Citrus Sinensis ID: 021086

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
MDGVKRWRWWAVFILGALIGSQFACGGGNDSTKANHEALVSRIAFGSCANQTAPQPIWDAIIKFDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWKNVPRFVPTSQDEMNFKYHIIKNHPAYSRLRHNLNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQAVEKAVPAPFHFVVRFLAWWTPSTMRVIGKNCRHRSCTYGMRVIFSL
cccccccHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHcccEEEEEccEEEcccccHHHHHHcccccccccccccccccccccHHHccHHHcccccccccccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccHHHHHHHHHHHccccccEEEEEEcEEEEEccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccEEEEEEccccccccccccccccccEEEEEEEcccEEEEcccccEEEccccccEEEEEc
cccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccccHHHHHHHHccccEEEEEccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccEEEEEEEcccccEEEEEEEcccccccccccccccccHHHHHHHHHHHccccccEEEEEEEEEEcccccccccccccHHHHcccHHHHHHHHHHHHHcccccEEEEEccccHHHHEcccccccccEEEEEccccccccccccccccHHHHHHHHHHcccccEEEccccEEEEEEcccEEEEEc
MDGVKRWRWWAVFILGALIgsqfacgggndstkANHEALVSRIAfgscanqtapqpiWDAIikfdpqvfiwmgdniygdikrpskmfgkertigpwknvprfvptsqdemnfkyhiiknhpaysrlrhnlntkagiytsytfgpvgrQIKIILLdtryhrdplssdgtilgstQWTWLekelngpssAITIIVSSIQVISNlsattgplfymeswgrfpkERDRLFQLIADSkrngvffisgdvhfgeitrydcdvgyalyditssgltqavekavpapfHFVVRFLAwwtpstmrvigkncrhrsctygmrVIFSL
MDGVKRWRWWAVFILGALIGSQFACGGGNDSTKANHEALVSRIAFGSCANQTAPQPIWDAIIKFDPQVFIWMGDNIYGDIKRPSKMFgkertigpwknvprfvpTSQDEMNFKYHIIKNHPAYSRLRHNLNTKAGIytsytfgpvGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQAVEKAVPAPFHFVVRFLAWWTPSTmrvigkncrhrsctygmrvifsl
MDGVKRWRWWAVFILGALIGSQFACGGGNDSTKANHEALVSRIAFGSCANQTAPQPIWDAIIKFDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWKNVPRFVPTSQDEMNFKYHIIKNHPAYSRLRHNLNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPssaitiivssiqvisNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQAVEKAVPAPFHFVVRFLAWWTPSTMRVIGKNCRHRSCTYGMRVIFSL
***VKRWRWWAVFILGALIGSQFACGGGNDSTKANHEALVSRIAFGSCANQTAPQPIWDAIIKFDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWKNVPRFVPTSQDEMNFKYHIIKNHPAYSRLRHNLNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQAVEKAVPAPFHFVVRFLAWWTPSTMRVIGKNCRHRSCTYGMRVIF**
*DGVKRWRWWAVFILGALIGSQF*****************SRIAFGSCANQTAPQPIWDAIIKFDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWKNVPRFVPTSQDEMNFKYHIIKNHPAYSRLRHNLNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQAVEKAVPAPFHFVVRFLAWWTPSTMRVIGKNCRHRSCTYGMRVIFSL
MDGVKRWRWWAVFILGALIGSQFACGGGNDSTKANHEALVSRIAFGSCANQTAPQPIWDAIIKFDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWKNVPRFVPTSQDEMNFKYHIIKNHPAYSRLRHNLNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQAVEKAVPAPFHFVVRFLAWWTPSTMRVIGKNCRHRSCTYGMRVIFSL
*DGVKRWRWWAVFILGALIGSQFACG**********EALVSRIAFGSCANQTAPQPIWDAIIKFDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWKNVPRFVPTSQDEMNFKYHIIKNHPAYSRLRHNLNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQAVEKAVPAPFHFVVRFLAWWTPSTMRVIGKNCRHRSCTYGMRVIFSL
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDGVKRWRWWAVFILGALIGSQFACGGGNDSTKANHEALVSRIAFGSCANQTAPQPIWDAIIKFDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWKNVPRFVPTSQDEMNFKYHIIKNHPAYSRLRHNLNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQAVEKAVPAPFHFVVRFLAWWTPSTMRVIGKNCRHRSCTYGMRVIFSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query317 2.2.26 [Sep-21-2011]
P42251583 Alkaline phosphatase D OS yes no 0.337 0.183 0.272 5e-07
>sp|P42251|PPBD_BACSU Alkaline phosphatase D OS=Bacillus subtilis (strain 168) GN=phoD PE=1 SV=3 Back     alignment and function desciption
 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 18/125 (14%)

Query: 136 IYTSYTFGPVGRQIKIILLDTRYHRD-PLSSDG-------------TILGSTQWTWLEKE 181
           +Y  +T+G +       +LDTR +RD   ++DG             T+LG  Q  WL   
Sbjct: 317 LYRHFTYGNLA---SFNVLDTRQYRDDQANNDGNKPPSDESRNPNRTLLGKEQEQWLFNN 373

