPD---------DSIWFLEVDTP  110 (398)
T ss_pred             CCC--CCCCcceEEEECCceEEEEeCCCCCc---------cceEEEEcCCH
Confidence            223  57888888888 68999998654442         36777666653

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=97.87  E-value=0.0014  Score=55.83  Aligned_cols=146  Identities=12%  Similarity=0.106  Sum_probs=90.9

Q ss_pred             ceeEEeeCCCCceeeCCCCCccC--CCc-eEEEEECC-----EEEEEec-----CceeEEEEeCCCCcEEeccCCcc---
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTH--NSA-CTGVVIGG-----KVHVLHK-----GLSTVQVLDHMGLGWTVEDYGWL---  211 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~--r~~-~~~~~~~g-----~lyv~gG-----~~~~v~~yd~~~~~W~~~~~~~~---  211 (317)
                      ..+.++||.|++|..+|+.+.+.  ... ..+..++.     |+..+..     ....+++|+..+++|+.+...+.   
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~   93 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP   93 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence            56889999999999997654420  111 12233332     4444432     23578999999999999874333   


Q ss_pred             -CCcEEEEcCeEEEEeC-------cEEEEecCCc--eEEEeccccccc--cccEEEEEECCeEEEEeCcccCCCCceecc
Q 021080          212 -QGPMAIVHDSVYLMSH-------GLIIKQHRDV--RKVVASASEFRR--RIGFAMIGMGDDIYVIGGVIGPDRWNWDIK  279 (317)
Q Consensus       212 -~~~~~~~~~~ly~~g~-------~~~~~yd~~~--W~~v~~~~~~~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~  279 (317)
                       ....+.++|.+|-+..       ..+..||.++  |++.-++|....  .....++.++|+|.++.......       
T Consensus        94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-------  166 (230)
T TIGR01640        94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTN-------  166 (230)
T ss_pred             ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCC-------
Confidence             2236678999988853       1688999776  986334443111  22456788899999877643221       


Q ss_pred             cCcceeEee-cCCCCCceeecccCC
Q 021080          280 PMSDVDVLT-VGAERPTWRQVSPMT  303 (317)
Q Consensus       280 ~~~~v~~yd-~~~~~~~W~~~~~~p  303 (317)
                       .-+||+.+ ....  +|+.+-.++
T Consensus       167 -~~~IWvl~d~~~~--~W~k~~~i~  188 (230)
T TIGR01640       167 -NFDLWVLNDAGKQ--EWSKLFTVP  188 (230)
T ss_pred             -cEEEEEECCCCCC--ceeEEEEEc
Confidence             13667665 3244  798764443

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.85  E-value=0.0051  Score=56.89  Aligned_cols=144  Identities=17%  Similarity=0.145  Sum_probs=85.0

Q ss_pred             cCceEEEEEeCCCCceEEEeCCCC--CEee-cCCCCcc----ccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCccc
Q 021080           54 SENLLCVCAFDPENLWQLYDPLRD--LWIT-LPVLPSK----IRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFA  126 (317)
Q Consensus        54 ~~~~l~v~gg~~~~~~~~yd~~~~--~W~~-~~~~p~~----~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~  126 (317)
                      .++.||+...  ...++++|..++  .|+. +..-...    ...+...+.++.+++||+.+..                
T Consensus        68 ~~~~vy~~~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~----------------  129 (394)
T PRK11138         68 AYNKVYAADR--AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK----------------  129 (394)
T ss_pred             ECCEEEEECC--CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCC----------------
Confidence            4778888764  347899999876  4874 2221000    0012223456778899875431                


Q ss_pred             ccceeEecccCCCCCCCcCCCceeEEeeCCCC--ceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc--
Q 021080          127 TNEVWSYDPVTRGFTSCRKSISQAEMYDPEKD--VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG--  202 (317)
Q Consensus       127 ~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--  202 (317)
                                           ..+.++|.++.  .|+.-.+  ..  ...+.++.++++|+..+ ...+..+|+.+++  
T Consensus       130 ---------------------g~l~ald~~tG~~~W~~~~~--~~--~~ssP~v~~~~v~v~~~-~g~l~ald~~tG~~~  183 (394)
T PRK11138        130 ---------------------GQVYALNAEDGEVAWQTKVA--GE--ALSRPVVSDGLVLVHTS-NGMLQALNESDGAVK  183 (394)
T ss_pred             ---------------------CEEEEEECCCCCCcccccCC--Cc--eecCCEEECCEEEEECC-CCEEEEEEccCCCEe
Confidence                                 24556666554  4764321  11  12234567889888654 4579999998876  


Q ss_pred             EEeccCCcc-----CCcEEEEcCeEEEEeC-cEEEEecCCc----eEEE
Q 021080          203 WTVEDYGWL-----QGPMAIVHDSVYLMSH-GLIIKQHRDV----RKVV  241 (317)
Q Consensus       203 W~~~~~~~~-----~~~~~~~~~~ly~~g~-~~~~~yd~~~----W~~v  241 (317)
                      |+.-...+.     ..+-++.++.+|+... +.++.+|.++    |+.-
T Consensus       184 W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~  232 (394)
T PRK11138        184 WTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQR  232 (394)
T ss_pred             eeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheec
Confidence            886543221     1223445777777654 6788888765    9753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.73  E-value=0.0025  Score=58.93  Aligned_cols=110  Identities=17%  Similarity=0.141  Sum_probs=70.3

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCccCCcEEEEcCeEEEEeC-cEEEEecCCc----eEEEeccccc
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQGPMAIVHDSVYLMSH-GLIIKQHRDV----RKVVASASEF  247 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~ly~~g~-~~~~~yd~~~----W~~v~~~~~~  247 (317)
                      ..++.++++|+.+. ...+.++|.++++  |+.........+.++.++.+|+..+ +.++.+|.++    |+.-...|..
T Consensus       115 ~~~v~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~  193 (394)
T PRK11138        115 GVTVAGGKVYIGSE-KGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL  193 (394)
T ss_pred             ccEEECCEEEEEcC-CCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence            45678899997543 5679999987764  9865433223334556888888765 6899999865    9886544321


Q ss_pred             cccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080          248 RRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       248 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~  298 (317)
                      ..+...+-+..++.+|+..+             ...+..+|.++++..|+.
T Consensus       194 ~~~~~~sP~v~~~~v~~~~~-------------~g~v~a~d~~~G~~~W~~  231 (394)
T PRK11138        194 TLRGESAPATAFGGAIVGGD-------------NGRVSAVLMEQGQLIWQQ  231 (394)
T ss_pred             cccCCCCCEEECCEEEEEcC-------------CCEEEEEEccCChhhhee
Confidence            12222233445677776433             125677888888777874

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.69  E-value=0.01  Score=50.41  Aligned_cols=180  Identities=17%  Similarity=0.170  Sum_probs=107.3

Q ss_pred             cCceEEEEEeCCCCceEEEeCCCCC--EeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCccccccee
Q 021080           54 SENLLCVCAFDPENLWQLYDPLRDL--WITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW  131 (317)
Q Consensus        54 ~~~~l~v~gg~~~~~~~~yd~~~~~--W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~  131 (317)
                      .++.+|+..  ....++++|..+++  |+.-.  +.    ......+..++.||+....                     
T Consensus        35 ~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~~--~~----~~~~~~~~~~~~v~v~~~~---------------------   85 (238)
T PF13360_consen   35 DGGRVYVAS--GDGNLYALDAKTGKVLWRFDL--PG----PISGAPVVDGGRVYVGTSD---------------------   85 (238)
T ss_dssp             ETTEEEEEE--TTSEEEEEETTTSEEEEEEEC--SS----CGGSGEEEETTEEEEEETT---------------------
T ss_pred             eCCEEEEEc--CCCEEEEEECCCCCEEEEeec--cc----cccceeeecccccccccce---------------------
Confidence            366777774  35799999998875  65532  32    1222247888999888732                     


Q ss_pred             EecccCCCCCCCcCCCceeEEeeCCCC--cee-eCCCCCcc-CCCceEEEEECCEEEEEecCceeEEEEeCCCCc--EEe
Q 021080          132 SYDPVTRGFTSCRKSISQAEMYDPEKD--VWV-PIPDLHRT-HNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTV  205 (317)
Q Consensus       132 ~~d~~~~G~~~~~~~~~~~~~yd~~t~--~W~-~~~~~p~~-~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~  205 (317)
                                      ..+..+|.++.  .|+ .....+.. .......++.++.+|+... ...+.++|+.+++  |..
T Consensus        86 ----------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen   86 ----------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKY  148 (238)
T ss_dssp             ----------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEE
T ss_pred             ----------------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEe
Confidence                            24556665555  587 44332222 1233345556778877754 5679999998875  776


Q ss_pred             ccCCcc-----------CCcEEEEcCeEEEEeC-cEEEEecCCc----eEEEeccccccccccEEEEEECCeEEEEeCcc
Q 021080          206 EDYGWL-----------QGPMAIVHDSVYLMSH-GLIIKQHRDV----RKVVASASEFRRRIGFAMIGMGDDIYVIGGVI  269 (317)
Q Consensus       206 ~~~~~~-----------~~~~~~~~~~ly~~g~-~~~~~yd~~~----W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~  269 (317)
                      .-..+.           .......++.+|+... +.+..+|.++    |+..  ..   . ........++.||+...  
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~---~-~~~~~~~~~~~l~~~~~--  220 (238)
T PF13360_consen  149 PVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--IS---G-IYSLPSVDGGTLYVTSS--  220 (238)
T ss_dssp             ESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-----ECECEECCCTEEEEEET--
T ss_pred             ecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CC---C-ccCCceeeCCEEEEEeC--
Confidence            443322           0122233678898886 3356567665    8432  22   1 11124556788887761  


Q ss_pred             cCCCCceecccCcceeEeecCCCCCceee
Q 021080          270 GPDRWNWDIKPMSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       270 ~~~~~~~~~~~~~~v~~yd~~~~~~~W~~  298 (317)
                      .           ..+.++|+++++..|+.
T Consensus       221 ~-----------~~l~~~d~~tG~~~W~~  238 (238)
T PF13360_consen  221 D-----------GRLYALDLKTGKVVWQQ  238 (238)
T ss_dssp             T-----------TEEEEEETTTTEEEEEE
T ss_pred             C-----------CEEEEEECCCCCEEeEC
Confidence            1           27899999999777863

...

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.64  E-value=0.00039  Score=60.72  Aligned_cols=43  Identities=26%  Similarity=0.459  Sum_probs=38.6

Q ss_pred             CcCCCCc----HHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhH
Q 021080            3 ELIEGLP----DAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELF   45 (317)
Q Consensus         3 ~~~~~Lp----~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~   45 (317)
                      +++.-||    +++++.||+-+...+++....|||.|+.+++.+-+-
T Consensus        73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~W  119 (499)
T KOG0281|consen   73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLW  119 (499)
T ss_pred             HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHH
Confidence            3566789    999999999999999999999999999999988653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.55  E-value=0.018  Score=48.89  Aligned_cols=138  Identities=18%  Similarity=0.192  Sum_probs=86.7

Q ss_pred             eeEEeeCCCC--ceeeCCCCCccCCCceE--EEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCccCCcEEEEcCeE
Q 021080          149 QAEMYDPEKD--VWVPIPDLHRTHNSACT--GVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQGPMAIVHDSV  222 (317)
Q Consensus       149 ~~~~yd~~t~--~W~~~~~~p~~~r~~~~--~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~l  222 (317)
                      .+.++|+.++  .|+.-  +... .....  .+..++.+|+..+ ...+.++|..+++  |+.-.+..........++.+
T Consensus         4 ~l~~~d~~tG~~~W~~~--~~~~-~~~~~~~~~~~~~~v~~~~~-~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v   79 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYD--LGPG-IGGPVATAVPDGGRVYVASG-DGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV   79 (238)
T ss_dssp             EEEEEETTTTEEEEEEE--CSSS-CSSEEETEEEETTEEEEEET-TSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred             EEEEEECCCCCEEEEEE--CCCC-CCCccceEEEeCCEEEEEcC-CCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence            4556776665  37652  1111 22222  4558999999855 6789999997775  88665433333447789999


Q ss_pred             EEEeC-cEEEEecCCc----eE-EEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCce
Q 021080          223 YLMSH-GLIIKQHRDV----RK-VVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTW  296 (317)
Q Consensus       223 y~~g~-~~~~~yd~~~----W~-~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W  296 (317)
                      |+... +.++.+|.++    |+ .....+.............++.+|+...             ...+..+|++++...|
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~g~l~~~d~~tG~~~w  146 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------------SGKLVALDPKTGKLLW  146 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-------------CSEEEEEETTTTEEEE
T ss_pred             ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-------------cCcEEEEecCCCcEEE
Confidence            98874 6899999655    99 4544332122233344555777777654             1378899999887778


Q ss_pred             eecccCC
Q 021080          297 RQVSPMT  303 (317)
Q Consensus       297 ~~~~~~p  303 (317)
                      +.-...|
T Consensus       147 ~~~~~~~  153 (238)
T PF13360_consen  147 KYPVGEP  153 (238)
T ss_dssp             EEESSTT
T ss_pred             EeecCCC
Confidence            7754443

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.49  E-value=0.039  Score=50.63  Aligned_cols=138  Identities=16%  Similarity=0.128  Sum_probs=80.0

Q ss_pred             cCceEEEEEeCCCCceEEEeCCCCC--EeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCccccccee
Q 021080           54 SENLLCVCAFDPENLWQLYDPLRDL--WITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW  131 (317)
Q Consensus        54 ~~~~l~v~gg~~~~~~~~yd~~~~~--W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~  131 (317)
                      .++.+|+...  ...++++|..+++  |+.-  ++.    ....+.++.++.+|+.+..                     
T Consensus        64 ~~~~v~v~~~--~g~v~a~d~~tG~~~W~~~--~~~----~~~~~p~v~~~~v~v~~~~---------------------  114 (377)
T TIGR03300        64 AGGKVYAADA--DGTVVALDAETGKRLWRVD--LDE----RLSGGVGADGGLVFVGTEK---------------------  114 (377)
T ss_pred             ECCEEEEECC--CCeEEEEEccCCcEeeeec--CCC----CcccceEEcCCEEEEEcCC---------------------
Confidence            3667777654  2579999988765  8642  222    1112345567788865431                     


Q ss_pred             EecccCCCCCCCcCCCceeEEeeCCCC--ceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc--EEecc
Q 021080          132 SYDPVTRGFTSCRKSISQAEMYDPEKD--VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVED  207 (317)
Q Consensus       132 ~~d~~~~G~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~  207 (317)
                                      ..++.+|..+.  .|+.-.  +..  .....++.++++|+..+ ...+.++|+.+++  |+...
T Consensus       115 ----------------g~l~ald~~tG~~~W~~~~--~~~--~~~~p~v~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       115 ----------------GEVIALDAEDGKELWRAKL--SSE--VLSPPLVANGLVVVRTN-DGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             ----------------CEEEEEECCCCcEeeeecc--Cce--eecCCEEECCEEEEECC-CCeEEEEEcCCCceeeEEcc
Confidence                            24555665554  476432  111  12234456788887654 4569999998764  87543


Q ss_pred             CCcc-----CCcEEEEcCeEEEEeC-cEEEEecCCc----eEEE
Q 021080          208 YGWL-----QGPMAIVHDSVYLMSH-GLIIKQHRDV----RKVV  241 (317)
Q Consensus       208 ~~~~-----~~~~~~~~~~ly~~g~-~~~~~yd~~~----W~~v  241 (317)
                      ....     ..+.+..++.+|+... +.++.+|+++    |+.-
T Consensus       174 ~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~  217 (377)
T TIGR03300       174 VTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQR  217 (377)
T ss_pred             CCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence            2211     1233456777665543 7899998754    8753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.13  E-value=0.041  Score=50.47  Aligned_cols=132  Identities=17%  Similarity=0.155  Sum_probs=74.5

Q ss_pred             eeEEeeCCCC--ceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCccCCcEEEEcCeEEE
Q 021080          149 QAEMYDPEKD--VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQGPMAIVHDSVYL  224 (317)
Q Consensus       149 ~~~~yd~~t~--~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~ly~  224 (317)
                      .+++||..++  .|+.--.-  .  ...+.++.++++|+.+. ...++++|..+++  |+.........+.+..++.+|+
T Consensus        76 ~v~a~d~~tG~~~W~~~~~~--~--~~~~p~v~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v  150 (377)
T TIGR03300        76 TVVALDAETGKRLWRVDLDE--R--LSGGVGADGGLVFVGTE-KGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVV  150 (377)
T ss_pred             eEEEEEccCCcEeeeecCCC--C--cccceEEcCCEEEEEcC-CCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEE
Confidence            3555665544  47533211  1  11234456788886543 5679999987664  8755332222233446788887


Q ss_pred             EeC-cEEEEecCCc----eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080          225 MSH-GLIIKQHRDV----RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       225 ~g~-~~~~~yd~~~----W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~  298 (317)
                      ... +.++.+|.++    |+.-...+....+.....+..++.+|+ |..            ...+..+|+++++..|+.
T Consensus       151 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~------------~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       151 RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA------------GGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC------------CCEEEEEEccCCCEeeee
Confidence            654 7899999764    986543332111222334455666554 321            126778888887667864

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.86  E-value=0.052  Score=49.15  Aligned_cols=95  Identities=13%  Similarity=0.155  Sum_probs=66.8

Q ss_pred             eEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecC------------ceeEEEEeC--------CCCcEEeccCC
Q 021080          150 AEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKG------------LSTVQVLDH--------MGLGWTVEDYG  209 (317)
Q Consensus       150 ~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~------------~~~v~~yd~--------~~~~W~~~~~~  209 (317)
                      ..+||.++..=...|.|+.+ .....++.++++||++...            .-++..|++        ....|+.++++
T Consensus        88 t~vyDt~t~av~~~P~l~~p-k~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P  166 (342)
T PF07893_consen   88 TLVYDTDTRAVATGPRLHSP-KRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP  166 (342)
T ss_pred             eEEEECCCCeEeccCCCCCC-CcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence            66899999998888998888 6666788889999999871            222344442        23358888764


Q ss_pred             cc---C-------CcEEEE-cCeEEEE-eCc--EEEEecCCc--eEEEeccc
Q 021080          210 WL---Q-------GPMAIV-HDSVYLM-SHG--LIIKQHRDV--RKVVASAS  245 (317)
Q Consensus       210 ~~---~-------~~~~~~-~~~ly~~-g~~--~~~~yd~~~--W~~v~~~~  245 (317)
                      +.   .       .+.+++ +..||+- .+.  ..+.||+++  |++++...
T Consensus       167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~  218 (342)
T PF07893_consen  167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWM  218 (342)
T ss_pred             CccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeecccee
Confidence            43   1       134566 5678873 444  799999987  99998654

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.76  E-value=0.051  Score=49.25  Aligned_cols=124  Identities=16%  Similarity=0.099  Sum_probs=74.9

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEec
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD  134 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d  134 (317)
                      ++.|+.....  .....||..+..-...|.++.+   ...-.++.++++||+.........           ...     
T Consensus        76 gskIv~~d~~--~~t~vyDt~t~av~~~P~l~~p---k~~pisv~VG~~LY~m~~~~~~~~-----------~~~-----  134 (342)
T PF07893_consen   76 GSKIVAVDQS--GRTLVYDTDTRAVATGPRLHSP---KRCPISVSVGDKLYAMDRSPFPEP-----------AGR-----  134 (342)
T ss_pred             CCeEEEEcCC--CCeEEEECCCCeEeccCCCCCC---CcceEEEEeCCeEEEeeccCcccc-----------ccC-----
Confidence            5555555433  5689999999998888887764   333355667888999998643210           000     


Q ss_pred             ccCCCCCCCcCCCceeEEee--------CCCCceeeCCCCCccCCC-------ceEEEEE-CCEEEEE-ecCceeEEEEe
Q 021080          135 PVTRGFTSCRKSISQAEMYD--------PEKDVWVPIPDLHRTHNS-------ACTGVVI-GGKVHVL-HKGLSTVQVLD  197 (317)
Q Consensus       135 ~~~~G~~~~~~~~~~~~~yd--------~~t~~W~~~~~~p~~~r~-------~~~~~~~-~g~lyv~-gG~~~~v~~yd  197 (317)
                              ......++..|+        ...-.|+.+|+.|-. ..       -.+-+++ +..|+|. .+.....++||
T Consensus       135 --------~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~-~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfD  205 (342)
T PF07893_consen  135 --------PDFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFV-RDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFD  205 (342)
T ss_pred             --------ccceeEEEeccccccccccCCCcceEEcCCCCCcc-ccCCcccceEEEEEEecCCeEEEEecCCceEEEEEE
Confidence                    000012222233        223378999876655 32       2334556 5678883 22223599999


Q ss_pred             CCCCcEEeccC
Q 021080          198 HMGLGWTVEDY  208 (317)
Q Consensus       198 ~~~~~W~~~~~  208 (317)
                      +.+.+|+....
T Consensus       206 t~~~~W~~~Gd  216 (342)
T PF07893_consen  206 TESHEWRKHGD  216 (342)
T ss_pred             cCCcceeeccc
Confidence            99999999864

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.54  E-value=0.37  Score=42.27  Aligned_cols=95  Identities=11%  Similarity=0.100  Sum_probs=64.3

Q ss_pred             CceeEEeeCCCCceeeCCCCCccCCCceEEEEE-CCEEEEEec------CceeEEEEeCCCCcEEeccCCc-----cCCc
Q 021080          147 ISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI-GGKVHVLHK------GLSTVQVLDHMGLGWTVEDYGW-----LQGP  214 (317)
Q Consensus       147 ~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~-~g~lyv~gG------~~~~v~~yd~~~~~W~~~~~~~-----~~~~  214 (317)
                      -..+..||..+.+|..+..--.+ . -.+.... +++||+.|.      ....+..||..+.+|+.++...     .+..
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G-~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISG-T-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceE-E-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence            46788899999999988654222 1 1223333 778888776      3567889999999998887632     1222


Q ss_pred             EEEE----cCeEEEEeC-----cEEEEecCCceEEEec
Q 021080          215 MAIV----HDSVYLMSH-----GLIIKQHRDVRKVVAS  243 (317)
Q Consensus       215 ~~~~----~~~ly~~g~-----~~~~~yd~~~W~~v~~  243 (317)
                      +.+.    .+.+++.|.     ..+..||-.+|+.+..
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~  130 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS  130 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence            2222    235675553     5788999999999886

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.52  E-value=0.094  Score=45.14  Aligned_cols=91  Identities=13%  Similarity=0.060  Sum_probs=68.9

Q ss_pred             EEE-ECCEEEEEec--CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC--cEEEEecCCceEEEeccccc
Q 021080          176 GVV-IGGKVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH--GLIIKQHRDVRKVVASASEF  247 (317)
Q Consensus       176 ~~~-~~g~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~  247 (317)
                      ..+ .+|.+|.-.|  ..+.+..||+.+++-....+++.   .-.++.++++||.+-.  +..+.||.++.+.+...+  
T Consensus        50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~--  127 (264)
T PF05096_consen   50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP--  127 (264)
T ss_dssp             EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE--
T ss_pred             EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe--
Confidence            344 6899999998  66789999999998654444443   3466788999999976  789999999999888887  


Q ss_pred             cccccEEEEEECCeEEEEeCc
Q 021080          248 RRRIGFAMIGMGDDIYVIGGV  268 (317)
Q Consensus       248 ~~r~~~~~~~~~~~lyv~GG~  268 (317)
                      ....+-+++..+..|++-.|.
T Consensus       128 y~~EGWGLt~dg~~Li~SDGS  148 (264)
T PF05096_consen  128 YPGEGWGLTSDGKRLIMSDGS  148 (264)
T ss_dssp             -SSS--EEEECSSCEEEE-SS
T ss_pred             cCCcceEEEcCCCEEEEECCc
Confidence            556777888888889988883

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=95.90  E-value=0.092  Score=45.21  Aligned_cols=92  Identities=15%  Similarity=0.140  Sum_probs=50.2

Q ss_pred             eCCCCCccCCCceEEEEE--CCE--EEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEEcCeEEEEeCcEEEEecCCc
Q 021080          162 PIPDLHRTHNSACTGVVI--GGK--VHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDV  237 (317)
Q Consensus       162 ~~~~~p~~~r~~~~~~~~--~g~--lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ly~~g~~~~~~yd~~~  237 (317)
                      .+++.|.+ |++|+.-++  .||  ..++||. .-+-.=.-.|+.|..+-.-++         .+|++        |.+-
T Consensus        80 LvGdvP~a-RYGHt~~vV~SrGKta~VlFGGR-SY~P~~qRTTenWNsVvDC~P---------~VfLi--------DleF  140 (337)
T PF03089_consen   80 LVGDVPEA-RYGHTINVVHSRGKTACVLFGGR-SYMPPGQRTTENWNSVVDCPP---------QVFLI--------DLEF  140 (337)
T ss_pred             ecCCCCcc-cccceEEEEEECCcEEEEEECCc-ccCCccccchhhcceeccCCC---------eEEEE--------eccc
Confidence            35889999 999976544  333  5566771 101111223566765533222         23333        3332


Q ss_pred             -eEEEecccccc-ccccEEEEEECCeEEEEeCcccCC
Q 021080          238 -RKVVASASEFR-RRIGFAMIGMGDDIYVIGGVIGPD  272 (317)
Q Consensus       238 -W~~v~~~~~~~-~r~~~~~~~~~~~lyv~GG~~~~~  272 (317)
                       -...-.+|+.+ +...|...+-+|.||++||+.-..
T Consensus       141 GC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~s  177 (337)
T PF03089_consen  141 GCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLES  177 (337)
T ss_pred             cccccccchhhcCCeEEEEEEecCceEEEEccEEccC
Confidence             22222334433 445566777799999999987554

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=95.85  E-value=1  Score=38.55  Aligned_cols=195  Identities=17%  Similarity=0.165  Sum_probs=105.1

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS  132 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  132 (317)
                      +..||+.- -....++.+|+.+++-..+ ..+.+      .+++..  ++.+|+....                      
T Consensus        11 ~g~l~~~D-~~~~~i~~~~~~~~~~~~~-~~~~~------~G~~~~~~~g~l~v~~~~----------------------   60 (246)
T PF08450_consen   11 DGRLYWVD-IPGGRIYRVDPDTGEVEVI-DLPGP------NGMAFDRPDGRLYVADSG----------------------   60 (246)
T ss_dssp             TTEEEEEE-TTTTEEEEEETTTTEEEEE-ESSSE------EEEEEECTTSEEEEEETT----------------------
T ss_pred             CCEEEEEE-cCCCEEEEEECCCCeEEEE-ecCCC------ceEEEEccCCEEEEEEcC----------------------
Confidence            34455442 2346889999988776543 22211      333333  6788887752                      


Q ss_pred             ecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCc---c-CCCceEEEEECCEEEEEec------Cc--eeEEEEeCCC
Q 021080          133 YDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHR---T-HNSACTGVVIGGKVHVLHK------GL--STVQVLDHMG  200 (317)
Q Consensus       133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~---~-~r~~~~~~~~~g~lyv~gG------~~--~~v~~yd~~~  200 (317)
                                      ...++|+.+++++.+...+.   + .+.+-.++--+|.||+..-      ..  ..++++++. 
T Consensus        61 ----------------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-  123 (246)
T PF08450_consen   61 ----------------GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-  123 (246)
T ss_dssp             ----------------CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-
T ss_pred             ----------------ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-
Confidence                            23456888988887755421   1 0223334445788888643      11  579999999 


Q ss_pred             CcEEeccCCcc-CCcEEEE--cCeEEEEeC--cEEEEecCCc----eE---EEeccccccccccEEEEEE-CCeEEEEeC
Q 021080          201 LGWTVEDYGWL-QGPMAIV--HDSVYLMSH--GLIIKQHRDV----RK---VVASASEFRRRIGFAMIGM-GDDIYVIGG  267 (317)
Q Consensus       201 ~~W~~~~~~~~-~~~~~~~--~~~ly~~g~--~~~~~yd~~~----W~---~v~~~~~~~~r~~~~~~~~-~~~lyv~GG  267 (317)
                      .+.+.+..... +...+..  +..||+...  +.++.|+.+.    +.   .+...+... ...-+++.- +|.||+..-
T Consensus       124 ~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~l~va~~  202 (246)
T PF08450_consen  124 GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGNLWVADW  202 (246)
T ss_dssp             SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-EEEEEE
T ss_pred             CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCCEEEEEc
Confidence            55554432222 2334433  335888764  7899988642    33   222333211 112334443 688998622


Q ss_pred             cccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeE
Q 021080          268 VIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQ  314 (317)
Q Consensus       268 ~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~  314 (317)
                                  ....|.+||++..  .-..+ ++|.+  ...+||.
T Consensus       203 ------------~~~~I~~~~p~G~--~~~~i-~~p~~--~~t~~~f  232 (246)
T PF08450_consen  203 ------------GGGRIVVFDPDGK--LLREI-ELPVP--RPTNCAF  232 (246)
T ss_dssp             ------------TTTEEEEEETTSC--EEEEE-E-SSS--SEEEEEE
T ss_pred             ------------CCCEEEEECCCcc--EEEEE-cCCCC--CEEEEEE
Confidence                        1238999999954  44444 45644  3345554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=95.80  E-value=1.1  Score=38.74  Aligned_cols=90  Identities=9%  Similarity=0.023  Sum_probs=43.7

Q ss_pred             ceeEEeeCCCCceee-CCCCCccCCCceEEEEEC-CEEEEEecCceeEEEEeCCCCc-EEeccCCccCCcEEE-EcCeEE
Q 021080          148 SQAEMYDPEKDVWVP-IPDLHRTHNSACTGVVIG-GKVHVLHKGLSTVQVLDHMGLG-WTVEDYGWLQGPMAI-VHDSVY  223 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~-~~~~p~~~r~~~~~~~~~-g~lyv~gG~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~-~~~~ly  223 (317)
                      ..+.+||..+.+... ++.-..+   ...+..-+ +.+|+.++....+..||+.+.+ -..++.......++. -++.++
T Consensus        53 ~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l  129 (300)
T TIGR03866        53 DTIQVIDLATGEVIGTLPSGPDP---ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIV  129 (300)
T ss_pred             CeEEEEECCCCcEEEeccCCCCc---cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEE
Confidence            345667776665543 2221111   11122223 4577766545679999998754 222221111122222 255555


Q ss_pred             EEeC---cEEEEecCCceEE
Q 021080          224 LMSH---GLIIKQHRDVRKV  240 (317)
Q Consensus       224 ~~g~---~~~~~yd~~~W~~  240 (317)
                      +++.   ..+..||.++.+.
T Consensus       130 ~~~~~~~~~~~~~d~~~~~~  149 (300)
T TIGR03866       130 VNTSETTNMAHFIDTKTYEI  149 (300)
T ss_pred             EEEecCCCeEEEEeCCCCeE
Confidence            5543   3566778776433

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.80  E-value=0.2  Score=48.26  Aligned_cols=116  Identities=13%  Similarity=0.056  Sum_probs=72.1

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCcc-----------CCcEEEEcCeEEEEeC-cEEEEecCCc---
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWL-----------QGPMAIVHDSVYLMSH-GLIIKQHRDV---  237 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~-----------~~~~~~~~~~ly~~g~-~~~~~yd~~~---  237 (317)
                      +-++.+|+||+... ...++++|..+++  |+.-.....           ....+..++++|+... +.++++|.++   
T Consensus        64 tPvv~~g~vyv~s~-~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~  142 (527)
T TIGR03075        64 QPLVVDGVMYVTTS-YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKV  142 (527)
T ss_pred             CCEEECCEEEEECC-CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCE
Confidence            45678999999754 3469999998765  886543211           1234566788888654 7899999875   


Q ss_pred             -eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080          238 -RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       238 -W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~  298 (317)
                       |+.-..-.........+-+..+++||+-....+.+       ....+..||.++++..|+.
T Consensus       143 ~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~-------~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       143 VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFG-------VRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             EeecccccccccccccCCcEEECCEEEEeecccccC-------CCcEEEEEECCCCceeEec
Confidence             98643211100112223455688887753322111       2347889999999888974

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.79  E-value=0.53  Score=40.63  Aligned_cols=95  Identities=14%  Similarity=-0.083  Sum_probs=64.7

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCc---cCCcEEEEcCeEEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW---LQGPMAIVHDSVYL  224 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~---~~~~~~~~~~~ly~  224 (317)
                      +.+..||+.+++=....++|.. .++-..+.++++||.+.=.......||+.+-  +.+....   ..-..+.-+..+++
T Consensus        68 S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl--~~~~~~~y~~EGWGLt~dg~~Li~  144 (264)
T PF05096_consen   68 SSLRKVDLETGKVLQSVPLPPR-YFGEGITILGDKLYQLTWKEGTGFVYDPNTL--KKIGTFPYPGEGWGLTSDGKRLIM  144 (264)
T ss_dssp             EEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEEESSSSEEEEEETTTT--EEEEEEE-SSS--EEEECSSCEEE
T ss_pred             EEEEEEECCCCcEEEEEECCcc-ccceeEEEECCEEEEEEecCCeEEEEccccc--eEEEEEecCCcceEEEcCCCEEEE
Confidence            6788899999987777788877 7777788999999999876778899998753  3332221   13345556677888


Q ss_pred             EeC-cEEEEecCCceEEEeccc
Q 021080          225 MSH-GLIIKQHRDVRKVVASAS  245 (317)
Q Consensus       225 ~g~-~~~~~yd~~~W~~v~~~~  245 (317)
                      -+| +.++..||++.+.+..+.
T Consensus       145 SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen  145 SDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             E-SSSEEEEE-TTT-SEEEEEE
T ss_pred             ECCccceEEECCcccceEEEEE
Confidence            887 789999999866655544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.70  E-value=1.2  Score=42.60  Aligned_cols=122  Identities=16%  Similarity=0.076  Sum_probs=66.7

Q ss_pred             EEEC-CEEEEEecCceeEEEEeCCCCc--EEeccCCc------cCCcEEEEcCeEEEEe----------CcEEEEecCCc
Q 021080          177 VVIG-GKVHVLHKGLSTVQVLDHMGLG--WTVEDYGW------LQGPMAIVHDSVYLMS----------HGLIIKQHRDV  237 (317)
Q Consensus       177 ~~~~-g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~------~~~~~~~~~~~ly~~g----------~~~~~~yd~~~  237 (317)
                      ++.+ +++|+... ...+.++|..+++  |+......      ...+.++.++.+|+-.          .+.++.+|.++
T Consensus       106 ~~~~~~~V~v~~~-~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T  184 (488)
T cd00216         106 AYWDPRKVFFGTF-DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET  184 (488)
T ss_pred             EEccCCeEEEecC-CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC
Confidence            4556 88887543 5679999998765  88654332      1233345567776543          25789999865


Q ss_pred             ----eEEEeccccc--cc----------ccc----EEEEE--ECCeEEEEeCcccCCC--Cc---eecccCcceeEeecC
Q 021080          238 ----RKVVASASEF--RR----------RIG----FAMIG--MGDDIYVIGGVIGPDR--WN---WDIKPMSDVDVLTVG  290 (317)
Q Consensus       238 ----W~~v~~~~~~--~~----------r~~----~~~~~--~~~~lyv~GG~~~~~~--~~---~~~~~~~~v~~yd~~  290 (317)
                          |+.-...+.+  .+          +.+    ...+.  -++.||+-.|......  ..   .+....+.+..+|.+
T Consensus       185 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~  264 (488)
T cd00216         185 GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD  264 (488)
T ss_pred             CceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence                9764321110  00          000    01122  2467777654321100  00   000234579999999


Q ss_pred             CCCCceeec
Q 021080          291 AERPTWRQV  299 (317)
Q Consensus       291 ~~~~~W~~~  299 (317)
                      +++..|+.-
T Consensus       265 tG~~~W~~~  273 (488)
T cd00216         265 TGKVKWFYQ  273 (488)
T ss_pred             CCCEEEEee
Confidence            998899853

The alignment model contains an 8-bladed beta-propeller.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.0088  Score=51.97  Aligned_cols=40  Identities=18%  Similarity=0.147  Sum_probs=36.4

Q ss_pred             CCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhh
Q 021080            5 IEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPEL   44 (317)
Q Consensus         5 ~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~   44 (317)
                      |.+||||+++.|++.++.+.+.++..|||+|..+.++..+
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l  137 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL  137 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence            6789999999999999999999999999999998666544

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.00  E-value=0.44  Score=41.80  Aligned_cols=106  Identities=19%  Similarity=0.170  Sum_probs=66.4

Q ss_pred             CCceEEEeCCCCCEeecCCCCccccccCCeeEEEe-CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCc
Q 021080           66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCR  144 (317)
Q Consensus        66 ~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~  144 (317)
                      -..+-.||+...+|..+..--.   +.- ..+... +++||+.|..+-.                              .
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~---G~V-~~l~~~~~~~Llv~G~ft~~------------------------------~   60 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGIS---GTV-TDLQWASNNQLLVGGNFTLN------------------------------G   60 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCce---EEE-EEEEEecCCEEEEEEeeEEC------------------------------C
Confidence            4678889999999998764321   111 223333 7788888865421                              1


Q ss_pred             CCCceeEEeeCCCCceeeCCC-C----CccCCCceEEEEECC-EEEEEec---CceeEEEEeCCCCcEEeccC
Q 021080          145 KSISQAEMYDPEKDVWVPIPD-L----HRTHNSACTGVVIGG-KVHVLHK---GLSTVQVLDHMGLGWTVEDY  208 (317)
Q Consensus       145 ~~~~~~~~yd~~t~~W~~~~~-~----p~~~r~~~~~~~~~g-~lyv~gG---~~~~v~~yd~~~~~W~~~~~  208 (317)
                      .....+-.||..+++|..++. .    |.+ ...-.....++ .+++.|.   ....+..||  ..+|..+..
T Consensus        61 ~~~~~la~yd~~~~~w~~~~~~~s~~ipgp-v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~  130 (281)
T PF12768_consen   61 TNSSNLATYDFKNQTWSSLGGGSSNSIPGP-VTALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS  130 (281)
T ss_pred             CCceeEEEEecCCCeeeecCCcccccCCCc-EEEEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence            135678899999999998866 2    333 21111222233 5776665   455677885  568998875

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.64  E-value=3.8  Score=39.55  Aligned_cols=123  Identities=14%  Similarity=0.104  Sum_probs=70.3

Q ss_pred             EEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCc-----cCCcEEEEcCeEEEEeC-------cEEEEecCCc----
Q 021080          176 GVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGW-----LQGPMAIVHDSVYLMSH-------GLIIKQHRDV----  237 (317)
Q Consensus       176 ~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~-----~~~~~~~~~~~ly~~g~-------~~~~~yd~~~----  237 (317)
                      .++.+++||+... ...+.++|..+++  |+......     ...+-++.++++|+-..       +.++.||.++    
T Consensus       116 ~av~~~~v~v~t~-dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l  194 (527)
T TIGR03075       116 VALYDGKVFFGTL-DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV  194 (527)
T ss_pred             ceEECCEEEEEcC-CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence            4677889987543 4579999998876  87542111     12334556888887642       5799999876    


Q ss_pred             eEEEeccccc-----------------------cccccE---EEEEE---CCeEEEEeCcccC---CCCceecccCccee
Q 021080          238 RKVVASASEF-----------------------RRRIGF---AMIGM---GDDIYVIGGVIGP---DRWNWDIKPMSDVD  285 (317)
Q Consensus       238 W~~v~~~~~~-----------------------~~r~~~---~~~~~---~~~lyv~GG~~~~---~~~~~~~~~~~~v~  285 (317)
                      |+.-...+..                       ..+.+.   ...++   .+.||+=-|.-..   .....+-.+.+.+.
T Consensus       195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~v  274 (527)
T TIGR03075       195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIV  274 (527)
T ss_pred             EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEE
Confidence            8743211100                       011110   01233   3467765554111   00001114677899


Q ss_pred             EeecCCCCCceeec
Q 021080          286 VLTVGAERPTWRQV  299 (317)
Q Consensus       286 ~yd~~~~~~~W~~~  299 (317)
                      ..|++|++.+|.-.
T Consensus       275 Ald~~TG~~~W~~Q  288 (527)
T TIGR03075       275 ARDPDTGKIKWHYQ  288 (527)
T ss_pred             EEccccCCEEEeee
Confidence            99999998889754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=94.61  E-value=1.3  Score=40.70  Aligned_cols=145  Identities=9%  Similarity=-0.080  Sum_probs=82.4

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEec
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD  134 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d  134 (317)
                      .+.+.++|-+..-.++..|-+++.-  +..+.-.-.+........-|....+++|..                       
T Consensus       225 ~plllvaG~d~~lrifqvDGk~N~~--lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-----------------------  279 (514)
T KOG2055|consen  225 APLLLVAGLDGTLRIFQVDGKVNPK--LQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-----------------------  279 (514)
T ss_pred             CceEEEecCCCcEEEEEecCccChh--heeeeeccCccceeeecCCCceEEEecccc-----------------------
Confidence            5566666666666778888887763  222221100122222223333366677642                       


Q ss_pred             ccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCcc-C-CCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCccC
Q 021080          135 PVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRT-H-NSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ  212 (317)
Q Consensus       135 ~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-~-r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~  212 (317)
                                   .-++.||.++.+-.++.++..- . -...-.|..++.+.++-|...-|..+...|+.|-.--.+...
T Consensus       280 -------------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~  346 (514)
T KOG2055|consen  280 -------------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV  346 (514)
T ss_pred             -------------eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE
Confidence                         5678899999998888665321 0 111234567777777777666677777777776432222111


Q ss_pred             CcEEE--Ec-CeEEEEeC-cEEEEecCCc
Q 021080          213 GPMAI--VH-DSVYLMSH-GLIIKQHRDV  237 (317)
Q Consensus       213 ~~~~~--~~-~~ly~~g~-~~~~~yd~~~  237 (317)
                      ....+  .+ .+|++.++ +.||.+|..+
T Consensus       347 v~~~~fsSdsk~l~~~~~~GeV~v~nl~~  375 (514)
T KOG2055|consen  347 VSDFTFSSDSKELLASGGTGEVYVWNLRQ  375 (514)
T ss_pred             EeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence            11111  23 35666655 8999999876

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.57  E-value=0.024  Score=49.48  Aligned_cols=46  Identities=33%  Similarity=0.406  Sum_probs=39.9

Q ss_pred             CCCCcHHHHHHHhccCCC-----CchhhhhhcCHhHHHhhcChhhHHHHHh
Q 021080            5 IEGLPDAVALRCLARVPF-----FLHPKLELVSRSWRAAIRSPELFKARQE   50 (317)
Q Consensus         5 ~~~Lp~d~~~~~l~r~p~-----~~~~~~~~v~k~w~~l~~s~~~~~~~~~   50 (317)
                      |+.|||||+.+||.++-.     .++.++++|||.|.....+|++.+.-..
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~  157 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL  157 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence            467999999999998754     7889999999999999999999876554

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.51  E-value=4.6  Score=39.71  Aligned_cols=132  Identities=10%  Similarity=0.029  Sum_probs=83.0

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc-EEeccCCccCCcEE---EEcCeEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG-WTVEDYGWLQGPMA---IVHDSVY  223 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~-W~~~~~~~~~~~~~---~~~~~ly  223 (317)
                      -.+-+|+-.+++......-+.. +..+.+..-||.+.+.|+....|-+||..+.- ...........++.   ..++.++
T Consensus       330 gQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~ll  408 (893)
T KOG0291|consen  330 GQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLL  408 (893)
T ss_pred             ceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEE
Confidence            4566777666666655554555 55665666799999999977888888887753 22222221111111   1234444


Q ss_pred             EEe-CcEEEEecCCceEEEeccccccccccEEEEEEC--CeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          224 LMS-HGLIIKQHRDVRKVVASASEFRRRIGFAMIGMG--DDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       224 ~~g-~~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ... .+.+..+|.++.+....... ..|.++++++.+  |.|.+.|+.+..           +|++++.+++
T Consensus       409 ssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~d~F-----------~IfvWS~qTG  468 (893)
T KOG0291|consen  409 SSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSF-----------EIFVWSVQTG  468 (893)
T ss_pred             EeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeeccceE-----------EEEEEEeecC
Confidence            444 37899999888333332222 245667777776  888888886655           7888888887

>smart00284 OLF Olfactomedin-like domains

Probab=94.45  E-value=2.2  Score=36.71  Aligned_cols=120  Identities=11%  Similarity=0.039  Sum_probs=72.4

Q ss_pred             ceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcE---EeccCCc-----c-------CCcEEEEcCeEE
Q 021080          159 VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGW---TVEDYGW-----L-------QGPMAIVHDSVY  223 (317)
Q Consensus       159 ~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W---~~~~~~~-----~-------~~~~~~~~~~ly  223 (317)
                      ++...=.+|.+ ..+...++++|.+|.--.....+.+||+.+++-   ..++...     +       ..-.++-.+.|+
T Consensus        63 ~~~~~~~Lp~~-~~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLW  141 (255)
T smart00284       63 KNPTDHPLPHA-GQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLW  141 (255)
T ss_pred             CCceEEECCCc-cccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceE
Confidence            33333346666 778888999999999776678899999999974   4444211     0       123344455566


Q ss_pred             EE---eC--c--EEEEecCCc------eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecC
Q 021080          224 LM---SH--G--LIIKQHRDV------RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVG  290 (317)
Q Consensus       224 ~~---g~--~--~~~~yd~~~------W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~  290 (317)
                      ++   ..  +  .+-+.|+++      |..  ..+  ....+-++++| |.||++--....        ...=.+.||..
T Consensus       142 vIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~--k~sa~naFmvC-GvLY~~~s~~~~--------~~~I~yayDt~  208 (255)
T smart00284      142 VIYATEQNAGKIVISKLNPATLTIENTWIT--TYN--KRSASNAFMIC-GILYVTRSLGSK--------GEKVFYAYDTN  208 (255)
T ss_pred             EEEeccCCCCCEEEEeeCcccceEEEEEEc--CCC--cccccccEEEe-eEEEEEccCCCC--------CcEEEEEEECC
Confidence            55   22  2  234666654      776  333  23344455555 889998532222        11235789999


Q ss_pred             CC
Q 021080          291 AE  292 (317)
Q Consensus       291 ~~  292 (317)
                      ++
T Consensus       209 t~  210 (255)
T smart00284      209 TG  210 (255)
T ss_pred             CC
Confidence            87

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.43  E-value=0.64  Score=46.66  Aligned_cols=121  Identities=15%  Similarity=0.148  Sum_probs=67.3

Q ss_pred             eEEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCccCC--------------------------cEEEEcCeEEEE
Q 021080          174 CTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQG--------------------------PMAIVHDSVYLM  225 (317)
Q Consensus       174 ~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~--------------------------~~~~~~~~ly~~  225 (317)
                      .+-++++|+||+... .+.++++|..+++  |+.-.......                          ..+++++++|+.
T Consensus       188 ~TPlvvgg~lYv~t~-~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~  266 (764)
T TIGR03074       188 ATPLKVGDTLYLCTP-HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILP  266 (764)
T ss_pred             cCCEEECCEEEEECC-CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEe
Confidence            455788999999865 4678999988765  88655432100                          012345577665


Q ss_pred             eC-cEEEEecCCc----eEE-----E---ecccc---ccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeec
Q 021080          226 SH-GLIIKQHRDV----RKV-----V---ASASE---FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTV  289 (317)
Q Consensus       226 g~-~~~~~yd~~~----W~~-----v---~~~~~---~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~  289 (317)
                      .. +.++.+|.++    |.-     +   ..+..   ..-....+-+..+|+|++ |+....+....  .....|..||.
T Consensus       267 T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~--~~~G~I~A~Da  343 (764)
T TIGR03074       267 TSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTD--EPSGVIRAFDV  343 (764)
T ss_pred             cCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-Eeccccccccc--CCCcEEEEEEC
Confidence            43 5667776554    642     1   11211   111122334566787776 44321110000  13456889999


Q ss_pred             CCCCCceee
Q 021080          290 GAERPTWRQ  298 (317)
Q Consensus       290 ~~~~~~W~~  298 (317)
                      ++++..|+-
T Consensus       344 ~TGkl~W~~  352 (764)
T TIGR03074       344 NTGALVWAW  352 (764)
T ss_pred             CCCcEeeEE
Confidence            999888874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=94.00  E-value=0.23  Score=42.84  Aligned_cols=86  Identities=17%  Similarity=0.167  Sum_probs=57.5

Q ss_pred             cCCCCccccccCCeeEEEeC--C--EEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCC
Q 021080           82 LPVLPSKIRHLAHFGVVSTA--G--KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEK  157 (317)
Q Consensus        82 ~~~~p~~~~~r~~~~~~~~~--~--~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t  157 (317)
                      +..+|..   |++|++.++.  +  -+.+|||.+-.       .-++.   ....       ++..-+....++..|++-
T Consensus        81 vGdvP~a---RYGHt~~vV~SrGKta~VlFGGRSY~-------P~~qR---TTen-------WNsVvDC~P~VfLiDleF  140 (337)
T PF03089_consen   81 VGDVPEA---RYGHTINVVHSRGKTACVLFGGRSYM-------PPGQR---TTEN-------WNSVVDCPPQVFLIDLEF  140 (337)
T ss_pred             cCCCCcc---cccceEEEEEECCcEEEEEECCcccC-------Ccccc---chhh-------cceeccCCCeEEEEeccc
Confidence            3566664   9999977763  2  37888986431       00111   1111       111233467888899888


Q ss_pred             Ccee--eCCCCCccCCCceEEEEECCEEEEEec
Q 021080          158 DVWV--PIPDLHRTHNSACTGVVIGGKVHVLHK  188 (317)
Q Consensus       158 ~~W~--~~~~~p~~~r~~~~~~~~~g~lyv~gG  188 (317)
                      +-.+  .++.+..+ ...|.+..-++.+|++||
T Consensus       141 GC~tah~lpEl~dG-~SFHvslar~D~VYilGG  172 (337)
T PF03089_consen  141 GCCTAHTLPELQDG-QSFHVSLARNDCVYILGG  172 (337)
T ss_pred             cccccccchhhcCC-eEEEEEEecCceEEEEcc
Confidence            7664  56888888 889999999999999999

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.96  E-value=4.9  Score=36.74  Aligned_cols=195  Identities=19%  Similarity=0.162  Sum_probs=108.0

Q ss_pred             cCceEEEEEeCCCCceEEEeCCCCC--EeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCccccccee
Q 021080           54 SENLLCVCAFDPENLWQLYDPLRDL--WITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW  131 (317)
Q Consensus        54 ~~~~l~v~gg~~~~~~~~yd~~~~~--W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~  131 (317)
                      .++.+|+...  ...++++|+.+.+  |.....--..   .........+++||+-...                     
T Consensus        67 ~dg~v~~~~~--~G~i~A~d~~~g~~~W~~~~~~~~~---~~~~~~~~~~G~i~~g~~~---------------------  120 (370)
T COG1520          67 GDGTVYVGTR--DGNIFALNPDTGLVKWSYPLLGAVA---QLSGPILGSDGKIYVGSWD---------------------  120 (370)
T ss_pred             eCCeEEEecC--CCcEEEEeCCCCcEEecccCcCcce---eccCceEEeCCeEEEeccc---------------------
Confidence            4667777632  2389999999887  8654321000   1222233337777765542                     


Q ss_pred             EecccCCCCCCCcCCCceeEEeeCCC--CceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc--EEecc
Q 021080          132 SYDPVTRGFTSCRKSISQAEMYDPEK--DVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVED  207 (317)
Q Consensus       132 ~~d~~~~G~~~~~~~~~~~~~yd~~t--~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~  207 (317)
                                      ..+++||..+  ..|+.-.+.. . +.....++.++.+|+.. ....+.++|..+.+  |..-.
T Consensus       121 ----------------g~~y~ld~~~G~~~W~~~~~~~-~-~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~  181 (370)
T COG1520         121 ----------------GKLYALDASTGTLVWSRNVGGS-P-YYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYET  181 (370)
T ss_pred             ----------------ceEEEEECCCCcEEEEEecCCC-e-EEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEec
Confidence                            1455555533  3576443332 4 44555677788888874 24678888887664  87433


Q ss_pred             CC-cc---CCcEEEEcCeEEEEeCc---EEEEecCCc----eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCce
Q 021080          208 YG-WL---QGPMAIVHDSVYLMSHG---LIIKQHRDV----RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNW  276 (317)
Q Consensus       208 ~~-~~---~~~~~~~~~~ly~~g~~---~~~~yd~~~----W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~  276 (317)
                      .. ..   ....+..++.+|+-..+   .++.+|++.    |+.-...+.......-......+.||+-++.....    
T Consensus       182 ~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~----  257 (370)
T COG1520         182 PAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGS----  257 (370)
T ss_pred             CCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEe----
Confidence            21 11   22223567777777553   688999865    98643333111000001234456666666632211    


Q ss_pred             ecccCcceeEeecCCCCCceeecc
Q 021080          277 DIKPMSDVDVLTVGAERPTWRQVS  300 (317)
Q Consensus       277 ~~~~~~~v~~yd~~~~~~~W~~~~  300 (317)
                         ....+.++|..+.+..|+.=.
T Consensus       258 ---~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         258 ---YGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             ---cCCeEEEEEcCCCceEEEEec
Confidence               233578888888877887644

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=93.93  E-value=0.68  Score=35.38  Aligned_cols=81  Identities=11%  Similarity=0.109  Sum_probs=53.6

Q ss_pred             EEECCEEEEEec----CceeEEEEeCCCCcEEeccCCccCCcEEEEcCeEEEEeCcEEEEecCCceEEEecccccccccc
Q 021080          177 VVIGGKVHVLHK----GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIG  252 (317)
Q Consensus       177 ~~~~g~lyv~gG----~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ly~~g~~~~~~yd~~~W~~v~~~~~~~~r~~  252 (317)
                      +.+||.+|.+..    ....|.+||..+++|+.++.+     .                             ........
T Consensus         2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P-----~-----------------------------~~~~~~~~   47 (129)
T PF08268_consen    2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLP-----E-----------------------------DPYSSDCS   47 (129)
T ss_pred             EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEee-----e-----------------------------eeccccCc
Confidence            467899998876    357899999999999888632     0                             00124455


Q ss_pred             EEEEEECCeEEEEeCcccCCCCceecccCcceeEee-cCCCCCceeec
Q 021080          253 FAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLT-VGAERPTWRQV  299 (317)
Q Consensus       253 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd-~~~~~~~W~~~  299 (317)
                      ..++.++|+|-++.-......      ..-++|+.+ .+++  +|...
T Consensus        48 ~~L~~~~G~L~~v~~~~~~~~------~~~~iWvLeD~~k~--~Wsk~   87 (129)
T PF08268_consen   48 STLIEYKGKLALVSYNDQGEP------DSIDIWVLEDYEKQ--EWSKK   87 (129)
T ss_pred             cEEEEeCCeEEEEEecCCCCc------ceEEEEEeeccccc--eEEEE
Confidence            678899999988765443311      123677764 4444  99866

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.81  E-value=3.7  Score=34.77  Aligned_cols=106  Identities=17%  Similarity=0.159  Sum_probs=74.0

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCC--EEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAG--KLFVLGGGSDAVDPLTGDQDGSFATNEVWS  132 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  132 (317)
                      +..+..+||+  ..++.+|..+++-.+-  +..   +......+..+.  .|.+.|+.+                     
T Consensus        71 nskf~s~GgD--k~v~vwDV~TGkv~Rr--~rg---H~aqVNtV~fNeesSVv~SgsfD---------------------  122 (307)
T KOG0316|consen   71 NSKFASCGGD--KAVQVWDVNTGKVDRR--FRG---HLAQVNTVRFNEESSVVASGSFD---------------------  122 (307)
T ss_pred             ccccccCCCC--ceEEEEEcccCeeeee--ccc---ccceeeEEEecCcceEEEecccc---------------------
Confidence            4456666663  5788999998764321  111   012233444543  355556542                     


Q ss_pred             ecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEE
Q 021080          133 YDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWT  204 (317)
Q Consensus       133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~  204 (317)
                                     .++.+||.+++.-+.+.-+... +.+-.++.+.+...+.|.....+-.||...++-.
T Consensus       123 ---------------~s~r~wDCRS~s~ePiQildea-~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~  178 (307)
T KOG0316|consen  123 ---------------SSVRLWDCRSRSFEPIQILDEA-KDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLS  178 (307)
T ss_pred             ---------------ceeEEEEcccCCCCccchhhhh-cCceeEEEecccEEEeeccCCcEEEEEeecceee
Confidence                           6788899999999999888888 8888889898888888776678999999888754

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.48  E-value=1.4  Score=42.12  Aligned_cols=119  Identities=13%  Similarity=0.076  Sum_probs=70.4

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCc--------cCCcEEEEc-CeEEEEeC-cEEEEecCCc----e
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGW--------LQGPMAIVH-DSVYLMSH-GLIIKQHRDV----R  238 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~--------~~~~~~~~~-~~ly~~g~-~~~~~yd~~~----W  238 (317)
                      +.++.++++|+... ...+.++|..+++  |+.-....        ...+.+..+ +++|+... +.++++|.++    |
T Consensus        56 sPvv~~g~vy~~~~-~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W  134 (488)
T cd00216          56 TPLVVDGDMYFTTS-HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVW  134 (488)
T ss_pred             CCEEECCEEEEeCC-CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEee
Confidence            45688999999755 3679999998765  98643321        022334456 88888764 7899999765    9


Q ss_pred             EEEecccc-ccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080          239 KVVASASE-FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       239 ~~v~~~~~-~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~  298 (317)
                      +.-...+. .......+.+..++.+|+ |........   ......++.+|.++++..|+.
T Consensus       135 ~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~---~~~~g~v~alD~~TG~~~W~~  191 (488)
T cd00216         135 KFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFA---CGVRGALRAYDVETGKLLWRF  191 (488)
T ss_pred             eecCCCCcCcceEecCCCEEECCEEEE-ecccccccc---CCCCcEEEEEECCCCceeeEe
Confidence            87433221 000012233455666665 322111000   012347899999999888975

The alignment model contains an 8-bladed beta-propeller.

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=93.43  E-value=7.9  Score=37.42  Aligned_cols=44  Identities=16%  Similarity=0.298  Sum_probs=38.7

Q ss_pred             CCcCCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhH
Q 021080            2 SELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELF   45 (317)
Q Consensus         2 ~~~~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~   45 (317)
                      +.++..||-++...+|..++.+.+..++.+|+.|+.+..+....
T Consensus       105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~  148 (537)
T KOG0274|consen  105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW  148 (537)
T ss_pred             cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence            35778899999999999999999999999999999987766543

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=92.99  E-value=2.2  Score=36.75  Aligned_cols=122  Identities=11%  Similarity=0.025  Sum_probs=75.7

Q ss_pred             CCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc---EEeccCCcc------------CCcEEEEcCe
Q 021080          157 KDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG---WTVEDYGWL------------QGPMAIVHDS  221 (317)
Q Consensus       157 t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~---W~~~~~~~~------------~~~~~~~~~~  221 (317)
                      .++....-.+|.+ ..+.+.++++|.+|---.....|.+||+.++.   +..++....            ....|+-.+.
T Consensus        56 ~~~~~~~~~Lp~~-~~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G  134 (250)
T PF02191_consen   56 NGRSSRTYKLPYP-WQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG  134 (250)
T ss_pred             cCCCceEEEEece-eccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC
Confidence            3444444456666 67778899999999987778899999999986   445543211            1233444556


Q ss_pred             EEEEeC-----c--EEEEecCCc------eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEee
Q 021080          222 VYLMSH-----G--LIIKQHRDV------RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLT  288 (317)
Q Consensus       222 ly~~g~-----~--~~~~yd~~~------W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd  288 (317)
                      |+++=.     +  .+-+.|++.      |..  ..+  ....+.++++| |.||++.-.....        ..=.++||
T Consensus       135 LWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~--k~~~~naFmvC-GvLY~~~s~~~~~--------~~I~yafD  201 (250)
T PF02191_consen  135 LWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYP--KRSAGNAFMVC-GVLYATDSYDTRD--------TEIFYAFD  201 (250)
T ss_pred             EEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccC--chhhcceeeEe-eEEEEEEECCCCC--------cEEEEEEE
Confidence            666621     1  234556553      775  233  23344455555 8899997766542        12346899


Q ss_pred             cCCC
Q 021080          289 VGAE  292 (317)
Q Consensus       289 ~~~~  292 (317)
                      ..++
T Consensus       202 t~t~  205 (250)
T PF02191_consen  202 TYTG  205 (250)
T ss_pred             CCCC
Confidence            9888

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>cd00094 HX Hemopexin-like repeats

Probab=92.92  E-value=4.6  Score=33.28  Aligned_cols=96  Identities=11%  Similarity=0.026  Sum_probs=54.7

Q ss_pred             CEEEEEecCceeEEEEeCCCCcEE---eccC--Cc---cCCcEEE-E--cCeEEEEeCcEEEEecCCceEEEec------
Q 021080          181 GKVHVLHKGLSTVQVLDHMGLGWT---VEDY--GW---LQGPMAI-V--HDSVYLMSHGLIIKQHRDVRKVVAS------  243 (317)
Q Consensus       181 g~lyv~gG~~~~v~~yd~~~~~W~---~~~~--~~---~~~~~~~-~--~~~ly~~g~~~~~~yd~~~W~~v~~------  243 (317)
                      |++|++-|  +..++||..+....   .+..  .+   ....+|. .  ++++|++.|+..+.|+...-+....      
T Consensus        63 ~~~yfFkg--~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~y~ry~~~~~~v~~~yP~~i~  140 (194)
T cd00094          63 GKIYFFKG--DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDKYWRYDEKTQKMDPGYPKLIE  140 (194)
T ss_pred             CEEEEECC--CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCEEEEEeCCCccccCCCCcchh
Confidence            89999965  46777876542221   1111  00   1122332 2  5799999999999998644221111      


Q ss_pred             --cccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          244 --ASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       244 --~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                        .+........++...++++|++-|              +..+.||..++
T Consensus       141 ~~w~g~p~~idaa~~~~~~~~yfF~g--------------~~y~~~d~~~~  177 (194)
T cd00094         141 TDFPGVPDKVDAAFRWLDGYYYFFKG--------------DQYWRFDPRSK  177 (194)
T ss_pred             hcCCCcCCCcceeEEeCCCcEEEEEC--------------CEEEEEeCccc
Confidence              111111233344343489999977              37788998877

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.64  E-value=7.9  Score=35.34  Aligned_cols=137  Identities=15%  Similarity=0.080  Sum_probs=80.7

Q ss_pred             eeEEeeCCCCc--eeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCC--cEEeccCC-cc-CCcEEEEcCeE
Q 021080          149 QAEMYDPEKDV--WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGL--GWTVEDYG-WL-QGPMAIVHDSV  222 (317)
Q Consensus       149 ~~~~yd~~t~~--W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~--~W~~~~~~-~~-~~~~~~~~~~l  222 (317)
                      .+..+|+++.+  |+....-... ........-+|+||+-.. ...+++||..++  .|+.-... +. ..+.+..++.+
T Consensus        79 ~i~A~d~~~g~~~W~~~~~~~~~-~~~~~~~~~~G~i~~g~~-~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v  156 (370)
T COG1520          79 NIFALNPDTGLVKWSYPLLGAVA-QLSGPILGSDGKIYVGSW-DGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTV  156 (370)
T ss_pred             cEEEEeCCCCcEEecccCcCcce-eccCceEEeCCeEEEecc-cceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEE
Confidence            45566666665  8654321011 111223333899887654 337999999544  58866544 22 34455667788


Q ss_pred             EEE-eCcEEEEecCCc----eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCcee
Q 021080          223 YLM-SHGLIIKQHRDV----RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWR  297 (317)
Q Consensus       223 y~~-g~~~~~~yd~~~----W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~  297 (317)
                      |+. ..+.++.++.++    |+.-...+ ...+.....+...+.+|+..-. ..          ..++.+|++++...|+
T Consensus       157 ~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~-~~----------~~~~a~~~~~G~~~w~  224 (370)
T COG1520         157 YVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDG-YD----------GILYALNAEDGTLKWS  224 (370)
T ss_pred             EEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCC-Cc----------ceEEEEEccCCcEeee
Confidence            888 468899998774    98554432 1223333333556777765322 11          1678899988888898


Q ss_pred             ec
Q 021080          298 QV  299 (317)
Q Consensus       298 ~~  299 (317)
                      .-
T Consensus       225 ~~  226 (370)
T COG1520         225 QK  226 (370)
T ss_pred             ee
Confidence            54

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=91.97  E-value=4.9  Score=37.14  Aligned_cols=127  Identities=11%  Similarity=0.023  Sum_probs=70.7

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCC--ceEEEEECCE-EEEEecCceeEEEEeCCCCcEEeccCCcc-------CCcEEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNS--ACTGVVIGGK-VHVLHKGLSTVQVLDHMGLGWTVEDYGWL-------QGPMAI  217 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~--~~~~~~~~g~-lyv~gG~~~~v~~yd~~~~~W~~~~~~~~-------~~~~~~  217 (317)
                      -.++.-|-++|.  .+.++... ++  ..+...-+|. ..+.+|...-.+.||+++.+-+.+.++..       ...++-
T Consensus       237 lrifqvDGk~N~--~lqS~~l~-~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh  313 (514)
T KOG2055|consen  237 LRIFQVDGKVNP--KLQSIHLE-KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH  313 (514)
T ss_pred             EEEEEecCccCh--hheeeeec-cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC
Confidence            344555556665  44444332 11  1223333565 77777767789999999999888876543       122222


Q ss_pred             EcCeEEEEeC-cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          218 VHDSVYLMSH-GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       218 ~~~~ly~~g~-~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .++.|-+.|. +.+......+  |-.--.++  -....+.+...+.+|++.||.             .+||+||+.+.
T Consensus       314 d~~fia~~G~~G~I~lLhakT~eli~s~Kie--G~v~~~~fsSdsk~l~~~~~~-------------GeV~v~nl~~~  376 (514)
T KOG2055|consen  314 DSNFIAIAGNNGHIHLLHAKTKELITSFKIE--GVVSDFTFSSDSKELLASGGT-------------GEVYVWNLRQN  376 (514)
T ss_pred             CCCeEEEcccCceEEeehhhhhhhhheeeec--cEEeeEEEecCCcEEEEEcCC-------------ceEEEEecCCc
Confidence            3333333332 5666666555  54333333  122333334445677888773             28899999987

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.83  E-value=11  Score=35.10  Aligned_cols=118  Identities=14%  Similarity=0.059  Sum_probs=59.0

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEEE-CCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE------cCe
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVI-GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV------HDS  221 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~-~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~------~~~  221 (317)
                      .+-.||.++.+ ..+-.+..+..-. ....+ .|.+++..| .+.+-++|+.++.=. +..+..+...+++      +-+
T Consensus       177 ~vrl~DtR~~~-~~v~elnhg~pVe-~vl~lpsgs~iasAg-Gn~vkVWDl~~G~ql-l~~~~~H~KtVTcL~l~s~~~r  252 (487)
T KOG0310|consen  177 KVRLWDTRSLT-SRVVELNHGCPVE-SVLALPSGSLIASAG-GNSVKVWDLTTGGQL-LTSMFNHNKTVTCLRLASDSTR  252 (487)
T ss_pred             eEEEEEeccCC-ceeEEecCCCcee-eEEEcCCCCEEEEcC-CCeEEEEEecCCcee-hhhhhcccceEEEEEeecCCce
Confidence            34556666663 2223332221111 23333 445555544 356888888755411 1111112223222      234


Q ss_pred             EEEEeC-cEEEEecCCceEEEeccccccccccEEEEEECCeEEEEeCcccC
Q 021080          222 VYLMSH-GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGP  271 (317)
Q Consensus       222 ly~~g~-~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~  271 (317)
                      |+..+- +.+..||...|+.+-.+.-+.+--.. .++-+|.-.++|+.++.
T Consensus       253 LlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsi-avs~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  253 LLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSI-AVSPDDQTVVIGMSNGL  302 (487)
T ss_pred             EeecccccceEEEEccceEEEEeeecccceeeE-EecCCCceEEEecccce
Confidence            444443 78999998889998877632222222 12336777788876543

>cd00094 HX Hemopexin-like repeats

Probab=91.12  E-value=7.6  Score=31.96  Aligned_cols=56  Identities=9%  Similarity=-0.015  Sum_probs=35.3

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEe-----ccCCcc----CCcEE-EE-cCeEEEEeCcEEEEecCCc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTV-----EDYGWL----QGPMA-IV-HDSVYLMSHGLIIKQHRDV  237 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~-----~~~~~~----~~~~~-~~-~~~ly~~g~~~~~~yd~~~  237 (317)
                      ++++|++.|  +..+.||..+++...     +...++    ...+| .. ++++|++.|+..+.||...
T Consensus       110 ~~~~yfFkg--~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~g~~y~~~d~~~  176 (194)
T cd00094         110 NGKTYFFKG--DKYWRYDEKTQKMDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFFKGDQYWRFDPRS  176 (194)
T ss_pred             CCEEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCcCCCcceeEEeCCCcEEEEECCEEEEEeCcc
Confidence            689999977  567788875554321     111111    12222 23 3889999999999998754

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=90.90  E-value=6.5  Score=33.47  Aligned_cols=112  Identities=16%  Similarity=0.052  Sum_probs=69.2

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE--cCeEEEEeCcEEEEecCCc--eEEEecccc---cccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV--HDSVYLMSHGLIIKQHRDV--RKVVASASE---FRRRIG  252 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~--~~~ly~~g~~~~~~yd~~~--W~~v~~~~~---~~~r~~  252 (317)
                      ++.||+..-....++.+|+.++.-+.+.... +..++..  ++++|+.....+..+|+++  ++.+...+.   ...+.+
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~N   89 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPN   89 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCc
Confidence            5889998766678999999998866554332 2233333  6899999987777778765  777776641   234454


Q ss_pred             EEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeec
Q 021080          253 FAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV  299 (317)
Q Consensus       253 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~  299 (317)
                      -..+.-+|.||+..-.......    .....++++++. +  +.+.+
T Consensus        90 D~~vd~~G~ly~t~~~~~~~~~----~~~g~v~~~~~~-~--~~~~~  129 (246)
T PF08450_consen   90 DVAVDPDGNLYVTDSGGGGASG----IDPGSVYRIDPD-G--KVTVV  129 (246)
T ss_dssp             EEEE-TTS-EEEEEECCBCTTC----GGSEEEEEEETT-S--EEEEE
T ss_pred             eEEEcCCCCEEEEecCCCcccc----ccccceEEECCC-C--eEEEE
Confidence            4455557888887432222110    011468888887 4  54444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=90.87  E-value=9.7  Score=32.75  Aligned_cols=89  Identities=16%  Similarity=0.061  Sum_probs=45.8

Q ss_pred             ceeEEeeCCCCceeeCCCCC-ccCCCceEEEEECC-EEEEEecCceeEEEEeCCCCcEEe-ccCCccCCcEEEE--cCeE
Q 021080          148 SQAEMYDPEKDVWVPIPDLH-RTHNSACTGVVIGG-KVHVLHKGLSTVQVLDHMGLGWTV-EDYGWLQGPMAIV--HDSV  222 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p-~~~r~~~~~~~~~g-~lyv~gG~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~--~~~l  222 (317)
                      ..+.+||+.+++-...-... .+ +  ..+..-++ .+|+.++....+..||..+.+... ++........+..  ++.+
T Consensus        11 ~~v~~~d~~t~~~~~~~~~~~~~-~--~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l   87 (300)
T TIGR03866        11 NTISVIDTATLEVTRTFPVGQRP-R--GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKIL   87 (300)
T ss_pred             CEEEEEECCCCceEEEEECCCCC-C--ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEE
Confidence            35666776665432221111 11 1  11222344 577777666779999998876543 2221111122221  3356


Q ss_pred             EEEeC--cEEEEecCCceE
Q 021080          223 YLMSH--GLIIKQHRDVRK  239 (317)
Q Consensus       223 y~~g~--~~~~~yd~~~W~  239 (317)
                      |+.+.  +.+..||.++-+
T Consensus        88 ~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        88 YIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             EEEcCCCCeEEEEECCCCe
Confidence            66643  678888887633

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK13684 Ycf48-like protein; Provisional

Probab=89.40  E-value=16  Score=32.98  Aligned_cols=109  Identities=12%  Similarity=0.174  Sum_probs=56.5

Q ss_pred             eCCCCceeeCCCCCccCCCceEE-EEECCEEEEEecCceeEEEE--eCCCCcEEeccCCcc-----CCcEEEE-cCeEEE
Q 021080          154 DPEKDVWVPIPDLHRTHNSACTG-VVIGGKVHVLHKGLSTVQVL--DHMGLGWTVEDYGWL-----QGPMAIV-HDSVYL  224 (317)
Q Consensus       154 d~~t~~W~~~~~~p~~~r~~~~~-~~~~g~lyv~gG~~~~v~~y--d~~~~~W~~~~~~~~-----~~~~~~~-~~~ly~  224 (317)
                      |....+|+.+... .. +..... ..-++.++++|.. . ...+  +-.-.+|+.+.....     ...++.. ++.+++
T Consensus       200 ~~gg~tW~~~~~~-~~-~~l~~i~~~~~g~~~~vg~~-G-~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~  275 (334)
T PRK13684        200 EPGQTAWTPHQRN-SS-RRLQSMGFQPDGNLWMLARG-G-QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA  275 (334)
T ss_pred             CCCCCeEEEeeCC-Cc-ccceeeeEcCCCCEEEEecC-C-EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE
Confidence            3344679887543 32 223333 3357788888762 2 2334  223457997543211     1122222 668999


