Citrus Sinensis ID: 021110

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHccccccEEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHcccccccccccccccHHHccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrnfplsrgtvsgILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFiractpasgedssehghfVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMlsplaipvkmtlfpATKKrirsagssdslaqeggdstqtdplltpsssaaylgsfyetedfsdVEILLAIGegavkekrrprrgedfklgEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNfagrlgsgvlseHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Flexible Loop (DISEMBL)
mrnfplsrgTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAgssdslaqeggdstqtdplltPSSSAAYLGSFYETEDFSDVEILLAigegavkekrrprrgedfklgEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Low Complexity Region (SEG)
MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTlllflalgipliclVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Disordered region (IsUnstruct)
*********TVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPA*******HGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPA**********************************AYLGSFYETEDFSDVEILLAIGEGAV**********DFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAY**
Disordered Region (DISOPRED)
*RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACT************FVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFP*******************************************************************RRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Disordered Region (DISEMBL)
MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTP********HGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKK*********************DPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Disordered Region (DISPRO)
*RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPA********************************************************EGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
24461856	564	nodulin-like protein [Citrus trifoliata]	0.876	0.492	0.989	1e-155
224134428	564	predicted protein [Populus trichocarpa]	0.876	0.492	0.701	1e-110
225443039	564	PREDICTED: uncharacterized membrane prot	0.876	0.492	0.688	1e-103
224054332	564	predicted protein [Populus trichocarpa]	0.870	0.489	0.697	1e-103
449468956	565	PREDICTED: uncharacterized protein LOC10	0.886	0.497	0.641	1e-103
449516077	565	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.886	0.497	0.641	1e-102
147775997	504	hypothetical protein VITISV_014065 [Viti	0.851	0.535	0.693	1e-100
359484689	573	PREDICTED: uncharacterized protein LOC10	0.876	0.485	0.613	5e-98
297839885	563	hypothetical protein ARALYDRAFT_895939 [	0.977	0.550	0.585	3e-97
296084552	512	unnamed protein product [Vitis vinifera]	0.854	0.529	0.607	2e-95

>gi|24461856|gb|AAN62343.1|AF506028_10 nodulin-like protein [Citrus trifoliata]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/278 (98%), Positives = 276/278 (99%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI
Sbjct: 134 MRNFPLSRGTVAGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML
Sbjct: 194 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLAIPVKMTLFPATKKRIRSA SSDSLAQEGGDST TDPLLTPSSSAAYLGSFYETEDF
Sbjct: 254 SPLAIPVKMTLFPATKKRIRSADSSDSLAQEGGDSTPTDPLLTPSSSAAYLGSFYETEDF 313

Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
           SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ
Sbjct: 314 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 373

Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS 278
           IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS
Sbjct: 374 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS 411

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134428|ref|XP_002327403.1| predicted protein [Populus trichocarpa] gi|222835957|gb|EEE74378.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/278 (70%), Positives = 232/278 (83%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTVSGILKG AGI+AA+YTV+Y++VL+ SA+ LLLFL L IP++CL   YFI
Sbjct: 134 MRNFPLSRGTVSGILKGCAGISAAVYTVVYSLVLKGSASNLLLFLTLVIPILCLAMMYFI 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPASGEDSSEH HF+FTQAA + LAIY++  +I    VSLSDA+SYILVAI+V+F++
Sbjct: 194 RPCTPASGEDSSEHVHFLFTQAAVILLAIYLLITAIIGTVVSLSDAVSYILVAIVVIFLI 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLAIPVKMT+FP+  K+   + SSD L    G++T TDPLLTPSSSA  LGSFYE +D 
Sbjct: 254 SPLAIPVKMTIFPSRPKKNPPSDSSDHLMLGEGETTPTDPLLTPSSSATSLGSFYENDDA 313

Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
           SDVEILLA+GEGAVK+KRRP+RGEDFK+ EA +KADFWLLW VYFLGVG+GVT+LNNLAQ
Sbjct: 314 SDVEILLAMGEGAVKKKRRPKRGEDFKIHEALIKADFWLLWVVYFLGVGSGVTILNNLAQ 373

Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS 278
           IG A G+ DTT LL LF  CNF GR+GSG +SEH+VRS
Sbjct: 374 IGAAFGLEDTTILLALFGFCNFVGRIGSGAVSEHFVRS 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443039|ref|XP_002270754.1| PREDICTED: uncharacterized membrane protein YMR155W [Vitis vinifera] gi|297743570|emb|CBI36437.3| unnamed protein product [Vitis vinifera]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/279 (68%), Positives = 230/279 (82%), Gaps = 1/279 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YT +YN VLQ SA+ LLLFL LG+P++C    YFI
Sbjct: 132 MRNFPLSRGTVAGILKGYIGLSAAVYTEIYNSVLQESASKLLLFLTLGLPVLCFALMYFI 191

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           RACTPASGEDSSEHGHF+FTQAASV L IY++A ++  D  + SDALS     IMV+F+L
Sbjct: 192 RACTPASGEDSSEHGHFLFTQAASVCLGIYLLATTVVDDLFNPSDALSNTFTGIMVIFLL 251

Query: 121 SPLAIPVKMTLFPA-TKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETED 179
            PLAIP+KMTLFP+ +KK +   GSSDSL Q  G+S QT+PLLTPSSSA  LGSF+E E 
Sbjct: 252 CPLAIPLKMTLFPSNSKKNLPPVGSSDSLVQGEGNSNQTEPLLTPSSSATCLGSFHEGEY 311

Query: 180 FSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
            SD+++LLA+GEGA+K+KR+P+RGEDFK  EAF+KADFWLLW VYFLGVG+GVTVLNNLA
Sbjct: 312 ASDIDMLLAVGEGAIKKKRKPKRGEDFKFREAFIKADFWLLWLVYFLGVGSGVTVLNNLA 371

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS 278
           QIGVA GV DTT LL LFS CNF GRL  GV+SE++VR+
Sbjct: 372 QIGVAFGVTDTTILLSLFSFCNFLGRLFGGVVSEYFVRT 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054332|ref|XP_002298207.1| predicted protein [Populus trichocarpa] gi|222845465|gb|EEE83012.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/278 (69%), Positives = 224/278 (80%), Gaps = 2/278 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTVSGILKGYAGIAAA+YTV+Y +VL+ S + LLL L LGIP++CL   YFI
Sbjct: 134 MRNFPLSRGTVSGILKGYAGIAAAVYTVIYKLVLKESDSELLLILTLGIPILCLAMMYFI 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R C+PASG DSSEH HF+F+Q ASV LA+Y++  +I S  VSLSD +SYILV IMV+ ++
Sbjct: 194 RPCSPASGVDSSEHVHFIFSQVASVLLALYLLITTIISGVVSLSDTVSYILVLIMVIILM 253

Query: 121 SPLAIPVKMTLFPATKKR-IRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETED 179
           SPLAIPVKMTLFPA  KR +  + SSD L  + G+ST TD LLTPSSS   LGSFYE ED
Sbjct: 254 SPLAIPVKMTLFPAEHKRHVPPSDSSDHLVPKEGESTPTDSLLTPSSSGTNLGSFYENED 313

Query: 180 FSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
             D  +LLA+GEGAVK KRRPRRGEDFK+ EA +KADFWLLW V FLGVGAGVTVLNNLA
Sbjct: 314 ALDAGMLLAVGEGAVK-KRRPRRGEDFKIREALIKADFWLLWVVSFLGVGAGVTVLNNLA 372

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVR 277
           QIGVA G+ DTT LL LFS CNF GR+GSG +SEH+VR
Sbjct: 373 QIGVAFGLEDTTLLLTLFSFCNFVGRIGSGAISEHFVR 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468956|ref|XP_004152187.1| PREDICTED: uncharacterized protein LOC101211550 [Cucumis sativus]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/282 (64%), Positives = 226/282 (80%), Gaps = 1/282 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YTV+Y++VL+ SA  LLLFLA+GIP++CL   YF+
Sbjct: 134 MRNFPLSRGTVAGILKGYVGLSAAVYTVIYSLVLRKSALNLLLFLAIGIPILCLAMMYFV 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPAS ED SE  HF+FTQAA V L +++V+ +I     + SDA+ Y LVAIMV+ ++
Sbjct: 194 RPCTPASSEDPSERAHFLFTQAACVLLGLFLVSTTILDATTTPSDAVGYTLVAIMVILLM 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLA+P+KMT+   TK       SS+ LA    DS+Q +PLLTPSSSA  LGSFYE +D 
Sbjct: 254 SPLAVPIKMTICARTKTLGPRVDSSEPLASGESDSSQIEPLLTPSSSATNLGSFYENDDA 313

Query: 181 SDVEILLAIGEGAV-KEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
           SDVE LLA+GEGA+ K+KRRP+RGEDFKL EA +KADFWLLWF+YFLGVG G+TVLNNL+
Sbjct: 314 SDVETLLAVGEGAIHKKKRRPKRGEDFKLREAVIKADFWLLWFLYFLGVGPGITVLNNLS 373

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281
           QIG++LG+ND T LL LFS CNF GRLGSGV+SEH+VRS ++
Sbjct: 374 QIGISLGINDATLLLALFSFCNFVGRLGSGVISEHFVRSRMI 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516077|ref|XP_004165074.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101223430 [Cucumis sativus]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/282 (64%), Positives = 225/282 (79%), Gaps = 1/282 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YTV+Y++VL+ SA  LLLFLA+GIP++CL   YF+
Sbjct: 134 MRNFPLSRGTVAGILKGYVGLSAAVYTVIYSLVLRKSALNLLLFLAIGIPILCLAMMYFV 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPAS ED SE  HF+FTQAA V L  ++V+ +I     + SDA+ Y LVAIMV+ ++
Sbjct: 194 RPCTPASSEDPSERAHFLFTQAACVLLXSFLVSTTILDATTTPSDAVGYTLVAIMVILLM 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLA+P+KMT+   TK       SS+ LA    DS+Q +PLLTPSSSA  LGSFYE +D 
Sbjct: 254 SPLAVPIKMTICARTKTLGPRVDSSEPLASGESDSSQIEPLLTPSSSATNLGSFYENDDA 313

Query: 181 SDVEILLAIGEGAV-KEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
           SDVE LLA+GEGA+ K+KRRP+RGEDFKL EA +KADFWLLWF+YFLGVG G+TVLNNL+
Sbjct: 314 SDVETLLAVGEGAIHKKKRRPKRGEDFKLREAVIKADFWLLWFLYFLGVGPGITVLNNLS 373

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281
           QIG++LG+ND T LL LFS CNF GRLGSGV+SEH+VRS ++
Sbjct: 374 QIGISLGINDATLLLALFSFCNFVGRLGSGVISEHFVRSRMI 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775997|emb|CAN69082.1| hypothetical protein VITISV_014065 [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/271 (69%), Positives = 221/271 (81%), Gaps = 1/271 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YT +YN VLQ SA+ LLLFL LG+P++C    YFI
Sbjct: 79  MRNFPLSRGTVAGILKGYIGLSAAVYTEIYNSVLQESASKLLLFLTLGLPVLCFALMYFI 138

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           RACTPASGEDSSEHGHF+FTQAASV L IY++A ++  D  + SDALS     IMV+F+L
Sbjct: 139 RACTPASGEDSSEHGHFLFTQAASVCLGIYLLATTVVDDLFNPSDALSNTFTGIMVIFLL 198

Query: 121 SPLAIPVKMTLFPA-TKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETED 179
            PLAIP+KMTLFP  +KK +   GSSDSL Q  G+S QT+PLLTPSSSA  LGSF+E E 
Sbjct: 199 CPLAIPLKMTLFPTNSKKNLPPVGSSDSLVQGEGNSNQTEPLLTPSSSATCLGSFHEGEY 258

Query: 180 FSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
            SD+++LLA+GEGA+K+KR+P+RGEDFK  EAF+KADFWLLW VYFLGVG+GVTVLNNLA
Sbjct: 259 ASDIDMLLAVGEGAIKKKRKPKRGEDFKFREAFIKADFWLLWLVYFLGVGSGVTVLNNLA 318

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGV 270
           QIGVA GV DTT LL LFS CNF GRL  GV
Sbjct: 319 QIGVAFGVTDTTILLSLFSFCNFLGRLFGGV 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484689|ref|XP_002268798.2| PREDICTED: uncharacterized protein LOC100251745 [Vitis vinifera]

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 173/282 (61%), Positives = 221/282 (78%), Gaps = 4/282 (1%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YT +Y   L  S++ LL+FLALG+PLIC    YFI
Sbjct: 132 MRNFPLSRGTVAGILKGYGGLSAAVYTEIYTTTLHKSSSELLMFLALGVPLICFTMMYFI 191

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPASGEDS++HGHF+FTQAASV L  Y++  +I +D  SLS  +SY  +A MV+ ++
Sbjct: 192 RPCTPASGEDSAQHGHFLFTQAASVVLGSYLLTTTILNDIFSLSAPISYTFLAAMVLLLM 251

Query: 121 SPLAIPVKMTLFPATKKRI----RSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYE 176
           +PLAIP+KMTL P  + +     +  GSS+S+ Q   ++ +T+PLLTPSSS A LGSF++
Sbjct: 252 APLAIPIKMTLNPTNRSKSGMLNQPVGSSESMLQGEENADKTEPLLTPSSSTASLGSFHK 311

Query: 177 TEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLN 236
            +  S++++LLA GEGAVK+KRRPRRGEDFK  EA VK DFWLL+ VYF GVG+GVTVLN
Sbjct: 312 NDCVSEIDMLLAEGEGAVKKKRRPRRGEDFKFTEALVKVDFWLLFLVYFAGVGSGVTVLN 371

Query: 237 NLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS 278
           NLAQIG+A GV++TT LLCLFS CNF GRLG G +SEH++RS
Sbjct: 372 NLAQIGIAQGVHNTTMLLCLFSFCNFLGRLGGGAVSEHFLRS 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839885|ref|XP_002887824.1| hypothetical protein ARALYDRAFT_895939 [Arabidopsis lyrata subsp. lyrata] gi|297333665|gb|EFH64083.1| hypothetical protein ARALYDRAFT_895939 [Arabidopsis lyrata subsp. lyrata]

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 185/316 (58%), Positives = 230/316 (72%), Gaps = 6/316 (1%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFP+SRG V+G+LKGY GI+ A +TVL++MVL +SAT LLLFL +GIP+ICL   YFI
Sbjct: 134 MRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSATNLLLFLTVGIPVICLTVMYFI 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R C PA+GED SE  +F F  A S+  A Y+V  ++ S+   L   L Y+LVAIMV+ +L
Sbjct: 194 RPCIPATGEDPSEPMYFAFLLATSILFAAYLVVTTVVSEVFILPSILKYVLVAIMVLLLL 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLA+P+KMTLF +  K     GSSDSLA+E G  T  +PLLTPS+SA+ LG  +E +D 
Sbjct: 254 SPLAVPIKMTLFRSNAKS-SPLGSSDSLAKEEG--THEEPLLTPSTSASNLGPIFEGDDE 310

Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
           SD+EILLA GEGAVK+KR+PRRGEDFKLG+ FVKADFWLLWFVYFLG+G+GVTV NNLAQ
Sbjct: 311 SDMEILLAEGEGAVKKKRKPRRGEDFKLGQVFVKADFWLLWFVYFLGMGSGVTVSNNLAQ 370

Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVL 300
           IG A G+ DTT LLCLFS  NF GRL SG +SEH+VRS  L    R+I +G      +  
Sbjct: 371 IGFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVRSRTLP---RTIWMGAAQLVMVFT 427

Query: 301 FEKFQTTVEVFVSAYM 316
           F  F   ++  +S Y+
Sbjct: 428 FLLFAMAIDHTMSIYV 443

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084552|emb|CBI25573.3| unnamed protein product [Vitis vinifera]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/278 (60%), Positives = 215/278 (77%), Gaps = 7/278 (2%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YT +Y   L  S++ LL+FLALG+PLIC    YFI
Sbjct: 82  MRNFPLSRGTVAGILKGYGGLSAAVYTEIYTTTLHKSSSELLMFLALGVPLICFTMMYFI 141

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPASGEDS++HGHF+FTQAASV L  Y++  +I +D  SLS  +SY  +A MV+ ++
Sbjct: 142 RPCTPASGEDSAQHGHFLFTQAASVVLGSYLLTTTILNDIFSLSAPISYTFLAAMVLLLM 201

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           +PLAIP+KMTL P  +       S   +  +  ++ +T+PLLTPSSS A LGSF++ +  
Sbjct: 202 APLAIPIKMTLNPTNR-------SKSGMLNQPENADKTEPLLTPSSSTASLGSFHKNDCV 254

Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
           S++++LLA GEGAVK+KRRPRRGEDFK  EA VK DFWLL+ VYF GVG+GVTVLNNLAQ
Sbjct: 255 SEIDMLLAEGEGAVKKKRRPRRGEDFKFTEALVKVDFWLLFLVYFAGVGSGVTVLNNLAQ 314

Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS 278
           IG+A GV++TT LLCLFS CNF GRLG G +SEH++RS
Sbjct: 315 IGIAQGVHNTTMLLCLFSFCNFLGRLGGGAVSEHFLRS 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2198938	561	AT1G80530 "AT1G80530" [Arabido	0.876	0.495	0.576	7.6e-80
TAIR|locus:2078643	584	AT3G01930 [Arabidopsis thalian	0.873	0.474	0.324	3e-34
TAIR|locus:2174683	579	AT5G14120 [Arabidopsis thalian	0.845	0.462	0.309	2.4e-32
TAIR|locus:2116855	567	AT4G34950 [Arabidopsis thalian	0.861	0.481	0.286	4.7e-29
TAIR|locus:2046238	577	AT2G28120 [Arabidopsis thalian	0.403	0.221	0.287	5.4e-17
TAIR|locus:2159752	540	AT5G50520 [Arabidopsis thalian	0.539	0.316	0.324	8.9e-14
TAIR|locus:2832385	540	AT5G50630 [Arabidopsis thalian	0.539	0.316	0.324	8.9e-14
TAIR|locus:2011241	526	AT1G18940 [Arabidopsis thalian	0.277	0.167	0.333	2.4e-13
TAIR|locus:2059829	546	AT2G16660 [Arabidopsis thalian	0.548	0.318	0.316	1.6e-12
TAIR|locus:2040809	525	AT2G34350 [Arabidopsis thalian	0.233	0.140	0.368	1.7e-12

TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 162/281 (57%), Positives = 199/281 (70%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             MRNFP+SRG V+G+LKGY GI+ A +TVL++MVL +SA                   YFI
Sbjct:   134 MRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSAMDLLLFLTVGIPVICLTVMYFI 193

Query:    61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
             R C PA+GED SE  +F F    S+  A Y+V  ++ S+   L   L Y+LVAIMV+ +L
Sbjct:   194 RPCIPATGEDPSEPMYFAFLLVTSILFAAYLVVTTVLSEVFILPSILKYVLVAIMVLLLL 253

Query:   121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
             SPLA+P+KMTLF +  K     GSSD+LA+E G  T  +PLLTPS+SA+ LG  +E +D 
Sbjct:   254 SPLAVPIKMTLFRSNAKS-SPLGSSDNLAKEEG--THEEPLLTPSTSASNLGPIFEGDDE 310

Query:   181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
             SD+EILLA  EGAVK+KR+PRRGEDFK G+ FVKADFWLLWFVYFLG+G+GVTV NNLAQ
Sbjct:   311 SDMEILLAEAEGAVKKKRKPRRGEDFKFGQVFVKADFWLLWFVYFLGMGSGVTVSNNLAQ 370

Query:   241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281
             IG A G+ DTT LLCLFS  NF GRL SG +SEH+VRS  L
Sbjct:   371 IGFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVRSRTL 411

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 3.0e-34, P = 3.0e-34
 Identities = 95/293 (32%), Positives = 147/293 (50%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             ++NFP SRG V GILKG+AG+  AI + +Y M+  +   +                 +FI
Sbjct:   137 VQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAPSVVVVPLMFFI 196

Query:    61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
             R         SS+   F    A  + LA Y++A+ +  D++ LS ++      ++   +L
Sbjct:   197 RPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLVEDFIDLSHSIIIAFTVVLFAILL 256

Query:   121 SPLAIPVKMTLFPATKK---RIRSAGSSDSLAQEGGDSTQTD--PLLTPSS-------SA 168
              P+ IP+  + F A+      +      D   Q+ G ST  D  P L  S          
Sbjct:   257 VPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQSTTPDHGPELIFSEVEDEKPKEV 316

Query:   169 AYLGSFYETEDFSDVE--ILLAIGEGAVKEKRR--PRRGEDFKLGEAFVKADFWLLWFVY 224
               L +    +  + ++  ++ A  EGAV+ KRR  P RGEDF L +A VKADFWL++F  
Sbjct:   317 DLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPHRGEDFTLTQALVKADFWLIFFSL 376

Query:   225 FLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVR 277
              LG G+G+TV++NL Q+  +LG ++T   + + S+ NF GR+G G  SE  VR
Sbjct:   377 LLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSELIVR 429

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 2.4e-32, P = 2.4e-32
 Identities = 92/297 (30%), Positives = 148/297 (49%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             ++NFP SRG V GILKG+AG+  AI + +Y M+  ++  +                 +FI
Sbjct:   137 VQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTPAVVVVCLMFFI 196

Query:    61 RACTPASGEDS---SEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVV 117
             R   P  G      ++   F F     + LA Y++++ +  D V +S  +  +   ++ V
Sbjct:   197 R---PVGGHKQIRPTDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVITVFTIVLFV 253

Query:   118 FMLSPLAIPVKMTLFPAT-------------KKRIRSAG--SSDSLAQEGGDSTQTDPLL 162
              ++ P+ +P+  + F  T             K+  +  G  + D +  E  D    D  L
Sbjct:   254 ILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPGLQTPDLILSEVEDEKPKDVDL 313

Query:   163 TPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRR--PRRGEDFKLGEAFVKADFWLL 220
              P+S        ++       +++ A  EGAV+  RR  P RGEDF L +A VKADFWL+
Sbjct:   314 LPASER------HKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLTQALVKADFWLI 367

Query:   221 WFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVR 277
             +F   LG G+G+TV++NL Q+  +LG ++T  L+ + S+ NF GR+G G  SE  VR
Sbjct:   368 FFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGGYFSELVVR 424

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 4.7e-29, P = 4.7e-29
 Identities = 80/279 (28%), Positives = 136/279 (48%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             +RNF  +RG VSGILKGY G++ AI+T L N +  +   +                 +F+
Sbjct:   137 IRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFAVCLTAVFFL 196

Query:    61 RACTPAS--GEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVF 118
             R   P++   ED+ E  +F      +V +A+Y+ +  I       + A S    +I+++ 
Sbjct:   197 REIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIG---IKTGAFSIAFASILLIL 253

Query:   119 MLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETE 178
             + SP+A+P    +           G  D      G   + +  +  +++AA        +
Sbjct:   254 LASPVAVPFHAFIRSKVHDEQDVEGRIDEPLLRSGSEIEVEETIVGAAAAADNELPPSLK 313

Query:   179 DFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNL 238
               S+ E     G     EK+RP  GE+  + EA +  DFW+L+  +  GVG G+ V+NN+
Sbjct:   314 PLSNEEEENH-GTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNM 372

Query:   239 AQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVR 277
              QIG+ALG  D +  + + S+  F GR+ SG +SEH+++
Sbjct:   373 GQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIK 411

GO:0009507 "chloroplast" evidence=ISM

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 5.4e-17, Sum P(2) = 5.4e-17
 Identities = 38/132 (28%), Positives = 61/132 (46%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             ++NFP SRG + G+LKGY G++ AI+T LY  +  + + +              V  Y I
Sbjct:   138 VKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPAAVSLVFVYLI 197

Query:    61 RACTPASGEDS-SEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFM 119
             R        +  S    F++    S+FLA++++A++I    V  S A       I    +
Sbjct:   198 REKKVVRQRNELSVFYQFLYI---SIFLALFLMAMNIAEKQVHFSKAAYAASATICCALL 254

Query:   120 LSPLAIPVKMTL 131
               PL + VK  L
Sbjct:   255 FVPLTVSVKQEL 266

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 8.9e-14, P = 8.9e-14
 Identities = 61/188 (32%), Positives = 96/188 (51%)

Query:   104 SDALSYILV-AIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLL 162
             SD L ++ +    VV  +  L + V  ++F  T+  I ++G+   +           P+L
Sbjct:   210 SDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILVIFM-------VVPVL 262

Query:   163 TPSSSAAYLG----SFYETEDFSDVE-----ILLAIGEGAVKEKRRPRRGEDFKLGEAFV 213
              P SS    G    S    E  S+V+      L+   +   ++KR P  GEDF L +A  
Sbjct:   263 VPFSSVFISGNNVTSVKPEEGTSNVDQHEARTLIERSDRPPEKKRAPCIGEDFTLLQALG 322

Query:   214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSE 273
             +ADFWL++    LGVG+G+T+++NL QI  +LG ++T   + L S+ NF GR+  G  SE
Sbjct:   323 QADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFVSLISISNFLGRVAGGYFSE 382

Query:   274 HYVRSLLL 281
               +R L L
Sbjct:   383 LIIRKLSL 390

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 8.9e-14, P = 8.9e-14
 Identities = 61/188 (32%), Positives = 96/188 (51%)

Query:   104 SDALSYILV-AIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLL 162
             SD L ++ +    VV  +  L + V  ++F  T+  I ++G+   +           P+L
Sbjct:   210 SDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILVIFM-------VVPVL 262

Query:   163 TPSSSAAYLG----SFYETEDFSDVE-----ILLAIGEGAVKEKRRPRRGEDFKLGEAFV 213
              P SS    G    S    E  S+V+      L+   +   ++KR P  GEDF L +A  
Sbjct:   263 VPFSSVFISGNNVTSVKPEEGTSNVDQHEARTLIERSDRPPEKKRAPCIGEDFTLLQALG 322

Query:   214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSE 273
             +ADFWL++    LGVG+G+T+++NL QI  +LG ++T   + L S+ NF GR+  G  SE
Sbjct:   323 QADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFVSLISISNFLGRVAGGYFSE 382

Query:   274 HYVRSLLL 281
               +R L L
Sbjct:   383 LIIRKLSL 390

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
 Identities = 32/96 (33%), Positives = 54/96 (56%)

Query:   204 EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCN 261
             +   L +A    DFWLL+     G+G+G++ +NN+ QIG +L     +   LL L+++ N
Sbjct:   304 KSLNLLQAMCNVDFWLLFLAMICGMGSGISTINNIRQIGESLRYTSVEINSLLALWNIWN 363

Query:   262 FAGRLGSGVLSE---H---YVRSLLLCSYLRSIKLG 291
             F GR G G +S+   H   + R LL+ + L ++ +G
Sbjct:   364 FIGRFGGGYVSDWLLHRKGWPRPLLMATTLGTMTIG 399

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 62/196 (31%), Positives = 102/196 (52%)

Query:    86 FLAIYVVAISITSDYVSLSDALSYILVAIMVVF---MLSPLAIPVKMTLFPATKKRIRSA 142
             F    +VA+ + + Y+   D +        V F   +L  LA P+ +  F +  K + + 
Sbjct:   213 FTIFNIVAV-VVAVYLQSYDIIGIKTGVFSVAFASILLFLLASPIAIP-FHSFIKSL-NY 269

Query:   143 GSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIG-EGAVKEKRRPR 201
             G  D L  EG    Q +PLL    +AA      E E    V ++ A+  E   K++++P 
Sbjct:   270 GEQDDL--EG--RIQ-EPLLRSEIAAA------EKE----VIVVAAVAAEEEEKKRKKPV 314

Query:   202 RGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCN 261
              GED  + EA +  DFW+L+  +  GVG G+ V+NN+ QIG+ALG  + +  + + S+  
Sbjct:   315 LGEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTNVSIFVSMTSIWG 374

Query:   262 FAGRLGSGVLSEHYVR 277
             F GR+ SG LSE++++
Sbjct:   375 FFGRILSGTLSEYFLK 390

GO:0009507 "chloroplast" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 28/76 (36%), Positives = 45/76 (59%)

Query:   205 DFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNF 262
             D  + EA    +FWLL+     G+G+G+  +NN+ Q+G +L  +      L+ L+S+ NF
Sbjct:   305 DMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTVQLNSLVSLWSIWNF 364

Query:   263 AGRLGSGVLSEHYVRS 278
              GR GSG +S+ Y+ S
Sbjct:   365 LGRFGSGYISDTYLHS 380

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
pfam06813	248	pfam06813, Nodulin-like, Nodulin-like	9e-49
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	3e-04

>gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like

 Score =  162 bits (413), Expect = 9e-49
 Identities = 66/127 (51%), Positives = 82/127 (64%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           +RNFP SRG V GILKGYAG++AAIYT LY  +  N A++LLL  AL   ++ LV  YFI
Sbjct: 122 IRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYFI 181

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R C    GE  SE   F+     SV LA+Y+VA+SI S    LS A  Y L AIMV+ +L
Sbjct: 182 RPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLLL 241

Query: 121 SPLAIPV 127
            PLA+P+
Sbjct: 242 VPLAVPI 248

This family represents a conserved region within plant nodulin-like proteins. Length = 248

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 185 ILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA 244
            L+    G + +       +D+ + E      FW+L+  +FL   +G+ ++      G +
Sbjct: 175 FLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS 234