Query: 182 LNGPSSAITIIVSSIQVIS-NLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFI 240
           L   ++   ++   I     N   +  P++ M+SW  +P +R+R+   I     N V  +
Sbjct: 374 LGSSTAHWNVLAQQIFFAKWNFGTSASPIYSMDSWDGYPAQRERVINFIKSKNLNNVVVL 433

Query: 241 SGDVH 245
           +GDVH
Sbjct: 434 TGDVH 438

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
359491937 529 PREDICTED: uncharacterized protein LOC10 0.958 0.574 0.613 1e-122
297745632 456 unnamed protein product [Vitis vinifera] 0.958 0.666 0.613 1e-122
255539384 438 conserved hypothetical protein [Ricinus 0.949 0.687 0.616 1e-121
224086142 428 predicted protein [Populus trichocarpa] 0.861 0.637 0.663 1e-119
449455663 465 PREDICTED: uncharacterized protein LOC10 0.977 0.666 0.602 1e-117
356499243 477 PREDICTED: uncharacterized protein LOC10 0.946 0.628 0.586 1e-115
297791819 460 predicted protein [Arabidopsis lyrata su 0.886 0.610 0.616 1e-114
334188139 453 calcineurin-like metallo-phosphoesterase 0.876 0.613 0.621 1e-113
15238950 447 calcineurin-like metallo-phosphoesterase 0.880 0.624 0.619 1e-113
13430796 447 unknown protein [Arabidopsis thaliana] 0.880 0.624 0.616 1e-112
>gi|359491937|ref|XP_002274058.2| PREDICTED: uncharacterized protein LOC100249580 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/349 (61%), Positives = 256/349 (73%), Gaps = 45/349 (12%)

Query: 4   VKRWRWWAVFILGALIGSQFACGGGNDSTKANHEALVSRIAFGSCANQTAPQPIWDAIIK 63
           ++ W  W+V ++  +I    A      ST +    LVSRIAFGSCANQ+APQPIW+AII 
Sbjct: 74  LELWLLWSV-VMRVMIALPIAYSAS--STSSQEALLVSRIAFGSCANQSAPQPIWNAIID 130

Query: 64  FDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWKNVPRFVPTSQDEMNFKYHIIKNHPAY 123
           FDPQ+FIW+GDNIYGD++RP K+FGKERTIGPWKNVPRF+P+S+ EM  +Y   K +P Y
Sbjct: 131 FDPQIFIWLGDNIYGDVRRPFKLFGKERTIGPWKNVPRFIPSSEREMQSRYKKTKTNPGY 190

Query: 124 SRLRHNLNT------------------------------------------KAGIYTSYT 141
           SRL  N                                             +AG+YTSYT
Sbjct: 191 SRLLENTKVIGTWDDHDYGLNDAGKEFNGKITSQRLLLDFLDEPQDSPRRKQAGVYTSYT 250

Query: 142 FGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISN 201
           FGPV RQIK+ILLDTRYHRDPL SDG+ILGS+QWTWLE EL GP+SA+TII SSIQVISN
Sbjct: 251 FGPVDRQIKVILLDTRYHRDPLFSDGSILGSSQWTWLESELKGPASALTIIGSSIQVISN 310

Query: 202 LSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALY 261
           LSA TGP+FY+E WGRFPKER+RLF+LIADSKR+GVFFISGDVHFGEITRYDC  GY L+
Sbjct: 311 LSAITGPIFYLECWGRFPKERERLFKLIADSKRDGVFFISGDVHFGEITRYDCATGYPLF 370

Query: 262 DITSSGLTQAVEKAVPAPFHFVVRFLAWWTPSTMRVIGKNCRHRSCTYG 310
           DIT+SG+TQAVEKAVP P +F+VRF+AW  P+TMRV+G++CR +SCTYG
Sbjct: 371 DITASGITQAVEKAVPPPLNFIVRFVAWLAPTTMRVMGQHCRRKSCTYG 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297745632|emb|CBI40797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539384|ref|XP_002510757.1| conserved hypothetical protein [Ricinus communis] gi|223551458|gb|EEF52944.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224086142|ref|XP_002307831.1| predicted protein [Populus trichocarpa] gi|222857280|gb|EEE94827.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449455663|ref|XP_004145571.1| PREDICTED: uncharacterized protein LOC101210375 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356499243|ref|XP_003518451.1| PREDICTED: uncharacterized protein LOC100801460 [Glycine max] Back     alignment and taxonomy information
>gi|297791819|ref|XP_002863794.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297309629|gb|EFH40053.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334188139|ref|NP_001190449.1| calcineurin-like metallo-phosphoesterase-like protein [Arabidopsis thaliana] gi|332007419|gb|AED94802.1| calcineurin-like metallo-phosphoesterase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15238950|ref|NP_199052.1| calcineurin-like metallo-phosphoesterase-like protein [Arabidopsis thaliana] gi|9759473|dbj|BAB10478.1| unnamed protein product [Arabidopsis thaliana] gi|23296303|gb|AAN13036.1| unknown protein [Arabidopsis thaliana] gi|332007418|gb|AED94801.1| calcineurin-like metallo-phosphoesterase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|13430796|gb|AAK26020.1|AF360310_1 unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
UNIPROTKB|Q47VV1369 CPS_4422 "Alkaline phosphatase 0.460 0.395 0.340 9.5e-29
TIGR_CMR|CPS_4422369 CPS_4422 "alkaline phosphatase 0.460 0.395 0.340 9.5e-29
UNIPROTKB|Q0C5F5408 HNE_0308 "Alkaline phosphatase 0.400 0.311 0.335 3.1e-20
UNIPROTKB|Q47VV1 CPS_4422 "Alkaline phosphatase D domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
 Score = 232 (86.7 bits), Expect = 9.5e-29, Sum P(2) = 9.5e-29
 Identities = 61/179 (34%), Positives = 89/179 (49%)