Q ss_pred             EeC-c-EEEEecCCc-eEEEeccccccccccEEEEEE-CCeEEEEeC
Q 021080          225 MSH-G-LIIKQHRDV-RKVVASASEFRRRIGFAMIGM-GDDIYVIGG  267 (317)
Q Consensus       225 ~g~-~-~~~~yd~~~-W~~v~~~~~~~~r~~~~~~~~-~~~lyv~GG  267 (317)
                      ++. + .+...|..+ |+.+...+. .......++.. ++++|+.|.
T Consensus       276 ~G~~G~v~~S~d~G~tW~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        276 GGGNGTLLVSKDGGKTWEKDPVGEE-VPSNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             EcCCCeEEEeCCCCCCCeECCcCCC-CCcceEEEEEeCCCceEEECC
Confidence            876 3 344455444 999754221 11123344444 677877765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.68  E-value=22  Score=33.63  Aligned_cols=56  Identities=14%  Similarity=0.018  Sum_probs=34.2

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWT  204 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~  204 (317)
                      ..+.++|.++.+-...-+-... .....+..-++.+++.+.....+..||..++.-.
T Consensus       268 ~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~  323 (456)
T KOG0266|consen  268 GTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL  323 (456)
T ss_pred             CcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence            5677788887554433222222 2222233446777777776778999999988843

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.03  E-value=37  Score=34.43  Aligned_cols=122  Identities=13%  Similarity=0.016  Sum_probs=66.0

Q ss_pred             EEECCEEEEEecCceeEEEEeCCCCc--EEecc-----------CCc-----cCCcEEEEcCeEEEEe-----------C
Q 021080          177 VVIGGKVHVLHKGLSTVQVLDHMGLG--WTVED-----------YGW-----LQGPMAIVHDSVYLMS-----------H  227 (317)
Q Consensus       177 ~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~-----------~~~-----~~~~~~~~~~~ly~~g-----------~  227 (317)
                      ++++++||+-.. ...+.++|.++++  |+--.           ...     ...+-++.+|.+++-+           .
T Consensus       257 ~~~~~rV~~~T~-Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~  335 (764)
T TIGR03074       257 ADCARRIILPTS-DARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPS  335 (764)
T ss_pred             cccCCEEEEecC-CCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCC
Confidence            356677776433 4567888877665  64211           111     0234456788888743           2


Q ss_pred             cEEEEecCCc----eEEEeccccc---------cccccE---EEEEE---CCeEEEEeCcccCC---CCc--eecccCcc
Q 021080          228 GLIIKQHRDV----RKVVASASEF---------RRRIGF---AMIGM---GDDIYVIGGVIGPD---RWN--WDIKPMSD  283 (317)
Q Consensus       228 ~~~~~yd~~~----W~~v~~~~~~---------~~r~~~---~~~~~---~~~lyv~GG~~~~~---~~~--~~~~~~~~  283 (317)
                      +.+..||.++    |+.-..-|..         ..+.+.   ...++   .|.+|+=-|.....   ...  .+..+.+.
T Consensus       336 G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s  415 (764)
T TIGR03074       336 GVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS  415 (764)
T ss_pred             cEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce
Confidence            5689999876    8754321110         001110   12233   25666644432221   000  11246778


Q ss_pred             eeEeecCCCCCceeec
Q 021080          284 VDVLTVGAERPTWRQV  299 (317)
Q Consensus       284 v~~yd~~~~~~~W~~~  299 (317)
                      +...|+++++.+|...
T Consensus       416 lvALD~~TGk~~W~~Q  431 (764)
T TIGR03074       416 LVALDATTGKERWVFQ  431 (764)
T ss_pred             EEEEeCCCCceEEEec
Confidence            9999999998899764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=86.09  E-value=31  Score=32.55  Aligned_cols=93  Identities=10%  Similarity=0.046  Sum_probs=49.6

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEeccCCcc--CCcEEEEcC-e
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHD-S  221 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~-~  221 (317)
                      .+++++|..+++.+.+..-... ... ....-+| .|++...  ....++.+|+.+++++.+.....  ..+...-+| .
T Consensus       286 ~~Iy~~dl~tg~~~~lt~~~~~-~~~-p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~  363 (448)
T PRK04792        286 PEIYVVDIATKALTRITRHRAI-DTE-PSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRS  363 (448)
T ss_pred             eEEEEEECCCCCeEECccCCCC-ccc-eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCE
Confidence            4677788888877776543211 111 1222344 4555443  34678999999888877642111  112222244 4


Q ss_pred             EEEEeC----cEEEEecCCc--eEEEe
Q 021080          222 VYLMSH----GLIIKQHRDV--RKVVA  242 (317)
Q Consensus       222 ly~~g~----~~~~~yd~~~--W~~v~  242 (317)
                      |++...    ..++.+|.+.  .+.+.
T Consensus       364 l~~~~~~~g~~~I~~~dl~~g~~~~lt  390 (448)
T PRK04792        364 MIMVNRTNGKFNIARQDLETGAMQVLT  390 (448)
T ss_pred             EEEEEecCCceEEEEEECCCCCeEEcc
Confidence            555432    3677777665  55443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=84.97  E-value=28  Score=31.02  Aligned_cols=140  Identities=9%  Similarity=-0.086  Sum_probs=68.2

Q ss_pred             eEEEEEeCCCCceEEEeCCC-CCEeecCCCCccccccCCeeEEE--eCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           57 LLCVCAFDPENLWQLYDPLR-DLWITLPVLPSKIRHLAHFGVVS--TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        57 ~l~v~gg~~~~~~~~yd~~~-~~W~~~~~~p~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      ++|+.... ...+..||..+ +++..+...+..   -....++.  -+..+|+.+...                      
T Consensus         3 ~~y~~~~~-~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~spd~~~lyv~~~~~----------------------   56 (330)
T PRK11028          3 IVYIASPE-SQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISPDKRHLYVGVRPE----------------------   56 (330)
T ss_pred             EEEEEcCC-CCCEEEEEECCCCceeeeeEEecC---CCCccEEECCCCCEEEEEECCC----------------------
Confidence            56766443 36788888854 566655544432   11122322  245677754311                      


Q ss_pred             cccCCCCCCCcCCCceeEEeeCC-CCceeeCCCCCccCCCceEEEE-ECC-EEEEEecCceeEEEEeCCCCc--EEecc-
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPE-KDVWVPIPDLHRTHNSACTGVV-IGG-KVHVLHKGLSTVQVLDHMGLG--WTVED-  207 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~-t~~W~~~~~~p~~~r~~~~~~~-~~g-~lyv~gG~~~~v~~yd~~~~~--W~~~~-  207 (317)
                                    ..+.+|+.. +++++.+...+.+ ...+..+. -+| .+|+.....+.+.+||+.++.  ...+. 
T Consensus        57 --------------~~i~~~~~~~~g~l~~~~~~~~~-~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~  121 (330)
T PRK11028         57 --------------FRVLSYRIADDGALTFAAESPLP-GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI  121 (330)
T ss_pred             --------------CcEEEEEECCCCceEEeeeecCC-CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee
Confidence                          234445543 4456555433332 21222222 244 477665445678888876431  11111 


Q ss_pred             --CCccCCcEEEE-c-CeEEEEeC--cEEEEecCCc
Q 021080          208 --YGWLQGPMAIV-H-DSVYLMSH--GLIIKQHRDV  237 (317)
Q Consensus       208 --~~~~~~~~~~~-~-~~ly~~g~--~~~~~yd~~~  237 (317)
                        ....++.++.. + ..+|+.+.  +.+..||.+.
T Consensus       122 ~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028        122 IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence              11112333222 3 35666653  7788888755

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=84.88  E-value=38  Score=32.58  Aligned_cols=111  Identities=14%  Similarity=0.132  Sum_probs=57.7

Q ss_pred             ceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           56 NLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        56 ~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      .-||+.|.  .+++|.+|.++++|-.  ++...   -....++.+  -+.++++|+.++                .|..+
T Consensus       146 cDly~~gs--g~evYRlNLEqGrfL~--P~~~~---~~~lN~v~in~~hgLla~Gt~~g----------------~VEfw  202 (703)
T KOG2321|consen  146 CDLYLVGS--GSEVYRLNLEQGRFLN--PFETD---SGELNVVSINEEHGLLACGTEDG----------------VVEFW  202 (703)
T ss_pred             ccEEEeec--CcceEEEEcccccccc--ccccc---cccceeeeecCccceEEecccCc----------------eEEEe
Confidence            34666554  4799999999999964  22221   112223333  346888888542                34444


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccC-CCceEEEEE-CCEEEEEec-CceeEEEEeCCCCc
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTH-NSACTGVVI-GGKVHVLHK-GLSTVQVLDHMGLG  202 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~-r~~~~~~~~-~g~lyv~gG-~~~~v~~yd~~~~~  202 (317)
                      ||..+         +.+-..|..++    +.+.|... ....+++.+ |+-|.+.-| ....++.||+.+.+
T Consensus       203 DpR~k---------srv~~l~~~~~----v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~  261 (703)
T KOG2321|consen  203 DPRDK---------SRVGTLDAASS----VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK  261 (703)
T ss_pred             cchhh---------hhheeeecccc----cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence            44332         11111111111    22222220 112234444 447777666 66789999998765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=83.74  E-value=39  Score=31.82  Aligned_cols=136  Identities=12%  Similarity=0.070  Sum_probs=69.5

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEeccCCcc--CCcEEEEcC-e
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHD-S  221 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~-~  221 (317)
                      ..++++|..+++-+.+...+.. .... +..-|| +|++...  ....++.+|..+++.+.+.....  ..+.-.-++ .
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g~-~~~~-~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~  319 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPGI-NGAP-RFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKS  319 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCCC-cCCe-eECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCE
Confidence            4677778777766666544332 2211 222244 4555432  34579999999988877754322  111112244 4


Q ss_pred             EEEEeC----cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCc
Q 021080          222 VYLMSH----GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPT  295 (317)
Q Consensus       222 ly~~g~----~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~  295 (317)
                      |++...    ..++.+|.+.  ++.+..-.  ..-.......-++.|++.+...          ....++++|+.++  +
T Consensus       320 I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~~~~~~~SpDG~~l~~~~~~~----------g~~~I~~~dl~~g--~  385 (448)
T PRK04792        320 LIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQNLGGSITPDGRSMIMVNRTN----------GKFNIARQDLETG--A  385 (448)
T ss_pred             EEEEECCCCCceEEEEECCCCCEEEEecCC--CCCcCeeECCCCCEEEEEEecC----------CceEEEEEECCCC--C
Confidence            544432    4688888754  77664211  0111122222344555543221          1236778888777  6


Q ss_pred             eeec
Q 021080          296 WRQV  299 (317)
Q Consensus       296 W~~~  299 (317)
                      .+.+
T Consensus       386 ~~~l  389 (448)
T PRK04792        386 MQVL  389 (448)
T ss_pred             eEEc
Confidence            5554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=82.34  E-value=36  Score=30.31  Aligned_cols=109  Identities=6%  Similarity=-0.122  Sum_probs=63.5

Q ss_pred             eeEEEEeCCCC-----cEEeccCCcc---CCcEEEEcCeEEEEeCcEEEEec--CCc-eEEEeccccccccccEEEEEEC
Q 021080          191 STVQVLDHMGL-----GWTVEDYGWL---QGPMAIVHDSVYLMSHGLIIKQH--RDV-RKVVASASEFRRRIGFAMIGMG  259 (317)
Q Consensus       191 ~~v~~yd~~~~-----~W~~~~~~~~---~~~~~~~~~~ly~~g~~~~~~yd--~~~-W~~v~~~~~~~~r~~~~~~~~~  259 (317)
                      ..+..|+....     ++..+.....   -.+++.+++++.+..|+.++.|+  .++ +.....+..  .-....+.+.+
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~--~~~i~sl~~~~  139 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDS--PFYITSLSVFK  139 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-B--SSSEEEEEEET
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecc--eEEEEEEeccc
Confidence            56888888774     4554432221   23445668898777888877775  444 888777763  22555667778


Q ss_pred             CeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEe
Q 021080          260 DDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL  315 (317)
Q Consensus       260 ~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~  315 (317)
                      +.|++-.-..+-           .+..|+.+..  +-..++.-+.++.- .+|..+
T Consensus       140 ~~I~vgD~~~sv-----------~~~~~~~~~~--~l~~va~d~~~~~v-~~~~~l  181 (321)
T PF03178_consen  140 NYILVGDAMKSV-----------SLLRYDEENN--KLILVARDYQPRWV-TAAEFL  181 (321)
T ss_dssp             TEEEEEESSSSE-----------EEEEEETTTE---EEEEEEESS-BEE-EEEEEE
T ss_pred             cEEEEEEcccCE-----------EEEEEEccCC--EEEEEEecCCCccE-EEEEEe
Confidence            877765333222           4556676555  56666654555553 455544

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=82.14  E-value=41  Score=30.92  Aligned_cols=93  Identities=10%  Similarity=0.023  Sum_probs=48.7

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEeccCCcc--CCcEEEEcCeE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHDSV  222 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~~l  222 (317)
                      .+++.+|..+++.+.+...... .... ...-+| +|++...  ....++.+|..+..+..+.....  ..+...-+++.
T Consensus       258 ~~i~~~d~~~~~~~~l~~~~~~-~~~~-~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~  335 (417)
T TIGR02800       258 PDIYVMDLDGKQLTRLTNGPGI-DTEP-SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDL  335 (417)
T ss_pred             ccEEEEECCCCCEEECCCCCCC-CCCE-EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCE
Confidence            4577777777776666443222 1111 112244 4554433  23478999998888776653222  11222234544


Q ss_pred             EEE-eC----cEEEEecCCc--eEEEe
Q 021080          223 YLM-SH----GLIIKQHRDV--RKVVA  242 (317)
Q Consensus       223 y~~-g~----~~~~~yd~~~--W~~v~  242 (317)
                      +++ ..    ..++.+|...  ++.+.
T Consensus       336 i~~~~~~~~~~~i~~~d~~~~~~~~l~  362 (417)
T TIGR02800       336 IAFVHREGGGFNIAVMDLDGGGERVLT  362 (417)
T ss_pred             EEEEEccCCceEEEEEeCCCCCeEEcc
Confidence            443 32    2788888776  44443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK13684 Ycf48-like protein; Provisional

Probab=81.36  E-value=41  Score=30.33  Aligned_cols=109  Identities=10%  Similarity=0.029  Sum_probs=54.4

Q ss_pred             CCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEE-EeCCCCcEEeccCCcc--CCcEE-EEcCeEEEEeCcEEE
Q 021080          156 EKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQV-LDHMGLGWTVEDYGWL--QGPMA-IVHDSVYLMSHGLII  231 (317)
Q Consensus       156 ~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~-yd~~~~~W~~~~~~~~--~~~~~-~~~~~ly~~g~~~~~  231 (317)
                      .-.+|+.+......  .........+..|++.|....++. .|....+|+.+.....  ...++ .-++++++++.....
T Consensus       160 gG~tW~~~~~~~~g--~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~  237 (334)
T PRK13684        160 GGKNWEALVEDAAG--VVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQI  237 (334)
T ss_pred             CCCCceeCcCCCcc--eEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEE
Confidence            34689987543322  222333444444444442333443 3555668998864322  11222 236788988875444


Q ss_pred             Ee---cCCc-eEEEeccccccccc-cEEEEEE-CCeEEEEeC
Q 021080          232 KQ---HRDV-RKVVASASEFRRRI-GFAMIGM-GDDIYVIGG  267 (317)
Q Consensus       232 ~y---d~~~-W~~v~~~~~~~~r~-~~~~~~~-~~~lyv~GG  267 (317)
                      .+   |... |+.+.. |...... .++++.. ++.+++.|.
T Consensus       238 ~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G~  278 (334)
T PRK13684        238 RFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAGGG  278 (334)
T ss_pred             EEccCCCCCccccccC-CccccccceeeEEEcCCCCEEEEcC
Confidence            44   2223 997643 3111111 2233333 567888775

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=81.34  E-value=45  Score=31.53  Aligned_cols=56  Identities=13%  Similarity=0.053  Sum_probs=29.1

Q ss_pred             ceEEEEEeCCCCceEEEeCCCCCEeecCCCCcc-------ccccCCeeEEEeCCEEEEEcCcC
Q 021080           56 NLLCVCAFDPENLWQLYDPLRDLWITLPVLPSK-------IRHLAHFGVVSTAGKLFVLGGGS  111 (317)
Q Consensus        56 ~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~-------~~~r~~~~~~~~~~~iyv~GG~~  111 (317)
                      ..+|++.|.-..-+-.||.....-++...-+..       ...-.+.+.+..+|.|.|.|-.+
T Consensus        90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t  152 (673)
T KOG4378|consen   90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT  152 (673)
T ss_pred             cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc
Confidence            347777665556777888875544332221110       00123344555667777766543

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=81.26  E-value=35  Score=29.45  Aligned_cols=173  Identities=15%  Similarity=0.064  Sum_probs=90.7

Q ss_pred             CceEEEEEeCCCCceEEEeCC-----CCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccc
Q 021080           55 ENLLCVCAFDPENLWQLYDPL-----RDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE  129 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~-----~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~  129 (317)
                      .+.+|++.+...+.++.|.-.     .++....-.+|.+   -.+.+.++++|.+|---..                   
T Consensus        30 ~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~Lp~~---~~GtG~vVYngslYY~~~~-------------------   87 (250)
T PF02191_consen   30 SEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYKLPYP---WQGTGHVVYNGSLYYNKYN-------------------   87 (250)
T ss_pred             CCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEEEece---eccCCeEEECCcEEEEecC-------------------
Confidence            557888777554566655432     2233332334432   5566677788887744431                   


Q ss_pred             eeEecccCCCCCCCcCCCceeEEeeCCCCc---eeeCCCCC------ccC--CCceEEEEECCEEEEEec-----CceeE
Q 021080          130 VWSYDPVTRGFTSCRKSISQAEMYDPEKDV---WVPIPDLH------RTH--NSACTGVVIGGKVHVLHK-----GLSTV  193 (317)
Q Consensus       130 ~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~---W~~~~~~p------~~~--r~~~~~~~~~g~lyv~gG-----~~~~v  193 (317)
                                       ..++..||..+++   +..++...      ...  ...--.++..+-|+|+-.     ..-.+
T Consensus        88 -----------------s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivv  150 (250)
T PF02191_consen   88 -----------------SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVV  150 (250)
T ss_pred             -----------------CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEE
Confidence                             3566677777664   44443211      110  111223455666777754     12345


Q ss_pred             EEEeCCCC----cEEeccCCccCCcEEEEcCeEEEEeC------cEEEEecCCc-eEEEeccccccccccEEEEEE---C
Q 021080          194 QVLDHMGL----GWTVEDYGWLQGPMAIVHDSVYLMSH------GLIIKQHRDV-RKVVASASEFRRRIGFAMIGM---G  259 (317)
Q Consensus       194 ~~yd~~~~----~W~~~~~~~~~~~~~~~~~~ly~~g~------~~~~~yd~~~-W~~v~~~~~~~~r~~~~~~~~---~  259 (317)
                      -..|+.+-    +|..--.......+-.+-|.||++..      .-.+.||+.+ =.+...++-...-...+++.+   +
T Consensus       151 skld~~tL~v~~tw~T~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~d  230 (250)
T PF02191_consen  151 SKLDPETLSVEQTWNTSYPKRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRD  230 (250)
T ss_pred             EeeCcccCceEEEEEeccCchhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCC
Confidence            55676644    46643222123345567889999874      3457899876 222223331122234556666   4


Q ss_pred             CeEEEEe
Q 021080          260 DDIYVIG  266 (317)
Q Consensus       260 ~~lyv~G  266 (317)
                      .+||+..
T Consensus       231 k~LY~wd  237 (250)
T PF02191_consen  231 KKLYAWD  237 (250)
T ss_pred             CeEEEEE
Confidence            6788873

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PRK04922 tolB translocation protein TolB; Provisional

Probab=80.25  E-value=51  Score=30.79  Aligned_cols=58  Identities=7%  Similarity=-0.005  Sum_probs=29.8

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEecc
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVED  207 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~  207 (317)
                      .+++++|..+++-+.+..-... .... ...-+| +|++...  ....++.+|..++..+.+.
T Consensus       272 ~~Iy~~d~~~g~~~~lt~~~~~-~~~~-~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt  332 (433)
T PRK04922        272 PEIYVMDLGSRQLTRLTNHFGI-DTEP-TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT  332 (433)
T ss_pred             ceEEEEECCCCCeEECccCCCC-ccce-EECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence            4567777777765555432211 1111 222344 3544432  2346778888777666553

>PLN00181 protein SPA1-RELATED; Provisional

Probab=80.24  E-value=73  Score=32.51  Aligned_cols=57  Identities=11%  Similarity=-0.096  Sum_probs=30.5

Q ss_pred             CCEEEEEecCceeEEEEeCCCCc--EEeccCCccCC-cEEEEcCeEEEEeC--cEEEEecCC
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQG-PMAIVHDSVYLMSH--GLIIKQHRD  236 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~-~~~~~~~~ly~~g~--~~~~~yd~~  236 (317)
                      ++.+++.|+....+..||..+..  ...+....... .+...++..++.++  +.+..+|..
T Consensus       629 ~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        629 SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence            57777888767789999987643  22222111111 11222444444443  567777754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	317
2vpj_A	301	Crystal Structure Of The Kelch Domain Of Human Klhl		6e-05

>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 30/178 (16%)
Query: 46  KARQEVGSSENLLCVCAF----DPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTA 101
           + R  +G++E LL V  F     P ++ + YDP    W  LP +  K R++A    VS  
Sbjct: 6   RTRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVAS---VSLH 62
Query: 102 GKLFVLGGGS-----DAVDPL--TGDQDGSF-------------ATNEVWSYDPVTRGFT 141
            +++V+GG        +V+ L  T D+DG +                 +     V+ GF 
Sbjct: 63  DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFD 122
Query: 142 SCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHM 199
             R+  S  E YDP  D W  + D+      A  G+V+   V     G   + +L+ +
Sbjct: 123 GSRRHTSM-ERYDPNIDQWSMLGDMQTAREGA--GLVVASGVIYCLGGYDGLNILNSV 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	317
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	9e-21
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	6e-12
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	2e-09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-19
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-12
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	4e-12
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-08
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	5e-06
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	4e-18
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-12
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	3e-09
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	7e-18
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-13
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-09
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	7e-04
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-16
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-14
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-09
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	8e-16
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-12
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	9e-09
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-04
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	5e-14
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-09

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 89.3 bits (222), Expect = 9e-21
 Identities = 58/297 (19%), Positives = 91/297 (30%), Gaps = 95/297 (31%)

Query: 46  KARQEVGSSENLLCV--CAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGK 103
           + R  +   + ++ V   A       + YD   + W  +  LPS        G+V  AG 
Sbjct: 7   RLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPS---RRCRAGMVYMAGL 63

Query: 104 LFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVT-------------RGFTSC------- 143
           +F +GG            +GS     V SYDPV                  +        
Sbjct: 64  VFAVGG-----------FNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLY 112

Query: 144 -------RKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV------VIGGKVHVLHKGL 190
                     +S  E Y+ + + W  +  ++   +S   GV       +GG      + L
Sbjct: 113 AVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCL 172

Query: 191 STVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRR 250
           STV+  +     WT                                    +A  S   RR
Sbjct: 173 STVECYNATTNEWT-----------------------------------YIAEMST--RR 195

Query: 251 IGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRG 307
            G  +  + + +Y +GG  GP            V+V         WRQV+ M  CR 
Sbjct: 196 SGAGVGVLNNLLYAVGGHDGPLV-------RKSVEVYDPTTN--AWRQVADMNMCRR 243

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 45/158 (28%)

Query: 72  YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
           Y+   + W  +  + ++ R     GV    G L+ +GG          D       + V 
Sbjct: 129 YNIKSNEWFHVAPMNTR-RS--SVGVGVVGGLLYAVGGY---------DVASRQCLSTVE 176

Query: 132 SYDPVT------------RGFTSC---------------RKSISQAEMYDPEKDVWVPIP 164
            Y+  T            R                           E+YDP  + W  + 
Sbjct: 177 CYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA 236

Query: 165 DLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLD 197
           D++           + G ++V+        L++V+  +
Sbjct: 237 DMNMCR-RNAGVCAVNGLLYVVGGDDGSCNLASVEYYN 273

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 41/141 (29%)

Query: 70  QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
           + Y+   + W  +  + ++ R  +  GV      L+ +GG            DG      
Sbjct: 176 ECYNATTNEWTYIAEMSTR-R--SGAGVGVLNNLLYAVGG-----------HDGPLVRKS 221

Query: 130 VWSYDPVT------------RGFTSC---------------RKSISQAEMYDPEKDVWVP 162
           V  YDP T            R                      +++  E Y+P  D W  
Sbjct: 222 VEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV 281

Query: 163 IPDLHRTHNSACTGVVIGGKV 183
           +     T  S     VI  ++
Sbjct: 282 VSSCMSTGRSYAGVTVIDKRL 302

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 85.5 bits (212), Expect = 2e-19
 Identities = 43/270 (15%), Positives = 76/270 (28%), Gaps = 89/270 (32%)

Query: 70  QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
           + Y+P    W+ L  L    R           G L+ +GG +          DG+  ++ 
Sbjct: 42  EAYNPSNGTWLRLADLQVP-RS--GLAGCVVGGLLYAVGGRN-------NSPDGNTDSSA 91

Query: 130 VWSYDPVT-------------RGFTSC--------------RKSISQAEMYDPEKDVWVP 162
           +  Y+P+T                                     +  E Y+PE+D W  
Sbjct: 92  LDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL 151

Query: 163 IPDLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLDHMGLGWTVEDYGWLQGPMAI 217
           +  +  T        V+   ++ +        L++ +        W       +   M  
Sbjct: 152 VAPML-TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR------MITAMNT 204

Query: 218 VHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWD 277
                                           R G  +  + + IY  GG  G D+    
Sbjct: 205 -------------------------------IRSGAGVCVLHNCIYAAGGYDGQDQ---- 229

Query: 278 IKPMSDVDVLTVGAERPTWRQVSPMTRCRG 307
              ++ V+   V  E  TW  V+PM   R 
Sbjct: 230 ---LNSVERYDVETE--TWTFVAPMKHRRS 254

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 47/158 (29%)

Query: 72  YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
           Y+P RD W  +  + ++ R     GV      L+ +GG            DG+   N   
Sbjct: 142 YEPERDEWHLVAPMLTR-RI--GVGVAVLNRLLYAVGG-----------FDGTNRLNSAE 187

Query: 132 SYDPVT------------RGFTSC---------------RKSISQAEMYDPEKDVWVPIP 164
            Y P              R                    +  ++  E YD E + W  + 
Sbjct: 188 CYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247

Query: 165 DLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLD 197
            +     SA    V  G+++VL     H  L +V+  D
Sbjct: 248 PMKHRR-SALGITVHQGRIYVLGGYDGHTFLDSVECYD 284

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 47/268 (17%), Positives = 76/268 (28%), Gaps = 95/268 (35%)

Query: 72  YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
           Y+P+ + W     +    R+    GV    G ++ +GG             G    N V 
Sbjct: 95  YNPMTNQWSPCAPMSVP-RN--RIGVGVIDGHIYAVGG-----------SHGCIHHNSVE 140

Query: 132 SYDPVTR----------------------------GFTSCRKSISQAEMYDPEKDVWVPI 163
            Y+P                               GF      ++ AE Y PE++ W  I
Sbjct: 141 RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMI 199

Query: 164 PDLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV 218
             +  T  S     V+   ++          L++V+  D     WT         PM   
Sbjct: 200 TAM-NTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWT------FVAPMKH- 251

Query: 219 HDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDI 278
                                         RR    +      IYV+GG      ++   
Sbjct: 252 ------------------------------RRSALGITVHQGRIYVLGG------YDGH- 274

Query: 279 KPMSDVDVLTVGAERPTWRQVSPMTRCR 306
             +  V+      +  TW +V+ MT  R
Sbjct: 275 TFLDSVECYDP--DTDTWSEVTRMTSGR 300

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 24/135 (17%), Positives = 37/135 (27%), Gaps = 41/135 (30%)

Query: 70  QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
           + Y P R+ W  +  + +  R  +  GV      ++  GG            DG    N 
Sbjct: 187 ECYYPERNEWRMITAMNTI-R--SGAGVCVLHNCIYAAGG-----------YDGQDQLNS 232

Query: 130 VWSYDPVT------------RGFTSC---------------RKSISQAEMYDPEKDVWVP 162
           V  YD  T            R                       +   E YDP+ D W  
Sbjct: 233 VERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292

Query: 163 IPDLHRTHNSACTGV 177
           +  +    +     V
Sbjct: 293 VTRMTSGRSGVGVAV 307

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 33/178 (18%), Positives = 54/178 (30%), Gaps = 68/178 (38%)

Query: 144 RKSISQAEMYDPEKDVWVPIPDL--HRTHNSACTGVVIGGKVHVL---------HKGLST 192
           R+S+S  E Y+P    W+ + DL   R+  + C   V+GG ++ +         +   S 
Sbjct: 35  RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGC---VVGGLLYAVGGRNNSPDGNTDSSA 91

Query: 193 VQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIG 252
           +   + M   W+                                     A  S    R  
Sbjct: 92  LDCYNPMTNQWS-----------------------------------PCAPMSV--PRNR 114

Query: 253 FAMIGMGDDIYVIGGVIGPDRWN----WDIKPMSDVDVLTVGAERPTWRQVSPMTRCR 306
             +  +   IY +GG  G    N    ++  P  D            W  V+PM   R
Sbjct: 115 IGVGVIDGHIYAVGGSHGCIHHNSVERYE--PERD-----------EWHLVAPMLTRR 159

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 82.0 bits (203), Expect = 4e-18
 Identities = 40/292 (13%), Positives = 73/292 (25%), Gaps = 99/292 (33%)

Query: 53  SSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSD 112
             +  + +         + ++P    W  +     K R       V     +++LGG   
Sbjct: 10  KHDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK-RR--DAACVFWDNVVYILGG--- 63

Query: 113 AVDPLTGDQDGSFATNEVWSYDPVTR----------------------------GFTSCR 144
                       F    +  Y+ V                              G     
Sbjct: 64  ---------SQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGN 114

Query: 145 KSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVL---------HKGLSTVQV 195
            ++   E YD   + W   P +  T   +   V   G ++V           + L++ +V
Sbjct: 115 SALYLFECYDTRTESWHTKPSML-TQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEV 173

Query: 196 LDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAM 255
            D     WT         PM                                  R    +
Sbjct: 174 YDPATETWT------ELCPMIE-------------------------------ARKNHGL 196

Query: 256 IGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRG 307
           + + D I+ +GG  G          + +V+   +      W+ VSPM     
Sbjct: 197 VFVKDKIFAVGGQNGL-------GGLDNVEYYDIKLN--EWKMVSPMPWKGV 239

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 38/278 (13%), Positives = 66/278 (23%), Gaps = 96/278 (34%)

Query: 72  YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
           Y+ ++D W +    P+  R        +  GK++  GG       L              
Sbjct: 75  YNVVKDSWYSKLGPPTP-RD--SLAACAAEGKIYTSGGSEVGNSAL----------YLFE 121

Query: 132 SYDPVTR-------------------------------GFTSCRKSISQAEMYDPEKDVW 160
            YD  T                                G     + ++  E+YDP  + W
Sbjct: 122 CYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181

Query: 161 VPIPDLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLDHMGLGWTVEDYGWLQGPM 215
             +  +          V +  K+  +       GL  V+  D     W       +  PM
Sbjct: 182 TELCPM-IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWK------MVSPM 234

Query: 216 AIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWN 275
                                            + +      +G  +YV+ G  G  R  
Sbjct: 235 PW-------------------------------KGVTVKCAAVGSIVYVLAGFQGVGR-- 261

Query: 276 WDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCT 313
                +  +       E   W   S +     T     
Sbjct: 262 -----LGHILEYNT--ETDKWVANSKVRAFPVTSCLIC 292

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 25/135 (18%), Positives = 39/135 (28%), Gaps = 41/135 (30%)

Query: 72  YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
           YDP  + W  L  +    R   + G+V    K+F +GG           Q+G    + V 
Sbjct: 174 YDPATETWTELCPMIEA-R--KNHGLVFVKDKIFAVGG-----------QNGLGGLDNVE 219

Query: 132 SYDPVT------------RGFTSC---------------RKSISQAEMYDPEKDVWVPIP 164
            YD                    C                  +     Y+ E D WV   
Sbjct: 220 YYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANS 279

Query: 165 DLHRTHNSACTGVVI 179
            +     ++C   V+
Sbjct: 280 KVRAFPVTSCLICVV 294

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 81.2 bits (201), Expect = 7e-18
 Identities = 58/295 (19%), Positives = 89/295 (30%), Gaps = 100/295 (33%)

Query: 51  VGSSENLLCVCAFDPENLW----QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFV 106
           +G++E LL V  F  +       + YDP    W  LP +  K     +   VS   +++V
Sbjct: 11  LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK---RRYVASVSLHDRIYV 67

Query: 107 LGGGSDAVDPLTGDQDGSFATNEVWSYDPVT----------------RGFTSC------- 143
           +GG            DG    + V   D                       +        
Sbjct: 68  IGG-----------YDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIY 116

Query: 144 -------RKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVL-----HKGLS 191
                   +  +  E YDP  D W  + D+  T       VV  G ++ L        L+
Sbjct: 117 VSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ-TAREGAGLVVASGVIYCLGGYDGLNILN 175

Query: 192 TVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRI 251
           +V+  D     WT         PMA                                +R 
Sbjct: 176 SVEKYDPHTGHWT------NVTPMAT-------------------------------KRS 198

Query: 252 GFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCR 306
           G  +  + D IYV+GG  G          +S V+   +     +W  V+ MT  R
Sbjct: 199 GAGVALLNDHIYVVGGFDGTAH-------LSSVEAYNI--RTDSWTTVTSMTTPR 244

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 47/158 (29%)

Query: 72  YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
           YDP  D W  L  + +  R     G+V  +G ++ LGG            DG    N V 
Sbjct: 133 YDPNIDQWSMLGDMQTA-RE--GAGLVVASGVIYCLGG-----------YDGLNILNSVE 178

Query: 132 SYDPVT------------RGFTSC---------------RKSISQAEMYDPEKDVWVPIP 164
            YDP T            R                       +S  E Y+   D W  + 
Sbjct: 179 KYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238

Query: 165 DLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLD 197
            +           V+ G+++ +     +  LS+++  D
Sbjct: 239 SMTTPR-CYVGATVLRGRLYAIAGYDGNSLLSSIECYD 275

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 38/271 (14%), Positives = 70/271 (25%), Gaps = 98/271 (36%)

Query: 72  YDPLRD---LWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATN 128
            D   D   +W ++  +  + R     G  +    ++V GG            DGS    
Sbjct: 83  LDYTADEDGVWYSVAPMNVR-RG--LAGATTLGDMIYVSGG-----------FDGSRRHT 128

Query: 129 EVWSYDPVTR----------------------------GFTSCRKSISQAEMYDPEKDVW 160
            +  YDP                               G+      ++  E YDP    W
Sbjct: 129 SMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGHW 187

Query: 161 VPIPDLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLDHMGLGWTVEDYGWLQGPM 215
             +  +  T  S     ++   ++V+        LS+V+  +     WT          M
Sbjct: 188 TNVTPM-ATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV------TSM 240

Query: 216 AIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWN 275
                                             R       +   +Y I G      ++
Sbjct: 241 TT-------------------------------PRCYVGATVLRGRLYAIAG------YD 263

Query: 276 WDIKPMSDVDVLTVGAERPTWRQVSPMTRCR 306
            +   +S ++         +W  V+ M   R
Sbjct: 264 GN-SLLSSIECYDP--IIDSWEVVTSMGTQR 291

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 43/135 (31%)

Query: 70  QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
           + YDP    W  +  + +K R  +  GV      ++V+GG            DG+   + 
Sbjct: 178 EKYDPHTGHWTNVTPMATK-R--SGAGVALLNDHIYVVGG-----------FDGTAHLSS 223

Query: 130 VWSYDPVTRGFTSC---------------------------RKSISQAEMYDPEKDVWVP 162
           V +Y+  T  +T+                               +S  E YDP  D W  
Sbjct: 224 VEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283

Query: 163 IPDLH--RTHNSACT 175
           +  +   R     C 
Sbjct: 284 VTSMGTQRCDAGVCV 298

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 249 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVL-TVGAERPTWRQVSPMTRCRG 307
           +R   A + + D IYVIGG  G  R +        V+ L     E   W  V+PM   RG
Sbjct: 52  KRRYVASVSLHDRIYVIGGYDGRSRLS-------SVECLDYTADEDGVWYSVAPMNVRRG 104

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 36/295 (12%), Positives = 72/295 (24%), Gaps = 93/295 (31%)

Query: 48  RQEVGSSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVL 107
           R  +   + +L V           YDP+ +      +     R+  H  +V+   +++V+
Sbjct: 9   RHGMFVKDLILLVNDTAAV----AYDPMENECYLTALAEQIPRN--HSSIVTQQNQVYVV 62

Query: 108 GGGSDAVDPLTGDQDGSFATNEVWSYDPVTR----------------------------G 139
           GG          +       +  +  D V+                             G
Sbjct: 63  GGLYV-----DEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAG 117

Query: 140 FTSC-RKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVL------HKGLST 192
                  S+     YDP    W  + +L          +   G ++ L       K  + 
Sbjct: 118 KDLQTEASLDSVLCYDPVAAKWSEVKNLP-IKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176

Query: 193 VQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIG 252
           V + +     W                                     +A       R  
Sbjct: 177 VFIYNPKKGDWK-----------------------------------DLAPMKT--PRSM 199

Query: 253 FAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRG 307
           F +      I + GGV             + V+   +  +   W  ++   + R 
Sbjct: 200 FGVAIHKGKIVIAGGVTED-------GLSASVEAFDL--KTNKWEVMTEFPQERS 245

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 43/268 (16%), Positives = 76/268 (28%), Gaps = 83/268 (30%)

Query: 72  YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
            D +   W+ LP LPS  R    FG+     K++V+ G          D     + + V 
Sbjct: 83  LDNVSSEWVGLPPLPSA-RC--LFGLGEVDDKIYVVAGK---------DLQTEASLDSVL 130

Query: 132 SYDPVTR----------------------------GFTSCRKSISQAEMYDPEKDVWVPI 163
            YDPV                              G T  +K  ++  +Y+P+K  W  +
Sbjct: 131 CYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL 190

Query: 164 PDLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV 218
             +  T  S     +  GK+ +          ++V+  D     W V             
Sbjct: 191 APMK-TPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM------TEFPQ- 242

Query: 219 HDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDI 278
                                          R   +++ +   +Y IGG       + + 
Sbjct: 243 ------------------------------ERSSISLVSLAGSLYAIGGFAMIQLESKEF 272

Query: 279 KPMSDVDVLTVGAERPTWRQVSPMTRCR 306
            P    D+     ++  W  +    R  
Sbjct: 273 APTEVNDIWKYEDDKKEWAGMLKEIRYA 300

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 28/116 (24%)

Query: 72  YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
           +D   + W  +   P + R      +VS AG L+ +GG                  ++ +
Sbjct: 227 FDLKTNKWEVMTEFPQE-RS--SISLVSLAGSLYAIGG-----------FAMIQLESKEF 272

Query: 132 SYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLH 187
           +   V           +    Y+ +K  W  +    R  + A     +  ++++  
Sbjct: 273 APTEV-----------NDIWKYEDDKKEWAGMLKEIRYASGAS---CLATRLNLFK 314

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 75.9 bits (187), Expect = 8e-16
 Identities = 45/269 (16%), Positives = 77/269 (28%), Gaps = 82/269 (30%)

Query: 72  YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
           +D L   W+ +P LPS  R    FG+      ++V+GG           +DG    + V 
Sbjct: 72  FDHLDSEWLGMPPLPSP-RC--LFGLGEALNSIYVVGGREI--------KDGERCLDSVM 120

Query: 132 SYDPVTR----------------------------GFTSCRKSISQAEMYDPEKDVWVPI 163
            YD ++                             G  S RK +++  +YDP+K  W  +
Sbjct: 121 CYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL 180

Query: 164 PDLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV 218
             +  T  S     V  G++ V          S+ +V       W               
Sbjct: 181 APMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF------EAFPQ- 232

Query: 219 HDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDI 278
                                          R   +++ +   +Y IGG    +  + ++
Sbjct: 233 ------------------------------ERSSLSLVSLVGTLYAIGGFATLETESGEL 262

Query: 279 KPMSDVDVLTVGAERPTWRQVSPMTRCRG 307
            P    D+     E   W  V        
Sbjct: 263 VPTELNDIWRYNEEEKKWEGVLREIAYAA 291

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 38/267 (14%), Positives = 67/267 (25%), Gaps = 80/267 (29%)

Query: 72  YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
           YDP  +      +     ++  H  +V+   ++FV GG          D      +    
Sbjct: 18  YDPAANECYCASLSSQVPKN--HVSLVTKENQVFVAGGLF-----YNEDNKEDPMSAYFL 70

Query: 132 SYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLH--RTHNSACTGVVIGGKVHVL--- 186
                                +D     W+ +P L   R              ++V+   
Sbjct: 71  --------------------QFDHLDSEWLGMPPLPSPRCLFGLG---EALNSIYVVGGR 107

Query: 187 -----HKGLSTVQVLDHMGLGWTVEDYGWLQGPM---------AIVHDSVYLMSHGLIIK 232
                 + L +V   D +   W   D      P+             D VY++  G    
Sbjct: 108 EIKDGERCLDSVMCYDRLSFKWGESD------PLPYVVYGHTVLSHMDLVYVI--GGKGS 159

Query: 233 QHRDVRKV------------VASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKP 280
             + + K+            +A       R  F        I V  GV            
Sbjct: 160 DRKCLNKMCVYDPKKFEWKELAPMQT--ARSLFGATVHDGRIIVAAGVTDT-------GL 210

Query: 281 MSDVDVLTVGAERPTWRQVSPMTRCRG 307
            S  +V ++      W       + R 
Sbjct: 211 TSSAEVYSI--TDNKWAPFEAFPQERS 235

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 28/115 (24%)

Query: 72  YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
           Y    + W      P + R      +VS  G L+ +GG +                    
Sbjct: 217 YSITDNKWAPFEAFPQE-RS--SLSLVSLVGTLYAIGGFA-------------------T 254

Query: 132 SYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVL 186
                     +    I     Y+ E+  W  +         A     +  +++VL
Sbjct: 255 LETESGELVPTELNDI---WRYNEEEKKWEGVLREIAYAAGAT---FLPVRLNVL 303

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 23/163 (14%), Positives = 39/163 (23%), Gaps = 44/163 (26%)

Query: 150 AEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDY- 208
           A  YDP  +         +   +  + V    +V V   GL   +      +      + 
Sbjct: 15  AVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVA-GGLFYNEDNKEDPMSAYFLQFD 73

Query: 209 ----GWLQG-PMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIY 263
                WL   P+                                  R  F +    + IY
Sbjct: 74  HLDSEWLGMPPLPS-------------------------------PRCLFGLGEALNSIY 102

Query: 264 VIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCR 306
           V+GG    D        +  V      +    W +  P+    
Sbjct: 103 VVGGREIKDGER----CLDSVMCYDRLSF--KWGESDPLPYVV 139

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 70.7 bits (173), Expect = 5e-14
 Identities = 36/251 (14%), Positives = 65/251 (25%), Gaps = 61/251 (24%)

Query: 72  YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
                  W  L   P   R           G L+V GG           +  +   N+V 
Sbjct: 38  TQAKDKKWTALAAFPGGPRD--QATSAFIDGNLYVFGGIGK------NSEGLTQVFNDVH 89

Query: 132 SYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVL----- 186
                                Y+P+ + WV +        +     V  GK +V      
Sbjct: 90  --------------------KYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQ 129

Query: 187 HKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGL-IIKQHRDVR------- 238
           +      + L+  G   T           AI   + +           ++ +        
Sbjct: 130 NIFNGYFEDLNEAGKDST-----------AIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ 178

Query: 239 --KVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTW 296
                  +  +    G A++  GD  ++I G   P            V  L        W
Sbjct: 179 QWSYAGESPWYGTA-GAAVVNKGDKTWLINGEAKPGLR------TDAVFELDFTGNNLKW 231

Query: 297 RQVSPMTRCRG 307
            +++P++   G
Sbjct: 232 NKLAPVSSPDG 242

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 27/236 (11%), Positives = 55/236 (23%), Gaps = 52/236 (22%)

Query: 67  NLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFA 126
                +DP    W      P      A   VV+   K +++ G          +      
Sbjct: 168 KFLLSFDPSTQQWSYAGESPWYGT--AGAAVVNKGDKTWLING----------EAKPGLR 215

Query: 127 TNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDL-HRTHNSACTGVVIGGKVHV 185
           T+ V+                     +      W  +  +      +     +    +  
Sbjct: 216 TDAVFEL------------------DFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIF 257

Query: 186 LHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASAS 245
                         G           Q      H+ +       I   H          S
Sbjct: 258 -------------AGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS 304

Query: 246 EFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSP 301
           +   R     +   + + +IGG           K ++D  ++TV   + T + +  
Sbjct: 305 Q--GRAYGVSLPWNNSLLIIGGE------TAGGKAVTDSVLITVKDNKVTVQNLEH 352

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.98
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.98
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.97
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.97
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.97
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.96
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.93
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.9
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.75
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.72
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.69
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.54
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.12
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.03
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.0
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.99
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.88
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.84
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.83
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.81
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.7
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.65
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.5
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.47
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.98
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.91
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.85
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.79
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.68
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.63
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.5
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	96.37
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	96.26
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.24
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.13
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.12
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.12
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.11
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.02
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	95.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.93
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	95.8
3jrp_A	379	Fusion protein of protein transport protein SEC13	95.75
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.73
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.72
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.71
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.67
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.65
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.61
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.29
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	95.21
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.19
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	95.18
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	95.14
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	95.08
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	95.02
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	94.81
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	94.79
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	94.51
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	94.48
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	94.37
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	94.36
3ow8_A	321	WD repeat-containing protein 61; structural genomi	94.33
4a2l_A	795	BT_4663, two-component system sensor histidine kin	94.2
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	94.06
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.04
3jro_A	753	Fusion protein of protein transport protein SEC13	94.0
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	93.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	93.83
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	93.73
3oyo_A	225	Hemopexin fold protein CP4; seeds, plant protein;	93.61
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	93.61
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.45
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	93.44
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	93.41
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	93.33
1hxn_A	219	Hemopexin, HPX; heme, binding protein; 1.80A {Oryc	93.25
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	93.2
3ow8_A	321	WD repeat-containing protein 61; structural genomi	93.2
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	93.16
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	92.99
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	92.98
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	92.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	92.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	92.92
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	92.86
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	92.84
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	92.83
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	92.75
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	92.74
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	92.74
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	92.34
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	92.3
4a2l_A	795	BT_4663, two-component system sensor histidine kin	92.27
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	92.22
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	92.2
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	91.84
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	91.81
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	91.74
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	91.59
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	91.58
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	91.56
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	91.54
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	91.38
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	91.36
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	91.32
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	91.24
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.16
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	91.12
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	91.06
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	90.98
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	90.76
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	90.71
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	90.36
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	90.3
3oyo_A	225	Hemopexin fold protein CP4; seeds, plant protein;	90.17
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	90.06
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	90.05
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	90.04
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	90.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	89.86
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	89.75
3jro_A	753	Fusion protein of protein transport protein SEC13	89.75
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	89.56
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	89.51
3v65_B	386	Low-density lipoprotein receptor-related protein;	89.51
3ott_A	758	Two-component system sensor histidine kinase; beta	89.45
3ott_A	758	Two-component system sensor histidine kinase; beta	89.36
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	89.24
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	89.19
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	89.17
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	89.08
3v65_B	386	Low-density lipoprotein receptor-related protein;	88.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	88.84
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	88.83
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	88.79
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	88.66
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	88.64
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	88.6
3lp9_A	227	LS-24; SEED albumin, plant protein; HET: SPM; 2.20	88.59
1hxn_A	219	Hemopexin, HPX; heme, binding protein; 1.80A {Oryc	88.57
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	88.38
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	88.17
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	87.98
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	87.82
1gen_A	218	Gelatinase A; hydrolase, hemopexin domain, metallo	87.27
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	87.25
3lp9_A	227	LS-24; SEED albumin, plant protein; HET: SPM; 2.20	87.17
3ba0_A	365	Macrophage metalloelastase; FULL-length MMP-12, he	87.15
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	87.04
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	86.99
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	86.48
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	86.29
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	86.23
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	86.17
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	86.12
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	86.03
2p4o_A	306	Hypothetical protein; putative lactonase, structur	85.91
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	85.87
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	85.8
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	85.78
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	85.68
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	85.64
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	84.94
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	84.88
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	84.88
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	84.88
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	84.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	84.83
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	84.77
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	84.42
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	84.38
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	84.38
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	84.34
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	83.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	83.53
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	83.4
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	83.2
3v9f_A	781	Two-component system sensor histidine kinase/RESP	83.1
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	82.75
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	82.61
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	82.59
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	82.59
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	82.14
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	82.12
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	81.42
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	81.31
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	81.31
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	81.2
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	81.03
2pm7_B	297	Protein transport protein SEC13, protein transport	80.91

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.7e-38  Score=280.95  Aligned_cols=236  Identities=22%  Similarity=0.321  Sum_probs=204.3

Q ss_pred             cCceEEEEEeCC---CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccce
Q 021080           54 SENLLCVCAFDP---ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV  130 (317)
Q Consensus        54 ~~~~l~v~gg~~---~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~  130 (317)
                      .++.||++||..   .+++++||+.+++|..++++|.+   |.++++++++++|||+||..+.           ...+++
T Consensus        14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~lyv~GG~~~~-----------~~~~~~   79 (302)
T 2xn4_A           14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSR---RCRAGMVYMAGLVFAVGGFNGS-----------LRVRTV   79 (302)
T ss_dssp             -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSC---CBSCEEEEETTEEEEESCBCSS-----------SBCCCE
T ss_pred             CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcc---cccceEEEECCEEEEEeCcCCC-----------ccccce
Confidence            367899999943   57899999999999999999985   9999999999999999997643           256889


Q ss_pred             eEecccCC---------------------------CCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEE
Q 021080          131 WSYDPVTR---------------------------GFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKV  183 (317)
Q Consensus       131 ~~~d~~~~---------------------------G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~l  183 (317)
                      ++||+.++                           |........+++++||+.+++|+.+++||.+ |..+++++++++|
T Consensus        80 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~i  158 (302)
T 2xn4_A           80 DSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR-RSSVGVGVVGGLL  158 (302)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEE
T ss_pred             EEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc-ccCceEEEECCEE
Confidence            99999887                           2222234568999999999999999999999 9999999999999


Q ss_pred             EEEecC-------ceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC-------cEEEEecCCc--eEEEecc
Q 021080          184 HVLHKG-------LSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-------GLIIKQHRDV--RKVVASA  244 (317)
Q Consensus       184 yv~gG~-------~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~-------~~~~~yd~~~--W~~v~~~  244 (317)
                      |++||.       .+.+++||+.+++|+.+++++.   .+.+++++++||++||       +.++.||+++  |+.++.+
T Consensus       159 yv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  238 (302)
T 2xn4_A          159 YAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM  238 (302)
T ss_dssp             EEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC
T ss_pred             EEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC
Confidence            999991       5789999999999999987765   5677889999999997       4799999887  9999998


Q ss_pred             ccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecc-cCCCCCCceeeeeEee
Q 021080          245 SEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVS-PMTRCRGTILGCTQLR  316 (317)
Q Consensus       245 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~-~~p~~~~~~~~~~~~~  316 (317)
                      |  ..|.+++++.++++||++||.+..       ...+++++||++++  +|+.++ +||.+|.. |++++++
T Consensus       239 ~--~~r~~~~~~~~~~~i~v~GG~~~~-------~~~~~v~~yd~~~~--~W~~~~~~~~~~r~~-~~~~~~~  299 (302)
T 2xn4_A          239 N--MCRRNAGVCAVNGLLYVVGGDDGS-------CNLASVEYYNPTTD--KWTVVSSCMSTGRSY-AGVTVID  299 (302)
T ss_dssp             S--SCCBSCEEEEETTEEEEECCBCSS-------SBCCCEEEEETTTT--EEEECSSCCSSCCBS-CEEEEEE
T ss_pred             C--CccccCeEEEECCEEEEECCcCCC-------cccccEEEEcCCCC--eEEECCcccCccccc-ceEEEec
Confidence            8  678889999999999999998654       35789999999999  999997 89999998 7888774

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1.2e-38  Score=282.92  Aligned_cols=239  Identities=19%  Similarity=0.325  Sum_probs=205.4

Q ss_pred             cCceEEEEEeC---CCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccce
Q 021080           54 SENLLCVCAFD---PENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV  130 (317)
Q Consensus        54 ~~~~l~v~gg~---~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~  130 (317)
                      .++.||++||.   ..+++++||+.+++|..++++|.+   |.++++++++++|||+||.....       .+....+++
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~lyv~GG~~~~~-------~~~~~~~~~   92 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP---RSGLAGCVVGGLLYAVGGRNNSP-------DGNTDSSAL   92 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC---CBSCEEEEETTEEEEECCEEEET-------TEEEECCCE
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcc---cccceEEEECCEEEEECCCcCCC-------CCCeecceE
Confidence            48899999993   468999999999999999999886   99999999999999999973100       012356889


Q ss_pred             eEecccCC---------------------------CCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEE
Q 021080          131 WSYDPVTR---------------------------GFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKV  183 (317)
Q Consensus       131 ~~~d~~~~---------------------------G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~l  183 (317)
                      ++||+.++                           |........+++++||+.+++|+.++++|.+ |..+++++++++|
T Consensus        93 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i  171 (308)
T 1zgk_A           93 DCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-RIGVGVAVLNRLL  171 (308)
T ss_dssp             EEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-CBSCEEEEETTEE
T ss_pred             EEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc-ccceEEEEECCEE
Confidence            99999887                           3322234578999999999999999999999 9999999999999


Q ss_pred             EEEec-----CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC-------cEEEEecCCc--eEEEecccc
Q 021080          184 HVLHK-----GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-------GLIIKQHRDV--RKVVASASE  246 (317)
Q Consensus       184 yv~gG-----~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~-------~~~~~yd~~~--W~~v~~~~~  246 (317)
                      |++||     ..+.+++||+.+++|+.+++++.   .+.+++++++||++||       +.++.||+++  |+++..+| 
T Consensus       172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-  250 (308)
T 1zgk_A          172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK-  250 (308)
T ss_dssp             EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS-
T ss_pred             EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC-
Confidence            99999     25789999999999999987765   5677889999999997       5799999877  99999888 


Q ss_pred             ccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEe
Q 021080          247 FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL  315 (317)
Q Consensus       247 ~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~  315 (317)
                       .+|..++++.++++||++||.+..       ...+++++||++++  +|+.+++||.+|.. ++||+|
T Consensus       251 -~~r~~~~~~~~~~~i~v~GG~~~~-------~~~~~v~~yd~~~~--~W~~~~~~p~~r~~-~~~~~l  308 (308)
T 1zgk_A          251 -HRRSALGITVHQGRIYVLGGYDGH-------TFLDSVECYDPDTD--TWSEVTRMTSGRSG-VGVAVT  308 (308)
T ss_dssp             -SCCBSCEEEEETTEEEEECCBCSS-------CBCCEEEEEETTTT--EEEEEEECSSCCBS-CEEEEC
T ss_pred             -CCccceEEEEECCEEEEEcCcCCC-------cccceEEEEcCCCC--EEeecCCCCCCccc-ceeEeC
Confidence             688899999999999999998764       36789999999999  99999999999998 677764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=4.5e-38  Score=278.82  Aligned_cols=233  Identities=15%  Similarity=0.202  Sum_probs=205.6

Q ss_pred             CceEEEEEeCC-CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           55 ENLLCVCAFDP-ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        55 ~~~l~v~gg~~-~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      .+.||++||.. .++++.||+.+++|..++++|.+   |.+|++++++++|||+||...            ...+++++|
T Consensus        11 ~~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~lyv~GG~~~------------~~~~~~~~~   75 (306)
T 3ii7_A           11 HDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK---RRDAACVFWDNVVYILGGSQL------------FPIKRMDCY   75 (306)
T ss_dssp             CCEEEEEECCSSTTSEEEEETTTTEEEECCCCSCC---CBSCEEEEETTEEEEECCBSS------------SBCCEEEEE
T ss_pred             cceEEEEeCCCCCceEEEecCCCCCEecCCCCCcc---cceeEEEEECCEEEEEeCCCC------------CCcceEEEE
Confidence            47899998854 78999999999999999999985   999999999999999999762            267899999


Q ss_pred             cccCC----------------------------CCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEE
Q 021080          134 DPVTR----------------------------GFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHV  185 (317)
Q Consensus       134 d~~~~----------------------------G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv  185 (317)
                      |+.++                            |.+......+++++||+.+++|+.+++||.+ |..|++++++++||+
T Consensus        76 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv  154 (306)
T 3ii7_A           76 NVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ-RCSHGMVEANGLIYV  154 (306)
T ss_dssp             ETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEE
T ss_pred             eCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC-cceeEEEEECCEEEE
Confidence            99887                            3333455678999999999999999999999 999999999999999


Q ss_pred             Eec-----C----ceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC-------cEEEEecCCc--eEEEecc
Q 021080          186 LHK-----G----LSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-------GLIIKQHRDV--RKVVASA  244 (317)
Q Consensus       186 ~gG-----~----~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~-------~~~~~yd~~~--W~~v~~~  244 (317)
                      +||     .    .+.+++||+.+++|+.+++++.   .+.+++++++||++||       +.++.||+++  |+.++.+
T Consensus       155 ~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  234 (306)
T 3ii7_A          155 CGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM  234 (306)
T ss_dssp             ECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred             ECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC
Confidence            999     2    6889999999999999987765   6777889999999998       4689999887  9999998


Q ss_pred             ccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEe
Q 021080          245 SEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL  315 (317)
Q Consensus       245 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~  315 (317)
                      |  ..|..++++.++++||++||.+...       ..+++++||++++  +|+.+++||.+|.. ++++++
T Consensus       235 p--~~r~~~~~~~~~~~i~v~GG~~~~~-------~~~~~~~yd~~~~--~W~~~~~~~~~r~~-~~~~~~  293 (306)
T 3ii7_A          235 P--WKGVTVKCAAVGSIVYVLAGFQGVG-------RLGHILEYNTETD--KWVANSKVRAFPVT-SCLICV  293 (306)
T ss_dssp             S--CCBSCCEEEEETTEEEEEECBCSSS-------BCCEEEEEETTTT--EEEEEEEEECCSCT-TCEEEE
T ss_pred             C--CCccceeEEEECCEEEEEeCcCCCe-------eeeeEEEEcCCCC--eEEeCCCcccccce-eEEEEE
Confidence            8  6889999999999999999987653       6779999999999  99999999999998 566655

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=274.17  Aligned_cols=236  Identities=22%  Similarity=0.298  Sum_probs=204.2

Q ss_pred             cCceEEEEEe-CC----CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCccccc
Q 021080           54 SENLLCVCAF-DP----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATN  128 (317)
Q Consensus        54 ~~~~l~v~gg-~~----~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~  128 (317)
                      .++.||++|| ..    .+++++||+.+++|..++++|.+   |..+++++++++||++||..+.           ...+
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~l~v~GG~~~~-----------~~~~   78 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK---RRYVASVSLHDRIYVIGGYDGR-----------SRLS   78 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC---CBSCEEEEETTEEEEECCBCSS-----------CBCC
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh---hccccEEEECCEEEEEcCCCCC-----------ccCc
Confidence            4778999999 32    67999999999999999998875   9999999999999999997632           2577


Q ss_pred             ceeEecccCC------------------------------CCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEE
Q 021080          129 EVWSYDPVTR------------------------------GFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV  178 (317)
Q Consensus       129 ~~~~~d~~~~------------------------------G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~  178 (317)
                      ++++||+.++                              |........+++++||+.+++|+.++++|.+ |..|++++
T Consensus        79 ~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~  157 (301)
T 2vpj_A           79 SVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-REGAGLVV  157 (301)
T ss_dssp             CEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-CBSCEEEE
T ss_pred             eEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-cccceEEE
Confidence            8999988664                              3222334578999999999999999999999 99999999


Q ss_pred             ECCEEEEEec-----CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC-------cEEEEecCCc--eEEE
Q 021080          179 IGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-------GLIIKQHRDV--RKVV  241 (317)
Q Consensus       179 ~~g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~-------~~~~~yd~~~--W~~v  241 (317)
                      ++++||++||     ..+.+++||+.+++|+.+++++.   .+.+++++++||++||       +.++.||+++  |+++
T Consensus       158 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  237 (301)
T 2vpj_A          158 ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV  237 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence            9999999999     35789999999999999987765   5677889999999998       4799999886  9999


Q ss_pred             eccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEee
Q 021080          242 ASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLR  316 (317)
Q Consensus       242 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~~  316 (317)
                      +.+|  .+|..++++.++++||++||.+...       ..+++++||++++  +|+.+++||.+|.. |+|++|.
T Consensus       238 ~~~p--~~r~~~~~~~~~~~i~v~GG~~~~~-------~~~~v~~yd~~~~--~W~~~~~~~~~r~~-~~~~~~~  300 (301)
T 2vpj_A          238 TSMT--TPRCYVGATVLRGRLYAIAGYDGNS-------LLSSIECYDPIID--SWEVVTSMGTQRCD-AGVCVLR  300 (301)
T ss_dssp             CCCS--SCCBSCEEEEETTEEEEECCBCSSS-------BEEEEEEEETTTT--EEEEEEEEEEEEES-CEEEEEE
T ss_pred             CCCC--CcccceeEEEECCEEEEEcCcCCCc-------ccccEEEEcCCCC--eEEEcCCCCccccc-ceEEEeC
Confidence            9988  6788999999999999999987552       5679999999999  99999999999998 6888764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=2.1e-36  Score=269.67  Aligned_cols=249  Identities=15%  Similarity=0.205  Sum_probs=199.3

Q ss_pred             hhhhhcCHhHHHhhcChhhHHHHHhcC--CcCceEEEEEeCC----------CCceEEEeCCCCCEeecCCCCccccccC
Q 021080           26 PKLELVSRSWRAAIRSPELFKARQEVG--SSENLLCVCAFDP----------ENLWQLYDPLRDLWITLPVLPSKIRHLA   93 (317)
Q Consensus        26 ~~~~~v~k~w~~l~~s~~~~~~~~~~~--~~~~~l~v~gg~~----------~~~~~~yd~~~~~W~~~~~~p~~~~~r~   93 (317)
                      ..+....++|... ..+ .+.+|..++  ..++.||++||..          .++++.||+.+++|.+++++|.+   |.
T Consensus        27 ~~yd~~~~~W~~~-~~~-~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~  101 (318)
T 2woz_A           27 VAYDPMENECYLT-ALA-EQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA---RC  101 (318)
T ss_dssp             EEEETTTTEEEEE-EEC-TTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC---BC
T ss_pred             EEECCCCCceecc-cCC-ccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc---cc
Confidence            3455567788762 211 122333333  4588999999931          22489999999999999999986   99


Q ss_pred             CeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCc
Q 021080           94 HFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSA  173 (317)
Q Consensus        94 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~  173 (317)
                      .|++++++++|||+||....                             .....+++++||+.+++|+.++++|.+ |..
T Consensus       102 ~~~~~~~~~~iyv~GG~~~~-----------------------------~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~  151 (318)
T 2woz_A          102 LFGLGEVDDKIYVVAGKDLQ-----------------------------TEASLDSVLCYDPVAAKWSEVKNLPIK-VYG  151 (318)
T ss_dssp             SCEEEEETTEEEEEEEEBTT-----------------------------TCCEEEEEEEEETTTTEEEEECCCSSC-EES
T ss_pred             ccceEEECCEEEEEcCccCC-----------------------------CCcccceEEEEeCCCCCEeECCCCCCc-ccc
Confidence            99999999999999997531                             123468899999999999999999999 999


Q ss_pred             eEEEEECCEEEEEec------CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC-------cEEEEecCCc
Q 021080          174 CTGVVIGGKVHVLHK------GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-------GLIIKQHRDV  237 (317)
Q Consensus       174 ~~~~~~~g~lyv~gG------~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~-------~~~~~yd~~~  237 (317)
                      |++++++++||++||      ..+.+++||+.+++|+.+++++.   .+.+++++++||++||       +.++.||+++
T Consensus       152 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          152 HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             CEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCC
Confidence            999999999999999      25689999999999999987765   5677889999999997       4788999877


Q ss_pred             --eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCc--eecccCcceeEeecCCCCCceeecccCCCCCCceeeee
Q 021080          238 --RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWN--WDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCT  313 (317)
Q Consensus       238 --W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~--~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~  313 (317)
                        |++++.+|  .+|..++++.++++||++||........  ......+++++||++++  +|+.+  +|.+|.. |+++
T Consensus       232 ~~W~~~~~~p--~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~--~~~~r~~-~~~~  304 (318)
T 2woz_A          232 NKWEVMTEFP--QERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK--EWAGM--LKEIRYA-SGAS  304 (318)
T ss_dssp             CCEEECCCCS--SCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT--EEEEE--ESCCGGG-TTCE
T ss_pred             CeEEECCCCC--CcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC--Eehhh--ccccccc-ccce
Confidence              99999998  6789999999999999999987532110  01135689999999999  99999  7888887 6777


Q ss_pred             Eee
Q 021080          314 QLR  316 (317)
Q Consensus       314 ~~~  316 (317)
                      +++
T Consensus       305 ~~~  307 (318)
T 2woz_A          305 CLA  307 (318)
T ss_dssp             EEE
T ss_pred             eeC
Confidence            653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=2.7e-36  Score=268.60  Aligned_cols=249  Identities=15%  Similarity=0.167  Sum_probs=198.3

Q ss_pred             hhhhhcCHhHHHhhcChhhHHHHHhcC--CcCceEEEEEeC-----C-----CCceEEEeCCCCCEeecCCCCccccccC
Q 021080           26 PKLELVSRSWRAAIRSPELFKARQEVG--SSENLLCVCAFD-----P-----ENLWQLYDPLRDLWITLPVLPSKIRHLA   93 (317)
Q Consensus        26 ~~~~~v~k~w~~l~~s~~~~~~~~~~~--~~~~~l~v~gg~-----~-----~~~~~~yd~~~~~W~~~~~~p~~~~~r~   93 (317)
                      ..+....++|.. ..-| .+.+|..++  ..++.||++||.     .     .++++.||+.+++|..++++|.+   |.
T Consensus        16 ~~yd~~~~~W~~-~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~   90 (315)
T 4asc_A           16 VAYDPAANECYC-ASLS-SQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSP---RC   90 (315)
T ss_dssp             EEEETTTTEEEE-EECC-CCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSC---EE
T ss_pred             EEECCCCCeEec-CCCC-CCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcc---hh
Confidence            345556777864 2222 122344443  358899999993     1     24589999999999999999975   99


Q ss_pred             CeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCc
Q 021080           94 HFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSA  173 (317)
Q Consensus        94 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~  173 (317)
                      +|++++++++|||+||.....                            .....+++++||+.+++|+.+++||.+ |..
T Consensus        91 ~~~~~~~~~~lyv~GG~~~~~----------------------------~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~  141 (315)
T 4asc_A           91 LFGLGEALNSIYVVGGREIKD----------------------------GERCLDSVMCYDRLSFKWGESDPLPYV-VYG  141 (315)
T ss_dssp             SCEEEEETTEEEEECCEESST----------------------------TCCBCCCEEEEETTTTEEEECCCCSSC-CBS
T ss_pred             ceeEEEECCEEEEEeCCcCCC----------------------------CCcccceEEEECCCCCcEeECCCCCCc-ccc
Confidence            999999999999999975210                            134568999999999999999999999 999


Q ss_pred             eEEEEECCEEEEEecC------ceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC-------cEEEEecCCc
Q 021080          174 CTGVVIGGKVHVLHKG------LSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-------GLIIKQHRDV  237 (317)
Q Consensus       174 ~~~~~~~g~lyv~gG~------~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~-------~~~~~yd~~~  237 (317)
                      |++++++++||++||.      .+.+++||+.+++|+.+++++.   .+.+++++++||++||       +.++.||+++
T Consensus       142 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          142 HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCC
Confidence            9999999999999992      5789999999999999987765   5677889999999997       4799999887


Q ss_pred             --eEEEeccccccccccEEEEEECCeEEEEeCcccCC--CCceecccCcceeEeecCCCCCceeecccCCCCCCceeeee
Q 021080          238 --RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD--RWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCT  313 (317)
Q Consensus       238 --W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~--~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~  313 (317)
                        |+.++.+|  .+|.+++++.++++||++||.+...  .........+++++||++++  +|+.+  +|.+|.. ++++
T Consensus       222 ~~W~~~~~~p--~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~--~~~~r~~-~~~~  294 (315)
T 4asc_A          222 NKWAPFEAFP--QERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK--KWEGV--LREIAYA-AGAT  294 (315)
T ss_dssp             TEEEEECCCS--SCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT--EEEEE--ESCSSCC-SSCE
T ss_pred             CeEEECCCCC--CcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC--hhhhh--ccCCcCc-cceE
Confidence              99999988  6899999999999999999986531  11111135679999999999  99999  4566666 4555


Q ss_pred             Ee
Q 021080          314 QL  315 (317)
Q Consensus       314 ~~  315 (317)
                      ++
T Consensus       295 ~~  296 (315)
T 4asc_A          295 FL  296 (315)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=7.2e-35  Score=263.68  Aligned_cols=229  Identities=14%  Similarity=0.166  Sum_probs=183.9

Q ss_pred             cCceEEEEEeCCCCceEEEeCC--CCCEeecCCCC-ccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccce
Q 021080           54 SENLLCVCAFDPENLWQLYDPL--RDLWITLPVLP-SKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV  130 (317)
Q Consensus        54 ~~~~l~v~gg~~~~~~~~yd~~--~~~W~~~~~~p-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~  130 (317)
                      .++.|||+||...+++++||+.  +++|..++++| .+   |..|++++++++|||+||.....+               
T Consensus        18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~---R~~~~~~~~~~~lyv~GG~~~~~~---------------   79 (357)
T 2uvk_A           18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGP---RDQATSAFIDGNLYVFGGIGKNSE---------------   79 (357)
T ss_dssp             ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCC---CBSCEEEEETTEEEEECCEEECTT---------------
T ss_pred             ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCc---CccceEEEECCEEEEEcCCCCCCC---------------
Confidence            3889999999777899999998  49999999999 54   999999999999999999721000               


Q ss_pred             eEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCC-ccCCCceEEEEECCEEEEEecC--------------------
Q 021080          131 WSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLH-RTHNSACTGVVIGGKVHVLHKG--------------------  189 (317)
Q Consensus       131 ~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~~r~~~~~~~~~g~lyv~gG~--------------------  189 (317)
                                 ......+++++||+.+++|+.+++|+ .+ |..|++++++++||++||.                    
T Consensus        80 -----------~~~~~~~~v~~yd~~~~~W~~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~  147 (357)
T 2uvk_A           80 -----------GLTQVFNDVHKYNPKTNSWVKLMSHAPMG-MAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDST  147 (357)
T ss_dssp             -----------SCEEECCCEEEEETTTTEEEECSCCCSSC-CSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHH
T ss_pred             -----------ccceeeccEEEEeCCCCcEEECCCCCCcc-cccceEEEECCEEEEEeCcCCCcCcccccchhhcCCccc
Confidence                       01345789999999999999999998 88 9999999999999999992                    


Q ss_pred             -------------------ceeEEEEeCCCCcEEeccCCcc----CCcEEEEcCeEEEEeC--------cEEEEecC--C
Q 021080          190 -------------------LSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSH--------GLIIKQHR--D  236 (317)
Q Consensus       190 -------------------~~~v~~yd~~~~~W~~~~~~~~----~~~~~~~~~~ly~~g~--------~~~~~yd~--~  236 (317)
                                         .+.+++||+.+++|+.+++++.    .+.+++++++||++||        ..++.||.  +
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~  227 (357)
T 2uvk_A          148 AIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGN  227 (357)
T ss_dssp             HHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC--
T ss_pred             chhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCC
Confidence                               2689999999999999987664    3677888999999998        35777864  5


Q ss_pred             c--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCC----------ceecccCcceeEeecCCCCCceeecccCCC
Q 021080          237 V--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRW----------NWDIKPMSDVDVLTVGAERPTWRQVSPMTR  304 (317)
Q Consensus       237 ~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~----------~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~  304 (317)
                      +  |+++..++.+..|.+++++.++++||++||....+..          .......+++++||++++  +|+.+++||.
T Consensus       228 ~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~  305 (357)
T 2uvk_A          228 NLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG--KWDKSGELSQ  305 (357)
T ss_dssp             -CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSS
T ss_pred             CCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC--ceeeCCCCCC
Confidence            4  9999999865667788899999999999997643200          000023468999999999  9999999999


Q ss_pred             CCCceeeeeEe
Q 021080          305 CRGTILGCTQL  315 (317)
Q Consensus       305 ~~~~~~~~~~~  315 (317)
                      +|.. ++++++
T Consensus       306 ~r~~-~~~~~~  315 (357)
T 2uvk_A          306 GRAY-GVSLPW  315 (357)
T ss_dssp             CCBS-SEEEEE
T ss_pred             Cccc-ceeEEe
Confidence            9998 677655