Query: 245 LGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVR 277
           LG++D      + + S+ N  GR   G LS+   R
Sbjct: 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGR 269

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
PTZ00207	591	hypothetical protein; Provisional	100.0
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.96
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.16
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.97
TIGR00893	399	2A0114 d-galactonate transporter.	97.61
PLN00028	476	nitrate transmembrane transporter; Provisional	97.43
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.35
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.34
PRK11663	434	regulatory protein UhpC; Provisional	97.22
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.16
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.15
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.07
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.89
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	96.77
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	96.42
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.4
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	96.12
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	95.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	95.88
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	95.82
PRK09705	393	cynX putative cyanate transporter; Provisional	95.72
PRK09528	420	lacY galactoside permease; Reviewed	95.69
KOG2533	495	consensus Permease of the major facilitator superf	95.63
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	95.61
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	95.33
TIGR00897	402	2A0118 polyol permease family. This family of prot	95.17
PRK10213	394	nepI ribonucleoside transporter; Reviewed	95.16
PRK03633	381	putative MFS family transporter protein; Provision	94.74
PRK14995	495	methyl viologen resistance protein SmvA; Provision	94.61
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	94.45
KOG0569	485	consensus Permease of the major facilitator superf	94.39
PRK15403	413	multidrug efflux system protein MdtM; Provisional	94.35
PRK03545	390	putative arabinose transporter; Provisional	94.32
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	94.11
PRK10504	471	putative transporter; Provisional	94.07
PRK11652	394	emrD multidrug resistance protein D; Provisional	94.07
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	93.84
PRK10091	382	MFS transport protein AraJ; Provisional	93.79
PRK03699	394	putative transporter; Provisional	93.65
PRK10091	382	MFS transport protein AraJ; Provisional	93.57
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	93.5
PRK12382	392	putative transporter; Provisional	93.34
PRK03699	394	putative transporter; Provisional	93.33
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	93.32
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	93.29
PRK12307	426	putative sialic acid transporter; Provisional	93.25
PRK09874	408	drug efflux system protein MdtG; Provisional	93.22
TIGR00900	365	2A0121 H+ Antiporter protein.	93.14
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	93.06
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	92.99
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	92.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	92.91
PRK03893	496	putative sialic acid transporter; Provisional	92.76
PRK11195	393	lysophospholipid transporter LplT; Provisional	92.73
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	92.6
PRK10133	438	L-fucose transporter; Provisional	92.58
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	92.52
PRK10054	395	putative transporter; Provisional	92.44
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	92.41
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	92.39
PRK03633	381	putative MFS family transporter protein; Provision	92.38
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	92.24
PRK03545	390	putative arabinose transporter; Provisional	92.21
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	92.21
KOG2532	466	consensus Permease of the major facilitator superf	92.19
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	91.82
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	91.8
TIGR00897	402	2A0118 polyol permease family. This family of prot	91.76
PRK11663	434	regulatory protein UhpC; Provisional	91.62
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	91.51
PRK10406	432	alpha-ketoglutarate transporter; Provisional	91.37
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	91.36
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	91.27
PRK10489	417	enterobactin exporter EntS; Provisional	91.25
TIGR00891	405	2A0112 putative sialic acid transporter.	91.1
PRK10473	392	multidrug efflux system protein MdtL; Provisional	91.03
TIGR00895	398	2A0115 benzoate transport.	90.89
TIGR00901	356	2A0125 AmpG-related permease.	90.82
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	90.69
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	90.51
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	90.4
PLN00028	476	nitrate transmembrane transporter; Provisional	90.38
TIGR00900	365	2A0121 H+ Antiporter protein.	90.35
PRK15075	434	citrate-proton symporter; Provisional	90.23
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	90.02
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	90.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	89.88
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	89.83
TIGR00898	505	2A0119 cation transport protein.	89.65
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	89.5
PRK09584	500	tppB putative tripeptide transporter permease; Rev	89.4
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	89.37
PRK11043	401	putative transporter; Provisional	89.28
PRK05122	399	major facilitator superfamily transporter; Provisi	89.25
PRK05122	399	major facilitator superfamily transporter; Provisi	89.18
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	89.01
PRK12307	426	putative sialic acid transporter; Provisional	88.84
PRK11043	401	putative transporter; Provisional	88.8
PRK10473	392	multidrug efflux system protein MdtL; Provisional	88.35
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	88.15
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	88.06
TIGR00892	455	2A0113 monocarboxylate transporter 1.	88.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	88.0
TIGR00895	398	2A0115 benzoate transport.	87.4
PRK11646	400	multidrug resistance protein MdtH; Provisional	87.37
PRK10133	438	L-fucose transporter; Provisional	87.21
PRK14995	495	methyl viologen resistance protein SmvA; Provision	87.19
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	86.71
PRK09528	420	lacY galactoside permease; Reviewed	86.17
PRK10213	394	nepI ribonucleoside transporter; Reviewed	86.12
PRK09705	393	cynX putative cyanate transporter; Provisional	86.07
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	85.82
TIGR00893	399	2A0114 d-galactonate transporter.	85.78
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	85.74
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	85.1
PRK15462	493	dipeptide/tripeptide permease D; Provisional	85.02
PF13347	428	MFS_2: MFS/sugar transport protein	84.77
PRK10504	471	putative transporter; Provisional	83.77
PRK10642	490	proline/glycine betaine transporter; Provisional	83.73
PRK10207	489	dipeptide/tripeptide permease B; Provisional	83.6
PRK10077	479	xylE D-xylose transporter XylE; Provisional	83.57
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	83.32
PRK03893	496	putative sialic acid transporter; Provisional	83.3
TIGR00805	633	oat sodium-independent organic anion transporter.	83.28
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	82.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	82.83
PTZ00207	591	hypothetical protein; Provisional	82.81
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	82.7
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	82.56
PRK11902	402	ampG muropeptide transporter; Reviewed	80.77
PRK12382	392	putative transporter; Provisional	80.77
PRK09848	448	glucuronide transporter; Provisional	80.64
PRK15011	393	sugar efflux transporter B; Provisional	80.47
PRK09952	438	shikimate transporter; Provisional	80.27

>PTZ00207 hypothetical protein; Provisional

Probab=100.00  E-value=5.9e-40  Score=333.43  Aligned_cols=270  Identities=20%  Similarity=0.270  Sum_probs=207.3

Q ss_pred             ccCCCCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhheeEeeccCCCCC------CCCCCCc
Q 021110            2 RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASG------EDSSEHG   75 (317)
Q Consensus         2 ~nFP~~RG~vvgi~k~~~GLSaaIfs~i~~~ff~~d~~~fllfLa~~~~~v~ll~~~fir~~p~~~~------~~~~~~~   75 (317)
                      +|||++||+++|+.|++.|+|++|+++++.+++.++.+.+++++++++.++++++++++|.+|++..      .+++|+.
T Consensus       147 ~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~  226 (591)
T PTZ00207        147 SVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKA  226 (591)
T ss_pred             HhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999987642      1234444


Q ss_pred             -----------------chhhHHHHHHHHHHHHHHHHHhccccccChhhHHHHHHHHH-HHhhcc-cccceecccccccc
Q 021110           76 -----------------HFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMV-VFMLSP-LAIPVKMTLFPATK  136 (317)
Q Consensus        76 -----------------~f~~~~~~~v~l~~yl~~~~i~~~~~~~s~~~~~~~~i~~i-~ll~~p-~~i~~~~~~~~~~~  136 (317)
                                       +|..++.+++++++||++++++++|++++++.+..++++++ ++++.| +++|++.  .++..
T Consensus       227 ~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~--~~~~~  304 (591)
T PTZ00207        227 QRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT--FDGKR  304 (591)
T ss_pred             HHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH--hccCC
Confidence                             88899999999999999999999999999999999999988 666677 6666644  33211


Q ss_pred             cccccCCCCCcccccCCCCCCCCCCCCCCccccccCCCCCCCCCchhHHHHHhccCcccccCCCCCCCCCCHHhhhhhhh
Q 021110          137 KRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKAD  216 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~~d~~~~~~~ll~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~~~d~t~~~~l~t~~  216 (317)
                      .+    ++       +|. +..+.  . +  .+.+. .   +++.+.      .+.+.++ ++|++|+  |++|++++.|
T Consensus       305 ~~----~~-------~~~-~~~~~--~-~--~~~~~-~---~~~~~~------~~~~~~~-~~P~~~~--t~~q~l~~~d  354 (591)
T PTZ00207        305 PH----DD-------SDG-KAKEH--V-E--AGEEV-S---AAEDKV------VETDVDY-IAPQFQE--TFIEGLKTAR  354 (591)
T ss_pred             cC----CC-------ccc-ccccc--c-c--ccccc-c---cccccc------ccccccC-CCCCCcc--hHHHHHhchh
Confidence            10    00       000 00000  0 0  00000 0   000000      0011222 2388887  9999999999


Q ss_pred             HHHHHHHHHHhhcchhheecchHHHHHHh-CC-Cch--hH-HHHHHHhhhcccccccchhhhhhhhhhh----HHH-HHH
Q 021110          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GV-NDT--TE-LLCLFSLCNFAGRLGSGVLSEHYVRSLL----LCS-YLR  286 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~-~~~--~~-~vsl~si~n~~GRl~~G~~SD~l~r~~~----~~r-~~~  286 (317)
                      ||++|+.++|+.|+|++++||++||++|+ |+ ++.  +. +|+++|+||++||+++|++| .+.||++    +|| ..+
T Consensus       355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l  433 (591)
T PTZ00207        355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIAL  433 (591)
T ss_pred             HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHH
Confidence            99999999999999999999999999999 77 333  33 89999999999999999997 7777766    899 555


Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q 021110          287 SIKLGRKCKCFLVLFEKFQ  305 (317)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~  305 (317)
                      .++.. |+++|++++-...
T Consensus       434 ~~~~~-~~~~~lll~~~~p  451 (591)
T PTZ00207        434 FIPSV-CIITMLTLFLTLP  451 (591)
T ss_pred             HHHHH-HHHHHHHHHHHCC
Confidence            66666 9999999965544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.96  E-value=2.6e-29  Score=231.07  Aligned_cols=127  Identities=44%  Similarity=0.791  Sum_probs=120.6

Q ss_pred             CccCCCCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhheeEeeccCCC--CCCCCCCCcchh
Q 021110            1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPA--SGEDSSEHGHFV   78 (317)
Q Consensus         1 v~nFP~~RG~vvgi~k~~~GLSaaIfs~i~~~ff~~d~~~fllfLa~~~~~v~ll~~~fir~~p~~--~~~~~~~~~~f~   78 (317)
                      +||||+|||+|+|++|+|+||||+||+++|++||++|+++|++|+|+.|.++++++++++|++|++  .+++++|+++|.
T Consensus       122 ~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~  201 (250)
T PF06813_consen  122 VRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFL  201 (250)
T ss_pred             HHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHH
Confidence            589999999999999999999999999999999999999999999999999999999999999974  345567888999


Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccChhhHHHHHHHHHHHhhcccccce
Q 021110           79 FTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPV  127 (317)
Q Consensus        79 ~~~~~~v~l~~yl~~~~i~~~~~~~s~~~~~~~~i~~i~ll~~p~~i~~  127 (317)
                      ..+.+++++++|+++++++++++++++..+...+++++++|++|++||+
T Consensus       202 ~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~llL~~Pl~i~~  250 (250)
T PF06813_consen  202 FFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLLLLLLPLAIPV  250 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhccC
Confidence            9999999999999999999999999999999999999999999999985

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.16  E-value=1.9e-05  Score=73.94  Aligned_cols=76  Identities=25%  Similarity=0.434  Sum_probs=59.3

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      +.++.++++++|.++..+++.......+.+...++.++++.++  .....++.++.+.+||+..|+++||++||+.+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~  274 (377)
T TIGR00890       197 TVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMS  274 (377)
T ss_pred             hHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            3467788889999988887776666666666666777777654  346788899999999999999999999886543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.97  E-value=3.5e-05  Score=78.18  Aligned_cols=95  Identities=22%  Similarity=0.204  Sum_probs=70.7

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHH
Q 021110          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLR  286 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r~~~  286 (317)
                      ++.++++.||.+.+...+....-..-.--+...+++.+++  +++.+++++++.|.+||++.|++.|+-..++.   ++.
T Consensus       292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~---~~~  368 (509)
T KOG2504|consen  292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL---VLF  368 (509)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH---HHH
Confidence            6889999999998877777666666666777788888886  46789999999999999999999998773221   455


Q ss_pred             HHHHHHHHHHHHHHHHhhccce
Q 021110          287 SIKLGRKCKCFLVLFEKFQTTV  308 (317)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~  308 (317)
                      .+++...+++.+.+  .+.++.
T Consensus       369 ~~~ll~~gl~~~~~--p~~~~~  388 (509)
T KOG2504|consen  369 LLTLLIAGLARLFL--PFATTY  388 (509)
T ss_pred             HHHHHHHHHHHHHH--HHhccH
Confidence            55555555555444  555543

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.61  E-value=0.00077  Score=63.10  Aligned_cols=73  Identities=21%  Similarity=0.155  Sum_probs=58.5

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL  279 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~  279 (317)
                      +.++.++++++|.+++..++.......+........++ ++.+.  .....++..+++.+|++..|+++||++||+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       207 QIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             chHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            56788999999999998888777777666666666654 56543  346778888999999999999999999986

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.43  E-value=0.00029  Score=70.47  Aligned_cols=74  Identities=23%  Similarity=0.303  Sum_probs=57.7

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      .+++.++++.+|++++.+++..+....+.+.+..+.+ ..|.+  ++..+.++..+++.+||+++|+++||++||+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~  320 (476)
T PLN00028        244 VLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFG  320 (476)
T ss_pred             HHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence            3577889999999999887777766665555555544 45765  34567889999999999999999999998754

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.35  E-value=0.001  Score=66.02  Aligned_cols=71  Identities=20%  Similarity=0.215  Sum_probs=52.1

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      +.++++.+|.+++..+|..+.-..+..-.....+ .+|.+.  +....++..+++.+|++..|+++||++||+.
T Consensus       253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~  326 (467)
T PRK09556        253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA  326 (467)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            4789999999999887765554333333443443 456653  4467778889999999999999999998764

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.34  E-value=0.0026  Score=59.51  Aligned_cols=74  Identities=16%  Similarity=0.198  Sum_probs=51.2

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      ..++.++++.+|.+.+..++.......+........ +.++.+.  .....++..+.+.+|+++.|+++||..+++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  284 (379)
T TIGR00881       208 FLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR  284 (379)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc
Confidence            456788999999988877665554333333344444 3456653  3457778899999999999999998755443

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.22  E-value=0.004  Score=61.22  Aligned_cols=67  Identities=24%  Similarity=0.325  Sum_probs=44.1