Query:   133 KAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSS------------------------DGT 168
             K GIYT+Y +G    ++ +IL D R++RD LSS                        + +
Sbjct:   153 KNGIYTAYMYGEEHNKVHVILPDLRWNRDKLSSVDRLNYQTKRKPKNMGPYSPSSLKNAS 212

Query:   169 ILGSTQWTWLEKELNGPXXXXXXXXXXXXXXXNLSATTGPLFYMESWGRFPKERDRLFQL 228
             ++G TQW WLEKEL  P                L   TG     ESW  FP +R+RLF L
Sbjct:   213 MIGETQWQWLEKELQKPSKIKVIASSLQL----LPEFTG----WESWANFPHDRERLFAL 264

Query:   229 IADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQAVEKAVPAPFHFVVRFL 287
             I   + NG+  ISGD H+GE+++    + Y L+++TSSGLT+  ++  P   H +  F+
Sbjct:   265 IKKHQVNGIIIISGDTHWGEMSKVSDKLDYPLWEVTSSGLTEEWKEVSPNK-HRIGNFI 322
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
TIGR_CMR|CPS_4422 CPS_4422 "alkaline phosphatase D domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C5F5 HNE_0308 "Alkaline phosphatase homolog" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.4.4LOW CONFIDENCE prediction!
3rd Layer3.1.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
cd07389228 cd07389, MPP_PhoD, Bacillus subtilis PhoD and rela 1e-29
COG3540522 COG3540, PhoD, Phosphodiesterase/alkaline phosphat 2e-14
pfam09423452 pfam09423, PhoD, PhoD-like phosphatase 2e-14
>gnl|CDD|163632 cd07389, MPP_PhoD, Bacillus subtilis PhoD and related proteins, metallophosphatase domain Back     alignment and domain information 
 Score =  112 bits (282), Expect = 1e-29
 Identities = 62/286 (21%), Positives = 82/286 (28%), Gaps = 117/286 (40%)

Query: 42  RIAFGSCANQTAPQPIWDAII-----KFDPQVFIWMGDNIYGDIKRPSKMFGKERTIGP- 95
           R AFGSC    +        +     + DP +F+ +GD IY D          E      
Sbjct: 1   RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEP 60

Query: 96  --------------------------------------------WKNVPRFVPTSQDEMN 111
                                                       W     +V  S     
Sbjct: 61  AHEALTLEEYRERYRQYRSDPDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYA 120

Query: 112 FKYHIIK------NHPAYSRLRHNLNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSS 165
            K    +           S  R     + GIY S+ FG +   + +ILLDTR +RD    
Sbjct: 121 RKAAARQAYLEFQPVRNPSPRRGG---RGGIYRSFRFGDL---VDLILLDTRTYRD---- 170

Query: 166 DGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRL 225
                                                           SW  +P ER+RL
Sbjct: 171 ------------------------------------------------SWDGYPAERERL 182

Query: 226 FQLIADSKRNGVFFISGDVHFGEITRYDCDV---GYALYDITSSGL 268
             L+A  K   V F+SGDVH  E +    D    GY L + TSSGL
Sbjct: 183 LDLLAKRKIKNVVFLSGDVHLAEASDLPLDAPGDGYVLVEFTSSGL 228

PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 228
>gnl|CDD|226070 COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|220234 pfam09423, PhoD, PhoD-like phosphatase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 317
COG3540522 PhoD Phosphodiesterase/alkaline phosphatase D [Ino 100.0
PF09423453 PhoD: PhoD-like phosphatase; InterPro: IPR018946 T 100.0
cd07389228 MPP_PhoD Bacillus subtilis PhoD and related protei 99.98
cd07378277 MPP_ACP5 Homo sapiens acid phosphatase 5 and relat 99.72
cd00839294 MPP_PAPs purple acid phosphatases of the metalloph 99.7
PLN02533427 probable purple acid phosphatase 99.69
KOG2679336 consensus Purple (tartrate-resistant) acid phospha 99.52
PTZ00422394 glideosome-associated protein 50; Provisional 99.52
cd07395262 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, 99.41
cd07396267 MPP_Nbla03831 Homo sapiens Nbla03831 and related p 99.33
KOG1378452 consensus Purple acid phosphatase [Carbohydrate tr 99.32
cd07402240 MPP_GpdQ Enterobacter aerogenes GpdQ and related p 99.29
TIGR03767496 P_acnes_RR metallophosphoesterase, PPA1498 family. 99.18
cd00842296 MPP_ASMase acid sphingomyelinase and related prote 99.15
PRK11148275 cyclic 3',5'-adenosine monophosphate phosphodieste 99.06
cd07401256 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal 98.93
TIGR03768492 RPA4764 metallophosphoesterase, RPA4764 family. Th 98.91
cd08163257 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related 98.84
cd07399214 MPP_YvnB Bacillus subtilis YvnB and related protei 98.71
cd07392188 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel 97.86
cd07393232 MPP_DR1119 Deinococcus radiodurans DR1119 and rela 97.7
cd07383199 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase 97.69
COG1409301 Icc Predicted phosphohydrolases [General function 96.9
KOG1432379 consensus Predicted DNA repair exonuclease SIA1 [G 96.64
TIGR03729239 acc_ester putative phosphoesterase. Members of thi 96.38
cd07400144 MPP_YydB Bacillus subtilis YydB and related protei 96.29
PF00149200 Metallophos: Calcineurin-like phosphoesterase; Int 96.26
cd07385223 MPP_YkuE_C Bacillus subtilis YkuE and related prot 96.05
cd00840223 MPP_Mre11_N Mre11 nuclease, N-terminal metallophos 95.3
cd07388224 MPP_Tt1561 Thermus thermophilus Tt1561 and related 94.69
KOG3770 577 consensus Acid sphingomyelinase and PHM5 phosphate 93.88
cd00838131 MPP_superfamily metallophosphatase superfamily, me 91.68
cd08166195 MPP_Cdc1_like_1 uncharacterized subgroup related t 91.43
cd07404166 MPP_MS158 Microscilla MS158 and related proteins, 91.35
cd07406257 MPP_CG11883_N Drosophila melanogaster CG11883 and 88.44
PF00149200 Metallophos: Calcineurin-like phosphoesterase; Int 87.12
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-50  Score=384.56  Aligned_cols=267  Identities=22%  Similarity=0.365  Sum_probs=219.9

Q ss_pred             ccccCCCCCCCCC--ccceEEEEeeCCCC-CChhHHHHHHhcCCCEEEEeccccccCCCCCCcccCcccccCCCC-----
Q 021086           26 GGGNDSTKANHEA--LVSRIAFGSCANQT-APQPIWDAIIKFDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWK-----   97 (317)
Q Consensus        26 ~~~~~~t~p~~~~--~~~riAf~SC~~~~-~~~~~~~~ia~~~pD~~l~lGD~iY~d~~~~~~~~~~~r~~~~w~-----   97 (317)
                      -.|+|||+|+...  +.+++|+.||++|+ +++++|++|++++||||||+||+||||+..+...-     ...|+     
T Consensus       126 pvGrtrTapa~~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyIYeyg~~~~~~~-----~~~~~~~~~~  200 (522)
T COG3540         126 PVGRTRTAPAPGRAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYEYGPIPDEVS-----LNSWKNVVVT  200 (522)
T ss_pred             cccccccCCCCCCcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCeeeccCCcccccc-----cccccccccC
Confidence            4689999999964  67999999999996 88999999999999999999999999998753210     11233     


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcChhHHHHHhhh------------c----------------------------------
Q 021086           98 NVPRFVPTSQDEMNFKYHIIKNHPAYSRLRHNL------------N----------------------------------  131 (317)
Q Consensus        98 ~~p~~~~~~~~~yr~~Y~~~~~dp~l~~~~~~~------------N----------------------------------  131 (317)
                      +++.++..+++|||.+|+.|++|++||++|+.+            |                                  
T Consensus       201 ~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE~mP  280 (522)
T COG3540         201 QHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYEHMP  280 (522)
T ss_pred             CCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHHHHHHHHHHHHHHhCc
Confidence            356678899999999999999999999999877            2                                  


Q ss_pred             -----C--CCCcEEEEEeCCCCceeEEEEecCCCCCC------CC--------CCCCCCCcHHHHHHHHHHhcCCCCCeE
Q 021086          132 -----T--KAGIYTSYTFGPVGRQIKIILLDTRYHRD------PL--------SSDGTILGSTQWTWLEKELNGPSSAIT  190 (317)
Q Consensus       132 -----~--~~~iY~s~~~G~~g~~v~~~~LDtR~~R~------~~--------~~~~~~LG~~Q~~WL~~~L~~s~a~~k  190 (317)
                           .  ...+||+|.||++   +.|+|||+|+||+      +.        .+..+|||++|.+||+++|..|+++||
T Consensus       281 iR~~~~p~~~~lYR~~tyG~L---a~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~SkatWn  357 (522)
T COG3540         281 IRYSSLPTDGRLYRSFTYGPL---ADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGASKATWN  357 (522)
T ss_pred             cccccCCccceeeeeeccccc---cceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhcchhhh
Confidence                 1  1479999999998   9999999999993      32        245899999999999999999999999