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=8.5e-35  Score=258.92  Aligned_cols=218  Identities=18%  Similarity=0.206  Sum_probs=185.3

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEec
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD  134 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d  134 (317)
                      ++.|+++||   +++++||+.+++|.. +++|.+ .+|.++++++++++|||+||.....+                   
T Consensus         4 ~~~l~~~GG---~~~~~yd~~~~~W~~-~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~-------------------   59 (315)
T 4asc_A            4 QDLIFMISE---EGAVAYDPAANECYC-ASLSSQ-VPKNHVSLVTKENQVFVAGGLFYNED-------------------   59 (315)
T ss_dssp             EEEEEEEET---TEEEEEETTTTEEEE-EECCCC-SCSSEEEEECTTCCEEEEEEEEECSS-------------------
T ss_pred             ceEEEEEcC---CceEEECCCCCeEec-CCCCCC-CCccceEEEEECCEEEEEcCcccCCC-------------------
Confidence            568899998   789999999999987 566542 24999999999999999999632100                   


Q ss_pred             ccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec--------CceeEEEEeCCCCcEEec
Q 021080          135 PVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK--------GLSTVQVLDHMGLGWTVE  206 (317)
Q Consensus       135 ~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG--------~~~~v~~yd~~~~~W~~~  206 (317)
                            .......+++++||+.+++|+.+++||.+ |..|++++++++||++||        ..+.+++||+.+++|+.+
T Consensus        60 ------~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~  132 (315)
T 4asc_A           60 ------NKEDPMSAYFLQFDHLDSEWLGMPPLPSP-RCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES  132 (315)
T ss_dssp             ------CSSSCEEEEEEEEETTTTEEEECCCBSSC-EESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC
T ss_pred             ------CCccccccceEEecCCCCeEEECCCCCcc-hhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC
Confidence                  00122345699999999999999999999 999999999999999999        246799999999999999


Q ss_pred             cCCcc---CCcEEEEcCeEEEEeC--------cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCC
Q 021080          207 DYGWL---QGPMAIVHDSVYLMSH--------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDR  273 (317)
Q Consensus       207 ~~~~~---~~~~~~~~~~ly~~g~--------~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~  273 (317)
                      ++++.   .+.+++++++||++||        +.++.||+++  |+.++.+|  .+|..++++.++++||++||....+ 
T Consensus       133 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~-  209 (315)
T 4asc_A          133 DPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ--TARSLFGATVHDGRIIVAAGVTDTG-  209 (315)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEEEEECSSS-
T ss_pred             CCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC--CchhceEEEEECCEEEEEeccCCCC-
Confidence            87765   6778889999999998        4799999887  99999988  6899999999999999999987653 


Q ss_pred             CceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEe
Q 021080          274 WNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL  315 (317)
Q Consensus       274 ~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~  315 (317)
                            ..+++++||++++  +|+.++++|.+|.. ++++++
T Consensus       210 ------~~~~~~~yd~~~~--~W~~~~~~p~~r~~-~~~~~~  242 (315)
T 4asc_A          210 ------LTSSAEVYSITDN--KWAPFEAFPQERSS-LSLVSL  242 (315)
T ss_dssp             ------EEEEEEEEETTTT--EEEEECCCSSCCBS-CEEEEE
T ss_pred             ------ccceEEEEECCCC--eEEECCCCCCcccc-eeEEEE
Confidence                  5679999999999  99999999999998 677665

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=7e-34  Score=253.32  Aligned_cols=219  Identities=16%  Similarity=0.210  Sum_probs=182.6

Q ss_pred             cCceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           54 SENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        54 ~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      .++.||++||   .++++|||.+++|... +++.+ .+|.++++++.+++|||+||.....+       +          
T Consensus        14 ~~~~i~~~GG---~~~~~yd~~~~~W~~~-~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~~-------~----------   71 (318)
T 2woz_A           14 VKDLILLVND---TAAVAYDPMENECYLT-ALAEQ-IPRNHSSIVTQQNQVYVVGGLYVDEE-------N----------   71 (318)
T ss_dssp             EEEEEEEECS---SEEEEEETTTTEEEEE-EECTT-SCSSEEEEECSSSCEEEEESSCC---------------------
T ss_pred             ecchhhhccc---cceEEECCCCCceecc-cCCcc-CCccceEEEEECCEEEEECCcccCcc-------c----------
Confidence            3678999998   4689999999999984 44432 24899999999999999999632110       0          


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecC-------ceeEEEEeCCCCcEEec
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKG-------LSTVQVLDHMGLGWTVE  206 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~-------~~~v~~yd~~~~~W~~~  206 (317)
                              ......+++++||+.+++|+.+++||.+ |..|++++++++||++||.       .+.+++||+.+++|+.+
T Consensus        72 --------~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~  142 (318)
T 2woz_A           72 --------KDQPLQSYFFQLDNVSSEWVGLPPLPSA-RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV  142 (318)
T ss_dssp             -----------CCCBEEEEEETTTTEEEECSCBSSC-BCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE
T ss_pred             --------cCCCccccEEEEeCCCCcEEECCCCCcc-ccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC
Confidence                    0011235689999999999999999999 9999999999999999992       36899999999999999


Q ss_pred             cCCcc---CCcEEEEcCeEEEEeC--------cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCC
Q 021080          207 DYGWL---QGPMAIVHDSVYLMSH--------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDR  273 (317)
Q Consensus       207 ~~~~~---~~~~~~~~~~ly~~g~--------~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~  273 (317)
                      ++++.   .+.+++++++||++||        +.++.||+++  |++++.+|  .+|..++++.++++||++||....  
T Consensus       143 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~--  218 (318)
T 2woz_A          143 KNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK--TPRSMFGVAIHKGKIVIAGGVTED--  218 (318)
T ss_dssp             CCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS--SCCBSCEEEEETTEEEEEEEEETT--
T ss_pred             CCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC--CCcccceEEEECCEEEEEcCcCCC--
Confidence            87765   6778889999999998        3699999887  99999988  688999999999999999998765  


Q ss_pred             CceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEe
Q 021080          274 WNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL  315 (317)
Q Consensus       274 ~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~  315 (317)
                           ...+++++||++++  +|+.++++|.+|.. |+++++
T Consensus       219 -----~~~~~~~~yd~~~~--~W~~~~~~p~~r~~-~~~~~~  252 (318)
T 2woz_A          219 -----GLSASVEAFDLKTN--KWEVMTEFPQERSS-ISLVSL  252 (318)
T ss_dssp             -----EEEEEEEEEETTTC--CEEECCCCSSCCBS-CEEEEE
T ss_pred             -----CccceEEEEECCCC--eEEECCCCCCcccc-eEEEEE
Confidence                 25679999999999  99999999999998 676665

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.98  E-value=2e-32  Score=247.57  Aligned_cols=251  Identities=16%  Similarity=0.119  Sum_probs=182.5

Q ss_pred             CHhHHHhhcChhhH-HHHHhcCC--cCceEEEEEeC-C--------CCceEEEeCCCCCEeecCCCCccccccCCeeEEE
Q 021080           32 SRSWRAAIRSPELF-KARQEVGS--SENLLCVCAFD-P--------ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVS   99 (317)
Q Consensus        32 ~k~w~~l~~s~~~~-~~~~~~~~--~~~~l~v~gg~-~--------~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~   99 (317)
                      .++|+.+..   ++ .+|..++.  .++.|||+||. .        .+++++||+.+++|..+++++  |.+|..+++++
T Consensus        42 ~~~W~~~~~---~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--p~~r~~~~~~~  116 (357)
T 2uvk_A           42 DKKWTALAA---FPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA--PMGMAGHVTFV  116 (357)
T ss_dssp             SCCEEECCC---CTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC--SSCCSSEEEEE
T ss_pred             CCCeeECCC---CCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC--CcccccceEEE
Confidence            478988743   44 34444433  48899999996 1        578999999999999999988  23599999999


Q ss_pred             eCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCC-----------CCCCCcCCCceeEEeeCCCCceeeCCCCCc
Q 021080          100 TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTR-----------GFTSCRKSISQAEMYDPEKDVWVPIPDLHR  168 (317)
Q Consensus       100 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----------G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~  168 (317)
                      ++++|||+||.+....      +  ....++..+++..+           +........+++++||+.+++|+.+++||.
T Consensus       117 ~~~~iyv~GG~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~  188 (357)
T 2uvk_A          117 HNGKAYVTGGVNQNIF------N--GYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPW  188 (357)
T ss_dssp             ETTEEEEEECCCHHHH------H--HHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSS
T ss_pred             ECCEEEEEeCcCCCcC------c--ccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCC
Confidence            9999999999753100      0  00000111111000           000001245899999999999999999998


Q ss_pred             cCCCceEEEEECCEEEEEec------CceeEEEEeC--CCCcEEeccCCcc-----CCcEEEEcCeEEEEeCc-------
Q 021080          169 THNSACTGVVIGGKVHVLHK------GLSTVQVLDH--MGLGWTVEDYGWL-----QGPMAIVHDSVYLMSHG-------  228 (317)
Q Consensus       169 ~~r~~~~~~~~~g~lyv~gG------~~~~v~~yd~--~~~~W~~~~~~~~-----~~~~~~~~~~ly~~g~~-------  228 (317)
                      +.+..+++++++++||++||      ..+.+++||+  .+++|+.++.++.     .+.+++++++||++||.       
T Consensus       189 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~  268 (357)
T 2uvk_A          189 YGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRE  268 (357)
T ss_dssp             CCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHH
T ss_pred             CCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcc
Confidence            72444899999999999999      2567888976  9999999987743     34578899999999982       


Q ss_pred             -----------------EEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeec
Q 021080          229 -----------------LIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTV  289 (317)
Q Consensus       229 -----------------~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~  289 (317)
                                       .++.||+++  |++++.+|  .+|..++++.++++|||+||.+..+      ...+++++|++
T Consensus       269 ~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~i~v~GG~~~~~------~~~~~v~~l~~  340 (357)
T 2uvk_A          269 NYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS--QGRAYGVSLPWNNSLLIIGGETAGG------KAVTDSVLITV  340 (357)
T ss_dssp             HHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS--SCCBSSEEEEETTEEEEEEEECGGG------CEEEEEEEEEC
T ss_pred             cccccceeccccccceeeEEEEecCCCceeeCCCCC--CCcccceeEEeCCEEEEEeeeCCCC------CEeeeEEEEEE
Confidence                             578899877  99999998  6788899999999999999987664      35689999999


Q ss_pred             CCCCCceeecccCCCC
Q 021080          290 GAERPTWRQVSPMTRC  305 (317)
Q Consensus       290 ~~~~~~W~~~~~~p~~  305 (317)
                      +++  +|.+..+.|..
T Consensus       341 ~~~--~~~~~~~~~~~  354 (357)
T 2uvk_A          341 KDN--KVTVQNLEHHH  354 (357)
T ss_dssp             -CC--SCEEEC-----
T ss_pred             cCc--EeEeeeccccc
Confidence            999  99998877653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.98  E-value=4.8e-31  Score=233.98  Aligned_cols=200  Identities=18%  Similarity=0.247  Sum_probs=168.0

Q ss_pred             ccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCC---------------------------CCC--
Q 021080           91 HLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTR---------------------------GFT--  141 (317)
Q Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------------------G~~--  141 (317)
                      +|..++++.++++||++||...            ...+++++||+.++                           |..  
T Consensus        14 ~~~~~~~~~~~~~i~v~GG~~~------------~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~   81 (308)
T 1zgk_A           14 VPRGSHAPKVGRLIYTAGGYFR------------QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN   81 (308)
T ss_dssp             -------CCCCCCEEEECCBSS------------SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEE
T ss_pred             eeCCccccCCCCEEEEEeCcCC------------CCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcC
Confidence            4888999999999999999732            25788999999877                           332  


Q ss_pred             --CCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec-----CceeEEEEeCCCCcEEeccCCcc---
Q 021080          142 --SCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDYGWL---  211 (317)
Q Consensus       142 --~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~~~~---  211 (317)
                        ......+++++||+.+++|+.+++||.+ |..+++++++++||++||     ..+.+++||+.+++|+.+++++.   
T Consensus        82 ~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~  160 (308)
T 1zgk_A           82 SPDGNTDSSALDCYNPMTNQWSPCAPMSVP-RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRI  160 (308)
T ss_dssp             ETTEEEECCCEEEEETTTTEEEECCCCSSC-CBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCB
T ss_pred             CCCCCeecceEEEECCCCCeEeECCCCCcC-ccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcccc
Confidence              3345678999999999999999999999 999999999999999999     35789999999999999987765   


Q ss_pred             CCcEEEEcCeEEEEeC-------cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCc
Q 021080          212 QGPMAIVHDSVYLMSH-------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMS  282 (317)
Q Consensus       212 ~~~~~~~~~~ly~~g~-------~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~  282 (317)
                      .+.+++++++||++||       +.++.||+++  |+.++.+|  .+|..++++.++++||++||....       ...+
T Consensus       161 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~  231 (308)
T 1zgk_A          161 GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN--TIRSGAGVCVLHNCIYAAGGYDGQ-------DQLN  231 (308)
T ss_dssp             SCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEECCBCSS-------SBCC
T ss_pred             ceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC--CccccceEEEECCEEEEEeCCCCC-------Cccc
Confidence            6677888999999998       4699999877  99999988  688999999999999999998755       2578


Q ss_pred             ceeEeecCCCCCceeecccCCCCCCceeeeeEe
Q 021080          283 DVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL  315 (317)
Q Consensus       283 ~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~  315 (317)
                      ++++||++++  +|+.++++|.+|.. ++++++
T Consensus       232 ~v~~yd~~~~--~W~~~~~~p~~r~~-~~~~~~  261 (308)
T 1zgk_A          232 SVERYDVETE--TWTFVAPMKHRRSA-LGITVH  261 (308)
T ss_dssp             CEEEEETTTT--EEEECCCCSSCCBS-CEEEEE
T ss_pred             eEEEEeCCCC--cEEECCCCCCCccc-eEEEEE
Confidence            9999999999  99999999999998 677665

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=224.27  Aligned_cols=195  Identities=23%  Similarity=0.345  Sum_probs=164.0

Q ss_pred             eEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCC---------------------------CCCCCcCCCc
Q 021080           96 GVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTR---------------------------GFTSCRKSIS  148 (317)
Q Consensus        96 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------------------G~~~~~~~~~  148 (317)
                      ..+.+++.||++||.+..            ..+++++||+.++                           |........+
T Consensus        10 ~~~~~~~~i~v~GG~~~~------------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~   77 (302)
T 2xn4_A           10 TPMNLPKLMVVVGGQAPK------------AIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVR   77 (302)
T ss_dssp             -----CEEEEEECCBSSS------------BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCC
T ss_pred             cccCCCCEEEEECCCCCC------------CCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCcccc
Confidence            345678899999997542            4678999998877                           3333345678


Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec-----CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcC
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHD  220 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~  220 (317)
                      ++++||+.+++|+.+++||.+ |..|++++++++||++||     ..+.+++||+.+++|+.+++++.   .+.++++++
T Consensus        78 ~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~  156 (302)
T 2xn4_A           78 TVDSYDPVKDQWTSVANMRDR-RSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGG  156 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred             ceEEECCCCCceeeCCCCCcc-ccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECC
Confidence            999999999999999999999 999999999999999999     34789999999999999987765   567788999


Q ss_pred             eEEEEeC---------cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeec
Q 021080          221 SVYLMSH---------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTV  289 (317)
Q Consensus       221 ~ly~~g~---------~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~  289 (317)
                      +||++||         +.++.||+++  |+.++.+|  .+|.+++++.++++||++||.+..       ...+++++||+
T Consensus       157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~~~~yd~  227 (302)
T 2xn4_A          157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS--TRRSGAGVGVLNNLLYAVGGHDGP-------LVRKSVEVYDP  227 (302)
T ss_dssp             EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS--SCCBSCEEEEETTEEEEECCBSSS-------SBCCCEEEEET
T ss_pred             EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc--cccccccEEEECCEEEEECCCCCC-------cccceEEEEeC
Confidence            9999997         3588999887  99999988  688999999999999999998754       35679999999


Q ss_pred             CCCCCceeecccCCCCCCceeeeeEe
Q 021080          290 GAERPTWRQVSPMTRCRGTILGCTQL  315 (317)
Q Consensus       290 ~~~~~~W~~~~~~p~~~~~~~~~~~~  315 (317)
                      +++  +|+.++++|.+|.. ++++++
T Consensus       228 ~~~--~W~~~~~~~~~r~~-~~~~~~  250 (302)
T 2xn4_A          228 TTN--AWRQVADMNMCRRN-AGVCAV  250 (302)
T ss_dssp             TTT--EEEEECCCSSCCBS-CEEEEE
T ss_pred             CCC--CEeeCCCCCCcccc-CeEEEE
Confidence            999  99999999999987 566654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.97  E-value=5.5e-29  Score=220.30  Aligned_cols=187  Identities=17%  Similarity=0.254  Sum_probs=163.5

Q ss_pred             CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCC---------------------------CCCCCcCCCceeEEe
Q 021080          101 AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTR---------------------------GFTSCRKSISQAEMY  153 (317)
Q Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------------------G~~~~~~~~~~~~~y  153 (317)
                      .+.||++||...              .+++++||+.++                           |... ....+++++|
T Consensus        11 ~~~l~~~GG~~~--------------~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~   75 (306)
T 3ii7_A           11 HDYRIALFGGSQ--------------PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCY   75 (306)
T ss_dssp             CCEEEEEECCSS--------------TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEE
T ss_pred             cceEEEEeCCCC--------------CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEE
Confidence            488999999752              578999999887                           3332 5567899999


Q ss_pred             eCCCCceeeCCCCCccCCCceEEEEECCEEEEEec------CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEE
Q 021080          154 DPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK------GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYL  224 (317)
Q Consensus       154 d~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG------~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~  224 (317)
                      |+.+++|+.+++||.+ |..|++++++++||++||      ..+.+++||+.+++|+.+++++.   .+.+++++++||+
T Consensus        76 d~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv  154 (306)
T 3ii7_A           76 NVVKDSWYSKLGPPTP-RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYV  154 (306)
T ss_dssp             ETTTTEEEEEECCSSC-CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE
T ss_pred             eCCCCeEEECCCCCcc-ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEE
Confidence            9999999999999999 999999999999999999      34789999999999999987765   6777889999999


Q ss_pred             EeC-----------cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCC
Q 021080          225 MSH-----------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA  291 (317)
Q Consensus       225 ~g~-----------~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~  291 (317)
                      +||           +.++.||+++  |+.++.+|  .+|.+++++.++++||++||.+..       ...+++++||+++
T Consensus       155 ~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~i~v~GG~~~~-------~~~~~~~~yd~~~  225 (306)
T 3ii7_A          155 CGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI--EARKNHGLVFVKDKIFAVGGQNGL-------GGLDNVEYYDIKL  225 (306)
T ss_dssp             ECCEESCTTTCEECCCEEEEETTTTEEEEECCCS--SCCBSCEEEEETTEEEEECCEETT-------EEBCCEEEEETTT
T ss_pred             ECCCCCCCCcccccceEEEeCCCCCeEEECCCcc--chhhcceEEEECCEEEEEeCCCCC-------CCCceEEEeeCCC
Confidence            997           3588999887  99999888  689999999999999999998765       2577999999999


Q ss_pred             CCCceeecccCCCCCCceeeeeEe
Q 021080          292 ERPTWRQVSPMTRCRGTILGCTQL  315 (317)
Q Consensus       292 ~~~~W~~~~~~p~~~~~~~~~~~~  315 (317)
                      +  +|+.++++|.+|.. ++++++
T Consensus       226 ~--~W~~~~~~p~~r~~-~~~~~~  246 (306)
T 3ii7_A          226 N--EWKMVSPMPWKGVT-VKCAAV  246 (306)
T ss_dssp             T--EEEECCCCSCCBSC-CEEEEE
T ss_pred             C--cEEECCCCCCCccc-eeEEEE
Confidence            9  99999999999998 677665

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.97  E-value=6.4e-29  Score=219.29  Aligned_cols=194  Identities=22%  Similarity=0.332  Sum_probs=165.5

Q ss_pred             EeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCC---------------------------CCCCCcCCCceeE
Q 021080           99 STAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTR---------------------------GFTSCRKSISQAE  151 (317)
Q Consensus        99 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------------------G~~~~~~~~~~~~  151 (317)
                      .++++||++||.....          ...+++++||+.++                           |........++++
T Consensus        12 ~~~~~i~~~GG~~~~~----------~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~   81 (301)
T 2vpj_A           12 GANEVLLVVGGFGSQQ----------SPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVE   81 (301)
T ss_dssp             -CCEEEEEECCEETTT----------EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEE
T ss_pred             cCCCEEEEEeCccCCC----------cceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEE
Confidence            4688999999943211          26788999999877                           3333345678999


Q ss_pred             EeeCCCCc---eeeCCCCCccCCCceEEEEECCEEEEEec-----CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcC
Q 021080          152 MYDPEKDV---WVPIPDLHRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHD  220 (317)
Q Consensus       152 ~yd~~t~~---W~~~~~~p~~~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~  220 (317)
                      +||+.+++   |+.++++|.+ |..+++++++++||++||     ..+.+++||+.+++|+.+++++.   .+.++++++
T Consensus        82 ~~d~~~~~~~~W~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~  160 (301)
T 2vpj_A           82 CLDYTADEDGVWYSVAPMNVR-RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASG  160 (301)
T ss_dssp             EEETTCCTTCCCEEECCCSSC-CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETT
T ss_pred             EEECCCCCCCeeEECCCCCCC-ccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECC
Confidence            99999999   9999999999 999999999999999999     35789999999999999987665   667788899


Q ss_pred             eEEEEeC-------cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCC
Q 021080          221 SVYLMSH-------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA  291 (317)
Q Consensus       221 ~ly~~g~-------~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~  291 (317)
                      +||++||       +.++.||+++  |+.++.+|  .+|..++++.++++||++||.+...       ..+++++||+++
T Consensus       161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~i~v~GG~~~~~-------~~~~v~~yd~~~  231 (301)
T 2vpj_A          161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA--TKRSGAGVALLNDHIYVVGGFDGTA-------HLSSVEAYNIRT  231 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS--SCCBSCEEEEETTEEEEECCBCSSS-------BCCCEEEEETTT
T ss_pred             EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC--cccccceEEEECCEEEEEeCCCCCc-------ccceEEEEeCCC
Confidence            9999997       5799999877  99999888  6888999999999999999987653       478999999999


Q ss_pred             CCCceeecccCCCCCCceeeeeEe
Q 021080          292 ERPTWRQVSPMTRCRGTILGCTQL  315 (317)
Q Consensus       292 ~~~~W~~~~~~p~~~~~~~~~~~~  315 (317)
                      +  +|+.++++|.+|.. ++++++
T Consensus       232 ~--~W~~~~~~p~~r~~-~~~~~~  252 (301)
T 2vpj_A          232 D--SWTTVTSMTTPRCY-VGATVL  252 (301)
T ss_dssp             T--EEEEECCCSSCCBS-CEEEEE
T ss_pred             C--cEEECCCCCCcccc-eeEEEE
Confidence            9  99999999999988 676665

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.96  E-value=1.6e-28  Score=240.29  Aligned_cols=205  Identities=12%  Similarity=0.065  Sum_probs=170.2

Q ss_pred             cCceEEEEEeC---CCCceEEEeCCCCCEeecC-C-----CCccccccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCC
Q 021080           54 SENLLCVCAFD---PENLWQLYDPLRDLWITLP-V-----LPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQD  122 (317)
Q Consensus        54 ~~~~l~v~gg~---~~~~~~~yd~~~~~W~~~~-~-----~p~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  122 (317)
                      .++.||++||.   ..+++++||+.+++|..++ +     +|.   +|.+|+++++  +++|||+||....         
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~---~R~~hs~~~~~~~~~lyv~GG~~~~---------  463 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPV---ARMCHTFTTISRNNQLLLIGGRKAP---------  463 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCC---CCBSCEEEEETTTTEEEEECCBSST---------
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCc---cccceEEEEEccCCEEEEEcCCCCC---------
Confidence            58899999994   4678999999999999987 6     454   4999999999  9999999998642         


Q ss_pred             CcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEE-CCEEEEEecC--ceeEEEEeCC
Q 021080          123 GSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI-GGKVHVLHKG--LSTVQVLDHM  199 (317)
Q Consensus       123 ~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~-~g~lyv~gG~--~~~v~~yd~~  199 (317)
                                           ....+++++||+.+++|+.+++||.+ |..|+++++ +++||++||.  ...+++||+.
T Consensus       464 ---------------------~~~~~dv~~yd~~t~~W~~~~~~p~~-R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~  521 (695)
T 2zwa_A          464 ---------------------HQGLSDNWIFDMKTREWSMIKSLSHT-RFRHSACSLPDGNVLILGGVTEGPAMLLYNVT  521 (695)
T ss_dssp             ---------------------TCBCCCCEEEETTTTEEEECCCCSBC-CBSCEEEECTTSCEEEECCBCSSCSEEEEETT
T ss_pred             ---------------------CCccccEEEEeCCCCcEEECCCCCCC-cccceEEEEcCCEEEEECCCCCCCCEEEEECC
Confidence                                 22468899999999999999999999 999999996 9999999992  2289999999


Q ss_pred             CCcEEeccC---Ccc---CCcEEEEc---CeEEEEeC---------cEEEEecCC--c------eEEEeccccccccccE
Q 021080          200 GLGWTVEDY---GWL---QGPMAIVH---DSVYLMSH---------GLIIKQHRD--V------RKVVASASEFRRRIGF  253 (317)
Q Consensus       200 ~~~W~~~~~---~~~---~~~~~~~~---~~ly~~g~---------~~~~~yd~~--~------W~~v~~~~~~~~r~~~  253 (317)
                      +++|+.++.   ++.   .+.+++++   ++||++||         +.++.||++  +      |+.+..+|. .+|.++
T Consensus       522 t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~-~~R~~~  600 (695)
T 2zwa_A          522 EEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL-FQRYGS  600 (695)
T ss_dssp             TTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG-GCCBSC
T ss_pred             CCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC-CCcccc
Confidence            999999986   332   45656667   89999997         368889864  3      788887642 689999


Q ss_pred             EEEEEC-CeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeec
Q 021080          254 AMIGMG-DDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV  299 (317)
Q Consensus       254 ~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~  299 (317)
                      +++.++ ++||++||....+..    ...+++++||++++  +|+.+
T Consensus       601 ~~~~~~~~~iyv~GG~~~~~~~----~~~~~v~~yd~~t~--~W~~~  641 (695)
T 2zwa_A          601 QIKYITPRKLLIVGGTSPSGLF----DRTNSIISLDPLSE--TLTSI  641 (695)
T ss_dssp             EEEEEETTEEEEECCBCSSCCC----CTTTSEEEEETTTT--EEEEC
T ss_pred             eEEEeCCCEEEEECCccCCCCC----CCCCeEEEEECCCC--eEEEe
Confidence            999999 999999998655310    25789999999999  99965

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.96  E-value=1.3e-27  Score=232.99  Aligned_cols=241  Identities=16%  Similarity=0.216  Sum_probs=184.7

Q ss_pred             hhhhcCHhHHHhhcChhhHHHHHhcCCc--CceEEEEEeCC----------CCceEEEeCCCCCEeecCCCCccccccCC
Q 021080           27 KLELVSRSWRAAIRSPELFKARQEVGSS--ENLLCVCAFDP----------ENLWQLYDPLRDLWITLPVLPSKIRHLAH   94 (317)
Q Consensus        27 ~~~~v~k~w~~l~~s~~~~~~~~~~~~~--~~~l~v~gg~~----------~~~~~~yd~~~~~W~~~~~~p~~~~~r~~   94 (317)
                      .+.....+|..+...|.   .....+..  ++.||++||..          ...+++||+.+++|..++.+|.+   |..
T Consensus       170 ~~dp~~~~W~~~~~~P~---~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~---~~~  243 (656)
T 1k3i_A          170 APQPGLGRWGPTIDLPI---VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK---HDM  243 (656)
T ss_dssp             CCCTTSCEEEEEEECSS---CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS---CCC
T ss_pred             cCCCCCCeeeeeccCCC---CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC---CCC
Confidence            44556678887755554   11112222  78999999843          13689999999999999888765   554


Q ss_pred             ee--EE-EeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCC
Q 021080           95 FG--VV-STAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHN  171 (317)
Q Consensus        95 ~~--~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r  171 (317)
                      ++  ++ ..+++||++||...                                   .++++||+.+++|+++++|+.+ |
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~-----------------------------------~~v~~yd~~t~~W~~~~~~~~~-R  287 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDA-----------------------------------KKTSLYDSSSDSWIPGPDMQVA-R  287 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSST-----------------------------------TCEEEEEGGGTEEEECCCCSSC-C
T ss_pred             ccccccCCCCCCEEEeCCCCC-----------------------------------CceEEecCcCCceeECCCCCcc-c
Confidence            43  33 46899999999742                                   3689999999999999999999 9


Q ss_pred             CceEEEEE-CCEEEEEec------CceeEEEEeCCCCcEEecc-----CCcc----------------------------
Q 021080          172 SACTGVVI-GGKVHVLHK------GLSTVQVLDHMGLGWTVED-----YGWL----------------------------  211 (317)
Q Consensus       172 ~~~~~~~~-~g~lyv~gG------~~~~v~~yd~~~~~W~~~~-----~~~~----------------------------  211 (317)
                      ..|+++++ +|+||++||      ..+.+++||+.+++|+.++     +++.                            
T Consensus       288 ~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~  367 (656)
T 1k3i_A          288 GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGP  367 (656)
T ss_dssp             SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCS
T ss_pred             cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecC
Confidence            99999998 999999999      2478999999999999863     1111                            


Q ss_pred             -------------------------------CCcEEE----EcCeEEEEeCc-------------EEEEecCCc--eEEE
Q 021080          212 -------------------------------QGPMAI----VHDSVYLMSHG-------------LIIKQHRDV--RKVV  241 (317)
Q Consensus       212 -------------------------------~~~~~~----~~~~ly~~g~~-------------~~~~yd~~~--W~~v  241 (317)
                                                     ....++    .+++||++||.             .++.||+++  |.++
T Consensus       368 ~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  447 (656)
T 1k3i_A          368 STAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVF  447 (656)
T ss_dssp             SSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEE
T ss_pred             ccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEE
Confidence                                           012333    38999999982             688999876  9998


Q ss_pred             e--ccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEe
Q 021080          242 A--SASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL  315 (317)
Q Consensus       242 ~--~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~  315 (317)
                      .  .||  .+|..++++.+ +|+||++||.+...... ......++++||++++  +|+.++++|.+|.. |++|++
T Consensus       448 ~~~~mp--~~R~~~~~~~l~~g~i~v~GG~~~~~~~~-~~~~~~~v~~ydp~t~--~W~~~~~~~~~R~~-hs~a~l  518 (656)
T 1k3i_A          448 ASNGLY--FARTFHTSVVLPDGSTFITGGQRRGIPFE-DSTPVFTPEIYVPEQD--TFYKQNPNSIVRVY-HSISLL  518 (656)
T ss_dssp             CTTCCS--SCCBSCEEEECTTSCEEEECCBSBCCTTC-CCSBCCCCEEEEGGGT--EEEECCCCSSCCCT-TEEEEE
T ss_pred             ccCCCC--CCcccCCeEECCCCCEEEECCcccCcCcC-CCCcccceEEEcCCCC--ceeecCCCCCcccc-ccHhhc
Confidence            7  777  68888888887 99999999976431100 1146789999999999  99999999999999 676665

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.93  E-value=6.9e-25  Score=214.54  Aligned_cols=182  Identities=11%  Similarity=0.028  Sum_probs=150.8

Q ss_pred             ccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCC-C----
Q 021080           91 HLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIP-D----  165 (317)
Q Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~-~----  165 (317)
                      .|.++++ +++++|||+||...                                ...+++++||+.+++|+.++ +    
T Consensus       388 rr~g~~~-~~~~~iyv~GG~~~--------------------------------~~~~~v~~yd~~~~~W~~~~~~~p~~  434 (695)
T 2zwa_A          388 RKFGDVD-VAGNDVFYMGGSNP--------------------------------YRVNEILQLSIHYDKIDMKNIEVSSS  434 (695)
T ss_dssp             CBSCEEE-ECSSCEEEECCBSS--------------------------------SBCCCEEEEEECSSCEEEEECCCCCS
T ss_pred             CceeEEE-EECCEEEEECCCCC--------------------------------CCcCcEEEEECCCCeEEEeccCCCCC
Confidence            3666554 48999999999742                                23578999999999999987 5    


Q ss_pred             -CCccCCCceEEEEE--CCEEEEEec------CceeEEEEeCCCCcEEeccCCcc---CCcEEEE-cCeEEEEeCc----
Q 021080          166 -LHRTHNSACTGVVI--GGKVHVLHK------GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIV-HDSVYLMSHG----  228 (317)
Q Consensus       166 -~p~~~r~~~~~~~~--~g~lyv~gG------~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~-~~~ly~~g~~----  228 (317)
                       ||.+ |..|+++++  +|+||++||      ..+++++||+.+++|+.+++++.   .+.++++ +++||++||.    
T Consensus       435 ~~p~~-R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~  513 (695)
T 2zwa_A          435 EVPVA-RMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP  513 (695)
T ss_dssp             CCCCC-CBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC
T ss_pred             CCCcc-ccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC
Confidence             7889 999999999  999999999      24789999999999999987765   5667775 9999999983    


Q ss_pred             EEEEecCCc--eEEEec---cccccccccEEEEEEC---CeEEEEeCcccCCCCceecccCcceeEeecCCCCCc-----
Q 021080          229 LIIKQHRDV--RKVVAS---ASEFRRRIGFAMIGMG---DDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPT-----  295 (317)
Q Consensus       229 ~~~~yd~~~--W~~v~~---~~~~~~r~~~~~~~~~---~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~-----  295 (317)
                      .++.||+++  |+.+..   +|  .+|.++++++++   ++||++||....+.     ...+++++||++++  +     
T Consensus       514 ~v~~yd~~t~~W~~~~~~g~~p--~~r~~~~a~v~~~~~~~iyv~GG~~~~~~-----~~~~~v~~yd~~~~--~w~~~~  584 (695)
T 2zwa_A          514 AMLLYNVTEEIFKDVTPKDEFF--QNSLVSAGLEFDPVSKQGIILGGGFMDQT-----TVSDKAIIFKYDAE--NATEPI  584 (695)
T ss_dssp             SEEEEETTTTEEEECCCSSGGG--GSCCBSCEEEEETTTTEEEEECCBCTTSS-----CBCCEEEEEEECTT--CSSCCE
T ss_pred             CEEEEECCCCceEEccCCCCCC--CcccceeEEEEeCCCCEEEEECCcCCCCC-----eeeCcEEEEEccCC--ccccce
Confidence            799999887  999986   66  688888877776   89999999865431     35789999999999  8     


Q ss_pred             -eeecccC-CCCCCceeeeeEee
Q 021080          296 -WRQVSPM-TRCRGTILGCTQLR  316 (317)
Q Consensus       296 -W~~~~~~-p~~~~~~~~~~~~~  316 (317)
                       |+.+.++ +.+|.. |++++++
T Consensus       585 ~W~~~~~~p~~~R~~-~~~~~~~  606 (695)
T 2zwa_A          585 TVIKKLQHPLFQRYG-SQIKYIT  606 (695)
T ss_dssp             EEEEEEECGGGCCBS-CEEEEEE
T ss_pred             EEEEcCCCCCCCccc-ceEEEeC
Confidence             8999886 588887 6777654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.90  E-value=6.4e-23  Score=199.80  Aligned_cols=211  Identities=10%  Similarity=0.038  Sum_probs=154.0

Q ss_pred             CceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCc
Q 021080           67 NLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCR  144 (317)
Q Consensus        67 ~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~  144 (317)
                      ..+..||+.+++|..+.++|.     ..+.++++  +++||++||......                       |  ...
T Consensus       166 ~~~~~~dp~~~~W~~~~~~P~-----~~~~~av~~~~g~l~v~GG~~~~~~-----------------------~--~~~  215 (656)
T 1k3i_A          166 SSYTAPQPGLGRWGPTIDLPI-----VPAAAAIEPTSGRVLMWSSYRNDAF-----------------------G--GSP  215 (656)
T ss_dssp             SCCCCCCTTSCEEEEEEECSS-----CCSEEEEETTTTEEEEEEECCCTTT-----------------------C--SCC
T ss_pred             cccccCCCCCCeeeeeccCCC-----CceeEEEEecCCEEEEEeccccccc-----------------------c--cCC
Confidence            357889999999999988874     33444444  999999999753210                       0  001


Q ss_pred             CCCceeEEeeCCCCceeeCCCCCccCCCce--EEE-EECCEEEEEec-CceeEEEEeCCCCcEEeccCCcc---CCcEEE
Q 021080          145 KSISQAEMYDPEKDVWVPIPDLHRTHNSAC--TGV-VIGGKVHVLHK-GLSTVQVLDHMGLGWTVEDYGWL---QGPMAI  217 (317)
Q Consensus       145 ~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~--~~~-~~~g~lyv~gG-~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~  217 (317)
                      .....+++||+.+++|+.+++||.+ |..+  +++ ..+|+||++|| ....+++||+.+++|+.+++++.   .+.+++
T Consensus       216 ~~~~~~~~yd~~t~~w~~~~~~~~~-~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~  294 (656)
T 1k3i_A          216 GGITLTSSWDPSTGIVSDRTVTVTK-HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSAT  294 (656)
T ss_dssp             CSEEEEEEECTTTCCBCCCEEEECS-CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEE
T ss_pred             CCeEEEEEEeCCCCcEEeCcccCCC-CCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEE
Confidence            2345789999999999999999887 5443  233 46899999999 45589999999999999987765   466777


Q ss_pred             E-cCeEEEEeC--------cEEEEecCCc--eEEEe-----cccccc---------------------------------
Q 021080          218 V-HDSVYLMSH--------GLIIKQHRDV--RKVVA-----SASEFR---------------------------------  248 (317)
Q Consensus       218 ~-~~~ly~~g~--------~~~~~yd~~~--W~~v~-----~~~~~~---------------------------------  248 (317)
                      + +|+||++||        +.++.||+++  |+.++     +++...                                 
T Consensus       295 ~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~y  374 (656)
T 1k3i_A          295 MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWY  374 (656)
T ss_dssp             CTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEE
T ss_pred             ecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeee
Confidence            7 999999998        4689999876  99973     232110                                 


Q ss_pred             ----------------------ccccEEEE---EECCeEEEEeCcccCCCCceecccCc---ceeEeecCCCCCceeecc
Q 021080          249 ----------------------RRIGFAMI---GMGDDIYVIGGVIGPDRWNWDIKPMS---DVDVLTVGAERPTWRQVS  300 (317)
Q Consensus       249 ----------------------~r~~~~~~---~~~~~lyv~GG~~~~~~~~~~~~~~~---~v~~yd~~~~~~~W~~~~  300 (317)
                                            .+..++++   ..+++||++||.......    ...+   .+++||++++  +|..+.
T Consensus       375 d~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~----~~~~~~~~v~~yd~~~~--~W~~~~  448 (656)
T 1k3i_A          375 YTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS----DATTNAHIITLGEPGTS--PNTVFA  448 (656)
T ss_dssp             ECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS----BCCCCEEEEECCSTTSC--CEEEEC
T ss_pred             ecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC----CcCCcceEEEcCCCCCC--CeeEEc
Confidence                                  01122333   258999999997543211    1233   7899999999  999986


Q ss_pred             --cCCCCCCceeeeeEe
Q 021080          301 --PMTRCRGTILGCTQL  315 (317)
Q Consensus       301 --~~p~~~~~~~~~~~~  315 (317)
                        +||.+|.. ++++++
T Consensus       449 ~~~mp~~R~~-~~~~~l  464 (656)
T 1k3i_A          449 SNGLYFARTF-HTSVVL  464 (656)
T ss_dssp             TTCCSSCCBS-CEEEEC
T ss_pred             cCCCCCCccc-CCeEEC
Confidence              89999998 565554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.75  E-value=3.7e-06  Score=77.09  Aligned_cols=46  Identities=22%  Similarity=0.283  Sum_probs=41.0

Q ss_pred             CcCCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhHHHH
Q 021080            3 ELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKAR   48 (317)
Q Consensus         3 ~~~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~~~~   48 (317)
                      +++..||+|++..||+.|+..++.+++.|||+|+.++.++.+-+..
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~   62 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK   62 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhh
Confidence            5688999999999999999999999999999999998887665543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.72  E-value=4.7e-06  Score=76.62  Aligned_cols=42  Identities=29%  Similarity=0.395  Sum_probs=37.9

Q ss_pred             CcCCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcC-hhh
Q 021080            3 ELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRS-PEL   44 (317)
Q Consensus         3 ~~~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s-~~~   44 (317)
                      +++..||+|++.+||+.|+..++.+++.|||+|+.++.+ +.+
T Consensus        13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~   55 (464)
T 3v7d_B           13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   55 (464)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHH
T ss_pred             CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            356789999999999999999999999999999999987 543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.69  E-value=9.1e-07  Score=81.04  Aligned_cols=44  Identities=25%  Similarity=0.339  Sum_probs=38.5

Q ss_pred             CcCCCCcHH----HHHHHhccCCCCchhhhhhcCHhHHHhhcChhhHH
Q 021080            3 ELIEGLPDA----VALRCLARVPFFLHPKLELVSRSWRAAIRSPELFK   46 (317)
Q Consensus         3 ~~~~~Lp~d----~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~~   46 (317)
                      +++..||+|    ++..||+.|+..++.+++.|||+|+.++.++.+-+
T Consensus         9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~   56 (435)
T 1p22_A            9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK   56 (435)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred             ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            456779999    99999999999999999999999999987766543

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.54  E-value=6.6e-08  Score=61.41  Aligned_cols=43  Identities=19%  Similarity=0.243  Sum_probs=38.5

Q ss_pred             CcCCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhH
Q 021080            3 ELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELF   45 (317)
Q Consensus         3 ~~~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~   45 (317)
                      ..|..||+|++.+||+++|..++.+++.|||+|+.++.++.+-
T Consensus         7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW   49 (53)
T 1fs1_A            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   49 (53)
T ss_dssp             --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence            4688999999999999999999999999999999999888753

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.12  E-value=1.4e-06  Score=75.22  Aligned_cols=49  Identities=24%  Similarity=0.421  Sum_probs=44.7

Q ss_pred             CcCCCCcHHHHHHHhccCCCCchh-hhhhcCHhHHHhhcChhhHHHHHhc
Q 021080            3 ELIEGLPDAVALRCLARVPFFLHP-KLELVSRSWRAAIRSPELFKARQEV   51 (317)
Q Consensus         3 ~~~~~Lp~d~~~~~l~r~p~~~~~-~~~~v~k~w~~l~~s~~~~~~~~~~   51 (317)
                      ..++.||+|++++||++||.+++. ++++|||+|+.++.++.|-+.+...
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~   98 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQ   98 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhc
Confidence            467899999999999999999999 9999999999999999988776654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.03  E-value=0.0024  Score=55.93  Aligned_cols=184  Identities=11%  Similarity=-0.079  Sum_probs=109.3

Q ss_pred             CCceEEEeCCCCCEeecC-----CCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCC
Q 021080           66 ENLWQLYDPLRDLWITLP-----VLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGF  140 (317)
Q Consensus        66 ~~~~~~yd~~~~~W~~~~-----~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~  140 (317)
                      ...+..||+.+++...--     ..+.   +.....++..++++|+.....                             
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~l---g~~~~~i~~~~~~lyv~~~~~-----------------------------   63 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKL---GDVAQSMVIRDGIGWIVVNNS-----------------------------   63 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCC---BSCEEEEEEETTEEEEEEGGG-----------------------------
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCccc---CccceEEEEECCEEEEEEcCC-----------------------------
Confidence            568999999998875421     1111   133355677899999998632                             


Q ss_pred             CCCcCCCceeEEeeCCCCce-eeCCCCCccCCCceEEEE-ECCEEEEEecCceeEEEEeCCCCcEE-eccCCc------c
Q 021080          141 TSCRKSISQAEMYDPEKDVW-VPIPDLHRTHNSACTGVV-IGGKVHVLHKGLSTVQVLDHMGLGWT-VEDYGW------L  211 (317)
Q Consensus       141 ~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~~r~~~~~~~-~~g~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~------~  211 (317)
                             ..+.++|+.+.+- ..++....+    ...++ -++++|+.......+.++|+.+.+-. .++...      .
T Consensus        64 -------~~v~viD~~t~~~~~~i~~~~~p----~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~  132 (328)
T 3dsm_A           64 -------HVIFAIDINTFKEVGRITGFTSP----RYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGS  132 (328)
T ss_dssp             -------TEEEEEETTTCCEEEEEECCSSE----EEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCB
T ss_pred             -------CEEEEEECcccEEEEEcCCCCCC----cEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCC
Confidence                   4566777777665 233333223    22333 68899999754678999999988743 233222      2


Q ss_pred             CCcEEEEcCeEEEEe---CcEEEEecCCceEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEee
Q 021080          212 QGPMAIVHDSVYLMS---HGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLT  288 (317)
Q Consensus       212 ~~~~~~~~~~ly~~g---~~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd  288 (317)
                      +..++..++++|+..   .+.+..+|+++-+.+..++.. .......+.-+|++|+...........  ....+.+.++|
T Consensus       133 p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~--~~~~~~v~~id  209 (328)
T 3dsm_A          133 TEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPY--GYEAPSLYRID  209 (328)
T ss_dssp             CCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSS--CBCCCEEEEEE
T ss_pred             cceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCcc--ccCCceEEEEE
Confidence            345666789999996   468999998873333333210 111112223368888875322111000  00135799999


Q ss_pred             cCCCCCcee
Q 021080          289 VGAERPTWR  297 (317)
Q Consensus       289 ~~~~~~~W~  297 (317)
                      ++++  +..
T Consensus       210 ~~t~--~v~  216 (328)
T 3dsm_A          210 AETF--TVE  216 (328)
T ss_dssp             TTTT--EEE
T ss_pred             CCCC--eEE
Confidence            9988  544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.00  E-value=0.0029  Score=55.39  Aligned_cols=180  Identities=12%  Similarity=-0.018  Sum_probs=104.9

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCE-eecCCCCccccccCCeeEEE-eCCEEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLW-ITLPVLPSKIRHLAHFGVVS-TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS  132 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W-~~~~~~p~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  132 (317)
                      ++.+|+.... ...+..+|+.+.+- .+++....      ...++. .++++||.....                     
T Consensus        53 ~~~lyv~~~~-~~~v~viD~~t~~~~~~i~~~~~------p~~i~~~~~g~lyv~~~~~---------------------  104 (328)
T 3dsm_A           53 DGIGWIVVNN-SHVIFAIDINTFKEVGRITGFTS------PRYIHFLSDEKAYVTQIWD---------------------  104 (328)
T ss_dssp             TTEEEEEEGG-GTEEEEEETTTCCEEEEEECCSS------EEEEEEEETTEEEEEEBSC---------------------
T ss_pred             CCEEEEEEcC-CCEEEEEECcccEEEEEcCCCCC------CcEEEEeCCCeEEEEECCC---------------------
Confidence            5678877652 46799999998876 34432222      244444 678999987431                     


Q ss_pred             ecccCCCCCCCcCCCceeEEeeCCCCceee---CCCCCccCCCceEEEEECCEEEEEec-CceeEEEEeCCCCcEEe-cc
Q 021080          133 YDPVTRGFTSCRKSISQAEMYDPEKDVWVP---IPDLHRTHNSACTGVVIGGKVHVLHK-GLSTVQVLDHMGLGWTV-ED  207 (317)
Q Consensus       133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~---~~~~p~~~r~~~~~~~~~g~lyv~gG-~~~~v~~yd~~~~~W~~-~~  207 (317)
                                     ..+.++|+.+++-..   ++............++.++++|+..- ..+.+.++|+.+++... ++
T Consensus       105 ---------------~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~  169 (328)
T 3dsm_A          105 ---------------YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELT  169 (328)
T ss_dssp             ---------------SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred             ---------------CeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence                           456677777765432   22210000011223447999999964 46789999999987542 32


Q ss_pred             CCccCCcEEE-EcCeEEEEeC------------cEEEEecCCceEEEeccccccccccEEEEEE--CCeEEEEeCcccCC
Q 021080          208 YGWLQGPMAI-VHDSVYLMSH------------GLIIKQHRDVRKVVASASEFRRRIGFAMIGM--GDDIYVIGGVIGPD  272 (317)
Q Consensus       208 ~~~~~~~~~~-~~~~ly~~g~------------~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~  272 (317)
                      ....+..++. -+|++|+...            +.++.+|+++-+.+..+..+.......++..  ++.||+..+     
T Consensus       170 ~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-----  244 (328)
T 3dsm_A          170 IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-----  244 (328)
T ss_dssp             CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-----
T ss_pred             cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-----
Confidence            2222233333 3688988864            4699999887333322221112222344444  567888643     


Q ss_pred             CCceecccCcceeEeecCCC
Q 021080          273 RWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       273 ~~~~~~~~~~~v~~yd~~~~  292 (317)
                                .+++||++++
T Consensus       245 ----------~v~~~d~~t~  254 (328)
T 3dsm_A          245 ----------DIWRMPVEAD  254 (328)
T ss_dssp             ----------SEEEEETTCS
T ss_pred             ----------EEEEEECCCC
Confidence                      5678888877

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.99  E-value=0.0016  Score=54.61  Aligned_cols=153  Identities=14%  Similarity=0.003  Sum_probs=102.4

Q ss_pred             CCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCC
Q 021080           93 AHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNS  172 (317)
Q Consensus        93 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~  172 (317)
                      +-..+...++.+|+..|..+                                  .+.+.++|+++++=..--+++.. .+
T Consensus        22 ftqGL~~~~~~LyestG~~g----------------------------------~S~v~~vD~~tgkv~~~~~l~~~-~f   66 (243)
T 3mbr_X           22 FTEGLFYLRGHLYESTGETG----------------------------------RSSVRKVDLETGRILQRAEVPPP-YF   66 (243)
T ss_dssp             CEEEEEEETTEEEEEECCTT----------------------------------SCEEEEEETTTCCEEEEEECCTT-CC
T ss_pred             ccccEEEECCEEEEECCCCC----------------------------------CceEEEEECCCCCEEEEEeCCCC-cc
Confidence            44467778899999998643                                  25677888888876555566655 56


Q ss_pred             ceEEEEECCEEEEEecCceeEEEEeCCCCcE-EeccCCccCCcEEEEcCeEEEEeC-cEEEEecCCceEEEeccccc---
Q 021080          173 ACTGVVIGGKVHVLHKGLSTVQVLDHMGLGW-TVEDYGWLQGPMAIVHDSVYLMSH-GLIIKQHRDVRKVVASASEF---  247 (317)
Q Consensus       173 ~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~ly~~g~-~~~~~yd~~~W~~v~~~~~~---  247 (317)
                      +...+..+++||++....+.+.+||+.+.+- ..++........+.-++++|+..+ +.++.+|+++-+.+..++..   
T Consensus        67 geGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g  146 (243)
T 3mbr_X           67 GAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG  146 (243)
T ss_dssp             EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred             eeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC
Confidence            6667788999999987788999999988763 233332223344444678999877 78999999985544444321   


Q ss_pred             cc-cccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          248 RR-RIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       248 ~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .+ +.--.+...+|+||+---            ..++|.+-|++++
T Consensus       147 ~~~~~lNeLe~~~G~lyanvw------------~s~~I~vIDp~tG  180 (243)
T 3mbr_X          147 RPLDNLNELEWVNGELLANVW------------LTSRIARIDPASG  180 (243)
T ss_dssp             EECCCEEEEEEETTEEEEEET------------TTTEEEEECTTTC
T ss_pred             cccccceeeEEeCCEEEEEEC------------CCCeEEEEECCCC
Confidence            11 111224455888885321            2347888888887

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.88  E-value=0.0016  Score=57.90  Aligned_cols=113  Identities=16%  Similarity=0.097  Sum_probs=71.5

Q ss_pred             ceEEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCccCCcEEEEcCeEEEEeC-cEEEEecCCc----eEEEeccc
Q 021080          173 ACTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQGPMAIVHDSVYLMSH-GLIIKQHRDV----RKVVASAS  245 (317)
Q Consensus       173 ~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~ly~~g~-~~~~~yd~~~----W~~v~~~~  245 (317)
                      ....++.++++|+... ...+.++|..+++  |+...........+..++.+|+... +.++.+|.++    |+.-...+
T Consensus        96 ~~~~~~~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~  174 (376)
T 3q7m_A           96 SGGVTVSGGHVYIGSE-KAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMP  174 (376)
T ss_dssp             EEEEEEETTEEEEEET-TSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-
T ss_pred             ccCceEeCCEEEEEcC-CCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC
Confidence            3445678999998654 4679999998775  8765433223344566888888764 7899999754    98755433


Q ss_pred             cccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeec
Q 021080          246 EFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV  299 (317)
Q Consensus       246 ~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~  299 (317)
                      ....+.....+..++.||+- ..            ...+..||+++++..|+.-
T Consensus       175 ~~~~~~~~~~~~~~~~v~~g-~~------------~g~l~~~d~~tG~~~w~~~  215 (376)
T 3q7m_A          175 SLSLRGESAPTTAFGAAVVG-GD------------NGRVSAVLMEQGQMIWQQR  215 (376)
T ss_dssp             ----CCCCCCEEETTEEEEC-CT------------TTEEEEEETTTCCEEEEEE
T ss_pred             ceeecCCCCcEEECCEEEEE-cC------------CCEEEEEECCCCcEEEEEe
Confidence            21122223344557777762 21            1267889998887788764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.84  E-value=0.0019  Score=54.75  Aligned_cols=151  Identities=9%  Similarity=-0.080  Sum_probs=98.5

Q ss_pred             eeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCce
Q 021080           95 FGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSAC  174 (317)
Q Consensus        95 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~  174 (317)
                      ..+...++.+|+..|..+                                  .+.+.++|+++++=..--+++.. .++.
T Consensus        46 qGL~~~~~~LyestG~~g----------------------------------~S~v~~vD~~Tgkv~~~~~l~~~-~Fge   90 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNG----------------------------------RSSIRKVDIESGKTLQQIELGKR-YFGE   90 (262)
T ss_dssp             EEEEEETTEEEEEEEETT----------------------------------EEEEEEECTTTCCEEEEEECCTT-CCEE
T ss_pred             ceEEEECCEEEEECCCCC----------------------------------CceEEEEECCCCcEEEEEecCCc-ccee
Confidence            455666899999998643                                  25677788887765444445444 4555


Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCcE-EeccCCccCCcEEEEcCeEEEEeC-cEEEEecCCceEEEecccccc-ccc
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLGW-TVEDYGWLQGPMAIVHDSVYLMSH-GLIIKQHRDVRKVVASASEFR-RRI  251 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~ly~~g~-~~~~~yd~~~W~~v~~~~~~~-~r~  251 (317)
                      ..+..+++||++....+.+.+||+.+.+- ..++........+.-++++|+..+ +.++.+|+++-+.+..++... .+.
T Consensus        91 Git~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~  170 (262)
T 3nol_A           91 GISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEE  170 (262)
T ss_dssp             EEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEE
T ss_pred             EEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcc
Confidence            67788999999987788999999988763 334432223445545677888876 689999999855554444210 111


Q ss_pred             --c-EEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          252 --G-FAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       252 --~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                        . -.+...+|+||+--            ...+.|.+-|++++
T Consensus       171 ~~~lNELe~~~G~lyan~------------w~~~~I~vIDp~tG  202 (262)
T 3nol_A          171 LPELNELEWVDGEIFANV------------WQTNKIVRIDPETG  202 (262)
T ss_dssp             CCCEEEEEEETTEEEEEE------------TTSSEEEEECTTTC
T ss_pred             ccccceeEEECCEEEEEE------------ccCCeEEEEECCCC
Confidence              1 12344588888632            12347888899887

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.83  E-value=0.0026  Score=53.28  Aligned_cols=172  Identities=10%  Similarity=-0.022  Sum_probs=108.4

Q ss_pred             CceEEEEEeCC-CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           55 ENLLCVCAFDP-ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        55 ~~~l~v~gg~~-~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      ++.||+..|.. .+.+..+|+.+++=..-.+++..   ..+..++..+++||+....+                      
T Consensus        30 ~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~---~fgeGi~~~~~~ly~ltw~~----------------------   84 (243)
T 3mbr_X           30 RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP---YFGAGIVAWRDRLIQLTWRN----------------------   84 (243)
T ss_dssp             TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT---CCEEEEEEETTEEEEEESSS----------------------
T ss_pred             CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC---cceeEEEEeCCEEEEEEeeC----------------------
Confidence            56888887754 67899999999987665566653   56677888999999986532                      


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcE-EeccCC---
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGW-TVEDYG---  209 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W-~~~~~~---  209 (317)
                                    ..+++||+++.+=.  ..++.+ ..+-+.+..+++||+.-| .+.+..+|+++.+- ..++..   
T Consensus        85 --------------~~v~v~D~~tl~~~--~ti~~~-~~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g  146 (243)
T 3mbr_X           85 --------------HEGFVYDLATLTPR--ARFRYP-GEGWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGG  146 (243)
T ss_dssp             --------------SEEEEEETTTTEEE--EEEECS-SCCCEEEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETT
T ss_pred             --------------CEEEEEECCcCcEE--EEEeCC-CCceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCC
Confidence                          45666776654422  222222 223344455678999887 77899999998753 222211   


Q ss_pred             cc---CCcEEEEcCeEEEEeC--cEEEEecCCc-----eEEEecccccccc-------ccEEEEEE--CCeEEEEeCcc
Q 021080          210 WL---QGPMAIVHDSVYLMSH--GLIIKQHRDV-----RKVVASASEFRRR-------IGFAMIGM--GDDIYVIGGVI  269 (317)
Q Consensus       210 ~~---~~~~~~~~~~ly~~g~--~~~~~yd~~~-----W~~v~~~~~~~~r-------~~~~~~~~--~~~lyv~GG~~  269 (317)
                      .+   ..-+...++++|+...  +.+...|+++     |-.++.+.....+       .--+++..  ++++||.|-.-
T Consensus       147 ~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w  225 (243)
T 3mbr_X          147 RPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW  225 (243)
T ss_dssp             EECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred             cccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence            11   1123346899998864  7899999987     6665544321111       11334443  57888887643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.81  E-value=0.004  Score=55.35  Aligned_cols=146  Identities=14%  Similarity=0.116  Sum_probs=85.9

Q ss_pred             cCceEEEEEeCCCCceEEEeCCCCC--EeecCCCCcc----ccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccc
Q 021080           54 SENLLCVCAFDPENLWQLYDPLRDL--WITLPVLPSK----IRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFAT  127 (317)
Q Consensus        54 ~~~~l~v~gg~~~~~~~~yd~~~~~--W~~~~~~p~~----~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  127 (317)
                      .++.||+...  ...+++||..+++  |+.-......    .........+..++.||+....                 
T Consensus        52 ~~~~v~~~~~--~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-----------------  112 (376)
T 3q7m_A           52 ADNVVYAADR--AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-----------------  112 (376)
T ss_dssp             ETTEEEEECT--TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT-----------------
T ss_pred             ECCEEEEEcC--CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC-----------------
Confidence            3677887654  3489999998764  7643221100    0012234456778889886531                 


Q ss_pred             cceeEecccCCCCCCCcCCCceeEEeeCCCC--ceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc--E
Q 021080          128 NEVWSYDPVTRGFTSCRKSISQAEMYDPEKD--VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG--W  203 (317)
Q Consensus       128 ~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W  203 (317)
                                          ..+.++|.+++  .|+.-..-  .  .....++.++.+|+... ...+..||+.+++  |
T Consensus       113 --------------------g~l~a~d~~tG~~~W~~~~~~--~--~~~~p~~~~~~v~v~~~-~g~l~~~d~~tG~~~W  167 (376)
T 3q7m_A          113 --------------------AQVYALNTSDGTVAWQTKVAG--E--ALSRPVVSDGLVLIHTS-NGQLQALNEADGAVKW  167 (376)
T ss_dssp             --------------------SEEEEEETTTCCEEEEEECSS--C--CCSCCEEETTEEEEECT-TSEEEEEETTTCCEEE
T ss_pred             --------------------CEEEEEECCCCCEEEEEeCCC--c--eEcCCEEECCEEEEEcC-CCeEEEEECCCCcEEE
Confidence                                34556666655  36543211  1  11223466888888654 4579999998775  8


Q ss_pred             EeccCCcc-----CCcEEEEcCeEEEEeC-cEEEEecCCc----eEEEec
Q 021080          204 TVEDYGWL-----QGPMAIVHDSVYLMSH-GLIIKQHRDV----RKVVAS  243 (317)
Q Consensus       204 ~~~~~~~~-----~~~~~~~~~~ly~~g~-~~~~~yd~~~----W~~v~~  243 (317)
                      +.......     ....+..++.+|+... +.++.+|+++    |+.-..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~  217 (376)
T 3q7m_A          168 TVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRIS  217 (376)
T ss_dssp             EEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECC
T ss_pred             EEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecc
Confidence            76543222     1344556888887653 6899999764    887543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.70  E-value=0.002  Score=54.59  Aligned_cols=172  Identities=8%  Similarity=-0.065  Sum_probs=106.1

Q ss_pred             CceEEEEEeCC-CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           55 ENLLCVCAFDP-ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        55 ~~~l~v~gg~~-~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      ++.||+..|.. .+.+..+|+.+++-..--+++..   .++..++..+++||+....+                      
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~---~FgeGit~~g~~ly~ltw~~----------------------  106 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR---YFGEGISDWKDKIVGLTWKN----------------------  106 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT---CCEEEEEEETTEEEEEESSS----------------------
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc---cceeEEEEeCCEEEEEEeeC----------------------
Confidence            56899888754 56899999999987544455542   45566888999999996532                      


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc-EEeccCCc--
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG-WTVEDYGW--  210 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~-W~~~~~~~--  210 (317)
                                    ..+.+||+++.+=.  ..++.+ -.+-+.+..++.||+.-| .+.+..+|+++.+ -..++...  
T Consensus       107 --------------~~v~v~D~~t~~~~--~ti~~~-~eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g  168 (262)
T 3nol_A          107 --------------GLGFVWNIRNLRQV--RSFNYD-GEGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHG  168 (262)
T ss_dssp             --------------SEEEEEETTTCCEE--EEEECS-SCCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETT
T ss_pred             --------------CEEEEEECccCcEE--EEEECC-CCceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCC
Confidence                          45666776665432  122222 222234445667888877 6789999999865 23333211  


Q ss_pred             -cCC---cEEEEcCeEEEEeC--cEEEEecCCc-----eEEEecccccc------ccccEEEEEE--CCeEEEEeCcc
Q 021080          211 -LQG---PMAIVHDSVYLMSH--GLIIKQHRDV-----RKVVASASEFR------RRIGFAMIGM--GDDIYVIGGVI  269 (317)
Q Consensus       211 -~~~---~~~~~~~~ly~~g~--~~~~~yd~~~-----W~~v~~~~~~~------~r~~~~~~~~--~~~lyv~GG~~  269 (317)
                       +..   .+...+|+||+...  +.+...|+++     |-.++.+....      ...-.+++..  ++++||.|-.-
T Consensus       169 ~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W  246 (262)
T 3nol_A          169 EELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW  246 (262)
T ss_dssp             EECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred             ccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence             101   24456899998864  7899999987     55555443211      0111344444  46788877643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.65  E-value=0.0048  Score=52.30  Aligned_cols=148  Identities=13%  Similarity=-0.046  Sum_probs=96.2

Q ss_pred             eeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCce
Q 021080           95 FGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSAC  174 (317)
Q Consensus        95 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~  174 (317)
                      ..+...++.+|+..|..+                                    .+.++|+++++=..-- ++.. .++.
T Consensus        58 qGL~~~~~~Ly~stG~~g------------------------------------~v~~iD~~Tgkv~~~~-l~~~-~Fge   99 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQG------------------------------------TLRQLSLESAQPVWME-RLGN-IFAE   99 (268)
T ss_dssp             EEEEEETTEEEEEETTTT------------------------------------EEEECCSSCSSCSEEE-ECTT-CCEE
T ss_pred             ceEEEECCEEEEEcCCCC------------------------------------EEEEEECCCCcEEeEE-CCCC-ccee
Confidence            456677899999998642                                    2566777766543222 4433 4555


Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCcE-EeccCCccCCcEEEEcCeEEEEeC-cEEEEecCCceEEEecccccc-cc-
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLGW-TVEDYGWLQGPMAIVHDSVYLMSH-GLIIKQHRDVRKVVASASEFR-RR-  250 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~ly~~g~-~~~~~yd~~~W~~v~~~~~~~-~r-  250 (317)
                      ..+..+++||++....+.+.+||+.+.+- ..++........+.-+++||+..+ +.++.+|+++-+.+..++... ++ 
T Consensus       100 Git~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~  179 (268)
T 3nok_A          100 GLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP  179 (268)
T ss_dssp             EEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred             EEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc
Confidence            56778899999987788999999988763 344433224455656778999986 789999999855555444211 11 


Q ss_pred             --ccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          251 --IGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       251 --~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                        .--.+...+|+||+--            ...++|.+-|++++
T Consensus       180 v~~lNeLe~~dG~lyanv------------w~s~~I~vIDp~TG  211 (268)
T 3nok_A          180 VELINELECANGVIYANI------------WHSSDVLEIDPATG  211 (268)
T ss_dssp             CCCEEEEEEETTEEEEEE------------TTCSEEEEECTTTC
T ss_pred             cccccccEEeCCEEEEEE------------CCCCeEEEEeCCCC
Confidence              1112344588888521            12347888899887

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.50  E-value=0.02  Score=48.63  Aligned_cols=132  Identities=6%  Similarity=-0.112  Sum_probs=82.8

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc-EEeccCC-ccCCcEEEEcCeEEEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG-WTVEDYG-WLQGPMAIVHDSVYLM  225 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~-W~~~~~~-~~~~~~~~~~~~ly~~  225 (317)
                      +.+.++|+.+++=..--+++.. .+....+..+++||+.....+.+.+||+.+.+ =..++.. +....++.-++++|+.
T Consensus        44 s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs  122 (266)
T 2iwa_A           44 SSVRQVALQTGKVENIHKMDDS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGS  122 (266)
T ss_dssp             CEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEE
T ss_pred             CEEEEEECCCCCEEEEEecCCC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEE
Confidence            5677788877764433233333 34455667788999998777889999998765 2334322 2222333335679988


Q ss_pred             eC-cEEEEecCCceEEEecccccc-cc---ccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          226 SH-GLIIKQHRDVRKVVASASEFR-RR---IGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       226 g~-~~~~~yd~~~W~~v~~~~~~~-~r---~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .+ +.+..+|+++-+.+..++... ++   .-..+...+++||+--.            ..++|.+-|++++
T Consensus       123 ~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~------------~~~~V~vID~~tg  182 (266)
T 2iwa_A          123 DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIW------------QTDCIARISAKDG  182 (266)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET------------TSSEEEEEETTTC
T ss_pred             CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecC------------CCCeEEEEECCCC
Confidence            76 789999998866555555211 01   11233344888886532            2357888999877

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.47  E-value=0.016  Score=49.29  Aligned_cols=171  Identities=8%  Similarity=-0.034  Sum_probs=104.8

Q ss_pred             CceEEEEEeC-CCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           55 ENLLCVCAFD-PENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        55 ~~~l~v~gg~-~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      ++.||+..|. ..+.+..+|+.+++=..--+++..   .....++..+++||+..-.+                      
T Consensus        31 dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~---~fgeGi~~~g~~lyv~t~~~----------------------   85 (266)
T 2iwa_A           31 NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS---YFGEGLTLLNEKLYQVVWLK----------------------   85 (266)
T ss_dssp             TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT---CCEEEEEEETTEEEEEETTC----------------------
T ss_pred             CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC---cceEEEEEeCCEEEEEEecC----------------------
Confidence            3689998774 368999999999986543344432   34456777899999997532                      


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCcee-eCCC-CCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc-EEeccCCc
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWV-PIPD-LHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG-WTVEDYGW  210 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~-~~~~-~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~-W~~~~~~~  210 (317)
                                    ..+.+||+.+.+=. .++- ++.+    ...+.-++++|+.-| .+.+..+|+++.+ -..++...
T Consensus        86 --------------~~v~viD~~t~~v~~~i~~g~~~g----~glt~Dg~~l~vs~g-s~~l~viD~~t~~v~~~I~Vg~  146 (266)
T 2iwa_A           86 --------------NIGFIYDRRTLSNIKNFTHQMKDG----WGLATDGKILYGSDG-TSILYEIDPHTFKLIKKHNVKY  146 (266)
T ss_dssp             --------------SEEEEEETTTTEEEEEEECCSSSC----CEEEECSSSEEEECS-SSEEEEECTTTCCEEEEEECEE
T ss_pred             --------------CEEEEEECCCCcEEEEEECCCCCe----EEEEECCCEEEEECC-CCeEEEEECCCCcEEEEEEECC
Confidence                          45666776655321 1211 2333    223344567998876 7789999998865 33333211


Q ss_pred             ---c---CCcEEEEcCeEEEEeC--cEEEEecCCceEEEecccccc--c----------cccEEEEEE--CCeEEEEeCc
Q 021080          211 ---L---QGPMAIVHDSVYLMSH--GLIIKQHRDVRKVVASASEFR--R----------RIGFAMIGM--GDDIYVIGGV  268 (317)
Q Consensus       211 ---~---~~~~~~~~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~--~----------r~~~~~~~~--~~~lyv~GG~  268 (317)
                         +   ...+...++++|+...  +.+...|+++++.+..++...  .          ..-.+++..  ++++||.|+.
T Consensus       147 ~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          147 NGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             TTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred             CCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence               0   1123345889998864  799999998865555444210  0          011344444  5689998875


Q ss_pred             c
Q 021080          269 I  269 (317)
Q Consensus       269 ~  269 (317)
                      .
T Consensus       227 ~  227 (266)
T 2iwa_A          227 W  227 (266)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.98  E-value=0.0081  Score=50.91  Aligned_cols=103  Identities=10%  Similarity=-0.019  Sum_probs=75.8

Q ss_pred             eEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEe--CcEEEEecCCceEEEecccccc
Q 021080          174 CTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMS--HGLIIKQHRDVRKVVASASEFR  248 (317)
Q Consensus       174 ~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g--~~~~~~yd~~~W~~v~~~~~~~  248 (317)
                      ....+.++.||+..|....+..+|+++++=...- +..   ...++..+++||++.  .+.++.||+++-+.+...+-  
T Consensus        58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~--  134 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY--  134 (268)
T ss_dssp             EEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC--
T ss_pred             ceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC--
Confidence            4556778999999996556999999988733221 222   233566789999998  48999999999887777773  


Q ss_pred             ccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          249 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       249 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ...+.+++..+++||+.-|             .+.+..+|+++.
T Consensus       135 ~~eGwGLt~Dg~~L~vSdG-------------s~~l~~iDp~T~  165 (268)
T 3nok_A          135 SGEGWGLCYWNGKLVRSDG-------------GTMLTFHEPDGF  165 (268)
T ss_dssp             SSCCCCEEEETTEEEEECS-------------SSEEEEECTTTC
T ss_pred             CCceeEEecCCCEEEEECC-------------CCEEEEEcCCCC
Confidence            3445677788889999865             136788888876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.91  E-value=0.14  Score=42.45  Aligned_cols=181  Identities=15%  Similarity=0.074  Sum_probs=91.4

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe-CCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      ++.+|+.+......+..||+.+...........    ..-.+++.. ++.+|+... .                      
T Consensus        34 ~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~p~~i~~~~~g~l~v~~~-~----------------------   86 (270)
T 1rwi_B           34 AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL----YQPQGLAVDGAGTVYVTDF-N----------------------   86 (270)
T ss_dssp             TCCEEEEECSSSCEEEEECC-----EECCCCSC----CSCCCEEECTTCCEEEEET-T----------------------
T ss_pred             CCCEEEEccCCCCcEEEecCCCcccceEeeCCc----CCcceeEECCCCCEEEEcC-C----------------------
Confidence            445777232234678889987766544422111    122344443 467888764 2                      


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEE--CCEEEEEecCceeEEEEeCCCCcEEeccCCc-
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW-  210 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~--~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~-  210 (317)
                                    ..+.+||+.++.-..+....   ......+.+  +|++|+.......+..||..+.......... 
T Consensus        87 --------------~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  149 (270)
T 1rwi_B           87 --------------NRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL  149 (270)
T ss_dssp             --------------TEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSC
T ss_pred             --------------CEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccC
Confidence                          23455665554433332111   112223333  6789998655567899988776544332111 


Q ss_pred             -cCCcEEEE-cCeEEEEeC--cEEEEecCCceEEEeccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCccee
Q 021080          211 -LQGPMAIV-HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVD  285 (317)
Q Consensus       211 -~~~~~~~~-~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~  285 (317)
                       .+..++.- ++++|+...  +.+..|+.+.-........ ......+++.. +|.||+....            .+.|.
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~g~l~v~~~~------------~~~v~  216 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT-DITAPWGIAVDEAGTVYVTEHN------------TNQVV  216 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS-SCCSEEEEEECTTCCEEEEETT------------TSCEE
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc-CCCCceEEEECCCCCEEEEECC------------CCcEE
Confidence             12334433 578999874  6899999876222111110 11122233433 4588887531            12577