Q ss_pred             hhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhh
Q 021110          211 AFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVR  277 (317)
Q Consensus       211 ~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r  277 (317)
                      .++++.+|.+.+.+++....-..+..-...+. +..|.+.  +....+++.+++.+||++.|+++||+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~  308 (434)
T PRK11663        239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFN  308 (434)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence            56788999987765543332211122233333 3456653  3567888999999999999999999943

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.16  E-value=0.0054  Score=60.54  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=56.5

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      .+++.++++.+|.+++..++.......+..-+..+.+ .+|.+.  .....++..+++.+|+++.|+++|++.+|+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~  330 (465)
T TIGR00894       253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTL  330 (465)
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            5788999999999999887766655555555555544 456653  34567788899999999999999999876543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.15  E-value=0.0049  Score=60.89  Aligned_cols=69  Identities=12%  Similarity=0.111  Sum_probs=48.5

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCC--chhHHHHHHHhhhcccccccchhhhhhhhh
Q 021110          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRS  278 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~  278 (317)
                      ..++++.+|.+++.+++....-.....-.....++ .+.+  .+.....+.++++.+|++++|+++||++++
T Consensus       248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~  319 (452)
T PRK11273        248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG  319 (452)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            36788999998888776654333334445555554 4554  334566788899999999999999999643

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.07  E-value=0.0043  Score=61.65  Aligned_cols=67  Identities=13%  Similarity=0.126  Sum_probs=49.3

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhh
Q 021110          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHY  275 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l  275 (317)
                      .+.++++.||.+.+..++...+-.........+.++++++.  .....++.++++.++|++.|+++|+.
T Consensus       235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       235 FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            36788999998877665544433344445566667777763  45788889999999999999999974

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.89  E-value=0.01  Score=58.25  Aligned_cols=71  Identities=11%  Similarity=0.055  Sum_probs=49.7

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      +.++++.+|.+.+..++..+.-.........+.++ .|.+.  +.+..++.++.+.+|+++.|+++||++++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  319 (438)
T TIGR00712       246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR  319 (438)
T ss_pred             HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            46788999999876666543323334455555555 35543  3466778899999999999999999976543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=96.77  E-value=0.011  Score=57.80  Aligned_cols=70  Identities=13%  Similarity=0.077  Sum_probs=52.6

Q ss_pred             hhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhC--CCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          211 AFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALG--VND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       211 ~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~--~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      .++++.+|...++++|..+.-..+...+..+.++++  .+.  +..+.++..+++.+||+..|+++||++||+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~  311 (412)
T TIGR02332       238 EIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH  311 (412)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence            355688999988888766654445667777777753  332  3456788899999999999999999987653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=96.42  E-value=0.059  Score=52.93  Aligned_cols=72  Identities=13%  Similarity=-0.064  Sum_probs=48.4

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      .+.+++++||...+..++................+. +|++.  .........++..+|+++.|++.||++||+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  323 (485)
T TIGR00711       249 LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL  323 (485)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH
Confidence            467788888887665554433322233334445554 46553  3456677888999999999999999998754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00896 CynX cyanate transporter

Probab=96.40  E-value=0.0093  Score=56.49  Aligned_cols=72  Identities=18%  Similarity=0.167  Sum_probs=52.9

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL  279 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~  279 (317)
                      .++.+|++.+|.+.+.+++..+.-..+......+.++.|.+.  .....++..++..+||+..|+++||+++|+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~  263 (355)
T TIGR00896       190 PVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQR  263 (355)
T ss_pred             CchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch
Confidence            456788899998777666554444444555666777777653  356888899999999999999999995443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=96.12  E-value=0.013  Score=55.26  Aligned_cols=75  Identities=19%  Similarity=0.199  Sum_probs=57.4

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      ..++.++++++|.+.+.+++..+....+.+......++ ++.++  ...+.++..+.+.+||++.|+++||++||+.+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~  294 (366)
T TIGR00886       217 DQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL  294 (366)
T ss_pred             HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH
Confidence            45678899999999988888777665555556666654 46553  34577788899999999999999999997654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=95.91  E-value=0.021  Score=56.28  Aligned_cols=74  Identities=27%  Similarity=0.334  Sum_probs=61.5

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      ..+...+++|-|.+-+.|+...|+=+-..+-+++..++. +.++  +.....+...-+.+-|...|++|||++.+|.
T Consensus       210 ~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv  286 (417)
T COG2223         210 QLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV  286 (417)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH
Confidence            355677799999999999999998877888888888775 5543  3478999999999999999999999987654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=95.88  E-value=0.029  Score=51.99  Aligned_cols=73  Identities=22%  Similarity=0.311  Sum_probs=46.0

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HHHhCCC-ch--hHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVALGVN-DT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~al~~~-~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      +++..+++.+|.+++.+++....-.........+ .+.++.+ ..  ....++..+.+.++++..|.++||+++++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (352)
T PF07690_consen  199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRR  275 (352)
T ss_dssp             CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            4567777778855555444432222233333333 3455665 22  345778888888999999999999987654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=95.82  E-value=0.027  Score=55.74  Aligned_cols=73  Identities=16%  Similarity=0.185  Sum_probs=47.2

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHH--HHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG--VALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~--~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      -.++++-.|++-+..++.--.=. -|+.=+++.  |..+++  ++...++++=++...|-++.|++|||+-+.+..+-
T Consensus       247 YVL~Nk~iW~la~a~vfvYivR~-gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~  323 (448)
T COG2271         247 YVLKNKLIWLLALANVFVYVVRY-GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM  323 (448)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence            35777888888775544211110 123334443  334554  45678999999999999999999999965444333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=95.72  E-value=0.022  Score=55.22  Aligned_cols=73  Identities=23%  Similarity=0.284  Sum_probs=53.1

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      .+.++++++|.+.+.+++....-....+-...+.++.|.+.  .....++.++++.+||+..|.++||++||+..
T Consensus       199 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~  273 (393)
T PRK09705        199 VRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLL  273 (393)
T ss_pred             cccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence            45667888998877665554333334445666666666653  35688899999999999999999999987553

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.69  E-value=0.019  Score=55.86  Aligned_cols=74  Identities=12%  Similarity=0.072  Sum_probs=53.6

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +..++++||.+++.+++...+--.+..-.....+ ++|.+.  ..+..++..+...++++.+|.++||++||+.+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~   81 (420)
T PRK09528          5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLW   81 (420)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            5677889999988777766532233333333333 367664  4578999999999999999999999999887544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.63  E-value=0.062  Score=54.56  Aligned_cols=94  Identities=14%  Similarity=0.078  Sum_probs=66.7

Q ss_pred             CCHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          206 FKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       206 ~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      ..++|+++++..|.+.+..+|....--..-+-+..+-++ .++++  +..+...+.+++.+|=++.|++|||+..- .-.
T Consensus       264 ~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~-~~~  342 (495)
T KOG2533|consen  264 KGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTI-FAR  342 (495)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhh-HHH
Confidence            367999999999999999999877766555666666666 33543  34567788899999999999999998611 122


Q ss_pred             H-HHHHHHHHHHHHHHHHH
Q 021110          283 S-YLRSIKLGRKCKCFLVL  300 (317)
Q Consensus       283 r-~~~~~~~~~~~~~~~~~  300 (317)
                      | .+...+.+.+.+++..+
T Consensus       343 ~~~~~~~~~~~~~~g~~~l  361 (495)
T KOG2533|consen  343 RLLFIVFLCLYAIIGAISL  361 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            2 34444555666676555

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=95.61  E-value=0.028  Score=54.20  Aligned_cols=70  Identities=16%  Similarity=0.122  Sum_probs=49.6

Q ss_pred             hhhHHHHHHHHHHhhcc-hhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          214 KADFWLLWFVYFLGVGA-GVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~-Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +++||.+....++..++ +.....-...+.+.+|.+.  ..+.+++.++...++++.+|+++||++||+.+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~   73 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLW   73 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            47899987655554443 4443322223344567764  4568999999999999999999999999988655

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=95.33  E-value=0.032  Score=52.50  Aligned_cols=68  Identities=19%  Similarity=0.284  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHhhcchhheecchHH-HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          216 DFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .||..++.+++......++..-..+ +.++++.++  ..+..++..+...++.+.+|.++||++||+.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   72 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTL   72 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            5888888888776666665555554 778888874  3567889999999999999999999999876444

>TIGR00897 2A0118 polyol permease family

Probab=95.17  E-value=0.056  Score=52.41  Aligned_cols=73  Identities=12%  Similarity=0.057  Sum_probs=51.4

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      ++.++++.+|.+.+..++....-.....-...+.+.+|.+..  ....++..+++.+|++..|+++||++||+..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~  290 (402)
T TIGR00897       216 TILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV  290 (402)
T ss_pred             HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence            467888999988877666544333333334445566676533  3566778899999999999999999987653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=95.16  E-value=0.026  Score=54.85  Aligned_cols=68  Identities=10%  Similarity=0.089  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHhhcc---hhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          216 DFWLLWFVYFLGVGA---GVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~---Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ++|.++...++....   ..+....+.++.+++|.+.  ....+++..++..++++..|.++||++||+.+..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~   90 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVIL   90 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHH
Confidence            344445554443333   3334456777888888864  3568889999999999999999999999976544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=94.74  E-value=0.075  Score=50.98  Aligned_cols=70  Identities=10%  Similarity=-0.031  Sum_probs=51.7

Q ss_pred             hhhhHHHHHHHHHHhhcchhh-eecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          213 VKADFWLLWFVYFLGVGAGVT-VLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       213 ~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .+.++|.++...++.. .+.. +..-+..+.++++.++  ..+..+...+++.++.+.+|.++||++||+.+..
T Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~   76 (381)
T PRK03633          4 YTRPVLLLLCGLLLLT-LAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYL   76 (381)
T ss_pred             HHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3567888887665533 3333 3345666777777763  3568889999999999999999999999987555

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=94.61  E-value=1.1  Score=44.77  Aligned_cols=72  Identities=11%  Similarity=-0.084  Sum_probs=44.2

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      .+.+|++.|+...+..++...+-...........|. .|++.  +.......+++..+|.++.|.+.||+++|+.
T Consensus       253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~  327 (495)
T PRK14995        253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLV  327 (495)
T ss_pred             HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            456677777766655544332211112222333333 46553  3456667888899999999999999998653

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=94.45  E-value=0.49  Score=47.44  Aligned_cols=30  Identities=13%  Similarity=-0.015  Sum_probs=22.9

Q ss_pred             HHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          254 LCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       254 vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ..+..+++..|.++.|+++||++||+.+..
T Consensus       341 ~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~  370 (502)
T TIGR00887       341 LIIALAGTVPGYWVTVFLVDIIGRKPIQLM  370 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Confidence            344455677799999999999999876444

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.39  E-value=0.74  Score=46.70  Aligned_cols=77  Identities=16%  Similarity=0.102  Sum_probs=56.1

Q ss_pred             CCCCHHhhhhhh----hHHHHHHHHHHhhcchhheec-chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhh
Q 021110          204 EDFKLGEAFVKA----DFWLLWFVYFLGVGAGVTVLN-NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYV  276 (317)
Q Consensus       204 ~d~t~~~~l~t~----~Fw~l~~~~~~~~g~Gl~~i~-n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~  276 (317)
                      ++.+++|.++++    ..++.....++..-+|...|+ ....|-++.|.+.  +.......++.|....+.+.++-||+|
T Consensus       254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g  333 (485)
T KOG0569|consen  254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG  333 (485)
T ss_pred             cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            355888888863    355666677777778877554 3445667777763  345666788889999999999999999


Q ss_pred             hhhh
Q 021110          277 RSLL  280 (317)
Q Consensus       277 r~~~  280 (317)
                      ||.-
T Consensus       334 RRpL  337 (485)
T KOG0569|consen  334 RRPL  337 (485)
T ss_pred             CcHH
Confidence            8853

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=94.35  E-value=0.061  Score=52.63  Aligned_cols=54  Identities=13%  Similarity=0.099  Sum_probs=43.5

Q ss_pred             chhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          230 AGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       230 ~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +.-++.-.+.+|.++++.+.  ....++++.++.++|.+.+|.++||++||+.+..
T Consensus        31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~   86 (413)
T PRK15403         31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLIT   86 (413)
T ss_pred             HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHH
Confidence            44556667778888988763  4568899999999999999999999999976443

>PRK03545 putative arabinose transporter; Provisional

Probab=94.32  E-value=0.09  Score=50.55  Aligned_cols=72  Identities=19%  Similarity=0.212  Sum_probs=50.6

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL  279 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~  279 (317)
                      .++.+|++.+|.+++..++.........+....+.++ .|.+.  .....++.++.+.+|++..|.++||.+||.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  272 (390)
T PRK03545        198 LPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF  272 (390)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Confidence            4678899999887776655444443333334444454 45543  356778899999999999999999998764

>TIGR00883 2A0106 metabolite-proton symporter

Probab=94.11  E-value=0.17  Score=47.37  Aligned_cols=75  Identities=21%  Similarity=0.136  Sum_probs=49.4

Q ss_pred             CHHhhhhhhh--HHHHHHHHHHhhcchhheecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          207 KLGEAFVKAD--FWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~--Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      +.++.++++.  +|......++..............+. +.++.++  .....++..+.+.++++..|+++||++||+.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~  288 (394)
T TIGR00883       209 PIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL  288 (394)
T ss_pred             CHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence            3456666655  77666665554443333334455555 3455543  34567778899999999999999999988653

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10504 putative transporter; Provisional

Probab=94.07  E-value=0.12  Score=50.87  Aligned_cols=68  Identities=16%  Similarity=0.222  Sum_probs=53.5

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      +.+|++++.+++......++......+.+++|.+..  ...++...+...++.+.+|.++|+++||+.+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~   79 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFF   79 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            468998888877666555666678888889888743  35667778888999999999999999987644

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=94.07  E-value=0.13  Score=49.30  Aligned_cols=67  Identities=18%  Similarity=0.236  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .|++.....++.....++......+.++++.++  .....++..++..++.+.+|.++||++||+.+..
T Consensus        10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~   78 (394)
T PRK11652         10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILV   78 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence            344444555555554556666788888888864  3567888999999999999999999999886544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=93.84  E-value=0.17  Score=47.74  Aligned_cols=69  Identities=28%  Similarity=0.245  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHhhcchh-heecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          215 ADFWLLWFVYFLGVGAGV-TVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl-~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ..++.....+.+..+.+. ++......+.+++|.++  .....++..+++.++.+..|.++||++||+.+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~   75 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLL   75 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence            344444444444444443 34455677788888864  3567888999999999999999999999876444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=93.79  E-value=0.073  Score=51.15  Aligned_cols=69  Identities=14%  Similarity=0.127  Sum_probs=53.0

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +.+|.+.+..++..-...++..-+..+.+++|.+.  ....++...++..+|.+..|.++||++||+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~   73 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLF   73 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            45677766655555555566667777888888764  4578999999999999999999999999876544