Q ss_pred             EEEecceeecC----CCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccceeeccC-----CCcceE
Q 021086          191 IIVSSIQVISN----LSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCD-----VGYALY  261 (317)
Q Consensus       191 vv~s~vp~~~~----~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~~~-----~~~~~~  261 (317)
                      ||++++||..-    .++.++...+.|+|+||+.+|++||++|++.+++|+|+|+||||.+++..+..+     ...+++
T Consensus       358 Via~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH~~wA~~l~~d~a~~~~~~~f~  437 (522)
T COG3540         358 VIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVHYSWAHDLDPDFAQFEDFAPFW  437 (522)
T ss_pred             hhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhHHHHHhhcCcchhcccccCcee
Confidence            99999998431    122345667899999999999999999999999999999999999999988753     445799


Q ss_pred             EEcCCCcccccccccCCCchhhHHHhhhccc-CceeecCCceeeeccC-CCccc
Q 021086          262 DITSSGLTQAVEKAVPAPFHFVVRFLAWWTP-STMRVIGKNCRHRSCT-YGMRV  313 (317)
Q Consensus       262 eiTSSgl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~g~~~  313 (317)
                      |++|.+++....-  |.           ..+ ..+-++|||+||.+.. -||+.
T Consensus       438 Efv~tsi~sG~~g--p~-----------~~~~~~~l~~np~vkF~~a~~~g~~~  478 (522)
T COG3540         438 EFVSTSINSGGFG--PN-----------DLPDMAILTFNPEVKFNNAPGRGYVL  478 (522)
T ss_pred             eEeeccCcCCCcC--CC-----------cCchhhhhccCceEEeeccccccccc
Confidence            9999988875421  11           111 3456789999998776 88864

>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B Back     alignment and domain information
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain Back     alignment and domain information
>PLN02533 probable purple acid phosphatase Back     alignment and domain information
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00422 glideosome-associated protein 50; Provisional Back     alignment and domain information
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain Back     alignment and domain information
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain Back     alignment and domain information
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family Back     alignment and domain information
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional Back     alignment and domain information
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain Back     alignment and domain information
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family Back     alignment and domain information
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain Back     alignment and domain information
>COG1409 Icc Predicted phosphohydrolases [General function prediction only] Back     alignment and domain information
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only] Back     alignment and domain information
>TIGR03729 acc_ester putative phosphoesterase Back     alignment and domain information
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain Back     alignment and domain information
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11 Back     alignment and domain information
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain Back     alignment and domain information
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain Back     alignment and domain information
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain Back     alignment and domain information
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism] Back     alignment and domain information
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain Back     alignment and domain information
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain Back     alignment and domain information
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
2yeq_A527 Structure Of Phod Length = 527 5e-06
>pdb|2YEQ|A Chain A, Structure Of Phod Length = 527 Back     alignment and structure 
Iteration: 1

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 18/125 (14%)
Query: 136 IYTSYTFGPVGRQIKIILLDTRYHRD-PLSSDG-------------TILGSTQWTWLEKE 181
           +Y  +T+G +       +LDTR +RD   ++DG             T+LG  Q  WL   
Sbjct: 261 LYRHFTYGNLA---SFNVLDTRQYRDDQANNDGNKPPSDESRNPNRTLLGKEQEQWLFNN 317
Query: 182 LNGPXXXXXXXXXXXXXXX-NLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFI 240
           L                   N   +  P++ M+SW  +P +R+R+   I     N V  +
Sbjct: 318 LGSSTAHWNVLAQQIFFAKWNFGTSASPIYSMDSWDGYPAQRERVINFIKSKNLNNVVVL 377
Query: 241 SGDVH 245
           +GDVH
Sbjct: 378 TGDVH 382

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
2yeq_A527 Apased, PHOD, alkaline phosphatase D; hydrolase, p 8e-17
2xmo_A443 LMO2642 protein; phosphodiesterase, hydrolase; 1.7 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis} Length = 527 Back     alignment and structure
 Score = 79.9 bits (196), Expect = 8e-17
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 15/175 (8%)

Query: 96  WKNVPRFVPTSQDEMNFKYHIIKNHPAYSRLRHNLNTKAGIYTSYTFGPVGRQIKIILLD 155
              +P    + +  +  +    + +  +  LR +          Y     G      +LD
Sbjct: 218 ANKIPEKGQSVEAFVLRRAAAYQAYYEHMPLRISSLPNGPDMQLYRHFTYGNLASFNVLD 277

Query: 156 TRYHRDP--------------LSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVIS- 200
           TR +RD                + + T+LG  Q  WL   L   ++   ++   I     
Sbjct: 278 TRQYRDDQANNDGNKPPSDESRNPNRTLLGKEQEQWLFNNLGSSTAHWNVLAQQIFFAKW 337