Q ss_pred             EeecCCC
Q 021080          286 VLTVGAE  292 (317)
Q Consensus       286 ~yd~~~~  292 (317)
                      +||+++.
T Consensus       217 ~~~~~~~  223 (270)
T 1rwi_B          217 KLLAGST  223 (270)
T ss_dssp             EECTTCS
T ss_pred             EEcCCCC
Confidence            7887665

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.89  E-value=0.00032  Score=60.08  Aligned_cols=50  Identities=20%  Similarity=0.226  Sum_probs=43.9

Q ss_pred             CCcCCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhHHHHHhc
Q 021080            2 SELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEV   51 (317)
Q Consensus         2 ~~~~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~~~~~~~   51 (317)
                      +..|..||+|++..||+.|+.++++++..|||.|+.+..++.+-+.....
T Consensus         2 ~~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~r   51 (312)
T 3l2o_B            2 ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLR   51 (312)
T ss_dssp             CCHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHS
T ss_pred             cchhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhc
Confidence            34577899999999999999999999999999999999999887665443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.85  E-value=0.033  Score=49.16  Aligned_cols=178  Identities=15%  Similarity=0.117  Sum_probs=91.1

Q ss_pred             ceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           56 NLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        56 ~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      ..+|+.++. ...+..+|..+++-...-..+.     .-.+++..  +..||+.++.+                      
T Consensus         2 ~~l~vs~~~-d~~v~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~d----------------------   53 (391)
T 1l0q_A            2 TFAYIANSE-SDNISVIDVTSNKVTATIPVGS-----NPMGAVISPDGTKVYVANAHS----------------------   53 (391)
T ss_dssp             EEEEEEETT-TTEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSSEEEEEEGGG----------------------
T ss_pred             CEEEEEcCC-CCEEEEEECCCCeEEEEeecCC-----CcceEEECCCCCEEEEECCCC----------------------
Confidence            356666543 4689999998876544322222     11233332  34577777542                      


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEE-CC-EEEEEecCceeEEEEeCCCCcEEeccCCcc
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI-GG-KVHVLHKGLSTVQVLDHMGLGWTVEDYGWL  211 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~-~g-~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~  211 (317)
                                    ..+.+||..+++-...-..  . ..-...+.. ++ .||+.+.....+..||+.+++-...-....
T Consensus        54 --------------~~i~v~d~~~~~~~~~~~~--~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~  116 (391)
T 1l0q_A           54 --------------NDVSIIDTATNNVIATVPA--G-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK  116 (391)
T ss_dssp             --------------TEEEEEETTTTEEEEEEEC--S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             --------------CeEEEEECCCCeEEEEEEC--C-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC
Confidence                          3566677766654332111  1 111122222 34 576766555789999999886433221111


Q ss_pred             -CCcEEEE-cC-eEEEEeC--cEEEEecCCceEEEeccccccccccEEEEEE--CCeEEEEeCcccCCCCceecccCcce
Q 021080          212 -QGPMAIV-HD-SVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGM--GDDIYVIGGVIGPDRWNWDIKPMSDV  284 (317)
Q Consensus       212 -~~~~~~~-~~-~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~v  284 (317)
                       ...++.. ++ .+|+.+.  +.++.+|..+-+.+..++.  ......++..  +..||+.++.+            ..+
T Consensus       117 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~------------~~v  182 (391)
T 1l0q_A          117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV--GRSPKGIAVTPDGTKVYVANFDS------------MSI  182 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTT------------TEE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec--CCCcceEEECCCCCEEEEEeCCC------------CEE
Confidence             1122222 33 4666654  7899999876333333321  1111222222  33566665421            257


Q ss_pred             eEeecCCC
Q 021080          285 DVLTVGAE  292 (317)
Q Consensus       285 ~~yd~~~~  292 (317)
                      .+||+.++
T Consensus       183 ~~~d~~~~  190 (391)
T 1l0q_A          183 SVIDTVTN  190 (391)
T ss_dssp             EEEETTTT
T ss_pred             EEEECCCC
Confidence            88888776

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.79  E-value=0.034  Score=49.13  Aligned_cols=179  Identities=13%  Similarity=0.110  Sum_probs=93.2

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS  132 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  132 (317)
                      +..|++.+. ....+..||..+++-......+.     .-.+++..  +..+|+.++.+                     
T Consensus        85 g~~l~~~~~-~~~~v~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~---------------------  137 (391)
T 1l0q_A           85 GKQVYVTNM-ASSTLSVIDTTSNTVAGTVKTGK-----SPLGLALSPDGKKLYVTNNGD---------------------  137 (391)
T ss_dssp             SSEEEEEET-TTTEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSSEEEEEETTT---------------------
T ss_pred             CCEEEEEEC-CCCEEEEEECCCCeEEEEEeCCC-----CcceEEECCCCCEEEEEeCCC---------------------
Confidence            445655553 23678999998876544322221     11233332  34577776532                     


Q ss_pred             ecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEE-C-CEEEEEecCceeEEEEeCCCCcEEeccCCc
Q 021080          133 YDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI-G-GKVHVLHKGLSTVQVLDHMGLGWTVEDYGW  210 (317)
Q Consensus       133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~-~-g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~  210 (317)
                                     ..+.+||..+++....-.....   ....+.. + ..+|+.++....+..||+.+++-...-...
T Consensus       138 ---------------~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  199 (391)
T 1l0q_A          138 ---------------KTVSVINTVTKAVINTVSVGRS---PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE  199 (391)
T ss_dssp             ---------------TEEEEEETTTTEEEEEEECCSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             ---------------CEEEEEECCCCcEEEEEecCCC---cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC
Confidence                           3566677766654433221111   1122222 3 367777766678999999887643322111


Q ss_pred             cC-CcEEEE--cCeEEEEe----CcEEEEecCCceEEEeccccccccccEEEEEE--CCeEEEEeCcccCCCCceecccC
Q 021080          211 LQ-GPMAIV--HDSVYLMS----HGLIIKQHRDVRKVVASASEFRRRIGFAMIGM--GDDIYVIGGVIGPDRWNWDIKPM  281 (317)
Q Consensus       211 ~~-~~~~~~--~~~ly~~g----~~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~  281 (317)
                      .. ..++..  +..+|+.+    .+.++.||.+..+.+..++.  ......+...  +..||+.++.+            
T Consensus       200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~s~~~d------------  265 (391)
T 1l0q_A          200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGIAVTPDGKKVYVALSFX------------  265 (391)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTT------------
T ss_pred             CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec--CCCccEEEEccCCCEEEEEcCCC------------
Confidence            11 111211  33566664    37899999887555544442  1111222222  33566665432            


Q ss_pred             cceeEeecCCC
Q 021080          282 SDVDVLTVGAE  292 (317)
Q Consensus       282 ~~v~~yd~~~~  292 (317)
                      +.+.+||++++
T Consensus       266 ~~v~v~d~~~~  276 (391)
T 1l0q_A          266 NTVSVIDTATN  276 (391)
T ss_dssp             TEEEEEETTTT
T ss_pred             CEEEEEECCCC
Confidence            26778888766

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.68  E-value=0.1  Score=50.57  Aligned_cols=67  Identities=18%  Similarity=0.205  Sum_probs=46.2

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCc--EEeccC-C-----ccCCcEEEEcCeEEEEeC-------cEEEEecCCc--
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDY-G-----WLQGPMAIVHDSVYLMSH-------GLIIKQHRDV--  237 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~-~-----~~~~~~~~~~~~ly~~g~-------~~~~~yd~~~--  237 (317)
                      ..++.+++||+... ...+.++|..+++  |+.-.. .     ....+.++.++.+|+...       +.++.||.++  
T Consensus       123 ~~a~~~~~v~v~~~-dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~  201 (677)
T 1kb0_A          123 GVALWKGKVYVGAW-DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGE  201 (677)
T ss_dssp             CCEEETTEEEEECT-TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             CceEECCEEEEEcC-CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCc
Confidence            34568899998754 4679999998775  886533 1     112344557889988752       6799999765  


Q ss_pred             --eEEEe
Q 021080          238 --RKVVA  242 (317)
Q Consensus       238 --W~~v~  242 (317)
                        |+.-.
T Consensus       202 ~~W~~~~  208 (677)
T 1kb0_A          202 RKWRWFS  208 (677)
T ss_dssp             EEEEEES
T ss_pred             EEEEecc
Confidence              88644

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.63  E-value=0.28  Score=42.15  Aligned_cols=101  Identities=12%  Similarity=0.124  Sum_probs=55.1

Q ss_pred             CCEEEEEe-cCceeEEEEeCCCCcEEe-cc-CCccCCcEEEE-c-CeEEEEeC-cEEEEecCCceEEEeccccc---ccc
Q 021080          180 GGKVHVLH-KGLSTVQVLDHMGLGWTV-ED-YGWLQGPMAIV-H-DSVYLMSH-GLIIKQHRDVRKVVASASEF---RRR  250 (317)
Q Consensus       180 ~g~lyv~g-G~~~~v~~yd~~~~~W~~-~~-~~~~~~~~~~~-~-~~ly~~g~-~~~~~yd~~~W~~v~~~~~~---~~r  250 (317)
                      ++.+|+.+ +....+..+|+.+.+-.. ++ ........+.. + +.+|+... +.+..+|.++.+.+...+..   ...
T Consensus       152 g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  231 (353)
T 3vgz_A          152 TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEH  231 (353)
T ss_dssp             TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCC
T ss_pred             CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCc
Confidence            35688876 345679999998876332 22 11112233332 3 45777664 78889998774443332210   111


Q ss_pred             ccEEEEEE--CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          251 IGFAMIGM--GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       251 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ...+++..  ++.+|+...            ..+.+.+||++++
T Consensus       232 ~~~~~~~s~dg~~l~~~~~------------~~~~v~~~d~~~~  263 (353)
T 3vgz_A          232 FFINISLDTARQRAFITDS------------KAAEVLVVDTRNG  263 (353)
T ss_dssp             CEEEEEEETTTTEEEEEES------------SSSEEEEEETTTC
T ss_pred             ccceEEECCCCCEEEEEeC------------CCCEEEEEECCCC
Confidence            11223332  456776642            1247889999877

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.53  E-value=0.33  Score=41.70  Aligned_cols=171  Identities=11%  Similarity=0.017  Sum_probs=87.5

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEec
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD  134 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d  134 (317)
                      +..+|+........++.+|+.+.+-...-+....  .........-++.+|+... +                       
T Consensus       152 g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~-~-----------------------  205 (353)
T 3vgz_A          152 TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK--MSTGLALDSEGKRLYTTNA-D-----------------------  205 (353)
T ss_dssp             TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT--TCCCCEEETTTTEEEEECT-T-----------------------
T ss_pred             CCEEEEEecCCCceEEEEcCCCCceEEEecCCCC--ccceEEECCCCCEEEEEcC-C-----------------------
Confidence            4567777644456799999987765432221111  0111222223456776653 1                       


Q ss_pred             ccCCCCCCCcCCCceeEEeeCCCCceeeCCCC-Cc-cCCCceE-EEEE--CCEEEEEecCceeEEEEeCCCCcEEeccCC
Q 021080          135 PVTRGFTSCRKSISQAEMYDPEKDVWVPIPDL-HR-THNSACT-GVVI--GGKVHVLHKGLSTVQVLDHMGLGWTVEDYG  209 (317)
Q Consensus       135 ~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~-p~-~~r~~~~-~~~~--~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~  209 (317)
                                   ..+.+||..+.+-...-.. .. + ..... .++.  ++.+|+.......+..||+.+.+....-..
T Consensus       206 -------------~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~  271 (353)
T 3vgz_A          206 -------------GELITIDTADNKILSRKKLLDDGK-EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA  271 (353)
T ss_dssp             -------------SEEEEEETTTTEEEEEEECCCSSS-CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred             -------------CeEEEEECCCCeEEEEEEcCCCCC-CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence                         3455666666543221111 11 1 11222 2232  456887766667899999988764322222


Q ss_pred             ccCCcEEEE-cC-eEEEEeC--cEEEEecCCceEEEeccccccccccEEEEEE-CC-eEEEEeC
Q 021080          210 WLQGPMAIV-HD-SVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGM-GD-DIYVIGG  267 (317)
Q Consensus       210 ~~~~~~~~~-~~-~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~-~~-~lyv~GG  267 (317)
                      .....++.. ++ .+|+...  +.+..+|.++.+.+...+.  ......++.. ++ .||+...
T Consensus       272 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~  333 (353)
T 3vgz_A          272 PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSVK  333 (353)
T ss_dssp             SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEEE
T ss_pred             CCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEEc
Confidence            122233322 33 5888874  7899999887665555442  1222223322 44 4777653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.50  E-value=0.28  Score=40.55  Aligned_cols=178  Identities=17%  Similarity=0.116  Sum_probs=93.3

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe-CCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      ++.+|+...  ...+..||+.......+.....    ..-..++.. ++++|+.....                      
T Consensus        77 ~g~l~v~~~--~~~i~~~d~~~~~~~~~~~~~~----~~p~~i~~~~~g~l~v~~~~~----------------------  128 (270)
T 1rwi_B           77 AGTVYVTDF--NNRVVTLAAGSNNQTVLPFDGL----NYPEGLAVDTQGAVYVADRGN----------------------  128 (270)
T ss_dssp             TCCEEEEET--TTEEEEECTTCSCCEECCCCSC----SSEEEEEECTTCCEEEEEGGG----------------------
T ss_pred             CCCEEEEcC--CCEEEEEeCCCceEeeeecCCc----CCCcceEECCCCCEEEEECCC----------------------
Confidence            445777664  4578899988765544422111    112334433 56788876431                      


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCC--CCCccCCCceEEEE-ECCEEEEEecCceeEEEEeCCCCcEEeccCCc
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIP--DLHRTHNSACTGVV-IGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW  210 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~~r~~~~~~~-~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~  210 (317)
                                    ..+.+||..+.......  .+..+ .   ..++ -+|++|+.......+..||+.+..-.......
T Consensus       129 --------------~~i~~~~~~~~~~~~~~~~~~~~p-~---~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~  190 (270)
T 1rwi_B          129 --------------NRVVKLAAGSKTQTVLPFTGLNDP-D---GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD  190 (270)
T ss_dssp             --------------TEEEEECTTCCSCEECCCCSCCSC-C---CEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS
T ss_pred             --------------CEEEEEECCCceeEeeccccCCCc-e---eEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccC
Confidence                          23444554444333221  11122 1   1222 25789998765568999999877644332111


Q ss_pred             -c-CCcEEEE-cCeEEEEeC--cEEEEecCCc-eEEEeccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcc
Q 021080          211 -L-QGPMAIV-HDSVYLMSH--GLIIKQHRDV-RKVVASASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSD  283 (317)
Q Consensus       211 -~-~~~~~~~-~~~ly~~g~--~~~~~yd~~~-W~~v~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~  283 (317)
                       . +..++.- +|.+|+...  +.+..|+++. -.......  ....-.+++.. +|+||+....            .+.
T Consensus       191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~--~~~~p~~i~~~~~g~l~v~~~~------------~~~  256 (270)
T 1rwi_B          191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT--GLNTPLAVAVDSDRTVYVADRG------------NDR  256 (270)
T ss_dssp             CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCC--SCSCEEEEEECTTCCEEEEEGG------------GTE
T ss_pred             CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccC--CCCCceeEEECCCCCEEEEECC------------CCE
Confidence             1 1222322 468999874  6899999876 22221111  11112233333 5688887542            236


Q ss_pred             eeEeecCCC
Q 021080          284 VDVLTVGAE  292 (317)
Q Consensus       284 v~~yd~~~~  292 (317)
                      |.+|+....
T Consensus       257 v~~~~~~~~  265 (270)
T 1rwi_B          257 VVKLTSLEH  265 (270)
T ss_dssp             EEEECCCGG
T ss_pred             EEEEcCCCc
Confidence            777777654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=96.37  E-value=0.49  Score=42.10  Aligned_cols=185  Identities=12%  Similarity=0.057  Sum_probs=92.6

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS  132 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  132 (317)
                      +..+++.++. ...+..||..+++.......+....+......+..  ++.+|+.++.+                     
T Consensus       133 ~~~~~~~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d---------------------  190 (433)
T 3bws_A          133 NTRLAIPLLE-DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA---------------------  190 (433)
T ss_dssp             SSEEEEEBTT-SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG---------------------
T ss_pred             CCeEEEEeCC-CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC---------------------
Confidence            4556655542 35699999998887654333221001111222233  67788877642                     


Q ss_pred             ecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEE--CCEEEEEecCceeEEEEeCCCCcEEeccCCc
Q 021080          133 YDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW  210 (317)
Q Consensus       133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~--~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~  210 (317)
                                     ..+.+||..+.+-...-.....  .....+..  +..+|+.++....+..||+.+.+....-...
T Consensus       191 ---------------~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  253 (433)
T 3bws_A          191 ---------------NAVHVFDLKTLAYKATVDLTGK--WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI  253 (433)
T ss_dssp             ---------------TEEEEEETTTCCEEEEEECSSS--SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC
T ss_pred             ---------------CEEEEEECCCceEEEEEcCCCC--CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC
Confidence                           3456677666543221111111  11222232  3467777765678999999887654332211


Q ss_pred             cCCcEEEE--cC-eEEEEe---------CcEEEEecCCceEEEeccccccccccEEEEEE--CCeEEEEeCcccCCCCce
Q 021080          211 LQGPMAIV--HD-SVYLMS---------HGLIIKQHRDVRKVVASASEFRRRIGFAMIGM--GDDIYVIGGVIGPDRWNW  276 (317)
Q Consensus       211 ~~~~~~~~--~~-~ly~~g---------~~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~  276 (317)
                      .....+..  ++ .+++.+         .+.++.||..+-+.+.....  ......++..  ++.+|+.++.+       
T Consensus       254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~-------  324 (433)
T 3bws_A          254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP--PGNKRHIVSGNTENKIYVSDMCC-------  324 (433)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE--EECEEEEEECSSTTEEEEEETTT-------
T ss_pred             CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC--CCCcceEEECCCCCEEEEEecCC-------
Confidence            11111222  34 555554         25788998766332222221  1111122222  34677776532       


Q ss_pred             ecccCcceeEeecCCC
Q 021080          277 DIKPMSDVDVLTVGAE  292 (317)
Q Consensus       277 ~~~~~~~v~~yd~~~~  292 (317)
                           ..+.+||+++.
T Consensus       325 -----~~v~v~d~~~~  335 (433)
T 3bws_A          325 -----SKIEVYDLKEK  335 (433)
T ss_dssp             -----TEEEEEETTTT
T ss_pred             -----CEEEEEECCCC
Confidence                 36788888866

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=96.26  E-value=0.42  Score=43.77  Aligned_cols=188  Identities=13%  Similarity=0.120  Sum_probs=100.2

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEec
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD  134 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d  134 (317)
                      ++.+|++-|   +..+.||..+++...- ..|.-+  .. -++....+++|+|-|.                  ..|+||
T Consensus       158 ~~~~yfFkG---~~yw~yd~~~~~~~~~-~w~gi~--~i-DAA~~~~g~~YfFkG~------------------~y~rfd  212 (460)
T 1qhu_A          158 DEGILFFQG---NRKWFWDLTTGTKKER-SWPAVG--NC-TSALRWLGRYYCFQGN------------------QFLRFN  212 (460)
T ss_dssp             SSEEEEEET---TEEEEEETTTTEEEEE-CCTTSC--CC-SEEEEETTEEEEEETT------------------EEEEEC
T ss_pred             CCeEEEEec---ccEEEEecccceeecc-cCCCCC--cc-chheeeCCceEEEECC------------------EEEEEc
Confidence            455677776   5789999987654321 222211  11 2344557899999884                  477888


Q ss_pred             ccCCCCCCCcCCCceeEEeeCCCCceeeCCC------------------CCccC-CCceEEEE-ECCEEEEEecCceeEE
Q 021080          135 PVTRGFTSCRKSISQAEMYDPEKDVWVPIPD------------------LHRTH-NSACTGVV-IGGKVHVLHKGLSTVQ  194 (317)
Q Consensus       135 ~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~------------------~p~~~-r~~~~~~~-~~g~lyv~gG~~~~v~  194 (317)
                      +.++-....  ....+      ++.|..++.                  .-.+. ... +++. .+|++|++-|  ...+
T Consensus       213 ~~~~~v~~g--yPk~i------s~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~D-Ai~~~~~G~tYFFKg--~~yW  281 (460)
T 1qhu_A          213 PVSGEVPPG--YPLDV------RDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLS-AMVSDNHGATYVFSG--SHYW  281 (460)
T ss_dssp             TTTCCCCTT--CCEEH------HHHTSCCTTCCSCC-------CCCTTTTTCTTCCCC-EEEECTTCCEEEEET--TEEE
T ss_pred             CccCcccCC--CCcch------hhcccCCCCCCCccccccCCccccccccccCCCCcC-EEEecCCCeEEEEeC--CEEE
Confidence            755411110  00000      112322221                  11110 122 2333 5789999966  4566


Q ss_pred             EEeCCCCcEE--eccCCcc----CC-cEEEEcCeEEEEeCcEEEEecCCc-eEEEecccccc------------ccccEE
Q 021080          195 VLDHMGLGWT--VEDYGWL----QG-PMAIVHDSVYLMSHGLIIKQHRDV-RKVVASASEFR------------RRIGFA  254 (317)
Q Consensus       195 ~yd~~~~~W~--~~~~~~~----~~-~~~~~~~~ly~~g~~~~~~yd~~~-W~~v~~~~~~~------------~r~~~~  254 (317)
                      ++|...+.+.  .+...++    .. ++...++++|++-|+.++.|+..+ .+.+...|...            .+.-++
T Consensus       282 R~~~~~~~~~p~~Is~~WpglP~~IDAAf~~~~~~yfFkG~~yw~f~~~~g~~~~~GyPK~I~~~lGlp~~~~~~~IDAA  361 (460)
T 1qhu_A          282 RLDTNRDGWHSWPIAHQWPQGPSTVDAAFSWEDKLYLIQDTKVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAA  361 (460)
T ss_dssp             ECTTGGGCCCCEEGGGTCTTSCSSCSEEEEETTEEEEEETTEEEEEECSBSCEECTTCCEEHHHHHCCCSSCCCSCCCEE
T ss_pred             EEecCCCCcCccchhhhccCCCCCCcEEEEECCeEEEEeCCEEEEEeCCCCceecCCCCeEHHHhccCCCccccCcccEE
Confidence            7766543221  1222222    22 333458899999999999999765 55554433211            112333


Q ss_pred             EEE-ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          255 MIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       255 ~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      +.. ..+++|++-|              +..|.||....
T Consensus       362 ~~~~~~~ktyfFkG--------------~~ywryd~~~~  386 (460)
T 1qhu_A          362 FVCPGSSRLHIMAG--------------RRLWWLDLKSG  386 (460)
T ss_dssp             ECCTTCCEEEEEET--------------TEEEEEEGGGG
T ss_pred             EEeCCCCEEEEEEC--------------CEEEEEECCCC
Confidence            332 3589999977              25677777654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.24  E-value=0.3  Score=46.23  Aligned_cols=66  Identities=17%  Similarity=0.127  Sum_probs=45.2

Q ss_pred             EEEECCEEEEEecCceeEEEEeCCCCc--EEeccCC-----ccCCcEEEEcCeEEEEeC-------cEEEEecCCc----
Q 021080          176 GVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYG-----WLQGPMAIVHDSVYLMSH-------GLIIKQHRDV----  237 (317)
Q Consensus       176 ~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~-----~~~~~~~~~~~~ly~~g~-------~~~~~yd~~~----  237 (317)
                      .++.+++||+... ...+.++|..+++  |+.-...     ....+.++.++++|+...       +.++.||.++    
T Consensus       111 ~~~~~~~v~v~~~-dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          111 LAYGAGQIVKKQA-NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             CEEETTEEEEECT-TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             cEEECCEEEEEeC-CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence            4567999998754 4579999998774  8754321     112233456899988753       6899999865    


Q ss_pred             eEEEe
Q 021080          238 RKVVA  242 (317)
Q Consensus       238 W~~v~  242 (317)
                      |+.-.
T Consensus       190 W~~~~  194 (571)
T 2ad6_A          190 WRAFA  194 (571)
T ss_dssp             EEEES
T ss_pred             EEEcc
Confidence            97644

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.13  E-value=0.074  Score=51.39  Aligned_cols=117  Identities=15%  Similarity=0.093  Sum_probs=75.4

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCcc-----------CCcEEEEcCeEEEEe-CcEEEEecCCc---
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWL-----------QGPMAIVHDSVYLMS-HGLIIKQHRDV---  237 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~-----------~~~~~~~~~~ly~~g-~~~~~~yd~~~---  237 (317)
                      +-++.+++||+... ...+.++|..+++  |+.-.....           ....++.++++|+.. .+.++.+|.++   
T Consensus        61 ~P~v~~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~  139 (668)
T 1kv9_A           61 TPLFHDGVIYTSMS-WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKA  139 (668)
T ss_dssp             CCEEETTEEEEEEG-GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEECCEEEEECC-CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCE
Confidence            34678999999866 4579999988775  986543221           123466789999887 47899999765   


Q ss_pred             -eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeec
Q 021080          238 -RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV  299 (317)
Q Consensus       238 -W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~  299 (317)
                       |+.-..-+........+.+..+++||+-.+....       .....+..||.++++..|+.-
T Consensus       140 ~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~-------~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          140 IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY-------GVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT-------CCBCEEEEEETTTCCEEEEEE
T ss_pred             eeeeccCCCCCcceecCCCEEECCEEEEeCCCCCc-------CCCCEEEEEECCCCcEEEEec
Confidence             9875432211111222334568888874332111       123478999999997789753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.12  E-value=0.096  Score=49.61  Aligned_cols=118  Identities=12%  Similarity=0.068  Sum_probs=74.5

Q ss_pred             EEEEECCEEEEEecCceeEEEEeC-CCCc--EEeccCCcc-----------CCcEEEEcCeEEEEeC-cEEEEecCCc--
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDH-MGLG--WTVEDYGWL-----------QGPMAIVHDSVYLMSH-GLIIKQHRDV--  237 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~-~~~~--W~~~~~~~~-----------~~~~~~~~~~ly~~g~-~~~~~yd~~~--  237 (317)
                      +-++.+++||+.......++++|. .+++  |+.......           ....++.++++|+... +.++++|.++  
T Consensus        57 ~P~v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~  136 (571)
T 2ad6_A           57 APLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGK  136 (571)
T ss_dssp             CCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred             ccEEECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCC
Confidence            345789999998653457999999 7765  986543211           1234667899999864 7899999765  


Q ss_pred             --eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeec
Q 021080          238 --RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV  299 (317)
Q Consensus       238 --W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~  299 (317)
                        |+.-..-+........+.+..+++||+-.+..+.+       ....+..||.++++..|+.-
T Consensus       137 ~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~-------~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          137 INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELG-------VRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGT-------CCCEEEEEETTTCCEEEEEE
T ss_pred             EEEEecCCCCCccceeccCCEEECCEEEEEecCCccC-------CCCEEEEEECCCCcEEEEEc
Confidence              98643221100111122345688888754322211       23478999999987789753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.12  E-value=0.5  Score=39.53  Aligned_cols=98  Identities=7%  Similarity=-0.016  Sum_probs=55.6

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCC---ccCCcEEE-EcCeEEEEeC--c-EEEEecCCc--eEEEecccccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYG---WLQGPMAI-VHDSVYLMSH--G-LIIKQHRDV--RKVVASASEFRRR  250 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~---~~~~~~~~-~~~~ly~~g~--~-~~~~yd~~~--W~~v~~~~~~~~r  250 (317)
                      +|++|+.......+..||+.......+...   ..+..++. -+|.+|+.+.  + .+..|+++.  -..+..... .. 
T Consensus       174 ~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~-~~-  251 (286)
T 1q7f_A          174 KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVK-HA-  251 (286)
T ss_dssp             SSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSC-CS-
T ss_pred             CCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCC-CC-
Confidence            589999876567899999876654444321   11122222 2678999874  4 899999765  222221110 11 


Q ss_pred             ccEEEEE-ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          251 IGFAMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       251 ~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ...+++. -+++||+...   .          +.|.+|++...
T Consensus       252 ~~~~i~~~~~g~l~vs~~---~----------~~v~v~~~~~~  281 (286)
T 1q7f_A          252 QCFDVALMDDGSVVLASK---D----------YRLYIYRYVQL  281 (286)
T ss_dssp             CEEEEEEETTTEEEEEET---T----------TEEEEEECSCC
T ss_pred             cceeEEECCCCcEEEECC---C----------CeEEEEEcccc
Confidence            1123333 3678888742   1          26777777543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.11  E-value=0.53  Score=39.77  Aligned_cols=106  Identities=15%  Similarity=0.018  Sum_probs=61.4

Q ss_pred             EEECCEEEEEecC-ceeEEEEeCCCCc-EEec-cCC------ccCCcEEEEcCeEEEEeC--cEEEEecCCc---eEEEe
Q 021080          177 VVIGGKVHVLHKG-LSTVQVLDHMGLG-WTVE-DYG------WLQGPMAIVHDSVYLMSH--GLIIKQHRDV---RKVVA  242 (317)
Q Consensus       177 ~~~~g~lyv~gG~-~~~v~~yd~~~~~-W~~~-~~~------~~~~~~~~~~~~ly~~g~--~~~~~yd~~~---W~~v~  242 (317)
                      ..-+|++++.... ...++.+|+..+. |+.. ...      .+.......+|.+++...  +.+..||++.   |+.-.
T Consensus        84 ~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~  163 (276)
T 3no2_A           84 ILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKL  163 (276)
T ss_dssp             ECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC
T ss_pred             ECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEEC
Confidence            3457777777654 6778889985442 4422 110      111122334666666653  7899999865   87643


Q ss_pred             ccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeec
Q 021080          243 SASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV  299 (317)
Q Consensus       243 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~  299 (317)
                      ...     .....+..+|.+++.+...            ..|..+|+++++..|+.-
T Consensus       164 ~~~-----~~~~~~~~~g~~~v~~~~~------------~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          164 SGT-----PFSSAFLDNGDCLVACGDA------------HCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             SSC-----CCEEEECTTSCEEEECBTT------------SEEEEECTTTCCEEEEEE
T ss_pred             CCC-----ccceeEcCCCCEEEEeCCC------------CeEEEEeCcCCcEEEEec
Confidence            211     1122333367788776421            257889999776678764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.02  E-value=0.5  Score=45.75  Aligned_cols=65  Identities=18%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             EEEECCEEEEEecCceeEEEEeCCCCc--EEeccC-C-----ccCCcEEEEcCeEEEEeC-------cEEEEecCCc---
Q 021080          176 GVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDY-G-----WLQGPMAIVHDSVYLMSH-------GLIIKQHRDV---  237 (317)
Q Consensus       176 ~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~-~-----~~~~~~~~~~~~ly~~g~-------~~~~~yd~~~---  237 (317)
                      .++.+++||+... ...+.++|..+++  |+.... .     ....+.++.++.+|+-..       +.++.||.++   
T Consensus       117 ~~~~~g~v~v~~~-dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~  195 (689)
T 1yiq_A          117 VAVWKGKVYVGVL-DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE  195 (689)
T ss_dssp             CEEETTEEEEECT-TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             cEEECCEEEEEcc-CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE
Confidence            4578899988754 4679999998775  886543 1     112233557888888642       5799999765   


Q ss_pred             -eEEE
Q 021080          238 -RKVV  241 (317)
Q Consensus       238 -W~~v  241 (317)
                       |+.-
T Consensus       196 ~W~~~  200 (689)
T 1yiq_A          196 AWRFY  200 (689)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence             9864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=95.96  E-value=0.003  Score=55.29  Aligned_cols=41  Identities=17%  Similarity=0.193  Sum_probs=37.0

Q ss_pred             CcCCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChh
Q 021080            3 ELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPE   43 (317)
Q Consensus         3 ~~~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~   43 (317)
                      ..|..||+|++.+|+.+++..+..+++.|||+|+.+..++.
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~   47 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES   47 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence            45789999999999999999999999999999999976554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.93  E-value=0.65  Score=41.26  Aligned_cols=180  Identities=11%  Similarity=0.022  Sum_probs=93.3

Q ss_pred             ceEEEeCCCCCEeecCCCCccccccCCeeEEEe-CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCC
Q 021080           68 LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKS  146 (317)
Q Consensus        68 ~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~  146 (317)
                      .++.+|+.++.+..+..++..   ....+++.. ++.+++.++..                                   
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~-----------------------------------  143 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTG---FQPKSVRFIDNTRLAIPLLED-----------------------------------  143 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECS---SCBCCCEESSSSEEEEEBTTS-----------------------------------
T ss_pred             EEEEECCCCCcceEEEEEcCC---CCceEEEEeCCCeEEEEeCCC-----------------------------------
Confidence            677888877766554433322   111122222 67788777642                                   


Q ss_pred             CceeEEeeCCCCceeeCCCCCc--cCCCceEEEEE--CCEEEEEecCceeEEEEeCCCCcEE-eccCCcc-CCcEEEE--
Q 021080          147 ISQAEMYDPEKDVWVPIPDLHR--THNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLGWT-VEDYGWL-QGPMAIV--  218 (317)
Q Consensus       147 ~~~~~~yd~~t~~W~~~~~~p~--~~r~~~~~~~~--~g~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~~-~~~~~~~--  218 (317)
                       ..+.+||..+++.....+...  ........+.+  ++++++.++....+..||+.+.+-. .+..... ...++..  
T Consensus       144 -~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  222 (433)
T 3bws_A          144 -EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPI  222 (433)
T ss_dssp             -SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETT
T ss_pred             -CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCC
Confidence             346677877776654333211  10112223333  7889998886678999999876532 2221111 1122222  


Q ss_pred             cCeEEEEeC--cEEEEecCCceEEEeccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          219 HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       219 ~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ++.+|+.+.  +.++.||..+-+.+..++.  ...-..++.. +++.+++++.....-.    ..-..|.+||+.++
T Consensus       223 ~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~----~~dg~i~~~d~~~~  293 (433)
T 3bws_A          223 RDLVYCSNWISEDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKELYIAQFSASNQE----SGGGRLGIYSMDKE  293 (433)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSEEEEEEEESCTTC----SCCEEEEEEETTTT
T ss_pred             CCEEEEEecCCCcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCEEEEEECCCCccc----cCCCeEEEEECCCC
Confidence            345777763  7899999877444433332  1111222222 4545555543322100    01236888998876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.84  E-value=0.49  Score=42.44  Aligned_cols=131  Identities=13%  Similarity=0.043  Sum_probs=68.5

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEe-ccCCccCCcEEEEcCeEEEEe
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTV-EDYGWLQGPMAIVHDSVYLMS  226 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~ly~~g  226 (317)
                      ..+.+||..+.+-...............++..+++..+.|+....+..||..+.+-.. +............++.+++.+
T Consensus       233 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g  312 (435)
T 1p22_A          233 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSG  312 (435)
T ss_dssp             SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEE
Confidence            4677788776542211011111022223444577777777767789999998775321 211111222333456555555


Q ss_pred             C--cEEEEecCCceEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          227 H--GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       227 ~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      +  +.+..||..+.+.+..+..  .......+..++..++.|+.++            .|.+||+.+.
T Consensus       313 ~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~l~sg~~dg------------~i~vwd~~~~  366 (435)
T 1p22_A          313 SSDNTIRLWDIECGACLRVLEG--HEELVRCIRFDNKRIVSGAYDG------------KIKVWDLVAA  366 (435)
T ss_dssp             ETTSCEEEEETTTCCEEEEECC--CSSCEEEEECCSSEEEEEETTS------------CEEEEEHHHH
T ss_pred             eCCCeEEEEECCCCCEEEEEeC--CcCcEEEEEecCCEEEEEeCCC------------cEEEEECCCC
Confidence            4  6889999877444443331  1111223444777777776432            4667776543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.81  E-value=0.87  Score=40.85  Aligned_cols=134  Identities=12%  Similarity=0.078  Sum_probs=70.4

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEE-eccCCc-c--CCcEEEEcCeEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWT-VEDYGW-L--QGPMAIVHDSVY  223 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~-~--~~~~~~~~~~ly  223 (317)
                      ..+.+||..+.+-...  +... .........++.+++.|+....+..||..+.+-. .+.... .  .......++.++
T Consensus       299 ~~i~i~d~~~~~~~~~--~~~~-~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  375 (445)
T 2ovr_B          299 TSIRVWDVETGNCIHT--LTGH-QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV  375 (445)
T ss_dssp             SCEEEEETTTCCEEEE--ECCC-CSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEE
T ss_pred             CeEEEEECCCCCEEEE--EcCC-cccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEE
Confidence            4677888877653321  1111 2222344456666777776678999999776532 222111 1  122233456655


Q ss_pred             EEeC--cEEEEecCCceEEEeccc----cccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          224 LMSH--GLIIKQHRDVRKVVASAS----EFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       224 ~~g~--~~~~~yd~~~W~~v~~~~----~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      +.++  +.+..||.+.-+.+..+.    ......-..+... ++.+++.|+.++..        ...+.+||.+.+
T Consensus       376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~--------~~~l~v~df~~~  443 (445)
T 2ovr_B          376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE--------ETKLLVLDFDVD  443 (445)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS--------CCEEEEEECCCC
T ss_pred             EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCC--------ccEEEEEECCCC
Confidence            5554  789999987644443331    0011111222222 45666777766542        236788888764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=95.80  E-value=0.7  Score=38.60  Aligned_cols=100  Identities=7%  Similarity=0.087  Sum_probs=56.4

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCC---ccCCcEEEE-cCeEEEEeC--cEEEEecCCc--eEEEeccccccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYG---WLQGPMAIV-HDSVYLMSH--GLIIKQHRDV--RKVVASASEFRRRI  251 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~---~~~~~~~~~-~~~ly~~g~--~~~~~yd~~~--W~~v~~~~~~~~r~  251 (317)
                      +|++|+.......+..||+.......+...   ..+..++.- ++++|+.+.  +.++.|+++.  -..+..-.  ....
T Consensus       131 ~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g--~~~~  208 (286)
T 1q7f_A          131 KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEG--ITNY  208 (286)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTT--TSCS
T ss_pred             CCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCC--ccCC
Confidence            678999876567899999876654444311   111222222 578999874  7899999765  23332211  0011


Q ss_pred             cEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          252 GFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       252 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ..+++.. +|+||+....+.           ..|.+||++..
T Consensus       209 p~~i~~d~~G~l~v~~~~~~-----------~~i~~~~~~g~  239 (286)
T 1q7f_A          209 PIGVGINSNGEILIADNHNN-----------FNLTIFTQDGQ  239 (286)
T ss_dssp             EEEEEECTTCCEEEEECSSS-----------CEEEEECTTSC
T ss_pred             CcEEEECCCCCEEEEeCCCC-----------EEEEEECCCCC
Confidence            2233332 578888764221           15777886543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.86  Score=39.28  Aligned_cols=52  Identities=13%  Similarity=0.206  Sum_probs=32.1

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEEE--C--CEEEEEecCceeEEEEeCCCC
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--G--GKVHVLHKGLSTVQVLDHMGL  201 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~--~--g~lyv~gG~~~~v~~yd~~~~  201 (317)
                      .+.+||..+++|..+..+... ......+.+  +  +.+++.|+....+..||..+.
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             EEEEEEcCCCceeEeeeecCC-CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence            466778778777665444322 222233332  3  567777776778999998776

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.73  E-value=0.12  Score=49.91  Aligned_cols=117  Identities=17%  Similarity=0.114  Sum_probs=75.6

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCcc-----------CCcEEEEcCeEEEEeC-cEEEEecCCc---
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWL-----------QGPMAIVHDSVYLMSH-GLIIKQHRDV---  237 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~-----------~~~~~~~~~~ly~~g~-~~~~~yd~~~---  237 (317)
                      +-++.+++||+... ...++++|..+++  |+.-.....           ....++.++++|+... +.++.+|.++   
T Consensus        72 ~P~v~~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~  150 (677)
T 1kb0_A           72 TPVVVDGIMYVSAS-WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKE  150 (677)
T ss_dssp             CCEEETTEEEEECG-GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEECCEEEEECC-CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCE
Confidence            34678999999865 4679999998775  986543221           2345667889998864 7899999765   


Q ss_pred             -eEEEec-cccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeec
Q 021080          238 -RKVVAS-ASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV  299 (317)
Q Consensus       238 -W~~v~~-~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~  299 (317)
                       |+.-.. -+........+.+..+++||+..+..+.       .....+..||.++++..|+.-
T Consensus       151 ~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~-------~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          151 VWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY-------GVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             EEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT-------CCBCEEEEEETTTCCEEEEEE
T ss_pred             EeeecCCcCcCcCcccccCcEEECCEEEEEeccccc-------CCCCEEEEEECCCCcEEEEec
Confidence             987533 1100011122334568888875442221       123478999999997789754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.72  E-value=0.13  Score=49.96  Aligned_cols=117  Identities=16%  Similarity=0.121  Sum_probs=74.9

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCcc-----------CCcEEEEcCeEEEEe-CcEEEEecCCc---
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWL-----------QGPMAIVHDSVYLMS-HGLIIKQHRDV---  237 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~-----------~~~~~~~~~~ly~~g-~~~~~~yd~~~---  237 (317)
                      +-++.+++||+.+. ...+.++|..+++  |+.-.....           ....++.++++|+.. .+.++.+|.++   
T Consensus        65 ~P~v~~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~  143 (689)
T 1yiq_A           65 TPIVVDGVMYTTGP-FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQR  143 (689)
T ss_dssp             CCEEETTEEEEECG-GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCE
T ss_pred             cCEEECCEEEEEcC-CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCE
Confidence            34578999999865 4569999998775  986543221           123466788999887 47899999765   


Q ss_pred             -eEEEec-cccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeec
Q 021080          238 -RKVVAS-ASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV  299 (317)
Q Consensus       238 -W~~v~~-~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~  299 (317)
                       |+.-.. -+........+-+..+++||+-.+....       .....+..||.++++..|+.-
T Consensus       144 ~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~-------~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          144 AWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF-------GVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             EEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT-------CCBCEEEEEETTTCCEEEEEE
T ss_pred             eeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc-------CCCCEEEEEECCCCcEEEEec
Confidence             987543 1110111222335568888874322111       123478999999997779753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.71  E-value=0.58  Score=44.30  Aligned_cols=64  Identities=20%  Similarity=0.197  Sum_probs=42.3

Q ss_pred             EEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCc-----cCCcEEEEcC------eEEEEe-------CcEEEEecC
Q 021080          176 GVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGW-----LQGPMAIVHD------SVYLMS-------HGLIIKQHR  235 (317)
Q Consensus       176 ~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~-----~~~~~~~~~~------~ly~~g-------~~~~~~yd~  235 (317)
                      .++.+++||+... ...+.++|..+++  |+......     ...+-++.++      .+|+-.       .+.++.||.
T Consensus       113 ~a~~~~~v~~~t~-dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~  191 (582)
T 1flg_A          113 AAIYGDKVFFGTL-DASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDP  191 (582)
T ss_dssp             CEEETTEEEEEET-TTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECT
T ss_pred             cEEECCEEEEEeC-CCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEEC
Confidence            4568999998654 4579999998775  88543221     1223344566      777643       268999998


Q ss_pred             Cc----eEE
Q 021080          236 DV----RKV  240 (317)
Q Consensus       236 ~~----W~~  240 (317)
                      ++    |+.
T Consensus       192 ~tG~~~W~~  200 (582)
T 1flg_A          192 DTGEEIWMR  200 (582)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCCEEeec
Confidence            65    965

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.67  E-value=0.74  Score=39.02  Aligned_cols=139  Identities=9%  Similarity=-0.110  Sum_probs=68.4

Q ss_pred             eeEEeeCCCCceeeCCCCCccC-CCceEEEE--ECCEEEEEec-----------CceeEEEEeCCCCcEEeccCCcc-CC
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTH-NSACTGVV--IGGKVHVLHK-----------GLSTVQVLDHMGLGWTVEDYGWL-QG  213 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~-r~~~~~~~--~~g~lyv~gG-----------~~~~v~~yd~~~~~W~~~~~~~~-~~  213 (317)
                      .+.+||+++++++.+....... ......+.  -+|++|+..-           ....++.+|+.. +...+..... +.
T Consensus        74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~pn  152 (297)
T 3g4e_A           74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDISN  152 (297)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBEE
T ss_pred             eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecccccc
Confidence            5667888888776653322110 11122232  3678887531           124688888753 3332211111 12


Q ss_pred             cEEEE-cC-eEEEEeC--cEEEEecC--Cc--eE---EEeccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccC
Q 021080          214 PMAIV-HD-SVYLMSH--GLIIKQHR--DV--RK---VVASASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPM  281 (317)
Q Consensus       214 ~~~~~-~~-~ly~~g~--~~~~~yd~--~~--W~---~v~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~  281 (317)
                      ..+.. ++ .+|+.+.  +.++.|+.  +.  ..   .+..++. ....-.+++.. +|+||+..-.            .
T Consensus       153 gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-~~~~p~g~~~d~~G~lwva~~~------------~  219 (297)
T 3g4e_A          153 GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-EEQIPDGMCIDAEGKLWVACYN------------G  219 (297)
T ss_dssp             EEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-GGCEEEEEEEBTTSCEEEEEET------------T
T ss_pred             ceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-CCCCCCeeEECCCCCEEEEEcC------------C
Confidence            22322 33 5888874  67888864  22  21   1222221 01112234443 6788876421            1


Q ss_pred             cceeEeecCCCCCceeecccCC
Q 021080          282 SDVDVLTVGAERPTWRQVSPMT  303 (317)
Q Consensus       282 ~~v~~yd~~~~~~~W~~~~~~p  303 (317)
                      ..|.+||++++  +-...-++|
T Consensus       220 ~~v~~~d~~tG--~~~~~i~~p  239 (297)
T 3g4e_A          220 GRVIRLDPVTG--KRLQTVKLP  239 (297)
T ss_dssp             TEEEEECTTTC--CEEEEEECS
T ss_pred             CEEEEEcCCCc--eEEEEEECC
Confidence            25889999877  543333344

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.65  E-value=0.72  Score=44.43  Aligned_cols=65  Identities=18%  Similarity=0.195  Sum_probs=44.6

Q ss_pred             EEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCc-----cCCcEEEEcCeEEEEeC-------cEEEEecCCc----
Q 021080          176 GVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGW-----LQGPMAIVHDSVYLMSH-------GLIIKQHRDV----  237 (317)
Q Consensus       176 ~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~-----~~~~~~~~~~~ly~~g~-------~~~~~yd~~~----  237 (317)
                      .++.+++||+... ...+.++|..+++  |+......     ...+.++.++.+|+...       +.++.||.++    
T Consensus       113 ~~~~~~~v~v~~~-dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~  191 (668)
T 1kv9_A          113 VALWGDKVYVGTL-DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLA  191 (668)
T ss_dssp             CEEEBTEEEEECT-TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             eEEECCEEEEEcC-CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence            4567899988654 4679999998775  88654211     12333557888887642       5799999865    


Q ss_pred             eEEE
Q 021080          238 RKVV  241 (317)
Q Consensus       238 W~~v  241 (317)
                      |+.-
T Consensus       192 W~~~  195 (668)
T 1kv9_A          192 WRFY  195 (668)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9864

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.61  E-value=0.47  Score=45.15  Aligned_cols=120  Identities=18%  Similarity=0.074  Sum_probs=69.3

Q ss_pred             ECCE----EEEEecCceeEEEEeCCCCc--EEeccCC-----ccCCcEEEEcCeEEEEe-------CcEEEEecCCc---
Q 021080          179 IGGK----VHVLHKGLSTVQVLDHMGLG--WTVEDYG-----WLQGPMAIVHDSVYLMS-------HGLIIKQHRDV---  237 (317)
Q Consensus       179 ~~g~----lyv~gG~~~~v~~yd~~~~~--W~~~~~~-----~~~~~~~~~~~~ly~~g-------~~~~~~yd~~~---  237 (317)
                      .+++    ||+... ...+.++|..+++  |+.-...     ....+-++.++++|+-.       .+.++.||.++   
T Consensus       116 ~~g~~~~rV~v~t~-dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~  194 (599)
T 1w6s_A          116 GDGKTPALILKTQL-DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQ  194 (599)
T ss_dssp             CCSSSCCEEEEECT-TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred             cCCcceeEEEEEcC-CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcE
Confidence            5777    888644 4579999998775  8854321     11223345789988765       26899999875   


Q ss_pred             -eEEEecccccc-----------------------------cc-----c-cEEEEEECCeEEEEeCcccCCC---Cceec
Q 021080          238 -RKVVASASEFR-----------------------------RR-----I-GFAMIGMGDDIYVIGGVIGPDR---WNWDI  278 (317)
Q Consensus       238 -W~~v~~~~~~~-----------------------------~r-----~-~~~~~~~~~~lyv~GG~~~~~~---~~~~~  278 (317)
                       |+.-..-+...                             .+     + ..+.-.-.+.||+-.|....-.   ...+.
T Consensus       195 ~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~  274 (599)
T 1w6s_A          195 VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDN  274 (599)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCc
Confidence             98654332100                             00     0 0111123567787655421100   00001


Q ss_pred             ccCcceeEeecCCCCCceeec
Q 021080          279 KPMSDVDVLTVGAERPTWRQV  299 (317)
Q Consensus       279 ~~~~~v~~yd~~~~~~~W~~~  299 (317)
                      .+...+..+|+++++..|+.-
T Consensus       275 ~y~~sv~Ald~~TG~~~W~~q  295 (599)
T 1w6s_A          275 KWTMTIFGRDADTGEAKFGYQ  295 (599)
T ss_dssp             TTSSEEEEEETTTCCEEEEEE
T ss_pred             cccceEEEEeCCCCceeeEee
Confidence            245679999999998889754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.29  E-value=0.21  Score=47.62  Aligned_cols=118  Identities=13%  Similarity=0.077  Sum_probs=73.2

Q ss_pred             EEEEECCEEEEEecCceeEEEEeC-CCCc--EEeccCCcc-----------CCcEEE--EcCe----EEEEeC-cEEEEe
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDH-MGLG--WTVEDYGWL-----------QGPMAI--VHDS----VYLMSH-GLIIKQ  233 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~-~~~~--W~~~~~~~~-----------~~~~~~--~~~~----ly~~g~-~~~~~y  233 (317)
                      +-++.+++||+.+.....++++|. .+++  |+.-.....           ....++  .+++    +|+... +.++++
T Consensus        57 tP~v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~Al  136 (599)
T 1w6s_A           57 APLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAAL  136 (599)
T ss_dssp             CCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEE
T ss_pred             ccEEECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEE
Confidence            456779999998653457999999 7775  987543321           123344  5777    988864 789999


Q ss_pred             cCCc----eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeec
Q 021080          234 HRDV----RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV  299 (317)
Q Consensus       234 d~~~----W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~  299 (317)
                      |.++    |+.-..-+........+-+..+++||+-.+..+.       .....+..||.++++..|+.-
T Consensus       137 Da~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~-------g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          137 NAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL-------GVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             ETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGG-------TCCCEEEEEETTTCCEEEEEE
T ss_pred             ECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEeccccc-------CCCCeEEEEECCCCcEEEEEc
Confidence            9765    9864322110001112234568888764432211       123478999999987789754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=95.21  E-value=1.5  Score=38.68  Aligned_cols=107  Identities=8%  Similarity=-0.063  Sum_probs=56.6

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEE-eccCCccCCcEEEE---cCeEEEEeC----cEEEEecCCceEEEeccccccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQGPMAIV---HDSVYLMSH----GLIIKQHRDVRKVVASASEFRRRI  251 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~---~~~ly~~g~----~~~~~yd~~~W~~v~~~~~~~~r~  251 (317)
                      ++.+++.|+....+..||..+..-. .+............   +..+++.++    +.+..||..+.+.+..+..  ...
T Consensus       228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~--~~~  305 (401)
T 4aez_A          228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA--GSQ  305 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC--SSC
T ss_pred             CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC--CCc
Confidence            6777777776678999999876422 12111111222222   345666653    6888999876444433331  111


Q ss_pred             cEEEEEE-CCe-EEEEeCcccCCCCceecccCcceeEeecCCCCCceeeccc
Q 021080          252 GFAMIGM-GDD-IYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSP  301 (317)
Q Consensus       252 ~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~  301 (317)
                      -..+... +++ +++.+|..+.           .+.+||..+.  +...+..
T Consensus       306 v~~~~~s~~~~~l~~~~g~~dg-----------~i~v~~~~~~--~~~~~~~  344 (401)
T 4aez_A          306 VTSLIWSPHSKEIMSTHGFPDN-----------NLSIWSYSSS--GLTKQVD  344 (401)
T ss_dssp             EEEEEECSSSSEEEEEECTTTC-----------EEEEEEEETT--EEEEEEE
T ss_pred             EEEEEECCCCCeEEEEeecCCC-----------cEEEEecCCc--cceeEEE
Confidence            1122222 344 4444453322           6788888876  5555433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.19  E-value=0.31  Score=46.23  Aligned_cols=116  Identities=14%  Similarity=0.047  Sum_probs=70.6

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCcc---------CCcEEEEcCeEEEEe-CcEEEEecCCc----e
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWL---------QGPMAIVHDSVYLMS-HGLIIKQHRDV----R  238 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~---------~~~~~~~~~~ly~~g-~~~~~~yd~~~----W  238 (317)
                      +.++.+++||+..... .+.++|..+++  |+.-.....         ....++.++++|+.. .+.++++|.++    |
T Consensus        63 ~P~v~~g~vyv~~~~~-~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W  141 (582)
T 1flg_A           63 QAIVSDGVIYVTASYS-RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVW  141 (582)
T ss_dssp             CCEEETTEEEEEETTT-EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEE
T ss_pred             ccEEECCEEEEEcCCC-CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEe
Confidence            4467899999987633 39999998775  986543321         133456789999876 47899999865    9


Q ss_pred             EEEeccccccccccEEEEEECC------eEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080          239 KVVASASEFRRRIGFAMIGMGD------DIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       239 ~~v~~~~~~~~r~~~~~~~~~~------~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~  298 (317)
                      +.-...+........+-+..++      .||+ |......      .....+..||.++++..|+.
T Consensus       142 ~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~------~~~g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          142 KKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEF------GVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             EEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGG------CCBCEEEEECTTTCCEEEEE
T ss_pred             eecCCCCCcCcccccCCEEeCCCcCCcEEEEE-ecccccc------CCCCEEEEEECCCCCEEeec
Confidence            8643322100001112233445      5554 3321110      12347899999998778964

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=95.18  E-value=1.6  Score=39.10  Aligned_cols=92  Identities=11%  Similarity=0.013  Sum_probs=49.4

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCcc--CCcEEEEcCeEEEEe
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHDSVYLMS  226 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~~ly~~g  226 (317)
                      .+.+||..+.+-..  .+... ......+..++...+.|+....+..||+.+..-........  .......++.+.+.+
T Consensus       333 ~i~vwd~~~~~~~~--~~~~h-~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  409 (464)
T 3v7d_B          333 TIRIWDLENGELMY--TLQGH-TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG  409 (464)
T ss_dssp             CEEEEETTTTEEEE--EECCC-SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEE
T ss_pred             cEEEEECCCCcEEE--EEeCC-CCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEe
Confidence            45566666554221  11111 22334555667777777767789999998765221111111  112223355555554


Q ss_pred             -CcEEEEecCCceEEEec
Q 021080          227 -HGLIIKQHRDVRKVVAS  243 (317)
Q Consensus       227 -~~~~~~yd~~~W~~v~~  243 (317)
                       .+.+..||.++-+.+..
T Consensus       410 ~dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          410 SENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             ETTEEEEEETTTCCEEES
T ss_pred             cCCeEEEEECCCCcEEeh
Confidence             47899999887555543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=95.14  E-value=0.32  Score=41.58  Aligned_cols=132  Identities=11%  Similarity=0.067  Sum_probs=66.9

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEE-ECC-EEEEEecCcee-EEEEeCCCCc-E-----EeccCCccCCcEEEE-
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVV-IGG-KVHVLHKGLST-VQVLDHMGLG-W-----TVEDYGWLQGPMAIV-  218 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~-~~g-~lyv~gG~~~~-v~~yd~~~~~-W-----~~~~~~~~~~~~~~~-  218 (317)
                      .+.+||..+++-...  ++.. ...+..+. -+| .+|+.+..... +..|+...+. .     ..++....+..++.. 
T Consensus       109 ~i~v~d~~~~~~~~~--~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp  185 (331)
T 3u4y_A          109 NMQSYSFLKNKFIST--IPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP  185 (331)
T ss_dssp             EEEEEETTTTEEEEE--EECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT
T ss_pred             cEEEEECCCCCeEEE--EECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC
Confidence            788899888765443  2222 22222333 245 48887664445 7777765432 1     111111111122221 


Q ss_pred             cC-eEEEEeC--cEEEEecCCceEE---EeccccccccccEEEEEE-CCe-EEEEeCcccCCCCceecccCcceeEeecC
Q 021080          219 HD-SVYLMSH--GLIIKQHRDVRKV---VASASEFRRRIGFAMIGM-GDD-IYVIGGVIGPDRWNWDIKPMSDVDVLTVG  290 (317)
Q Consensus       219 ~~-~ly~~g~--~~~~~yd~~~W~~---v~~~~~~~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~v~~yd~~  290 (317)
                      ++ .+|+.+.  +.+..||.+..+.   +..++.  ......++.. +++ ||+....            .+.+.+||++
T Consensus       186 dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~------------~~~i~~~d~~  251 (331)
T 3u4y_A          186 DGNFAFVANLIGNSIGILETQNPENITLLNAVGT--NNLPGTIVVSRDGSTVYVLTES------------TVDVFNFNQL  251 (331)
T ss_dssp             TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--SSCCCCEEECTTSSEEEEECSS------------EEEEEEEETT
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcccceeeeccC--CCCCceEEECCCCCEEEEEEcC------------CCEEEEEECC
Confidence            44 4787764  7899999876333   544442  1111222222 444 6665441            1257889998


Q ss_pred             CCCCceeec
Q 021080          291 AERPTWRQV  299 (317)
Q Consensus       291 ~~~~~W~~~  299 (317)
                      ++  +.+.+
T Consensus       252 ~~--~~~~~  258 (331)
T 3u4y_A          252 SG--TLSFV  258 (331)
T ss_dssp             TT--EEEEE
T ss_pred             CC--ceeee
Confidence            87  65444

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=95.08  E-value=0.84  Score=38.78  Aligned_cols=110  Identities=10%  Similarity=-0.051  Sum_probs=57.5

Q ss_pred             CC-EEEEEecCceeEEEEeCC--CCcEEec---cCCccC------C-cEEEE-cC-eEEEEeC--cEEEEecCC----ce
Q 021080          180 GG-KVHVLHKGLSTVQVLDHM--GLGWTVE---DYGWLQ------G-PMAIV-HD-SVYLMSH--GLIIKQHRD----VR  238 (317)
Q Consensus       180 ~g-~lyv~gG~~~~v~~yd~~--~~~W~~~---~~~~~~------~-~~~~~-~~-~ly~~g~--~~~~~yd~~----~W  238 (317)
                      ++ .+|+.+.....+..||..  +..+...   ...+..      . .++.. ++ .+|+...  +.+..|+.+    ++
T Consensus       188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~  267 (343)
T 1ri6_A          188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL  267 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence            44 477777556678888884  3444322   211111      0 12222 23 5776653  678888765    37


Q ss_pred             EEEeccccccccccEEEEEE-CC-eEEEEeCcccCCCCceecccCcceeEe--ecCCCCCceeecccCCCC
Q 021080          239 KVVASASEFRRRIGFAMIGM-GD-DIYVIGGVIGPDRWNWDIKPMSDVDVL--TVGAERPTWRQVSPMTRC  305 (317)
Q Consensus       239 ~~v~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~v~~y--d~~~~~~~W~~~~~~p~~  305 (317)
                      +.+...+....  ...++.. ++ .||+.++.+            +.+.+|  |++++  +++.+..++..
T Consensus       268 ~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~------------~~v~v~~~d~~~g--~~~~~~~~~~g  322 (343)
T 1ri6_A          268 SKEGFQPTETQ--PRGFNVDHSGKYLIAAGQKS------------HHISVYEIVGEQG--LLHEKGRYAVG  322 (343)
T ss_dssp             EEEEEEECSSS--CCCEEECTTSSEEEEECTTT------------CEEEEEEEETTTT--EEEEEEEEECS
T ss_pred             EEeeeecCCCc--cceEEECCCCCEEEEecCCC------------CeEEEEEEcCCCc--eeeEccccccC
Confidence            76665552111  1122222 34 466554321            144455  77777  88888776654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=95.02  E-value=1.4  Score=37.21  Aligned_cols=101  Identities=11%  Similarity=-0.025  Sum_probs=52.3

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEec-c-CCccCCcEEEE--cCeEEEEeC--cEEEEecCCceEEEecccccc-c-cc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVE-D-YGWLQGPMAIV--HDSVYLMSH--GLIIKQHRDVRKVVASASEFR-R-RI  251 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~-~-~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~-~-r~  251 (317)
                      ++++++.|+....+..||..+.+-... . ...........  +++.++.++  +.+..||..+-+.+..+.... . ..
T Consensus       160 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  239 (312)
T 4ery_A          160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC  239 (312)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSC
T ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEE
Confidence            567777777667899999987753321 1 11011111122  344444443  788888887643333222101 1 11


Q ss_pred             cEEEE-EECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          252 GFAMI-GMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       252 ~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ..... ..++.+++.|+.+            ..|.+||++++
T Consensus       240 ~~~~~~~~~~~~l~sg~~d------------g~i~vwd~~~~  269 (312)
T 4ery_A          240 IFANFSVTGGKWIVSGSED------------NLVYIWNLQTK  269 (312)
T ss_dssp             CCEEEECSSSCEEEECCTT------------SCEEEEETTTC
T ss_pred             EEEEEEeCCCcEEEEECCC------------CEEEEEECCCc
Confidence            11122 2356666666633            25778888776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=94.81  E-value=0.0092  Score=56.48  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=28.9

Q ss_pred             CCcCCCCcHHHHHHHhccCC-CCchhhhhhcCHhHHHh
Q 021080            2 SELIEGLPDAVALRCLARVP-FFLHPKLELVSRSWRAA   38 (317)
Q Consensus         2 ~~~~~~Lp~d~~~~~l~r~p-~~~~~~~~~v~k~w~~l   38 (317)
                      .+.|+.||+|++.+||+++| .++..+++.|||+|+.+
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            36788999999999999999 88999999999999987

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=94.79  E-value=1.4  Score=37.21  Aligned_cols=99  Identities=8%  Similarity=-0.199  Sum_probs=51.0

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE--cCeEEEEeC--cEEEEecCCceEEEeccccccccccEEE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV--HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAM  255 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~  255 (317)
                      +++.++.++....+..||+.+.+-...-...........  ++++++++.  +.+..||....+......  ....-..+
T Consensus       194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~v~~~  271 (337)
T 1gxr_A          194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL--HESCVLSL  271 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC--CSSCEEEE
T ss_pred             CCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC--CccceeEE
Confidence            666777777667899999987753222111111111122  455555543  678888876632221111  11111122


Q ss_pred             EEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          256 IGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       256 ~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ... ++++++.++.+            ..+.+||.+++
T Consensus       272 ~~~~~~~~l~~~~~d------------g~i~~~~~~~~  297 (337)
T 1gxr_A          272 KFAYCGKWFVSTGKD------------NLLNAWRTPYG  297 (337)
T ss_dssp             EECTTSSEEEEEETT------------SEEEEEETTTC
T ss_pred             EECCCCCEEEEecCC------------CcEEEEECCCC
Confidence            222 46666666532            25778888776

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=94.51  E-value=1.1  Score=38.58  Aligned_cols=130  Identities=14%  Similarity=0.085  Sum_probs=65.0

Q ss_pred             CCceEEEeCCCCCEeecCCCCccccccCC-eeEEEe-CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCC
Q 021080           66 ENLWQLYDPLRDLWITLPVLPSKIRHLAH-FGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSC  143 (317)
Q Consensus        66 ~~~~~~yd~~~~~W~~~~~~p~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~  143 (317)
                      ...+..||..++++..+..+...   ... .++... ++..++.|+.+                                
T Consensus        29 d~~v~i~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~~~~~d--------------------------------   73 (372)
T 1k8k_C           29 NHEVHIYEKSGNKWVQVHELKEH---NGQVTGVDWAPDSNRIVTCGTD--------------------------------   73 (372)
T ss_dssp             SSEEEEEEEETTEEEEEEEEECC---SSCEEEEEEETTTTEEEEEETT--------------------------------
T ss_pred             CCEEEEEeCCCCcEEeeeeecCC---CCcccEEEEeCCCCEEEEEcCC--------------------------------
Confidence            46888999988876554443321   111 222222 45666666642                                


Q ss_pred             cCCCceeEEeeCCCCceeeCCCCCccCCCceEEEE--ECCEEEEEecCceeEEEEeCCCCc-EEeccCCcc----CCcEE
Q 021080          144 RKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV--IGGKVHVLHKGLSTVQVLDHMGLG-WTVEDYGWL----QGPMA  216 (317)
Q Consensus       144 ~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~--~~g~lyv~gG~~~~v~~yd~~~~~-W~~~~~~~~----~~~~~  216 (317)
                          ..+.+||..++++.....+... ......+.  -++++++.|+....+..||..+.. |........    .....
T Consensus        74 ----g~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~  148 (372)
T 1k8k_C           74 ----RNAYVWTLKGRTWKPTLVILRI-NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL  148 (372)
T ss_dssp             ----SCEEEEEEETTEEEEEEECCCC-SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred             ----CeEEEEECCCCeeeeeEEeecC-CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEE
Confidence                3456677777766544222211 11222222  256667777655667777776554 332221111    11111


Q ss_pred             EE--cCeEEEEeC--cEEEEecC
Q 021080          217 IV--HDSVYLMSH--GLIIKQHR  235 (317)
Q Consensus       217 ~~--~~~ly~~g~--~~~~~yd~  235 (317)
                      ..  ++.+++.++  +.+..||.
T Consensus       149 ~~~~~~~~l~~~~~dg~i~~~d~  171 (372)
T 1k8k_C          149 DWHPNSVLLAAGSCDFKCRIFSA  171 (372)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEC
T ss_pred             EEcCCCCEEEEEcCCCCEEEEEc
Confidence            22  455555543  67777774

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=94.48  E-value=0.6  Score=39.79  Aligned_cols=115  Identities=8%  Similarity=-0.072  Sum_probs=61.8

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEE-ECC-EEEEEecCceeEEEEeCCCCcE--EeccCCccCCc-EEEE-cC-
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVV-IGG-KVHVLHKGLSTVQVLDHMGLGW--TVEDYGWLQGP-MAIV-HD-  220 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~-~~g-~lyv~gG~~~~v~~yd~~~~~W--~~~~~~~~~~~-~~~~-~~-  220 (317)
                      ..+.+||+.+++....-..+..   ....++ -+| .+|+.+.....+..+|+.+++-  ..+.....+.. ++.. ++ 
T Consensus        20 ~~v~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~   96 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQITLGYD---FVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQ   96 (331)
T ss_dssp             TEEEEEETTTCCEEEEEECCCC---EEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSS
T ss_pred             CeEEEEeCcccceeeeEEccCC---cceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCC
Confidence            4677888888877554333322   222222 245 4888776567899999988874  22222212223 3332 33 


Q ss_pred             eEEEEeCc----EEEEecCCceEEEeccccccccccEEEEEE-CC-eEEEEeC
Q 021080          221 SVYLMSHG----LIIKQHRDVRKVVASASEFRRRIGFAMIGM-GD-DIYVIGG  267 (317)
Q Consensus       221 ~ly~~g~~----~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~-~~-~lyv~GG  267 (317)
                      .+|+..+.    .++.+|.++-+.+..++.  ......++.. ++ .||+.+.
T Consensus        97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A           97 FAVTVTGLNHPFNMQSYSFLKNKFISTIPI--PYDAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             EEEECCCSSSSCEEEEEETTTTEEEEEEEC--CTTEEEEEECTTSSCEEEEEE
T ss_pred             EEEEecCCCCcccEEEEECCCCCeEEEEEC--CCCccceEECCCCCEEEEEec
Confidence            56744443    899999877444443432  1111233332 34 4777654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=94.37  E-value=1.9  Score=35.78  Aligned_cols=97  Identities=6%  Similarity=-0.065  Sum_probs=55.4

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCcc---CCcEEEE-cCeEEEEe--CcEEEEecCCc-eEEEecccccccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL---QGPMAIV-HDSVYLMS--HGLIIKQHRDV-RKVVASASEFRRRIG  252 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~-~~~ly~~g--~~~~~~yd~~~-W~~v~~~~~~~~r~~  252 (317)
                      +|+||+.......+..||+ +++.........   ...++.- +|.+|+..  .+.+..||++. ..... .+. ....-
T Consensus       193 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~-~~~-~~~~~  269 (299)
T 2z2n_A          193 DDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYP-IQI-KSAEP  269 (299)
T ss_dssp             TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEE-CSS-SSCCE
T ss_pred             CCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEe-CCC-CCCcc
Confidence            5789888655568999999 777765432111   1122222 57899986  37899999854 33332 111 01112


Q ss_pred             EEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          253 FAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       253 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .+++.-++.||+...             .+.+.+||++++
T Consensus       270 ~~i~~~~g~l~v~~~-------------~~~l~~~~~~~~  296 (299)
T 2z2n_A          270 HGICFDGETIWFAME-------------CDKIGKLTLIKD  296 (299)
T ss_dssp             EEEEECSSCEEEEET-------------TTEEEEEEEC--
T ss_pred             ceEEecCCCEEEEec-------------CCcEEEEEcCcc
Confidence            233335678888653             126778888765

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=94.36  E-value=2.2  Score=36.58  Aligned_cols=108  Identities=6%  Similarity=-0.122  Sum_probs=54.3

Q ss_pred             CCEEEEEecCceeEEEEeCCC------------------Cc-EEeccCCccCCcEEEE--cCeEEEEeC--cEEEEecCC
Q 021080          180 GGKVHVLHKGLSTVQVLDHMG------------------LG-WTVEDYGWLQGPMAIV--HDSVYLMSH--GLIIKQHRD  236 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~------------------~~-W~~~~~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~  236 (317)
                      ++++++.|+....+..||...                  .. -..+............  ++..++.++  +.+..||..
T Consensus       153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  232 (372)
T 1k8k_C          153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  232 (372)
T ss_dssp             TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            566777777667788898542                  11 1111110001111222  444444443  678888887


Q ss_pred             ceEEEeccccccccccEEEE-EECCeEEEEeCcccCCCCceecccCcceeEeecCC--CCCceeecccCC
Q 021080          237 VRKVVASASEFRRRIGFAMI-GMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA--ERPTWRQVSPMT  303 (317)
Q Consensus       237 ~W~~v~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~--~~~~W~~~~~~p  303 (317)
                      ..+.+..+....... ..+. .-++++++.| . +.           .+.+||+.+  +  +|..+..+.
T Consensus       233 ~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~-~-d~-----------~i~i~~~~~~~~--~~~~~~~~~  286 (372)
T 1k8k_C          233 KKMAVATLASETLPL-LAVTFITESSLVAAG-H-DC-----------FPVLFTYDSAAG--KLSFGGRLD  286 (372)
T ss_dssp             GTTEEEEEECSSCCE-EEEEEEETTEEEEEE-T-TS-----------SCEEEEEETTTT--EEEECCCCC
T ss_pred             CCceeEEEccCCCCe-EEEEEecCCCEEEEE-e-CC-----------eEEEEEccCcCc--eEEEeeccC
Confidence            644443333111111 2222 2356665555 2 11           567888888  7  887775543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=94.33  E-value=2.2  Score=36.47  Aligned_cols=100  Identities=12%  Similarity=0.027  Sum_probs=54.8

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEE-eccCCccCCcEEEE--cCeEEEEeC--cEEEEecCCceEEEeccccccccccEE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQGPMAIV--HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFA  254 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~  254 (317)
                      ++++.+.|+....+..||..+++-. .+............  ++++++.++  +.+..||......+..+.. ....-..
T Consensus       175 dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~  253 (321)
T 3ow8_A          175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG-HASWVLN  253 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC-CSSCEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC-CCCceEE
Confidence            6777777776678999999887532 22211111222222  556666655  6788888876444433331 1111112


Q ss_pred             EEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          255 MIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       255 ~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ++.. +++.++.|+.+            ..|.+||+.+.
T Consensus       254 ~~~sp~~~~l~s~s~D------------~~v~iwd~~~~  280 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSD------------KSVKVWDVGTR  280 (321)
T ss_dssp             EEECTTSSEEEEEETT------------SCEEEEETTTT
T ss_pred             EEECCCCCEEEEEeCC------------CcEEEEeCCCC
Confidence            2222 56666766643            25778888765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=94.20  E-value=3.9  Score=39.93  Aligned_cols=132  Identities=8%  Similarity=0.110  Sum_probs=73.3

Q ss_pred             eeEEeeCCCCceeeCCCC--CccC-CCceEEEEE--CCEEEEEecCceeEEEEeCCCCcEEeccC-----CccCCcE-EE
Q 021080          149 QAEMYDPEKDVWVPIPDL--HRTH-NSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLGWTVEDY-----GWLQGPM-AI  217 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~--p~~~-r~~~~~~~~--~g~lyv~gG~~~~v~~yd~~~~~W~~~~~-----~~~~~~~-~~  217 (317)
                      .+.+||+.+++|+.....  +... ......+..  +|.|++...  .-+.+||+.++.+ ....     ..+...+ +.
T Consensus       472 Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i  548 (795)
T 4a2l_A          472 ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCI  548 (795)
T ss_dssp             CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEE
T ss_pred             ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEE
Confidence            366788888888876432  1110 111122222  567777543  5689999988888 4321     1111111 11