>PRK03699 putative transporter; Provisional

Probab=93.65  E-value=0.15  Score=49.21  Aligned_cols=68  Identities=13%  Similarity=0.148  Sum_probs=48.1

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      +.+|++.+.+++.......+.+-...+.+ .+|.+.  .....++..+++.+||+..|.++||+++|+...
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~  275 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILT  275 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Confidence            46787777776655443334444555664 456653  456788899999999999999999999886543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=93.57  E-value=0.18  Score=48.43  Aligned_cols=74  Identities=19%  Similarity=0.231  Sum_probs=49.6

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      .+.++++.+|.++...+++...-....+......+ ..|.+.  ...+.++.++++.+||++.|+++||+++++...
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~  269 (382)
T PRK10091        193 FHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAA  269 (382)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHH
Confidence            34677888898877666543322222222333333 356653  356788999999999999999999999876543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=93.50  E-value=0.16  Score=54.18  Aligned_cols=72  Identities=26%  Similarity=0.201  Sum_probs=47.0

Q ss_pred             hhhhhHHHHHHHHHHhhcc-h--hheecc-hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          212 FVKADFWLLWFVYFLGVGA-G--VTVLNN-LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       212 l~t~~Fw~l~~~~~~~~g~-G--l~~i~n-~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      -.++..|.+++.+.++... |  ...++. +..+.++++.+.  ..++.++..++..+|.+++|+++|++|||+.+..
T Consensus       160 ~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii  237 (742)
T TIGR01299       160 GHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI  237 (742)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            3456677666554443322 2  122222 233445666653  3567888999999999999999999999977554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK12382 putative transporter; Provisional

Probab=93.34  E-value=0.17  Score=48.56  Aligned_cols=74  Identities=15%  Similarity=0.092  Sum_probs=50.0

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchH-HHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLA-QIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~-~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +...+..+|.+++..++..-+.-+...-+. .+.+++|.+.  ..+.+++..+...++.+.+|.++||++||+.+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~   86 (392)
T PRK12382         10 RSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQ   86 (392)
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHH
Confidence            445566777776655444332222222233 2456777764  3578899999999999999999999999987554

>PRK03699 putative transporter; Provisional

Probab=93.33  E-value=0.18  Score=48.65  Aligned_cols=69  Identities=10%  Similarity=0.024  Sum_probs=51.1

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +-+|..++.+++..+.-.+.-....++.++++.+.  .....++..++..+|.+..|.++||++||+.+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~   77 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIF   77 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            34666666666655554444445677888888864  3467788889999999999999999999976544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=93.32  E-value=0.19  Score=49.84  Aligned_cols=68  Identities=16%  Similarity=0.123  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHHhhcchhheecc----hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          216 DFWLLWFVYFLGVGAGVTVLNN----LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n----~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .+|..|...+++...-.+.-+|    ...+.++++.++  ..+..+.+.+..+++.+..|+++||++||+.+..
T Consensus        26 ~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~   99 (467)
T PRK09556         26 PFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPF   99 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHH
Confidence            4666666555544433222222    445667777764  3467888899999999999999999999987655

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=93.29  E-value=0.19  Score=49.38  Aligned_cols=74  Identities=15%  Similarity=0.024  Sum_probs=53.8

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCC--c--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--D--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~--~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      ..+.+|++.+|...+..++..|......+++....++.+..  +  +..+.++.-..-.+||+++|++.||+++|+.+
T Consensus       225 ~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l  302 (410)
T TIGR00885       225 LSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVL  302 (410)
T ss_pred             HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            35678888999988888888888766667777777665322  1  13345555567789999999999999887653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK12307 putative sialic acid transporter; Provisional

Probab=93.25  E-value=0.21  Score=48.33  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=51.9

Q ss_pred             CHHhhhhhhhHHHHHHHHH---HhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          207 KLGEAFVKADFWLLWFVYF---LGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~---~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      +.++.++++.+|.+...+.   +..+....+.+......++.|.+.  .....++..+++.+|++.+|+++||++||+.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~  299 (426)
T PRK12307        220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF  299 (426)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            4678888888886554332   222322233445555666666653  34567788899999999999999999988654


Q ss_pred             HH
Q 021110          282 CS  283 (317)
Q Consensus       282 ~r  283 (317)
                      ..
T Consensus       300 ~~  301 (426)
T PRK12307        300 SI  301 (426)
T ss_pred             HH
Confidence            43

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=93.22  E-value=0.24  Score=47.31  Aligned_cols=70  Identities=21%  Similarity=0.186  Sum_probs=49.0

Q ss_pred             hhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch-------hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT-------TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~-------~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +++++.+|+..++..-+.-++.--+..+.+++|.++.       ....++..+...++.+.+|.++||++||+.+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   89 (408)
T PRK09874         13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLR   89 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHH
Confidence            4467777776655433333444456777778877532       345667788899999999999999999877555

>TIGR00900 2A0121 H+ Antiporter protein

Probab=93.14  E-value=0.13  Score=47.89  Aligned_cols=67  Identities=15%  Similarity=0.036  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ||.++...++.....-+....+..+..+++.++  .....++..+...++.+.+|.++||++||+.+..
T Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~   69 (365)
T TIGR00900         1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIG   69 (365)
T ss_pred             CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHH
Confidence            354554444433333333333444555666553  3567888889999999999999999999876444

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=93.06  E-value=0.24  Score=47.79  Aligned_cols=69  Identities=10%  Similarity=-0.002  Sum_probs=49.0

Q ss_pred             hhHHHHHHHHHHhhc----chhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          215 ADFWLLWFVYFLGVG----AGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g----~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .++|++.+.+.+...    ..-++.-...++.++++.+..  ....+...++..++.+..|.++||++||+.+..
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~   83 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLA   83 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            466666665554443    233344456677888887643  457788999999999999999999999876444

>TIGR01272 gluP glucose/galactose transporter

Probab=92.99  E-value=0.28  Score=46.32  Aligned_cols=73  Identities=19%  Similarity=0.137  Sum_probs=57.0

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH---hCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA---LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a---l~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      ..++++.+|+..+.+++-.|+...+.+......++   ++.+  ......+.+..+-.+||++.+.++||+++++.+.
T Consensus       135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~  212 (310)
T TIGR01272       135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLA  212 (310)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            46778899999999999888887766656655543   3554  3457889999999999999999999999776543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=92.97  E-value=0.22  Score=50.16  Aligned_cols=74  Identities=15%  Similarity=0.217  Sum_probs=51.2

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      ..+.+|+++-|++-+.++|..|.=.-..+-.....++ .+++.  .....+.++...++|.+.|+++||+++++...
T Consensus       245 ~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~  320 (462)
T PRK15034        245 QLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTL  320 (462)
T ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHH
Confidence            4678999999999998888776544333344444444 22222  22345667889999999999999999886533

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=92.91  E-value=0.24  Score=46.73  Aligned_cols=75  Identities=16%  Similarity=0.187  Sum_probs=50.4

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      .++.++++.+|.+.+.+.+..+...........+.+ .++.++  .....+...+...+|+++.|+++||+++|+.+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~  276 (385)
T TIGR00710       199 FLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLR  276 (385)
T ss_pred             HHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            456778888888776655544433333333344443 456553  345677788899999999999999999876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03893 putative sialic acid transporter; Provisional

Probab=92.76  E-value=0.25  Score=48.87  Aligned_cols=68  Identities=21%  Similarity=0.316  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .++.+++.+++..-...+.......+.++++.+.  .....++..++..+|.+..|.++||++||+.+..
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   90 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI   90 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            4555555554433333333344567777888764  3567888889999999999999999999876444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=92.73  E-value=0.22  Score=48.28  Aligned_cols=70  Identities=14%  Similarity=0.153  Sum_probs=51.4

Q ss_pred             hhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +++||.+++..++..-...++...+..+.++++.++  ....++...+...++-+..|.++||++||+.+-.
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~   73 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFI   73 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHH
Confidence            458999988777755443344444556667777654  2456778888899999999999999999987544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=92.60  E-value=0.28  Score=45.63  Aligned_cols=47  Identities=13%  Similarity=0.111  Sum_probs=38.2

Q ss_pred             chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      -...+.++++.++  .....++..++..++.+.+|.++||++||+.+..
T Consensus        25 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~   73 (377)
T TIGR00890        25 LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAML   73 (377)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHH
Confidence            3456667777764  3568899999999999999999999999987544

>PRK10133 L-fucose transporter; Provisional

Probab=92.58  E-value=0.23  Score=49.10  Aligned_cols=76  Identities=18%  Similarity=0.206  Sum_probs=51.1

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .++.+++++||...+..++..+.-....+-.... .+ .+|.++  .........++..+||+..|.+.||+++|+....
T Consensus       251 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~  330 (438)
T PRK10133        251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA  330 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            3567889999987766655554432222222222 23 346553  3567889999999999999999999998876433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=92.52  E-value=0.34  Score=46.53  Aligned_cols=66  Identities=23%  Similarity=0.298  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      .|.++..+++....-..+.+....+.++.|.++  .....++..+++.+|++..|+++||++||+.+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~  289 (406)
T PRK11551        222 TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVL  289 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            344444444443333344455666777777653  356778888999999999999999999876543

>PRK10054 putative transporter; Provisional

Probab=92.44  E-value=0.27  Score=47.78  Aligned_cols=69  Identities=10%  Similarity=0.020  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHH-HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          215 ADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +++|.+.+..++....--++..=+.. +.+.+|.+.  ..+..++..+...++++..|.++||++||+.+..
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~   78 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLL   78 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHH
Confidence            36888888666654333333333333 345677764  4567788888899999999999999999875443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=92.41  E-value=0.38  Score=46.25  Aligned_cols=74  Identities=15%  Similarity=-0.081  Sum_probs=51.7

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      +.++.+|+++||.+.+..++..++-..+........+++|.++.  ....++..+...++.+.+|.+.||+++|+.
T Consensus       197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~  272 (382)
T TIGR00902       197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL  272 (382)
T ss_pred             hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH
Confidence            45789999999999888877666655666677776777777643  345556666666666666666666665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=92.39  E-value=0.22  Score=48.64  Aligned_cols=43  Identities=14%  Similarity=0.125  Sum_probs=33.5

Q ss_pred             HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       241 i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +.++++.++  ..+..+++.++.++|.+..|+++||++||+.+..
T Consensus        34 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~   78 (412)
T TIGR02332        34 MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG   78 (412)
T ss_pred             hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence            345556553  3568889999999999999999999999886443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=92.38  E-value=0.41  Score=45.89  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=47.0

Q ss_pred             CHHhhhhhhhHHHHHHHHHH-hhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          207 KLGEAFVKADFWLLWFVYFL-GVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~-~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      +.++.++++.+|......++ +...+.. .+-+....+..|.+.  ....+++..+++.+||+..|+++||+++|+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l  268 (381)
T PRK03633        192 SIWPMLKLRQARLGVNGCIISGIVLGSL-YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVL  268 (381)
T ss_pred             CHHHHHHhcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHH
Confidence            34667888888865442222 1111211 112344445556653  34578888899999999999999999988654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=92.24  E-value=0.45  Score=49.48  Aligned_cols=68  Identities=19%  Similarity=0.182  Sum_probs=47.5

Q ss_pred             hhhhHHHHHHHHHHhhcch---hhee-cchHHHHHHhCCCc-hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          213 VKADFWLLWFVYFLGVGAG---VTVL-NNLAQIGVALGVND-TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       213 ~t~~Fw~l~~~~~~~~g~G---l~~i-~n~~~i~~al~~~~-~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      +++.|+..+..+.+..-+.   +..- +-+.+|.+++|.++ .+++++..++.++.+-.+.|-+||.+|||+-
T Consensus        38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~  110 (599)
T PF06609_consen   38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF  110 (599)
T ss_pred             eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Confidence            4456666665444433322   2222 22578899998864 4577788889999999999999999999865

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK03545 putative arabinose transporter; Provisional

Probab=92.21  E-value=0.21  Score=48.01  Aligned_cols=46  Identities=17%  Similarity=0.194  Sum_probs=37.6

Q ss_pred             hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ..++.++++.+.  ....+++..+...++.+.+|.++||++||+.+..
T Consensus        32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   79 (390)
T PRK03545         32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIG   79 (390)
T ss_pred             hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence            578888888864  3567888888889999999999999999976444

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=92.21  E-value=0.32  Score=48.74  Aligned_cols=68  Identities=13%  Similarity=0.058  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHhhcchhheecchHHHHHH---hCCC--chhHHHHHHHhhhcccccccchhhhh-hhhhhhHHH
Q 021110          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVA---LGVN--DTTELLCLFSLCNFAGRLGSGVLSEH-YVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a---l~~~--~~~~~vsl~si~n~~GRl~~G~~SD~-l~r~~~~~r  283 (317)
                      .+|.+++..++-..+-..+..++....++   +|.+  ++...++..++.+.++.+.+|+++|| ++||+.+..
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~   84 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL   84 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence            46777766665333333344455555543   5665  34578899999999999999999999 899987544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=92.19  E-value=0.24  Score=49.90  Aligned_cols=97  Identities=21%  Similarity=0.252  Sum_probs=67.7

Q ss_pred             CCCCHHhhhhhhhHHHHHHHHHHhhcchhheecchHH-HHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhh--
Q 021110          204 EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRS--  278 (317)
Q Consensus       204 ~d~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~--  278 (317)
                      .+..++++++++.+|.+|+..++..-+=.++...... +-+-++++  +...+.++=-+...+-++++|.++|++.+|  
T Consensus       247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l  326 (466)
T KOG2532|consen  247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL  326 (466)
T ss_pred             CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            4668899999999999999887755444333333333 33446775  445677788888999999999999999885  


Q ss_pred             -hhHHH-HHHHHHHHHHHHHHHHH
Q 021110          279 -LLLCS-YLRSIKLGRKCKCFLVL  300 (317)
Q Consensus       279 -~~~~r-~~~~~~~~~~~~~~~~~  300 (317)
                       .+..| .+-+++.+..+++.+++
T Consensus       327 s~t~~rkifn~i~~~~~ai~l~~l  350 (466)
T KOG2532|consen  327 SETTVRKIFNTIAFGGPAVFLLVL  350 (466)
T ss_pred             chHhHHHHHHhHHHHHHHHHHHee
Confidence             11233 55566666666666555

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=91.82  E-value=0.42  Score=45.93  Aligned_cols=47  Identities=21%  Similarity=0.127  Sum_probs=34.9

Q ss_pred             chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      -...+.+..|++.  ......+..+++.+|+++.|+++||++||+.+..
T Consensus       306 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  354 (481)
T TIGR00879       306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLI  354 (481)
T ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            3444556667654  3456778888999999999999999998876443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00889 2A0110 nucleoside transporter