Query: 201 NLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCD 255
           N   +  P++ M+SW  +P +R+R+   I     N V  ++GDVH    +    D
Sbjct: 338 NFGTSASPIYSMDSWDGYPAQRERVINFIKSKNLNNVVVLTGDVHASWASNLHVD 392
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes} Length = 443 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
2yeq_A527 Apased, PHOD, alkaline phosphatase D; hydrolase, p 100.0
2qfp_A424 Purple acid phosphatase; binuclear, Fe-Zn, hydrola 99.79
1xzw_A426 Purple acid phosphatase; hydrolase; HET: NAG FUC M 99.79
1ute_A313 Protein (II purple acid phosphatase); tartrate res 99.68
3tgh_A342 Glideosome-associated protein 50; phosphatase fold 99.64
2xmo_A443 LMO2642 protein; phosphodiesterase, hydrolase; 1.7 99.23
3ib7_A330 ICC protein; metallophosphoesterase, alpha-beta fo 99.18
2nxf_A322 Putative dimetal phosphatase; dinuclear metal cent 99.12
3d03_A274 Phosphohydrolase; glycerophosphodiesterase, metall 98.97
1uf3_A228 Hypothetical protein TT1561; metallo-dependent pho 87.74
1nnw_A252 Hypothetical protein; structural genomics, PSI, pr 87.19
1xm7_A195 Hypothetical protein AQ_1665; structural genomics, 82.82
2yvt_A260 Hypothetical protein AQ_1956; structural genomics, 82.32
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis} Back     alignment and structure
Probab=100.00  E-value=5.2e-45  Score=365.33  Aligned_cols=269  Identities=19%  Similarity=0.264  Sum_probs=214.0

Q ss_pred             cccccCCCCCCCCC--ccceEEEEeeCCCC-CChhHHHHHHhcCCCEEEEeccccccCCCCCCcc-cCcccccCCCCCCC
Q 021086           25 CGGGNDSTKANHEA--LVSRIAFGSCANQT-APQPIWDAIIKFDPQVFIWMGDNIYGDIKRPSKM-FGKERTIGPWKNVP  100 (317)
Q Consensus        25 ~~~~~~~t~p~~~~--~~~riAf~SC~~~~-~~~~~~~~ia~~~pD~~l~lGD~iY~d~~~~~~~-~~~~r~~~~w~~~p  100 (317)
                      +..+++||+|+++.  ..+||||+||+++. +++++|++|++.+||||||+||+||+|+...... .+..|      +.+
T Consensus        99 S~~g~frT~P~~~~~~~~~rfa~~sc~~~~~g~~~~~~~ia~~~~D~vlhlGD~iY~d~~~~~~~~~~~~R------~~~  172 (527)
T 2yeq_A           99 SPVGKTKTLPAPGANVPQMTFAFASCQQYEHGYYTAYKHMAKEKLDLVFHLGDYIYEYGPNEYVSKTGNVR------THN  172 (527)
T ss_dssp             CCCEEEECCCCTTCCCCCEEEEEECCCCGGGCCCHHHHHHTTSCCSEEEECSCSSCCCCTTSSCCTTCCCS------CCS
T ss_pred             CCCceEEcCCCCCCCCCCeEEEEEecCCCCCCccHHHHHHHhcCCCEEEecCCcccCCCCCcccccccccc------cCC
Confidence            46789999998753  58999999999985 8899999999999999999999999998653210 01111      233


Q ss_pred             CCCCCCHHHHHHHHHhhhcChhHHHHHhhh-------------c--C---------------------------------
Q 021086          101 RFVPTSQDEMNFKYHIIKNHPAYSRLRHNL-------------N--T---------------------------------  132 (317)
Q Consensus       101 ~~~~~~~~~yr~~Y~~~~~dp~l~~~~~~~-------------N--~---------------------------------  132 (317)
                      ..++.++++||.+|+++++||+++++++.+             |  .                                 
T Consensus       173 ~~e~~tl~~yr~~y~~~~~dp~lq~~~a~~P~i~~wDDHE~~nn~~~~~~~~~~~~~~f~~rr~~A~~ay~e~~P~~~~~  252 (527)
T 2yeq_A          173 SAEIITLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYANKIPEKGQSVEAFVLRRAAAYQAYYEHMPLRISS  252 (527)
T ss_dssp             SSSCCSHHHHHHHHHHHHTCHHHHHHHHHSEEEECCCSTTTSTTCBTTBCSTTCCHHHHHHHHHHHHHHHHHHSCCCGGG
T ss_pred             cccccCHHHHHHHHHHHhCCHHHHHHHhcCCEEEecccccccCCCCCCcccccCCcccHHHHHHHHHHHHHHhCCCCccc
Confidence            456778999999999999999999998866             1  0                                 


Q ss_pred             -----CCCcEEEEEeCCCCceeEEEEecCCCCCCCC--------------CCCCCCCcHHHHHHHHHHhcCCCCCeEEEE
Q 021086          133 -----KAGIYTSYTFGPVGRQIKIILLDTRYHRDPL--------------SSDGTILGSTQWTWLEKELNGPSSAITIIV  193 (317)
Q Consensus       133 -----~~~iY~s~~~G~~g~~v~~~~LDtR~~R~~~--------------~~~~~~LG~~Q~~WL~~~L~~s~a~~kvv~  193 (317)
                           ..++||+|++|++   ++|||||+|+||++.              .+.++|||++|++||+++|++|+++|+||+
T Consensus       253 ~p~~~~~~~y~sf~~G~l---v~~i~LDtR~yr~~~~~~~~~~~~~~~~~~~~~~~lG~~Q~~WL~~~L~~s~a~W~Iv~  329 (527)
T 2yeq_A          253 LPNGPDMQLYRHFTYGNL---ASFNVLDTRQYRDDQANNDGNKPPSDESRNPNRTLLGKEQEQWLFNNLGSSTAHWNVLA  329 (527)
T ss_dssp             CCBTTBCCCCEEEEETTT---EEEEECCSSSSCCCCGGGSSEECCCHHHHCTTCCSSCHHHHHHHHHHHHHCCSSEEEEE
T ss_pred             CCCCCCceEEEEEEcCCc---ceEEEEeccccccccccccccccccccccCCcccccCHHHHHHHHHHHhcCCCCeEEEE
Confidence                 1257999999986   999999999999864              356899999999999999999999999999