Q ss_pred             ---EcCeEEEEeCcEEEEecCCc--eEEEeccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCC
Q 021080          218 ---VHDSVYLMSHGLIIKQHRDV--RKVVASASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA  291 (317)
Q Consensus       218 ---~~~~ly~~g~~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~  291 (317)
                         -+|.|++...+.++.||+++  ++............-.+++.. +|.|++.+.              +.+.+||+++
T Consensus       549 ~~d~~g~lWigT~~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--------------~Gl~~~~~~~  614 (795)
T 4a2l_A          549 YEASNGIIWVGTREGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--------------RGISCFNPET  614 (795)
T ss_dssp             EECTTSCEEEEESSCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEET--------------TEEEEEETTT
T ss_pred             EECCCCCEEEEeCCCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEcC--------------CceEEEcCCC
Confidence               25788887767899999876  665543221111122333333 577887652              2466788877


Q ss_pred             CCCceeec
Q 021080          292 ERPTWRQV  299 (317)
Q Consensus       292 ~~~~W~~~  299 (317)
                      +  +++..
T Consensus       615 ~--~~~~~  620 (795)
T 4a2l_A          615 E--KFRNF  620 (795)
T ss_dssp             T--EEEEE
T ss_pred             C--cEEEc
Confidence            7  66654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=94.06  E-value=2.3  Score=36.14  Aligned_cols=51  Identities=16%  Similarity=0.113  Sum_probs=28.4

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe-C-CEEEEEcC
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-A-GKLFVLGG  109 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~-~-~~iyv~GG  109 (317)
                      +..+|+.++. ...++.+|..+++....-..+..   .....++.. + +.+|+.+.
T Consensus        10 ~~~~~v~~~~-~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~~~v~~~   62 (349)
T 1jmx_B           10 GHEYMIVTNY-PNNLHVVDVASDTVYKSCVMPDK---FGPGTAMMAPDNRTAYVLNN   62 (349)
T ss_dssp             TCEEEEEEET-TTEEEEEETTTTEEEEEEECSSC---CSSCEEEECTTSSEEEEEET
T ss_pred             CCEEEEEeCC-CCeEEEEECCCCcEEEEEecCCC---CCCceeEECCCCCEEEEEeC
Confidence            5567766653 46899999998876543233320   011233332 3 35777764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.04  E-value=3.3  Score=40.36  Aligned_cols=133  Identities=7%  Similarity=-0.055  Sum_probs=73.4

Q ss_pred             eeEEeeCCCCceeeCCCCC---ccCCCceEEEE--ECCEEEEEecCceeEEEEeCCCCcEEeccCCc--cCCcE-EE---
Q 021080          149 QAEMYDPEKDVWVPIPDLH---RTHNSACTGVV--IGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW--LQGPM-AI---  217 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p---~~~r~~~~~~~--~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~--~~~~~-~~---  217 (317)
                      -+.+||+.+++|+.....+   .. ......+.  -+|.|++... ..-+.+||+.++++.......  +...+ +.   
T Consensus       470 Gl~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~d~~g~lWigt~-~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d  547 (781)
T 3v9f_A          470 GVFVIDLASKKVIHHYDTSNSQLL-ENFVRSIAQDSEGRFWIGTF-GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRS  547 (781)
T ss_dssp             EEEEEESSSSSCCEEECTTTSSCS-CSCEEEEEECTTCCEEEEES-SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEEC
T ss_pred             ceEEEeCCCCeEEecccCcccccc-cceeEEEEEcCCCCEEEEEc-CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEEC
Confidence            4667787777776553222   11 11112222  2567776532 245889999999888765321  11111 11   


Q ss_pred             EcCeEEEEeCcEE-EEecCCc--eEEEeccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCCC
Q 021080          218 VHDSVYLMSHGLI-IKQHRDV--RKVVASASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAER  293 (317)
Q Consensus       218 ~~~~ly~~g~~~~-~~yd~~~--W~~v~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  293 (317)
                      -+|.|++...+.+ +.||+++  ++.......+....-.+++.. +|.|++.+.              +.+.+||++++ 
T Consensus       548 ~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~--------------~Gl~~~~~~~~-  612 (781)
T 3v9f_A          548 SKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTN--------------TGISCYITSKK-  612 (781)
T ss_dssp             TTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECS--------------SCEEEEETTTT-
T ss_pred             CCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcC--------------CceEEEECCCC-
Confidence            2578888877777 9999875  666543221111122344443 577887542              24667788777 


Q ss_pred             Cceeec
Q 021080          294 PTWRQV  299 (317)
Q Consensus       294 ~~W~~~  299 (317)
                       +++..
T Consensus       613 -~~~~~  617 (781)
T 3v9f_A          613 -CFYTY  617 (781)
T ss_dssp             -EEEEE
T ss_pred             -ceEEe
Confidence             66554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=94.00  E-value=1  Score=43.86  Aligned_cols=96  Identities=10%  Similarity=0.139  Sum_probs=56.0

Q ss_pred             CCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--C--CEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCC
Q 021080           66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--A--GKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFT  141 (317)
Q Consensus        66 ~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~  141 (317)
                      ...+..||...+.+..+..+...   ......+..  .  +..++.|+.+                              
T Consensus        30 dg~I~vwd~~~~~~~~~~~l~~h---~~~V~~l~~s~~~~~~~l~s~s~D------------------------------   76 (753)
T 3jro_A           30 DKTIKIFEVEGETHKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYD------------------------------   76 (753)
T ss_dssp             TTEEEEEEEETTEEEEEEEECCC---SSCEEEEEECCTTSCSEEEEEETT------------------------------
T ss_pred             CCcEEEEecCCCCCccceeccCC---cCceEEEEecCCCCCCEEEEEeCC------------------------------
Confidence            35788888877677655444321   222323333  2  5666777653                              


Q ss_pred             CCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEE--C--CEEEEEecCceeEEEEeCCCC
Q 021080          142 SCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--G--GKVHVLHKGLSTVQVLDHMGL  201 (317)
Q Consensus       142 ~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~--~--g~lyv~gG~~~~v~~yd~~~~  201 (317)
                            ..+.+||..+++|..+..+... ......+.+  +  +.+++.|+....+..||..+.
T Consensus        77 ------g~I~vwd~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           77 ------GKVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             ------SCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred             ------CeEEEEECCCCcccccccccCC-CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence                  3466777777777655443322 222233333  3  667777776778999998776

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=93.91  E-value=0.089  Score=46.74  Aligned_cols=125  Identities=5%  Similarity=-0.024  Sum_probs=51.4

Q ss_pred             eeEEeeCCCC--ceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCC--cEEeccCCcc---CCcEEEEcCe
Q 021080          149 QAEMYDPEKD--VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGL--GWTVEDYGWL---QGPMAIVHDS  221 (317)
Q Consensus       149 ~~~~yd~~t~--~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~--~W~~~~~~~~---~~~~~~~~~~  221 (317)
                      .+.++|..++  .|+.-.   .+  .....++.++++|+.+.....+.++|..++  .|........   ..++...++.
T Consensus        20 ~v~a~d~~tG~~~W~~~~---~~--~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~   94 (369)
T 2hz6_A           20 SLHAVSKRTGSIKWTLKE---DP--VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGI   94 (369)
T ss_dssp             EEEEEETTTCCEEEEEEC---CC--SCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----
T ss_pred             EEEEEECCCCCEEEEecC---CC--ceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCE
Confidence            4555665554  365433   11  112234556778888665667999998655  4653221111   1222224666


Q ss_pred             EEEEeC-cEEEEecCCc----eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCce
Q 021080          222 VYLMSH-GLIIKQHRDV----RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTW  296 (317)
Q Consensus       222 ly~~g~-~~~~~yd~~~----W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W  296 (317)
                      +|+... +.++.+|.++    |+.-....   .    ..+..++.||+. +.+            ..+..||+++++..|
T Consensus        95 v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~----~~~p~~~~v~~~-~~d------------g~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           95 LYMGKKQDIWYVIDLLTGEKQQTLSSAFA---D----SLSPSTSLLYLG-RTE------------YTITMYDTKTRELRW  154 (369)
T ss_dssp             CCCCEEEEEEEEECCC-----------------------------EEEE-EEE------------EEEECCCSSSSSCCC
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEecCCCc---c----cccccCCEEEEE-ecC------------CEEEEEECCCCCEEE
Confidence            765443 6799999775    76532211   1    112244555543 211            257788888776668


Q ss_pred             ee
Q 021080          297 RQ  298 (317)
Q Consensus       297 ~~  298 (317)
                      +.
T Consensus       155 ~~  156 (369)
T 2hz6_A          155 NA  156 (369)
T ss_dssp             EE
T ss_pred             eE
Confidence            74

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=93.83  E-value=1.3  Score=38.09  Aligned_cols=88  Identities=11%  Similarity=0.059  Sum_probs=48.4

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEEE--C--CEEEEEecCceeEEEEeCCCCcEEeccCCcc---CCcEEEE--c
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--G--GKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL---QGPMAIV--H  219 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~--~--g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~--~  219 (317)
                      .+.+||...+++..+..+... ......+.+  +  +.+.+.|+....+..||..+++|..+.....   ....+..  +
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  112 (379)
T 3jrp_A           34 TIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH  112 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG
T ss_pred             cEEEEecCCCcceeeeEecCC-CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCC
Confidence            455666665565554433322 222233333  2  6677777766779999999988765543332   1111222  2


Q ss_pred             --CeEEEEeC--cEEEEecCCc
Q 021080          220 --DSVYLMSH--GLIIKQHRDV  237 (317)
Q Consensus       220 --~~ly~~g~--~~~~~yd~~~  237 (317)
                        +.+++.++  +.+..||...
T Consensus       113 ~~~~~l~~~~~d~~i~v~d~~~  134 (379)
T 3jrp_A          113 EYGPLLLVASSDGKVSVVEFKE  134 (379)
T ss_dssp             GGCSEEEEEETTSEEEEEECCT
T ss_pred             CCCCEEEEecCCCcEEEEecCC
Confidence              44555543  6788887654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=93.73  E-value=2.7  Score=35.30  Aligned_cols=130  Identities=12%  Similarity=0.025  Sum_probs=64.0

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEE--ECCEEEEEecCceeEEEEeCCCCcEEec-cCCccCCcEEEE--cCeE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVV--IGGKVHVLHKGLSTVQVLDHMGLGWTVE-DYGWLQGPMAIV--HDSV  222 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~--~~g~lyv~gG~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~--~~~l  222 (317)
                      ..+.+||..+.+......+... ......+.  -+++.++.|+....+..||..+.+-... ............  ++..
T Consensus       119 ~~i~~~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  197 (337)
T 1gxr_A          119 STLSIWDLAAPTPRIKAELTSS-APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK  197 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECS-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             CcEEEEECCCCCcceeeecccC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCE
Confidence            3566677777664333222222 11222222  2566777777667799999988764322 111111112222  4444


Q ss_pred             EEEeC--cEEEEecCCceEEEeccccccccccEEEEE-ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          223 YLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       223 y~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ++.++  +.+..||.++.+.+.....  ...-..+.. -+++.+++|+.+            ..+.+||..+.
T Consensus       198 l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~------------~~i~~~~~~~~  256 (337)
T 1gxr_A          198 LWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTGEWLAVGMES------------SNVEVLHVNKP  256 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTSSEEEEEETT------------SCEEEEETTSS
T ss_pred             EEEEecCCcEEEEECCCCceEeeecC--CCceEEEEECCCCCEEEEEcCC------------CcEEEEECCCC
Confidence            44443  7889999877444333321  111122222 255666666532            25677777765

>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}

Probab=93.61  E-value=1.4  Score=36.15  Aligned_cols=55  Identities=9%  Similarity=-0.020  Sum_probs=38.0

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEe----ccCC---------ccCCcEEEE---cCeEEEEeCcEEEEecCC
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTV----EDYG---------WLQGPMAIV---HDSVYLMSHGLIIKQHRD  236 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~----~~~~---------~~~~~~~~~---~~~ly~~g~~~~~~yd~~  236 (317)
                      ++++|++-|  +..++||..+++...    +...         +....+|..   ++++|++.|+..+.||..
T Consensus       127 ~gk~yfFkG--~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~~ywr~d~~  197 (225)
T 3oyo_A          127 GKEVYLFKG--NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQNYVRIDFT  197 (225)
T ss_dssp             TTEEEEEET--TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETTEEEEEECC
T ss_pred             CCcEEEEeC--CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECCEEEEEeCC
Confidence            789999977  568889877665432    1111         112344444   689999999999999987

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=93.61  E-value=2.3  Score=34.02  Aligned_cols=95  Identities=11%  Similarity=-0.008  Sum_probs=54.5

Q ss_pred             CCEEEEEecCceeEEEEeCCCCc-------EEeccCCccCCcEEEE--cCeEEEEeCcEEEEecCCceEEEeccc-----
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLG-------WTVEDYGWLQGPMAIV--HDSVYLMSHGLIIKQHRDVRKVVASAS-----  245 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~-------W~~~~~~~~~~~~~~~--~~~ly~~g~~~~~~yd~~~W~~v~~~~-----  245 (317)
                      ++++|++-|  +..++|+..+..       | -++.......+|..  ++++|++-|+..+.||..+-+....-|     
T Consensus        64 ~~~~yfFkG--~~yw~~~~~~~~~Pk~i~~~-G~p~~~~~iDAA~~~~~g~~yfFkg~~ywr~d~~~~~~~~gyPr~i~~  140 (195)
T 1itv_A           64 SKKLFFFSG--RQVWVYTGASVLGPRRLDKL-GLGADVAQVTGALRSGRGKMLLFSGRRLWRFDVKAQMVDPRSASEVDR  140 (195)
T ss_dssp             TCCEEEEET--TEEEEEETTEEEEEEEGGGG-TCCTTCCCCCEEEECSTTEEEEEETTEEEEEETTTTEECGGGCEEHHH
T ss_pred             CCeEEEEeC--CEEEEEcCCccCCCEEeeec-ccCCCccceeEEEEcCCCeEEEEeCCEEEEEeCCcccccCCCccChhh
Confidence            688999976  456677643211       2 11111112344443  679999999999999975422211111     


Q ss_pred             ---cccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          246 ---EFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       246 ---~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                         ....... ++...+|++|++-|              +..+.||..+.
T Consensus       141 ~w~Gvp~~id-aa~~~~g~~Yffkg--------------~~y~~~~~~~~  175 (195)
T 1itv_A          141 MFPGVPLDTH-DVFQFREKAYFCQD--------------RFYWRVSSRSE  175 (195)
T ss_dssp             HSTTSCSSCS-EEEEETTEEEEEET--------------TEEEEEECCTT
T ss_pred             cCCCCCCCCC-EEEEeCCeEEEEeC--------------CEEEEEECCcc
Confidence               1011222 34445799999876              25677888766

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.45  E-value=5.3  Score=38.61  Aligned_cols=101  Identities=11%  Similarity=-0.043  Sum_probs=53.9

Q ss_pred             CCEEEEEecCceeEEEEeCCCCc--EEeccCCccCCcEEEE----cCeEEEEeC--cEEEEecCCceEEEeccccccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQGPMAIV----HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRI  251 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~----~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~  251 (317)
                      ++.+++.|+....+..||..+..  ................    ++.+++.++  +.+..||....+.+..+.......
T Consensus       152 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v  231 (814)
T 3mkq_A          152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV  231 (814)
T ss_dssp             EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence            46677777766789999986654  2222111112222222    566666654  688889887654444333111111


Q ss_pred             cEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          252 GFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       252 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ......-++.+++.|+.+            ..|.+||+.+.
T Consensus       232 ~~~~~~~~~~~l~~~~~d------------g~v~vwd~~~~  260 (814)
T 3mkq_A          232 SFAVFHPTLPIIISGSED------------GTLKIWNSSTY  260 (814)
T ss_dssp             EEEEECSSSSEEEEEETT------------SCEEEEETTTC
T ss_pred             EEEEEcCCCCEEEEEeCC------------CeEEEEECCCC
Confidence            111122255666666632            25677888765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=93.44  E-value=3  Score=34.93  Aligned_cols=141  Identities=8%  Similarity=-0.021  Sum_probs=72.3

Q ss_pred             CceEEEE-------EeCCCCceEEEeCCCCCEeecCCCCccc-cccCCeeEEEe-C-CEEEEEcCcCCCCCCCCCCCCCc
Q 021080           55 ENLLCVC-------AFDPENLWQLYDPLRDLWITLPVLPSKI-RHLAHFGVVST-A-GKLFVLGGGSDAVDPLTGDQDGS  124 (317)
Q Consensus        55 ~~~l~v~-------gg~~~~~~~~yd~~~~~W~~~~~~p~~~-~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~  124 (317)
                      ++.+|+.       +. ....+..||+.++++..+.. +... ....-.+++.. + +++|+....              
T Consensus        28 ~g~l~~~~~~~~~~~~-~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~~--------------   91 (314)
T 1pjx_A           28 NGDFYIVAPEVEVNGK-PAGEILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADMR--------------   91 (314)
T ss_dssp             TSCEEEEETTCEETTE-ECCEEEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEETT--------------
T ss_pred             CCCEEEEEeccccCCC-CCCEEEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEECC--------------
Confidence            4567766       21 13578999999988876532 1100 00111333332 4 678887642              


Q ss_pred             ccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeC-CCCCc--cC-CCceEEEEECCEEEEEecCc----------
Q 021080          125 FATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI-PDLHR--TH-NSACTGVVIGGKVHVLHKGL----------  190 (317)
Q Consensus       125 ~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~-~~~p~--~~-r~~~~~~~~~g~lyv~gG~~----------  190 (317)
                                             ..+.+||+. ++...+ .....  +. ....-++--+|++|+.....          
T Consensus        92 -----------------------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~  147 (314)
T 1pjx_A           92 -----------------------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             -----------------------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred             -----------------------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence                                   235556666 555444 22111  10 11112222367888876422          


Q ss_pred             -----eeEEEEeCCCCcEEeccCCcc-CCcEEEE-----cC-eEEEEeC--cEEEEecCC
Q 021080          191 -----STVQVLDHMGLGWTVEDYGWL-QGPMAIV-----HD-SVYLMSH--GLIIKQHRD  236 (317)
Q Consensus       191 -----~~v~~yd~~~~~W~~~~~~~~-~~~~~~~-----~~-~ly~~g~--~~~~~yd~~  236 (317)
                           ..++.||+. ++...+..... +...+..     ++ .+|+.+.  +.++.|+.+
T Consensus       148 ~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~  206 (314)
T 1pjx_A          148 MQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             TSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred             ccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence                 579999987 55544321111 1233333     23 5788763  688888854

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=93.41  E-value=1.1  Score=38.60  Aligned_cols=55  Identities=11%  Similarity=0.091  Sum_probs=30.5

Q ss_pred             CCEEEEEecCceeEEEEeCC-CCcEEeccCCc--c---CCcEEE-EcCe-EEEEeC--cEEEEec
Q 021080          180 GGKVHVLHKGLSTVQVLDHM-GLGWTVEDYGW--L---QGPMAI-VHDS-VYLMSH--GLIIKQH  234 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~-~~~W~~~~~~~--~---~~~~~~-~~~~-ly~~g~--~~~~~yd  234 (317)
                      +|++|+.+.....+..||+. +++...+....  .   +..++. -+++ +|+.+.  +.+..|+
T Consensus       151 dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~  215 (347)
T 3hfq_A          151 DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLK  215 (347)
T ss_dssp             TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            67788776656679999987 55554332111  0   111222 2454 787754  5555554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=93.33  E-value=3.2  Score=34.86  Aligned_cols=89  Identities=15%  Similarity=0.054  Sum_probs=52.6

Q ss_pred             EEEECCEEEEEecCceeEEEEeCCCC-cEEeccCCccCCcEEE-EcCeEEEEeC--cEEEEecCCc----eEEEeccccc
Q 021080          176 GVVIGGKVHVLHKGLSTVQVLDHMGL-GWTVEDYGWLQGPMAI-VHDSVYLMSH--GLIIKQHRDV----RKVVASASEF  247 (317)
Q Consensus       176 ~~~~~g~lyv~gG~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~-~~~~ly~~g~--~~~~~yd~~~----W~~v~~~~~~  247 (317)
                      ....+|.+++.......+.+||+.-+ .|+.-....+ ..++. .+|.+++.+.  +.++.+|+++    |+.-..-.+ 
T Consensus       131 ~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~~-~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~-  208 (276)
T 3no2_A          131 NKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTP-FSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE-  208 (276)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTSCEEEEEECSSCC-CEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB-
T ss_pred             eECCCCCEEEEecCCCEEEEECCCCCEEEEEECCCCc-cceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC-
Confidence            34456777776655678999999733 3775543222 23333 3677777754  5899999884    887532211 


Q ss_pred             cccc--cEEEE-EECCeEEEEe
Q 021080          248 RRRI--GFAMI-GMGDDIYVIG  266 (317)
Q Consensus       248 ~~r~--~~~~~-~~~~~lyv~G  266 (317)
                      ..+.  -.++. .-+|.+|+..
T Consensus       209 ~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          209 GVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             SCCCSEEEEEEECTTSCEEEEE
T ss_pred             CccccccccceEcCCCCEEEEe
Confidence            1121  12233 3378898886

>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1

Probab=93.25  E-value=2.9  Score=34.12  Aligned_cols=87  Identities=14%  Similarity=0.085  Sum_probs=53.0

Q ss_pred             EEEECCEEEEEecCceeEEEEeCCCC-cE-----EeccC---CccC-----CcEEEE---cCeEEEEeCcEEEEecCCc-
Q 021080          176 GVVIGGKVHVLHKGLSTVQVLDHMGL-GW-----TVEDY---GWLQ-----GPMAIV---HDSVYLMSHGLIIKQHRDV-  237 (317)
Q Consensus       176 ~~~~~g~lyv~gG~~~~v~~yd~~~~-~W-----~~~~~---~~~~-----~~~~~~---~~~ly~~g~~~~~~yd~~~-  237 (317)
                      +...+|++|++-|  +..++|+..++ +-     ..+..   .+..     ..+|..   ++++|++.|+..+.||.++ 
T Consensus        68 A~~~~~~~yfFkG--~~yw~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~~ywr~d~~~~  145 (219)
T 1hxn_A           68 AFSWEDKLYLIQD--TKVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRRLWWLDLKSG  145 (219)
T ss_dssp             EEEETTEEEEEET--TEEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETTEEEEEEGGGG
T ss_pred             EEEECCcEEEecC--CEEEEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCCEEEEEeCCCC
Confidence            4445999999966  56888886532 10     01110   1112     344443   5799999999999999654 


Q ss_pred             ----eEEEeccccccccccEEEEE-----------ECCeEEEEeC
Q 021080          238 ----RKVVASASEFRRRIGFAMIG-----------MGDDIYVIGG  267 (317)
Q Consensus       238 ----W~~v~~~~~~~~r~~~~~~~-----------~~~~lyv~GG  267 (317)
                          |...+.+|   .....++..           .++.+|++-|
T Consensus       146 P~~i~~~~~g~p---~~vdAa~~~~~~~~~~~~~~~~~~~YFFkg  187 (219)
T 1hxn_A          146 AQATWTELPWPH---EKVDGALCMEKPLGPNSCSTSGPNLYLIHG  187 (219)
T ss_dssp             GGCCCEEECCSC---SCCSEEEEESSCSSSCCSCSSSCEEEEEET
T ss_pred             ceEhhhcCCCCC---CCcCEEEEccccccccceeccCCeEEEEEC
Confidence                76655544   233344442           3567999877

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=93.20  E-value=3.3  Score=34.74  Aligned_cols=62  Identities=11%  Similarity=-0.097  Sum_probs=34.4

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEE-eccCCccCCcEEEE--cCeEEEEeC--cEEEEecCCceEEE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQGPMAIV--HDSVYLMSH--GLIIKQHRDVRKVV  241 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~W~~v  241 (317)
                      ++.+++.|+....+..||+.+.+-. .+............  ++.+++.++  +.+..||..+.+.+
T Consensus       118 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  184 (312)
T 4ery_A          118 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL  184 (312)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Confidence            5566777776677999999876532 22211111111222  455555553  67888887764333

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=93.20  E-value=3.6  Score=35.12  Aligned_cols=88  Identities=9%  Similarity=-0.056  Sum_probs=46.6

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEec-cCCccCCcEEEE--cCeEEEEeC--cEEEEecCCceEEEeccccccccccEE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVE-DYGWLQGPMAIV--HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFA  254 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~  254 (317)
                      ++++.+.|+....+..||..+..-... .........+..  +++.++.++  +.+..+|..+.+.+..+.. ....-.+
T Consensus       217 d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-h~~~v~~  295 (321)
T 3ow8_A          217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD-HQDQVWG  295 (321)
T ss_dssp             TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC-CCCcEEE
Confidence            677778887667799999987654322 111001111122  455554443  6788888887655554432 1111122


Q ss_pred             EEEE-CCeEEEEeCc
Q 021080          255 MIGM-GDDIYVIGGV  268 (317)
Q Consensus       255 ~~~~-~~~lyv~GG~  268 (317)
                      +... +++.++.||.
T Consensus       296 v~~s~~g~~l~s~~~  310 (321)
T 3ow8_A          296 VKYNGNGSKIVSVGD  310 (321)
T ss_dssp             EEECTTSSEEEEEET
T ss_pred             EEECCCCCEEEEEeC
Confidence            2222 4566666664

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=93.16  E-value=2.8  Score=38.19  Aligned_cols=96  Identities=7%  Similarity=0.034  Sum_probs=55.2

Q ss_pred             CCEEEEEecCceeEEEEeCCCCc--E-E------eccCCccCCcEEEE---cCeEEEEeCcEEEEecCCceEE-------
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLG--W-T------VEDYGWLQGPMAIV---HDSVYLMSHGLIIKQHRDVRKV-------  240 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~--W-~------~~~~~~~~~~~~~~---~~~ly~~g~~~~~~yd~~~W~~-------  240 (317)
                      +|++|++-|  +..++|+..+-.  + .      -++..+....+|..   ++++|++-|+..|.|+...-+.       
T Consensus       318 ~g~~~fFKg--~~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~~yw~yd~~~~~~~~gYPk~  395 (450)
T 1su3_A          318 RDEVRFFKG--NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKM  395 (450)
T ss_dssp             GTEEEEEET--TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETTEEEEEETTTTEECSSCSEE
T ss_pred             CCeEEEEeC--CEEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCCEEEEEeCCCccccCCCCcc
Confidence            799999966  456777643210  0 0      11111112334432   5899999999999998753222       


Q ss_pred             Ee-ccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          241 VA-SASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       241 v~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      +. ..|........+ +..++++|++-|              +..|.||..+.
T Consensus       396 I~~~fpgip~~iDAA-~~~~g~~YFFkg--------------~~ywr~d~~~~  433 (450)
T 1su3_A          396 IAHDFPGIGHKVDAV-FMKDGFFYFFHG--------------TRQYKFDPKTK  433 (450)
T ss_dssp             HHHHSTTSCSCCSEE-EEETTEEEEEET--------------TEEEEEETTTT
T ss_pred             hhhcCCCCCCCccEE-EEcCCeEEEEeC--------------CEEEEEECCcc
Confidence            21 112111223333 346899999976              25688888776

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=92.99  E-value=3  Score=33.65  Aligned_cols=96  Identities=7%  Similarity=-0.005  Sum_probs=56.2

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcE---EeccCC-cc----CCcEEEE---cCeEEEEeCcEEEEecCCceEEEecccc--
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGW---TVEDYG-WL----QGPMAIV---HDSVYLMSHGLIIKQHRDVRKVVASASE--  246 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W---~~~~~~-~~----~~~~~~~---~~~ly~~g~~~~~~yd~~~W~~v~~~~~--  246 (317)
                      ++++|++-|  +..++|+..+-.-   ..+... .+    ...+|..   ++++|++.|+..+.||..+-+....-|.  
T Consensus        79 ~~~iyfFkG--~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~~ywr~d~~~~~~d~gyPr~i  156 (207)
T 1pex_A           79 HDLIFIFRG--RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRLI  156 (207)
T ss_dssp             TTEEEEEET--TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETTEEEEEETTTTEECSSCCCBH
T ss_pred             CCcEEEEcc--CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCCEEEEEeCcCccccCCCCccH
Confidence            689999976  4577776432111   122211 11    2344443   4799999999999999764222211111  


Q ss_pred             ------ccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          247 ------FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       247 ------~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                            ...+...++ ..++++|++-|              +..+.||..+.
T Consensus       157 ~~~~~Gip~~iDaAf-~~~g~~YfFkg--------------~~y~rf~~~~~  193 (207)
T 1pex_A          157 EEDFPGIGDKVDAVY-EKNGYIYFFNG--------------PIQFEYSIWSN  193 (207)
T ss_dssp             HHHSTTSCSCCSEEE-EETTEEEEEET--------------TEEEEEETTTT
T ss_pred             HHcCCCCCCCccEEE-EcCCcEEEEEC--------------CEEEEEeCCcc
Confidence                  112233334 46899999966              26678888776

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=92.98  E-value=1.9  Score=36.35  Aligned_cols=95  Identities=9%  Similarity=-0.052  Sum_probs=49.7

Q ss_pred             ceeEEeeCCCCceeeCCCCCccC-CCceEEEEECC-EEEEEecCceeEEEEeCCCCcEEe-ccCCc------cCCcEEEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTH-NSACTGVVIGG-KVHVLHKGLSTVQVLDHMGLGWTV-EDYGW------LQGPMAIV  218 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~-r~~~~~~~~~g-~lyv~gG~~~~v~~yd~~~~~W~~-~~~~~------~~~~~~~~  218 (317)
                      ..+.++|..+.+-...-.++... .....+..-+| .+|+.+.....+..+|+.+.+-.. +....      ....++..
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s   90 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS   90 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC
T ss_pred             CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC
Confidence            45667777666543221222100 00112222345 688877666789999998876432 22111      12233332


Q ss_pred             -cC-eEEEEe-------------CcEEEEecCCceEEEe
Q 021080          219 -HD-SVYLMS-------------HGLIIKQHRDVRKVVA  242 (317)
Q Consensus       219 -~~-~ly~~g-------------~~~~~~yd~~~W~~v~  242 (317)
                       ++ .+|+..             .+.++.||.++.+.+.
T Consensus        91 ~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~  129 (337)
T 1pby_B           91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK  129 (337)
T ss_dssp             TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence             34 677773             4789999987644333

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=92.94  E-value=2.6  Score=35.82  Aligned_cols=87  Identities=13%  Similarity=0.022  Sum_probs=48.9

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEE--ECCEEEEEecCc----eeEEEEeCCCCcEEec-cCCcc--CC-cEEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVV--IGGKVHVLHKGL----STVQVLDHMGLGWTVE-DYGWL--QG-PMAI  217 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~--~~g~lyv~gG~~----~~v~~yd~~~~~W~~~-~~~~~--~~-~~~~  217 (317)
                      ..+.+||+.+++...+...+..   ...++.  -+|++|+.....    ..+..||+.++....+ .....  .. .++.
T Consensus        66 ~~i~~~d~~~~~~~~~~~~~~~---~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~  142 (333)
T 2dg1_A           66 GNIFKINPETKEIKRPFVSHKA---NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF  142 (333)
T ss_dssp             CEEEEECTTTCCEEEEEECSSS---SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE
T ss_pred             CEEEEEeCCCCcEEEEeeCCCC---CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEE
Confidence            3566777777766554211111   122333  367888876432    5799999988876522 21111  11 1122


Q ss_pred             -EcCeEEEEeC--------cEEEEecCCc
Q 021080          218 -VHDSVYLMSH--------GLIIKQHRDV  237 (317)
Q Consensus       218 -~~~~ly~~g~--------~~~~~yd~~~  237 (317)
                       -++++|+...        +.++.++++.
T Consensus       143 d~~g~l~v~~~~~~~~~~~~~l~~~~~~~  171 (333)
T 2dg1_A          143 DSKGGFYFTDFRGYSTNPLGGVYYVSPDF  171 (333)
T ss_dssp             CTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             CCCCCEEEEeccccccCCCceEEEEeCCC
Confidence             2678888754        5789998764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=92.94  E-value=1.3  Score=38.38  Aligned_cols=140  Identities=9%  Similarity=0.042  Sum_probs=67.9

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEE--ECCEEEEEecCceeEEEEeCCCCcEEeccCCccC-CcE--EEE--cC
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVV--IGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ-GPM--AIV--HD  220 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~--~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~-~~~--~~~--~~  220 (317)
                      ..+.+||..+++|.....+..++......+.  -++++.+.|+....+..||..++.+..+.....+ ..+  +..  ++
T Consensus        38 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  117 (345)
T 3fm0_A           38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG  117 (345)
T ss_dssp             SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS
T ss_pred             CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC
Confidence            3466677777766533222112111222222  2677777777666788888877766544322221 111  111  45


Q ss_pred             eEEEEeC--cEEEEecCCc---eEEEeccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCCCC
Q 021080          221 SVYLMSH--GLIIKQHRDV---RKVVASASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERP  294 (317)
Q Consensus       221 ~ly~~g~--~~~~~yd~~~---W~~v~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~  294 (317)
                      ++++.++  +.++.+|...   +..+..+.. ....-..++.. ++++++.|+.+            ..|.+||.+++  
T Consensus       118 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d------------~~i~~w~~~~~--  182 (345)
T 3fm0_A          118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNS-HTQDVKHVVWHPSQELLASASYD------------DTVKLYREEED--  182 (345)
T ss_dssp             SEEEEEETTSCEEEEEECTTSCEEEEEEECC-CCSCEEEEEECSSSSCEEEEETT------------SCEEEEEEETT--
T ss_pred             CEEEEEECCCeEEEEECCCCCCeEEEEEecC-cCCCeEEEEECCCCCEEEEEeCC------------CcEEEEEecCC--
Confidence            5555543  5677776543   444433321 01111112222 45666666533            25677888777  


Q ss_pred             ceeecccC
Q 021080          295 TWRQVSPM  302 (317)
Q Consensus       295 ~W~~~~~~  302 (317)
                      +|..+..+
T Consensus       183 ~~~~~~~~  190 (345)
T 3fm0_A          183 DWVCCATL  190 (345)
T ss_dssp             EEEEEEEE
T ss_pred             CEEEEEEe
Confidence            77654443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=92.92  E-value=4.5  Score=35.51  Aligned_cols=174  Identities=9%  Similarity=-0.045  Sum_probs=87.4

Q ss_pred             CCceEEEeCCCCCEeecCCCCccccccCCeeEEEe-CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCc
Q 021080           66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCR  144 (317)
Q Consensus        66 ~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~  144 (317)
                      ...+..||..+++..........   ..-.+++.. ++..+++|+.+                                 
T Consensus       112 d~~v~lw~~~~~~~~~~~~~~~~---~~v~~v~~s~~~~~l~~~~~d---------------------------------  155 (401)
T 4aez_A          112 ERNVYVWNADSGSVSALAETDES---TYVASVKWSHDGSFLSVGLGN---------------------------------  155 (401)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTT---CCEEEEEECTTSSEEEEEETT---------------------------------
T ss_pred             CCeEEEeeCCCCcEeEeeecCCC---CCEEEEEECCCCCEEEEECCC---------------------------------
Confidence            35788999988877655443221   111222222 45566666542                                 


Q ss_pred             CCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCccCCcEEEE--cC
Q 021080          145 KSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQGPMAIV--HD  220 (317)
Q Consensus       145 ~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~--~~  220 (317)
                         ..+.+||..+++-...-.-.   ......+..++.+++.|+....+..||.....  -..+............  ++
T Consensus       156 ---g~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  229 (401)
T 4aez_A          156 ---GLVDIYDVESQTKLRTMAGH---QARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG  229 (401)
T ss_dssp             ---SCEEEEETTTCCEEEEECCC---SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             ---CeEEEEECcCCeEEEEecCC---CCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC
Confidence               24556666655432221111   22223444467777777767789999987433  1112111111111112  45


Q ss_pred             eEEEEeC--cEEEEecCCceEEEeccccccccccEEEEEE--CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          221 SVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGM--GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       221 ~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .+++.++  +.+..||..+-+.+..+.. ....-.++...  ++.+++.||-...          ..+.+||..++
T Consensus       230 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~ll~~~~gs~d----------~~i~i~d~~~~  294 (401)
T 4aez_A          230 LQLASGGNDNVVQIWDARSSIPKFTKTN-HNAAVKAVAWCPWQSNLLATGGGTMD----------KQIHFWNAATG  294 (401)
T ss_dssp             SEEEEEETTSCEEEEETTCSSEEEEECC-CSSCCCEEEECTTSTTEEEEECCTTT----------CEEEEEETTTC
T ss_pred             CEEEEEeCCCeEEEccCCCCCccEEecC-CcceEEEEEECCCCCCEEEEecCCCC----------CEEEEEECCCC
Confidence            5555554  6888888876333222221 11111222322  4577777752222          26788888776

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=92.86  E-value=2.1  Score=37.01  Aligned_cols=105  Identities=18%  Similarity=0.126  Sum_probs=49.3

Q ss_pred             eEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeEec
Q 021080           57 LLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD  134 (317)
Q Consensus        57 ~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d  134 (317)
                      .+++.|+ ....+..||..++.|..+..+...   ......+..  ++..++.|+.+                       
T Consensus        24 ~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~s~d-----------------------   76 (377)
T 3dwl_C           24 TEFVTTT-ATNQVELYEQDGNGWKHARTFSDH---DKIVTCVDWAPKSNRIVTCSQD-----------------------   76 (377)
T ss_dssp             SEEECCC-SSSCBCEEEEETTEEEECCCBCCC---SSCEEEEEECTTTCCEEEEETT-----------------------
T ss_pred             CEEEEec-CCCEEEEEEccCCceEEEEEEecC---CceEEEEEEeCCCCEEEEEeCC-----------------------
Confidence            3344443 235778888888888776665532   222222222  45666666643                       


Q ss_pred             ccCCCCCCCcCCCceeEEeeCCCCc-eeeCCCCCccCCCceEEEE--ECCEEEEEecCceeEEEEeCCCCc
Q 021080          135 PVTRGFTSCRKSISQAEMYDPEKDV-WVPIPDLHRTHNSACTGVV--IGGKVHVLHKGLSTVQVLDHMGLG  202 (317)
Q Consensus       135 ~~~~G~~~~~~~~~~~~~yd~~t~~-W~~~~~~p~~~r~~~~~~~--~~g~lyv~gG~~~~v~~yd~~~~~  202 (317)
                                   ..+.+||..+++ |.....+... ......+.  -++++++.|+....+..||..++.
T Consensus        77 -------------~~v~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  133 (377)
T 3dwl_C           77 -------------RNAYVYEKRPDGTWKQTLVLLRL-NRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN  133 (377)
T ss_dssp             -------------SSEEEC------CCCCEEECCCC-SSCEEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred             -------------CeEEEEEcCCCCceeeeeEeccc-CCceEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence                         245556666655 4333222111 11222222  256666777656678888887764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=92.84  E-value=4.3  Score=35.20  Aligned_cols=129  Identities=11%  Similarity=-0.001  Sum_probs=62.6

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEEE---CCEEEEEecCceeEEEEeCCCCcE-EeccCCccCCcEEEE--cC-e
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVI---GGKVHVLHKGLSTVQVLDHMGLGW-TVEDYGWLQGPMAIV--HD-S  221 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~---~g~lyv~gG~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~--~~-~  221 (317)
                      .+.+||.++.+-...-..... ......+.+   ++.+++.|+....+..||..+.+= ..+............  ++ +
T Consensus       205 ~v~~wd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  283 (357)
T 4g56_B          205 RILLWDTRKPKPATRIDFCAS-DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSP  283 (357)
T ss_dssp             CEEECCTTSSSCBCBCCCTTC-CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSC
T ss_pred             ceEEEECCCCceeeeeeeccc-cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCC
Confidence            455677666543332222222 222233333   356777777667789999876541 111111111111222  33 4


Q ss_pred             EEEEeC--cEEEEecCCceEEEeccccccccccEEEEE--ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          222 VYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIG--MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       222 ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      +.+.++  +.++.||.+.-+.+..+.  ....-.+++.  .++++++.||.++            .|.+||+.++
T Consensus       284 ~lasgs~D~~i~iwd~~~~~~~~~~~--H~~~V~~vafsP~d~~~l~s~s~Dg------------~v~iW~~~~~  344 (357)
T 4g56_B          284 FLASISEDCTVAVLDADFSEVFRDLS--HRDFVTGVAWSPLDHSKFTTVGWDH------------KVLHHHLPSE  344 (357)
T ss_dssp             CEEEEETTSCEEEECTTSCEEEEECC--CSSCEEEEEECSSSTTEEEEEETTS------------CEEEEECC--
T ss_pred             EEEEEeCCCEEEEEECCCCcEeEECC--CCCCEEEEEEeCCCCCEEEEEcCCC------------eEEEEECCCC
Confidence            444333  678888887744443332  1111122332  3577888887542            5677887654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=92.83  E-value=5  Score=35.75  Aligned_cols=133  Identities=11%  Similarity=0.012  Sum_probs=67.4

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEE-ECCE-EEEEec--CceeEEEEeCCCCcEEeccCCccCCcEEE--EcCe
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVV-IGGK-VHVLHK--GLSTVQVLDHMGLGWTVEDYGWLQGPMAI--VHDS  221 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~-~~g~-lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~~~~~~~--~~~~  221 (317)
                      ..++++|..+++...+..-...   ...... -+|+ |++.+.  ....++.+|..++.-..+...........  -+++
T Consensus       247 ~~i~~~d~~~~~~~~l~~~~~~---~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~  323 (415)
T 2hqs_A          247 LNLYVMDLASGQIRQVTDGRSN---NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGK  323 (415)
T ss_dssp             CEEEEEETTTCCEEECCCCSSC---EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSS
T ss_pred             ceEEEEECCCCCEEeCcCCCCc---ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCC
Confidence            4677788888776665443221   111222 2555 444443  23478889998876554432211111111  2444


Q ss_pred             -EEEEeC----cEEEEecCCc--eEEEeccccccccccEEEE-EECCeEEEEeCcccCCCCceecccCcceeEeecCCCC
Q 021080          222 -VYLMSH----GLIIKQHRDV--RKVVASASEFRRRIGFAMI-GMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAER  293 (317)
Q Consensus       222 -ly~~g~----~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  293 (317)
                       |++...    ..++.+|.++  .+.+...    . ....+. .-+++.+++++.+..         ...++++|++.+ 
T Consensus       324 ~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~----~-~~~~~~~spdg~~l~~~s~~~~---------~~~l~~~d~~g~-  388 (415)
T 2hqs_A          324 FMVMVSSNGGQQHIAKQDLATGGVQVLSST----F-LDETPSLAPNGTMVIYSSSQGM---------GSVLNLVSTDGR-  388 (415)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEECCCS----S-SCEEEEECTTSSEEEEEEEETT---------EEEEEEEETTSC-
T ss_pred             EEEEEECcCCceEEEEEECCCCCEEEecCC----C-CcCCeEEcCCCCEEEEEEcCCC---------ccEEEEEECCCC-
Confidence             443332    4788888776  4443221    1 111222 225666666654322         237889998876 


Q ss_pred             Cceeec
Q 021080          294 PTWRQV  299 (317)
Q Consensus       294 ~~W~~~  299 (317)
                       .-..+
T Consensus       389 -~~~~l  393 (415)
T 2hqs_A          389 -FKARL  393 (415)
T ss_dssp             -CEEEC
T ss_pred             -cEEEe
Confidence             55554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=92.75  E-value=3.6  Score=33.92  Aligned_cols=96  Identities=9%  Similarity=0.060  Sum_probs=58.5

Q ss_pred             CCEEEEEecC--ceeEEEEeCCCCcEEeccC--CccCCcEEEE--cCeEEEEeC--cEEEEecCCc-e-E-EEecccccc
Q 021080          180 GGKVHVLHKG--LSTVQVLDHMGLGWTVEDY--GWLQGPMAIV--HDSVYLMSH--GLIIKQHRDV-R-K-VVASASEFR  248 (317)
Q Consensus       180 ~g~lyv~gG~--~~~v~~yd~~~~~W~~~~~--~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~-W-~-~v~~~~~~~  248 (317)
                      +++||+....  ...++++++....-+.+..  ...+..++.-  ++.||+...  +.+..++.+. - + .+...    
T Consensus       133 ~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~----  208 (267)
T 1npe_A          133 RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL----  208 (267)
T ss_dssp             TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC----
T ss_pred             CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC----
Confidence            6899998753  4678898886544333321  1112233332  568999985  7899999875 1 1 12111    


Q ss_pred             ccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          249 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       249 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                       ..-.+++..++.||+....            .+.|.++|++++
T Consensus       209 -~~P~gi~~d~~~lyva~~~------------~~~v~~~d~~~g  239 (267)
T 1npe_A          209 -QYPFAVTSYGKNLYYTDWK------------TNSVIAMDLAIS  239 (267)
T ss_dssp             -CSEEEEEEETTEEEEEETT------------TTEEEEEETTTT
T ss_pred             -CCceEEEEeCCEEEEEECC------------CCeEEEEeCCCC
Confidence             1223556668999996431            237889999876

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=92.74  E-value=3.2  Score=35.66  Aligned_cols=89  Identities=7%  Similarity=-0.133  Sum_probs=46.8

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEe-ccCCccCCcEE--EE--cCeEEEEeC--cEEEEecCCceEEEecccccccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTV-EDYGWLQGPMA--IV--HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIG  252 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~-~~~~~~~~~~~--~~--~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~  252 (317)
                      ++++++.|+....+..||..++.-.. .........+.  ..  ++++++.++  +.+..||....+.+..+..-.... 
T Consensus       237 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v-  315 (340)
T 1got_B          237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV-  315 (340)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcE-
Confidence            56777777766779999998765321 11110011121  11  456666654  688899887755544443201111 


Q ss_pred             EEEEE-ECCeEEEEeCcc
Q 021080          253 FAMIG-MGDDIYVIGGVI  269 (317)
Q Consensus       253 ~~~~~-~~~~lyv~GG~~  269 (317)
                      ..+.. -+++.++.|+.+
T Consensus       316 ~~~~~s~dg~~l~s~s~D  333 (340)
T 1got_B          316 SCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             EEEEECTTSSCEEEEETT
T ss_pred             EEEEEcCCCCEEEEEcCC
Confidence            12222 256666777644

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=92.74  E-value=2.6  Score=36.79  Aligned_cols=100  Identities=13%  Similarity=-0.064  Sum_probs=50.6

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEE-eccCCccC-CcEEEE-cCeEEEEeC-cEEEEecCCceEEEeccccccccccEEE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQ-GPMAIV-HDSVYLMSH-GLIIKQHRDVRKVVASASEFRRRIGFAM  255 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~~~-~~~~~~-~~~ly~~g~-~~~~~yd~~~W~~v~~~~~~~~r~~~~~  255 (317)
                      ++++++.|+....+..||..+..-. .+...... ..++.. ++.++..+. +.+..||....+.+..+.. ....-..+
T Consensus       258 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~  336 (425)
T 1r5m_A          258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIV-DGVPIFAG  336 (425)
T ss_dssp             TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEEC-TTCCEEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEeccc-CCccEEEE
Confidence            5666677776677889998765421 11111111 122222 343333332 7899999877554444331 11111122


Q ss_pred             EE-ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          256 IG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       256 ~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .. -++++++.|+.+            ..|.+||+.+.
T Consensus       337 ~~s~~~~~l~~~~~d------------g~i~i~~~~~~  362 (425)
T 1r5m_A          337 RISQDGQKYAVAFMD------------GQVNVYDLKKL  362 (425)
T ss_dssp             EECTTSSEEEEEETT------------SCEEEEECHHH
T ss_pred             EEcCCCCEEEEEECC------------CeEEEEECCCC
Confidence            22 246666666532            25677777655

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=92.34  E-value=4.7  Score=34.26  Aligned_cols=23  Identities=4%  Similarity=-0.179  Sum_probs=16.7

Q ss_pred             CCEEEEEecCceeEEEEeCCCCc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLG  202 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~  202 (317)
                      ++...+.|+....+..||..+.+
T Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~  194 (366)
T 3k26_A          172 LGEKIMSCGMDHSLKLWRINSKR  194 (366)
T ss_dssp             TSSEEEEEETTSCEEEEESCSHH
T ss_pred             CCCEEEEecCCCCEEEEECCCCc
Confidence            46666777766779999988654

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=92.30  E-value=5.9  Score=36.16  Aligned_cols=90  Identities=10%  Similarity=0.076  Sum_probs=51.8

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCc------------EEeccCC---------------------ccCCcEEE--Ec
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG------------WTVEDYG---------------------WLQGPMAI--VH  219 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~------------W~~~~~~---------------------~~~~~~~~--~~  219 (317)
                      +|...+|++|++-|  +..++||..+++            |...+..                     .....+++  .+
T Consensus       192 AA~~~~g~~YfFkG--~~y~rfd~~~~~v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~  269 (460)
T 1qhu_A          192 SALRWLGRYYCFQG--NQFLRFNPVSGEVPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNH  269 (460)
T ss_dssp             EEEEETTEEEEEET--TEEEEECTTTCCCCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTT
T ss_pred             hheeeCCceEEEEC--CEEEEEcCccCcccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCC
Confidence            45667899999977  467888876543            2221110                     00122333  36


Q ss_pred             CeEEEEeCcEEEEecCCc--eE--EE-eccccccccccEEEEEECCeEEEEeC
Q 021080          220 DSVYLMSHGLIIKQHRDV--RK--VV-ASASEFRRRIGFAMIGMGDDIYVIGG  267 (317)
Q Consensus       220 ~~ly~~g~~~~~~yd~~~--W~--~v-~~~~~~~~r~~~~~~~~~~~lyv~GG  267 (317)
                      |++|++-++..+.++...  +.  .+ ...|....... ++...++++|+|=|
T Consensus       270 G~tYFFKg~~yWR~~~~~~~~~p~~Is~~WpglP~~ID-AAf~~~~~~yfFkG  321 (460)
T 1qhu_A          270 GATYVFSGSHYWRLDTNRDGWHSWPIAHQWPQGPSTVD-AAFSWEDKLYLIQD  321 (460)
T ss_dssp             CCEEEEETTEEEECTTGGGCCCCEEGGGTCTTSCSSCS-EEEEETTEEEEEET
T ss_pred             CeEEEEeCCEEEEEecCCCCcCccchhhhccCCCCCCc-EEEEECCeEEEEeC
Confidence            899999999999998643  21  11 11121112222 33445789999865

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=92.27  E-value=8.9  Score=37.35  Aligned_cols=186  Identities=9%  Similarity=0.037  Sum_probs=98.3

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEE-EeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVV-STAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      ++.|++...   ..+.+||+.+++...+....... ...-.++. .-++.|++...                        
T Consensus        98 ~g~lWigT~---~Gl~~yd~~~~~f~~~~~~~~~~-~~~i~~i~~d~~g~lwi~t~------------------------  149 (795)
T 4a2l_A           98 QGRVWIGTR---DGLSRYDEEKDIFQNFFYEKNGK-HLQVNGIEEISPEQLLISTP------------------------  149 (795)
T ss_dssp             TSCEEEEES---SCEEEEETTTTEEEEECCEETTE-ECCCCEEEEEETTEEEEEET------------------------
T ss_pred             CCCEEEEeC---CchheeCCCCCeEEeccccccCC-CceEEEEEECCCCCEEEEEC------------------------
Confidence            345665442   46788999888877654321110 00011222 23667776542                        


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCCC-CCccCC-CceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCcc
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPD-LHRTHN-SACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL  211 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~-~p~~~r-~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~  211 (317)
                                    ..+.+||.+++++..+.. .+.. . ...-..--+|.||+.. ....+..||+.++++........
T Consensus       150 --------------~gl~~~~~~~~~~~~~~~~~~~~-~~i~~i~~d~~g~lwigt-~~~Gl~~~~~~~~~~~~~~~~~~  213 (795)
T 4a2l_A          150 --------------EGLIMFDIKESKFIDDSFSTAMH-KTIASTLYRQGDQIYIGT-STDGLYTYSITQKTFEKVIPILG  213 (795)
T ss_dssp             --------------TEEEEEETTTTEEECSSSCHHHH-TCCEEEEEEETTEEEEEE-SSSCEEEEETTTCCEEECC----
T ss_pred             --------------CceEEEECCCCEEEeccCCCCCC-cceEEEEECCCCCEEEEE-CCCCEEEEeCCCCeEEEecCCCC
Confidence                          235667777777765533 1111 1 1112223478888843 22358999999999887642211


Q ss_pred             CCc---EE-EEcCeEEEEe-CcEEEEecCCc--eEEEeccc---c-ccccccEEEEEE-CCeEEEEeCcccCCCCceecc
Q 021080          212 QGP---MA-IVHDSVYLMS-HGLIIKQHRDV--RKVVASAS---E-FRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIK  279 (317)
Q Consensus       212 ~~~---~~-~~~~~ly~~g-~~~~~~yd~~~--W~~v~~~~---~-~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~  279 (317)
                      ...   +. .-++.|++.. ++.++.||+++  ++.....+   . .....-.++... +|.|++-..            
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~------------  281 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF------------  281 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES------------
T ss_pred             CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC------------
Confidence            111   11 2367788775 45799999875  66554321   0 011111223333 567776321            


Q ss_pred             cCcceeEeecCCCCCceeecc
Q 021080          280 PMSDVDVLTVGAERPTWRQVS  300 (317)
Q Consensus       280 ~~~~v~~yd~~~~~~~W~~~~  300 (317)
                        ..+.+||+.++  ++..+.
T Consensus       282 --~Gl~~~~~~~~--~~~~~~  298 (795)
T 4a2l_A          282 --NDLNIYHEGTD--SFASYS  298 (795)
T ss_dssp             --SCEEEEETTTT--EEEEEC
T ss_pred             --ChhheEcCCCC--eEEEEe
Confidence              14677888877  777664

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=92.22  E-value=4.5  Score=34.30  Aligned_cols=60  Identities=15%  Similarity=-0.129  Sum_probs=33.7

Q ss_pred             CCEEEEEecCceeEEEEeCCCCc--EEeccCCcc----CCcEEE------EcCeEEEEeC--cEEEEecCCceE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWL----QGPMAI------VHDSVYLMSH--GLIIKQHRDVRK  239 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~----~~~~~~------~~~~ly~~g~--~~~~~yd~~~W~  239 (317)
                      +++..+.|+....+..||+.+..  ...+.....    ......      .++.+++.+.  +.+..||.+.-+
T Consensus       128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  201 (357)
T 3i2n_A          128 GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA  201 (357)
T ss_dssp             CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred             CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence            46666777766778899988764  333322111    111111      2455555553  688899887733

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=92.20  E-value=6.4  Score=36.67  Aligned_cols=114  Identities=8%  Similarity=0.043  Sum_probs=59.6

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcE---EeccCCccCCcEEE-EcCe-EEEEeC--cEEEEecCCceEEEecccc---ccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGW---TVEDYGWLQGPMAI-VHDS-VYLMSH--GLIIKQHRDVRKVVASASE---FRR  249 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W---~~~~~~~~~~~~~~-~~~~-ly~~g~--~~~~~yd~~~W~~v~~~~~---~~~  249 (317)
                      ++.+|+.......+..+|..+..-   ..++.....+..+. -+++ +|+...  +.+..+|.++-+.+..++.   +..
T Consensus       291 ~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~  370 (543)
T 1nir_A          291 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP  370 (543)
T ss_dssp             SSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC
T ss_pred             CCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC
Confidence            456666655667889999876431   12222111223332 2455 555542  6888899887444433331   111


Q ss_pred             cccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCC---CCceeecccCCC
Q 021080          250 RIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE---RPTWRQVSPMTR  304 (317)
Q Consensus       250 r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~---~~~W~~~~~~p~  304 (317)
                      ..+..+..- ++.+|+.+....           +.|.+||..+.   ...|+.+..++.
T Consensus       371 g~g~~~~~p~~g~~~~s~~~~d-----------~~V~v~d~~~~~~~~~~~~~v~~l~~  418 (543)
T 1nir_A          371 GRGANFVHPKYGPVWSTSHLGD-----------GSISLIGTDPKNHPQYAWKKVAELQG  418 (543)
T ss_dssp             TTCEEEEETTTEEEEEEEBSSS-----------SEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred             CCCcccCCCCCccEEEeccCCC-----------ceEEEEEeCCCCCchhcCeEEEEEEc
Confidence            122222221 467887764322           26778888763   113887766654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=91.84  E-value=2  Score=36.56  Aligned_cols=56  Identities=13%  Similarity=-0.004  Sum_probs=31.6

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEE-EECC-EEEEEecCceeEEEEeCCCCcEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGV-VIGG-KVHVLHKGLSTVQVLDHMGLGWT  204 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~-~~~g-~lyv~gG~~~~v~~yd~~~~~W~  204 (317)
                      ..+.++|+.+++....-+.+.. ......+ .-+| .+|+.+.....+..||+.+++-.
T Consensus        21 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~   78 (349)
T 1jmx_B           21 NNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   78 (349)
T ss_dssp             TEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CeEEEEECCCCcEEEEEecCCC-CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence            4566777777655432222221 0111222 2344 57887765678999999887643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=91.81  E-value=6.5  Score=34.76  Aligned_cols=42  Identities=17%  Similarity=0.140  Sum_probs=24.7

Q ss_pred             CceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCcC
Q 021080           67 NLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGS  111 (317)
Q Consensus        67 ~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~~  111 (317)
                      ..++.+|..+++...+-.+...   ......+..  ++..++.|+.+
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~---~~~V~sv~fspdg~~lasgs~D  168 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQP---GEYISSVAWIKEGNYLAVGTSS  168 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCST---TCCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEECCCCCEEEEEEecCC---CCcEEEEEECCCCCEEEEEECC
Confidence            6899999999887665444331   122222222  45667777653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=91.74  E-value=6  Score=34.22  Aligned_cols=130  Identities=11%  Similarity=-0.011  Sum_probs=59.8

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEE---CCEEEEEecCceeEEEEeCCCCcE-EeccCCccCCcEEEE--cC-
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI---GGKVHVLHKGLSTVQVLDHMGLGW-TVEDYGWLQGPMAIV--HD-  220 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~---~g~lyv~gG~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~--~~-  220 (317)
                      ..+.+||.++.+-...-..... .....++..   ++++++.|+....|..||..+.+- ..+.........+..  ++ 
T Consensus       192 ~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~  270 (344)
T 4gqb_B          192 NRILLWDTRCPKPASQIGCSAP-GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSV  270 (344)
T ss_dssp             SCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSS
T ss_pred             cccccccccccceeeeeeccee-eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence            3466777776653322111111 111222222   456777777667899999877641 111111111111222  33 


Q ss_pred             eEEEEeC--cEEEEecCCceEEEeccccccccccEEEEE--ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          221 SVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIG--MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       221 ~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ++.+.++  +.++.||.++-+.+....  ....-.+++.  .+..+++.||.++            .|.+|++.++
T Consensus       271 ~~lasgs~D~~i~vwd~~~~~~~~~~~--H~~~V~~v~~sp~~~~llas~s~D~------------~v~~w~v~~~  332 (344)
T 4gqb_B          271 PFLASLSEDCSLAVLDSSLSELFRSQA--HRDFVRDATWSPLNHSLLTTVGWDH------------QVVHHVVPTE  332 (344)
T ss_dssp             CCEEEEETTSCEEEECTTCCEEEEECC--CSSCEEEEEECSSSTTEEEEEETTS------------CEEEEECCC-
T ss_pred             eEEEEEeCCCeEEEEECCCCcEEEEcC--CCCCEEEEEEeCCCCeEEEEEcCCC------------eEEEEECCCC
Confidence            3444332  678888877644332111  1111122222  2446777777542            4677888765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=91.59  E-value=2.3  Score=37.45  Aligned_cols=88  Identities=9%  Similarity=-0.094  Sum_probs=46.4

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEEE--CCEEEEEecCceeEEEEeCCCCcEEec--cCCccC-CcEEE--EcCe
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLGWTVE--DYGWLQ-GPMAI--VHDS  221 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~--~g~lyv~gG~~~~v~~yd~~~~~W~~~--~~~~~~-~~~~~--~~~~  221 (317)
                      .+.+||..+++....-..... ......+.+  ++++++.|+....+..||+.+.+-...  ...... ...+.  -+++
T Consensus       155 ~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (402)
T 2aq5_A          155 VILVWDVGTGAAVLTLGPDVH-PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK  233 (402)
T ss_dssp             CEEEEETTTTEEEEEECTTTC-CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred             EEEEEECCCCCccEEEecCCC-CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence            456677766654322100111 112222322  677777777667899999988763322  111111 12222  2567


Q ss_pred             EEEEe-----CcEEEEecCCc
Q 021080          222 VYLMS-----HGLIIKQHRDV  237 (317)
Q Consensus       222 ly~~g-----~~~~~~yd~~~  237 (317)
                      +++.+     .+.+..||...
T Consensus       234 ~l~~g~~~~~d~~i~iwd~~~  254 (402)
T 2aq5_A          234 ILTTGFSRMSERQVALWDTKH  254 (402)
T ss_dssp             EEEEEECTTCCEEEEEEETTB
T ss_pred             EEEEeccCCCCceEEEEcCcc
Confidence            77776     36888898776

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=91.58  E-value=6  Score=33.87  Aligned_cols=132  Identities=7%  Similarity=-0.065  Sum_probs=64.9

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEe-ccCCccCCcEEEE--cCeEEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTV-EDYGWLQGPMAIV--HDSVYL  224 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~--~~~ly~  224 (317)
                      ..+.+||..+.+-...-.-+.. .....+..-++++++.|+....+..||..+..-.. +.........+..  ++.+++
T Consensus       164 ~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~  242 (340)
T 1got_B          164 TTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA  242 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CcEEEEECCCCcEEEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEE
Confidence            4577788877654322111111 11111122266778888767789999998765321 1111111111122  455555


Q ss_pred             EeC--cEEEEecCCceEEEeccccccccccEEEEEE--CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          225 MSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGM--GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       225 ~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .++  +.+..||...-+.+..............+.+  ++++++.|+.+            ..|.+||..+.
T Consensus       243 s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------------~~i~vwd~~~~  302 (340)
T 1got_B          243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD------------FNCNVWDALKA  302 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT------------SEEEEEETTTC
T ss_pred             EEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCC------------CeEEEEEcccC
Confidence            554  6788888776333322221011111222222  56777776632            25778887655

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=91.56  E-value=6.6  Score=34.33  Aligned_cols=23  Identities=9%  Similarity=-0.075  Sum_probs=17.0

Q ss_pred             CCEEEEEecCceeEEEEeCCCCc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLG  202 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~  202 (317)
                      +++.++.|+....+..||..+.+
T Consensus       192 ~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          192 RGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             TTTEEEEEETTSCEEEEETTTTE
T ss_pred             CCCEEEEEcCCCcEEEeECCCCc
Confidence            56666677756678899988765

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=91.54  E-value=4.4  Score=32.29  Aligned_cols=55  Identities=7%  Similarity=0.040  Sum_probs=38.2

Q ss_pred             ECCEEEEEecCceeEEEEeCCCCc------------EEeccCCccCCcEEEEcCeEEEEeCcEEEEecCCc
Q 021080          179 IGGKVHVLHKGLSTVQVLDHMGLG------------WTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDV  237 (317)
Q Consensus       179 ~~g~lyv~gG~~~~v~~yd~~~~~------------W~~~~~~~~~~~~~~~~~~ly~~g~~~~~~yd~~~  237 (317)
                      .+|++|++-|  +..++||..+++            |.-++..  -.++...++.+|++.|+..+.|+..+
T Consensus       108 ~~g~~yfFkg--~~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~~--idaa~~~~g~~Yffkg~~y~~~~~~~  174 (195)
T 1itv_A          108 GRGKMLLFSG--RRLWRFDVKAQMVDPRSASEVDRMFPGVPLD--THDVFQFREKAYFCQDRFYWRVSSRS  174 (195)
T ss_dssp             STTEEEEEET--TEEEEEETTTTEECGGGCEEHHHHSTTSCSS--CSEEEEETTEEEEEETTEEEEEECCT
T ss_pred             CCCeEEEEeC--CEEEEEeCCcccccCCCccChhhcCCCCCCC--CCEEEEeCCeEEEEeCCEEEEEECCc
Confidence            4789999966  568999987754            2222110  12333457899999999999999765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=91.38  E-value=0.06  Score=50.84  Aligned_cols=33  Identities=18%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             CCCcHHHHHHHhccC-CCCchhhhhhcCHhHHHh
Q 021080            6 EGLPDAVALRCLARV-PFFLHPKLELVSRSWRAA   38 (317)
Q Consensus         6 ~~Lp~d~~~~~l~r~-p~~~~~~~~~v~k~w~~l   38 (317)
                      +.||||++.+||+++ +.++..+++.|||+|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            469999999999999 899999999999999987

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=91.36  E-value=5.3  Score=32.89  Aligned_cols=183  Identities=6%  Similarity=0.049  Sum_probs=93.5

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEE-eCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVS-TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      +..+|+... ....+..||+. ++..........   ..-.+++. -++.+|+.....                      
T Consensus        25 ~g~l~v~~~-~~~~v~~~d~~-~~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~----------------------   77 (299)
T 2z2n_A           25 KGKVWITQH-KANMISCINLD-GKITEYPLPTPD---AKVMCLTISSDGEVWFTENAA----------------------   77 (299)
T ss_dssp             TSCEEEEET-TTTEEEEECTT-CCEEEEECSSTT---CCEEEEEECTTSCEEEEETTT----------------------
T ss_pred             CCCEEEEec-CCCcEEEEcCC-CCeEEecCCccc---CceeeEEECCCCCEEEeCCCC----------------------
Confidence            455666542 23578999998 777654321111   12233433 356788875421                      


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEE--CCEEEEEecCceeEEEEeCCCCcEEeccCCc-
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW-  210 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~--~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~-  210 (317)
                                    ..+.+||+. ++.+.+. ++.. ......+..  +|++|+.......+..||+ ++......... 
T Consensus        78 --------------~~i~~~~~~-g~~~~~~-~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~  139 (299)
T 2z2n_A           78 --------------NKIGRITKK-GIIKEYT-LPNP-DSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK  139 (299)
T ss_dssp             --------------TEEEEECTT-SCEEEEE-CSST-TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred             --------------CeEEEECCC-CcEEEEe-CCCc-CCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC
Confidence                          223444443 2332221 1111 112233333  5789987654567999999 66555442211 


Q ss_pred             -c-CCcEEEE-cCeEEEEeC--cEEEEecCCc-eEEEeccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcc
Q 021080          211 -L-QGPMAIV-HDSVYLMSH--GLIIKQHRDV-RKVVASASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSD  283 (317)
Q Consensus       211 -~-~~~~~~~-~~~ly~~g~--~~~~~yd~~~-W~~v~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~  283 (317)
                       . ...++.- ++++|+...  +.++.+|+.. ..... .+. ......+++.. +++||+....            .+.
T Consensus       140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~-~~~-~~~~~~~i~~~~~g~l~v~~~~------------~~~  205 (299)
T 2z2n_A          140 GSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFK-IPT-PASGPVGITKGNDDALWFVEII------------GNK  205 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE-CSS-TTCCEEEEEECTTSSEEEEETT------------TTE
T ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEee-CCC-CCCcceeEEECCCCCEEEEccC------------Cce
Confidence             1 1222222 578998873  7899999844 54432 121 11112233333 5678876431            235


Q ss_pred             eeEeecCCCCCceeec
Q 021080          284 VDVLTVGAERPTWRQV  299 (317)
Q Consensus       284 v~~yd~~~~~~~W~~~  299 (317)
                      +.+||+ ++  +...+
T Consensus       206 i~~~~~-~g--~~~~~  218 (299)
T 2z2n_A          206 IGRITT-SG--EITEF  218 (299)
T ss_dssp             EEEECT-TC--CEEEE
T ss_pred             EEEECC-CC--cEEEE
Confidence            777887 55  55443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=91.32  E-value=6.1  Score=33.49  Aligned_cols=61  Identities=13%  Similarity=0.023  Sum_probs=32.0

Q ss_pred             cCeEEEEeC--cEEEEecCCc-eEEEeccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          219 HDSVYLMSH--GLIIKQHRDV-RKVVASASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       219 ~~~ly~~g~--~~~~~yd~~~-W~~v~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      +++.++.++  +.+..||... .+.+..+..... .-..+... +++.++.|+.+            ..+.+||+.+.
T Consensus       186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d------------~~i~v~d~~~~  250 (369)
T 3zwl_B          186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRD------------TNSFLVDVSTL  250 (369)
T ss_dssp             GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETT------------SEEEEEETTTC
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCC------------ceEEEEECCCC
Confidence            344444443  7889999876 555544432111 11222222 55666666422            25778888766

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=91.24  E-value=3.3  Score=34.94  Aligned_cols=63  Identities=8%  Similarity=0.105  Sum_probs=40.3

Q ss_pred             EECCEEEEEecCceeEEEEeCC-CCcEEeccCCccCCcEEEE-cCeEEEEeC-cEEEEecCCc---eEEE
Q 021080          178 VIGGKVHVLHKGLSTVQVLDHM-GLGWTVEDYGWLQGPMAIV-HDSVYLMSH-GLIIKQHRDV---RKVV  241 (317)
Q Consensus       178 ~~~g~lyv~gG~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~-~~~ly~~g~-~~~~~yd~~~---W~~v  241 (317)
                      +.++.||+... ...+.+||+. ...|............+.. ++.+|+... +.++.||++.   |+.-
T Consensus       105 ~~~~~l~v~t~-~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~  173 (330)
T 3hxj_A          105 IFEDILYVTSM-DGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFK  173 (330)
T ss_dssp             EETTEEEEECT-TSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEE
T ss_pred             EECCEEEEEec-CCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEe
Confidence            34888887542 4568999987 3347655433222233333 778888765 7899999764   7654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.16  E-value=5.3  Score=38.62  Aligned_cols=58  Identities=5%  Similarity=-0.197  Sum_probs=30.6

Q ss_pred             CCEEEEEecCceeEEEEeCCCC-cEEec-cCCccCCcEEEE---cCeEEEEeC--cEEEEecCCc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGL-GWTVE-DYGWLQGPMAIV---HDSVYLMSH--GLIIKQHRDV  237 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~-~W~~~-~~~~~~~~~~~~---~~~ly~~g~--~~~~~yd~~~  237 (317)
                      +++..+.|+....+..||..++ ..... .........+..   ++.+++.++  +.+..||...
T Consensus       108 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~  172 (814)
T 3mkq_A          108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (814)
T ss_dssp             SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            5656666665677888998765 22211 111111111222   344555543  7788888654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=91.12  E-value=7.7  Score=34.29  Aligned_cols=55  Identities=15%  Similarity=0.006  Sum_probs=29.3

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGW  203 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W  203 (317)
                      ..+.+||..+++-...-.-+.. ........-++.+++.|+....+..||..+..-
T Consensus       214 ~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~  268 (410)
T 1vyh_C          214 KTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC  268 (410)
T ss_dssp             SEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CeEEEEECCCCcEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence            4667777776653221000111 111111123567777777667788898877654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=91.06  E-value=3.5  Score=38.44  Aligned_cols=78  Identities=15%  Similarity=0.078  Sum_probs=38.8

Q ss_pred             CCCcC--CCCcHHHHHHHhccCCCCc----hhhhhhcCHhHHHhhcChhhHHHHHhcC-CcCceEEEEEeCCCCceEEEe
Q 021080            1 MSELI--EGLPDAVALRCLARVPFFL----HPKLELVSRSWRAAIRSPELFKARQEVG-SSENLLCVCAFDPENLWQLYD   73 (317)
Q Consensus         1 ~~~~~--~~Lp~d~~~~~l~r~p~~~----~~~~~~v~k~w~~l~~s~~~~~~~~~~~-~~~~~l~v~gg~~~~~~~~yd   73 (317)
                      ||..-  ..|.++=+..+...+-...    -..+..+.+.|..+..-...+.. ..+. ..++.+|+.+.. ...+..+|
T Consensus        88 Mp~~~~~~~ls~~ei~~l~~yl~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~-~~~~~~p~~~~~vs~~~-d~~V~v~D  165 (543)
T 1nir_A           88 MPNWGSSGELSKEQITLMAKYIQHTPPQPPEWGMPEMRESWKVLVKPEDRPKK-QLNDLDLPNLFSVTLRD-AGQIALVD  165 (543)
T ss_dssp             CCCSTTTTSSCHHHHHHHHHHTTSCCCBCCCCCHHHHHHHCEESSCGGGSCSS-CCSCCCGGGEEEEEEGG-GTEEEEEE
T ss_pred             CCCcccccCCCHHHHHHHHHHHHhcccCCCccchhhhhhhhccccccccCCcc-cccccCCCCEEEEEEcC-CCeEEEEE
Confidence            55543  5688888777666543211    12223334444433211100100 0111 125677776643 36788999


Q ss_pred             CCCCCEe
Q 021080           74 PLRDLWI   80 (317)
Q Consensus        74 ~~~~~W~   80 (317)
                      ..+++-.
T Consensus       166 ~~t~~~~  172 (543)
T 1nir_A          166 GDSKKIV  172 (543)
T ss_dssp             TTTCCEE
T ss_pred             CCCceEE
Confidence            9888754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=90.98  E-value=4.5  Score=35.05  Aligned_cols=61  Identities=8%  Similarity=-0.061  Sum_probs=33.1