Probab=91.80  E-value=0.22  Score=48.87  Aligned_cols=76  Identities=9%  Similarity=-0.049  Sum_probs=49.9

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCC----------chhHHHHHHHhhhcccccccchhhhhhhh
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN----------DTTELLCLFSLCNFAGRLGSGVLSEHYVR  277 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~----------~~~~~vsl~si~n~~GRl~~G~~SD~l~r  277 (317)
                      ..+.+|++.||.+++..++..+.-..+........++.|++          ......++.++....+++..|.++||+++
T Consensus       201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~  280 (418)
T TIGR00889       201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI  280 (418)
T ss_pred             HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            45688899999888776665332212112222223344432          23567888888999999999999999999


Q ss_pred             hhhHHH
Q 021110          278 SLLLCS  283 (317)
Q Consensus       278 ~~~~~r  283 (317)
                      |+.+..
T Consensus       281 r~~l~~  286 (418)
T TIGR00889       281 KKVMLL  286 (418)
T ss_pred             HHHHHH
Confidence            876443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00897 2A0118 polyol permease family

Probab=91.76  E-value=0.37  Score=46.66  Aligned_cols=69  Identities=19%  Similarity=0.179  Sum_probs=49.0

Q ss_pred             hhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +...|.+...+.+..+.+.. .+-...+.++++.++  ..+..++..++..++.+..|.+.||++||+.+..
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~   83 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLE-QGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMI   83 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhH-HHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            33445555555555565533 334456667887763  4568899999999999999999999999987554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11663 regulatory protein UhpC; Provisional

Probab=91.62  E-value=0.44  Score=46.75  Aligned_cols=68  Identities=15%  Similarity=0.150  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      -+|.+++.+++.......+-.-+.++.+++|.+.  ..+..++..+...++++..|+++||++||+.+..
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~   93 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGI   93 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHH
Confidence            3444444444433322233334566777787764  3567888999999999999999999999876444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=91.51  E-value=0.35  Score=44.35  Aligned_cols=66  Identities=26%  Similarity=0.318  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          218 WLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       218 w~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      |.+....++..............+.++++.++  .....++..+.+.++.+.+|.++||++||+.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~   69 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLL   69 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHH
Confidence            44444443333333333344555566666653  3567788889999999999999999999875433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=91.37  E-value=0.61  Score=45.67  Aligned_cols=75  Identities=8%  Similarity=0.037  Sum_probs=49.5

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhh-eecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVT-VLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      ++++.++++.+|.+.+.+.+....+.. +..-..++. +.+|.+.  .....++..+...++..+.|+++||++||+..
T Consensus       234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~  312 (432)
T PRK10406        234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSM  312 (432)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            467788899999877665554333322 223344444 3456653  23566677778888999999999999988653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=91.36  E-value=0.74  Score=46.44  Aligned_cols=70  Identities=9%  Similarity=0.034  Sum_probs=46.6

Q ss_pred             hhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .+.+|+-++.+..+...=.+.---..++.+ +++.+.  ..+++++..+..+++|+..|.+.||+|.|+....
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~  105 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVF  105 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            346777776665544433332222334444 566653  4568888999999999999999999998876444

>TIGR00899 2A0120 sugar efflux transporter

Probab=91.27  E-value=0.66  Score=43.58  Aligned_cols=73  Identities=18%  Similarity=0.177  Sum_probs=46.1

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      ++.++++++|.++...++..+....+........ +.+|.++.  ....++..+.+..+++..|.++||++||+.+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~  268 (375)
T TIGR00899       193 RGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM  268 (375)
T ss_pred             hhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH
Confidence            3456777888877766555443333333333333 44566532  3445566667788999999999999988653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=91.25  E-value=0.25  Score=47.92  Aligned_cols=72  Identities=18%  Similarity=0.180  Sum_probs=48.2

Q ss_pred             hhhhhhHHHHHHHHHH-hhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          211 AFVKADFWLLWFVYFL-GVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       211 ~l~t~~Fw~l~~~~~~-~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ..++++|+.+++..++ ..+.+.. .--+..+.++++.+.  ..+..+...+...++.+..|.++||++||+.+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~   87 (417)
T PRK10489         13 LKTHPAFRAVFIARFISIFGLGLL-GVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL   87 (417)
T ss_pred             HHhCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Confidence            3457788877775433 3333333 223344556666553  3567888899999999999999999999876443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=91.10  E-value=0.53  Score=44.54  Aligned_cols=47  Identities=21%  Similarity=0.387  Sum_probs=37.0

Q ss_pred             chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ....+.++++.++  .....++..++..++.+..|.++||++||+.+..
T Consensus        34 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   82 (405)
T TIGR00891        34 VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVT   82 (405)
T ss_pred             HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            3455666777764  3567888999999999999999999999986554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=91.03  E-value=0.59  Score=44.73  Aligned_cols=74  Identities=12%  Similarity=0.108  Sum_probs=49.0

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      ++.++++.+|...+...+.......+.+-...+. +.+|.++  .....+..++.+.+|++..|+++||++||+.+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~  273 (392)
T PRK10473        197 SESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLML  273 (392)
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            4677888888776665554444333333222333 3456653  245667788899999999999999999876543

>TIGR00895 2A0115 benzoate transport

Probab=90.89  E-value=0.6  Score=43.84  Aligned_cols=64  Identities=23%  Similarity=0.280  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhh
Q 021110          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRS  278 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~  278 (317)
                      +.+|.+++.+++.......+.+....+.+..+.+.  .....++.++++.+|+++.|+++||++||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR  315 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence            34555555554443333223333344555666653  34677888999999999999999999987

>TIGR00901 2A0125 AmpG-related permease

Probab=90.82  E-value=0.6  Score=44.00  Aligned_cols=76  Identities=14%  Similarity=0.095  Sum_probs=45.8

Q ss_pred             HHhhhhhhh---HHHHHHHHHHhhcchhheecchHHHHHHhCCCchh--HHHHHHH-hhhcccccccchhhhhhhhhhhH
Q 021110          208 LGEAFVKAD---FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTT--ELLCLFS-LCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       208 ~~~~l~t~~---Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~~--~~vsl~s-i~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      +++.++++.   +|.+.+..++...+............+++|.+...  ...++.+ +...+|.+++|+++||++||+.+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l  278 (356)
T TIGR00901       199 IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL  278 (356)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            345555554   66666554443332223334445555667766432  3444444 56789999999999999988774


Q ss_pred             HH
Q 021110          282 CS  283 (317)
Q Consensus       282 ~r  283 (317)
                      ..
T Consensus       279 ~~  280 (356)
T TIGR00901       279 LL  280 (356)
T ss_pred             HH
Confidence            43

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=90.69  E-value=0.62  Score=42.67  Aligned_cols=65  Identities=28%  Similarity=0.289  Sum_probs=49.9

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021110          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL  279 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~  279 (317)
                      +.+|.+++..++.......+......+.++. +.++  .....++..+.+.+|++.+|.++||++||+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  242 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR  242 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            6777777777777666666666666676665 5543  346778888999999999999999999987

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=90.51  E-value=0.63  Score=44.02  Aligned_cols=76  Identities=9%  Similarity=-0.036  Sum_probs=49.9

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .++.++++.+|...+..++..+.-..+........+ ..|.+.  .....++.+++..+|++..|++.||++||+.+..
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~  265 (377)
T PRK11102        187 FASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRF  265 (377)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            345677778887666555444333333333333443 346553  3457778889999999999999999999876443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=90.40  E-value=0.7  Score=44.34  Aligned_cols=74  Identities=15%  Similarity=0.005  Sum_probs=47.7

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      +.++.+|++.+|.+.+..++....-..+.+......++.|.++  ...+.++..+.+..+++..|.+.||+++++.
T Consensus       197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  272 (382)
T PRK11128        197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL  272 (382)
T ss_pred             hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence            5688999999998877655543332223333344446667653  2345556667777778888888888777655

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=90.38  E-value=0.57  Score=46.81  Aligned_cols=46  Identities=15%  Similarity=0.037  Sum_probs=35.0

Q ss_pred             hHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          238 LAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       238 ~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ...+.+++|.+..  ....+...++..+|.+..|+++||++||+.+..
T Consensus        59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~  106 (476)
T PLN00028         59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAF  106 (476)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            3456677787643  345667778889999999999999999976555

>TIGR00900 2A0121 H+ Antiporter protein

Probab=90.35  E-value=0.78  Score=42.51  Aligned_cols=74  Identities=19%  Similarity=0.143  Sum_probs=50.5

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      .++.++++.+|.+.+..++..........+..+. .+. ++.++  .....++.++++.+|++..|.++|+.+|++..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  280 (365)
T TIGR00900       203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM  280 (365)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence            4567888889988877666555554444233333 333 46553  34567778889999999999999998877543

>PRK15075 citrate-proton symporter; Provisional

Probab=90.23  E-value=0.89  Score=44.53  Aligned_cols=69  Identities=13%  Similarity=0.058  Sum_probs=42.7

Q ss_pred             hhhhhHHHHHHHHHHhhcchhheecc-hHHHHHH-hCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          212 FVKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVA-LGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       212 l~t~~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a-l~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      .+++..|.+.....+....+...+.+ ...+.+. +|.+..  .....+.++++.+|+++.|+++||++||+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~  306 (434)
T PRK15075        234 AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPV  306 (434)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            44455555433333333333333333 5555554 576532  345667888999999999999999998764

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=90.02  E-value=0.48  Score=44.13  Aligned_cols=45  Identities=18%  Similarity=0.192  Sum_probs=36.2

Q ss_pred             HHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       239 ~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ..+.+++|.++  .....++..++..++.+..|+++||++||+.+..
T Consensus        19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   65 (379)
T TIGR00881        19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI   65 (379)
T ss_pred             HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH
Confidence            45666777764  3568889999999999999999999999876444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.00  E-value=0.64  Score=44.47  Aligned_cols=88  Identities=16%  Similarity=0.054  Sum_probs=54.2

Q ss_pred             hhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHHHHHH
Q 021110          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKL  290 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r~~~~~~~  290 (317)
                      .+-||+++++++|---+=.-.|.--....+ .+|.+.+  ...-|.+-.-++.---.+|.++|+.|++.+    ....+.
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~----wv~~a~  338 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW----WVASAC  338 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh----hHHHHH
Confidence            368999999888765444444433333333 3466532  223334334455556678999999999865    334556


Q ss_pred             HHHHHHHHHHHHhhc
Q 021110          291 GRKCKCFLVLFEKFQ  305 (317)
Q Consensus       291 ~~~~~~~~~~~~~~~  305 (317)
                      .++..+|..+|-+|-
T Consensus       339 ~~tl~~H~~l~Ft~l  353 (459)
T KOG4686|consen  339 ILTLLGHSGLFFTFL  353 (459)
T ss_pred             HHHHHHhhhHHhhhc
Confidence            667899998855543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=89.88  E-value=0.46  Score=43.93  Aligned_cols=42  Identities=24%  Similarity=0.235  Sum_probs=33.3

Q ss_pred             HHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          240 QIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       240 ~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      .+.++++.+.  .....++..+.+.++.+..|.++||++||+.+
T Consensus        22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l   65 (352)
T PF07690_consen   22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVL   65 (352)
T ss_dssp             HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE
Confidence            5666777653  45688889999999999999999999988753

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=89.83  E-value=0.95  Score=43.77  Aligned_cols=69  Identities=20%  Similarity=0.286  Sum_probs=46.5

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch-hHHHHHHHhhhcccccccchhhhhhhhhh
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVRSL  279 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~-~~~vsl~si~n~~GRl~~G~~SD~l~r~~  279 (317)
                      +++.++++++|.+++.++|..+.-..+.+=+.++.++.+++.. ....++.   ...|-+..|+++|++.||+
T Consensus       185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~---~~~g~~g~~~~~d~~~r~~  254 (368)
T TIGR00903       185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALA---ILAGLIGVAVIPDRVARAG  254 (368)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHH---HHHHHHHHHHhhHHhhhhh
Confidence            5688999999999998888766655554446677776666532 2233333   3344455699999998753

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00898 2A0119 cation transport protein

Probab=89.65  E-value=0.65  Score=46.18  Aligned_cols=77  Identities=13%  Similarity=0.044  Sum_probs=47.5

Q ss_pred             CCHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCchhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          206 FKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       206 ~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .+.++.++++.+|...+...+.+.......+......+.++.+ ......+.++....|+++.|+++||++||+.+..
T Consensus       314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~  390 (505)
T TIGR00898       314 YSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAA  390 (505)
T ss_pred             CcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4788999999998887766554433222111111111222222 2233446677788899999999999999865433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=89.50  E-value=0.9  Score=43.77  Aligned_cols=76  Identities=12%  Similarity=-0.129  Sum_probs=47.8

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .++.++++.+|.+.+.+++..............+. +.++.++.  ........++..+|++..|.++||+++|+....
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~  286 (406)
T PRK15402        208 YKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRM  286 (406)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            35678888999887766554433222222233333 34566533  233444566788999999999999998765433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=89.40  E-value=0.96  Score=45.70  Aligned_cols=74  Identities=16%  Similarity=0.173  Sum_probs=43.7

Q ss_pred             hhhhhh-hHHHHHHHHHHhhcchhheecchHHH-HHHhCCCch--hHHHHHHHhhhcccccccchhhhh-hhhhhhHHH
Q 021110          210 EAFVKA-DFWLLWFVYFLGVGAGVTVLNNLAQI-GVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEH-YVRSLLLCS  283 (317)
Q Consensus       210 ~~l~t~-~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~-l~r~~~~~r  283 (317)
                      +.++.+ .+|.++...++...+--.+...+... .+.+|.++.  ...++..........+.+|+++|| ++||+.+..
T Consensus        15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~   93 (500)
T PRK09584         15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIML   93 (500)
T ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            344554 58988887766554432333333333 356777643  334444444444445688999999 599876444

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=89.37  E-value=0.74  Score=50.64  Aligned_cols=74  Identities=15%  Similarity=0.114  Sum_probs=48.5

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchH-HHHHHhCCCc----hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLA-QIGVALGVND----TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~-~i~~al~~~~----~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +.+++.+|+.+++..++..-...++..-+. .+...++.+.    ..+..+++.+...++.+.+|+++||++||+.+..
T Consensus         4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~   82 (1146)
T PRK08633          4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRI   82 (1146)
T ss_pred             chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHH
Confidence            568888999998877775433322222121 2222333332    2346677888899999999999999999976554

>PRK11043 putative transporter; Provisional

Probab=89.28  E-value=1.1  Score=43.13  Aligned_cols=75  Identities=11%  Similarity=0.057  Sum_probs=47.6

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      +.++.++++++|...+.+.+..+.-..+.+-...+.+..|.+..  ........++..+|++..+.+.||+++|+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~  271 (401)
T PRK11043        195 TFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL  271 (401)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            45678888899877666555443333333333444555666532  3344455677788899999999998877643

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=89.25  E-value=1.2  Score=42.57  Aligned_cols=40  Identities=23%  Similarity=0.140  Sum_probs=30.4

Q ss_pred             HHHhCCCchhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          242 GVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       242 ~~al~~~~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      .++.+........+++.++..+||+..|.++||+++|+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~  282 (399)
T PRK05122        243 YAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVA  282 (399)
T ss_pred             HHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            3444544445667788899999999999999999887543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=89.18  E-value=0.88  Score=43.60  Aligned_cols=61  Identities=11%  Similarity=0.106  Sum_probs=42.0

Q ss_pred             HHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          223 VYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       223 ~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .+....+.|+....--..+.+++|.++  .....++..+...++.+..|.++||++||+.+..
T Consensus        24 ~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~   86 (399)
T PRK05122         24 TFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVF   86 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHH
Confidence            333344444432222233566777664  3567888999999999999999999999988666

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=89.01  E-value=0.5  Score=46.35  Aligned_cols=48  Identities=17%  Similarity=0.142  Sum_probs=38.3

Q ss_pred             cchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          236 NNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       236 ~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .....+.+++|.+.  .....+...+++.++.+..|.++||++||+.+..
T Consensus        23 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   72 (485)
T TIGR00711        23 VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLI   72 (485)
T ss_pred             HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHH
Confidence            34567778888753  4568889999999999999999999999876433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=88.84  E-value=1  Score=43.44  Aligned_cols=47  Identities=21%  Similarity=0.172  Sum_probs=36.9

Q ss_pred             chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ....|.++++.++  .....++..++..+|.+.+|.++||++||+.+..
T Consensus        40 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~   88 (426)
T PRK12307         40 IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW   88 (426)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            3345566777764  3567888899999999999999999999877554

>PRK11043 putative transporter; Provisional

Probab=88.80  E-value=0.83  Score=43.88  Aligned_cols=51  Identities=27%  Similarity=0.280  Sum_probs=40.6

Q ss_pred             heecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          233 TVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       233 ~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ++.-...++.++++.++  .....++..++..+|.+.+|.++||++||+.+..
T Consensus        24 ~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~   76 (401)
T PRK11043         24 MYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLA   76 (401)
T ss_pred             HHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHH
Confidence            44455667778888764  3568889999999999999999999999987544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=88.35  E-value=0.94  Score=43.35  Aligned_cols=51  Identities=16%  Similarity=0.163  Sum_probs=40.2

Q ss_pred             heecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          233 TVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       233 ~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ++...+.++.++++.++.  ....++..++..++.+..|+++||++||+.+..
T Consensus        21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~   73 (392)
T PRK10473         21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIP   73 (392)
T ss_pred             HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHH
Confidence            445567788888888753  457788888999999999999999999865433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=88.15  E-value=1.7  Score=42.80  Aligned_cols=38  Identities=16%  Similarity=0.088  Sum_probs=31.3

Q ss_pred             CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          246 GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       246 ~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +.+.  ..+..+...++..+|.+.+|+++||++||+.+..
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~   98 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA   98 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHH
Confidence            5553  3467889999999999999999999999976544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=88.06  E-value=1.1  Score=42.97  Aligned_cols=77  Identities=16%  Similarity=-0.026  Sum_probs=50.7

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHH-hhhcccccccchhhhhhhhhhhHHH
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFS-LCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~s-i~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +.++.+|++.+|.+....++...+......-.....+++|++..  .....+.. +...+|.+..|.+.||+++|+....
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~  279 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFIL  279 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            45788888888887776665544333333334455667777643  33444444 4667889999999999998866443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=88.00  E-value=1.2  Score=44.24  Aligned_cols=46  Identities=11%  Similarity=0.122  Sum_probs=35.3

Q ss_pred             hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ..++.++++.+.  .....++..+...++..++|+++||++||+.+-.
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~   89 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIA   89 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHh
Confidence            556667777753  3456777778888999999999999999876443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=88.00  E-value=1.9  Score=42.67  Aligned_cols=73  Identities=16%  Similarity=0.198  Sum_probs=61.4

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      +..+.+|++.-|..+++.++..+...+...-++++-++. |.+.  .+...-+++++..+|-++.|.++|| +.++.
T Consensus       203 ~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~  278 (394)
T COG2814         203 TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA  278 (394)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH
Confidence            458899999999999999999999999888889998876 4443  3556678999999999999999999 55444

>TIGR00895 2A0115 benzoate transport

Probab=87.40  E-value=1.3  Score=41.46  Aligned_cols=47  Identities=19%  Similarity=0.090  Sum_probs=35.8

Q ss_pred             chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ....+.+.++.+.  .....++..++..+|.+..|.++||++||+.+..
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~   87 (398)
T TIGR00895        39 AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLW   87 (398)
T ss_pred             hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Confidence            3455666777653  3456778888999999999999999998876544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=87.37  E-value=1.3  Score=43.11  Aligned_cols=43  Identities=12%  Similarity=0.096  Sum_probs=31.7

Q ss_pred             HHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          241 IGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       241 i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +.+.+|.+..  .+..++..+...+.++..|.++||++||+.+..
T Consensus        37 ~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~   81 (400)
T PRK11646         37 FVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVT   81 (400)
T ss_pred             HHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHH
Confidence            3456676643  456677777788889999999999999876444

>PRK10133 L-fucose transporter; Provisional

Probab=87.21  E-value=1.3  Score=43.89  Aligned_cols=68  Identities=19%  Similarity=0.153  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .|+.++++++...-.-.+...-..++.++++.++  ..+..+.+.++..++-+..|.++||++||+.+..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~   96 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            5666666665443333334444566666777764  3467888999999999999999999999987554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=87.19  E-value=0.93  Score=45.43  Aligned_cols=47  Identities=19%  Similarity=0.212  Sum_probs=38.4

Q ss_pred             chHHHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          237 NLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       237 n~~~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      -+.+|.++++.+  +.+..++...++.+.+-+.+|.++||++||+.+..
T Consensus        28 a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~   76 (495)
T PRK14995         28 AAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLML   76 (495)
T ss_pred             HHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            357788888775  34678888899999999999999999999987544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=86.71  E-value=1.1  Score=44.04  Aligned_cols=43  Identities=16%  Similarity=0.084  Sum_probs=33.5

Q ss_pred             HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       241 i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ..++.|.++  .....++..++..+|.+.+|+++||++||+.+..
T Consensus        52 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~   96 (438)
T TIGR00712        52 YLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPA   96 (438)
T ss_pred             HHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHH
Confidence            334456653  3567888999999999999999999999876554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09528 lacY galactoside permease; Reviewed

Probab=86.17  E-value=0.8  Score=44.47  Aligned_cols=74  Identities=7%  Similarity=-0.106  Sum_probs=44.0

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh----CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL----GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al----~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      .++.+|++.+|.+.+.+.+....-.+..........+.    +.+.  .....++..+.+.+|.+.+|+++||+++|+.+
T Consensus       216 ~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~  295 (420)
T PRK09528        216 ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL  295 (420)
T ss_pred             HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence            34677788888766544333322112222222322222    2221  23566777788999999999999999998753

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=86.12  E-value=2.2  Score=41.28  Aligned_cols=70  Identities=13%  Similarity=0.123  Sum_probs=45.4

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHH-HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhh
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYV  276 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~  276 (317)
                      ..++.++++.+|.+.+..++..+..........+ ..+.+|.+.  .....+..++++.+|+++.|.+.||..
T Consensus       208 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~  280 (394)
T PRK10213        208 NTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV  280 (394)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3467889999999877655544433222233333 344566653  345667788889999998888888843

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=86.07  E-value=2.4  Score=41.00  Aligned_cols=66  Identities=17%  Similarity=0.160  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhhcchhhe--ec-chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          218 WLLWFVYFLGVGAGVTV--LN-NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       218 w~l~~~~~~~~g~Gl~~--i~-n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      |++...++.+.-...+.  ++ -+..+.++++.++  ....+++..++..++-+..|.++||++||+.+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~   79 (393)
T PRK09705          9 FMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAI   79 (393)
T ss_pred             HHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHH
Confidence            66666665555444332  11 2345666777764  3568888888999999999999999999987544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=85.82  E-value=2.1  Score=42.26  Aligned_cols=80  Identities=19%  Similarity=0.103  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHHHHHHHHH
Q 021110          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRK  293 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r~~~~~~~~~~  293 (317)
                      ..|.+-+.-|+...+..+..+=+.+|+++++.+.  +-..+|+.+.+-.+|-.....+.||+.||+-     +...+.+.
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~l-----Ll~~l~lF   88 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRL-----LLGLLALF   88 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-----HHHHHHHH
Confidence            4577777778888888999999999999999975  3479999999999999999999999999864     33444445


Q ss_pred             HHHHHHH
Q 021110          294 CKCFLVL  300 (317)
Q Consensus       294 ~~~~~~~  300 (317)
                      .++|++-
T Consensus        89 i~~n~l~   95 (394)
T COG2814          89 IVSNLLS   95 (394)
T ss_pred             HHHHHHH
Confidence            5666554

>TIGR00893 2A0114 d-galactonate transporter

Probab=85.78  E-value=0.67  Score=43.08  Aligned_cols=46  Identities=17%  Similarity=0.235  Sum_probs=36.5

Q ss_pred             hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ...+.+++|.++  .....++..+++.++.+..|.++||++||+.+..
T Consensus        17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~   64 (399)
T TIGR00893        17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAV   64 (399)
T ss_pred             HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHH
Confidence            344566677653  3578889999999999999999999999877544

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=85.74  E-value=1.2  Score=41.96  Aligned_cols=51  Identities=22%  Similarity=0.286  Sum_probs=40.0

Q ss_pred             heecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          233 TVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       233 ~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ++.-....+.++++.++  .....++..++..+|++..|.++||++||+.+..
T Consensus         9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~   61 (377)
T PRK11102          9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILG   61 (377)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHH
Confidence            34455667788888764  3567889999999999999999999999876443

>TIGR00899 2A0120 sugar efflux transporter

Probab=85.10  E-value=1.5  Score=41.19  Aligned_cols=41  Identities=7%  Similarity=-0.154  Sum_probs=31.5

Q ss_pred             HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       241 i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      +.+++|.++  .....++..+...++....|.++||++||+.+
T Consensus        24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~   66 (375)
T TIGR00899        24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGL   66 (375)
T ss_pred             HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Confidence            445667653  34567788888899999999999999988763

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=85.02  E-value=1.8  Score=44.07  Aligned_cols=40  Identities=15%  Similarity=0.237  Sum_probs=30.9

Q ss_pred             HHhCCCc--hhHHHHHHHhhhcccccccchhhhhh-hhhhhHH
Q 021110          243 VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHY-VRSLLLC  282 (317)
Q Consensus       243 ~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l-~r~~~~~  282 (317)
                      +.+|.++  +....+...+...++.+..|+++||+ |||+.+.
T Consensus        38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~il   80 (493)
T PRK15462         38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVM   80 (493)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence            3466664  34567778888899999999999999 9887643

>PF13347 MFS_2: MFS/sugar transport protein

Probab=84.77  E-value=2.5  Score=41.21  Aligned_cols=77  Identities=18%  Similarity=0.197  Sum_probs=54.1

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCc-hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND-TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~-~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .+++..++++|+.++...++...+-.+.........+.. +.++ .+.+..+..+.+.++-+++++++||++||+.+.-
T Consensus       217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~  295 (428)
T PF13347_consen  217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII  295 (428)
T ss_pred             chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence            467888899999988888876444443333444444543 4443 3456667788899999999999999999987554

>PRK10504 putative transporter; Provisional

Probab=83.77  E-value=2.2  Score=41.92  Aligned_cols=74  Identities=14%  Similarity=0.011  Sum_probs=48.4

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecc-hHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .+.++++.|+...+..++...+ ...... .....+. +|.+.  ..+......+....++++.|.++||++||+.+..
T Consensus       255 ~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~  332 (471)
T PRK10504        255 LKLFRTRTFSLGLAGSFAGRIG-SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVA  332 (471)
T ss_pred             HHHhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            4688999999887766655433 333333 3333443 56553  2345566677788888999999999998876543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=83.73  E-value=3.6  Score=41.05  Aligned_cols=45  Identities=11%  Similarity=0.114  Sum_probs=31.9

Q ss_pred             hHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          238 LAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       238 ~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      +..+.+ .+|.+.  .....+...++..+|++..|+++||++||+.+.
T Consensus       273 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  320 (490)
T PRK10642        273 MPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVI  320 (490)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            444443 356653  234556677889999999999999999987543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=83.60  E-value=2.6  Score=42.58  Aligned_cols=42  Identities=12%  Similarity=0.054  Sum_probs=30.8

Q ss_pred             HHHhCCCc--hhHHHHHHHhhhcccccccchhhhh-hhhhhhHHH
Q 021110          242 GVALGVND--TTELLCLFSLCNFAGRLGSGVLSEH-YVRSLLLCS  283 (317)
Q Consensus       242 ~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~-l~r~~~~~r  283 (317)
                      .+.+|.++  +...++.+....++.-+.+|+++|| +|||+.+..
T Consensus        42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~   86 (489)
T PRK10207         42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVL   86 (489)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHH
Confidence            34577664  3456666777777777889999999 999987554

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=83.57  E-value=2.8  Score=41.14  Aligned_cols=33  Identities=15%  Similarity=-0.036  Sum_probs=29.1

Q ss_pred             hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          251 TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       251 ~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ...++...++..+|-+++|.++||++||+.+-.
T Consensus        58 ~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~   90 (479)
T PRK10077         58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKI   90 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            467889999999999999999999999987544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=83.32  E-value=1.1  Score=44.58  Aligned_cols=62  Identities=18%  Similarity=0.134  Sum_probs=43.1

Q ss_pred             HHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccee
Q 021110          241 IGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVE  309 (317)
Q Consensus       241 i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (317)
                      +.++.+.+..  .++-|.+++.=+++.+.+|.+|||-..|+     ++.+.|++.++++++.  .|.+++.
T Consensus        55 l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~-----fm~~gLilsai~nil~--Gfs~s~~  118 (448)
T COG2271          55 LIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY-----FMAFGLILSAIVNILF--GFSPSLF  118 (448)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce-----eehHHHHHHHHHHHHH--hhhhHHH
Confidence            4455556533  46889999999999999999999988776     4455555555555555  4444433

>PRK03893 putative sialic acid transporter; Provisional

Probab=83.30  E-value=2.4  Score=41.88  Aligned_cols=47  Identities=15%  Similarity=0.105  Sum_probs=35.8

Q ss_pred             cchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          236 NNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       236 ~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      .....+.+ .+|.+.  .....+...+++.+|++..|+++||++||+.+.
T Consensus       296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~  345 (496)
T PRK03893        296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYV  345 (496)
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            34555554 566653  456788899999999999999999999886543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=83.28  E-value=2.5  Score=44.23  Aligned_cols=72  Identities=13%  Similarity=0.123  Sum_probs=53.4

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHh-hhcccccccchhhhhhhhh
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSL-CNFAGRLGSGVLSEHYVRS  278 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si-~n~~GRl~~G~~SD~l~r~  278 (317)
                      ..++.++++.||...+..++..+.-..+..-+....+. ++.+.  +.++.++..+ ...+|.++.|+++||++.+
T Consensus       322 ~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       322 IIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            45789999999999998888777666666667777665 46653  3445555555 4679999999999999854

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=82.93  E-value=2.5  Score=40.63  Aligned_cols=73  Identities=11%  Similarity=0.033  Sum_probs=44.3

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheec-chHHHHHHh----CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLN-NLAQIGVAL----GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL  279 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~-n~~~i~~al----~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~  279 (317)
                      +.++.+|++++|.+.+..++.. ....... -.....++.    +.+.  .....++..+.+.++.+..|.+.||+++|+
T Consensus       207 ~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~  285 (396)
T TIGR00882       207 LALELFRQRKFWMFVLYVVGVA-CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN  285 (396)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            4578899999987665443322 2222121 122222332    1111  234566777888999999999999999886


Q ss_pred             h
Q 021110          280 L  280 (317)
Q Consensus       280 ~  280 (317)
                      .
T Consensus       286 ~  286 (396)
T TIGR00882       286 A  286 (396)
T ss_pred             h
Confidence            5

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=82.83  E-value=3.3  Score=39.64  Aligned_cols=45  Identities=18%  Similarity=0.175  Sum_probs=36.0

Q ss_pred             HHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       239 ~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ..+.++++.++  .....+...++..+|.+..|.++||++||+.+..
T Consensus        39 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (406)
T PRK11551         39 PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIV   85 (406)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            35667777764  3567888899999999999999999999977544

>PTZ00207 hypothetical protein; Provisional

Probab=82.81  E-value=2.5  Score=44.02  Aligned_cols=65  Identities=11%  Similarity=0.051  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHHhhcchhheecch--HHHHHHhCCCchh--HHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          216 DFWLLWFVYFLGVGAGVTVLNNL--AQIGVALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~--~~i~~al~~~~~~--~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      +||.+...+.+...+|.++..++  .++.+++|++...  ...++ ...-+.+-+.+|+++||+++|+.+
T Consensus        26 Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vl   94 (591)
T PTZ00207         26 RFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIF   94 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHH
Confidence            34455555555555666665554  5677778876432  22222 122233455789999999998653

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=82.70  E-value=1.7  Score=42.10  Aligned_cols=74  Identities=16%  Similarity=0.134  Sum_probs=45.3

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HH-hCCC-chhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VA-LGVN-DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a-l~~~-~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      .+++.++++.||.+.+..++...+. ...+...... +. ++.+ ....+.++..++..+|.+++|.++||++||+.+
T Consensus       214 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~  290 (437)
T TIGR00792       214 IFKALFKNDQLLILCLAYLFYNLAF-NIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF  290 (437)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHH-HHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            3467788899998877665543322 2222221111 11 1211 123455667888999999999999999988654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=82.56  E-value=2.6  Score=40.39  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=28.8

Q ss_pred             hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          251 TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       251 ~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ....++..++..++.+.+|.++||++||+.+..
T Consensus        74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~  106 (481)
T TIGR00879        74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI  106 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence            467888999999999999999999999876544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=80.77  E-value=4  Score=39.34  Aligned_cols=75  Identities=15%  Similarity=0.077  Sum_probs=45.9

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhh-eecchHHHHHHhCCCch--hHHHHHHH-hhhcccccccchhhhhhhhhhhH
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVT-VLNNLAQIGVALGVNDT--TELLCLFS-LCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i~~al~~~~~--~~~vsl~s-i~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      ++.+.++++++|.+.+..++....... ...+...+.+.+|.+..  ....+..+ +...+|.++.|.+.||+++|+..
T Consensus       201 ~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l  279 (402)
T PRK11902        201 PLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL  279 (402)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            356788999999877765554332221 11222234455676643  23333444 35788999999999999987654

>PRK12382 putative transporter; Provisional

Probab=80.77  E-value=5  Score=38.27  Aligned_cols=42  Identities=12%  Similarity=-0.050  Sum_probs=30.9

Q ss_pred             HHHHhCCCchhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       241 i~~al~~~~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      ..++.+.+......+..++++.+|++..|.++||+++|+.+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~  283 (392)
T PRK12382        242 YFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAI  283 (392)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehH
Confidence            334445544445566778888999999999999999876643

>PRK09848 glucuronide transporter; Provisional

Probab=80.64  E-value=2.1  Score=42.04  Aligned_cols=53  Identities=11%  Similarity=-0.003  Sum_probs=36.9

Q ss_pred             hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH-HHHHHHHHHHHHHH
Q 021110          245 LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS-YLRSIKLGRKCKCF  297 (317)
Q Consensus       245 l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r-~~~~~~~~~~~~~~  297 (317)
                      +|.+.  .....++..++.++.-+.+|+++||.++|++..| |+...++..+..+.
T Consensus        39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            35543  3457778889999999999999999977766566 66555444443333

>PRK15011 sugar efflux transporter B; Provisional

Probab=80.47  E-value=3.6  Score=39.58  Aligned_cols=46  Identities=11%  Similarity=0.109  Sum_probs=31.4

Q ss_pred             chHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          237 NLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       237 n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      ...... +.++.++  .....++..+...+|+++.|.++||++||+.+.
T Consensus       238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~  286 (393)
T PRK15011        238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMR  286 (393)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            344444 3456653  234556666777889999999999999986543

>PRK09952 shikimate transporter; Provisional

Probab=80.27  E-value=4.3  Score=39.88  Aligned_cols=72  Identities=11%  Similarity=-0.043  Sum_probs=40.2

Q ss_pred             hhhhhhHHHHHHHHHHhhcchhh-eecchHH-HHHHhCCCchh--HHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110          211 AFVKADFWLLWFVYFLGVGAGVT-VLNNLAQ-IGVALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       211 ~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~-i~~al~~~~~~--~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~  282 (317)
                      .++++.+|.+-+...+....+.. ....... +.+.++.++..  ....+.++.+.+|.+++|+++||++||+.+.
T Consensus       245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~  320 (438)
T PRK09952        245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYI  320 (438)
T ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            55666777664432222222221 2222222 22345655432  2334566778899999999999999986543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.58
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.23
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.82
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	94.05
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	93.92
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	92.4
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	92.34
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	92.24
2cfq_A	417	Lactose permease; transport, transport mechanism,	91.99
2xut_A	524	Proton/peptide symporter family protein; transport	90.27
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	87.42
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	85.79

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.58  E-value=0.00028  Score=66.38  Aligned_cols=75  Identities=19%  Similarity=0.228  Sum_probs=61.0

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HHHh-CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~al-~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      ++++.++++.+|...+..++..+....+......+ .++. |.+.  .....++..+++.+||++.|+++||++||+.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~  328 (438)
T 3o7q_A          250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL  328 (438)
T ss_dssp             HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            45678889999999999888888777777777777 6665 6653  35677888999999999999999999988653

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.23  E-value=0.00044  Score=65.14  Aligned_cols=73  Identities=10%  Similarity=0.029  Sum_probs=57.0

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhh--hhhhh
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHY--VRSLL  280 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l--~r~~~  280 (317)
                      .++.++++.+|.+.+..++.......+......+.++ +|.+.  .....++.++++.+|+++.|+++||+  +||+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~  322 (451)
T 1pw4_A          245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA  322 (451)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence            4678899999999988887766655566666666666 56653  35678889999999999999999999  77654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.82  E-value=0.0049  Score=58.35  Aligned_cols=74  Identities=14%  Similarity=0.076  Sum_probs=53.1

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ..+|+++||.+...+++...+-.++..-+....+ .+|.++  .....++..++..+|++.+|+++||+|||+.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~   78 (417)
T 2cfq_A            2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW   78 (417)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            3678999998888665544333333334444333 466653  4578889999999999999999999999987554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=94.05  E-value=0.045  Score=52.14  Aligned_cols=67  Identities=6%  Similarity=0.004  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHH------hCCCc--hhHHHHHHHhhhcccccccchhhhh-hhhhhhH
Q 021110          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVA------LGVND--TTELLCLFSLCNFAGRLGSGVLSEH-YVRSLLL  281 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a------l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~-l~r~~~~  281 (317)
                      +.+|.+++..++....-..+...+....+.      ++.+.  .....++..+++.+|.+.+|+++|| ++||+.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~   88 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV   88 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            357777776655444333343444444433      66653  4568899999999999999999999 8998753

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=93.92  E-value=0.045  Score=51.11  Aligned_cols=66  Identities=14%  Similarity=0.007  Sum_probs=42.2

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~  281 (317)
                      ..++.+++..++....-.++..-+..+.+++ .+  +.....++..++..++.+.+|+++||++||+.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l   95 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL   95 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH
Confidence            3444444444333222222223344555555 54  345788999999999999999999999998653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=92.40  E-value=0.23  Score=47.17  Aligned_cols=81  Identities=11%  Similarity=-0.082  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhhcchhheecchHHHHHH-hCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHHHHHHHHH
Q 021110          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRK  293 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r~~~~~~~~~~  293 (317)
                      +|.+++..++....-...........+. .+.+  ......++.++...++..+.|+++||++||+....+.+.+...++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~  364 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFA  364 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence            4444444333333333333444444544 2333  344566777888888899999999999998654433333333333


Q ss_pred             HHHH
Q 021110          294 CKCF  297 (317)
Q Consensus       294 ~~~~  297 (317)
                      +++.
T Consensus       365 ~~~~  368 (491)
T 4aps_A          365 GLSF  368 (491)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=92.34  E-value=0.12  Score=47.15  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=38.0

Q ss_pred             cchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          236 NNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       236 ~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      .-...+.+++|.++  .....++..+.+.++.+..|+++||++||+.+..
T Consensus        21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   70 (375)
T 2gfp_A           21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILV   70 (375)
T ss_dssp             HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHH
T ss_pred             hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            34555667777764  3468889999999999999999999999987544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=92.24  E-value=0.22  Score=46.24  Aligned_cols=46  Identities=15%  Similarity=0.190  Sum_probs=37.1

Q ss_pred             hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ...+.++++.++  ..+..++..++..++.+.+|.++||++||+.+..
T Consensus        49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~   96 (438)
T 3o7q_A           49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT   96 (438)
T ss_dssp             HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH
Confidence            445667778764  3568889999999999999999999999976444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=91.99  E-value=0.3  Score=45.79  Aligned_cols=73  Identities=12%  Similarity=0.054  Sum_probs=44.5

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhhee-cchHHHHHHh-CCC---c--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110          208 LGEAFVKADFWLLWFVYFLGVGAGVTVL-NNLAQIGVAL-GVN---D--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i-~n~~~i~~al-~~~---~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~  280 (317)
                      .++.++++++|.+++..++.. .+.... .......+.. +..   .  .....++..+++.+|++..|+++||++||+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  291 (417)
T 2cfq_A          213 ALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA  291 (417)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH
Confidence            457788999998776544332 222211 2223333332 211   1  1345667778899999999999999998875


Q ss_pred             H
Q 021110          281 L  281 (317)
Q Consensus       281 ~  281 (317)
                      +
T Consensus       292 l  292 (417)
T 2cfq_A          292 L  292 (417)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=90.27  E-value=0.14  Score=49.09  Aligned_cols=69  Identities=10%  Similarity=-0.026  Sum_probs=46.3

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHH-HHHHhC------CCc--hhHHHHHHHhhhcccccccchhhhhh-hhhhhHHH
Q 021110          215 ADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALG------VND--TTELLCLFSLCNFAGRLGSGVLSEHY-VRSLLLCS  283 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~------~~~--~~~~vsl~si~n~~GRl~~G~~SD~l-~r~~~~~r  283 (317)
                      +.+|.+++..++...+-.++...+.. +.+.++      .+.  .....++..++..+|.+.+|+++||+ +||+.+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~   90 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW   90 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            35676666555544443333344443 345567      553  45688899999999999999999999 99876433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=87.42  E-value=0.13  Score=47.05  Aligned_cols=71  Identities=15%  Similarity=0.141  Sum_probs=50.2

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhh
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVR  277 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r  277 (317)
                      +.++.++++.+|.+++..++.......+......+.++ +|.++  .....++.+++..+|++..|.++||.++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          191 SYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999888777655544444444444443 44432  3456777888899999999999998877

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=85.79  E-value=1  Score=42.49  Aligned_cols=32  Identities=16%  Similarity=-0.026  Sum_probs=27.4

Q ss_pred             HHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          252 ELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       252 ~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      +.++...++..+|-+++|+++||+|||+.+..
T Consensus        59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~   90 (491)
T 4gc0_A           59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKI   90 (491)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            46777888999999999999999999987544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.44
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.98
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	95.89

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.00015  Score=65.55  Aligned_cols=77  Identities=10%  Similarity=0.041  Sum_probs=55.3

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ..++.++++.+|.+.+..++.......+........+. .+.+.  .....++..+.+.+|+++.|+++||++|++....
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  320 (447)
T d1pw4a_         241 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT  320 (447)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc
Confidence            45677889999999888877666555544444444333 34442  3567888999999999999999999998765444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00046  Score=60.32  Aligned_cols=73  Identities=14%  Similarity=0.162  Sum_probs=52.7

Q ss_pred             hhhhhhhHHHHHHHHHHh-hcchhheecchHH-HHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          210 EAFVKADFWLLWFVYFLG-VGAGVTVLNNLAQ-IGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~-~g~Gl~~i~n~~~-i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      ..+|+++||.+.+.+++. .+.|.. ..-+.. +.+.+|.++.  .+..++..++..++.+.+|.++||++||+.+..
T Consensus         2 ~~lkn~~~~~l~~~~f~~~~~~~~~-~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~   78 (417)
T d1pv7a_           2 YYLKNTNFWMFGLFFFFYFFIMGAY-FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW   78 (417)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHH
T ss_pred             CcccCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            458999999998866543 333332 223333 3455677643  568889999999999999999999999986544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0057  Score=54.60  Aligned_cols=66  Identities=23%  Similarity=0.252  Sum_probs=43.5

Q ss_pred             HHHHHHHHHhhcchhheecchH---HHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110          218 WLLWFVYFLGVGAGVTVLNNLA---QIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       218 w~l~~~~~~~~g~Gl~~i~n~~---~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r  283 (317)
                      |.+++..+++.....+.-.+.+   ...+++|.+  +..+..++..++..+|.+.+|.++||++||+.+..
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   94 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA   94 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            5555544444333332222333   333445665  34678899999999999999999999999986544