Q ss_pred             ecceeecCCC-CCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccceeeccC-----CCcceEEEcCCC
Q 021086          194 SSIQVISNLS-ATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCD-----VGYALYDITSSG  267 (317)
Q Consensus       194 s~vp~~~~~~-~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~~~-----~~~~~~eiTSSg  267 (317)
                      +|+||+.... ...+...+.|+|++|+.+|++|+++|++++++|+|+||||+|.+++.++...     .+..++|+++|+
T Consensus       330 s~~p~~~~~~~~g~~~~~~~D~W~g~~~~R~~Ll~~l~~~~v~n~vvLsGDvH~~~~~~~~~~~~~p~~~~~~~ef~~ss  409 (527)
T 2yeq_A          330 QQIFFAKWNFGTSASPIYSMDSWDGYPAQRERVINFIKSKNLNNVVVLTGDVHASWASNLHVDFEKTSSKIFGAEFVGTS  409 (527)
T ss_dssp             CSSCCSCCCSSCSSSCCEETTSGGGSHHHHHHHHHHHHHTTCCCEEEEECSSSSEEEEEEESSTTCTTSCEEEEEEECCC
T ss_pred             eCCcccccccCCCcccccCccchhccHHHHHHHHHHHHHhCCCCEEEEEcchHHHhHhhccccccCCCCCceEEEEEcCC
Confidence            9999976421 1111234679999999999999999999999999999999999999987643     224589999999


Q ss_pred             cccccccc-cCCCchhhHHHhhhcccCceeecCCceeeeccCCCcccc
Q 021086          268 LTQAVEKA-VPAPFHFVVRFLAWWTPSTMRVIGKNCRHRSCTYGMRVI  314 (317)
Q Consensus       268 l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  314 (317)
                      +++..... .+.   ..         ..+...|||++|.+..+||..+
T Consensus       410 i~s~~~g~~~~~---~~---------~~~~~~np~~~~~~~~~Gy~~v  445 (527)
T 2yeq_A          410 ITSGGNGADKRA---DT---------DQILKENPHIQFFNDYRGYVRC  445 (527)
T ss_dssp             SSTTCSCBSBCT---TH---------HHHHHHCTTEEEEEBCEEEEEE
T ss_pred             eeCCCCcccchh---hh---------hhhhhcCCcceeeeCCCCEEEE
Confidence            98865311 110   00         1123479999998889999865
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A* Back     alignment and structure
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1 Back     alignment and structure
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A* Back     alignment and structure
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7} Back     alignment and structure
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes} Back     alignment and structure
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A Back     alignment and structure
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12 Back     alignment and structure
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A Back     alignment and structure
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Back     alignment and structure
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A Back     alignment and structure
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8 Back     alignment and structure
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 317
d1utea_302 d.159.1.1 (A:) Mammalian purple acid phosphatase { 0.001
>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]} Length = 302 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Purple acid phosphatase-like
domain: Mammalian purple acid phosphatase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 34/219 (15%)

Query: 57  IWDAIIKFDPQVFIWMGDNIYGD------IKRPSKMFGKERTIGPWKNVPRFVPTSQDEM 110
           I   +        + +GDN Y         KR  + F    +    +NVP  V     + 
Sbjct: 33  IATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWHVLAGNHDH 92

Query: 111 NFKYHIIKNHPAYSRLRHNLNTKAGIYT-SYTFGPVGRQIKIILLDTR---------YHR 160
                      AYS++    N  +  Y   +        + I +LDT            +
Sbjct: 93  LGNVS---AQIAYSKISKRWNFPSPYYRLRFKIPRSNVSVAIFMLDTVTLCGNSDDFVSQ 149

Query: 161 DPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPK 220
            P       L  TQ  W++K+L        ++                 + + S      
Sbjct: 150 QPERPRNLALARTQLAWIKKQLAAAKEDYVLVAGH--------------YPVWSIAEHGP 195

Query: 221 ERDRLFQLIADSKRNGV-FFISGDVHFGEITRYDCDVGY 258
               + QL+     + V  ++ G  H  +  + +  +G+
Sbjct: 196 THCLVKQLLPLLTTHKVTAYLCGHDHNLQYLQDENGLGF 234