Q ss_pred             EEEEEecCceeEEEEeCCCCcEE-eccCCccCCcE--EEE---cCeEEEEeC--cEEEEecCCceEEEe
Q 021080          182 KVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQGPM--AIV---HDSVYLMSH--GLIIKQHRDVRKVVA  242 (317)
Q Consensus       182 ~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~~~~~~--~~~---~~~ly~~g~--~~~~~yd~~~W~~v~  242 (317)
                      .+++.|+....+..||..+.+-. .+.........  +..   ++++++.+.  +.+..||..+.+.+.
T Consensus       183 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~  251 (344)
T 4gqb_B          183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL  251 (344)
T ss_dssp             TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE
T ss_pred             CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE
Confidence            46777776677899999877532 22211111111  111   456666654  678888887644333

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=90.76  E-value=3.8  Score=35.73  Aligned_cols=98  Identities=8%  Similarity=-0.011  Sum_probs=50.1

Q ss_pred             EEEEEecCce---eEEEEeCCCCc--EEecc-CCccCCcEEEE---cCeEEEEeC--cEEEEecCCceEEEecccccccc
Q 021080          182 KVHVLHKGLS---TVQVLDHMGLG--WTVED-YGWLQGPMAIV---HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRR  250 (317)
Q Consensus       182 ~lyv~gG~~~---~v~~yd~~~~~--W~~~~-~~~~~~~~~~~---~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r  250 (317)
                      .+++.++...   .+..||..+..  -..+. ...........   ++.+++.++  +.+..||.++.+.+..+......
T Consensus       228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~  307 (416)
T 2pm9_A          228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW  307 (416)
T ss_dssp             TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC
T ss_pred             CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc
Confidence            4666666444   79999998753  11121 11111112222   455555553  78999998775555444321111


Q ss_pred             ccEEEEEE-CC-eEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          251 IGFAMIGM-GD-DIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       251 ~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      . ..+... ++ ++++.|+.+            ..|.+||+.+.
T Consensus       308 v-~~~~~s~~~~~~l~s~~~d------------~~i~iw~~~~~  338 (416)
T 2pm9_A          308 C-FKTKFAPEAPDLFACASFD------------NKIEVQTLQNL  338 (416)
T ss_dssp             C-CCEEECTTCTTEEEECCSS------------SEEEEEESCCC
T ss_pred             e-EEEEECCCCCCEEEEEecC------------CcEEEEEccCC
Confidence            1 122222 34 677777643            24667777665

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=90.71  E-value=2.8  Score=36.37  Aligned_cols=100  Identities=7%  Similarity=-0.063  Sum_probs=51.8

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCc------cCCcEEEE---cCe-EEEEeCcEEEEecCCceEEEeccccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW------LQGPMAIV---HDS-VYLMSHGLIIKQHRDVRKVVASASEFRR  249 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~------~~~~~~~~---~~~-ly~~g~~~~~~yd~~~W~~v~~~~~~~~  249 (317)
                      +++..+.|+....+..||..+..-.......      ........   .+. ++...++.+..||..+.+.+..+.....
T Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  335 (408)
T 4a11_B          256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK  335 (408)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred             CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence            6667777776677999999876532211100      01111111   122 3333457888898877555544432111


Q ss_pred             cccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          250 RIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       250 r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .. ..+... ++++++.|+.++            .|.+||+++.
T Consensus       336 ~v-~~~~~s~~~~~l~s~~~dg------------~i~iw~~~~~  366 (408)
T 4a11_B          336 TV-DCCVFQSNFQELYSGSRDC------------NILAWVPSLY  366 (408)
T ss_dssp             CE-EEEEEETTTTEEEEEETTS------------CEEEEEECC-
T ss_pred             eE-EEEEEcCCCCEEEEECCCC------------eEEEEeCCCC
Confidence            11 222222 567777776432            5677888765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=90.36  E-value=6.7  Score=32.29  Aligned_cols=177  Identities=7%  Similarity=-0.002  Sum_probs=91.0

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe-CCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      ++.+|+... ....+..||+. ++..... ++..  ...-..++.. ++.+|+.....                      
T Consensus        72 ~g~l~v~~~-~~~~v~~~d~~-g~~~~~~-~~~~--~~~~~~i~~~~~g~l~v~~~~~----------------------  124 (300)
T 2qc5_A           72 LGDIWFTEN-GANKIGKLSKK-GGFTEYP-LPQP--DSGPYGITEGLNGDIWFTQLNG----------------------  124 (300)
T ss_dssp             TSCEEEEET-TTTEEEEECTT-SCEEEEE-CSST--TCCEEEEEECSTTCEEEEETTT----------------------
T ss_pred             CCCEEEEec-CCCeEEEECCC-CCeEEec-CCCC--CCCCccceECCCCCEEEEccCC----------------------
Confidence            455666542 23568899988 7765442 2211  1222334433 57788875421                      


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEE--CCEEEEEecCceeEEEEeCCCCcEEeccCCcc
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL  211 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~--~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~  211 (317)
                                    ..+.+||+. .+..... ++.. ......+..  +|++|+.......+.+||+ +++...+.....
T Consensus       125 --------------~~i~~~~~~-g~~~~~~-~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~  186 (300)
T 2qc5_A          125 --------------DRIGKLTAD-GTIYEYD-LPNK-GSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTN  186 (300)
T ss_dssp             --------------TEEEEECTT-SCEEEEE-CSST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred             --------------CeEEEECCC-CCEEEcc-CCCC-CCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCC
Confidence                          234445554 3333221 1111 112233333  5788887654567999999 666655432111


Q ss_pred             ---CCcEEEE-cCeEEEEeC--cEEEEecCCc-eEEEeccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcc
Q 021080          212 ---QGPMAIV-HDSVYLMSH--GLIIKQHRDV-RKVVASASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSD  283 (317)
Q Consensus       212 ---~~~~~~~-~~~ly~~g~--~~~~~yd~~~-W~~v~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~  283 (317)
                         +..++.- ++.+|+...  +.+..|++.. ...... +. ....-.+++.. +|+||+....            .+.
T Consensus       187 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~-~~-~~~~~~~i~~d~~g~l~v~~~~------------~~~  252 (300)
T 2qc5_A          187 AAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDI-PT-PNARPHAITAGKNSEIWFTEWG------------ANQ  252 (300)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEEC-SS-TTCCEEEEEECSTTCEEEEETT------------TTE
T ss_pred             CCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEEC-CC-CCCCceEEEECCCCCEEEeccC------------CCe
Confidence               1122222 578999874  6899999854 554421 21 11112233333 5688886521            135


Q ss_pred             eeEeecC
Q 021080          284 VDVLTVG  290 (317)
Q Consensus       284 v~~yd~~  290 (317)
                      |.+||++
T Consensus       253 i~~~~~~  259 (300)
T 2qc5_A          253 IGRITND  259 (300)
T ss_dssp             EEEECTT
T ss_pred             EEEECCC
Confidence            6777773

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=90.30  E-value=4.4  Score=34.92  Aligned_cols=22  Identities=9%  Similarity=-0.150  Sum_probs=15.4

Q ss_pred             CCEEEEEecCceeEEEEeCCCC
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGL  201 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~  201 (317)
                      ++++.+.|+....+..||..+.
T Consensus       157 ~~~~l~~~~~d~~i~iwd~~~~  178 (377)
T 3dwl_C          157 NNVLLAAGCADRKAYVLSAYVR  178 (377)
T ss_dssp             TSSEEEEEESSSCEEEEEECCS
T ss_pred             CCCEEEEEeCCCEEEEEEEEec
Confidence            5667777775667888887543

>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}

Probab=90.17  E-value=6.7  Score=32.02  Aligned_cols=116  Identities=10%  Similarity=0.060  Sum_probs=63.6

Q ss_pred             CCceeeCCCCCc--cCCCceEEEE-ECCEEEEEecCceeEEEEeCCC----CcEEe----ccCCcc---------CCcEE
Q 021080          157 KDVWVPIPDLHR--THNSACTGVV-IGGKVHVLHKGLSTVQVLDHMG----LGWTV----EDYGWL---------QGPMA  216 (317)
Q Consensus       157 t~~W~~~~~~p~--~~r~~~~~~~-~~g~lyv~gG~~~~v~~yd~~~----~~W~~----~~~~~~---------~~~~~  216 (317)
                      +..|..++.-+-  . ...+ +.. .+|++|++-|  +..++||..+    +....    +...++         ...+|
T Consensus        46 ~~~Wp~LP~~~f~~~-~iDA-a~~~~~g~~~fFkg--~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA  121 (225)
T 3oyo_A           46 SSGFPSLAGTPFAEP-GIDC-SFHTEASEAYVFSG--NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSA  121 (225)
T ss_dssp             HHHCGGGTTSTTTTT-CCSE-EEECSTTEEEEEET--TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEE
T ss_pred             hhhcccCCCccCCCC-CEeE-EEEcCCCeEEEEcC--CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceE
Confidence            456777764322  2 2222 222 5899999976  5688886532    21111    111111         23344


Q ss_pred             EE---cCeEEEEeCcEEEEecCCc--eE----EEe-ccccc-----cccccEEEEE-ECCeEEEEeCcccCCCCceeccc
Q 021080          217 IV---HDSVYLMSHGLIIKQHRDV--RK----VVA-SASEF-----RRRIGFAMIG-MGDDIYVIGGVIGPDRWNWDIKP  280 (317)
Q Consensus       217 ~~---~~~ly~~g~~~~~~yd~~~--W~----~v~-~~~~~-----~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~  280 (317)
                      ..   ++++|++.|+..+.||...  -.    .+. ..|..     ......++.. .++++|++-|             
T Consensus       122 ~~~~~~gk~yfFkG~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------------  188 (225)
T 3oyo_A          122 FRSTKGKEVYLFKGNKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------------  188 (225)
T ss_dssp             EECSSTTEEEEEETTEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------------
T ss_pred             EEECCCCcEEEEeCCeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------------
Confidence            33   6899999999999999544  11    111 22211     1223333332 3789999977             


Q ss_pred             CcceeEeecC
Q 021080          281 MSDVDVLTVG  290 (317)
Q Consensus       281 ~~~v~~yd~~  290 (317)
                       +..|.||..
T Consensus       189 -~~ywr~d~~  197 (225)
T 3oyo_A          189 -QNYVRIDFT  197 (225)
T ss_dssp             -TEEEEEECC
T ss_pred             -CEEEEEeCC
Confidence             256788887

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=90.06  E-value=7.1  Score=32.13  Aligned_cols=165  Identities=8%  Similarity=0.089  Sum_probs=85.6

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe-CCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      ++.+|+... ....+..||+. ++...+. ++..  ...-.+++.. ++.+|+.....                      
T Consensus        30 ~g~l~v~~~-~~~~v~~~~~~-~~~~~~~-~~~~--~~~~~~i~~~~~g~l~v~~~~~----------------------   82 (300)
T 2qc5_A           30 DGKVWFTQH-KANKISSLDQS-GRIKEFE-VPTP--DAKVMCLIVSSLGDIWFTENGA----------------------   82 (300)
T ss_dssp             TSCEEEEET-TTTEEEEECTT-SCEEEEE-CSST--TCCEEEEEECTTSCEEEEETTT----------------------
T ss_pred             CCCEEEEcC-CCCeEEEECCC-CceEEEE-CCCC--CCcceeEEECCCCCEEEEecCC----------------------
Confidence            456777543 23678899988 7766542 2211  0122333332 46788875421                      


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEE--CCEEEEEecCceeEEEEeCCCCcEEeccCC--
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLGWTVEDYG--  209 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~--~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~--  209 (317)
                                    ..+.+||+. +++.... ++.. ......+..  +|++|+.......+..||+. ++.......  
T Consensus        83 --------------~~v~~~d~~-g~~~~~~-~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~  144 (300)
T 2qc5_A           83 --------------NKIGKLSKK-GGFTEYP-LPQP-DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNK  144 (300)
T ss_dssp             --------------TEEEEECTT-SCEEEEE-CSST-TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSST
T ss_pred             --------------CeEEEECCC-CCeEEec-CCCC-CCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCC
Confidence                          234555655 4444321 1111 112223333  68899886545679999998 665543211  


Q ss_pred             cc-CCcEEE-EcCeEEEEe--CcEEEEecCCc-eEEEeccccccccccEEEEEE-CCeEEEEe
Q 021080          210 WL-QGPMAI-VHDSVYLMS--HGLIIKQHRDV-RKVVASASEFRRRIGFAMIGM-GDDIYVIG  266 (317)
Q Consensus       210 ~~-~~~~~~-~~~~ly~~g--~~~~~~yd~~~-W~~v~~~~~~~~r~~~~~~~~-~~~lyv~G  266 (317)
                      .. +..++. -++++|+..  .+.++.|++.. ...+. .+. ......+++.. ++.||+..
T Consensus       145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~-~~~-~~~~~~~i~~d~~g~l~v~~  205 (300)
T 2qc5_A          145 GSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYP-LPT-NAAAPVGITSGNDGALWFVE  205 (300)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEE-CSS-TTCCEEEEEECTTSSEEEEE
T ss_pred             CCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEee-CCC-CCCCcceEEECCCCCEEEEc
Confidence            11 122222 257899887  47899999854 55442 221 11122233333 56788764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=90.05  E-value=2.9  Score=34.93  Aligned_cols=84  Identities=11%  Similarity=0.159  Sum_probs=48.6

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEE--ECCEEEEEecCceeEEEEeCCCCcEEeccCCcc------CCcEEE-Ec
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVV--IGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL------QGPMAI-VH  219 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~--~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~------~~~~~~-~~  219 (317)
                      .+.+||+.++ .+.+.. +..   ...++.  -+|++|+.......+..||+.+++...+.....      ...++. -+
T Consensus        51 ~i~~~~~~~~-~~~~~~-~~~---~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~  125 (296)
T 3e5z_A           51 RTWAWSDDGQ-LSPEMH-PSH---HQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD  125 (296)
T ss_dssp             EEEEEETTSC-EEEEES-SCS---SEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT
T ss_pred             EEEEEECCCC-eEEEEC-CCC---CcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC
Confidence            4556666665 433321 111   222333  368888876545679999998888765532211      112332 26


Q ss_pred             CeEEEEe-------------------CcEEEEecCCc
Q 021080          220 DSVYLMS-------------------HGLIIKQHRDV  237 (317)
Q Consensus       220 ~~ly~~g-------------------~~~~~~yd~~~  237 (317)
                      |++|+.+                   .+.++.++++.
T Consensus       126 G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g  162 (296)
T 3e5z_A          126 GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG  162 (296)
T ss_dssp             SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS
T ss_pred             CCEEEECCccccccccccccccccCCCcEEEEECCCC
Confidence            7899863                   24899998864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=90.04  E-value=4.5  Score=36.08  Aligned_cols=89  Identities=9%  Similarity=-0.005  Sum_probs=43.3

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceE-EEEECCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE--c-CeEEE
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACT-GVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV--H-DSVYL  224 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~-~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~--~-~~ly~  224 (317)
                      .+.+||.+++.-..+...........+ ...-++++++.|+....+..||.....-..+.........+..  + +.+++
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLA  267 (435)
T ss_dssp             CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred             EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEE
Confidence            455667666654443222111011112 2234677888888677899999876542222211111111222  2 33554


Q ss_pred             EeC--cEEEEecCCc
Q 021080          225 MSH--GLIIKQHRDV  237 (317)
Q Consensus       225 ~g~--~~~~~yd~~~  237 (317)
                      .++  +.+..||...
T Consensus       268 s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          268 TASVDQTVKIWDLRQ  282 (435)
T ss_dssp             EEETTSBCCEEETTT
T ss_pred             EecCcceeeEEeccc
Confidence            443  5677777654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=90.00  E-value=8.8  Score=33.13  Aligned_cols=133  Identities=9%  Similarity=-0.081  Sum_probs=67.6

Q ss_pred             CCceEEEeCCCCCEeecCCCCccccccCC-eeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCC
Q 021080           66 ENLWQLYDPLRDLWITLPVLPSKIRHLAH-FGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTS  142 (317)
Q Consensus        66 ~~~~~~yd~~~~~W~~~~~~p~~~~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~  142 (317)
                      ...+..||..+.+..........   ... .++...  ++.+++.|+.+                               
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~d-------------------------------  140 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTSFIQGMGP---GDAITGMKFNQFNTNQLFVSSIR-------------------------------  140 (383)
T ss_dssp             TSCEEEEETTSTTCEEEECCCST---TCBEEEEEEETTEEEEEEEEETT-------------------------------
T ss_pred             CCeEEEEeCCCcccceeeecCCc---CCceeEEEeCCCCCCEEEEEeCC-------------------------------
Confidence            35788999988776654333211   122 233333  34666666542                               


Q ss_pred             CcCCCceeEEeeCCCCceeeCCCCCcc-CCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE--c
Q 021080          143 CRKSISQAEMYDPEKDVWVPIPDLHRT-HNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV--H  219 (317)
Q Consensus       143 ~~~~~~~~~~yd~~t~~W~~~~~~p~~-~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~--~  219 (317)
                           ..+.+||..++....+...... ......+..-++++.+.|+....+..||+....-..+.........+..  +
T Consensus       141 -----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          141 -----GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             -----TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSS
T ss_pred             -----CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCC
Confidence                 3455667666555444322211 0111222233567777777677899999865544433322111111222  3


Q ss_pred             Ce-EEEEeC--cEEEEecCCc
Q 021080          220 DS-VYLMSH--GLIIKQHRDV  237 (317)
Q Consensus       220 ~~-ly~~g~--~~~~~yd~~~  237 (317)
                      +. +++.++  +.+..||..+
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGG
T ss_pred             CCCEEEEEeCCCEEEEEeCCC
Confidence            33 555543  6788888654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=89.86  E-value=4.7  Score=39.00  Aligned_cols=86  Identities=10%  Similarity=0.032  Sum_probs=50.1

Q ss_pred             CCEEEEEec-CceeEEEEeCCCCcEEecc-C-CccCCcEEEE--cCeEEEEeC--cEEEEecCCc--eEEEecccccccc
Q 021080          180 GGKVHVLHK-GLSTVQVLDHMGLGWTVED-Y-GWLQGPMAIV--HDSVYLMSH--GLIIKQHRDV--RKVVASASEFRRR  250 (317)
Q Consensus       180 ~g~lyv~gG-~~~~v~~yd~~~~~W~~~~-~-~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~--W~~v~~~~~~~~r  250 (317)
                      ++.||+..- ....|+++++....-..+. . +..+..+++-  +++||+.+.  ..|..++.+.  -+.+..... ...
T Consensus       507 ~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~-~~~  585 (699)
T 1n7d_A          507 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK-RLA  585 (699)
T ss_dssp             SSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS-SCS
T ss_pred             CCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC-cCC
Confidence            678888753 2357888887544332221 1 1113344442  579999986  6899998765  334332211 112


Q ss_pred             ccEEEEEECCeEEEEe
Q 021080          251 IGFAMIGMGDDIYVIG  266 (317)
Q Consensus       251 ~~~~~~~~~~~lyv~G  266 (317)
                      ...+++..+++||+.-
T Consensus       586 ~P~glavd~~~lywtd  601 (699)
T 1n7d_A          586 HPFSLAVFEDKVFWTD  601 (699)
T ss_dssp             SCCCCEEETTEEEEEC
T ss_pred             CceEeEEECCEEEEEe
Confidence            3345667788999886

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=89.75  E-value=2.6  Score=36.69  Aligned_cols=98  Identities=6%  Similarity=-0.098  Sum_probs=48.9

Q ss_pred             EEEEEecCceeEEEEeCCCCcEEeccCCcc-CC--cEEEE---cCeEEEEeC--cEEEEecCCceEEEeccccccccccE
Q 021080          182 KVHVLHKGLSTVQVLDHMGLGWTVEDYGWL-QG--PMAIV---HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGF  253 (317)
Q Consensus       182 ~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~-~~--~~~~~---~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~  253 (317)
                      .+++.++....+..||..+.+-...-.... ..  ..+..   ++.+++.+.  +.+..||....+.+..+.. ....-.
T Consensus       195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~-~~~~v~  273 (357)
T 4g56_B          195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV-HSQNIT  273 (357)
T ss_dssp             SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC-CSSCEE
T ss_pred             ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec-cceeEE
Confidence            466677656678899988765332211111 11  11222   355666654  6788888776332222221 011111


Q ss_pred             EEEE--ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          254 AMIG--MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       254 ~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .++.  .++++++.|+.+            ..|.+||.+++
T Consensus       274 ~l~~sp~~~~~lasgs~D------------~~i~iwd~~~~  302 (357)
T 4g56_B          274 GLAYSYHSSPFLASISED------------CTVAVLDADFS  302 (357)
T ss_dssp             EEEECSSSSCCEEEEETT------------SCEEEECTTSC
T ss_pred             EEEEcCCCCCEEEEEeCC------------CEEEEEECCCC
Confidence            2222  133555555532            25778888776

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=89.75  E-value=2.8  Score=40.71  Aligned_cols=89  Identities=11%  Similarity=0.088  Sum_probs=51.4

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEE--C--CEEEEEecCceeEEEEeCCCCcEEeccCCcc-CCcE--EEE--
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--G--GKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL-QGPM--AIV--  218 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~--~--g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~-~~~~--~~~--  218 (317)
                      ..+.+||..++++..+..+... ...-..+.+  +  +.+.+.|+....+..||..++.|..+..... ...+  +..  
T Consensus        31 g~I~vwd~~~~~~~~~~~l~~h-~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp  109 (753)
T 3jro_A           31 KTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP  109 (753)
T ss_dssp             TEEEEEEEETTEEEEEEEECCC-SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC
T ss_pred             CcEEEEecCCCCCccceeccCC-cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC
Confidence            3566777776666655444332 222333333  3  6777777766789999999988765543332 1111  222  


Q ss_pred             c--CeEEEEeC--cEEEEecCCc
Q 021080          219 H--DSVYLMSH--GLIIKQHRDV  237 (317)
Q Consensus       219 ~--~~ly~~g~--~~~~~yd~~~  237 (317)
                      +  +.+++.++  +.+..||...
T Consensus       110 ~~~~~~l~sgs~dg~I~vwdl~~  132 (753)
T 3jro_A          110 HEYGPLLLVASSDGKVSVVEFKE  132 (753)
T ss_dssp             GGGCSEEEEEETTSEEEEEECCS
T ss_pred             CCCCCEEEEEeCCCcEEEEEeec
Confidence            2  55555554  6788887654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=89.56  E-value=3.4  Score=42.35  Aligned_cols=130  Identities=9%  Similarity=-0.014  Sum_probs=64.6

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEe-ccCCccC-CcEEE-EcCeEEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTV-EDYGWLQ-GPMAI-VHDSVYL  224 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~-~~~~~~~-~~~~~-~~~~ly~  224 (317)
                      ..+.+||..+++...+......   -.......+..++.++....+..||..+++-.. +...... ..++. -++++++
T Consensus      1025 g~i~vwd~~~~~~~~~~~~~~~---v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 1101 (1249)
T 3sfz_A         1025 SVIQVWNWQTGDYVFLQAHQET---VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFS 1101 (1249)
T ss_dssp             SBEEEEETTTTEEECCBCCSSC---EEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCE
T ss_pred             CEEEEEECCCCceEEEecCCCc---EEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEE
Confidence            3567788877776544322211   222333333344556656789999998765221 1111111 12222 2445555


Q ss_pred             EeC--cEEEEecCCceEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          225 MSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       225 ~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .++  +.+..||....+.+..+.............-++++++.|+.++            .|.+||+.++
T Consensus      1102 s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg------------~i~vwd~~~~ 1159 (1249)
T 3sfz_A         1102 STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG------------EIRIWNVSDG 1159 (1249)
T ss_dssp             EECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTS------------CCCEEESSSS
T ss_pred             EEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCC------------EEEEEECCCC
Confidence            544  5677787766443333331011111112223677777776432            4678888876

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=89.51  E-value=9.6  Score=32.86  Aligned_cols=89  Identities=8%  Similarity=-0.129  Sum_probs=44.9

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEec-cCCccCCc--EEEE--cCeEEEEeC--cEEEEecCCceEEEecccccccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVE-DYGWLQGP--MAIV--HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIG  252 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~-~~~~~~~~--~~~~--~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~  252 (317)
                      ++..++.|+....+..||+.++.-... ........  .+..  ++++.+.++  +.+..||..+.+.+..+..-.... 
T Consensus       251 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v-  329 (354)
T 2pbi_B          251 SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV-  329 (354)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE-
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcE-
Confidence            567777777667789999887642221 11111111  1222  455555553  678888876644443332101111 


Q ss_pred             EEEEE-ECCeEEEEeCcc
Q 021080          253 FAMIG-MGDDIYVIGGVI  269 (317)
Q Consensus       253 ~~~~~-~~~~lyv~GG~~  269 (317)
                      ..+.. -+++.++.|+.+
T Consensus       330 ~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          330 STLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             EEEEECTTSSCEEEEETT
T ss_pred             EEEEECCCCCEEEEEcCC
Confidence            12222 256666666643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=89.51  E-value=11  Score=33.36  Aligned_cols=84  Identities=20%  Similarity=0.245  Sum_probs=51.6

Q ss_pred             CCEEEEEecCc-eeEEEEeCCCCcEEec-cCCcc-CCcEEE--EcCeEEEEeC--cEEEEecCCc--eEEEecccccccc
Q 021080          180 GGKVHVLHKGL-STVQVLDHMGLGWTVE-DYGWL-QGPMAI--VHDSVYLMSH--GLIIKQHRDV--RKVVASASEFRRR  250 (317)
Q Consensus       180 ~g~lyv~gG~~-~~v~~yd~~~~~W~~~-~~~~~-~~~~~~--~~~~ly~~g~--~~~~~yd~~~--W~~v~~~~~~~~r  250 (317)
                      ++.||+.--.. ..|+++++....-..+ ..... +..++.  .+++||+.+.  +.|+.++.+.  -+.+....   ..
T Consensus       213 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~---~~  289 (386)
T 3v65_B          213 EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG---LP  289 (386)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS---CS
T ss_pred             CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC---CC
Confidence            68999986533 7899999875543332 22111 233444  3789999986  6899998764  23232211   11


Q ss_pred             ccEEEEEECCeEEEEe
Q 021080          251 IGFAMIGMGDDIYVIG  266 (317)
Q Consensus       251 ~~~~~~~~~~~lyv~G  266 (317)
                      .-.+++..++.||+..
T Consensus       290 ~P~giav~~~~ly~td  305 (386)
T 3v65_B          290 HPFAITVFEDSLYWTD  305 (386)
T ss_dssp             SEEEEEEETTEEEEEE
T ss_pred             CceEEEEECCEEEEee
Confidence            2345666889999885

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=89.45  E-value=16  Score=35.32  Aligned_cols=141  Identities=8%  Similarity=-0.044  Sum_probs=76.2

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEec
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD  134 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d  134 (317)
                      ++.|+|...   .-+..||+.++++........    ..-.++...++.|+|...                         
T Consensus        73 ~g~lWigT~---~Gl~~yd~~~~~f~~~~~~~~----~~i~~i~~~~g~lWigt~-------------------------  120 (758)
T 3ott_A           73 NTYLYMGTD---NGILVYNYRADRYEQPETDFP----TDVRTMALQGDTLWLGAL-------------------------  120 (758)
T ss_dssp             TTEEEEEET---TEEEEEETTTTEECCCSCCCC----SCEEEEEEETTEEEEEET-------------------------
T ss_pred             CCcEEEEeC---CCeEEEeCCCCEEECcccCCC----ceEEEEEecCCcEEEEcC-------------------------
Confidence            456776542   467899999987765211110    111223344677776432                         


Q ss_pred             ccCCCCCCCcCCCceeEEeeCCCCceeeCC----CCCccCCCceEEEEE--CCEEEEEecCceeEEEEeCCCCcEEeccC
Q 021080          135 PVTRGFTSCRKSISQAEMYDPEKDVWVPIP----DLHRTHNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLGWTVEDY  208 (317)
Q Consensus       135 ~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~----~~p~~~r~~~~~~~~--~g~lyv~gG~~~~v~~yd~~~~~W~~~~~  208 (317)
                                   ..+.+||+.+++.+...    .++..   ....+..  +|.|++..  ..-+.+||+.++++.....
T Consensus       121 -------------~Gl~~~~~~~~~~~~~~~~~~~l~~~---~i~~i~~d~~g~lWigt--~~Gl~~~~~~~~~~~~~~~  182 (758)
T 3ott_A          121 -------------NGLYTYQLQSRKLTSFDTRRNGLPNN---TIYSIIRTKDNQIYVGT--YNGLCRYIPSNGKFEGIPL  182 (758)
T ss_dssp             -------------TEEEEEETTTCCEEEECHHHHCCSCS---CEEEEEECTTCCEEEEE--TTEEEEEETTTTEEEEECC
T ss_pred             -------------CcceeEeCCCCeEEEeccCCCCcCCC---eEEEEEEcCCCCEEEEe--CCCHhhCccCCCceEEecC
Confidence                         23556777666665542    12222   1122222  67788753  2458899999988876542


Q ss_pred             Ccc----CCcE---EEE--cCeEEEEeCcEEEEecCCc--eEEEeccc
Q 021080          209 GWL----QGPM---AIV--HDSVYLMSHGLIIKQHRDV--RKVVASAS  245 (317)
Q Consensus       209 ~~~----~~~~---~~~--~~~ly~~g~~~~~~yd~~~--W~~v~~~~  245 (317)
                      ...    ...+   ..-  ++.|++...+.++.|++++  ++....++
T Consensus       183 ~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~  230 (758)
T 3ott_A          183 PVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFH  230 (758)
T ss_dssp             CCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             CCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCC
Confidence            211    1111   111  2347776556789999765  66554433

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=89.36  E-value=14  Score=35.65  Aligned_cols=139  Identities=12%  Similarity=0.051  Sum_probs=73.9

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEE-eCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVS-TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      ++.|+++++.. .-+.+||+.++++..+..-... ....-.++.. -++.|++...                        
T Consensus       482 ~g~lWi~~~t~-~Gl~~~d~~~~~~~~~~~~~~~-~~~~~~~i~~d~~g~lWigt~------------------------  535 (758)
T 3ott_A          482 EGNVWVLLYNN-KGIDKINPRTREVTKLFADELT-GEKSPNYLLCDEDGLLWVGFH------------------------  535 (758)
T ss_dssp             TSCEEEEETTC-SSEEEEETTTTEEEEECTTTSC-GGGCEEEEEECTTSCEEEEET------------------------
T ss_pred             CCCEEEEccCC-CCcEEEeCCCCceEEecCCCcC-CCcccceEEECCCCCEEEEec------------------------
Confidence            45577654432 5688999999988876321110 0011122222 2456775431                        


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeCC--CCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCcc
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIP--DLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL  211 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~  211 (317)
                                    .-+.+||+.+++++...  .++.. . -.+.+.-+|.|++.+  ..-+.+||+.+.+.........
T Consensus       536 --------------~Gl~~~~~~~~~~~~~~~~gl~~~-~-i~~i~~~~g~lWi~t--~~Gl~~~~~~~~~~~~~~~~~~  597 (758)
T 3ott_A          536 --------------GGVMRINPKDESQQSISFGSFSNN-E-ILSMTCVKNSIWVST--TNGLWIIDRKTMDARQQNMTNK  597 (758)
T ss_dssp             --------------TEEEEECC--CCCCBCCCCC---C-C-EEEEEEETTEEEEEE--SSCEEEEETTTCCEEEC--CCC
T ss_pred             --------------CceEEEecCCCceEEecccCCCcc-c-eEEEEECCCCEEEEC--CCCeEEEcCCCceeEEecCCCC
Confidence                          12456666666665542  33332 1 223344588888874  3568999999988765431111


Q ss_pred             CCcEEE-E--cCeEEEEeCcEEEEecCCc
Q 021080          212 QGPMAI-V--HDSVYLMSHGLIIKQHRDV  237 (317)
Q Consensus       212 ~~~~~~-~--~~~ly~~g~~~~~~yd~~~  237 (317)
                      ....+. .  +|.||+-+.+.+..|+|+.
T Consensus       598 ~~~~~~~~~~~G~l~fG~~~Gl~~f~p~~  626 (758)
T 3ott_A          598 RFTSLLFDPKEDCVYLGGADGFGISHSNL  626 (758)
T ss_dssp             CCSEEEEETTTTEEEEECBSEEEEEEC--
T ss_pred             ceeeeEEECCCCcEEEecCCceEEEChhh
Confidence            112222 2  6788887778888888865

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=89.24  E-value=8.9  Score=32.13  Aligned_cols=56  Identities=5%  Similarity=-0.092  Sum_probs=30.6

Q ss_pred             CEEEEEecCceeEEEEeCCC-CcEEecc-----CCcc-CCcEEEE--cC-eEEEEeC--cEEEEecCC
Q 021080          181 GKVHVLHKGLSTVQVLDHMG-LGWTVED-----YGWL-QGPMAIV--HD-SVYLMSH--GLIIKQHRD  236 (317)
Q Consensus       181 g~lyv~gG~~~~v~~yd~~~-~~W~~~~-----~~~~-~~~~~~~--~~-~ly~~g~--~~~~~yd~~  236 (317)
                      ..+|+.+.....+..||..+ ++.....     .... .......  ++ .+|+.+.  +.+..|+.+
T Consensus       141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            35777663456789999887 6554322     1101 1111222  34 4777763  677777763

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=89.19  E-value=7.3  Score=31.03  Aligned_cols=98  Identities=12%  Similarity=0.046  Sum_probs=55.9

Q ss_pred             ECCEEEEEecCceeEEEEeCCCCcE---EeccCCc---c--CCcEEEE---cCeEEEEeCcEEEEecCCceEEEeccccc
Q 021080          179 IGGKVHVLHKGLSTVQVLDHMGLGW---TVEDYGW---L--QGPMAIV---HDSVYLMSHGLIIKQHRDVRKVVASASEF  247 (317)
Q Consensus       179 ~~g~lyv~gG~~~~v~~yd~~~~~W---~~~~~~~---~--~~~~~~~---~~~ly~~g~~~~~~yd~~~W~~v~~~~~~  247 (317)
                      .+|++|++-|  +..++||..+...   ..+....   +  ...+|..   ++++|++.|+..+.||..+-+....-|..
T Consensus        60 ~~g~~yfFkg--~~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG~~yw~yd~~~~~v~~gyPk~  137 (196)
T 3c7x_A           60 KDGKFVFFKG--DKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELRAVDSEYPKN  137 (196)
T ss_dssp             TTSCEEEEET--TEEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEETTEEEEEETTTTEECTTCSEE
T ss_pred             CCCcEEEecC--CEEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEECCEEEEEeCCcccccCCCCcc
Confidence            4788999966  4578887542110   1122211   1  2344442   58999999999999997653222221211


Q ss_pred             -------cccccEEEEEECC-eEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          248 -------RRRIGFAMIGMGD-DIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       248 -------~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                             ......++...++ ++|++-|              +..+.||..+.
T Consensus       138 i~~~~gip~~idaAf~~~~~~~~YfFkg--------------~~y~r~d~~~~  176 (196)
T 3c7x_A          138 IKVWEGIPESPRGSFMGSDEVFTYFYKG--------------NKYWKFNNQKL  176 (196)
T ss_dssp             GGGSBTCCSSCSEEEECTTSSEEEEEET--------------TEEEEEETTTT
T ss_pred             HHHCCCcCCCcceeEEecCCCEEEEEEC--------------CEEEEEECCcc
Confidence                   1122233333344 8999866              25678888776

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=89.17  E-value=7.6  Score=31.24  Aligned_cols=57  Identities=9%  Similarity=0.002  Sum_probs=37.9

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEe-----ccCCc----cCC-cEEEEcCeEEEEeCcEEEEecCCce
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTV-----EDYGW----LQG-PMAIVHDSVYLMSHGLIIKQHRDVR  238 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~-----~~~~~----~~~-~~~~~~~~ly~~g~~~~~~yd~~~W  238 (317)
                      +|++|++-|  +..++||..+++-..     +...+    ... ++...++.+|++.|+..+.||..+=
T Consensus       127 ~gk~yfFkG--~~ywr~d~~~~~~d~gyPr~i~~~~~Gip~~iDaAf~~~g~~YfFkg~~y~rf~~~~~  193 (207)
T 1pex_A          127 TGKTLLFSG--NQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNGPIQFEYSIWSN  193 (207)
T ss_dssp             TSEEEEEET--TEEEEEETTTTEECSSCCCBHHHHSTTSCSCCSEEEEETTEEEEEETTEEEEEETTTT
T ss_pred             CCEEEEEeC--CEEEEEeCcCccccCCCCccHHHcCCCCCCCccEEEEcCCcEEEEECCEEEEEeCCcc
Confidence            589999976  568999987653210     00011    122 3334588999999999999998763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=89.08  E-value=9.8  Score=32.39  Aligned_cols=107  Identities=17%  Similarity=0.066  Sum_probs=62.0

Q ss_pred             CCEEEEEec-CceeEEEEeCCCCcEEeccCC----------cc-CCcEEEE-c-CeEEEEeC--cEEEEecCCc--eEEE
Q 021080          180 GGKVHVLHK-GLSTVQVLDHMGLGWTVEDYG----------WL-QGPMAIV-H-DSVYLMSH--GLIIKQHRDV--RKVV  241 (317)
Q Consensus       180 ~g~lyv~gG-~~~~v~~yd~~~~~W~~~~~~----------~~-~~~~~~~-~-~~ly~~g~--~~~~~yd~~~--W~~v  241 (317)
                      +|.||+..+ ....|..||+....-..+...          .. +..++.- + +.||+.+.  +.+..|++++  ....
T Consensus       154 ~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~  233 (329)
T 3fvz_A          154 TGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE  233 (329)
T ss_dssp             TCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence            689999986 578899999665543333210          00 2233333 3 79999985  7899999874  3222


Q ss_pred             eccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          242 ASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       242 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      -..+. ......+++...+.+|...|......     .....+.+||+.++
T Consensus       234 ~~~~~-~~~~~~~~~~~pg~~~~~~g~~~v~~-----~~~~~v~~~~~~~g  278 (329)
T 3fvz_A          234 IKHAS-FGRNVFAISYIPGFLFAVNGKPYFGD-----QEPVQGFVMNFSSG  278 (329)
T ss_dssp             ECCTT-TTTCEEEEEEETTEEEEEECCCCTTC-----SCCCCEEEEETTTC
T ss_pred             Eeccc-cCCCcceeeecCCEEEEeCCCEEecc-----CCCcEEEEEEcCCC
Confidence            11121 11222234444577787777533221     12347888998877

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=88.86  E-value=12  Score=33.04  Aligned_cols=112  Identities=14%  Similarity=0.112  Sum_probs=60.5

Q ss_pred             ceeEEeeCCCCceeeCC--CCCccCCCceEEEE--ECCEEEEEecCceeEEEEeCCCCcEEeccC-Ccc-CCcEEEE--c
Q 021080          148 SQAEMYDPEKDVWVPIP--DLHRTHNSACTGVV--IGGKVHVLHKGLSTVQVLDHMGLGWTVEDY-GWL-QGPMAIV--H  219 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~--~~p~~~r~~~~~~~--~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~-~~~-~~~~~~~--~  219 (317)
                      ..+.++++.....+.+.  .+..+ .   ..++  .++.||+.-.....|+++++....-..+.. ... +..+++-  +
T Consensus       138 ~~I~r~~~~g~~~~~~~~~~~~~p-~---glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~  213 (386)
T 3v65_B          138 DRILRANLNGSNVEEVVSTGLESP-G---GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME  213 (386)
T ss_dssp             TEEEEEETTSCCEEEEECSSCSCC-C---CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTT
T ss_pred             CcEEEEecCCCCcEEEEeCCCCCc-c---EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCC
Confidence            34556666655444432  22223 1   1233  378999997766789999987654333221 111 2333433  6


Q ss_pred             CeEEEEeC---cEEEEecCCc--eEEEeccccccccccEEEEE--ECCeEEEEe
Q 021080          220 DSVYLMSH---GLIIKQHRDV--RKVVASASEFRRRIGFAMIG--MGDDIYVIG  266 (317)
Q Consensus       220 ~~ly~~g~---~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~--~~~~lyv~G  266 (317)
                      +.||+.+.   ..+++++.+.  -+.+..-.   .....+++.  .+++||+.-
T Consensus       214 g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD  264 (386)
T 3v65_B          214 GTIYWTDWGNTPRIEASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVD  264 (386)
T ss_dssp             TEEEEEECSSSCEEEEEETTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEE
T ss_pred             CeEEEeccCCCCEEEEEeCCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEE
Confidence            78999874   5788888765  22222111   112233444  367888874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.84  E-value=11  Score=32.51  Aligned_cols=93  Identities=9%  Similarity=0.042  Sum_probs=49.4

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEE-E-EECCE-EEEEec--Cc--eeEEEEeCCCCcEEeccCCccCCcEEEE-c
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTG-V-VIGGK-VHVLHK--GL--STVQVLDHMGLGWTVEDYGWLQGPMAIV-H  219 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~-~-~~~g~-lyv~gG--~~--~~v~~yd~~~~~W~~~~~~~~~~~~~~~-~  219 (317)
                      ..++++|..+.+++.+.. ..+ ...... + .-+|+ |++...  ..  ..+..+|+.+++...+...........- +
T Consensus       216 ~~l~~~d~~~~~~~~l~~-~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~d  293 (396)
T 3c5m_A          216 ARMWLVNEDGSNVRKIKE-HAE-GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFD  293 (396)
T ss_dssp             CCCEEEETTSCCCEESSC-CCT-TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSS
T ss_pred             ceEEEEECCCCceeEeec-cCC-CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCC
Confidence            467778877777776654 211 111111 2 22554 444432  22  4499999988876655432221122223 6


Q ss_pred             CeEEEEe------------------CcEEEEecCCc--eEEEe
Q 021080          220 DSVYLMS------------------HGLIIKQHRDV--RKVVA  242 (317)
Q Consensus       220 ~~ly~~g------------------~~~~~~yd~~~--W~~v~  242 (317)
                      ++++++.                  ...++.+|.+.  .+.+.
T Consensus       294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  336 (396)
T 3c5m_A          294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC  336 (396)
T ss_dssp             SSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEE
T ss_pred             CceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEcc
Confidence            6766652                  25788888764  54444

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=88.83  E-value=8.9  Score=31.61  Aligned_cols=102  Identities=9%  Similarity=0.028  Sum_probs=48.4

Q ss_pred             EEEECCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE--cCeEEEEeC--cEEEEecCCc-eEEEecccccccc
Q 021080          176 GVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV--HDSVYLMSH--GLIIKQHRDV-RKVVASASEFRRR  250 (317)
Q Consensus       176 ~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~-W~~v~~~~~~~~r  250 (317)
                      .+..++.+++.|+....+..||.................++..  ++..++.++  +.+..||..+ -..+....  ...
T Consensus       109 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~  186 (313)
T 3odt_A          109 SLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIH--NDV  186 (313)
T ss_dssp             EEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSC--SSC
T ss_pred             EEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccC--ccc
Confidence            3444666667777667788888333333222211111111111  344444443  6788888655 33332212  111


Q ss_pred             ccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          251 IGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       251 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .......-+++ ++.|+.+            ..+.+||+.+.
T Consensus       187 i~~~~~~~~~~-~~~~~~d------------g~i~i~d~~~~  215 (313)
T 3odt_A          187 VRHLAVVDDGH-FISCSND------------GLIKLVDMHTG  215 (313)
T ss_dssp             EEEEEEEETTE-EEEEETT------------SEEEEEETTTC
T ss_pred             EEEEEEcCCCe-EEEccCC------------CeEEEEECCch
Confidence            21222233556 5555422            25778888765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=88.79  E-value=9.6  Score=31.95  Aligned_cols=60  Identities=18%  Similarity=0.243  Sum_probs=37.1

Q ss_pred             ECCEEEEEecCceeEEEEeCCC-CcEEeccCCccCCcEEEE-cCeEEEEeC-cEEEEecCCc---eEEE
Q 021080          179 IGGKVHVLHKGLSTVQVLDHMG-LGWTVEDYGWLQGPMAIV-HDSVYLMSH-GLIIKQHRDV---RKVV  241 (317)
Q Consensus       179 ~~g~lyv~gG~~~~v~~yd~~~-~~W~~~~~~~~~~~~~~~-~~~ly~~g~-~~~~~yd~~~---W~~v  241 (317)
                      -+|.||+..   ..+.+||... ..|............+.. ++.||+... +.++.|+++.   |+.-
T Consensus       186 ~~g~l~v~t---~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~  251 (330)
T 3hxj_A          186 KDGTIYFGS---DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFK  251 (330)
T ss_dssp             TTCCEEEES---SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEEe---CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEee
Confidence            367888764   6799999432 247655332222233333 568998874 7899998754   7654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=88.66  E-value=9.8  Score=31.85  Aligned_cols=100  Identities=10%  Similarity=-0.086  Sum_probs=50.2

Q ss_pred             CCEEEEEecCceeEEEEeCCCCc--EEeccCCccCCcEEEE----cCeEEEEeC--cEEEEecCCceEEEeccccccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQGPMAIV----HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRI  251 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~----~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~  251 (317)
                      ++.+++.|+....+..||..+..  ................    ++.+.+.++  +.+..+|.++.+.+..+..-....
T Consensus       152 ~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v  231 (304)
T 2ynn_A          152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV  231 (304)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCE
Confidence            45677777766778889986543  2111110000111111    334444443  688888887755544443101111


Q ss_pred             cEEEEE-ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          252 GFAMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       252 ~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                       ..++. -++.+++.|+.++            .|.+||.++.
T Consensus       232 -~~~~~~p~~~~l~s~s~Dg------------~i~iWd~~~~  260 (304)
T 2ynn_A          232 -SFAVFHPTLPIIISGSEDG------------TLKIWNSSTY  260 (304)
T ss_dssp             -EEEEECSSSSEEEEEETTS------------CEEEEETTTC
T ss_pred             -EEEEECCCCCEEEEEcCCC------------eEEEEECCCC
Confidence             11222 2456666666432            5677888765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=88.64  E-value=8.6  Score=32.47  Aligned_cols=105  Identities=10%  Similarity=0.037  Sum_probs=58.3

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCcc--CCcEEE-EcCeEEEEeC------cEEEEecCCc--eE-EEeccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL--QGPMAI-VHDSVYLMSH------GLIIKQHRDV--RK-VVASASEF  247 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~-~~~~ly~~g~------~~~~~yd~~~--W~-~v~~~~~~  247 (317)
                      +|+||+.+.....+..||+.+++...+.....  ...++. -++++|+...      +.++.+|++.  -+ .+..... 
T Consensus        55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-  133 (333)
T 2dg1_A           55 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST-  133 (333)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS-
T ss_pred             CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCcc-
Confidence            67899887656789999999888765431111  112222 2678888864      3799999876  33 2221111 


Q ss_pred             cccccEEEEE-ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          248 RRRIGFAMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       248 ~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ..+. ..++. -++++|+........      .....+++||++++
T Consensus       134 ~~~~-~~i~~d~~g~l~v~~~~~~~~------~~~~~l~~~~~~~~  172 (333)
T 2dg1_A          134 AYCI-DDMVFDSKGGFYFTDFRGYST------NPLGGVYYVSPDFR  172 (333)
T ss_dssp             CCCE-EEEEECTTSCEEEEECCCBTT------BCCEEEEEECTTSC
T ss_pred             CCcc-cceEECCCCCEEEEecccccc------CCCceEEEEeCCCC
Confidence            1112 22222 257788764321111      12236777777665

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=88.60  E-value=13  Score=33.04  Aligned_cols=135  Identities=9%  Similarity=0.000  Sum_probs=69.4

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEE-ECCE-EEEEec--CceeEEEEeCCCCcEEeccCCccCCcEEEE--cCe
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVV-IGGK-VHVLHK--GLSTVQVLDHMGLGWTVEDYGWLQGPMAIV--HDS  221 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~-~~g~-lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~--~~~  221 (317)
                      ..+.++|..+++...+...+..   ..+.+. -+|+ |++.+.  ....++.+|+.+++...+............  +++
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~~~---~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~  279 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ  279 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCSSC---EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSS
T ss_pred             cEEEEEECCCCcEEEeecCCCc---ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCC
Confidence            5677888888776655433221   112222 2554 554543  345699999998877665433221111122  444


Q ss_pred             -EEEEeC----cEEEEecCCc--eEEEeccccccccccEEEE-EECCeEEEEeCcccCCCCceecccCcceeEeecCCCC
Q 021080          222 -VYLMSH----GLIIKQHRDV--RKVVASASEFRRRIGFAMI-GMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAER  293 (317)
Q Consensus       222 -ly~~g~----~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  293 (317)
                       |++...    ..++.+|.+.  -+.+....    .....++ .-+|+.+++++....         ...++++|++++ 
T Consensus       280 ~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~----~~~~~~~~spdG~~l~~~~~~~g---------~~~i~~~d~~~~-  345 (415)
T 2hqs_A          280 NLAFTSDQAGRPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---------QQHIAKQDLATG-  345 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTSSCCEECCCSS----SEEEEEEECTTSSEEEEEEECSS---------CEEEEEEETTTC-
T ss_pred             EEEEEECCCCCcEEEEEECCCCCEEEEecCC----CcccCeEECCCCCEEEEEECcCC---------ceEEEEEECCCC-
Confidence             444443    2788888765  23322111    1111222 225555555443211         237889999887 


Q ss_pred             Cceeecc
Q 021080          294 PTWRQVS  300 (317)
Q Consensus       294 ~~W~~~~  300 (317)
                       +...+.
T Consensus       346 -~~~~l~  351 (415)
T 2hqs_A          346 -GVQVLS  351 (415)
T ss_dssp             -CEEECC
T ss_pred             -CEEEec
Confidence             665543

>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A

Probab=88.59  E-value=4.5  Score=33.11  Aligned_cols=56  Identities=13%  Similarity=0.139  Sum_probs=36.1

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEe-----ccCCc---------cCCcEEEE---cCeEEEEeCcEEEEecCCc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTV-----EDYGW---------LQGPMAIV---HDSVYLMSHGLIIKQHRDV  237 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~-----~~~~~---------~~~~~~~~---~~~ly~~g~~~~~~yd~~~  237 (317)
                      ++++|++-|  +..++||..+++-..     +...+         ....+|..   ++++|++-|+..|.||..+
T Consensus       129 ~~k~yfFkG--~~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~~Ywr~d~~~  201 (227)
T 3lp9_A          129 GKEVYLFKG--DQYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDDHYARVKVTP  201 (227)
T ss_dssp             TTEEEEEET--TEEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEETTEEEEEECCS
T ss_pred             CCEEEEEEC--CEEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEECCEEEEEECCc
Confidence            689999977  568999987654211     11011         12334443   4789999999999888654

>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1

Probab=88.57  E-value=4.5  Score=32.93  Aligned_cols=105  Identities=16%  Similarity=0.190  Sum_probs=58.8

Q ss_pred             ECCEEEEEecCceeEEEEeCCCCcE--EeccCCcc----CC-cEEEEcCeEEEEeCcEEEEecCCc-eEEEeccccc---
Q 021080          179 IGGKVHVLHKGLSTVQVLDHMGLGW--TVEDYGWL----QG-PMAIVHDSVYLMSHGLIIKQHRDV-RKVVASASEF---  247 (317)
Q Consensus       179 ~~g~lyv~gG~~~~v~~yd~~~~~W--~~~~~~~~----~~-~~~~~~~~ly~~g~~~~~~yd~~~-W~~v~~~~~~---  247 (317)
                      .+|++|++-|  ...++++...+.+  ..+...++    .. ++...++++|++-|+.+|.|+..+ .+.+...|..   
T Consensus        27 ~~g~~yfFkg--~~~Wr~~~~~~~~~p~~Is~~wpgLP~~IDAA~~~~~~~yfFkG~~yw~~~~~~~~~~~~gyPk~i~~  104 (219)
T 1hxn_A           27 NHGATYVFSG--SHYWRLDTNRDGWHSWPIAHQWPQGPSTVDAAFSWEDKLYLIQDTKVYVFLTKGGYTLVNGYPKRLEK  104 (219)
T ss_dssp             TTSCEEEEET--TEEEESSSSSCTTCCEEGGGTCTTSCSSCSEEEEETTEEEEEETTEEEEEECSSSCEECTTCCEEHHH
T ss_pred             CCCcEEEEeC--CEEEEEcCCCCCCCceEhhhhccCCCCCccEEEEECCcEEEecCCEEEEEeCCCCceecCCCCeehhh
Confidence            5899999966  4566666543321  12222221    22 233458999999999999998653 3333322211   


Q ss_pred             -----c----ccccEEEEE-ECCeEEEEeCcccCCCCceecccCcceeEeecCCC-CCceeec
Q 021080          248 -----R----RRIGFAMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE-RPTWRQV  299 (317)
Q Consensus       248 -----~----~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~-~~~W~~~  299 (317)
                           .    .+..+++.. .++++|++-|              +..|.||..+. +..|+..
T Consensus       105 ~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG--------------~~ywr~d~~~~P~~i~~~~  153 (219)
T 1hxn_A          105 ELGSPPVISLEAVDAAFVCPGSSRLHIMAG--------------RRLWWLDLKSGAQATWTEL  153 (219)
T ss_dssp             HHCCCSSCCCSCCCEEECCTTCCEEEEEET--------------TEEEEEEGGGGGGCCCEEE
T ss_pred             ccCCCCcccccccceeEEecCCCEEEEEeC--------------CEEEEEeCCCCceEhhhcC
Confidence                 1    113333322 2589999977              25678886654 2245544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=88.38  E-value=12  Score=32.49  Aligned_cols=85  Identities=19%  Similarity=0.207  Sum_probs=52.0

Q ss_pred             CCEEEEEecCc-eeEEEEeCCCCcEEecc-CCcc-CCcEEE--EcCeEEEEeC--cEEEEecCCc--eEEEecccccccc
Q 021080          180 GGKVHVLHKGL-STVQVLDHMGLGWTVED-YGWL-QGPMAI--VHDSVYLMSH--GLIIKQHRDV--RKVVASASEFRRR  250 (317)
Q Consensus       180 ~g~lyv~gG~~-~~v~~yd~~~~~W~~~~-~~~~-~~~~~~--~~~~ly~~g~--~~~~~yd~~~--W~~v~~~~~~~~r  250 (317)
                      +|.||+..-.. ..|+++++....-+.+- .... +..++.  .+++||+.+.  +.|+.++.+.  -+.+....   ..
T Consensus       170 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~---~~  246 (349)
T 3v64_C          170 EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG---LP  246 (349)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---CS
T ss_pred             cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC---CC
Confidence            68999986544 78999998765433332 1111 233444  2689999985  6888888765  23332211   11


Q ss_pred             ccEEEEEECCeEEEEeC
Q 021080          251 IGFAMIGMGDDIYVIGG  267 (317)
Q Consensus       251 ~~~~~~~~~~~lyv~GG  267 (317)
                      .-.+++..++.||+..-
T Consensus       247 ~P~giav~~~~ly~td~  263 (349)
T 3v64_C          247 HPFAITVFEDSLYWTDW  263 (349)
T ss_dssp             SEEEEEEETTEEEEEET
T ss_pred             CceEEEEECCEEEEecC
Confidence            23456668899998853

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=88.17  E-value=11  Score=32.02  Aligned_cols=86  Identities=12%  Similarity=0.066  Sum_probs=51.4

Q ss_pred             CCEEEEEecC-ceeEEEEeCCCCcEEecc--CCccCCcEEEE--cCeEEEEeC--cEEEEecCCc--eEEEecccccccc
Q 021080          180 GGKVHVLHKG-LSTVQVLDHMGLGWTVED--YGWLQGPMAIV--HDSVYLMSH--GLIIKQHRDV--RKVVASASEFRRR  250 (317)
Q Consensus       180 ~g~lyv~gG~-~~~v~~yd~~~~~W~~~~--~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~--W~~v~~~~~~~~r  250 (317)
                      ++.||+..-. ...|+++++....-+.+.  ....+..++.-  +++||+.+.  +.+..+|.+.  -+.+..... ...
T Consensus       131 ~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~-~~~  209 (316)
T 1ijq_A          131 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK-RLA  209 (316)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT-TTS
T ss_pred             CCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCC-ccC
Confidence            6899998643 368999998654433331  11112334433  679999986  6888888764  333322211 112


Q ss_pred             ccEEEEEECCeEEEEe
Q 021080          251 IGFAMIGMGDDIYVIG  266 (317)
Q Consensus       251 ~~~~~~~~~~~lyv~G  266 (317)
                      ...+++..++.||+.-
T Consensus       210 ~P~giav~~~~ly~~d  225 (316)
T 1ijq_A          210 HPFSLAVFEDKVFWTD  225 (316)
T ss_dssp             SEEEEEEETTEEEEEE
T ss_pred             CcEEEEEECCEEEEEE
Confidence            3346666788999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=87.98  E-value=13  Score=32.64  Aligned_cols=89  Identities=9%  Similarity=0.037  Sum_probs=51.2

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEE--EECCEEEEEecCceeEEEEeCCCCcEEec-cCCccCCcEEEEcCeEEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGV--VIGGKVHVLHKGLSTVQVLDHMGLGWTVE-DYGWLQGPMAIVHDSVYL  224 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~--~~~g~lyv~gG~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~ly~  224 (317)
                      ..+.++|..+++-..+-.+... ...-.++  .-+|++.+.|+....+..||..+++-... ............++.+.+
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~-~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~  203 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQP-GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILS  203 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCST-TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             CEEEEEECCCCCEEEEEEecCC-CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEE
Confidence            5688888888876655443332 2222222  23678888888777899999988753222 111112222334566655


Q ss_pred             EeC--cEEEEecCCc
Q 021080          225 MSH--GLIIKQHRDV  237 (317)
Q Consensus       225 ~g~--~~~~~yd~~~  237 (317)
                      .++  +.++.+|...
T Consensus       204 sgs~d~~i~~~d~~~  218 (420)
T 4gga_A          204 SGSRSGHIHHHDVRV  218 (420)
T ss_dssp             EEETTSEEEEEETTS
T ss_pred             EEeCCCceeEeeecc
Confidence            554  5677777655

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=87.82  E-value=13  Score=32.11  Aligned_cols=100  Identities=13%  Similarity=0.018  Sum_probs=51.9

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEe-ccC---C---ccCCcEEEE--cCeEEEEeC-----cEEEEecCCceEEEeccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTV-EDY---G---WLQGPMAIV--HDSVYLMSH-----GLIIKQHRDVRKVVASAS  245 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~-~~~---~---~~~~~~~~~--~~~ly~~g~-----~~~~~yd~~~W~~v~~~~  245 (317)
                      ++ +++.|+....+..||..+.+-.. +..   .   .........  ++.+++.++     +.+..||..+.+.+..+.
T Consensus       197 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~  275 (397)
T 1sq9_A          197 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS  275 (397)
T ss_dssp             TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec
Confidence            56 66677666789999998775322 111   1   111111222  455555543     478889887644433333


Q ss_pred             ccc-----------ccccEEEEEE--CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          246 EFR-----------RRIGFAMIGM--GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       246 ~~~-----------~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .+.           .......+.+  ++++++.|+.+            ..|.+||+.+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~  323 (397)
T 1sq9_A          276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD------------GKLRFWDVKTK  323 (397)
T ss_dssp             BC--------CCBSBSSCEEEEEECSSSSEEEEEETT------------SEEEEEETTTT
T ss_pred             cCcccccccccccccCCcEEEEEECCCCCEEEEEeCC------------CeEEEEEcCCC
Confidence            100           1111122222  46666666632            26788898766

>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A

Probab=87.27  E-value=11  Score=30.64  Aligned_cols=96  Identities=10%  Similarity=0.102  Sum_probs=54.1

Q ss_pred             CCEEEEEecCceeEEEEeCCCCc--E-EeccC-Ccc----CCcEEEE---cCeEEEEeCcEEEEecCCceEEEecccc--
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLG--W-TVEDY-GWL----QGPMAIV---HDSVYLMSHGLIIKQHRDVRKVVASASE--  246 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~--W-~~~~~-~~~----~~~~~~~---~~~ly~~g~~~~~~yd~~~W~~v~~~~~--  246 (317)
                      ++++|++-|  +..++||..+..  + ..+.. ..+    ...+|..   ++++|++.|+..+.||..+-+....-|.  
T Consensus        87 ~~k~yfFkG--~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~~ywr~d~~~~~v~~gyPr~i  164 (218)
T 1gen_A           87 EEKAVFFAG--NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLI  164 (218)
T ss_dssp             TTEEEEEET--TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETTEEEEEETTTTEECSSCCEEH
T ss_pred             CCEEEEEeC--CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECCEEEEEECccccccCCCCcch
Confidence            689999966  568888853110  0 01111 111    2344443   5899999999999999765222221111  


Q ss_pred             ------ccccccEEEEEEC--CeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          247 ------FRRRIGFAMIGMG--DDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       247 ------~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                            ...... ++....  |++|++-|              +..+.||..+.
T Consensus       165 ~~~w~g~p~~id-aAf~~~~~g~~YfFkg--------------~~y~~~~~~~~  203 (218)
T 1gen_A          165 ADAWNAIPDNLD-AVVDLQGGGHSYFFKG--------------AYYLKLENQSL  203 (218)
T ss_dssp             HHHSSSCCSSCS-EEEECTTTCEEEEEET--------------TEEEEEETTEE
T ss_pred             hhccCCCCCCCC-EEEEEcCCCcEEEEEC--------------CEEEEEECCce
Confidence                  011222 334443  89999866              25667777654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=87.25  E-value=9.9  Score=32.28  Aligned_cols=89  Identities=11%  Similarity=-0.056  Sum_probs=49.8

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec--CceeEEEEeCCCCcEEeccCCcc----CCcEEEE-cC
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL----QGPMAIV-HD  220 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~----~~~~~~~-~~  220 (317)
                      -.++.+|.++++++.+........-...+..-+|+||+.+.  ....+..||+.++.++.+.....    +..++.. ++
T Consensus        18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg   97 (347)
T 3hfq_A           18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEAR   97 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTT
T ss_pred             EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCC
Confidence            34666777788776643221110111122333788888764  25689999998887766543211    2233333 34


Q ss_pred             -eEEEEeC--cEEEEecCC
Q 021080          221 -SVYLMSH--GLIIKQHRD  236 (317)
Q Consensus       221 -~ly~~g~--~~~~~yd~~  236 (317)
                       .+|+.+.  +.+..|+..
T Consensus        98 ~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           98 QLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             TEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEEeC
Confidence             4777762  667777654

>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A

Probab=87.17  E-value=7.2  Score=31.88  Aligned_cols=117  Identities=9%  Similarity=0.067  Sum_probs=64.0

Q ss_pred             CCceeeCCCCC---ccCCCceEEE-EECCEEEEEecCceeEEEEe--CCC-------------CcEEeccCC--ccCCcE
Q 021080          157 KDVWVPIPDLH---RTHNSACTGV-VIGGKVHVLHKGLSTVQVLD--HMG-------------LGWTVEDYG--WLQGPM  215 (317)
Q Consensus       157 t~~W~~~~~~p---~~~r~~~~~~-~~~g~lyv~gG~~~~v~~yd--~~~-------------~~W~~~~~~--~~~~~~  215 (317)
                      +..|..++...   .. ..  ++. ..+|++|++-|  +..++|+  +.+             +.|..++..  +....+
T Consensus        48 ~~~W~~Lp~~~f~p~~-iD--aaf~~~~g~~~fFKg--~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDA  122 (227)
T 3lp9_A           48 RDGFKSLNQTIFGSYG-ID--CSFDTENNEAFIFYE--NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDA  122 (227)
T ss_dssp             HHHSGGGTTSHHHHHC-CS--EEEECSTTEEEEEET--TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSE
T ss_pred             hhcCCcCCcccCCCCC-ce--EEEECCCCEEEEEeC--CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccE
Confidence            45687775432   22 21  122 36899999976  4677777  321             123333211  112344


Q ss_pred             EEE---cCeEEEEeCcEEEEecCCceE-------EEe-cccccc-----ccccEEEEE-ECCeEEEEeCcccCCCCceec
Q 021080          216 AIV---HDSVYLMSHGLIIKQHRDVRK-------VVA-SASEFR-----RRIGFAMIG-MGDDIYVIGGVIGPDRWNWDI  278 (317)
Q Consensus       216 ~~~---~~~ly~~g~~~~~~yd~~~W~-------~v~-~~~~~~-----~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~  278 (317)
                      |..   ++++|++.|+..+.|+...=+       .+. .+|...     ....+++.. .++++|++-|           
T Consensus       123 A~~~~~~~k~yfFkG~~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg-----------  191 (227)
T 3lp9_A          123 AYRSTRGKEVYLFKGDQYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKD-----------  191 (227)
T ss_dssp             EEECSSTTEEEEEETTEEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEET-----------
T ss_pred             EEEECCCCEEEEEECCEEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEEC-----------
Confidence            433   589999999999999965311       111 223111     233343332 3689999977           


Q ss_pred             ccCcceeEeecCCC
Q 021080          279 KPMSDVDVLTVGAE  292 (317)
Q Consensus       279 ~~~~~v~~yd~~~~  292 (317)
                         +..|.||..+.
T Consensus       192 ---~~Ywr~d~~~~  202 (227)
T 3lp9_A          192 ---DHYARVKVTPX  202 (227)
T ss_dssp             ---TEEEEEECCSS
T ss_pred             ---CEEEEEECCcc
Confidence               25567777653

>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A

Probab=87.15  E-value=15  Score=32.32  Aligned_cols=97  Identities=7%  Similarity=0.057  Sum_probs=57.1

Q ss_pred             CCEEEEEecCceeEEEEeCCCCc--E-EeccCC-cc----CCcEEEE---cCeEEEEeCcEEEEecCCceEEEeccc---
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLG--W-TVEDYG-WL----QGPMAIV---HDSVYLMSHGLIIKQHRDVRKVVASAS---  245 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~--W-~~~~~~-~~----~~~~~~~---~~~ly~~g~~~~~~yd~~~W~~v~~~~---  245 (317)
                      +|++|++-|  +..++|+..+..  + ..+... .+    ...+|..   ++++|++-|+..|.||..+-+....-|   
T Consensus       236 ~g~~~fFkg--~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG~~yw~yd~~~~~v~~gyPk~I  313 (365)
T 3ba0_A          236 RNQVFLFKD--DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDNQYWRYDERRQMMDPGYPKLI  313 (365)
T ss_dssp             GTEEEEEET--TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEETTEEEEEETTTTEECSSCCCCH
T ss_pred             CCEEEEEeC--CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEECCEEEEEeCCcceecCCCCcch
Confidence            799999966  457777654221  1 122221 11    2334432   479999999999999976533222222   


Q ss_pred             -----cccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          246 -----EFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       246 -----~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                           ........++..-++++|++-|              +..|.||..+.
T Consensus       314 ~~~f~g~p~~iDaA~~~~~g~~YfFkg--------------~~ywr~d~~~~  351 (365)
T 3ba0_A          314 TKNFQGIGPKIDAVFYSKNKYYYFFQG--------------SNQFEYDFLLQ  351 (365)
T ss_dssp             HHHSTTCCSSCSEEEEETTTEEEEEET--------------TEEEEEETTTT
T ss_pred             hhcCCCCCCccceeeEecCCcEEEEeC--------------CEEEEEECCcc
Confidence                 1112233333333889999866              26788998876

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=87.04  E-value=13  Score=31.57  Aligned_cols=99  Identities=15%  Similarity=0.136  Sum_probs=57.9

Q ss_pred             ECCEEEEEecCceeEEEEeCCCCcEEecc--CCccCCcEEE--EcCeEEEEeC---cEEEEecCCc-e-EEEeccccccc
Q 021080          179 IGGKVHVLHKGLSTVQVLDHMGLGWTVED--YGWLQGPMAI--VHDSVYLMSH---GLIIKQHRDV-R-KVVASASEFRR  249 (317)
Q Consensus       179 ~~g~lyv~gG~~~~v~~yd~~~~~W~~~~--~~~~~~~~~~--~~~~ly~~g~---~~~~~yd~~~-W-~~v~~~~~~~~  249 (317)
                      .+++||+.-.....|+++|+....-..+-  .+..+..+++  .++.||+.+.   ..++.++.+. - +.+....   .
T Consensus        87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~---~  163 (316)
T 1ijq_A           87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN---I  163 (316)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS---C
T ss_pred             cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECC---C
Confidence            37899998765678999998765433221  1111233344  2678999874   5788888765 2 2232111   1


Q ss_pred             cccEEEEEE--CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          250 RIGFAMIGM--GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       250 r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ....+++.-  +++||+.-..            .+.|+++|++..
T Consensus       164 ~~P~gla~d~~~~~lY~~D~~------------~~~I~~~d~dg~  196 (316)
T 1ijq_A          164 QWPNGITLDLLSGRLYWVDSK------------LHSISSIDVNGG  196 (316)
T ss_dssp             SCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSC
T ss_pred             CCceEEEEeccCCEEEEEECC------------CCeEEEEecCCC
Confidence            222344443  6789987531            236777777654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=86.99  E-value=13  Score=31.55  Aligned_cols=89  Identities=4%  Similarity=-0.148  Sum_probs=45.4

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEE--eccC-CccCCcEEEE--cCeEE
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWT--VEDY-GWLQGPMAIV--HDSVY  223 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~--~~~~-~~~~~~~~~~--~~~ly  223 (317)
                      .+.+||.++.+-.............+.+..-++.+++.|+....+..||..+..-.  .+.. ..........  ++...
T Consensus       150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l  229 (343)
T 3lrv_A          150 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWM  229 (343)
T ss_dssp             CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEE
T ss_pred             cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEE
Confidence            45567766665433221111101122222336788888887778999999887632  2322 1111111122  34433


Q ss_pred             EE-eCcEEEEecCCc
Q 021080          224 LM-SHGLIIKQHRDV  237 (317)
Q Consensus       224 ~~-g~~~~~~yd~~~  237 (317)
                      +. +.+.+..+|..+
T Consensus       230 ~s~~~~~v~iwd~~~  244 (343)
T 3lrv_A          230 VVECDQTVVCFDLRK  244 (343)
T ss_dssp             EEEESSBEEEEETTS
T ss_pred             EEEeCCeEEEEEcCC
Confidence            33 346788888765

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=86.48  E-value=14  Score=33.62  Aligned_cols=58  Identities=9%  Similarity=0.023  Sum_probs=38.6

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEE-----eccCCc----cCCcE-EEEcCeEEEEeCcEEEEecCCceE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWT-----VEDYGW----LQGPM-AIVHDSVYLMSHGLIIKQHRDVRK  239 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~-----~~~~~~----~~~~~-~~~~~~ly~~g~~~~~~yd~~~W~  239 (317)
                      ++++|++-|  +..++||..+++-.     .+...+    ....+ ...++++|++.|+..|.||..+-+
T Consensus       367 ~~k~yfFkG--~~yw~yd~~~~~~~~gYPk~I~~~fpgip~~iDAA~~~~g~~YFFkg~~ywr~d~~~~~  434 (450)
T 1su3_A          367 TGKTYFFVA--NKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHGTRQYKFDPKTKR  434 (450)
T ss_dssp             TTEEEEEET--TEEEEEETTTTEECSSCSEEHHHHSTTSCSCCSEEEEETTEEEEEETTEEEEEETTTTE
T ss_pred             CCeEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCCCCCccEEEEcCCeEEEEeCCEEEEEECCcce
Confidence            689999976  57999998754322     111111    12233 335789999999999999987633

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=86.29  E-value=13  Score=30.62  Aligned_cols=110  Identities=9%  Similarity=0.037  Sum_probs=56.1

Q ss_pred             EEEECCEEEEEecCceeEEEEeCCCCcEE-eccCCccCCcEEEE--cCeEEEEeC-cEEEEecCCceEEEeccccccccc
Q 021080          176 GVVIGGKVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQGPMAIV--HDSVYLMSH-GLIIKQHRDVRKVVASASEFRRRI  251 (317)
Q Consensus       176 ~~~~~g~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~--~~~ly~~g~-~~~~~yd~~~W~~v~~~~~~~~r~  251 (317)
                      +..-+++ ++.|+....+..||..+.+-. .+............  ++.++..+. +.+..||.++.+.+..+.......
T Consensus       191 ~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i  269 (313)
T 3odt_A          191 AVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISI  269 (313)
T ss_dssp             EEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCE
T ss_pred             EEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceE
Confidence            3445777 666666778999999876522 22111111111122  445444443 789999987744443333111111


Q ss_pred             cEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccC
Q 021080          252 GFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM  302 (317)
Q Consensus       252 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~  302 (317)
                       ..+... +++ ++.|+.+            ..|.+||++++  ++.....+
T Consensus       270 -~~~~~~~~~~-~~~~~~d------------g~i~iw~~~~~--~~~~~~~~  305 (313)
T 3odt_A          270 -WSVDCMSNGD-IIVGSSD------------NLVRIFSQEKS--RWASEDEI  305 (313)
T ss_dssp             -EEEEECTTSC-EEEEETT------------SCEEEEESCGG--GCCC----
T ss_pred             -EEEEEccCCC-EEEEeCC------------CcEEEEeCCCC--ceeehhhh
Confidence             222222 556 4455432            26889999988  76554433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=86.23  E-value=0.33  Score=43.00  Aligned_cols=106  Identities=10%  Similarity=0.058  Sum_probs=45.8

Q ss_pred             EEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCccCCcEEEEcCeEEEEe--CcEEEEecCCc----eEEEeccccc
Q 021080          176 GVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQGPMAIVHDSVYLMS--HGLIIKQHRDV----RKVVASASEF  247 (317)
Q Consensus       176 ~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~ly~~g--~~~~~~yd~~~----W~~v~~~~~~  247 (317)
                      .++.++.+|+.+. ...+.++|..+++  |+... .......+..++++|+.+  .+.++.+|.++    |+.-...+..
T Consensus         5 P~v~~~~v~~gs~-dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            5 VTLPETLLFVSTL-DGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             ---CTTEEEEEET-TSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred             CeeeCCEEEEEcC-CCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence            3456777777654 4579999988775  87654 222223344567788875  47899999743    7643222211


Q ss_pred             cccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080          248 RRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       248 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~  298 (317)
                       ... ..++..++.||+ |+.            -..++.+|+++++..|+.
T Consensus        83 -~~~-sp~~~~~~~v~~-g~~------------dg~v~a~D~~tG~~~w~~  118 (369)
T 2hz6_A           83 -VQA-SPCRSSDGILYM-GKK------------QDIWYVIDLLTGEKQQTL  118 (369)
T ss_dssp             -HTT-CSCC-----CCC-CEE------------EEEEEEECCC--------
T ss_pred             -ccc-CceEecCCEEEE-EeC------------CCEEEEEECCCCcEEEEe
Confidence             011 111113455543 221            125788888888667864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=86.17  E-value=10  Score=35.54  Aligned_cols=48  Identities=25%  Similarity=0.074  Sum_probs=27.4

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEc
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLG  108 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~G  108 (317)
                      ++.+||... ....+..+|..+++-..--+...     .-+.++..  +..+|+.+
T Consensus       166 ~~~~~V~~~-~~~~V~viD~~t~~v~~~i~~g~-----~p~~v~~SpDGr~lyv~~  215 (567)
T 1qks_A          166 ENLFSVTLR-DAGQIALIDGSTYEIKTVLDTGY-----AVHISRLSASGRYLFVIG  215 (567)
T ss_dssp             GGEEEEEET-TTTEEEEEETTTCCEEEEEECSS-----CEEEEEECTTSCEEEEEE
T ss_pred             CceEEEEeC-CCCeEEEEECCCCeEEEEEeCCC-----CccceEECCCCCEEEEEc
Confidence            456777654 35789999999886543212221     11333332  45688764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=86.12  E-value=16  Score=31.70  Aligned_cols=97  Identities=8%  Similarity=-0.034  Sum_probs=51.7

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEe-ccC-CccCCcEEEE--cCe-EEEEeC--cEEEEecCCc----eEEEecccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTV-EDY-GWLQGPMAIV--HDS-VYLMSH--GLIIKQHRDV----RKVVASASEFR  248 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~-~~~-~~~~~~~~~~--~~~-ly~~g~--~~~~~yd~~~----W~~v~~~~~~~  248 (317)
                      ++++.+.|+....+..||+.+..-.. +.. ..........  ++. +++.++  +.++.||...    -..+....   
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~---  334 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE---  334 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST---
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC---
Confidence            67777777766779999998775322 111 1111111222  343 444443  6888888765    22222211   


Q ss_pred             ccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCC
Q 021080          249 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA  291 (317)
Q Consensus       249 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~  291 (317)
                      ...-..+...++++++.|+.+            ..+.+||+.+
T Consensus       335 ~~~v~~~~~~~~~~l~s~~~d------------~~v~iw~~~~  365 (420)
T 3vl1_A          335 GTPINNVYFAAGALFVSSGFD------------TSIKLDIISD  365 (420)
T ss_dssp             TSCEEEEEEETTEEEEEETTT------------EEEEEEEECC
T ss_pred             CCCceEEEeCCCCEEEEecCC------------ccEEEEeccC
Confidence            112223344477888877743            2466777665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=86.03  E-value=15  Score=31.19  Aligned_cols=99  Identities=7%  Similarity=0.011  Sum_probs=52.3

Q ss_pred             CEEEEEecCceeEEEEeCCCCcEEeccCCcc----CCcEEEEcCeEEEEeC---------cEEEEecCCc---eEEEecc
Q 021080          181 GKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSH---------GLIIKQHRDV---RKVVASA  244 (317)
Q Consensus       181 g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~----~~~~~~~~~~ly~~g~---------~~~~~yd~~~---W~~v~~~  244 (317)
                      +.|||.......|.+||+.+++....-....    ...++...+.+|...+         ..++.++...   -..+...
T Consensus       208 g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~  287 (329)
T 3fvz_A          208 DQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV  287 (329)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC
Confidence            8999998767889999998666543211110    1111122244444443         3677777554   2222211


Q ss_pred             ccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          245 SEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       245 ~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      +. ....-.+++.. +|.||+....            .+.|.+|+++..
T Consensus       288 ~~-~~~~p~~ia~~~dG~lyvad~~------------~~~I~~~~~~~~  323 (329)
T 3fvz_A          288 RK-HFDMPHDIVASEDGTVYIGDAH------------TNTVWKFTLTEK  323 (329)
T ss_dssp             SS-CCSSEEEEEECTTSEEEEEESS------------SCCEEEEEEEEC
T ss_pred             CC-ccCCeeEEEECCCCCEEEEECC------------CCEEEEEeCCcc
Confidence            11 11122334433 5689987642            236788887653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=85.91  E-value=15  Score=30.95  Aligned_cols=87  Identities=7%  Similarity=-0.032  Sum_probs=47.7

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEE-EECCEEEEEecCceeEEEEeCCCCc---EEecc---------CCccCCcE
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGV-VIGGKVHVLHKGLSTVQVLDHMGLG---WTVED---------YGWLQGPM  215 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~-~~~g~lyv~gG~~~~v~~yd~~~~~---W~~~~---------~~~~~~~~  215 (317)
                      .+.+||+.+.+.+.+...+.. +.....+ ..++.+|+.......++++|+.+.+   |...+         ....+..+
T Consensus        96 ~v~~~d~~~g~~~~~~~~~~~-~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi  174 (306)
T 2p4o_A           96 PVVSLVKSDGTVETLLTLPDA-IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL  174 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTC-SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred             eEEEEcCCCCeEEEEEeCCCc-cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc
Confidence            355667666666555444433 3332222 3356788875435689999987642   21111         11112223


Q ss_pred             EEEcCeEEEEeC--cEEEEecCC
Q 021080          216 AIVHDSVYLMSH--GLIIKQHRD  236 (317)
Q Consensus       216 ~~~~~~ly~~g~--~~~~~yd~~  236 (317)
                      ..-++.||+...  +.+++|+.+
T Consensus       175 s~dg~~lyv~d~~~~~I~~~~~~  197 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLRIPVD  197 (306)
T ss_dssp             EEETTEEEEEETTTTEEEEEEBC
T ss_pred             CcCCCEEEEEeCCCCEEEEEEeC
Confidence            223457999874  789988864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=85.87  E-value=14  Score=35.57  Aligned_cols=99  Identities=14%  Similarity=0.121  Sum_probs=55.9

Q ss_pred             ECCEEEEEecCceeEEEEeCCCCcEEeccC-C-ccCCcEEE--EcCeEEEEeC---cEEEEecCCc--eEEEeccccccc
Q 021080          179 IGGKVHVLHKGLSTVQVLDHMGLGWTVEDY-G-WLQGPMAI--VHDSVYLMSH---GLIIKQHRDV--RKVVASASEFRR  249 (317)
Q Consensus       179 ~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~-~-~~~~~~~~--~~~~ly~~g~---~~~~~yd~~~--W~~v~~~~~~~~  249 (317)
                      .+++||+.-.....|+++|+....-..+-. . ..+..+++  .++.||+.+.   ..|++++.+.  -+.+....   .
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~---l  539 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN---I  539 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS---C
T ss_pred             eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC---C
Confidence            468899986555679999987765443322 1 12334444  2678998873   5788877654  33332111   1


Q ss_pred             cccEEEEE--ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          250 RIGFAMIG--MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       250 r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ....+++.  .+++||+.-..            .+.|+++|+...
T Consensus       540 ~~PnGlavd~~~~~LY~aD~~------------~~~I~~~d~dG~  572 (699)
T 1n7d_A          540 QWPNGITLDLLSGRLYWVDSK------------LHSISSIDVNGG  572 (699)
T ss_dssp             SSCCCEEECTTTCCEEEEETT------------TTEEEEECSSSS
T ss_pred             CCccEEEEeccCCEEEEEecC------------CCeEEEEccCCC
Confidence            11123333  36788887531            236777777653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=85.80  E-value=21  Score=32.72  Aligned_cols=129  Identities=5%  Similarity=-0.061  Sum_probs=66.2

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEE--CCEEEEEecCceeEEEEeCCCCcEEeccC--CccCCcEEEE-----
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLGWTVEDY--GWLQGPMAIV-----  218 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~--~g~lyv~gG~~~~v~~yd~~~~~W~~~~~--~~~~~~~~~~-----  218 (317)
                      ..+.+||..+++... ..+... ......+.+  ++++.+.|+....+..||..+.+-...-.  .......+..     
T Consensus       467 ~~i~~~~~~~~~~~~-~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  544 (615)
T 1pgu_A          467 NTIQVFKLSDLEVSF-DLKTPL-RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK  544 (615)
T ss_dssp             SCEEEEETTEEEEEE-ECSSCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred             CeEEEEECCCccccc-cccCCc-cCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccc
Confidence            346667777665532 222211 222233333  77888888766789999998775432211  1111122222     


Q ss_pred             -------cCeEEEEeC--cEEEEecCCce-EEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEee
Q 021080          219 -------HDSVYLMSH--GLIIKQHRDVR-KVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLT  288 (317)
Q Consensus       219 -------~~~ly~~g~--~~~~~yd~~~W-~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd  288 (317)
                             ++++.+.++  +.++.||.+.. +.+..+..-..........-+++ ++.+|.+            ..|.+||
T Consensus       545 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d------------~~v~iw~  611 (615)
T 1pgu_A          545 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD------------ACIKRWN  611 (615)
T ss_dssp             -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT------------SCEEEEE
T ss_pred             cccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCC------------ceEEEEe
Confidence                   566666654  67888887763 44433331111121222334677 6666633            2567777


Q ss_pred             cCC
Q 021080          289 VGA  291 (317)
Q Consensus       289 ~~~  291 (317)
                      +++
T Consensus       612 ~~~  614 (615)
T 1pgu_A          612 VVL  614 (615)
T ss_dssp             EC-
T ss_pred             eec
Confidence            764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=85.78  E-value=18  Score=31.99  Aligned_cols=98  Identities=13%  Similarity=0.093  Sum_probs=58.3

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccC-Ccc-CCcEEE--EcCeEEEEeC---cEEEEecCCc--eEEEecccccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDY-GWL-QGPMAI--VHDSVYLMSH---GLIIKQHRDV--RKVVASASEFRRR  250 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~-~~~-~~~~~~--~~~~ly~~g~---~~~~~yd~~~--W~~v~~~~~~~~r  250 (317)
                      ++.||+.-.....|+++|+....-..+-. ... +..+++  .++.||..+.   ..++.++.+.  =+.+..-   ...
T Consensus       170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~---~l~  246 (400)
T 3p5b_L          170 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---NIQ  246 (400)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS---SCS
T ss_pred             CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC---CCC
Confidence            78999997766789999998765444322 111 223343  2688999873   5688887664  2222110   011


Q ss_pred             ccEEEEEE--CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          251 IGFAMIGM--GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       251 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .-.+++.-  +++||+.-.            ..+.|+++|++..
T Consensus       247 ~P~glavd~~~~~lY~aD~------------~~~~I~~~d~dG~  278 (400)
T 3p5b_L          247 WPNGITLDLLSGRLYWVDS------------KLHSISSIDVNGG  278 (400)
T ss_dssp             CEEEEEEETTTTEEEEEET------------TTTEEEEEETTSC
T ss_pred             ceEEEEEEeCCCEEEEEEC------------CCCEEEEEeCCCC
Confidence            22344443  688999843            1246778887654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=85.68  E-value=28  Score=35.56  Aligned_cols=131  Identities=7%  Similarity=-0.023  Sum_probs=65.1

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCccCC-cEEEE-cCeEEEEe
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQG-PMAIV-HDSVYLMS  226 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~-~~~~~-~~~ly~~g  226 (317)
                      .+.+||..+.+-.....-+.. ...+.+..-+|+..+.|+....+..||..++............ .++.. ++.++..+
T Consensus       984 ~i~i~d~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 1062 (1249)
T 3sfz_A          984 AIKIIELPNNRVFSSGVGHKK-AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS 1062 (1249)
T ss_dssp             CCEEEETTTTSCEEECCCCSS-CCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEE
T ss_pred             CEEEEEcCCCceeeecccCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence            456677666553322221212 2222233346777777776678999999988766443222111 11222 34444444


Q ss_pred             C-cEEEEecCCceEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          227 H-GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       227 ~-~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      . +.+..||..+-+.+..+.............-+++.++.|+.++            .+.+||..+.
T Consensus      1063 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~------------~v~iwd~~~~ 1117 (1249)
T 3sfz_A         1063 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADK------------TAKIWSFDLL 1117 (1249)
T ss_dssp             SSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSS------------CCCEECSSSS
T ss_pred             CCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCC------------cEEEEECCCc
Confidence            3 6788888765222221111011121222233566666666432            4567777655

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=85.64  E-value=13  Score=30.30  Aligned_cols=66  Identities=9%  Similarity=0.062  Sum_probs=44.7

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEec-cCCccCCcEEEEcCeEEEEeC--cEEEEecCCceEEEeccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVE-DYGWLQGPMAIVHDSVYLMSH--GLIIKQHRDVRKVVASAS  245 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~ly~~g~--~~~~~yd~~~W~~v~~~~  245 (317)
                      +++||+.-.....|.++|+....-..+ +....+..++.-++.+|+...  +.+..+|+++.+.+..++
T Consensus       178 ~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          178 SSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            578999977667899999976432222 211123345556889999974  789999998766555554

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=84.94  E-value=9.6  Score=32.64  Aligned_cols=22  Identities=14%  Similarity=-0.006  Sum_probs=16.1

Q ss_pred             CCEEEEEecCceeEEEEeCCCC
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGL  201 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~  201 (317)
                      ++++.+.|+....+..||..+.
T Consensus       116 ~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A          116 SGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             TSSEEEEEETTSCEEEEEECTT
T ss_pred             CCCEEEEEECCCeEEEEECCCC
Confidence            5677777776667888888654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=84.88  E-value=16  Score=30.62  Aligned_cols=59  Identities=7%  Similarity=-0.124  Sum_probs=33.2

Q ss_pred             ECCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE-----cCeEEEEeC--cEEEEecCCc
Q 021080          179 IGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV-----HDSVYLMSH--GLIIKQHRDV  237 (317)
Q Consensus       179 ~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~-----~~~ly~~g~--~~~~~yd~~~  237 (317)
                      -++.+++.|+....+..||..+..-...............     ++..++.++  +.+..||...
T Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          178 QEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             CCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence            4677777777667899999988764322211111112222     345554443  6777787654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=84.88  E-value=20  Score=31.55  Aligned_cols=58  Identities=7%  Similarity=-0.193  Sum_probs=30.8

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEE-eccCCccCCcEEEE--cCeEEEEeC--cEEEEecCCc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQGPMAIV--HDSVYLMSH--GLIIKQHRDV  237 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~  237 (317)
                      ++...+.|+....+..||..++.-. .+.........+..  ++.+++.++  +.+..+|..+
T Consensus       203 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            5666677776778999999877532 11111000111111  345555543  5677777654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=84.88  E-value=18  Score=31.07  Aligned_cols=103  Identities=5%  Similarity=-0.071  Sum_probs=49.9

Q ss_pred             CCEE-EEEecCceeEEEEeCCC------Cc---EE---ecc-------CCccCCcEEEE--cCeEEEEeC--cEEEEecC
Q 021080          180 GGKV-HVLHKGLSTVQVLDHMG------LG---WT---VED-------YGWLQGPMAIV--HDSVYLMSH--GLIIKQHR  235 (317)
Q Consensus       180 ~g~l-yv~gG~~~~v~~yd~~~------~~---W~---~~~-------~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~  235 (317)
                      ++.. ++.|+....+..||..+      ..   |.   .+.       ...........  ++ +++.+.  +.+..||.
T Consensus       136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~  214 (397)
T 1sq9_A          136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL  214 (397)
T ss_dssp             --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEET
T ss_pred             CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEEC
Confidence            5666 77776566788888776      22   21   111       00111222222  34 555554  78899998


Q ss_pred             CceEEEecccccc-c---cccEEEEEE--CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          236 DVRKVVASASEFR-R---RIGFAMIGM--GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       236 ~~W~~v~~~~~~~-~---r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .+-+.+..+.... .   ......+.+  ++++++.|+.+..         ...|.+||+.+.
T Consensus       215 ~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~---------~g~i~i~d~~~~  268 (397)
T 1sq9_A          215 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS---------FGCITLYETEFG  268 (397)
T ss_dssp             TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT---------EEEEEEEETTTC
T ss_pred             CCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC---------CceEEEEECCCC
Confidence            7633333222100 0   111122222  5677777764411         136788898766

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=84.85  E-value=16  Score=30.48  Aligned_cols=58  Identities=5%  Similarity=-0.235  Sum_probs=29.9

Q ss_pred             CCEEEEEecCceeEEEEeCCCCc-E-EeccCCccCCcEEEE---cCeEEEEeC--cEEEEecCCc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLG-W-TVEDYGWLQGPMAIV---HDSVYLMSH--GLIIKQHRDV  237 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~-W-~~~~~~~~~~~~~~~---~~~ly~~g~--~~~~~yd~~~  237 (317)
                      ++++.+.|+....+..||..++. - ..+.........+..   ++.+++.++  +.+..+|..+
T Consensus       108 ~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred             CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence            55666677766778888876652 1 111111011112222   334555543  6788888754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=84.83  E-value=14  Score=29.83  Aligned_cols=59  Identities=12%  Similarity=-0.012  Sum_probs=31.3

Q ss_pred             eeEEeeCCC-CceeeCCCCCccCCCceEEEEECCEEEEEec----CceeEEEEeCCCCcEEecc
Q 021080          149 QAEMYDPEK-DVWVPIPDLHRTHNSACTGVVIGGKVHVLHK----GLSTVQVLDHMGLGWTVED  207 (317)
Q Consensus       149 ~~~~yd~~t-~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG----~~~~v~~yd~~~~~W~~~~  207 (317)
                      .+.++|..+ .+...+...+...........-+++.+++++    ....++.+|..+..-..+.
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~  126 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT  126 (297)
T ss_dssp             EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC
T ss_pred             eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee
Confidence            566777777 6666554333210111122233555444444    2567888888777655554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=84.77  E-value=16  Score=30.31  Aligned_cols=98  Identities=9%  Similarity=-0.118  Sum_probs=51.7

Q ss_pred             CC-EEEEEecCceeEEEEeCC-CCcE------EeccCCc-c-CCcEEE-EcCeEEEEe--CcEEEEecCCc--eEEEecc
Q 021080          180 GG-KVHVLHKGLSTVQVLDHM-GLGW------TVEDYGW-L-QGPMAI-VHDSVYLMS--HGLIIKQHRDV--RKVVASA  244 (317)
Q Consensus       180 ~g-~lyv~gG~~~~v~~yd~~-~~~W------~~~~~~~-~-~~~~~~-~~~~ly~~g--~~~~~~yd~~~--W~~v~~~  244 (317)
                      +| .+|+.......+.+||+. +++.      ..++... . +..++. -+|.+|+..  .+.+..||+++  -...-..
T Consensus       186 dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~  265 (314)
T 1pjx_A          186 RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC  265 (314)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC
T ss_pred             CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC
Confidence            34 577775545678899875 3432      2222111 1 112222 257899885  47899999873  2221122


Q ss_pred             ccccccccEEEEE-ECCe-EEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          245 SEFRRRIGFAMIG-MGDD-IYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       245 ~~~~~r~~~~~~~-~~~~-lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      +  . ..-.+++. -+++ ||+....            .+.+++|+++..
T Consensus       266 ~--~-~~~~~i~~~~dg~~l~v~~~~------------~~~l~~~~~~~~  300 (314)
T 1pjx_A          266 P--F-EKPSNLHFKPQTKTIFVTEHE------------NNAVWKFEWQRN  300 (314)
T ss_dssp             S--S-SCEEEEEECTTSSEEEEEETT------------TTEEEEEECSSC
T ss_pred             C--C-CCceeEEECCCCCEEEEEeCC------------CCeEEEEeCCCC
Confidence            2  1 12222332 2444 7776542            136888998765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=84.42  E-value=22  Score=31.62  Aligned_cols=60  Identities=7%  Similarity=-0.173  Sum_probs=34.3

Q ss_pred             CEEEEEecCceeEEEEeCCCCcEEec-c-CCccCCcEEEE-cCeEEEEeC--cEEEEecCCceEE
Q 021080          181 GKVHVLHKGLSTVQVLDHMGLGWTVE-D-YGWLQGPMAIV-HDSVYLMSH--GLIIKQHRDVRKV  240 (317)
Q Consensus       181 g~lyv~gG~~~~v~~yd~~~~~W~~~-~-~~~~~~~~~~~-~~~ly~~g~--~~~~~yd~~~W~~  240 (317)
                      +++++.|+....+..||..+..-... . ........+.. ++++++.++  +.+..||..+.+.
T Consensus       210 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~  274 (450)
T 2vdu_B          210 HQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKN  274 (450)
T ss_dssp             CEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCE
T ss_pred             CcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcE
Confidence            77888887667789999877653321 1 11111111122 565555554  6888888776433

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=84.38  E-value=17  Score=30.34  Aligned_cols=132  Identities=8%  Similarity=-0.124  Sum_probs=60.7

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCccCC-cEEEE-cCeEEEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQG-PMAIV-HDSVYLM  225 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~-~~~~~-~~~ly~~  225 (317)
                      ..+.+||..+.+-...-.-... ...+.+..-++++++.|+....+..||..+..-...-...... .++.. ++.+...
T Consensus       195 ~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  273 (340)
T 4aow_A          195 KLVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA  273 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred             CEEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeec
Confidence            3566777777654322111111 1111112236777777776677888998776522111110111 11111 2333332


Q ss_pred             e-CcEEEEecCCceEEEeccccc------ccc--ccEEEEE-ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          226 S-HGLIIKQHRDVRKVVASASEF------RRR--IGFAMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       226 g-~~~~~~yd~~~W~~v~~~~~~------~~r--~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      + ++.+..||.+.-..+..+...      ...  .-.+++. -+++.++.||.+            ..|.+||++++
T Consensus       274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D------------g~v~iW~~~tG  338 (340)
T 4aow_A          274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD------------NLVRVWQVTIG  338 (340)
T ss_dssp             EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT------------SCEEEEEEEC-
T ss_pred             cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC------------CEEEEEeCCCc
Confidence            2 367778877652222211100      001  1111222 256777777643            25788999876

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=84.38  E-value=19  Score=30.99  Aligned_cols=100  Identities=11%  Similarity=-0.044  Sum_probs=48.0

Q ss_pred             ECCEEEEEecCceeEEEEeCCCCcEE-eccCCccCC-cEEEE-cCeEEEEeC--cEEEEecCCceEEEeccccccccccE
Q 021080          179 IGGKVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQG-PMAIV-HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGF  253 (317)
Q Consensus       179 ~~g~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~~~~-~~~~~-~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~  253 (317)
                      -++. +++|+....+..||..+..-. .+....... .++.. ++++++.++  +.+..||....+.+..+.. ....-.
T Consensus       216 ~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~  293 (425)
T 1r5m_A          216 DDDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG-HSQSIV  293 (425)
T ss_dssp             ETTE-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC-CSSCEE
T ss_pred             CCCE-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC-CCccEE
Confidence            3444 566665678999999876421 111111111 11222 444444443  6788888766322222221 111112


Q ss_pred             EEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          254 AMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       254 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .+....+.+++.++.+            ..+.+||+.+.
T Consensus       294 ~~~~~~~~~l~~~~~d------------~~i~i~d~~~~  320 (425)
T 1r5m_A          294 SASWVGDDKVISCSMD------------GSVRLWSLKQN  320 (425)
T ss_dssp             EEEEETTTEEEEEETT------------SEEEEEETTTT
T ss_pred             EEEECCCCEEEEEeCC------------CcEEEEECCCC
Confidence            3333323255555532            26778888766

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=84.34  E-value=18  Score=30.77  Aligned_cols=50  Identities=14%  Similarity=0.103  Sum_probs=26.3

Q ss_pred             EEeeCCCCceeeCCCCCccCCCceEEEEECCE-EEEEecCceeEEEEeCCCC
Q 021080          151 EMYDPEKDVWVPIPDLHRTHNSACTGVVIGGK-VHVLHKGLSTVQVLDHMGL  201 (317)
Q Consensus       151 ~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~-lyv~gG~~~~v~~yd~~~~  201 (317)
                      +.+|..+++.+.+...+......+..+. +++ ||+.......+..||..++
T Consensus        80 ~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~  130 (361)
T 3scy_A           80 FAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQD  130 (361)
T ss_dssp             EEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTT
T ss_pred             EEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCC
Confidence            3445555666665444322022222333 554 6666545567888888643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=83.96  E-value=17  Score=30.27  Aligned_cols=47  Identities=13%  Similarity=0.031  Sum_probs=26.0

Q ss_pred             ceeEEEEeCCCCcEEec-cCCccCCcEEEE-cCe-EEEEeCcEEEEecCCc
Q 021080          190 LSTVQVLDHMGLGWTVE-DYGWLQGPMAIV-HDS-VYLMSHGLIIKQHRDV  237 (317)
Q Consensus       190 ~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~-~~~-ly~~g~~~~~~yd~~~  237 (317)
                      ...+..||+.+.+.... +.......++.. +++ +|+. .+.++.+|.+.
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~  163 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEA  163 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTT
T ss_pred             CceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCC
Confidence            36799999988764322 211112223322 344 5555 56777887765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=83.53  E-value=19  Score=30.27  Aligned_cols=105  Identities=7%  Similarity=-0.126  Sum_probs=54.8

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE----cCeEEEEeC--cEEEEecCCceEEEeccccccccccE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV----HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGF  253 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~----~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~  253 (317)
                      +++..+.|+....+..||..+..-...............    ++.+++.++  +.+..||..+-+.+..+..  .....
T Consensus        97 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~  174 (368)
T 3mmy_A           97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL--PERCY  174 (368)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC--SSCEE
T ss_pred             CCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec--CCCce
Confidence            566666776667899999988875543322111122222    445555543  7888998776332222221  11222


Q ss_pred             EEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeec
Q 021080          254 AMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV  299 (317)
Q Consensus       254 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~  299 (317)
                      .+....+.+++.++             ...+.+||.......+..+
T Consensus       175 ~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~~~~~  207 (368)
T 3mmy_A          175 CADVIYPMAVVATA-------------ERGLIVYQLENQPSEFRRI  207 (368)
T ss_dssp             EEEEETTEEEEEEG-------------GGCEEEEECSSSCEEEEEC
T ss_pred             EEEecCCeeEEEeC-------------CCcEEEEEeccccchhhhc
Confidence            33444554444333             1256677877653344444

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=83.40  E-value=21  Score=30.64  Aligned_cols=130  Identities=11%  Similarity=0.005  Sum_probs=64.4

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEE----CCEEEEEecCceeEEEEeCCCCcEEec-cCCccCCcEEEE--cC
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI----GGKVHVLHKGLSTVQVLDHMGLGWTVE-DYGWLQGPMAIV--HD  220 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~----~g~lyv~gG~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~--~~  220 (317)
                      ..+.+||.++.+-...  +... ......+.+    ++.+++.|+....+..||..+.+-... .........+..  ++
T Consensus       176 ~~v~lwd~~~~~~~~~--~~~h-~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~  252 (354)
T 2pbi_B          176 GTCALWDVESGQLLQS--FHGH-GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG  252 (354)
T ss_dssp             SEEEEEETTTCCEEEE--EECC-SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             CcEEEEeCCCCeEEEE--EcCC-CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC
Confidence            4677888877654321  1101 111112212    456777777677899999988764322 111111111222  34


Q ss_pred             eEEEEeC--cEEEEecCCceEEEeccccccccccEEEEEE--CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          221 SVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGM--GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       221 ~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .+++.++  +.+..||...-+.+..............+.+  ++++++.|+.+            ..|.+||..++
T Consensus       253 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d------------~~i~vwd~~~~  316 (354)
T 2pbi_B          253 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND------------YTINVWDVLKG  316 (354)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT------------SCEEEEETTTC
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC------------CcEEEEECCCC
Confidence            5555543  6788888766333322221011112222222  56666666532            25778888665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=83.20  E-value=18  Score=29.79  Aligned_cols=55  Identities=9%  Similarity=0.126  Sum_probs=34.5

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEE--EECCEEEEEecCceeEEEEeCCCCcE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGV--VIGGKVHVLHKGLSTVQVLDHMGLGW  203 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~--~~~g~lyv~gG~~~~v~~yd~~~~~W  203 (317)
                      .++.++|.++++-..+-.+... ...-..+  .-+++..+.|+....+..||..+++-
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~~-~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQP-GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCST-TCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             CEEEEEECCCCCEEEEEEecCC-CCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence            4677888888776554333222 2122222  23677778888677899999988763

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=83.10  E-value=35  Score=33.01  Aligned_cols=146  Identities=9%  Similarity=-0.002  Sum_probs=78.3

Q ss_pred             Cce-EEEEEeCCCCceEEEeCCCCCEeecCCCCcccccc--CCe-eEEEe---CCEEEEEcCcCCCCCCCCCCCCCcccc
Q 021080           55 ENL-LCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHL--AHF-GVVST---AGKLFVLGGGSDAVDPLTGDQDGSFAT  127 (317)
Q Consensus        55 ~~~-l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r--~~~-~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~  127 (317)
                      ++. |+|...  ...+.+||+.++++......+..+...  ... ++...   ++.|+|..-.                 
T Consensus        76 ~g~~lWigt~--~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~-----------------  136 (781)
T 3v9f_A           76 VQPVIWIATQ--RAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYY-----------------  136 (781)
T ss_dssp             SSSEEEEEES--SSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESS-----------------
T ss_pred             CCCEEEEEeC--CCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECC-----------------
Confidence            445 777542  126899999999988763221110001  111 23332   4677764311                 


Q ss_pred             cceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCC-----CCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc
Q 021080          128 NEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPD-----LHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG  202 (317)
Q Consensus       128 ~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~-----~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~  202 (317)
                                          ..+.+||+.++++..+..     ++.. ....-..--+|.||+... ...+..||+.+++
T Consensus       137 --------------------~gl~~~~~~~~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~lwigt~-~~Gl~~~~~~~~~  194 (781)
T 3v9f_A          137 --------------------RGIEYLDIATGKFTHYNKSTVPALPSE-QTWTATEAEDGKLYIGHV-EGGLSILSLNDKS  194 (781)
T ss_dssp             --------------------SCEEEEETTTTEEEEESTTTCTTCSCC-CEEEEEEEETTEEEEEET-TTEEEEEETTTTE
T ss_pred             --------------------CCeeEEECCCCeEEeeccCcccCCCcc-ceEEEEECCCCCEEEEec-CCCeEEEcCCCCc
Confidence                                235567777777765532     2222 211112224888888532 2358999999988


Q ss_pred             EEeccCCc------cCCcEE--EE--cCeEEEEeCcEEEEecCCc--eEEE
Q 021080          203 WTVEDYGW------LQGPMA--IV--HDSVYLMSHGLIIKQHRDV--RKVV  241 (317)
Q Consensus       203 W~~~~~~~------~~~~~~--~~--~~~ly~~g~~~~~~yd~~~--W~~v  241 (317)
                      +.......      +...+.  ..  ++.|++...+.++.||+++  ++..
T Consensus       195 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~Gl~~~d~~~~~~~~~  245 (781)
T 3v9f_A          195 VKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSKGLALFNANTETFTNF  245 (781)
T ss_dssp             EEEECC--------CCSSEEEEEECTTCCEEEEETTEEEEEETTTTEEEC-
T ss_pred             eEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCCcHheECCCCCcEEEE
Confidence            87653211      111111  11  5678877666899999765  6544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=82.75  E-value=8.7  Score=32.17  Aligned_cols=65  Identities=8%  Similarity=-0.081  Sum_probs=42.0

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEE-EcCeEEEEeCcEEEEecCCc--eEEEecc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAI-VHDSVYLMSHGLIIKQHRDV--RKVVASA  244 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~-~~~~ly~~g~~~~~~yd~~~--W~~v~~~  244 (317)
                      ++.||++.-....+.+||+.++.-...........++. -++++++...+.++.||+++  .+.+...
T Consensus        24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~   91 (297)
T 3g4e_A           24 SNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVVLATV   91 (297)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEEEEec
Confidence            47899987766789999998876544432111112222 25678887788899998765  6655443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=82.61  E-value=14  Score=31.10  Aligned_cols=99  Identities=7%  Similarity=-0.042  Sum_probs=50.4

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE--cCeEEEEeC--c--------------EEEEecCCceEEE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV--HDSVYLMSH--G--------------LIIKQHRDVRKVV  241 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~--~~~ly~~g~--~--------------~~~~yd~~~W~~v  241 (317)
                      ++.+++.++....+..||..+.+-...-........+..  +++..++++  +              .+..||....+.+
T Consensus       229 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  308 (369)
T 3zwl_B          229 DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI  308 (369)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred             CCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence            666667776667899999987653322111111111111  333333332  1              5777777664444


Q ss_pred             eccccccccccEEEEEE--CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          242 ASASEFRRRIGFAMIGM--GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       242 ~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ..+..  .......+.+  ++++++.|+.+            ..|.+||++++
T Consensus       309 ~~~~~--~~~~v~~~~~s~~~~~l~s~~~d------------g~v~iw~~~~~  347 (369)
T 3zwl_B          309 GRVQG--HFGPLNTVAISPQGTSYASGGED------------GFIRLHHFEKS  347 (369)
T ss_dssp             EEEEC--CSSCEEEEEECTTSSEEEEEETT------------SEEEEEEECHH
T ss_pred             hheec--ccCcEEEEEECCCCCEEEEEcCC------------CeEEEEECccc
Confidence            43331  1111122222  56777777643            25778888765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=82.59  E-value=21  Score=30.10  Aligned_cols=130  Identities=14%  Similarity=-0.065  Sum_probs=66.2

Q ss_pred             ceeEEeeCCCCceeeC-CCCCccCCCceEEEEECC-EEEEEecCceeEEEEeCCCC---cEEeccCCccCCcEEE-EcCe
Q 021080          148 SQAEMYDPEKDVWVPI-PDLHRTHNSACTGVVIGG-KVHVLHKGLSTVQVLDHMGL---GWTVEDYGWLQGPMAI-VHDS  221 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~-~~~p~~~r~~~~~~~~~g-~lyv~gG~~~~v~~yd~~~~---~W~~~~~~~~~~~~~~-~~~~  221 (317)
                      ..+++||+.+.+.+.+ ..+..+   ..-+..-+| .||+.-.....|.+||+...   ..+.+...+.+..+++ -+|.
T Consensus       165 g~v~~~d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~~G~  241 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKELHVP---GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNADGH  241 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCC---CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECTTSC
T ss_pred             ceEEEEeCCCCEEEEeccCCccC---cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEECCCCC
Confidence            4577788877765443 122222   111122244 58888554568999998753   3333222111112222 2568


Q ss_pred             EEEEeC------------cEEEEecCCc-eEEEecccccc-ccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEe
Q 021080          222 VYLMSH------------GLIIKQHRDV-RKVVASASEFR-RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVL  287 (317)
Q Consensus       222 ly~~g~------------~~~~~yd~~~-W~~v~~~~~~~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~y  287 (317)
                      ||+...            +.+..||++. -...-..+... .....+++..+++|||.+..            .+.|.+|
T Consensus       242 l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~------------~~~i~~~  309 (322)
T 2fp8_A          242 FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF------------HGSVGIL  309 (322)
T ss_dssp             EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSS------------CSEEEEE
T ss_pred             EEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecC------------CCceEEE
Confidence            998853            4688999865 22222222100 12223344568899986531            2367788


Q ss_pred             ecCCC
Q 021080          288 TVGAE  292 (317)
Q Consensus       288 d~~~~  292 (317)
                      ++..+
T Consensus       310 ~~~~~  314 (322)
T 2fp8_A          310 VYDKK  314 (322)
T ss_dssp             EC---
T ss_pred             ecccc
Confidence            87654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=82.59  E-value=14  Score=31.12  Aligned_cols=57  Identities=14%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCce-EEEEE-C--CEEEEEecCceeEEEEeCCCC-cEEe
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSAC-TGVVI-G--GKVHVLHKGLSTVQVLDHMGL-GWTV  205 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~-~~~~~-~--g~lyv~gG~~~~v~~yd~~~~-~W~~  205 (317)
                      ..+.+||.++.+|..+..+... ...- +.+.. +  +.+.+.|+....+..||..++ .|..
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           81 RKVIIWREENGTWEKSHEHAGH-DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV  142 (316)
T ss_dssp             SCEEEECCSSSCCCEEEEECCC-SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred             CEEEEEECCCCcceEEEEccCC-CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence            3456677776666543222111 1111 22222 2  567777776667888888765 4653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=82.14  E-value=22  Score=29.93  Aligned_cols=63  Identities=8%  Similarity=-0.108  Sum_probs=32.3

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE--------cCeEEEEeC--cEEEEecCCceEEEe
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV--------HDSVYLMSH--GLIIKQHRDVRKVVA  242 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~--------~~~ly~~g~--~~~~~yd~~~W~~v~  242 (317)
                      ++.+.+.|+....+..||.....-..+.........+..        ++.+++.++  +.+..+|.++.+...
T Consensus       118 ~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  190 (319)
T 3frx_A          118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA  190 (319)
T ss_dssp             TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe
Confidence            566777777666788888876543333211110011111        222333332  678888887754443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=82.12  E-value=24  Score=30.50  Aligned_cols=101  Identities=8%  Similarity=-0.035  Sum_probs=54.3

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEec-cCCcc-------CCcEEE--EcCeEEEEeC--cEEEEecCCceEEEecc---
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVE-DYGWL-------QGPMAI--VHDSVYLMSH--GLIIKQHRDVRKVVASA---  244 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~-~~~~~-------~~~~~~--~~~~ly~~g~--~~~~~yd~~~W~~v~~~---  244 (317)
                      +++.++.|+....+..||..++.-... .....       ....+.  .++++.+.+.  +.++.||...-+.+..+   
T Consensus       260 ~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  339 (380)
T 3iz6_a          260 DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL  339 (380)
T ss_dssp             TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS
T ss_pred             CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc
Confidence            667777777667788999987753221 11000       112222  2566666664  67888887663333222   


Q ss_pred             ccc-cccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          245 SEF-RRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       245 ~~~-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ... ..+.......-+++.++.|+.++            .|.+|+++..
T Consensus       340 ~~~h~~~v~~l~~s~dg~~l~sgs~D~------------~i~iW~~~~~  376 (380)
T 3iz6_a          340 QNSHEGRISCLGLSSDGSALCTGSWDK------------NLKIWAFSGH  376 (380)
T ss_dssp             CSSCCCCCCEEEECSSSSEEEEECTTS------------CEEEEECCSS
T ss_pred             cCCCCCceEEEEECCCCCEEEEeeCCC------------CEEEEecCCC
Confidence            110 11122222233677778787542            4667777654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=81.42  E-value=26  Score=30.43  Aligned_cols=24  Identities=21%  Similarity=-0.068  Sum_probs=18.7

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGW  203 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W  203 (317)
                      ++++++.|+....+..||..++.-
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~~~~  241 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSETGFL  241 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcE
Confidence            677888887677799999887753

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=81.31  E-value=43  Score=32.82  Aligned_cols=113  Identities=8%  Similarity=0.056  Sum_probs=64.1

Q ss_pred             ceeEEeeCCCCceeeC--CCCCccCCCceEEEEE---CCEEEEEe-cCceeEEEEeCCCCcEEeccC-Ccc-CCcEEEE-
Q 021080          148 SQAEMYDPEKDVWVPI--PDLHRTHNSACTGVVI---GGKVHVLH-KGLSTVQVLDHMGLGWTVEDY-GWL-QGPMAIV-  218 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~--~~~p~~~r~~~~~~~~---~g~lyv~g-G~~~~v~~yd~~~~~W~~~~~-~~~-~~~~~~~-  218 (317)
                      ..++++|+....-+.+  ..+..|     .++++   +|.||+.- |....|+++++....=..+-. ... +..+++- 
T Consensus       493 ~~I~v~~ldG~~~~~l~~~~l~~P-----~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~  567 (791)
T 3m0c_C          493 GTVSVADTKGVKRKTLFRENGSKP-----RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL  567 (791)
T ss_dssp             TEEEEEETTSSSEEEEEECTTCCE-----EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEET
T ss_pred             CeEEEEeCCCCeEEEEEeCCCCCc-----ceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEec
Confidence            3455566554443333  233333     33333   58999986 334679999987654333322 111 2233332 


Q ss_pred             -cCeEEEEeC--cEEEEecCCc---eEEEeccccccccccEEEEEECCeEEEEeC
Q 021080          219 -HDSVYLMSH--GLIIKQHRDV---RKVVASASEFRRRIGFAMIGMGDDIYVIGG  267 (317)
Q Consensus       219 -~~~ly~~g~--~~~~~yd~~~---W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG  267 (317)
                       +++||+.+.  ..|..++.+.   ...+....  .....++++..+++||+.--
T Consensus       568 ~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~--~l~~P~glav~~~~lYwtD~  620 (791)
T 3m0c_C          568 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--RLAHPFSLAVFEDKVFWTDI  620 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEEECTT--TTSSEEEEEEETTEEEEEET
T ss_pred             CCCeEEEEeCCCCcEEEEecCCCceEEEecCCC--ccCCCCEEEEeCCEEEEEEC
Confidence             689999986  6888888765   33332211  11234567778999999863

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=81.31  E-value=11  Score=31.76  Aligned_cols=26  Identities=12%  Similarity=0.090  Sum_probs=19.4

Q ss_pred             CEEEEEecCceeEEEEeCCCCcEEec
Q 021080          181 GKVHVLHKGLSTVQVLDHMGLGWTVE  206 (317)
Q Consensus       181 g~lyv~gG~~~~v~~yd~~~~~W~~~  206 (317)
                      +.+.+.|+....+..||+.+..|...
T Consensus        71 ~~~l~s~s~D~~v~iWd~~~~~~~~~   96 (316)
T 3bg1_A           71 GNILASCSYDRKVIIWREENGTWEKS   96 (316)
T ss_dssp             SSCEEEEETTSCEEEECCSSSCCCEE
T ss_pred             CCEEEEEECCCEEEEEECCCCcceEE
Confidence            66777777667799999988776543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=81.20  E-value=26  Score=30.22  Aligned_cols=58  Identities=7%  Similarity=-0.143  Sum_probs=32.3

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEE-eccCCccCC-cEEEE-cC-eEEEEeC--cEEEEecCCc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQG-PMAIV-HD-SVYLMSH--GLIIKQHRDV  237 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~~~~-~~~~~-~~-~ly~~g~--~~~~~yd~~~  237 (317)
                      ++++++.|+....+..||..+.+-. .+....... .++.. ++ .+++.++  +.+..|+...
T Consensus       274 ~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          274 DEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             CSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             CCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            6777777776678999998876532 222111111 22222 33 4555554  5677777554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=81.03  E-value=26  Score=30.22  Aligned_cols=175  Identities=13%  Similarity=0.038  Sum_probs=92.9

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEE--eCCEEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVS--TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS  132 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  132 (317)
                      +++|++.-.   ..+..+++.......+..-.     ....+++.  .++.||+..-..                     
T Consensus        44 ~~~ll~~~~---~~I~~i~~~g~~~~~~~~~~-----~~~~~l~~d~~~~~ly~~D~~~---------------------   94 (349)
T 3v64_C           44 EPVLLFANR---IDIRQVLPHRSEYTLLLNNL-----ENAIALDFHHRRELVFWSDVTL---------------------   94 (349)
T ss_dssp             CCEEEEECB---SCEEEECTTSCCEEEEECSC-----SCEEEEEEETTTTEEEEEETTT---------------------
T ss_pred             CceeEeecc---cceEEEeCCCCeeEEeecCC-----CceEEEEEeccccEEEEEeccC---------------------
Confidence            445544432   56788888777666543211     11233333  357888876321                     


Q ss_pred             ecccCCCCCCCcCCCceeEEeeCCCCceeeC--CCCCccCCCceEEEE--ECCEEEEEecCceeEEEEeCCCCcEEeccC
Q 021080          133 YDPVTRGFTSCRKSISQAEMYDPEKDVWVPI--PDLHRTHNSACTGVV--IGGKVHVLHKGLSTVQVLDHMGLGWTVEDY  208 (317)
Q Consensus       133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~--~~~p~~~r~~~~~~~--~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~  208 (317)
                                     ..+.++++....-+.+  ..+..+   . ..++  .++.||+.-.....|+++++....-..+..
T Consensus        95 ---------------~~I~r~~~~g~~~~~~~~~~~~~p---~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~  155 (349)
T 3v64_C           95 ---------------DRILRANLNGSNVEEVVSTGLESP---G-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW  155 (349)
T ss_dssp             ---------------TEEEEEETTSCSCEEEECSSCSCC---C-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             ---------------CceEEEecCCCCceEEEeCCCCCc---c-EEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe
Confidence                           3455555555443333  122222   1 2233  378999997766789999987654333221


Q ss_pred             -C-ccCCcEEEE--cCeEEEEeC---cEEEEecCCc--eEEEeccccccccccEEEEE--ECCeEEEEeCcccCCCCcee
Q 021080          209 -G-WLQGPMAIV--HDSVYLMSH---GLIIKQHRDV--RKVVASASEFRRRIGFAMIG--MGDDIYVIGGVIGPDRWNWD  277 (317)
Q Consensus       209 -~-~~~~~~~~~--~~~ly~~g~---~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~  277 (317)
                       . ..+..+++-  ++.||..+.   ..+++++.+.  -+.+..-.   .....+++.  .+++||+.-..         
T Consensus       156 ~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~---~~~PnGla~d~~~~~lY~aD~~---------  223 (349)
T 3v64_C          156 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAK---------  223 (349)
T ss_dssp             TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSS---CSCEEEEEEETTTTEEEEEETT---------
T ss_pred             CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECC---CCCcceEEEeCCCCEEEEEECC---------
Confidence             1 112333443  678999874   5788888765  22221111   112234444  36788887431         


Q ss_pred             cccCcceeEeecCCC
Q 021080          278 IKPMSDVDVLTVGAE  292 (317)
Q Consensus       278 ~~~~~~v~~yd~~~~  292 (317)
                         ...|+++|++..
T Consensus       224 ---~~~I~~~~~dG~  235 (349)
T 3v64_C          224 ---HHVIERANLDGS  235 (349)
T ss_dssp             ---TTEEEEEETTSC
T ss_pred             ---CCEEEEEeCCCC
Confidence               235666666543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=80.91  E-value=23  Score=29.38  Aligned_cols=53  Identities=13%  Similarity=0.209  Sum_probs=29.9

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEE--C--CEEEEEecCceeEEEEeCCCC
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--G--GKVHVLHKGLSTVQVLDHMGL  201 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~--~--g~lyv~gG~~~~v~~yd~~~~  201 (317)
                      ..+.+||.++++|..+..+... ......+.+  +  +.+.+.|+....+..||..+.
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             CEEEEEEcCCCceEEEEEeecC-CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence            4566777777766554332211 112223333  2  566677776677888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	317
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	4e-06
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	4e-04
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	0.001

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 4e-06
 Identities = 39/277 (14%), Positives = 73/277 (26%), Gaps = 46/277 (16%)

Query: 64  DPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDG 123
              +  + Y+P    W+ L  L       +        G L+ +GG +++ D  T     
Sbjct: 16  QSLSYLEAYNPSNGTWLRLADLQVP---RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 72

Query: 124 SFATNE--------------------VWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI 163
                                     V        G +      +  E Y+PE+D W  +
Sbjct: 73  DCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV 132

Query: 164 PDLHRTHNSACTG------VVIGG--------KVHVLHKGLSTVQVLDHMGLGWTVEDYG 209
             +                  +GG             +   +  +++  M    +     
Sbjct: 133 APMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC 192

Query: 210 WLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVI 269
            L   +              + +   +       A    RR    +      IYV+GG  
Sbjct: 193 VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYD 252

Query: 270 GPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCR 306
           G          +  V+      +  TW +V+ MT  R
Sbjct: 253 GH-------TFLDSVECYDP--DTDTWSEVTRMTSGR 280

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 35/294 (11%), Positives = 65/294 (22%), Gaps = 60/294 (20%)

Query: 70  QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAV----DPLTGDQDGSF 125
             +DP   +     V  +K         +   G++ V GG         D  +       
Sbjct: 55  SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP 114

Query: 126 ATNEVWSYDPVTRGF----------TSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACT 175
                  Y                  S        E+Y P    W  +P+          
Sbjct: 115 DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD 174

Query: 176 G-----------VVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYL 224
                       +    K  V   G ST     +      V+  G  Q    +  D++  
Sbjct: 175 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 234

Query: 225 MS-------------------------------HGLIIKQHRDVRKVVASASEFRRRIGF 253
            +                                        +           R     
Sbjct: 235 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTS 294

Query: 254 AMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRG 307
            ++  G   ++ GG         D  P+   ++     E+ T+ + +P +  R 
Sbjct: 295 VVLPDG-STFITGGQRRG-IPFEDSTPVFTPEIYV--PEQDTFYKQNPNSIVRV 344

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 17/127 (13%), Positives = 30/127 (23%), Gaps = 31/127 (24%)

Query: 74  PLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133
           P    W     LP      A   +  T+G++ +                          Y
Sbjct: 6   PGLGRWGPTIDLPIVPAAAA---IEPTSGRVLMWSS-----------------------Y 39

Query: 134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI---GGKVHVLHKGL 190
                G +    +      +DP   +          H+  C G+ +   G  V       
Sbjct: 40  RNDAFGGSPGGIT--LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA 97

Query: 191 STVQVLD 197
               + D
Sbjct: 98  KKTSLYD 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.94
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.92
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.87
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.78
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.99
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.87
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.35
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.1
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.71
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	96.5
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	96.32
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.14
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.06
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.05
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.94
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	95.56
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	95.34
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	95.22
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.11
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.4
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	94.37
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	93.86
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	93.79
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.73
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	93.44
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	93.11
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	92.88
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.73
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	92.01
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	91.39
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	91.35
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	91.17
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	90.93
d1tbga_	340	beta1-subunit of the signal-transducing G protein	90.88
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	90.81
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	90.25
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	89.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	89.38
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	89.23
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	88.74
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	87.92
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	87.51
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	87.48
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	87.41
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	87.03
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	86.66
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	86.45
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	86.43
d1hxna_	210	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	85.12
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	85.11
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	82.43
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	81.8
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	80.62
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	80.24
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	80.06

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=258.42  Aligned_cols=237  Identities=19%  Similarity=0.325  Sum_probs=203.0

Q ss_pred             CceEEEEEeCC---CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCccccccee
Q 021080           55 ENLLCVCAFDP---ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW  131 (317)
Q Consensus        55 ~~~l~v~gg~~---~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~  131 (317)
                      +..|||+||..   .+++++||+++++|.+++++|.+   |.+|++++++++|||+||.....       .+...++++|
T Consensus         4 g~~iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~---R~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~~~~   73 (288)
T d1zgka1           4 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP---RSGLAGCVVGGLLYAVGGRNNSP-------DGNTDSSALD   73 (288)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC---CBSCEEEEETTEEEEECCEEEET-------TEEEECCCEE
T ss_pred             CCEEEEECCcCCCCCceEEEEECCCCeEEECCCCCCc---cceeEEEEECCEEEEEeCcccCC-------CCccccchhh
Confidence            56899999943   67899999999999999999986   99999999999999999975321       2345678999


Q ss_pred             EecccCC---------------------------CCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEE
Q 021080          132 SYDPVTR---------------------------GFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVH  184 (317)
Q Consensus       132 ~~d~~~~---------------------------G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~ly  184 (317)
                      +||+.++                           |........++++.||+.+++|...+.++.+ |..++++++++++|
T Consensus        74 ~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~  152 (288)
T d1zgka1          74 CYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-RIGVGVAVLNRLLY  152 (288)
T ss_dssp             EEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-CBSCEEEEETTEEE
T ss_pred             hcccccccccccccccceecceeccccceeeEEecceecccccceeeeeccccCccccccccccc-cccceeeeeeecce
Confidence            9999887                           2222344678899999999999999999999 99999999999999


Q ss_pred             EEec-----CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC-------cEEEEecCCc--eEEEeccccc
Q 021080          185 VLHK-----GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-------GLIIKQHRDV--RKVVASASEF  247 (317)
Q Consensus       185 v~gG-----~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~-------~~~~~yd~~~--W~~v~~~~~~  247 (317)
                      ++||     ....++.||+.+++|...+..+.   .+++++.++++|++||       ...+.||..+  |+.++.+|  
T Consensus       153 ~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p--  230 (288)
T d1zgka1         153 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK--  230 (288)
T ss_dssp             EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS--
T ss_pred             EecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCcc--
Confidence            9999     45789999999999998876554   5677889999999987       4678888776  99998888  


Q ss_pred             cccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeE
Q 021080          248 RRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQ  314 (317)
Q Consensus       248 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~  314 (317)
                      .+|.+++++.++|+|||+||.+..       ...+++++||++++  +|+++.+||.+|.+ |++|+
T Consensus       231 ~~r~~~~~~~~~~~l~v~GG~~~~-------~~~~~v~~yd~~~~--~W~~~~~~p~~R~~-~~~~~  287 (288)
T d1zgka1         231 HRRSALGITVHQGRIYVLGGYDGH-------TFLDSVECYDPDTD--TWSEVTRMTSGRSG-VGVAV  287 (288)
T ss_dssp             SCCBSCEEEEETTEEEEECCBCSS-------CBCCEEEEEETTTT--EEEEEEECSSCCBS-CEEEE
T ss_pred             CcccceEEEEECCEEEEEecCCCC-------eecceEEEEECCCC--EEEECCCCCCCcEe-EEEEE
Confidence            689999999999999999998665       36789999999999  99999999999998 55553

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-26  Score=198.98  Aligned_cols=215  Identities=17%  Similarity=0.259  Sum_probs=177.3

Q ss_pred             CchhhhhhcCHhHHHhhcChhhHHHHHhcCC--cCceEEEEEeC--------CCCceEEEeCCCCCEeecCCCCcccccc
Q 021080           23 FLHPKLELVSRSWRAAIRSPELFKARQEVGS--SENLLCVCAFD--------PENLWQLYDPLRDLWITLPVLPSKIRHL   92 (317)
Q Consensus        23 ~~~~~~~~v~k~w~~l~~s~~~~~~~~~~~~--~~~~l~v~gg~--------~~~~~~~yd~~~~~W~~~~~~p~~~~~r   92 (317)
                      .++-.+....++|..+   ++++.+|..+++  .++.|||+||.        ..++++.||+.+++|.+++++|.+   |
T Consensus        19 ~~~~~yd~~t~~W~~~---~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~---r   92 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRL---ADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP---R   92 (288)
T ss_dssp             CCEEEEETTTTEEEEC---CCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC---C
T ss_pred             ceEEEEECCCCeEEEC---CCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccce---e
Confidence            3344566778899987   345555655543  48899999982        267999999999999999999986   9


Q ss_pred             CCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCC---------------------------CCCCCcC
Q 021080           93 AHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTR---------------------------GFTSCRK  145 (317)
Q Consensus        93 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------------------G~~~~~~  145 (317)
                      ..+++++++++||++||....           ...+..+.||+.++                           |......
T Consensus        93 ~~~~~~~~~~~i~~~gg~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~  161 (288)
T d1zgka1          93 NRIGVGVIDGHIYAVGGSHGC-----------IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN  161 (288)
T ss_dssp             BTCEEEEETTEEEEECCEETT-----------EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC
T ss_pred             cceeccccceeeEEecceecc-----------cccceeeeeccccCccccccccccccccceeeeeeecceEecCccccc
Confidence            999999999999999997543           25667778888777                           3333455


Q ss_pred             CCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec-----CceeEEEEeCCCCcEEeccCCcc---CCcEEE
Q 021080          146 SISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDYGWL---QGPMAI  217 (317)
Q Consensus       146 ~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~  217 (317)
                      ...++++||+.+++|...+.++.. +..+++++.+++||++||     .....+.||..+++|+.+++++.   .+.++.
T Consensus       162 ~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~  240 (288)
T d1zgka1         162 RLNSAECYYPERNEWRMITAMNTI-RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV  240 (288)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             ccceEEEeeccccccccccccccc-cccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE
Confidence            577899999999999999999999 889999999999999999     45788999999999999986654   577888


Q ss_pred             EcCeEEEEeC-------cEEEEecCCc--eEEEeccccccccccEEEEE
Q 021080          218 VHDSVYLMSH-------GLIIKQHRDV--RKVVASASEFRRRIGFAMIG  257 (317)
Q Consensus       218 ~~~~ly~~g~-------~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~  257 (317)
                      ++|+||++||       +.++.||+++  |+++..||  .+|.++++++
T Consensus       241 ~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p--~~R~~~~~~~  287 (288)
T d1zgka1         241 HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT--SGRSGVGVAV  287 (288)
T ss_dssp             ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS--SCCBSCEEEE
T ss_pred             ECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCC--CCcEeEEEEE
Confidence            9999999998       5799999987  99999999  6788887764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.92  E-value=2.6e-24  Score=193.53  Aligned_cols=222  Identities=14%  Similarity=0.144  Sum_probs=164.8

Q ss_pred             cCceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe-CCEEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080           54 SENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS  132 (317)
Q Consensus        54 ~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  132 (317)
                      .+..+|++||...+.+++||+.+++|..++.|+..   |..|+++++ +++||++||....                   
T Consensus        85 ~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~---r~~~~~~~~~dG~v~v~GG~~~~-------------------  142 (387)
T d1k3ia3          85 GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA---RGYQSSATMSDGRVFTIGGSWSG-------------------  142 (387)
T ss_dssp             TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC---CSSCEEEECTTSCEEEECCCCCS-------------------
T ss_pred             cCCcEEEeecCCCcceeEecCccCccccccccccc---ccccceeeecCCceeeecccccc-------------------
Confidence            47899999998888999999999999999999986   888887766 6799999997432                   


Q ss_pred             ecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCC--------------ceEEEEECCEEEEEecCceeEEEEeC
Q 021080          133 YDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNS--------------ACTGVVIGGKVHVLHKGLSTVQVLDH  198 (317)
Q Consensus       133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~--------------~~~~~~~~g~lyv~gG~~~~v~~yd~  198 (317)
                                 ....+++++||+.+++|+.++.++.+ ..              .......+|++|++||....++.||+
T Consensus       143 -----------~~~~~~v~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~  210 (387)
T d1k3ia3         143 -----------GVFEKNGEVYSPSSKTWTSLPNAKVN-PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS  210 (387)
T ss_dssp             -----------SSCCCCEEEEETTTTEEEEETTSCSG-GGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred             -----------ccccceeeeecCCCCceeecCCCccc-ccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCc
Confidence                       33468899999999999998766433 11              11122337889999887888999999


Q ss_pred             CCCcEEeccCCcc---------CCcEEE---EcCeEEEEeCc----------EEE-----EecCCc--eEEEeccccccc
Q 021080          199 MGLGWTVEDYGWL---------QGPMAI---VHDSVYLMSHG----------LII-----KQHRDV--RKVVASASEFRR  249 (317)
Q Consensus       199 ~~~~W~~~~~~~~---------~~~~~~---~~~~ly~~g~~----------~~~-----~yd~~~--W~~v~~~~~~~~  249 (317)
                      .+..|......+.         ....+.   .++++|++||.          ...     .++...  |..+..||  ..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~  288 (387)
T d1k3ia3         211 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY--FA  288 (387)
T ss_dssp             TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS--SC
T ss_pred             ccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccc--cc
Confidence            9999987754332         111222   37899999971          111     222333  77788888  57


Q ss_pred             cccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEe
Q 021080          250 RIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL  315 (317)
Q Consensus       250 r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~  315 (317)
                      |..++++.+ +|+||++||........ +......+++||++++  +|+++++||.+|.. |++++|
T Consensus       289 r~~~~~~~~~dg~i~v~GG~~~~~~~~-~~~~~~~ve~Ydp~~~--~W~~~~~~~~~R~~-Hs~a~l  351 (387)
T d1k3ia3         289 RTFHTSVVLPDGSTFITGGQRRGIPFE-DSTPVFTPEIYVPEQD--TFYKQNPNSIVRVY-HSISLL  351 (387)
T ss_dssp             CBSCEEEECTTSCEEEECCBSBCCTTC-CCSBCCCCEEEEGGGT--EEEECCCCSSCCCT-TEEEEE
T ss_pred             cccceeeeccCCeEEEECCcccCccCC-CCcEeceEEEEECCCC--eEEECCCCCCcccc-eEEEEE
Confidence            777777777 67999999976443111 1135668999999999  99999999999998 566655

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.87  E-value=7.3e-22  Score=177.28  Aligned_cols=239  Identities=15%  Similarity=0.183  Sum_probs=161.1

Q ss_pred             CHhHHHhhcChhhHHHHHhcC--CcCceEEEEEeCC----------CCceEEEeCCCCCEeecCCCCccccccCCe--e-
Q 021080           32 SRSWRAAIRSPELFKARQEVG--SSENLLCVCAFDP----------ENLWQLYDPLRDLWITLPVLPSKIRHLAHF--G-   96 (317)
Q Consensus        32 ~k~w~~l~~s~~~~~~~~~~~--~~~~~l~v~gg~~----------~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~--~-   96 (317)
                      ..+|...+..|.   .+..++  ..+..|||+||..          ...++.||+.+++|..++.++.+   +..+  + 
T Consensus         8 ~g~W~~~~~~p~---~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~---~~~~~~~~   81 (387)
T d1k3ia3           8 LGRWGPTIDLPI---VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK---HDMFCPGI   81 (387)
T ss_dssp             SCEEEEEEECSS---CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS---CCCSSCEE
T ss_pred             CCccCCcCCCCc---cccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCC---cccceeEE
Confidence            345766544442   222222  3478999999932          23478999999999988776654   4333  3 


Q ss_pred             EEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEE
Q 021080           97 VVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTG  176 (317)
Q Consensus        97 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~  176 (317)
                      ++..+++||++||..                                   .+++++||+.+++|+.+++|+.+ |..|++
T Consensus        82 ~~~~~g~i~v~Gg~~-----------------------------------~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~  125 (387)
T d1k3ia3          82 SMDGNGQIVVTGGND-----------------------------------AKKTSLYDSSSDSWIPGPDMQVA-RGYQSS  125 (387)
T ss_dssp             EECTTSCEEEECSSS-----------------------------------TTCEEEEEGGGTEEEECCCCSSC-CSSCEE
T ss_pred             EEecCCcEEEeecCC-----------------------------------CcceeEecCccCccccccccccc-ccccce
Confidence            334478999999853                                   25678999999999999999999 888887


Q ss_pred             EEE-CCEEEEEec------CceeEEEEeCCCCcEEeccCCccC---------------CcE--EEEcCeEEEEeC--cEE
Q 021080          177 VVI-GGKVHVLHK------GLSTVQVLDHMGLGWTVEDYGWLQ---------------GPM--AIVHDSVYLMSH--GLI  230 (317)
Q Consensus       177 ~~~-~g~lyv~gG------~~~~v~~yd~~~~~W~~~~~~~~~---------------~~~--~~~~~~ly~~g~--~~~  230 (317)
                      +++ ||++|++||      ..++++.||+.+++|+.++.+...               ...  ...++++|..++  ..+
T Consensus       126 ~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~  205 (387)
T d1k3ia3         126 ATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMN  205 (387)
T ss_dssp             EECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEE
T ss_pred             eeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcE
Confidence            766 789999999      457899999999999998765430               111  122577888776  577


Q ss_pred             EEecCCc--eEEEeccccc-----cccccEEEE--EECCeEEEEeCcccCCCCcee-cccCcceeEeecCCCCCceeecc
Q 021080          231 IKQHRDV--RKVVASASEF-----RRRIGFAMI--GMGDDIYVIGGVIGPDRWNWD-IKPMSDVDVLTVGAERPTWRQVS  300 (317)
Q Consensus       231 ~~yd~~~--W~~v~~~~~~-----~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~-~~~~~~v~~yd~~~~~~~W~~~~  300 (317)
                      +.|++++  |.....++..     ..+.++++.  ..+++||++||.......... .....+++.++.+.+  .|..+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  283 (387)
T d1k3ia3         206 WYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN--TVFASN  283 (387)
T ss_dssp             EEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE--EEECTT
T ss_pred             EecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCC--ceeecc
Confidence            8888887  8877765531     122333332  247999999997654422110 001122334445555  899999


Q ss_pred             cCCCCCCceeeeeEe
Q 021080          301 PMTRCRGTILGCTQL  315 (317)
Q Consensus       301 ~~p~~~~~~~~~~~~  315 (317)
                      +||.+|.. ++.+++
T Consensus       284 ~~p~~r~~-~~~~~~  297 (387)
T d1k3ia3         284 GLYFARTF-HTSVVL  297 (387)
T ss_dssp             CCSSCCBS-CEEEEC
T ss_pred             cccccccc-ceeeec
Confidence            99999998 455443

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.9e-09  Score=62.19  Aligned_cols=40  Identities=20%  Similarity=0.264  Sum_probs=37.2

Q ss_pred             CCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhh
Q 021080            5 IEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPEL   44 (317)
Q Consensus         5 ~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~   44 (317)
                      |..||+|++.+||+.+|.+++.+++.|||+|+.++.++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            5789999999999999999999999999999999888754

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2e-06  Score=60.65  Aligned_cols=47  Identities=21%  Similarity=0.260  Sum_probs=42.7

Q ss_pred             CcCCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhHHHHH
Q 021080            3 ELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQ   49 (317)
Q Consensus         3 ~~~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~~~~~   49 (317)
                      +++..||+||+..||+.|+..++.+++.|||+|+.++.++.+-+...
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~   63 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC   63 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            56889999999999999999999999999999999999988766544

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=1.6e-06  Score=60.95  Aligned_cols=45  Identities=31%  Similarity=0.431  Sum_probs=39.0

Q ss_pred             CcCCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhc-ChhhHHH
Q 021080            3 ELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIR-SPELFKA   47 (317)
Q Consensus         3 ~~~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~-s~~~~~~   47 (317)
                      ++++.||+|++++||+.|+..++.+++.|||+|+.++. ++.+-+.
T Consensus         4 D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~   49 (100)
T d1nexb1           4 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKK   49 (100)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHH
T ss_pred             CchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            46778999999999999999999999999999999875 4665443

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=1.2e-05  Score=58.14  Aligned_cols=44  Identities=27%  Similarity=0.352  Sum_probs=38.3

Q ss_pred             cCCCCc----HHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhHHH
Q 021080            4 LIEGLP----DAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKA   47 (317)
Q Consensus         4 ~~~~Lp----~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~~~   47 (317)
                      ++..||    |||+..||+.|+..++.+++.|||+|+.++.++.+-+.
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~   57 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKK   57 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            445566    69999999999999999999999999999998877544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.10  E-value=0.0091  Score=48.22  Aligned_cols=60  Identities=12%  Similarity=0.124  Sum_probs=36.1

Q ss_pred             cCeEEEEeC----cEEEEecCCceEEEeccccccccccEEEEEE-C-CeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          219 HDSVYLMSH----GLIIKQHRDVRKVVASASEFRRRIGFAMIGM-G-DDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       219 ~~~ly~~g~----~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ++.+|+...    +.++.+|..+.+.+..++.  ...-.+++.- + .+||+.++.+            +.|.+||++++
T Consensus       211 g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~va~spdg~~l~va~~~~------------~~i~v~D~~t~  276 (301)
T d1l0qa2         211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGIAVTPDGKKVYVALSFC------------NTVSVIDTATN  276 (301)
T ss_dssp             SSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTT------------TEEEEEETTTT
T ss_pred             ccccccccccceeeeeeeeecCCCeEEEEEcC--CCCEEEEEEeCCCCEEEEEECCC------------CeEEEEECCCC
Confidence            445665542    5789999888666655542  1111233332 3 4688876632            36889999988

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.71  E-value=0.011  Score=53.70  Aligned_cols=117  Identities=15%  Similarity=0.091  Sum_probs=78.7

Q ss_pred             eEEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCcc-----------CCcEEEEcCeEEEEeC-cEEEEecCCc--
Q 021080          174 CTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWL-----------QGPMAIVHDSVYLMSH-GLIIKQHRDV--  237 (317)
Q Consensus       174 ~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~-----------~~~~~~~~~~ly~~g~-~~~~~yd~~~--  237 (317)
                      .+-++.+|+||+... ...++++|.++++  |+..+....           ....+..++++|+... +.++++|.++  
T Consensus        60 stPiv~~g~vyv~t~-~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~  138 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMS-WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGK  138 (560)
T ss_dssp             CCCEEETTEEEEEEG-GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCC
T ss_pred             eCCEEECCEEEEECC-CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCc
Confidence            355799999999876 5679999999886  985332111           3456677899988875 7899999765  


Q ss_pred             --eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080          238 --RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       238 --W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~  298 (317)
                        |+....-+.........-+..++.+++-+.....       .....|..||.++++..|+-
T Consensus       139 ~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~-------~~~G~v~a~D~~TG~~~W~~  194 (560)
T d1kv9a2         139 AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY-------GVRGFVSAYDADTGKLAWRF  194 (560)
T ss_dssp             EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT-------CCBCEEEEEETTTCCEEEEE
T ss_pred             EEeccCccCcccceeeeeeeeeecCcccccccceec-------cccceEEEEECCCceEEeee
Confidence              8775443321222223446678888764333222       13357899999999888974

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.08  Score=40.61  Aligned_cols=96  Identities=7%  Similarity=0.017  Sum_probs=57.0

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcE---EeccCCc-c----CCcEEEE---cCeEEEEeCcEEEEecCCce-------EEE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGW---TVEDYGW-L----QGPMAIV---HDSVYLMSHGLIIKQHRDVR-------KVV  241 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W---~~~~~~~-~----~~~~~~~---~~~ly~~g~~~~~~yd~~~W-------~~v  241 (317)
                      ++++|++-|  +..++|+..+...   ..+.... +    ...+|..   ++++|++-|+..+.||..+=       +.+
T Consensus        64 ~~~~yffkg--~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~~y~~y~~~~~~~~~~~pk~I  141 (192)
T d1pexa_          64 HDLIFIFRG--RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRLI  141 (192)
T ss_dssp             TTEEEEEET--TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETTEEEEEETTTTEECSSCCCBH
T ss_pred             CCEEEEEcC--CEEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCCEEEEEcCccccccCCCcEEH
Confidence            788999866  4678887654332   1222211 1    2334433   58999999999999986541       222


Q ss_pred             ec-cccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          242 AS-ASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       242 ~~-~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .. .+....+..+++ ..+|++|++-|              +..+.||..+.
T Consensus       142 ~~~w~gvp~~vdAa~-~~~g~~YfF~g--------------~~y~r~~~~~~  178 (192)
T d1pexa_         142 EEDFPGIGDKVDAVY-EKNGYIYFFNG--------------PIQFEYSIWSN  178 (192)
T ss_dssp             HHHSTTSCSCCSEEE-EETTEEEEEET--------------TEEEEEETTTT
T ss_pred             hhcCCCCCCCceEEE-EeCCEEEEEEC--------------CEEEEEeCCcC
Confidence            21 111112333444 56999999966              26678888776

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.12  Score=39.77  Aligned_cols=96  Identities=6%  Similarity=-0.013  Sum_probs=55.9

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcE---Eecc------CCccCCcEEEE---cCeEEEEeCcEEEEecCCceEEEeccc--
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGW---TVED------YGWLQGPMAIV---HDSVYLMSHGLIIKQHRDVRKVVASAS--  245 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W---~~~~------~~~~~~~~~~~---~~~ly~~g~~~~~~yd~~~W~~v~~~~--  245 (317)
                      ++++|++-|  +..++|+..+...   ..+.      .......+|..   ++++|++.|+..+.|+..+-+....-|  
T Consensus        67 ~~~~yfFkG--~~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~~y~ry~~~~~~vd~gyPk~  144 (195)
T d1su3a2          67 RDEVRFFKG--NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKM  144 (195)
T ss_dssp             GTEEEEEET--TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETTEEEEEETTTTEECSSCSEE
T ss_pred             CcEEEEECC--cEEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCCEEEEEeccCccccCCcccc
Confidence            689999976  5677887433211   1111      11112233433   469999999999999876532222211  


Q ss_pred             ------cccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          246 ------EFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       246 ------~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                            .......++ ...+|++|++-|              +..+.||..+.
T Consensus       145 I~~~w~Gvp~~iDAA-f~~~g~~YfFkg--------------~~y~r~~~~~~  182 (195)
T d1su3a2         145 IAHDFPGIGHKVDAV-FMKDGFFYFFHG--------------TRQYKFDPKTK  182 (195)
T ss_dssp             HHHHSTTSCSCCSEE-EEETTEEEEEET--------------TEEEEEETTTT
T ss_pred             cccccCCCCCCccEE-EEECCeEEEEEC--------------CEEEEEeCCcC
Confidence                  111233344 456899999977              25677887765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.14  E-value=0.058  Score=43.80  Aligned_cols=56  Identities=5%  Similarity=0.141  Sum_probs=31.5

Q ss_pred             cEEEEecCCceEEEeccccccccccEEEEEE-CC-eEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccC
Q 021080          228 GLIIKQHRDVRKVVASASEFRRRIGFAMIGM-GD-DIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM  302 (317)
Q Consensus       228 ~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~  302 (317)
                      +.+..+|.++.+.+...+.  ......++.- +| +||+ |+.            -++|.+||.++.    +.+..+
T Consensus       260 ~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dG~~l~v-~~~------------~~~i~v~D~~t~----~~v~~i  317 (337)
T d1pbyb_         260 NVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWL-GGA------------LGDLAAYDAETL----EKKGQV  317 (337)
T ss_dssp             SEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEE-ESB------------SSEEEEEETTTC----CEEEEE
T ss_pred             ccEEEEECCCCcEEEEEcC--CCCEEEEEECCCCCEEEE-EeC------------CCcEEEEECCCC----cEEEEE
Confidence            5677888887666555542  2222233322 44 4554 542            136899999865    555544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.06  E-value=0.049  Score=49.39  Aligned_cols=117  Identities=12%  Similarity=0.061  Sum_probs=76.8

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCC-CC--cEEeccCCcc-----------CCcEEEEcCeEEEEeC-cEEEEecCCc--
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHM-GL--GWTVEDYGWL-----------QGPMAIVHDSVYLMSH-GLIIKQHRDV--  237 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~-~~--~W~~~~~~~~-----------~~~~~~~~~~ly~~g~-~~~~~yd~~~--  237 (317)
                      +-++.+|++|+..+..+.++++|.. ++  .|+..+....           ...++..++++|+... +.+++.|.++  
T Consensus        57 tP~v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~  136 (571)
T d2ad6a1          57 APLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGK  136 (571)
T ss_dssp             CCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCCCcEEeeehhhhh
Confidence            4567899999986544679999973 45  4986433221           2345677899998865 7899999876  


Q ss_pred             --eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080          238 --RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       238 --W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~  298 (317)
                        |+.--.-+........+-++++++||+-+.....       .....|..||.++++..|+.
T Consensus       137 ~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~-------~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         137 INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL-------GVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG-------TCCCEEEEEETTTCCEEEEE
T ss_pred             hhccccccccccccceeecCeEeCCeEEEeeccccc-------cccCcEEEEECCCCcEEEEE
Confidence              8753222211122223446788999875443322       23457999999999888964

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.05  E-value=0.18  Score=41.10  Aligned_cols=188  Identities=9%  Similarity=-0.049  Sum_probs=95.1

Q ss_pred             CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcC
Q 021080           66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRK  145 (317)
Q Consensus        66 ~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~  145 (317)
                      ...++.+|+.+++-... .+|..    ....+..-++.+++...                                    
T Consensus        39 ~~~I~r~d~~~g~~~~~-~~~~~----~~~i~~~~dg~l~va~~------------------------------------   77 (295)
T d2ghsa1          39 ERELHELHLASGRKTVH-ALPFM----GSALAKISDSKQLIASD------------------------------------   77 (295)
T ss_dssp             GTEEEEEETTTTEEEEE-ECSSC----EEEEEEEETTEEEEEET------------------------------------
T ss_pred             CCEEEEEECCCCeEEEE-ECCCC----cEEEEEecCCCEEEEEe------------------------------------
Confidence            35788999988765443 33332    11222334667776532                                    


Q ss_pred             CCceeEEeeCCCCceeeCCCCCccC---CCceEEEEECCEEEEEec----CceeEEEEeCCCCcEEeccCCcc-CCcEEE
Q 021080          146 SISQAEMYDPEKDVWVPIPDLHRTH---NSACTGVVIGGKVHVLHK----GLSTVQVLDHMGLGWTVEDYGWL-QGPMAI  217 (317)
Q Consensus       146 ~~~~~~~yd~~t~~W~~~~~~p~~~---r~~~~~~~~~g~lyv~gG----~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~  217 (317)
                        +.+..||+.+++.+.+.......   +.....+--+|.||+..-    .......|....++.+.+..... +...+.
T Consensus        78 --~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~  155 (295)
T d2ghsa1          78 --DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICF  155 (295)
T ss_dssp             --TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEE
T ss_pred             --CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeee
Confidence              34677888888888775443320   222223333677877543    11223334444455444332111 122222


Q ss_pred             E--cCeEEEEeC--cEEEEecCC--c------eEEEeccccccccccEEEEE-ECCeEEEEeCcccCCCCceecccCcce
Q 021080          218 V--HDSVYLMSH--GLIIKQHRD--V------RKVVASASEFRRRIGFAMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDV  284 (317)
Q Consensus       218 ~--~~~ly~~g~--~~~~~yd~~--~------W~~v~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v  284 (317)
                      .  ++.+|+.+.  +.+++|+.+  .      .......+. ....-.+++. -+|.||+..=            ....|
T Consensus       156 s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~-~~g~pdG~~vD~~GnlWva~~------------~~g~V  222 (295)
T d2ghsa1         156 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG-IKGGMDGSVCDAEGHIWNARW------------GEGAV  222 (295)
T ss_dssp             CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-SSSEEEEEEECTTSCEEEEEE------------TTTEE
T ss_pred             cCCCceEEEeecccceeeEeeecccccccccceEEEeccCc-ccccccceEEcCCCCEEeeee------------CCCce
Confidence            2  445888874  788887643  1      111112221 1112234444 3678887520            01268


Q ss_pred             eEeecCCCCCceeecccCCCCCCceeeeeE
Q 021080          285 DVLTVGAERPTWRQVSPMTRCRGTILGCTQ  314 (317)
Q Consensus       285 ~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~  314 (317)
                      .+||++.+  ...++ ++|.++-  .+||.
T Consensus       223 ~~~dp~G~--~~~~i-~lP~~~~--T~~~F  247 (295)
T d2ghsa1         223 DRYDTDGN--HIARY-EVPGKQT--TCPAF  247 (295)
T ss_dssp             EEECTTCC--EEEEE-ECSCSBE--EEEEE
T ss_pred             EEecCCCc--EeeEe-cCCCCce--EEEEE
Confidence            99999876  66665 4666542  45553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.94  E-value=0.033  Score=50.56  Aligned_cols=116  Identities=17%  Similarity=0.120  Sum_probs=74.9

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCcc-----------CCcEEEEcCeEEEEeC-cEEEEecCCc---
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWL-----------QGPMAIVHDSVYLMSH-GLIIKQHRDV---  237 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~-----------~~~~~~~~~~ly~~g~-~~~~~yd~~~---  237 (317)
                      +-++.+|+||+... .+.++++|.++++  |+.-+....           ....+..++++|+... +.++++|.++   
T Consensus        72 tPiv~~g~vyv~t~-~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~  150 (573)
T d1kb0a2          72 TPVVVDGIMYVSAS-WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKE  150 (573)
T ss_dssp             CCEEETTEEEEECG-GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEECCEEEEECC-CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccccccc
Confidence            34678999998765 4679999999886  985432211           3356677889888874 7899998765   


Q ss_pred             -eEEEecccc-ccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080          238 -RKVVASASE-FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       238 -W~~v~~~~~-~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~  298 (317)
                       |+.-..-.. ........-+.+++++++ |+.....      .....|..||.++++..|+-
T Consensus       151 ~W~~~~~~~~~~~~~~~~~p~v~~~~viv-g~~~~~~------~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         151 VWHQNTFEGQKGSLTITGAPRVFKGKVII-GNGGAEY------GVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             EEEEETTTTCCSSCBCCSCCEEETTEEEE-CCBCTTT------CCBCEEEEEETTTCCEEEEE
T ss_pred             eecccCccCCcceEEeecceEEEeccEEE-eeccccc------cccceEEEEecCCccceeee
Confidence             986532221 011122234667888876 3332221      13457999999999778974

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.21  Score=38.18  Aligned_cols=85  Identities=13%  Similarity=0.052  Sum_probs=47.1

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcE-EeccC-Ccc----CCcEEEE--cCeEEEEeCcEEEEecCCceEEEecccc-----
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGW-TVEDY-GWL----QGPMAIV--HDSVYLMSHGLIIKQHRDVRKVVASASE-----  246 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W-~~~~~-~~~----~~~~~~~--~~~ly~~g~~~~~~yd~~~W~~v~~~~~-----  246 (317)
                      ++++|++-|  +..++|+-.+-.. ..+.. ..+    ...++..  ++++|++-|+..+.||..+-+....-|.     
T Consensus        64 ~~k~yfFkg--~~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG~~y~ryd~~~~~v~~gyPk~i~~~  141 (195)
T d1itva_          64 SKKLFFFSG--RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGRRLWRFDVKAQMVDPRSASEVDRM  141 (195)
T ss_dssp             TCCEEEEET--TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETTEEEEEETTTTEECGGGCEEHHHH
T ss_pred             CCEEEEEec--CEEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEeccEEEEEeCCcccccCCCccchhhh
Confidence            678999866  3567776332111 12222 111    2233333  5799999999999998766332222221     


Q ss_pred             ---ccccccEEEEEECCeEEEEeC
Q 021080          247 ---FRRRIGFAMIGMGDDIYVIGG  267 (317)
Q Consensus       247 ---~~~r~~~~~~~~~~~lyv~GG  267 (317)
                         ...... ++....+++|++-|
T Consensus       142 w~gvp~~id-aAf~~~~~~Yffkg  164 (195)
T d1itva_         142 FPGVPLDTH-DVFQFREKAYFCQD  164 (195)
T ss_dssp             STTSCSSCS-EEEEETTEEEEEET
T ss_pred             cCCCCCCCc-EEEEeCCcEEEEEC
Confidence               112233 34456889999866

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.34  E-value=0.093  Score=40.23  Aligned_cols=95  Identities=7%  Similarity=-0.074  Sum_probs=53.8

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEE---eccCCcc----CCcEEEE-------cCeEEEEeCcEEEEecCCceEEE-ecc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWT---VEDYGWL----QGPMAIV-------HDSVYLMSHGLIIKQHRDVRKVV-ASA  244 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~---~~~~~~~----~~~~~~~-------~~~ly~~g~~~~~~yd~~~W~~v-~~~  244 (317)
                      ++++|++-|  +..++|+..+....   .+...++    ...++..       ++++|++.|+..+.||..+-... ...
T Consensus        59 ~~~~yfFkG--~~yw~y~~~~~~~gyPk~i~~~~~glp~~iDAA~~~~~~~~~~~~~yfFkg~~yw~yd~~~~~~~~~~w  136 (192)
T d1qhua1          59 HTSVYLIKG--DKVWVYTSEKNEKVYPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQGNRKWFWDLTTGTKKERSW  136 (192)
T ss_dssp             TTEEEEEET--TEEEEECC-------CEEHHHHSTTCCSSCCEEEEECBBTBSSSEEEEEETTEEEEEETTTTEEEEECC
T ss_pred             CCcEEEEeC--CEEEEEeCCccccCCCcChHHhCCCCCCCceEEEEccccccCCCeEEEEeCCeEEEEeCCCCCcccccc
Confidence            689999977  35778865433321   1211111    2233332       68999999999999987652211 112


Q ss_pred             ccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          245 SEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       245 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      +. .+... +++..+|++|++-|              +..+.||..+.
T Consensus       137 ~g-ip~~d-aA~~~~g~~YfFkg--------------~~y~r~~~~~~  168 (192)
T d1qhua1         137 PA-VGNCT-SALRWLGRYYCFQG--------------NQFLRFNPVSG  168 (192)
T ss_dssp             TT-SCCCS-EEEEETTEEEEEET--------------TEEEEECTTTC
T ss_pred             cC-cCCcc-eeEEeCCcEEEEEC--------------CEEEEEcCCcc
Confidence            21 12222 34456899999966              25567777665

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=95.22  E-value=0.28  Score=39.51  Aligned_cols=52  Identities=15%  Similarity=0.102  Sum_probs=28.5

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCc
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGG  110 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~  110 (317)
                      ++..++.++. .+.+..||..+++-...-.+|..   ..-.+++..  +..+||.+..
T Consensus         7 ~~~~l~~~~~-~~~v~v~D~~t~~~~~t~~~~~~---~~p~~l~~spDG~~l~v~~~~   60 (346)
T d1jmxb_           7 GHEYMIVTNY-PNNLHVVDVASDTVYKSCVMPDK---FGPGTAMMAPDNRTAYVLNNH   60 (346)
T ss_dssp             TCEEEEEEET-TTEEEEEETTTTEEEEEEECSSC---CSSCEEEECTTSSEEEEEETT
T ss_pred             CCcEEEEEcC-CCEEEEEECCCCCEEEEEEcCCC---CCcceEEECCCCCEEEEEECC
Confidence            3344444443 36899999999876543344432   222333332  3457777654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.11  E-value=0.29  Score=44.14  Aligned_cols=119  Identities=16%  Similarity=0.148  Sum_probs=74.0

Q ss_pred             eEEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCcc---------CCcEEEEcCeEEEEeC-cEEEEecCCc----
Q 021080          174 CTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWL---------QGPMAIVHDSVYLMSH-GLIIKQHRDV----  237 (317)
Q Consensus       174 ~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~---------~~~~~~~~~~ly~~g~-~~~~~yd~~~----  237 (317)
                      .+-++.+|+||+... ...++++|.++++  |+.....+.         ....+..++++|+... ..++++|.++    
T Consensus        62 stPiv~~g~vy~~t~-~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG~~~  140 (582)
T d1flga_          62 SQAIVSDGVIYVTAS-YSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVV  140 (582)
T ss_dssp             CCCEEETTEEEEEET-TTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEE
T ss_pred             cCCEEECCEEEEeCC-CCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecCCCeEEEeccccccee
Confidence            345799999999876 4679999998886  985433211         2345667888888764 7899999775    


Q ss_pred             eEEEeccccc-cccccEEEEEEC---CeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080          238 RKVVASASEF-RRRIGFAMIGMG---DDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       238 W~~v~~~~~~-~~r~~~~~~~~~---~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~  298 (317)
                      |+....-+.. ........+..+   ..+.++.|......     .....+..||.++++..|+.
T Consensus       141 W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~-----~~~g~v~a~d~~tG~~~W~~  200 (582)
T d1flga_         141 WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEF-----GVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGG-----CCBCEEEEECTTTCCEEEEE
T ss_pred             eeecccCCCccceeecCceEecCCcEeEEEEEeCcccccc-----ccccceEEecCCCCcEEEEE
Confidence            8765332211 111222223222   35555555433211     23457889999999888864

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.40  E-value=0.26  Score=44.58  Aligned_cols=118  Identities=13%  Similarity=0.063  Sum_probs=71.4

Q ss_pred             eEEEEECCEEEEEecCceeEEEEeC-CCC--cEEeccCCcc-----------CCcEEEEcC------eEEEEe-CcEEEE
Q 021080          174 CTGVVIGGKVHVLHKGLSTVQVLDH-MGL--GWTVEDYGWL-----------QGPMAIVHD------SVYLMS-HGLIIK  232 (317)
Q Consensus       174 ~~~~~~~g~lyv~gG~~~~v~~yd~-~~~--~W~~~~~~~~-----------~~~~~~~~~------~ly~~g-~~~~~~  232 (317)
                      .+-++++|+||+.+...+.++.+|. .++  .|+.-+....           ...++...+      ++|+.. .+.+++
T Consensus        56 ~tPiv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~A  135 (596)
T d1w6sa_          56 GAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAA  135 (596)
T ss_dssp             SCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEE
T ss_pred             eCCEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEe
Confidence            3456899999998654467888885 454  4886543221           122333333      366554 378999


Q ss_pred             ecCCc----eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080          233 QHRDV----RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ  298 (317)
Q Consensus       233 yd~~~----W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~  298 (317)
                      +|.++    |+.-..-+........+-+.++++||+-.+..+.       .....|..||.++++..|+-
T Consensus       136 lda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~-------~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         136 LNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL-------GVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             EETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGG-------TCCCEEEEEETTTCCEEEEE
T ss_pred             eccccCceeccccccccccccccccCCcEECCeEEEeeccccc-------cccCceEEEECCCCcEEEEe
Confidence            99877    7763322211222333446778998874322222       13457899999999888973

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.37  E-value=0.93  Score=36.06  Aligned_cols=118  Identities=9%  Similarity=-0.061  Sum_probs=58.1

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCc--cCCcEEEEcCeEEEEe
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW--LQGPMAIVHDSVYLMS  226 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~--~~~~~~~~~~~ly~~g  226 (317)
                      .+.+||..++.-...-.-+..   ...++..+++..+.|+....+..||..+..-.......  ........++.+.+.+
T Consensus       224 ~i~i~d~~~~~~~~~~~~h~~---~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  300 (355)
T d1nexb2         224 TIRIWDLENGELMYTLQGHTA---LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG  300 (355)
T ss_dssp             CEEEEETTTCCEEEEECCCSS---CCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE
T ss_pred             eEEeeeccccccccccccccc---cccccccccceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEE
Confidence            355666665543222111111   12345566777777776677889998776522111111  1223334466666555


Q ss_pred             C-cEEEEecCCceEEEeccccccccccEEEEEECCeEEEEeCcc
Q 021080          227 H-GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVI  269 (317)
Q Consensus       227 ~-~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~  269 (317)
                      . +.+..||.++-+.+..........-.+++..++.+++.|+.+
T Consensus       301 ~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~d  344 (355)
T d1nexb2         301 SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKD  344 (355)
T ss_dssp             ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEESS
T ss_pred             eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEECC
Confidence            3 788888877644332211101111123334466665555544

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.86  E-value=0.65  Score=35.22  Aligned_cols=53  Identities=6%  Similarity=-0.017  Sum_probs=40.4

Q ss_pred             CCEEEEEecCceeEEEEeCCCCc-----EEeccCCccCCcEEEEcCeEEEEeCcEEEEecCCc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLG-----WTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDV  237 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~-----W~~~~~~~~~~~~~~~~~~ly~~g~~~~~~yd~~~  237 (317)
                      ++++|++-|  +..+.||..++.     |..+++   ..++..-+|++|++.|+..++|+...
T Consensus       110 ~~~~yfFkg--~~yw~yd~~~~~~~~~~w~gip~---~daA~~~~g~~YfFkg~~y~r~~~~~  167 (192)
T d1qhua1         110 DEGILFFQG--NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQGNQFLRFNPVS  167 (192)
T ss_dssp             SSEEEEEET--TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEETTEEEEECTTT
T ss_pred             CCeEEEEeC--CeEEEEeCCCCCcccccccCcCC---cceeEEeCCcEEEEECCEEEEEcCCc
Confidence            789999977  468899988773     544432   23445568999999999999998766

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=93.79  E-value=1.4  Score=35.88  Aligned_cols=188  Identities=10%  Similarity=-0.039  Sum_probs=90.7

Q ss_pred             CceEEEEEeCC------CCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCccc
Q 021080           55 ENLLCVCAFDP------ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFA  126 (317)
Q Consensus        55 ~~~l~v~gg~~------~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~  126 (317)
                      +..+|+.....      ...++.+|+.++.+..+.........-....++..  ++.+||..+.                
T Consensus        28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~----------------   91 (314)
T d1pjxa_          28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----------------   91 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT----------------
T ss_pred             CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC----------------
Confidence            45677654321      35699999999988665322111000111233333  4568887643                


Q ss_pred             ccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccC-CC--ceEEEEECCEEEEEec---------------
Q 021080          127 TNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTH-NS--ACTGVVIGGKVHVLHK---------------  188 (317)
Q Consensus       127 ~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~-r~--~~~~~~~~g~lyv~gG---------------  188 (317)
                                           ..+.++|+.......+.....+. ..  .-.++--+|.||+..-               
T Consensus        92 ---------------------~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          92 ---------------------LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             ---------------------TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             ---------------------CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence                                 22445555554433332221110 01  1122233578888631               


Q ss_pred             CceeEEEEeCCCCcEEeccCCcc-CCcEEEE-c-C----eEEEEeC--cEEEEecCCc-----eEEE-eccccccccccE
Q 021080          189 GLSTVQVLDHMGLGWTVEDYGWL-QGPMAIV-H-D----SVYLMSH--GLIIKQHRDV-----RKVV-ASASEFRRRIGF  253 (317)
Q Consensus       189 ~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~-~-~----~ly~~g~--~~~~~yd~~~-----W~~v-~~~~~~~~r~~~  253 (317)
                      ....++++++.. +...+..... +...+.. + +    .||+.+.  +.+++|+...     +.++ ..++......--
T Consensus       151 ~~G~v~~~~~dg-~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         151 KFGSIYCFTTDG-QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             SCEEEEEECTTS-CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             CCceEEEEeecC-ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence            124677787754 3433322111 1122222 2 2    5888864  7898887432     3332 233311111112


Q ss_pred             EEEE-ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          254 AMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       254 ~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      +++. -+|.|||..-            ..+.|.+||++++
T Consensus       230 GiavD~~GnlyVa~~------------~~g~I~~~dp~~g  257 (314)
T d1pjxa_         230 GMDFDEDNNLLVANW------------GSSHIEVFGPDGG  257 (314)
T ss_dssp             EEEEBTTCCEEEEEE------------TTTEEEEECTTCB
T ss_pred             eeEEecCCcEEEEEc------------CCCEEEEEeCCCC
Confidence            3443 3678998631            1237889999877

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.73  E-value=0.49  Score=42.42  Aligned_cols=116  Identities=19%  Similarity=0.168  Sum_probs=71.0

Q ss_pred             eEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceE
Q 021080           96 GVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACT  175 (317)
Q Consensus        96 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~  175 (317)
                      +-+++++.||+....                 ..++.+|..+.         +.+|.||++............  .....
T Consensus        72 tPiv~~g~vyv~t~~-----------------~~v~AlDa~TG---------~~~W~~~~~~~~~~~~~~~~~--~~~~g  123 (573)
T d1kb0a2          72 TPVVVDGIMYVSASW-----------------SVVHAIDTRTG---------NRIWTYDPQIDRSTGFKGCCD--VVNRG  123 (573)
T ss_dssp             CCEEETTEEEEECGG-----------------GCEEEEETTTT---------EEEEEECCCCCGGGGGGSSSC--SCCCC
T ss_pred             CCEEECCEEEEECCC-----------------CeEEEEeCCCC---------CeEEEeCCCCCcccccccccc--ccccc
Confidence            335789999987643                 34677776552         566677665544332221111  11224


Q ss_pred             EEEECCEEEEEecCceeEEEEeCCCCc--EEeccC-Ccc-----CCcEEEEcCeEEEEeC-------cEEEEecCCc---
Q 021080          176 GVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDY-GWL-----QGPMAIVHDSVYLMSH-------GLIIKQHRDV---  237 (317)
Q Consensus       176 ~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~-~~~-----~~~~~~~~~~ly~~g~-------~~~~~yd~~~---  237 (317)
                      .++.++++|+... ...++++|..+++  |+.... ...     ..+..+++|.+++-..       +.+..||.++   
T Consensus       124 ~~~~~~~v~~~t~-~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~  202 (573)
T d1kb0a2         124 VALWKGKVYVGAW-DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGER  202 (573)
T ss_dssp             CEEETTEEEEECT-TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             ceEECCcEEEEec-ccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccc
Confidence            5678999988754 3578999988876  875421 111     3344667888877432       5789998776   


Q ss_pred             -eEE
Q 021080          238 -RKV  240 (317)
Q Consensus       238 -W~~  240 (317)
                       |+.
T Consensus       203 ~W~~  206 (573)
T d1kb0a2         203 KWRW  206 (573)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence             875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=1.4  Score=34.76  Aligned_cols=133  Identities=13%  Similarity=0.088  Sum_probs=66.7

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEe-ccCCcc---CCcEEEEcCeEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTV-EDYGWL---QGPMAIVHDSVY  223 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~-~~~~~~---~~~~~~~~~~ly  223 (317)
                      ..+.+||..+.+-.....-+   .....++..++.+++.|+....+..||..+.+-.. +.....   .......++.++
T Consensus       197 g~i~~~d~~~~~~~~~~~~~---~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (342)
T d2ovrb2         197 TSIRVWDVETGNCIHTLTGH---QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV  273 (342)
T ss_dssp             SCEEEEETTTCCEEEEECCC---CSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEE
T ss_pred             CeEEEeecccceeeeEeccc---ccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCee
Confidence            35667777665533221111   11223444555666677666779999987765332 221111   112223455555


Q ss_pred             EEeC--cEEEEecCCceEEEeccccc-c-cccc--EEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCC
Q 021080          224 LMSH--GLIIKQHRDVRKVVASASEF-R-RRIG--FAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA  291 (317)
Q Consensus       224 ~~g~--~~~~~yd~~~W~~v~~~~~~-~-~r~~--~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~  291 (317)
                      +.++  +.+..||.++-+.+..++.. . ....  ..+... ++.+++.|+.++..        ...++++|.+.
T Consensus       274 ~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~--------~~~l~~~Df~~  340 (342)
T d2ovrb2         274 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE--------ETKLLVLDFDV  340 (342)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS--------CCEEEEEECCC
T ss_pred             EEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCC--------eeEEEEEeCCC
Confidence            5553  78999988763333333210 1 1111  122222 44566677655442        23567777764

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=1.3  Score=33.44  Aligned_cols=64  Identities=9%  Similarity=0.085  Sum_probs=40.9

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEE-----eccCCcc----C-CcEEEEcCeEEEEeCcEEEEecCCceEEEeccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWT-----VEDYGWL----Q-GPMAIVHDSVYLMSHGLIIKQHRDVRKVVASAS  245 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~-----~~~~~~~----~-~~~~~~~~~ly~~g~~~~~~yd~~~W~~v~~~~  245 (317)
                      ++++|++-|  +..+.||..++.-.     .+...++    . .++...+|.+|++.|+..+.||..+=+.....|
T Consensus       112 ~~~~y~Fkg--~~y~~y~~~~~~~~~~~pk~I~~~w~gvp~~vdAa~~~~g~~YfF~g~~y~r~~~~~~~v~~~~p  185 (192)
T d1pexa_         112 TGKTLLFSG--NQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNGPIQFEYSIWSNRIVRVMP  185 (192)
T ss_dssp             TSEEEEEET--TEEEEEETTTTEECSSCCCBHHHHSTTSCSCCSEEEEETTEEEEEETTEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEeC--CEEEEEcCccccccCCCcEEHhhcCCCCCCCceEEEEeCCEEEEEECCEEEEEeCCcCeEccCCC
Confidence            689999966  56788988766421     1111111    1 233356889999999999999977633333333

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.95  Score=34.33  Aligned_cols=102  Identities=8%  Similarity=0.017  Sum_probs=59.9

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCcEE----eccCCcc----CCcEEEE---cCeEEEEeCcEEEEecCCceE---E
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLGWT----VEDYGWL----QGPMAIV---HDSVYLMSHGLIIKQHRDVRK---V  240 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~----~~~~~~~----~~~~~~~---~~~ly~~g~~~~~~yd~~~W~---~  240 (317)
                      +++..+|.+|++-|  ...++|+.......    .+...++    ..-+|..   ++++|++-|+.++.|+..+..   .
T Consensus        11 Av~~~~G~~y~Fkg--~~ywr~~~~~~~~~~~P~~I~~~w~glp~~IDAAf~~~~~~k~yfFkg~~~~~y~~~~~~~Pk~   88 (195)
T d1itva_          11 AIAEIGNQLYLFKD--GKYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEEPLSKKLFFFSGRQVWVYTGASVLGPRR   88 (195)
T ss_dssp             EEEEETTEEEEEET--TEEEEECCSSSCCCEEEEEHHHHCTTSCSSCSEEEECTTTCCEEEEETTEEEEEETTEEEEEEE
T ss_pred             eEEEeCCEEEEEEC--CEEEEEeCCCCCcCCCcEEeeeecCCCCCCccEEEEECCCCEEEEEecCEEEEEcCccccCCEE
Confidence            35578999999966  45666764433221    1222121    3344432   579999999999999865522   2


Q ss_pred             Eec--cccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          241 VAS--ASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       241 v~~--~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      +..  +|....+..++...-++++|++=|              +..+.||..++
T Consensus        89 i~~~g~p~~~~~idaa~~~~~g~~Y~FkG--------------~~y~ryd~~~~  128 (195)
T d1itva_          89 LDKLGLGADVAQVTGALRSGRGKMLLFSG--------------RRLWRFDVKAQ  128 (195)
T ss_dssp             GGGGTCCTTCCCCCEEEECSTTEEEEEET--------------TEEEEEETTTT
T ss_pred             hhhcCCCCCchheeeEEEcCCCeEEEEec--------------cEEEEEeCCcc
Confidence            222  222122333444444689999966              25678887765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.73  E-value=0.8  Score=40.85  Aligned_cols=118  Identities=16%  Similarity=0.113  Sum_probs=68.9

Q ss_pred             eeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCce
Q 021080           95 FGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSAC  174 (317)
Q Consensus        95 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~  174 (317)
                      .+-+++++.||+....                 ..++.+|..+.         ..+|.||+....=...... .. ....
T Consensus        60 stPiv~~g~vyv~t~~-----------------~~v~AlDa~tG---------~~lW~~~~~~~~~~~~~~~-~~-~~~~  111 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMSW-----------------SRVIAVDAASG---------KELWRYDPEVAKVKARTSC-CD-AVNR  111 (560)
T ss_dssp             CCCEEETTEEEEEEGG-----------------GEEEEEETTTC---------CEEEEECCCCCGGGGGGCT-TC-SCCC
T ss_pred             eCCEEECCEEEEECCC-----------------CeEEEEeCCCC---------CEEEEECCCCCcccccccc-cc-cccc
Confidence            4457889999987753                 34555555441         4445555433211111111 01 1223


Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCcc-----CCcEEEEcCeEEEEeC-------cEEEEecCCc---
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWL-----QGPMAIVHDSVYLMSH-------GLIIKQHRDV---  237 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~-----~~~~~~~~~~ly~~g~-------~~~~~yd~~~---  237 (317)
                      ..+..+++||+... ...++++|..+++  |+.......     ..+..+.++.+++-..       +.+..||.++   
T Consensus       112 ~~~~~~~~v~~~~~-~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~  190 (560)
T d1kv9a2         112 GVALWGDKVYVGTL-DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL  190 (560)
T ss_dssp             CCEEEBTEEEEECT-TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             CcceeCCeEEEEeC-CCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceE
Confidence            45677889888754 4579999998875  875432211     3455667888777542       5789999876   


Q ss_pred             -eEEE
Q 021080          238 -RKVV  241 (317)
Q Consensus       238 -W~~v  241 (317)
                       |+.-
T Consensus       191 ~W~~~  195 (560)
T d1kv9a2         191 AWRFY  195 (560)
T ss_dssp             EEEEE
T ss_pred             Eeeee
Confidence             8753

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=1.9  Score=32.71  Aligned_cols=87  Identities=10%  Similarity=0.032  Sum_probs=47.3

Q ss_pred             ECCEEEEEecCceeEEEEeCCCCcE---EeccCC-cc----CCcEEEE---cCeEEEEeCcEEEEecCCc----e---EE
Q 021080          179 IGGKVHVLHKGLSTVQVLDHMGLGW---TVEDYG-WL----QGPMAIV---HDSVYLMSHGLIIKQHRDV----R---KV  240 (317)
Q Consensus       179 ~~g~lyv~gG~~~~v~~yd~~~~~W---~~~~~~-~~----~~~~~~~---~~~ly~~g~~~~~~yd~~~----W---~~  240 (317)
                      .++++|++-|  +..++|+-.+-..   ..+... .+    ...+|..   ++++|++.|+..+.||..+    .   +.
T Consensus        68 ~~~~~yffkg--~~~~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg~~y~ryd~~~~~vd~~yPk~  145 (200)
T d1gena_          68 QEEKAVFFAG--NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKL  145 (200)
T ss_dssp             TTTEEEEEET--TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETTEEEEEETTTTEECSSCCEE
T ss_pred             CCCeEEEecC--ceEEEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeCcEEEEeccccceeccCccee
Confidence            3778999866  4567776432111   111110 11    2334443   5789999999999998754    1   22


Q ss_pred             Eec-cccccccccEEEEE-ECCeEEEEeC
Q 021080          241 VAS-ASEFRRRIGFAMIG-MGDDIYVIGG  267 (317)
Q Consensus       241 v~~-~~~~~~r~~~~~~~-~~~~lyv~GG  267 (317)
                      +.. .+....+..+++.. .++++|++-|
T Consensus       146 I~~~w~gvp~~idAAf~~~~~g~~Yff~g  174 (200)
T d1gena_         146 IADAWNAIPDNLDAVVDLQGGGHSYFFKG  174 (200)
T ss_dssp             HHHHSSSCCSSCSEEEECTTTCEEEEEET
T ss_pred             hhhccCCCCCCccEEEEecCCCEEEEEEC
Confidence            221 11111333344443 2689999866

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=2.8  Score=33.57  Aligned_cols=87  Identities=11%  Similarity=-0.015  Sum_probs=45.9

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE--cCeEEEEeC--cEEEEecCCceEEEeccccccccccEEE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV--HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAM  255 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~  255 (317)
                      +++..++|+....+..||..+..-............+..  ++++++.++  +.+..||.+..+.+..... .... ..+
T Consensus       235 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v-~~~  312 (337)
T d1gxra_         235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSV-LSC  312 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSCE-EEE
T ss_pred             cccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC-CCCE-EEE
Confidence            455666666667788899877654332211111111111  455555543  6788999887666654432 1111 122


Q ss_pred             E-EECCeEEEEeCc
Q 021080          256 I-GMGDDIYVIGGV  268 (317)
Q Consensus       256 ~-~~~~~lyv~GG~  268 (317)
                      . .-+++.++.||.
T Consensus       313 ~~s~d~~~l~t~s~  326 (337)
T d1gxra_         313 DISVDDKYIVTGSG  326 (337)
T ss_dssp             EECTTSCEEEEEET
T ss_pred             EEeCCCCEEEEEeC
Confidence            2 225677777764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.35  E-value=2.6  Score=33.16  Aligned_cols=85  Identities=8%  Similarity=-0.015  Sum_probs=51.1

Q ss_pred             ECCEEEEEecCceeEEEEeCCCCcEEeccCCc-c--CCcEEE-EcCeEEEEeC---cEEEEecCCc-eE--EEecccccc
Q 021080          179 IGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW-L--QGPMAI-VHDSVYLMSH---GLIIKQHRDV-RK--VVASASEFR  248 (317)
Q Consensus       179 ~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~-~--~~~~~~-~~~~ly~~g~---~~~~~yd~~~-W~--~v~~~~~~~  248 (317)
                      -++.+|+.......|..||+..+....+...- .  +..+++ -+|.||+.+.   ..+..|+++. +.  ......  .
T Consensus       166 ~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~--~  243 (279)
T d1q7fa_         166 DKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVK--H  243 (279)
T ss_dssp             SSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSC--C
T ss_pred             cceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCC--C
Confidence            35789999887778999999877666554211 1  223333 2678999974   3688998765 32  222211  1


Q ss_pred             ccccEEEEEE-CCeEEEEe
Q 021080          249 RRIGFAMIGM-GDDIYVIG  266 (317)
Q Consensus       249 ~r~~~~~~~~-~~~lyv~G  266 (317)
                      . ..++++.. +|.|||..
T Consensus       244 ~-~p~~vav~~dG~l~V~~  261 (279)
T d1q7fa_         244 A-QCFDVALMDDGSVVLAS  261 (279)
T ss_dssp             S-CEEEEEEETTTEEEEEE
T ss_pred             C-CEeEEEEeCCCcEEEEe
Confidence            1 22344433 67888864

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.17  E-value=2.7  Score=32.89  Aligned_cols=106  Identities=7%  Similarity=-0.004  Sum_probs=59.1

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCcEEeccCC-ccCCcEEEEcCeEEEEeC--cEEEEecCCceEEEeccccc-ccc
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYG-WLQGPMAIVHDSVYLMSH--GLIIKQHRDVRKVVASASEF-RRR  250 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~-~~~~~~~~~~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~-~~r  250 (317)
                      .....++...+.|+....+..||..+.+-...... .........++.+++.++  +.++.||....+....+... ...
T Consensus       181 ~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~  260 (342)
T d2ovrb2         181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ  260 (342)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCS
T ss_pred             ccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceee
Confidence            34556777777777667789999887663322111 111122233445444443  67888887663333222211 122


Q ss_pred             ccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          251 IGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       251 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .....+..++.+++.|+.+            ..|.+||++++
T Consensus       261 ~~~~~~~~~~~~~~s~s~D------------g~i~iwd~~tg  290 (342)
T d2ovrb2         261 SAVTCLQFNKNFVITSSDD------------GTVKLWDLKTG  290 (342)
T ss_dssp             SCEEEEEECSSEEEEEETT------------SEEEEEETTTC
T ss_pred             eceeecccCCCeeEEEcCC------------CEEEEEECCCC
Confidence            2333455667777777633            26788999887

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.95  E-value=2.5  Score=37.57  Aligned_cols=118  Identities=12%  Similarity=0.054  Sum_probs=70.1

Q ss_pred             eEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceee-CCCCCccCCCce
Q 021080           96 GVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVP-IPDLHRTHNSAC  174 (317)
Q Consensus        96 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~~r~~~  174 (317)
                      +-+++++.|||..+..                ..++.+|...        .=+.+|.|+++.+.-.. .......   ..
T Consensus        57 tP~v~~g~vyv~t~~~----------------~~v~Alda~~--------tG~~~W~~~~~~~~~~~~~~~~~~~---~r  109 (571)
T d2ad6a1          57 APLVIGDMMYVHSAFP----------------NNTYALNLND--------PGKIVWQHKPKQDASTKAVMCCDVV---DR  109 (571)
T ss_dssp             CCEEETTEEEEECSTT----------------TCEEEEETTC--------TTSEEEEECCCCCGGGGGGCTTCSC---CC
T ss_pred             CCEEECCEEEEecCCC----------------CeEEEEeCCC--------CCceEEEecCCCCcccccccccCcC---CC
Confidence            3457899999987532                2355555421        12456666655443211 1111111   12


Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCc--EEec-cCCc----cCCcEEEEcCeEEEEeC-------cEEEEecCCc---
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVE-DYGW----LQGPMAIVHDSVYLMSH-------GLIIKQHRDV---  237 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~-~~~~----~~~~~~~~~~~ly~~g~-------~~~~~yd~~~---  237 (317)
                      ..++.+++||+... ...++++|.++++  |..- ....    ...+-+++++++|+-..       +.+.+||.++   
T Consensus       110 g~a~~~~~i~~~~~-~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~  188 (571)
T d2ad6a1         110 GLAYGAGQIVKKQA-NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             CCEEETTEEEEECT-TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             cceeeCCeEEEEeC-CCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcE
Confidence            35678999987643 4579999999886  7642 2111    13455778899988653       5799999776   


Q ss_pred             -eEEE
Q 021080          238 -RKVV  241 (317)
Q Consensus       238 -W~~v  241 (317)
                       |+.-
T Consensus       189 ~W~~~  193 (571)
T d2ad6a1         189 KWRAF  193 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence             8753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.93  E-value=2.9  Score=32.87  Aligned_cols=129  Identities=12%  Similarity=-0.009  Sum_probs=67.4

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEec-cCCccCCcEEEEcCeEEEEeC
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVE-DYGWLQGPMAIVHDSVYLMSH  227 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~ly~~g~  227 (317)
                      .+..||..+.+-.....-... .........++...+.++....+..||..+..-... .........+..+++..+.++
T Consensus       182 ~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~  260 (355)
T d1nexb2         182 TLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAA  260 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEEC
T ss_pred             eeeeeecccccceeeeecccc-ccccccccccceeeecccccceEEeeeccccccccccccccccccccccccceeeeee
Confidence            456667666554333222222 222222233555666666566788999887764322 111112344455666666654


Q ss_pred             --cEEEEecCCceEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          228 --GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       228 --~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                        +.++.+|.++-...-.... ...........++++++.|.   .          +.|.+||++++
T Consensus       261 ~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~---d----------~~i~vwd~~tg  313 (355)
T d1nexb2         261 ADGSIRGWDANDYSRKFSYHH-TNLSAITTFYVSDNILVSGS---E----------NQFNIYNLRSG  313 (355)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC-TTCCCCCEEEECSSEEEEEE---T----------TEEEEEETTTC
T ss_pred             cccccccccccccceeccccc-CCceEEEEEcCCCCEEEEEe---C----------CEEEEEECCCC
Confidence              6788888876332222221 11222234455677665543   1          26788999887

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.88  E-value=2.9  Score=32.80  Aligned_cols=89  Identities=6%  Similarity=-0.208  Sum_probs=48.4

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCcc-CCcE--EEE--cCeEEEEeC--cEEEEecCCceEEEecccccccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL-QGPM--AIV--HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIG  252 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~-~~~~--~~~--~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~  252 (317)
                      ++.+++.|+....+..||.............. ..++  +..  ++.+.+.++  +.++.||..+++.+..+.. ....-
T Consensus       237 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-H~~~V  315 (340)
T d1tbga_         237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HDNRV  315 (340)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCE
T ss_pred             CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC-CCCCE
Confidence            56677777766678889988776433221111 1222  222  455555553  6799999888777665542 11111


Q ss_pred             EEEEEE-CCeEEEEeCcc
Q 021080          253 FAMIGM-GDDIYVIGGVI  269 (317)
Q Consensus       253 ~~~~~~-~~~lyv~GG~~  269 (317)
                      .+++.. ++++++.||.+
T Consensus       316 ~~l~~s~d~~~l~s~s~D  333 (340)
T d1tbga_         316 SCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             EEEEECTTSSCEEEEETT
T ss_pred             EEEEEeCCCCEEEEEccC
Confidence            122222 55666667643

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=2.5  Score=31.84  Aligned_cols=102  Identities=11%  Similarity=-0.035  Sum_probs=57.4

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCcE--EeccCCcc----CCcEEE-E--cCeEEEEeCcEEEEecCCc-----eEE
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLGW--TVEDYGWL----QGPMAI-V--HDSVYLMSHGLIIKQHRDV-----RKV  240 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~W--~~~~~~~~----~~~~~~-~--~~~ly~~g~~~~~~yd~~~-----W~~  240 (317)
                      +++..+|.+|++-|  ...+..+......  ..+...++    ...+|. .  ++++|++.|+..+.|+..+     -+.
T Consensus        16 Av~~~~G~~y~Fkg--~~~wr~~~~~~~~~p~~i~~~w~glp~~IDAAf~~~~~~~~yfFkG~~y~~y~~~~~~~g~p~~   93 (195)
T d1su3a2          16 AITTIRGEVMFFKD--RFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKD   93 (195)
T ss_dssp             EEEEETTEEEEEET--TEEEECCTTSSSCEEEEGGGTCTTSCSSCCEEEEEGGGTEEEEEETTEEEEEETTEECTTCSEE
T ss_pred             EEEEcCCeEEEEeC--CEEEEeeCCCCccCccchHhhCcCCCCcccceEEecCCcEEEEECCcEEEEEcCCccccCCCcc
Confidence            45578999999977  2344444443332  11222222    333443 3  5899999999999998544     222


Q ss_pred             Ee---ccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          241 VA---SASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       241 v~---~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      +.   .+|....+..+++... ++++|++-|.              ..+.||..++
T Consensus        94 i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~--------------~y~ry~~~~~  135 (195)
T d1su3a2          94 IYSSFGFPRTVKHIDAALSEENTGKTYFFVAN--------------KYWRYDEYKR  135 (195)
T ss_dssp             HHHHHCCCTTCCCCCEEEEETTTTEEEEEETT--------------EEEEEETTTT
T ss_pred             chhhcCCCCCccccccccccCCCCeEEEEeCC--------------EEEEEeccCc
Confidence            21   2232122233333332 5799999772              5677776654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.25  E-value=3.6  Score=32.80  Aligned_cols=65  Identities=14%  Similarity=0.024  Sum_probs=35.9

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEec-cCCcc-----CCcE--EEE--cCeEEEEeC--cEEEEecCCceEEEecc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVE-DYGWL-----QGPM--AIV--HDSVYLMSH--GLIIKQHRDVRKVVASA  244 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~-~~~~~-----~~~~--~~~--~~~ly~~g~--~~~~~yd~~~W~~v~~~  244 (317)
                      ++++++.|+....+..||..++.-... +....     ...+  +..  +++..+.++  +.++.||.++-+.+..+
T Consensus       200 ~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         200 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  276 (311)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            667777777667788999877653221 11100     1112  222  455555553  67889988774444433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=89.85  E-value=3.4  Score=31.89  Aligned_cols=90  Identities=14%  Similarity=0.127  Sum_probs=47.7

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEE-ECC-EEEEEecCceeEEEEeCCCCcEE-eccCCccCCcEEEE-cC-eE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVV-IGG-KVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQGPMAIV-HD-SV  222 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~-~~g-~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~-~~-~l  222 (317)
                      ..+.++|+++++....-+.  + ...+..++ -+| +||+.+.....+..||..+.+-. .++.......++.. ++ .+
T Consensus        12 ~~v~v~D~~t~~~~~~i~~--g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~   88 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPV--G-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQV   88 (301)
T ss_dssp             TEEEEEETTTTEEEEEEEC--S-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEE
T ss_pred             CEEEEEECCCCeEEEEEEC--C-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccc
Confidence            4577888888876543222  2 11222233 244 58887766678999999887632 22221112222222 22 45


Q ss_pred             EEEeC--cEEEEecCCceEE
Q 021080          223 YLMSH--GLIIKQHRDVRKV  240 (317)
Q Consensus       223 y~~g~--~~~~~yd~~~W~~  240 (317)
                      ++.+.  ..+..++...-+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~  108 (301)
T d1l0qa2          89 YVTNMASSTLSVIDTTSNTV  108 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEE
T ss_pred             cccccccceeeeccccccee
Confidence            55443  5666777665333

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=89.38  E-value=4  Score=32.09  Aligned_cols=54  Identities=11%  Similarity=0.012  Sum_probs=33.8

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEE-ECC-EEEEEecCceeEEEEeCCCCc
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVV-IGG-KVHVLHKGLSTVQVLDHMGLG  202 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~-~~g-~lyv~gG~~~~v~~yd~~~~~  202 (317)
                      +++.+||.++++=...-.++.. ..-...++ -|| .+|+.+.....+..||+.+.+
T Consensus        18 ~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~   73 (346)
T d1jmxb_          18 NNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK   73 (346)
T ss_dssp             TEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccCe
Confidence            5788899988864432234333 22222332 255 577877666789999998875

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.23  E-value=4.2  Score=32.19  Aligned_cols=137  Identities=12%  Similarity=-0.040  Sum_probs=70.9

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec--CceeEEEEeCCCCcEEeccCCccCCcEEEE--cCeEE
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK--GLSTVQVLDHMGLGWTVEDYGWLQGPMAIV--HDSVY  223 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~--~~~ly  223 (317)
                      .++++||.++++..+++.  .. +..+.+-.-||+..++.|  ....+..+|..++.-..+............  +++..
T Consensus        24 g~v~v~d~~~~~~~~~~~--~~-~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l  100 (360)
T d1k32a3          24 GQAFIQDVSGTYVLKVPE--PL-RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA  100 (360)
T ss_dssp             TEEEEECTTSSBEEECSC--CS-CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEE
T ss_pred             CeEEEEECCCCcEEEccC--CC-CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeeccccccc
Confidence            468889998888887742  22 322222233787666655  334689999999887766543322112222  44444


Q ss_pred             EEe-C-cEEEEecCCc---eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          224 LMS-H-GLIIKQHRDV---RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       224 ~~g-~-~~~~~yd~~~---W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      +.+ . +.++.++.+.   ...+....   .........-+++.+++.+.........  .....+.+||..++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~la~~~~~~~~~~~~--~~~~~~~v~d~~~~  169 (360)
T d1k32a3         101 VVANDRFEIMTVDLETGKPTVIERSRE---AMITDFTISDNSRFIAYGFPLKHGETDG--YVMQAIHVYDMEGR  169 (360)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECSS---SCCCCEEECTTSCEEEEEEEECSSTTCS--CCEEEEEEEETTTT
T ss_pred             ceeccccccccccccccceeeeeeccc---ccccchhhccceeeeeeeccccccceee--ccccceeeeccccC
Confidence            443 3 6677777665   33332222   1121222233566655544333221100  12235667777765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.74  E-value=4.4  Score=31.75  Aligned_cols=129  Identities=8%  Similarity=0.045  Sum_probs=68.9

Q ss_pred             eeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCcc---CCcEEE-EcCeEEE
Q 021080          149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL---QGPMAI-VHDSVYL  224 (317)
Q Consensus       149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~-~~~~ly~  224 (317)
                      .+..+|.....+..+...... .....++--+|.+|+.......+..||+....-..+.....   +..+++ -++.+|+
T Consensus        94 ~i~~~~~~g~~~~~~~~~~~~-~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v  172 (279)
T d1q7fa_          94 QIQIYNQYGQFVRKFGATILQ-HPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFI  172 (279)
T ss_dssp             EEEEECTTSCEEEEECTTTCS-CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred             ccccccccccceeecCCCccc-ccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEe
Confidence            445566555555544322111 11222333467899987766778899987664443321111   122222 2568999


Q ss_pred             EeC--cEEEEecCCc--eEEEeccccccccccEEEEE-ECCeEEEEeCcccCCCCceecccCcceeEeecCC
Q 021080          225 MSH--GLIIKQHRDV--RKVVASASEFRRRIGFAMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA  291 (317)
Q Consensus       225 ~g~--~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~  291 (317)
                      .+.  +.++.|+.+.  ..++..-.  ....-.+++. -+|.|||....+..           .|.+|+++.
T Consensus       173 ~d~~~~~V~~~d~~G~~~~~~g~~g--~~~~P~giavD~~G~i~Vad~~~~~-----------~v~~f~~~G  231 (279)
T d1q7fa_         173 SDNRAHCVKVFNYEGQYLRQIGGEG--ITNYPIGVGINSNGEILIADNHNNF-----------NLTIFTQDG  231 (279)
T ss_dssp             EEGGGTEEEEEETTCCEEEEESCTT--TSCSEEEEEECTTCCEEEEECSSSC-----------EEEEECTTS
T ss_pred             eeccccceeeeecCCceeeeecccc--cccCCcccccccCCeEEEEECCCCc-----------EEEEECCCC
Confidence            886  6899999876  44443211  1112233443 36789987542211           467787653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=87.92  E-value=4  Score=32.50  Aligned_cols=87  Identities=10%  Similarity=0.036  Sum_probs=54.0

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEE-EEcCeEEEEeCcEEEEecCCc--eEEEeccccc--cccccEE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMA-IVHDSVYLMSHGLIIKQHRDV--RKVVASASEF--RRRIGFA  254 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~-~~~~~ly~~g~~~~~~yd~~~--W~~v~~~~~~--~~r~~~~  254 (317)
                      +|+||++--....|+++|+.+++-+..........++ .-+|.+++...+.+..||+++  .+.+...+..  ..|.+..
T Consensus        29 ~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~  108 (295)
T d2ghsa1          29 SGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDG  108 (295)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecCCCcccceee
Confidence            5788888654567999999988755443221112222 246788888788899998776  7666554321  2344444


Q ss_pred             EEEECCeEEEEe
Q 021080          255 MIGMGDDIYVIG  266 (317)
Q Consensus       255 ~~~~~~~lyv~G  266 (317)
                      .+.-+|++|+-.
T Consensus       109 ~vd~~G~iw~~~  120 (295)
T d2ghsa1         109 RMHPSGALWIGT  120 (295)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EECCCCCEEEEe
Confidence            444467777654

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.51  E-value=4.5  Score=30.42  Aligned_cols=102  Identities=10%  Similarity=-0.008  Sum_probs=56.9

Q ss_pred             EEEEECCEEEEEecCceeEEEEeCCCCcE---EeccCCcc----CCcEEE---EcCeEEEEeCcEEEEecCCc--e---E
Q 021080          175 TGVVIGGKVHVLHKGLSTVQVLDHMGLGW---TVEDYGWL----QGPMAI---VHDSVYLMSHGLIIKQHRDV--R---K  239 (317)
Q Consensus       175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~W---~~~~~~~~----~~~~~~---~~~~ly~~g~~~~~~yd~~~--W---~  239 (317)
                      +++.++|.+|++-|  ...+.++......   ..+...++    ...+|.   .++++|++.|+..+.|+..+  .   +
T Consensus        17 Av~~~~G~~y~Fkg--~~~wr~~~~~~~~~~P~~I~~~w~glp~~IdAA~~~~~~~~~yffkg~~~~~y~~~~~~~gyPk   94 (200)
T d1gena_          17 GIAQIRGEIFFFKD--RFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPK   94 (200)
T ss_dssp             EEEEETTEEEEEET--TEEEEESSTTSCCEEEEEGGGTCTTSCSCCSEEEEETTTTEEEEEETTEEEEEETTEECTTCSE
T ss_pred             EEEecCCeEEEEeC--CEEEEEcCCCCCCCCcEehhhccCCCCCCceEEEEECCCCeEEEecCceEEEEcCcccccCCCc
Confidence            45567999999976  2344443332222   12222222    233443   26689999999999998654  1   2


Q ss_pred             EEec--cccccccccEEEEE-ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          240 VVAS--ASEFRRRIGFAMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       240 ~v~~--~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .+..  +|......-+++.. .++++|++-|              +..+.||..++
T Consensus        95 ~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg--------------~~y~ryd~~~~  136 (200)
T d1gena_          95 PLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG--------------DKFWRYNEVKK  136 (200)
T ss_dssp             EGGGGTCCTTCCCCSEEEEETTTTEEEEEET--------------TEEEEEETTTT
T ss_pred             eehhcCCCCCccceeeEEEECCCCeEEEEeC--------------cEEEEeccccc
Confidence            2222  22111223333332 3689999977              25678887765

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.48  E-value=1.7  Score=34.05  Aligned_cols=89  Identities=9%  Similarity=0.013  Sum_probs=47.9

Q ss_pred             ceeEEeeCCCCceeeCCCCCccCCCceEEEE-ECCEEEEEecCceeEEEEeCCCCcEEeccCCcc--CCcEE--EE--cC
Q 021080          148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVV-IGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL--QGPMA--IV--HD  220 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~-~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~--~~~~~--~~--~~  220 (317)
                      ..+.+||..+++...+..+... ..-.+.+. -+++.++.|+....+..||..++..........  ..++.  ..  ++
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  236 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHP-AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN  236 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECS-SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5678888887765544322211 11112222 255666667666779999988776443222211  11221  11  55


Q ss_pred             eEEEEeC--cEEEEecCCc
Q 021080          221 SVYLMSH--GLIIKQHRDV  237 (317)
Q Consensus       221 ~ly~~g~--~~~~~yd~~~  237 (317)
                      .+++.++  +.++.||.++
T Consensus       237 ~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         237 VRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             SEEEEEETTSCEEEEETTC
T ss_pred             cceEEEcCCCEEEEEECCC
Confidence            5555554  6788888665

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.41  E-value=5.8  Score=31.56  Aligned_cols=59  Identities=10%  Similarity=-0.267  Sum_probs=30.8

Q ss_pred             ECCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE--cCeEEEEeC--cEEEEecCCc
Q 021080          179 IGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV--HDSVYLMSH--GLIIKQHRDV  237 (317)
Q Consensus       179 ~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~  237 (317)
                      .++...+.|+....+..||..+.+=...-...........  ++...+.+.  +.+..||.+.
T Consensus       193 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~  255 (337)
T d1gxra_         193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             ccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccc
Confidence            3566666776667788899877652111111111111111  344444442  6788888766

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.03  E-value=6  Score=31.35  Aligned_cols=98  Identities=7%  Similarity=-0.059  Sum_probs=52.2

Q ss_pred             EEEEecCceeEEEEeCCCCcEEeccCC-ccCCcEEEE--cCeEEEEeC--cEEEEecCCceEEEecccccccc----cc-
Q 021080          183 VHVLHKGLSTVQVLDHMGLGWTVEDYG-WLQGPMAIV--HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRR----IG-  252 (317)
Q Consensus       183 lyv~gG~~~~v~~yd~~~~~W~~~~~~-~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r----~~-  252 (317)
                      +++.|+....+..||..+.+-...-.. ......+..  ++.+++.++  +.+..||....+.+..++....+    .. 
T Consensus       161 ~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~  240 (311)
T d1nr0a1         161 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS  240 (311)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred             eecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccc
Confidence            556666556788899887653322111 111112222  455555543  67888888776555544421111    11 


Q ss_pred             EEEEEE--CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          253 FAMIGM--GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       253 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      ...+.+  +++.++.||.+            ..|.+||.+++
T Consensus       241 V~~~~~s~~~~~l~tgs~D------------g~v~iwd~~t~  270 (311)
T d1nr0a1         241 VFGLTWSPDGTKIASASAD------------KTIKIWNVATL  270 (311)
T ss_dssp             EEEEEECTTSSEEEEEETT------------SEEEEEETTTT
T ss_pred             ccccccCCCCCEEEEEeCC------------CeEEEEECCCC
Confidence            112222  56777777632            25788998877

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.66  E-value=8  Score=32.43  Aligned_cols=106  Identities=15%  Similarity=-0.001  Sum_probs=58.5

Q ss_pred             CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080           55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS  132 (317)
Q Consensus        55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  132 (317)
                      .++++|.-. ....+..+|..+++-...-+..     ..-+.++..  |.++|+.+ ..                     
T Consensus        31 ~~~~~v~~~-d~g~v~v~D~~t~~v~~~~~~g-----~~~~~v~fSpDG~~l~~~s-~d---------------------   82 (432)
T d1qksa2          31 ENLFSVTLR-DAGQIALIDGSTYEIKTVLDTG-----YAVHISRLSASGRYLFVIG-RD---------------------   82 (432)
T ss_dssp             GGEEEEEET-TTTEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEE-TT---------------------
T ss_pred             CcEEEEEEc-CCCEEEEEECCCCcEEEEEeCC-----CCeeEEEECCCCCEEEEEc-CC---------------------
Confidence            445555443 4578999999988875432222     222343333  44566653 21                     


Q ss_pred             ecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEE------CC-EEEEEecCceeEEEEeCCCCcEEe
Q 021080          133 YDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI------GG-KVHVLHKGLSTVQVLDHMGLGWTV  205 (317)
Q Consensus       133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~------~g-~lyv~gG~~~~v~~yd~~~~~W~~  205 (317)
                                     ..+.++|..+.+-..+..++.. . .+..++.      || .||+.+.....+..+|..+.+-..
T Consensus        83 ---------------g~v~~~d~~t~~~~~~~~i~~~-~-~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~  145 (432)
T d1qksa2          83 ---------------GKVNMIDLWMKEPTTVAEIKIG-S-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK  145 (432)
T ss_dssp             ---------------SEEEEEETTSSSCCEEEEEECC-S-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred             ---------------CCEEEEEeeCCCceEEEEEecC-C-CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccccee
Confidence                           3466677766654433333332 2 2222222      45 577776666778899998887543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.45  E-value=7  Score=31.59  Aligned_cols=23  Identities=0%  Similarity=-0.191  Sum_probs=15.9

Q ss_pred             CCEEEEEecCceeEEEEeCCCCc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLG  202 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~  202 (317)
                      ++++++.|+....+..||.....
T Consensus       152 ~~~~l~s~s~D~~v~v~~~~~~~  174 (371)
T d1k8kc_         152 NSVLLAAGSCDFKCRIFSAYIKE  174 (371)
T ss_dssp             TSSEEEEEETTSCEEEEECCCTT
T ss_pred             cccceeccccCcEEEEEeeccCc
Confidence            56677777766678888876554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.43  E-value=5.9  Score=30.85  Aligned_cols=57  Identities=14%  Similarity=-0.017  Sum_probs=33.1

Q ss_pred             ceeEEeeCCCCceee-CCCCCccCCCceEEEEECC-EEEEEecCceeEEEEeCCCCcEE
Q 021080          148 SQAEMYDPEKDVWVP-IPDLHRTHNSACTGVVIGG-KVHVLHKGLSTVQVLDHMGLGWT  204 (317)
Q Consensus       148 ~~~~~yd~~t~~W~~-~~~~p~~~r~~~~~~~~~g-~lyv~gG~~~~v~~yd~~~~~W~  204 (317)
                      ..+.++|.++.+=.. ++.-.....-.+-++.-|| .+|+.+.....|..||..+++..
T Consensus        11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~   69 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL   69 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            577888888775332 2211111011222233355 57788766678999999988754

>d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.12  E-value=2.5  Score=32.24  Aligned_cols=99  Identities=15%  Similarity=0.125  Sum_probs=56.6

Q ss_pred             EECCEEEEEecCceeEEEEeCCCCcEE--eccCCcc----CC-cEEEEcCeEEEEeCcEEEEecCCc-eEEEecccccc-
Q 021080          178 VIGGKVHVLHKGLSTVQVLDHMGLGWT--VEDYGWL----QG-PMAIVHDSVYLMSHGLIIKQHRDV-RKVVASASEFR-  248 (317)
Q Consensus       178 ~~~g~lyv~gG~~~~v~~yd~~~~~W~--~~~~~~~----~~-~~~~~~~~ly~~g~~~~~~yd~~~-W~~v~~~~~~~-  248 (317)
                      ..+|++|++-|  +..++++.....|.  .+...++    .. ++...++++|++.|+.++.|.... -+.....|.+. 
T Consensus        17 ~~~G~~y~Fkg--~~~wr~~~~~~~~~p~~I~~~W~~lp~~IDAA~~~~~~~yfFkG~~y~~y~~~~~~~~~~GyPk~i~   94 (210)
T d1hxna_          17 DNHGATYVFSG--SHYWRLDTNRDGWHSWPIAHQWPQGPSTVDAAFSWEDKLYLIQDTKVYVFLTKGGYTLVNGYPKRLE   94 (210)
T ss_dssp             CTTSCEEEEET--TEEEESSSSSCTTCCEEGGGTCTTSCSSCSEEEEETTEEEEEETTEEEEEECSSSCEECTTCCEEHH
T ss_pred             CCCCCEEEEEC--CEEEEEcCCCCCCCcccHHHhcCCCCcccceEEEeCCeEEEEecCEEEEEEcCCCcCccCCCCcChh
Confidence            36899999976  34555555444431  2333332    12 333468899999999999996544 33333223210 


Q ss_pred             -----------ccccEEEEE-ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          249 -----------RRIGFAMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       249 -----------~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                                 .+.-+++.. .++++|++-|              +..|.||..+.
T Consensus        95 ~~~g~p~~~~~~~IDAA~~~~~~gk~yffkG--------------~~y~ryd~~~~  136 (210)
T d1hxna_          95 KELGSPPVISLEAVDAAFVCPGSSRLHIMAG--------------RRLWWLDLKSG  136 (210)
T ss_dssp             HHHCCCSSCCCSCCCEEECCTTCCEEEEEET--------------TEEEEEEGGGG
T ss_pred             hccCCCCCCCCCcEeEEEEeCCCCEEEEEEC--------------CEEEEEcCCcC
Confidence                       112233322 2589999976              25678887664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.11  E-value=7.9  Score=30.95  Aligned_cols=196  Identities=13%  Similarity=-0.048  Sum_probs=99.0

Q ss_pred             ceEEEEEeCCCCceEEEeCCCCCEeec-CCCCccccccCCeeEEEe-CCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080           56 NLLCVCAFDPENLWQLYDPLRDLWITL-PVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY  133 (317)
Q Consensus        56 ~~l~v~gg~~~~~~~~yd~~~~~W~~~-~~~p~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  133 (317)
                      ..||+.-- ....++.+||..+..... .....     ..+.++.. ++++||+....                      
T Consensus        51 G~Ly~~D~-~~g~I~ri~p~g~~~~~~~~~~~~-----~p~gla~~~dG~l~va~~~~----------------------  102 (319)
T d2dg1a1          51 GQLFLLDV-FEGNIFKINPETKEIKRPFVSHKA-----NPAAIKIHKDGRLFVCYLGD----------------------  102 (319)
T ss_dssp             SCEEEEET-TTCEEEEECTTTCCEEEEEECSSS-----SEEEEEECTTSCEEEEECTT----------------------
T ss_pred             CCEEEEEC-CCCEEEEEECCCCeEEEEEeCCCC-----CeeEEEECCCCCEEEEecCC----------------------
Confidence            34666532 245788899887765433 22221     11344433 57888875321                      


Q ss_pred             cccCCCCCCCcCCCceeEEeeCCCCceeeC-CCCCccCCCceEEEEECCEEEEEec------CceeEEEEeCCCCcEEec
Q 021080          134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPI-PDLHRTHNSACTGVVIGGKVHVLHK------GLSTVQVLDHMGLGWTVE  206 (317)
Q Consensus       134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~-~~~p~~~r~~~~~~~~~g~lyv~gG------~~~~v~~yd~~~~~W~~~  206 (317)
                                ......+..+|..+.....+ .......+..-.++--+|.+|+..-      ....++.+++.....+.+
T Consensus       103 ----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~  172 (319)
T d2dg1a1         103 ----------FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI  172 (319)
T ss_dssp             ----------SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred             ----------CccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEE
Confidence                      01123455566665554433 2222220222223334778888642      245688899888776654


Q ss_pred             cCCcc-CCcEEEE--cCeEEEEeC--cEEEEecCCc-----eEEEecccccc--ccccEEEEEE-CCeEEEEeCcccCCC
Q 021080          207 DYGWL-QGPMAIV--HDSVYLMSH--GLIIKQHRDV-----RKVVASASEFR--RRIGFAMIGM-GDDIYVIGGVIGPDR  273 (317)
Q Consensus       207 ~~~~~-~~~~~~~--~~~ly~~g~--~~~~~yd~~~-----W~~v~~~~~~~--~r~~~~~~~~-~~~lyv~GG~~~~~~  273 (317)
                      ..... +..++.-  ++.||+.+.  +.+++|+.+.     .......+...  ...--+++.- +|.|||..-      
T Consensus       173 ~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~------  246 (319)
T d2dg1a1         173 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY------  246 (319)
T ss_dssp             EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE------
T ss_pred             eeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc------
Confidence            32222 2223332  346999874  7899887432     22222111100  1112244443 678998742      


Q ss_pred             CceecccCcceeEeecCCCCCceeecccCCC
Q 021080          274 WNWDIKPMSDVDVLTVGAERPTWRQVSPMTR  304 (317)
Q Consensus       274 ~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~  304 (317)
                            ....|.+||++.+  .-.++ .+|.
T Consensus       247 ------~~g~V~~~~p~G~--~l~~i-~~P~  268 (319)
T d2dg1a1         247 ------GQGRVLVFNKRGY--PIGQI-LIPG  268 (319)
T ss_dssp             ------TTTEEEEECTTSC--EEEEE-ECTT
T ss_pred             ------CCCEEEEECCCCc--EEEEE-eCCC
Confidence                  1237889998754  33444 3443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.43  E-value=12  Score=33.12  Aligned_cols=119  Identities=13%  Similarity=0.058  Sum_probs=65.8

Q ss_pred             eeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCc-eeeCCCCCccCCCc
Q 021080           95 FGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDV-WVPIPDLHRTHNSA  173 (317)
Q Consensus        95 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~-W~~~~~~p~~~r~~  173 (317)
                      .+=+++++.||+.+...                +.++.+|...        .=+.+|.||++... ...........|  
T Consensus        56 ~tPiv~~g~ly~~t~~~----------------~~v~a~d~~~--------tG~~~W~~~~~~~~~~~~~~~~~~~~R--  109 (596)
T d1w6sa_          56 GAPLVVDGKMYIHTSFP----------------NNTFALGLDD--------PGTILWQDKPKQNPAARAVACCDLVNR--  109 (596)
T ss_dssp             SCCEEETTEEEEECSTT----------------TCEEEEETTC--------TTSEEEEECCCCCGGGGGGCSSCSCCC--
T ss_pred             eCCEEECCEEEEeeCCC----------------CcEEEEeCCC--------CCCEEEEecCCCCcccccccccccccc--
Confidence            33458899999987532                2355555321        12566777776542 111111111101  


Q ss_pred             eEEEEECC------EEEEEecCceeEEEEeCCCCc--EEeccC-Cc----cCCcEEEEcCeEEEEeC-------cEEEEe
Q 021080          174 CTGVVIGG------KVHVLHKGLSTVQVLDHMGLG--WTVEDY-GW----LQGPMAIVHDSVYLMSH-------GLIIKQ  233 (317)
Q Consensus       174 ~~~~~~~g------~lyv~gG~~~~v~~yd~~~~~--W~~~~~-~~----~~~~~~~~~~~ly~~g~-------~~~~~y  233 (317)
                       .+++.++      +||+. .....++++|.++++  |+.... ..    ...+-.+++|++|+-..       +.+..|
T Consensus       110 -Gv~~~~~~~~~~~~v~~~-t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~  187 (596)
T d1w6sa_         110 -GLAYWPGDGKTPALILKT-QLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAY  187 (596)
T ss_dssp             -CCEEECCCSSSCCEEEEE-CTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEE
T ss_pred             -eeEEecCCCCCceEEEEE-eCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEE
Confidence             2334433      24443 234578899998886  775321 11    13455678899887542       689999


Q ss_pred             cCCc----eEEE
Q 021080          234 HRDV----RKVV  241 (317)
Q Consensus       234 d~~~----W~~v  241 (317)
                      |.++    |+--
T Consensus       188 Da~TG~~~W~~~  199 (596)
T d1w6sa_         188 DVKTGEQVWRAY  199 (596)
T ss_dssp             ETTTCCEEEEEE
T ss_pred             ECCCCcEEEEee
Confidence            9875    8753

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.80  E-value=11  Score=30.07  Aligned_cols=24  Identities=21%  Similarity=-0.068  Sum_probs=17.2

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcE
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGW  203 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W  203 (317)
                      ++.+.+.|+....+..||..+...
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~~~~  239 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSETGFL  239 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCeEEEEcCCCeEEEeecccCcc
Confidence            556667776566788888887764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.62  E-value=12  Score=29.79  Aligned_cols=66  Identities=8%  Similarity=-0.050  Sum_probs=31.5

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCcc-----------CCcE--EEE--cCeEEEEeC--cEEEEecCCceEEEe
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL-----------QGPM--AIV--HDSVYLMSH--GLIIKQHRDVRKVVA  242 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~-----------~~~~--~~~--~~~ly~~g~--~~~~~yd~~~W~~v~  242 (317)
                      +++..+.|+....+..||..+..-........           ...+  +..  ++++.+.++  +.++.||.++.+.+.
T Consensus       265 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~  344 (388)
T d1erja_         265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL  344 (388)
T ss_dssp             TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence            56666667666778888887654321111100           0111  111  445444443  788999988755555


Q ss_pred             ccc
Q 021080          243 SAS  245 (317)
Q Consensus       243 ~~~  245 (317)
                      .+.
T Consensus       345 ~l~  347 (388)
T d1erja_         345 MLQ  347 (388)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.24  E-value=5.4  Score=32.35  Aligned_cols=88  Identities=8%  Similarity=-0.000  Sum_probs=47.7

Q ss_pred             ECCEEEEEecCceeEEEEeCCCCcEEeccCCccC-CcEE---EE-cCeEEEEeC--cEEEEecCCc--eEEEeccccccc
Q 021080          179 IGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ-GPMA---IV-HDSVYLMSH--GLIIKQHRDV--RKVVASASEFRR  249 (317)
Q Consensus       179 ~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~-~~~~---~~-~~~ly~~g~--~~~~~yd~~~--W~~v~~~~~~~~  249 (317)
                      -+|++.++|+....|..||..++++..+..+..+ .++.   .. ++++.+.++  +.++.+|.+.  |+....... ..
T Consensus        17 ~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~   95 (371)
T d1k8kc_          17 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-IN   95 (371)
T ss_dssp             TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC-CS
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccc-cc
Confidence            3677777777666799999988888766543221 1221   11 345444443  5677777654  776654442 11


Q ss_pred             cccEEEEEE-CCeEEEEeC
Q 021080          250 RIGFAMIGM-GDDIYVIGG  267 (317)
Q Consensus       250 r~~~~~~~~-~~~lyv~GG  267 (317)
                      +.-..+... +++.+++|+
T Consensus        96 ~~v~~i~~~p~~~~l~~~s  114 (371)
T d1k8kc_          96 RAARCVRWAPNEKKFAVGS  114 (371)
T ss_dssp             SCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccceeec
Confidence            111222222 556666665

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.06  E-value=11  Score=28.90  Aligned_cols=100  Identities=9%  Similarity=-0.079  Sum_probs=53.2

Q ss_pred             CCEEEEEecCceeEEEEeCCCCcEEeccCCccCCc--EEEE--cCeEEEEeC--cEEEEecCCc---eEEEecccccccc
Q 021080          180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGP--MAIV--HDSVYLMSH--GLIIKQHRDV---RKVVASASEFRRR  250 (317)
Q Consensus       180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~--~~~~--~~~ly~~g~--~~~~~yd~~~---W~~v~~~~~~~~r  250 (317)
                      +++++++|+....+..||..+.....+........  ....  ++..++.++  +.++.||..+   ......+.. ...
T Consensus       147 ~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-h~~  225 (299)
T d1nr0a2         147 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF-HTA  225 (299)
T ss_dssp             TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC-CSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            66777788767789999988776544332211111  1222  344444443  6788888655   222222221 011


Q ss_pred             ccEEEEE-ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080          251 IGFAMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE  292 (317)
Q Consensus       251 ~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~  292 (317)
                      .-..+.. -++++++.|+.+            ..|.+||+++.
T Consensus       226 ~v~~l~~s~~~~~l~sgs~d------------g~i~iwd~~~~  256 (299)
T d1nr0a2         226 KVACVSWSPDNVRLATGSLD------------NSVIVWNMNKP  256 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETT------------SCEEEEETTCT
T ss_pred             ccccccccccccceEEEcCC------------CEEEEEECCCC
Confidence            1112222 266777777743            25788998876