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
d2qfra2312 Plant purple acid phosphatase, catalytic domain {K 99.72
d1utea_302 Mammalian purple acid phosphatase {Pig (Sus scrofa 99.69
d2hy1a1256 Rv0805 cyclic nucleotide phosphodiesterase {Mycoba 99.08
d3d03a1271 Glycerophosphodiesterase GpdQ {Enterobacter aeroge 98.99
d2nxfa1320 Uncharacterized C17orf48 homolog zgc:64213 {Zebraf 98.84
d2yvta1257 Uncharacterized protein Aq_1956 {Aquifex aeolicus 97.71
d1uf3a_228 Hypothetical protein TT1561 {Thermus thermophilus 97.58
d1s3la_165 Putative phosphodiesterase MJ0936 {Methanococcus j 82.75
d3ck2a1173 Uncharacterized protein SP1879 {Streptococcus pneu 82.27
d1su1a_184 Phosphodiesterase yfcE {Escherichia coli [TaxId: 5 80.28
>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Purple acid phosphatase-like
domain: Plant purple acid phosphatase, catalytic domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=3.1e-17  Score=151.51  Aligned_cols=184  Identities=16%  Similarity=0.178  Sum_probs=113.0

Q ss_pred             cceEEEEeeCCCC-CChhHHHH--HHhcCCCEEEEeccccccCCCCCCcccC-c--ccccCCC-CCCCCCCCCCHHHHH-
Q 021086           40 VSRIAFGSCANQT-APQPIWDA--IIKFDPQVFIWMGDNIYGDIKRPSKMFG-K--ERTIGPW-KNVPRFVPTSQDEMN-  111 (317)
Q Consensus        40 ~~riAf~SC~~~~-~~~~~~~~--ia~~~pD~~l~lGD~iY~d~~~~~~~~~-~--~r~~~~w-~~~p~~~~~~~~~yr-  111 (317)
                      ++|||+++=.... .......+  +++.+|||+||+||.+|+++........ .  .+.+.+. ..+|...+...+|+. 
T Consensus         7 p~~F~v~GD~g~~~~~~~~~~~~~~~~~~pdfvl~~GDl~Y~~~~~~~~~~~wd~~~~~~~~~~~~~P~~~~~GNHD~~~   86 (312)
T d2qfra2           7 PYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEF   86 (312)
T ss_dssp             CEEEEEECSCCSBHHHHHHHHHHHHCSSCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHTTSCEEECCCGGGTCC
T ss_pred             CEEEEEEeeCCCCCchHHHHHHHHHcCCCCCEEEECCCCCcCCCCcccchHHHHHHHHHHHHHhhcceEEEecccccccc
Confidence            6999998432222 12233333  2247899999999999988653210000 0  0000000 123333334444431 


Q ss_pred             ----------HHHHhhhcChhHHHHHhhhcCCCCcEEEEEeCCCCceeEEEEecCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 021086          112 ----------FKYHIIKNHPAYSRLRHNLNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKE  181 (317)
Q Consensus       112 ----------~~Y~~~~~dp~l~~~~~~~N~~~~iY~s~~~G~~g~~v~~~~LDtR~~R~~~~~~~~~LG~~Q~~WL~~~  181 (317)
                                ..|...+.-|.-..     +.....|++|++|+    ++|++||+-..-.        .+.+|.+||+++
T Consensus        87 ~~~~~~~~~~~~~~~~f~~P~~~~-----~~~~~~~Ysf~~g~----v~fi~Lds~~~~~--------~~~~Q~~WL~~~  149 (312)
T d2qfra2          87 APEINETEPFKPFSYRYHVPYEAS-----QSTSPFWYSIKRAS----AHIIVLSSYSAYG--------RGTPQYTWLKKE  149 (312)
T ss_dssp             BGGGTBCSTTHHHHHHCCCCGGGG-----TCSSTTSEEEEETT----EEEEECCTTSCCS--------TTSHHHHHHHHH
T ss_pred             cccccccccccchhhhccCCcccc-----CCCCCceEEEEECC----EEEEEeecccccc--------chHHHHHHHHHH
Confidence                      11222222232110     13345689999998    9999999864332        267899999999


Q ss_pred             hcC---CCCCeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCcccee
Q 021086          182 LNG---PSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITR  251 (317)
Q Consensus       182 L~~---s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~  251 (317)
                      |++   ++.+|+||..|.|+++..         ......-...|+.|.++|.+++|+  ++||||.|..+.+.
T Consensus       150 L~~~~~~~~~w~iv~~H~P~y~~~---------~~~~~~~~~~r~~l~~l~~~~~Vd--lv~~GH~H~YeRt~  211 (312)
T d2qfra2         150 LRKVKRSETPWLIVLMHSPLYNSY---------NHHFMEGEAMRTKFEAWFVKYKVD--VVFAGHVHAYERSE  211 (312)
T ss_dssp             HHTCCTTTCCEEEEECSSCSSCCB---------STTTTTTHHHHHHHHHHHHHTTCS--EEEECSSSSEEEEC
T ss_pred             HHHHhhcCCCEEEEEccccccccC---------CCCcccchhHHHHHHHHHHHcCcE--EEEEccCcceEEEe
Confidence            975   456799999999987532         111222245688999999999998  89999999998764
>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]} Back     information, alignment and structure
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure