Citrus Sinensis ID: 021119

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MPRTANLYRMVLFYLQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPLLPI
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHcccccccEEEcccccccHcccccccccccccccc
Coil and Loop (DISEMBL)
MPRTANLYRMVLFYLQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVnqlrslpegtsalglpvatgaYLYTLIFVTVPSLASVFNeyalksqydtsiyhqnlfLYGYGAIFNFLGIVITAmfkgpssfdilqgHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMhqffsplskvkdepknislesvdspknkrskdtsfigmaaganedashravneekapllpi
Flexible Loop (DISEMBL)
MPRTANLYRMVLFYLQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNIslesvdspknkrskdTSFIGMAAganedashravneekapllpi
Low Complexity Region (SEG)
MPRTANLYRMVLFYLQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPLLPI
Disordered region (IsUnstruct)
*****NLYRMVLFYLQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP*******************************************************
Disordered Region (DISOPRED)
**RTANLYRMVLFYLQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF**********************************************************
Disordered Region (DISEMBL)
MPRTANLYRMVLFYLQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNISLES*********KDTSFIGMAAGA*******************
Disordered Region (DISPRO)
***TANLYRMVLFYLQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP******GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL******************************************************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRTANLYRMVLFYLQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPLLPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
Q8GY97	406	CMP-sialic acid transport	yes	no	0.946	0.738	0.788	1e-135
Q9C5H6	405	CMP-sialic acid transport	no	no	0.949	0.743	0.771	1e-134
Q8LGE9	340	CMP-sialic acid transport	no	no	0.747	0.697	0.318	2e-32
F4JN00	352	CMP-sialic acid transport	no	no	0.684	0.616	0.342	5e-25
A0JMG9	314	Probable UDP-sugar transp	yes	no	0.697	0.703	0.289	1e-19
A4IHW3	321	Probable UDP-sugar transp	yes	no	0.694	0.685	0.279	6e-17
Q9R0M8	390	UDP-galactose translocato	yes	no	0.807	0.656	0.266	1e-15
Q6DCG9	413	Probable UDP-sugar transp	N/A	no	0.848	0.651	0.257	2e-15
Q90X48	440	Probable UDP-sugar transp	no	no	0.731	0.527	0.263	2e-14
Q93890	368	UDP-galactose/UDP-N-acety	yes	no	0.757	0.652	0.255	2e-14

>sp|Q8GY97|CSTR2_ARATH CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240 PE=2 SV=1

 Score =  481 bits (1237), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/302 (78%), Positives = 268/302 (88%), Gaps = 2/302 (0%)

Query: 16  QMPVISF-ILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALL 74
           + P++S    +QAARNN+LLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKV VIA+L
Sbjct: 105 EKPLLSLSTFVQAARNNMLLAVPAGLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVL 164

Query: 75  LKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSL 134
           LK+IMKRRFSIIQWEALALLLIGIS+NQLRSLPEG + + +P+ATGAY+ T IFVTVPSL
Sbjct: 165 LKMIMKRRFSIIQWEALALLLIGISINQLRSLPEGATTVAVPIATGAYICTFIFVTVPSL 224

Query: 135 ASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATML 194
           ASV+NEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T ++KGP SFDILQGHS+ATM 
Sbjct: 225 ASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMF 284

Query: 195 LICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFI 254
           LI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAALFGH LTMNF+LGISIVFI
Sbjct: 285 LILNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHILTMNFLLGISIVFI 344

Query: 255 SMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPL 314
           SMHQFFSPLSK KDE +N ++E VD+    R+KD SFI MAAGA E+ASHR  ++++ PL
Sbjct: 345 SMHQFFSPLSKAKDEQQNGNIELVDAKDGHRAKD-SFINMAAGATEEASHRIESDDRVPL 403

Query: 315 LP 316
           LP
Sbjct: 404 LP 405

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5H6|CSTR3_ARATH CMP-sialic acid transporter 3 OS=Arabidopsis thaliana GN=UTR6 PE=2 SV=1

 Score =  476 bits (1225), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/302 (77%), Positives = 266/302 (88%), Gaps = 1/302 (0%)

Query: 16  QMPVISF-ILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALL 74
           + P++S    +QAARNNVLLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKV VIA+L
Sbjct: 103 EKPLLSVSTFVQAARNNVLLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVL 162

Query: 75  LKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSL 134
           LK++MKRRFSIIQWEALALLLIGISVNQLRSLPEG +A+G+P+ATGAY+ T+IFVTVPS+
Sbjct: 163 LKMVMKRRFSIIQWEALALLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSM 222

Query: 135 ASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATML 194
           ASVFNEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T ++KGP SFDILQGHS+ATM 
Sbjct: 223 ASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMF 282

Query: 195 LICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFI 254
           LI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAALFGH +TMNF+LGISIVFI
Sbjct: 283 LILNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFI 342

Query: 255 SMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPL 314
           SMHQFFSPL+K +DE +      + + K+    + SFI MAAGANE+ASHR  ++++ PL
Sbjct: 343 SMHQFFSPLAKARDEQQQNGNLELGNTKDTHRANESFINMAAGANEEASHRGESDDRTPL 402

Query: 315 LP 316
           LP
Sbjct: 403 LP 404

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGE9|CSTR1_ARATH CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 134/242 (55%), Gaps = 5/242 (2%)

Query: 33  LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALA 92
           L  +P+ +Y I+N ++F    Y + +T +++ NLK+    +L ++ +KR+ S +QW A+ 
Sbjct: 79  LFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFLKRKLSKLQWMAIG 138

Query: 93  LLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIY 152
           LL +G + +Q++   E +           YL  ++   + +LA ++ E+ +K   DT +Y
Sbjct: 139 LLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALAGIYTEFLMKRNNDT-LY 197

Query: 153 HQNLFLYGYGAIFNFLGIVIT----AMFKGPSSFDILQGHSKATMLLICNNAAQGILSSF 208
            QNL LY +G++FN   ++         KGP    I  G+S  T L++ N  + G+L S+
Sbjct: 198 WQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSITTWLVVLNLGSTGLLVSW 257

Query: 209 FFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKD 268
             KYAD I+K YS+++A + T +AS  LF    T+   LGI I  +S+H +F+P   + D
Sbjct: 258 LMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLGIVICIMSLHMYFAPPHTLVD 317

Query: 269 EP 270
            P
Sbjct: 318 LP 319

Essential protein. Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JN00|CSTR4_ARATH CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1

 Score =  115 bits (288), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 36  VPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLL 95
           +PA LY   N L++ +  Y +    ++L NL +    +L +II+KR+ S IQW    LL 
Sbjct: 128 IPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSEIQWAGFILLC 187

Query: 96  IGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQN 155
            G +  QL S  +      LP  T A +  L+       A V+ E  +K +   +I  QN
Sbjct: 188 CGCTTAQLNSNSDRVLQTSLPGWTMAIVMALL----SGFAGVYTEAIIKKRPSRNINVQN 243

Query: 156 LFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADT 215
            +LY +G  FN + IVI   F   ++     G+S  T+L+I N+A  GI  S   KYAD 
Sbjct: 244 FWLYVFGMAFNAVAIVIQD-FDAVANKGFFHGYSFITLLMILNHALSGIAVSMVMKYADN 302

Query: 216 ILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMH 257
           I+K YS++VA + T + S  LF   L++ F LG ++V +S++
Sbjct: 303 IVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVY 344

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi (By similarity). Essential protein.

Arabidopsis thaliana (taxid: 3702)

>sp|A0JMG9|S35A4_DANRE Probable UDP-sugar transporter protein SLC35A4 OS=Danio rerio GN=slc35a4 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 35  AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALL 94
           AVPA LYA NN+L   MQ Y +P++ ++LSNLK+   ALL    + +R    QW A+ LL
Sbjct: 93  AVPAVLYAFNNHLVVFMQAYMDPSSFQVLSNLKIASTALLYTSCLGKRLHRRQWFAMGLL 152

Query: 95  L-IGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYH 153
           +  G+S +      EG     + + +   L  L++  V  LA+V+ E  LKSQ    +  
Sbjct: 153 VSAGVSHSCFSYDLEGKRETAVYITSWGLLLVLVYCFVSGLAAVYTERVLKSQ-RLPLSM 211

Query: 154 QNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYA 213
           QNLFLY +G + N     + +   G       +G+S    +++    A G+L S   K+ 
Sbjct: 212 QNLFLYTFGVVVN-----LASHLSGGEQKGFFEGYSAVVWVIVAGQVANGLLMSVVMKHG 266

Query: 214 DTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261
             I + +  + A +   + S  + G  LT  F+  + ++  +++ +++
Sbjct: 267 TGITRLFVISSAMLVNAVLSWGILGVQLTGYFLFPVVLIGWAVYLYYT 314

Danio rerio (taxid: 7955)

>sp|A4IHW3|S35A4_XENTR Probable UDP-sugar transporter protein SLC35A4 OS=Xenopus tropicalis GN=slc35a4 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 118/229 (51%), Gaps = 9/229 (3%)

Query: 35  AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALL 94
           AVPA LY  NN L   +Q + +P++ ++LSNLK+   A+L  + +++R S+ +W ++ LL
Sbjct: 96  AVPAVLYGANNNLVVYIQHFMDPSSFQVLSNLKIVSTAVLYSLFLRQRLSVRRWLSVFLL 155

Query: 95  L---IGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSI 151
           L   +  S   ++ L + +S   L V     L  L +  +  L++V+ E  LK+Q    +
Sbjct: 156 LAAGVFYSYGGIQDLEKVSSDTNLYVTLPGLLLMLAYCLISGLSAVYTEMTLKTQ-KIPL 214

Query: 152 YHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFK 211
             QNL+LY +G I N     +TA      + D   G S    ++I + A  G++ S   K
Sbjct: 215 NMQNLYLYSFGIIIN-----LTAHLTSSKNSDFFDGFSVWVWVIILSQALNGLIMSLVMK 269

Query: 212 YADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 260
            ++ I + +  + + +  G  S  LF   LT  F L + ++ ++++ ++
Sbjct: 270 LSNNITRLFIISFSMLANGFLSFILFQLQLTALFFLAVVLIGLAVYMYY 318

Xenopus tropicalis (taxid: 8364)

>sp|Q9R0M8|S35A2_MOUSE UDP-galactose translocator OS=Mus musculus GN=Slc35a2 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 131/266 (49%), Gaps = 10/266 (3%)

Query: 3   RTANLYRMVLFYLQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKM 62
           +  N+  +VLF  +  ++ ++      + + LAVP+ +Y + N L+++       AT ++
Sbjct: 90  KRGNVKHLVLFLHEAVLVQYV------DTLKLAVPSLIYTLQNNLQYVAISNLPAATFQV 143

Query: 63  LSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAY 122
              LK+   AL   +++ R  S +QW +L LL  G+++ Q +    G+    L    GA 
Sbjct: 144 TYQLKILTTALFSVLMLNRSLSRLQWASLLLLFTGVAIVQAQQ-AGGSGPRPLDQNPGAG 202

Query: 123 LYTLIFVTVPS-LASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 181
           L  ++   + S  A V+ E  LK     S++ +NL L  +G     +G+   A     +S
Sbjct: 203 LAAVVASCLSSGFAGVYFEKILKGS-SGSVWLRNLQLGLFGTALGLVGL-WWAEGTAVAS 260

Query: 182 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTL 241
                G++ A   ++ N A  G+L +   KYAD ILK ++++++ + + +AS  LFG  L
Sbjct: 261 QGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHL 320

Query: 242 TMNFILGISIVFISMHQFFSPLSKVK 267
              F LG  +V  +++ +  P   VK
Sbjct: 321 DPLFALGAGLVIGAVYLYSLPRGAVK 346

Transports nucleotide sugars from the cytosol into Golgi vesicles where glycosyltransferases function.

Mus musculus (taxid: 10090)

>sp|Q6DCG9|S35A5_XENLA Probable UDP-sugar transporter protein SLC35A5 OS=Xenopus laevis GN=slc35a5 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 138/311 (44%), Gaps = 42/311 (13%)

Query: 35  AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALL 94
           AVPAFLY ++N + F +  Y  PA   +LSN  +   A+  ++I+KR+ S +QW +L +L
Sbjct: 97  AVPAFLYFLDNLIIFYVLAYLQPAMAVLLSNFVIITTAVFFRLILKRQLSCVQWASLVIL 156

Query: 95  LIGI----SVNQ--------------LRSLPEGTSA-LGLP-----------VATGAYLY 124
            + I    S N                 S P  +   L  P           +A   +L+
Sbjct: 157 FLSIMGLTSRNDTAHHEVSVDVHHHLFHSAPSNSCTYLNKPDTEAHTVSLKAIANFQFLH 216

Query: 125 -------TLIFVTVPSLASVFNEYALKS--QYDTSIYHQNLFLYGYGAIFNFLGIVI-TA 174
                   L+   + +LA+++NE  LK   Q   SI+ QN  LY +G  FN L +V+   
Sbjct: 217 LGLGHFLILLQCVISALANIYNEKILKEGEQMSESIFIQNSKLYVFGVFFNGLTLVLHDE 276

Query: 175 MFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASA 234
            F    S     GH+  ++ LI   A  G+  +F  K+ D +    ++ + T+   + S 
Sbjct: 277 YFSKIKSCGFFYGHNGFSVALIFTTAFVGLSVAFILKFRDNMFHVLTAQITTVIITIVSY 336

Query: 235 ALFGHTLTMNFILGISIVFISMHQF-FSPLSKVKDEPKNISLESVDSPKNKRSK-DTSFI 292
            +F    +++F L   +V +S+  +  S +++     K   L+ ++    +RS  D   +
Sbjct: 337 FVFSFKPSLDFFLEAPVVLLSIFIYNASRITESSGTTKREKLKIINGDVWERSNGDGQEL 396

Query: 293 GMAAGANEDAS 303
                ANED+ 
Sbjct: 397 EKLTAANEDSE 407

Xenopus laevis (taxid: 8355)

>sp|Q90X48|S35A5_DANRE Probable UDP-sugar transporter protein SLC35A5 OS=Danio rerio GN=slc35a5 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 127/281 (45%), Gaps = 49/281 (17%)

Query: 35  AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALL 94
           +VPAFLY ++N + F +  Y  PA   + SN+ +F  A L ++++KRR S +QW +L +L
Sbjct: 117 SVPAFLYFLDNLIIFYVIAYLQPAMAVLFSNIVIFTTAFLFRVVLKRRLSWVQWASLIIL 176

Query: 95  LIGI-------------SVNQL-------------------------------RSLPEGT 110
            + I             +V+ L                               R L +  
Sbjct: 177 FLSIVSLTTGNGDQHAMAVHGLHPAHISTPSNSCLKYTHLHQVHQSHNESYWSRELWDSQ 236

Query: 111 SALGLPVATGAYLYTLIFVTVPSLASVFNEYALK--SQYDTSIYHQNLFLYGYGAIFNFL 168
               L      Y+  L+   + +LA+++NE  LK   Q   SI+ QN  LY +G +FN L
Sbjct: 237 LIHKLNSFGLGYVLLLLQCFISALANIYNEKILKEGEQLVESIFIQNSKLYLFGLVFNSL 296

Query: 169 GIVITAMFKGPS-SFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATI 227
            +++ A ++  +    IL GH+  ++ L    AA G+  +F  K+ D +    +  + T+
Sbjct: 297 TLLLHADYRNLTLHCGILYGHNVFSVALGFVTAALGLSVAFILKFRDNMFHVLTGQITTV 356

Query: 228 FTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKD 268
                S  LF    +M+F +   +V +S+  + S  SK+KD
Sbjct: 357 VVTALSFFLFDFQPSMDFFMQAPVVLLSIFIYHS--SKMKD 395

Danio rerio (taxid: 7955)

>sp|Q93890|SRF3_CAEEL UDP-galactose/UDP-N-acetylglucosamine transporter srf-3 OS=Caenorhabditis elegans GN=srf-3 PE=1 SV=5

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 3/243 (1%)

Query: 24  LLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRF 83
           +L+   + + + +PA +Y + N L ++   + + AT  + S LK+F  A+   II++R  
Sbjct: 110 ILEQPYDTLKVCIPAMIYIVQNNLFYVAASHLDAATFMITSQLKIFTAAIFTVIILRRSL 169

Query: 84  SIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYAL 143
           +  QW ALA+L +G+S+ QL+      S+   P      +       +   A ++ E  L
Sbjct: 170 NRTQWFALAVLFVGVSLVQLQGTKAKESSGESPFVGFVAVVVA--CCLSGFAGIYFEKIL 227

Query: 144 KSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQG 203
           K     S++ +N+ +  +    +F  I +    K  + + +L G      L +      G
Sbjct: 228 KGSAPVSLWMRNVQMAVFSIPASFSAIYMQDS-KTVNEYGLLYGFDSIVWLTVLWYGVGG 286

Query: 204 ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 263
           +  +   KYAD I K ++++VA I + + S  LF    +  F+LG S+V  S+  + S  
Sbjct: 287 LSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSFTFLLGASLVIFSIFLYSSHQ 346

Query: 264 SKV 266
           S V
Sbjct: 347 SMV 349

Acts as a transporter of both UDP-galactose and UDP-N-acetylglucosamine into the Golgi lumen.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
298205053	344	unnamed protein product [Vitis vinifera]	0.924	0.851	0.887	1e-146
224109188	403	predicted protein [Populus trichocarpa]	0.924	0.727	0.866	1e-146
255547474	400	UDP-galactose/UDP-N-acetylglucosamine tr	0.924	0.732	0.873	1e-146
359495772	388	PREDICTED: probable UDP-sugar transporte	0.924	0.755	0.887	1e-145
224101251	408	predicted protein [Populus trichocarpa]	0.924	0.718	0.856	1e-144
359478080	405	PREDICTED: probable UDP-sugar transporte	0.949	0.743	0.841	1e-142
356536564	403	PREDICTED: probable UDP-sugar transporte	0.943	0.741	0.834	1e-138
363808016	403	uncharacterized protein LOC100815055 [Gl	0.943	0.741	0.831	1e-138
357445115	432	UDP-galactose transporter [Medicago trun	0.914	0.671	0.781	1e-135
297820766	405	UDP-galactose transporter 6 [Arabidopsis	0.946	0.740	0.788	1e-134

>gi|298205053|emb|CBI38349.3| unnamed protein product [Vitis vinifera]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/293 (88%), Positives = 276/293 (94%)

Query: 25  LQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFS 84
           ++AARNN LLAVPA LYAINNYLKFIMQLYFNPATVKMLSNLKV VIA+LLKIIM+R FS
Sbjct: 52  VEAARNNALLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRHFS 111

Query: 85  IIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALK 144
           IIQWEALALLLIGISVNQLRSLPEGT+ALGLPVATGAYLYTLIFVTVPSLASVFNEYALK
Sbjct: 112 IIQWEALALLLIGISVNQLRSLPEGTAALGLPVATGAYLYTLIFVTVPSLASVFNEYALK 171

Query: 145 SQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGI 204
           SQ++TSIY QNLFLYGYGAIFNFLGI+ TA+ KGPSSF+ILQGHS+ATMLLI NNAAQGI
Sbjct: 172 SQFETSIYLQNLFLYGYGAIFNFLGIIGTAILKGPSSFNILQGHSRATMLLIFNNAAQGI 231

Query: 205 LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS 264
           LSSFFFKYADTILKKYSSTVATIFTG+ASAALFGHTLT+NFILGISIVFISMHQFFSPLS
Sbjct: 232 LSSFFFKYADTILKKYSSTVATIFTGIASAALFGHTLTINFILGISIVFISMHQFFSPLS 291

Query: 265 KVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPLLPI 317
           KVKDEPKN SLE +DS  N+RSKD SFI MAAGANEDASHR   +EKAPLLPI
Sbjct: 292 KVKDEPKNGSLEMIDSQNNQRSKDASFINMAAGANEDASHRVEPDEKAPLLPI 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109188|ref|XP_002315116.1| predicted protein [Populus trichocarpa] gi|222864156|gb|EEF01287.1| predicted protein [Populus trichocarpa]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/293 (86%), Positives = 276/293 (94%)

Query: 25  LQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFS 84
           +QAARNNVLLAVPAFLYAINNYLKF MQLYFNPATVKMLSNLKV VIA+LLK+IMKRRFS
Sbjct: 111 VQAARNNVLLAVPAFLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKVIMKRRFS 170

Query: 85  IIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALK 144
           IIQWEALALLLIGIS+NQL+SLP G++A+GL VATGAYLYTLIFVTVPS ASV+NEYALK
Sbjct: 171 IIQWEALALLLIGISLNQLQSLPAGSTAMGLSVATGAYLYTLIFVTVPSFASVYNEYALK 230

Query: 145 SQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGI 204
           SQ++TSIY QNLFLYGYGAIFNFL I++TA+FKGPSS DIL GHSKATMLLICNNAAQGI
Sbjct: 231 SQFETSIYLQNLFLYGYGAIFNFLAILVTALFKGPSSLDILHGHSKATMLLICNNAAQGI 290

Query: 205 LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS 264
           LSSFFFKYADTILKKYSSTVATIFTG+ASA LFGHTLTMNFILGISIVFISMHQFFSPLS
Sbjct: 291 LSSFFFKYADTILKKYSSTVATIFTGIASAVLFGHTLTMNFILGISIVFISMHQFFSPLS 350

Query: 265 KVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPLLPI 317
           KVKDEP+N SLE+VD   N+RSKD+SFI MAAGAN+DASHR  ++EKAPLLPI
Sbjct: 351 KVKDEPQNGSLETVDGQNNQRSKDSSFINMAAGANDDASHRVEHDEKAPLLPI 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547474|ref|XP_002514794.1| UDP-galactose/UDP-N-acetylglucosamine transporter, putative [Ricinus communis] gi|223545845|gb|EEF47348.1| UDP-galactose/UDP-N-acetylglucosamine transporter, putative [Ricinus communis]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/293 (87%), Positives = 274/293 (93%)

Query: 25  LQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFS 84
           +QAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKV VIA+LLKIIMKRRFS
Sbjct: 108 VQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMKRRFS 167

Query: 85  IIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALK 144
           IIQWEALALLLIGISVNQLRSLP GT+A+GLPVATGAYLYTLIF TVPSLASV+NEYALK
Sbjct: 168 IIQWEALALLLIGISVNQLRSLPGGTTAMGLPVATGAYLYTLIFATVPSLASVYNEYALK 227

Query: 145 SQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGI 204
           SQ+DTSIY QNLFLYGYGAIFNFL I++TA+FKGPSS DILQGHSKATMLLICNNAAQGI
Sbjct: 228 SQFDTSIYLQNLFLYGYGAIFNFLAILVTAIFKGPSSLDILQGHSKATMLLICNNAAQGI 287

Query: 205 LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS 264
           LSSFFFKYADTILKKYSSTVATIFTG+ASAALFGHTLTMNFILGISIVFISMHQFFSPLS
Sbjct: 288 LSSFFFKYADTILKKYSSTVATIFTGIASAALFGHTLTMNFILGISIVFISMHQFFSPLS 347

Query: 265 KVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPLLPI 317
           KVKDEP N  ++ +D   N+RSKD +FI M AGANEDA+H   ++EKAPLLPI
Sbjct: 348 KVKDEPPNGGVQMMDGKNNQRSKDAAFINMTAGANEDANHLVEHDEKAPLLPI 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495772|ref|XP_002268240.2| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Vitis vinifera]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 260/293 (88%), Positives = 276/293 (94%)

Query: 25  LQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFS 84
           ++AARNN LLAVPA LYAINNYLKFIMQLYFNPATVKMLSNLKV VIA+LLKIIM+R FS
Sbjct: 96  VEAARNNALLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRHFS 155

Query: 85  IIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALK 144
           IIQWEALALLLIGISVNQLRSLPEGT+ALGLPVATGAYLYTLIFVTVPSLASVFNEYALK
Sbjct: 156 IIQWEALALLLIGISVNQLRSLPEGTAALGLPVATGAYLYTLIFVTVPSLASVFNEYALK 215

Query: 145 SQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGI 204
           SQ++TSIY QNLFLYGYGAIFNFLGI+ TA+ KGPSSF+ILQGHS+ATMLLI NNAAQGI
Sbjct: 216 SQFETSIYLQNLFLYGYGAIFNFLGIIGTAILKGPSSFNILQGHSRATMLLIFNNAAQGI 275

Query: 205 LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS 264
           LSSFFFKYADTILKKYSSTVATIFTG+ASAALFGHTLT+NFILGISIVFISMHQFFSPLS
Sbjct: 276 LSSFFFKYADTILKKYSSTVATIFTGIASAALFGHTLTINFILGISIVFISMHQFFSPLS 335

Query: 265 KVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPLLPI 317
           KVKDEPKN SLE +DS  N+RSKD SFI MAAGANEDASHR   +EKAPLLPI
Sbjct: 336 KVKDEPKNGSLEMIDSQNNQRSKDASFINMAAGANEDASHRVEPDEKAPLLPI 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101251|ref|XP_002312202.1| predicted protein [Populus trichocarpa] gi|222852022|gb|EEE89569.1| predicted protein [Populus trichocarpa]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/293 (85%), Positives = 275/293 (93%)

Query: 25  LQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFS 84
           +QAARNNVLLAVPAFLYAI+NYLKFIMQLYFNPATVKML NLKV VIA+LLK+IMKRRFS
Sbjct: 116 VQAARNNVLLAVPAFLYAISNYLKFIMQLYFNPATVKMLGNLKVLVIAVLLKMIMKRRFS 175

Query: 85  IIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALK 144
           IIQWEALALLLIGISVNQLR+LPEG+SA+GLPVATGAYLYTLIFV+VPS ASV+NEYALK
Sbjct: 176 IIQWEALALLLIGISVNQLRTLPEGSSAMGLPVATGAYLYTLIFVSVPSFASVYNEYALK 235

Query: 145 SQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGI 204
           SQ++TSIY QNLFLYGYGAIFNFL I++TA+FKGPSS DIL GHS+ATMLLICNNAAQGI
Sbjct: 236 SQFETSIYLQNLFLYGYGAIFNFLAILVTAIFKGPSSLDILHGHSRATMLLICNNAAQGI 295

Query: 205 LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS 264
           LSSFFFKYADTILKKYSSTVATIFTG+ASA LFGH LTMNFILGISIVFISMHQFFSPLS
Sbjct: 296 LSSFFFKYADTILKKYSSTVATIFTGIASAVLFGHALTMNFILGISIVFISMHQFFSPLS 355

Query: 265 KVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPLLPI 317
           KVKDEP++ SLE VDS  ++RSKD+SFI M AGAN+DASH   ++EKAPLLPI
Sbjct: 356 KVKDEPRDDSLEMVDSQNSQRSKDSSFINMTAGANDDASHHVGHDEKAPLLPI 408

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478080|ref|XP_003632066.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Vitis vinifera] gi|297745192|emb|CBI39184.3| unnamed protein product [Vitis vinifera]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 254/302 (84%), Positives = 276/302 (91%), Gaps = 1/302 (0%)

Query: 16  QMPVISF-ILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALL 74
           + P++S    +QAARNNVLLAVPA LYAINNYLKFIMQLYFNPATVKMLSNLKV VIA+L
Sbjct: 103 EKPLLSVSTFVQAARNNVLLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVL 162

Query: 75  LKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSL 134
           LK+IM+RRFS IQWEALALLLIGISVNQ+RSLPEGT+ALGLPVATGAYLYTLIFVTVPSL
Sbjct: 163 LKMIMRRRFSTIQWEALALLLIGISVNQMRSLPEGTTALGLPVATGAYLYTLIFVTVPSL 222

Query: 135 ASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATML 194
           ASV+NEYALKSQYDTSIY QNLFLYGYGAIFNFLGIV TA+ KGPSSFDIL GHSKATML
Sbjct: 223 ASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGIVGTAVVKGPSSFDILHGHSKATML 282

Query: 195 LICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFI 254
           LI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAA+FGHTLT+NFILGISIVFI
Sbjct: 283 LIFNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAAMFGHTLTINFILGISIVFI 342

Query: 255 SMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPL 314
           SMHQFFSPLSKVKDE +N  LE +D   + R KD+SFI MAAGANE+ASHR  ++E+ PL
Sbjct: 343 SMHQFFSPLSKVKDEEQNGKLEVMDIQGDHRLKDSSFINMAAGANEEASHRVGSDERQPL 402

Query: 315 LP 316
           LP
Sbjct: 403 LP 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536564|ref|XP_003536807.1| PREDICTED: probable UDP-sugar transporter protein SLC35A4-like [Glycine max]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/302 (83%), Positives = 272/302 (90%), Gaps = 3/302 (0%)

Query: 16  QMPVISF-ILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALL 74
           + P++S    +QAARNNVLLAVPA LYAINNYLKFIMQLYFNPATVKMLSNLKV VIALL
Sbjct: 103 EKPLLSISTFMQAARNNVLLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIALL 162

Query: 75  LKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSL 134
           LK+IMKRRFSIIQWEALALLLIGISVNQLRSLPEGT+ALGLPV  GAY YTLIFVTVPSL
Sbjct: 163 LKVIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTTALGLPVTMGAYAYTLIFVTVPSL 222

Query: 135 ASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATML 194
           ASV+NEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T + KGPSSFDILQGHSKATML
Sbjct: 223 ASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVVVKGPSSFDILQGHSKATML 282

Query: 195 LICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFI 254
           LI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASA LFGHTLTMNF++GISIVFI
Sbjct: 283 LIANNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAVLFGHTLTMNFVIGISIVFI 342

Query: 255 SMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPL 314
           SMHQFFSPLSKVKDE +N  LE  D    +RSK+ SFI MAAGANE+A+HR  ++E+ PL
Sbjct: 343 SMHQFFSPLSKVKDE-QNGVLELHDVHDKQRSKE-SFINMAAGANEEATHRVGHDERQPL 400

Query: 315 LP 316
           LP
Sbjct: 401 LP 402

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808016|ref|NP_001242719.1| uncharacterized protein LOC100815055 [Glycine max] gi|255636089|gb|ACU18389.1| unknown [Glycine max]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 251/302 (83%), Positives = 273/302 (90%), Gaps = 3/302 (0%)

Query: 16  QMPVISF-ILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALL 74
           + P++S    +QAARNNVLLAVPA LYAINNYLKFIMQLYFNPATVKMLSNLKV VIALL
Sbjct: 103 EKPLLSISTFVQAARNNVLLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIALL 162

Query: 75  LKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSL 134
           LK+IMKRRFSIIQWEALALLLIGISVNQLRSLPEGT+ALGLPV  GAY+YTLIFVTVPSL
Sbjct: 163 LKVIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTTALGLPVTMGAYIYTLIFVTVPSL 222

Query: 135 ASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATML 194
           ASV+NEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T + KGPSSFDILQGHSKATML
Sbjct: 223 ASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVVVKGPSSFDILQGHSKATML 282

Query: 195 LICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFI 254
           LI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASA LFGHTLT+NF++GISIVFI
Sbjct: 283 LIANNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAVLFGHTLTLNFVIGISIVFI 342

Query: 255 SMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPL 314
           SMHQFFSPLSKVKDE +N  LE  D    +RSK+ SFI MAAGANE+A+HR  ++E+ PL
Sbjct: 343 SMHQFFSPLSKVKDE-QNGVLELHDVHDKQRSKE-SFINMAAGANEEATHRVGHDERQPL 400

Query: 315 LP 316
           LP
Sbjct: 401 LP 402

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445115|ref|XP_003592835.1| UDP-galactose transporter [Medicago truncatula] gi|355481883|gb|AES63086.1| UDP-galactose transporter [Medicago truncatula]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 247/316 (78%), Positives = 272/316 (86%), Gaps = 26/316 (8%)

Query: 25  LQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFS 84
           +QAARNNVLLAVPAFLYAINNYLKF+MQLYFNPATVKMLSNLKV VIALLLK++MKRRFS
Sbjct: 118 MQAARNNVLLAVPAFLYAINNYLKFVMQLYFNPATVKMLSNLKVLVIALLLKVVMKRRFS 177

Query: 85  IIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALK 144
           IIQWEALALLLIGISVNQLRSLPEGT+ALGLPV  GAY+YT IFVTVPS+ASV+NEYALK
Sbjct: 178 IIQWEALALLLIGISVNQLRSLPEGTTALGLPVTMGAYVYTFIFVTVPSMASVYNEYALK 237

Query: 145 SQYDTSI------------------------YHQNLFLYGYGAIFNFLGIVITAMFKGPS 180
           SQYDTSI                        Y QNLFLYGYGA+FNFLGIV+TA+FKGPS
Sbjct: 238 SQYDTSIYLQVKYDTFNCFNIYIIDANSLFFYLQNLFLYGYGAMFNFLGIVVTAIFKGPS 297

Query: 181 SFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHT 240
           SFDIL+GHSKATMLLI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASA LFGH 
Sbjct: 298 SFDILEGHSKATMLLIANNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAVLFGHK 357

Query: 241 LTMNFILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANE 300
           LTMNF++GISIVFISMHQFFSPLSKV+DE +N +LE  D  + +RSKD SF+ MAAGANE
Sbjct: 358 LTMNFLIGISIVFISMHQFFSPLSKVRDE-QNGALELHDVQEKQRSKD-SFLNMAAGANE 415

Query: 301 DASHRAVNEEKAPLLP 316
           +ASHR  ++E+ PLLP
Sbjct: 416 EASHRVGHDERQPLLP 431

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820766|ref|XP_002878266.1| UDP-galactose transporter 6 [Arabidopsis lyrata subsp. lyrata] gi|297324104|gb|EFH54525.1| UDP-galactose transporter 6 [Arabidopsis lyrata subsp. lyrata]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/303 (78%), Positives = 272/303 (89%), Gaps = 3/303 (0%)

Query: 16  QMPVISF-ILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALL 74
           + P++S    +QAARNNVLLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKV VIA+L
Sbjct: 103 EKPLLSVSTFVQAARNNVLLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVL 162

Query: 75  LKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSL 134
           LK++MKRRFSIIQWEALALLLIGISVNQLRSLPEG +A+G+P+ATGAY+ T+IFVTVPS+
Sbjct: 163 LKMVMKRRFSIIQWEALALLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSM 222

Query: 135 ASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATML 194
           ASVFNEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T ++KGP SFDILQGHS+ATM 
Sbjct: 223 ASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMF 282

Query: 195 LICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFI 254
           LI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAALFGH +TMNF+LGISIVFI
Sbjct: 283 LILNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFI 342

Query: 255 SMHQFFSPLSKVKDE-PKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAP 313
           SMHQFFSPL+KV+DE  +N +LE V++    R+ D SFI MAAGANE+ASHR  ++++ P
Sbjct: 343 SMHQFFSPLAKVRDEQQQNGNLELVNAKDTHRAND-SFINMAAGANEEASHRGESDDRTP 401

Query: 314 LLP 316
           LLP
Sbjct: 402 LLP 404

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2040976	406	AT2G43240 [Arabidopsis thalian	0.946	0.738	0.788	2.2e-121
TAIR|locus:2081292	405	UTR6 "UDP-galactose transporte	0.946	0.740	0.778	3.2e-120
TAIR|locus:2152955	340	AT5G41760 [Arabidopsis thalian	0.741	0.691	0.327	1.2e-33
TAIR|locus:504955503	352	AT4G35335 [Arabidopsis thalian	0.684	0.616	0.342	5e-28
UNIPROTKB|F1NDA7	299	SLC35A4 "Uncharacterized prote	0.690	0.732	0.306	4.6e-25
ZFIN|ZDB-GENE-061103-595	314	slc35a4 "solute carrier family	0.697	0.703	0.289	1.3e-22
UNIPROTKB|Q8MIA3	324	SLC35A4 "Probable UDP-sugar tr	0.694	0.679	0.319	1.3e-20
UNIPROTKB|G5EFD3	328	srf-3 "Protein SRF-3, isoform	0.757	0.731	0.255	1.3e-20
WB|WBGene00005153	368	srf-3 [Caenorhabditis elegans	0.757	0.652	0.255	1.5e-20
UNIPROTKB|Q93890	368	srf-3 "UDP-galactose/UDP-N-ace	0.757	0.652	0.255	1.5e-20

TAIR|locus:2040976 AT2G43240 [Arabidopsis thaliana (taxid:3702)]

 Score = 1194 (425.4 bits), Expect = 2.2e-121, P = 2.2e-121
 Identities = 238/302 (78%), Positives = 268/302 (88%)

Query:    16 QMPVISF-ILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALL 74
             + P++S    +QAARNN+LLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKV VIA+L
Sbjct:   105 EKPLLSLSTFVQAARNNMLLAVPAGLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVL 164

Query:    75 LKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSL 134
             LK+IMKRRFSIIQWEALALLLIGIS+NQLRSLPEG + + +P+ATGAY+ T IFVTVPSL
Sbjct:   165 LKMIMKRRFSIIQWEALALLLIGISINQLRSLPEGATTVAVPIATGAYICTFIFVTVPSL 224

Query:   135 ASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATML 194
             ASV+NEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T ++KGP SFDILQGHS+ATM 
Sbjct:   225 ASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMF 284

Query:   195 LICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFI 254
             LI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAALFGH LTMNF+LGISIVFI
Sbjct:   285 LILNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHILTMNFLLGISIVFI 344

Query:   255 SMHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAPL 314
             SMHQFFSPLSK KDE +N ++E VD+    R+KD SFI MAAGA E+ASHR  ++++ PL
Sbjct:   345 SMHQFFSPLSKAKDEQQNGNIELVDAKDGHRAKD-SFINMAAGATEEASHRIESDDRVPL 403

Query:   315 LP 316
             LP
Sbjct:   404 LP 405

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS

TAIR|locus:2081292 UTR6 "UDP-galactose transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
 Identities = 236/303 (77%), Positives = 270/303 (89%)

Query:    16 QMPVISF-ILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALL 74
             + P++S    +QAARNNVLLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKV VIA+L
Sbjct:   103 EKPLLSVSTFVQAARNNVLLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVL 162

Query:    75 LKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSL 134
             LK++MKRRFSIIQWEALALLLIGISVNQLRSLPEG +A+G+P+ATGAY+ T+IFVTVPS+
Sbjct:   163 LKMVMKRRFSIIQWEALALLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSM 222

Query:   135 ASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATML 194
             ASVFNEYALKSQYDTSIY QNLFLYGYGAIFNFLGI+ T ++KGP SFDILQGHS+ATM 
Sbjct:   223 ASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMF 282

Query:   195 LICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFI 254
             LI NNAAQGILSSFFFKYADTILKKYSSTVATIFTG+ASAALFGH +TMNF+LGISIVFI
Sbjct:   283 LILNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFI 342

Query:   255 SMHQFFSPLSKVKDEPK-NISLESVDSPKNKRSKDTSFIGMAAGANEDASHRAVNEEKAP 313
             SMHQFFSPL+K +DE + N +LE + + K+    + SFI MAAGANE+ASHR  ++++ P
Sbjct:   343 SMHQFFSPLAKARDEQQQNGNLE-LGNTKDTHRANESFINMAAGANEEASHRGESDDRTP 401

Query:   314 LLP 316
             LLP
Sbjct:   402 LLP 404

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2152955 AT5G41760 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 80/244 (32%), Positives = 138/244 (56%)

Query:    33 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALA 92
             L  +P+ +Y I+N ++F    Y + +T +++ NLK+    +L ++ +KR+ S +QW A+ 
Sbjct:    79 LFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFLKRKLSKLQWMAIG 138

Query:    93 LLLIGISVNQLRSLPEGT--SALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTS 150
             LL +G + +Q++   E +  S    P+    YL  ++   + +LA ++ E+ +K   DT 
Sbjct:   139 LLAVGTTTSQVKGCGEASCDSLFTAPIQ--GYLLGILSAGLSALAGIYTEFLMKRNNDT- 195

Query:   151 IYHQNLFLYGYGAIFNFLGIVITAM---F-KGPSSFDILQGHSKATMLLICNNAAQGILS 206
             +Y QNL LY +G++FN   ++       F KGP    I  G+S  T L++ N  + G+L 
Sbjct:   196 LYWQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSITTWLVVLNLGSTGLLV 255

Query:   207 SFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKV 266
             S+  KYAD I+K YS+++A + T +AS  LF    T+   LGI I  +S+H +F+P   +
Sbjct:   256 SWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLGIVICIMSLHMYFAPPHTL 315

Query:   267 KDEP 270
              D P
Sbjct:   316 VDLP 319

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS;IDA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:504955503 AT4G35335 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 76/222 (34%), Positives = 117/222 (52%)

Query:    36 VPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLL 95
             +PA LY   N L++ +  Y +    ++L NL +    +L +II+KR+ S IQW    LL 
Sbjct:   128 IPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSEIQWAGFILLC 187

Query:    96 IGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQN 155
              G +  QL S  +      LP  T A +  L+       A V+ E  +K +   +I  QN
Sbjct:   188 CGCTTAQLNSNSDRVLQTSLPGWTMAIVMALL----SGFAGVYTEAIIKKRPSRNINVQN 243

Query:   156 LFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADT 215
              +LY +G  FN + IVI   F   ++     G+S  T+L+I N+A  GI  S   KYAD 
Sbjct:   244 FWLYVFGMAFNAVAIVIQD-FDAVANKGFFHGYSFITLLMILNHALSGIAVSMVMKYADN 302

Query:   216 ILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMH 257
             I+K YS++VA + T + S  LF   L++ F LG ++V +S++
Sbjct:   303 IVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVY 344

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|F1NDA7 SLC35A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 71/232 (30%), Positives = 128/232 (55%)

Query:    35 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALL 94
             A+ A LYA NN L   MQL+ +P+T ++LSNLK+   ALL  + +++R  + QW AL LL
Sbjct:    72 ALSALLYAANNNLVVHMQLFMDPSTYQILSNLKIVSTALLYSLFLRQRLRVRQWLALCLL 131

Query:    95 LI-GISVN--QLRSLPEGT---SALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYD 148
             +  G+S +   LR  P G+   SA+ L +     L   ++  +  L++V+ E  LK+Q  
Sbjct:   132 MAAGVSYSCGGLRD-PRGSGSPSAMQLHITLVGLLLISVYCLISGLSAVYTEAILKTQA- 189

Query:   149 TSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSF 208
               +  QN+FLY +G + N +G   ++  +G      L+G S   ++++ + A  G++ S 
Sbjct:   190 LPLNLQNIFLYFFGVLVNLVGHFWSSTERG-----FLEGFSFWVLVIVVSQALNGLIMSV 244

Query:   209 FFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 260
               K++  I + +  + + +   L S ALF   LT+ F + +S + +++H ++
Sbjct:   245 VMKHSSNITRLFVISCSILVNALLSVALFNLQLTLLFFIAVSCIGLAVHLYY 296

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-061103-595 slc35a4 "solute carrier family 35, member A4" [Danio rerio (taxid:7955)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 66/228 (28%), Positives = 114/228 (50%)

Query:    35 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALL 94
             AVPA LYA NN+L   MQ Y +P++ ++LSNLK+   ALL    + +R    QW A+ LL
Sbjct:    93 AVPAVLYAFNNHLVVFMQAYMDPSSFQVLSNLKIASTALLYTSCLGKRLHRRQWFAMGLL 152

Query:    95 L-IGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYH 153
             +  G+S +      EG     + + +   L  L++  V  LA+V+ E  LKSQ    +  
Sbjct:   153 VSAGVSHSCFSYDLEGKQETAVYITSWGLLLVLVYCFVSGLAAVYTERVLKSQR-LPLSM 211

Query:   154 QNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYA 213
             QNLFLY +G + N     + +   G       +G+S    +++    A G+L S   K+ 
Sbjct:   212 QNLFLYAFGVVVN-----LASHLSGGEQKGFFEGYSAVVWVIVAGQVANGLLMSVVMKHG 266

Query:   214 DTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261
               I + +  + A +   + S  + G  LT  F+  + ++  +++ +++
Sbjct:   267 TGITRLFVISSAMLVNAVLSWGILGVQLTGYFLFPVVLIGWAVYLYYT 314

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|Q8MIA3 SLC35A4 "Probable UDP-sugar transporter protein SLC35A4" [Sus scrofa (taxid:9823)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 76/238 (31%), Positives = 119/238 (50%)

Query:    35 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALL 94
             A+ A LY  NN L   +Q Y +P+T ++LSNLK+   AL   + ++RR S  Q  AL LL
Sbjct:    90 ALSALLYGANNNLVIHLQHYMDPSTYQVLSNLKIGSTALFYCLCLRRRLSARQGLALLLL 149

Query:    95 LIG---ISVNQLRS----LPEG--TSALG---LPVATGAYLYTLIFVTVPSLASVFNEYA 142
             +      +   LR     LPE   T+A G   L V     L  L++  +  L+SV+ E  
Sbjct:   150 MAAGACYAAGGLRDPGSPLPESPSTAASGPVPLHVTAPGLLLLLLYCLISGLSSVYTELL 209

Query:   143 LKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQ 202
             LK Q    +  QNLFLY +G + N LG+       GP    +L+G S    L++ + A  
Sbjct:   210 LKRQR-LPLALQNLFLYTFGVLLN-LGLHAGG---GPGP-GLLEGFSGWAALVVLSQALN 263

Query:   203 GILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 260
             G+L S   K+  +I + +  + + +   + SAAL    LT  F L   ++ +++H ++
Sbjct:   264 GLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAALLRLQLTAAFFLAALLIGLAVHLYY 321

GO:0016021 "integral to membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|G5EFD3 srf-3 "Protein SRF-3, isoform b" [Caenorhabditis elegans (taxid:6239)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 62/243 (25%), Positives = 118/243 (48%)

Query:    24 LLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRF 83
             +L+   + + + +PA +Y + N L ++   + + AT  + S LK+F  A+   II++R  
Sbjct:    70 ILEQPYDTLKVCIPAMIYIVQNNLFYVAASHLDAATFMITSQLKIFTAAIFTVIILRRSL 129

Query:    84 SIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYAL 143
             +  QW ALA+L +G+S+ QL+      S+   P     ++  ++   +   A ++ E  L
Sbjct:   130 NRTQWFALAVLFVGVSLVQLQGTKAKESSGESPFV--GFVAVVVACCLSGFAGIYFEKIL 187

Query:   144 KSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQG 203
             K     S++ +N+ +  +    +F  I +    K  + + +L G      L +      G
Sbjct:   188 KGSAPVSLWMRNVQMAVFSIPASFSAIYMQDS-KTVNEYGLLYGFDSIVWLTVLWYGVGG 246

Query:   204 ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 263
             +  +   KYAD I K ++++VA I + + S  LF    +  F+LG S+V  S+  + S  
Sbjct:   247 LSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSFTFLLGASLVIFSIFLYSSHQ 306

Query:   264 SKV 266
             S V
Sbjct:   307 SMV 309

GO:0072334 "UDP-galactose transmembrane transport" evidence=IDA

WB|WBGene00005153 srf-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 243 (90.6 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 62/243 (25%), Positives = 118/243 (48%)

Query:    24 LLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRF 83
             +L+   + + + +PA +Y + N L ++   + + AT  + S LK+F  A+   II++R  
Sbjct:   110 ILEQPYDTLKVCIPAMIYIVQNNLFYVAASHLDAATFMITSQLKIFTAAIFTVIILRRSL 169

Query:    84 SIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYAL 143
             +  QW ALA+L +G+S+ QL+      S+   P     ++  ++   +   A ++ E  L
Sbjct:   170 NRTQWFALAVLFVGVSLVQLQGTKAKESSGESPFV--GFVAVVVACCLSGFAGIYFEKIL 227

Query:   144 KSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQG 203
             K     S++ +N+ +  +    +F  I +    K  + + +L G      L +      G
Sbjct:   228 KGSAPVSLWMRNVQMAVFSIPASFSAIYMQDS-KTVNEYGLLYGFDSIVWLTVLWYGVGG 286

Query:   204 ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 263
             +  +   KYAD I K ++++VA I + + S  LF    +  F+LG S+V  S+  + S  
Sbjct:   287 LSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSFTFLLGASLVIFSIFLYSSHQ 346

Query:   264 SKV 266
             S V
Sbjct:   347 SMV 349

GO:0016020 "membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IDA

GO:0015785 "UDP-galactose transport" evidence=IDA

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IC

UNIPROTKB|Q93890 srf-3 "UDP-galactose/UDP-N-acetylglucosamine transporter srf-3" [Caenorhabditis elegans (taxid:6239)]

 Score = 243 (90.6 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 62/243 (25%), Positives = 118/243 (48%)

Query:    24 LLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRF 83
             +L+   + + + +PA +Y + N L ++   + + AT  + S LK+F  A+   II++R  
Sbjct:   110 ILEQPYDTLKVCIPAMIYIVQNNLFYVAASHLDAATFMITSQLKIFTAAIFTVIILRRSL 169

Query:    84 SIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYAL 143
             +  QW ALA+L +G+S+ QL+      S+   P     ++  ++   +   A ++ E  L
Sbjct:   170 NRTQWFALAVLFVGVSLVQLQGTKAKESSGESPFV--GFVAVVVACCLSGFAGIYFEKIL 227

Query:   144 KSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQG 203
             K     S++ +N+ +  +    +F  I +    K  + + +L G      L +      G
Sbjct:   228 KGSAPVSLWMRNVQMAVFSIPASFSAIYMQDS-KTVNEYGLLYGFDSIVWLTVLWYGVGG 286

Query:   204 ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 263
             +  +   KYAD I K ++++VA I + + S  LF    +  F+LG S+V  S+  + S  
Sbjct:   287 LSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSFTFLLGASLVIFSIFLYSSHQ 346

Query:   264 SKV 266
             S V
Sbjct:   347 SMV 349

GO:0072334 "UDP-galactose transmembrane transport" evidence=IDA

GO:0030173 "integral to Golgi membrane" evidence=IDA

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=IDA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IDA

GO:0015785 "UDP-galactose transport" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GY97	CSTR2_ARATH	No assigned EC number	0.7880	0.9463	0.7389	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
pfam04142	238	pfam04142, Nuc_sug_transp, Nucleotide-sugar transp	5e-31
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	3e-13

>gnl|CDD|217924 pfam04142, Nuc_sug_transp, Nucleotide-sugar transporter

 Score =  116 bits (292), Expect = 5e-31
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 12/225 (5%)

Query: 34  LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALAL 93
           +AVPAF+Y + N L ++     + AT ++   LK+   AL   +++ R+ S  QW +L L
Sbjct: 20  VAVPAFIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVLMLGRKLSWYQWASLLL 79

Query: 94  LLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTV----PSLASVFNEYALKSQYDT 149
           L +G+++ QL      T++     A       L  V         A V+ E  LK   +T
Sbjct: 80  LFLGVAIVQLDQKSSETNSKR--GAEQNPGLGLSAVLAACFTSGFAGVYFEKILKGS-NT 136

Query: 150 SIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD--ILQGHSKATMLLICNNAAQGILSS 207
           SI+ +N+ LY +G  F  L   +     G +  +     G++     ++   A  G++ +
Sbjct: 137 SIWIRNIQLYFFGIFFALLTCWLY---DGSAISEKGFFFGYTAFVWAVVLLQAVGGLVVA 193

Query: 208 FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIV 252
              KYAD ILK +++++A I + +AS  LF    T+ F+LG  +V
Sbjct: 194 VVVKYADNILKGFATSLAIILSTVASVLLFDFRPTLTFLLGAILV 238

This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid, SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc. Length = 238

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 34  LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALAL 93
           L+VP  +    N L  I  L    A  K ++ LK+   AL+    +       QW +L L
Sbjct: 2   LSVPIHIIFKQNNLVLIA-LGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKL 60

Query: 94  LLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYH 153
           L +G+++ Q+      T   G PV   + + + +  +    A V+ E  LK   DT  + 
Sbjct: 61  LKLGVAIVQMVQSSAKTLMFGNPVVGLSAVLSALLSSG--FAGVYFEKILKD-GDTMFWS 117

Query: 154 QNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYA 213
           +NL L  +G    F  ++ +      S+F    G+  A  ++   N   G+      +YA
Sbjct: 118 RNLQLPLFGLFSTFSVLLWSDGTL-ISNFGFFIGYPTAVWIVGLLNVGGGLCIGGVVRYA 176

Query: 214 DTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFIS 255
           D   K + + ++ I + LAS  LF   ++  F LG  +VF++
Sbjct: 177 DNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLA 218

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	100.0
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	100.0
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.96
PLN00411	358	nodulin MtN21 family protein; Provisional	99.93
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.9
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.9
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.88
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.88
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.88
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.87
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.87
PRK11272	292	putative DMT superfamily transporter inner membran	99.85
PRK11689	295	aromatic amino acid exporter; Provisional	99.85
PRK15430	296	putative chloramphenical resistance permease RarD;	99.84
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.8
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.79
KOG1581	327	consensus UDP-galactose transporter related protei	99.73
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.72
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.7
KOG1580	337	consensus UDP-galactose transporter related protei	99.65
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.62
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.6
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.56
KOG2765	416	consensus Predicted membrane protein [Function unk	99.54
KOG2766	336	consensus Predicted membrane protein [Function unk	99.52
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.4
COG2962	293	RarD Predicted permeases [General function predict	99.4
KOG1582	367	consensus UDP-galactose transporter related protei	99.34
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.3
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.28
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.25
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.25
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.07
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.0
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.8
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.8
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.68
COG2510	140	Predicted membrane protein [Function unknown]	98.63
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.59
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.58
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.52
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.38
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.15
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.14
COG2510	140	Predicted membrane protein [Function unknown]	98.12
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.12
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.03
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.03
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.01
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.0
COG2076	106	EmrE Membrane transporters of cations and cationic	97.99
PRK11689	295	aromatic amino acid exporter; Provisional	97.96
PRK11431	105	multidrug efflux system protein; Provisional	97.95
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.95
PRK11272	292	putative DMT superfamily transporter inner membran	97.9
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.88
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.86
PRK15430	296	putative chloramphenical resistance permease RarD;	97.73
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.72
PLN00411	358	nodulin MtN21 family protein; Provisional	97.71
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.65
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.64
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.6
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.55
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.53
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.46
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.43
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.34
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.25
PRK13499	345	rhamnose-proton symporter; Provisional	97.16
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.15
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.15
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.01
PF13536	113	EmrE: Multidrug resistance efflux transporter	96.84
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.83
COG2076	106	EmrE Membrane transporters of cations and cationic	96.76
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.63
PRK11431	105	multidrug efflux system protein; Provisional	96.49
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.44
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.23
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	95.92
PRK13499	345	rhamnose-proton symporter; Provisional	95.81
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	95.78
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.7
KOG1580	337	consensus UDP-galactose transporter related protei	95.24
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	94.99
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	94.78
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	94.56
KOG1581	327	consensus UDP-galactose transporter related protei	94.05
COG2962	293	RarD Predicted permeases [General function predict	94.0
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	93.54
KOG4831	125	consensus Unnamed protein [Function unknown]	92.65
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	89.33
KOG2922	335	consensus Uncharacterized conserved protein [Funct	89.19
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	89.17
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	87.83
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	87.42
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	85.49
KOG2765	416	consensus Predicted membrane protein [Function unk	84.3
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	83.57
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	83.48
KOG4510	346	consensus Permease of the drug/metabolite transpor	81.65

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.7e-40  Score=305.61  Aligned_cols=240  Identities=32%  Similarity=0.508  Sum_probs=210.7

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 021119           24 LLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL  103 (317)
Q Consensus        24 ~~~~~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~  103 (317)
                      ...++|+.++.++||++|+++|+++|+++.++|++++|+..|++++.||+|+.++|+||++++||.++++.+.|+++++.
T Consensus        85 i~~~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~  164 (345)
T KOG2234|consen   85 ILAAPRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL  164 (345)
T ss_pred             HHhChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence            44445678899999999999999999999999999999999999999999999999999999999999999999999994


Q ss_pred             CCCCCCCCC--CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 021119          104 RSLPEGTSA--LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS  181 (317)
Q Consensus       104 ~~~~~~~~~--~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~  181 (317)
                      +...+.+..  ........|+..++.+|++|++++||.||++|+. +.+.|+||.+++++|+++++..+.......+. +
T Consensus       165 ~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s-~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~-~  242 (345)
T KOG2234|consen  165 PSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS-NVSLWIRNIQLYFFGILFNLLTILLQDGEAIN-E  242 (345)
T ss_pred             cCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHhhccccccc-c
Confidence            432211111  1122346799999999999999999999999987 68999999999999999999876543212222 5


Q ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          182 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       182 ~~~~~~~~~~~~~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      .|+++||++.+|+.++.+|.+|+++++++||+|++.|.++++++++++++.|+++||.++|..+++|+.+|+.++++|+.
T Consensus       243 ~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~  322 (345)
T KOG2234|consen  243 YGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSL  322 (345)
T ss_pred             CCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             CCCc
Q 021119          262 PLSK  265 (317)
Q Consensus       262 ~~~~  265 (317)
                      +..+
T Consensus       323 ~P~~  326 (345)
T KOG2234|consen  323 YPAR  326 (345)
T ss_pred             CCcc
Confidence            4333

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=100.00  E-value=1.9e-38  Score=287.82  Aligned_cols=230  Identities=32%  Similarity=0.517  Sum_probs=202.5

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 021119           21 SFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISV  100 (317)
Q Consensus        21 ~~~~~~~~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~i  100 (317)
                      -...++++|+.+++++||++|+++|++.|++++++||+++|+++|+++++||++++++||||++++||+|+++.++|+++
T Consensus         7 ~~~~~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~l   86 (244)
T PF04142_consen    7 KDEVWKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVL   86 (244)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHhe
Confidence            45678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCC--CC------CChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 021119          101 NQLRSLPEGTSA--LG------LPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVI  172 (317)
Q Consensus       101 v~~~~~~~~~~~--~~------~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~  172 (317)
                      ++.++....+..  .+      ......|+++++++++++|+++||.||++|+. +.++|.||+|++++|++++++....
T Consensus        87 v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~-~~s~~~~N~qL~~~gi~~~~~~~~~  165 (244)
T PF04142_consen   87 VQLSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS-NVSLWIQNMQLYLFGILFNLLALLL  165 (244)
T ss_pred             eecCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHhc
Confidence            988765331110  11      11245799999999999999999999999997 6899999999999999998876432


Q ss_pred             HHhhcCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 021119          173 TAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIV  252 (317)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~~~~~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lV  252 (317)
                      .. .+.....|+++||++++|..++.++++|+++++++||+|++.|.++++++++++.+.++++||.++|..+++|..+|
T Consensus       166 ~~-~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  166 SD-GSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             cc-ccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            11 11223457899999999999999999999999999999999999999999999999999999999999999998764

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.96  E-value=7.8e-27  Score=219.51  Aligned_cols=264  Identities=16%  Similarity=0.187  Sum_probs=196.6

Q ss_pred             CCcchhhHHHHHHHHHH-HHH-HHHH-----HHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHH
Q 021119            1 MPRTANLYRMVLFYLQM-PVI-SFIL-----LQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIAL   73 (317)
Q Consensus         1 ~~~~~~~~~~~~~~~~~-p~~-~~~~-----~~~~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~tal   73 (317)
                      .|-+|.++-.++...+. |.. .|+-     ...+++||+|++.|+++...|.+...|++|++.+.++++.++.++++++
T Consensus        42 ~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~  121 (334)
T PF06027_consen   42 IPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMI  121 (334)
T ss_pred             CcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHH
Confidence            36677776654433332 221 1211     1123789999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHH
Q 021119           74 LLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYH  153 (317)
Q Consensus        74 ls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~  153 (317)
                      +|+++||||+++.|++|+++.+.|+.++...+...++...+.+....|++++++++++.|+++|++|+..|+.   +...
T Consensus       122 LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~  198 (334)
T PF06027_consen  122 LSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA---PRVE  198 (334)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHH
Confidence            9999999999999999999999999998887654332222223456799999999999999999999999875   3344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHH-HH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021119          154 QNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLL-IC---NNAAQGILSSFFFKYADTILKKYSSTVATIFT  229 (317)
Q Consensus       154 ~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~-il---~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t  229 (317)
                      ...+++++|.+++.+.+.   +.|..+...+  .|+...+.. +.   ......+.+..++++.++..-+....++.+++
T Consensus       199 ~lg~~Glfg~ii~~iq~~---ile~~~i~~~--~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~a  273 (334)
T PF06027_consen  199 FLGMLGLFGFIISGIQLA---ILERSGIESI--HWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYA  273 (334)
T ss_pred             HHHHHHHHHHHHHHHHHH---heehhhhhcc--CCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHH
Confidence            445778888888776543   2443321111  233332222 11   12223345667788888888888888899999


Q ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Q 021119          230 GLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKN  272 (317)
Q Consensus       230 ~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~~~~~~  272 (317)
                      .++++++||+++++.+++|.++|++|..+|+...++.++++++
T Consensus       274 li~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~~~  316 (334)
T PF06027_consen  274 LIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEARRN  316 (334)
T ss_pred             HHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccccchh
Confidence            9999999999999999999999999999999855555444433

Some of the sequences in this family are annotated as putative membrane proteins.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.93  E-value=3.2e-23  Score=198.07  Aligned_cols=251  Identities=13%  Similarity=0.081  Sum_probs=174.0

Q ss_pred             chhhHHH-HHHHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHH
Q 021119            4 TANLYRM-VLFYLQMPVISFILL------QAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLK   76 (317)
Q Consensus         4 ~~~~~~~-~~~~~~~p~~~~~~~------~~~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~   76 (317)
                      +--.||+ ++..+++|+....-.      .++|++.++++.+++.+.++.+.++|++|++++.++++.++.|++++++++
T Consensus        44 ~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~  123 (358)
T PLN00411         44 PFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAI  123 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHH
Confidence            3456785 446677777643211      124556778888887777888999999999999999999999999999999


Q ss_pred             HH------hcCCCCHHHHHHHHHHHHHHHHhhcCCCCCC--------------C--CCCCCChhhhHHHHHHHHHHHHHH
Q 021119           77 II------MKRRFSIIQWEALALLLIGISVNQLRSLPEG--------------T--SALGLPVATGAYLYTLIFVTVPSL  134 (317)
Q Consensus        77 l~------L~erls~~q~lal~l~~~Gv~iv~~~~~~~~--------------~--~~~~~~~~~~G~~l~l~a~~~sal  134 (317)
                      ++      +|||++++||+|++++++|+.++...+....              .  ...+......|.+++++++++||+
T Consensus       124 ~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~  203 (358)
T PLN00411        124 IFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSV  203 (358)
T ss_pred             HHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHH
Confidence            99      6999999999999999999998765322100              0  000111124588999999999999


Q ss_pred             HHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHHHH-----H
Q 021119          135 ASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSF-----F  209 (317)
Q Consensus       135 ~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~ai~g~~v~~-----~  209 (317)
                      +.++.|+..+++  .+....+.+...++.+...   ......++.........++... ..+++.++.. ..+|     .
T Consensus       204 ~~il~~~~~~~~--~~~~~~t~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~t-~lay~lw~~~  276 (358)
T PLN00411        204 SFILQAHIMSEY--PAAFTVSFLYTVCVSIVTS---MIGLVVEKNNPSVWIIHFDITL-ITIVTMAIIT-SVYYVIHSWT  276 (358)
T ss_pred             HHHHHHHHHHHc--CcHhHHHHHHHHHHHHHHH---HHHHHHccCCcccceeccchHH-HHHHHHHHHH-HHHHHHHHHH
Confidence            999999988776  2222222222222222211   1122233321111122233332 2355555543 2344     4


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          210 FKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       210 ~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      +++.++...+...++.|+++.++|++++||++++.+++|+++|+.|+++.++
T Consensus       277 v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        277 VRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW  328 (358)
T ss_pred             HhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            4566777888888999999999999999999999999999999999999876

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.90  E-value=7.4e-22  Score=184.89  Aligned_cols=235  Identities=17%  Similarity=0.256  Sum_probs=179.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 021119           29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE  108 (317)
Q Consensus        29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~  108 (317)
                      +++++++.+++++++++.+.+.+++|+|.++.+++++++|+++++++.+++|||++++||+++++.++|+++....+..+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~  141 (303)
T PF08449_consen   62 IPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS  141 (303)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999998765432


Q ss_pred             CCCCCCC-ChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC--cccccc
Q 021119          109 GTSALGL-PVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGP--SSFDIL  185 (317)
Q Consensus       109 ~~~~~~~-~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~--~~~~~~  185 (317)
                      ....... .....|+.+++++.++.|+.++++||+++++ +.+.+....+..+++.++..+....  +..++  +...+.
T Consensus       142 ~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~-~~~~~~~mfy~n~~~~~~~~~~~~~--l~~~~~~~~~~f~  218 (303)
T PF08449_consen  142 SSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKY-GKSPWELMFYTNLFSLPFLLILLFL--LPTGEFRSAIRFI  218 (303)
T ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHH--HHhhHhhHHHHHH
Confidence            2111111 1112499999999999999999999999987 4455545455566777765554432  00111  111122


Q ss_pred             cccchHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119          186 QGHSKATM---LLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  262 (317)
Q Consensus       186 ~~~~~~~~---~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~  262 (317)
                      ..++...+   ...+..+++...+.+..+..++.......+++.+++.++|+++||+++++.+++|.++++.|..+|+..
T Consensus       219 ~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~  298 (303)
T PF08449_consen  219 SAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA  298 (303)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence            22222111   122344555566677778889999999999999999999999999999999999999999999999985


Q ss_pred             CCcC
Q 021119          263 LSKV  266 (317)
Q Consensus       263 ~~~~  266 (317)
                      ++|+
T Consensus       299 ~~k~  302 (303)
T PF08449_consen  299 KKKK  302 (303)
T ss_pred             hccC
Confidence            4443

; GO: 0055085 transmembrane transport

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.90  E-value=4.2e-22  Score=186.19  Aligned_cols=223  Identities=11%  Similarity=0.130  Sum_probs=162.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021119           28 ARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP  107 (317)
Q Consensus        28 ~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~  107 (317)
                      +||+++.+..|++++.++.+.+++++|+++++++++.++.|+++++++++++|||+++++|.+++++++|+.+....+. 
T Consensus        62 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~-  140 (302)
T TIGR00817        62 SALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTEL-  140 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcc-
Confidence            3567778888999999999999999999999999999999999999999999999999999999999999987642111 


Q ss_pred             CCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-c-ccc
Q 021119          108 EGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS-F-DIL  185 (317)
Q Consensus       108 ~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~-~-~~~  185 (317)
                              +.+..|+++.+++++++|+++++.||..+++ +.+......+....+.++.+|...   ..++... . +..
T Consensus       141 --------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~p~~~---~~~~~~~~~~~~~  208 (302)
T TIGR00817       141 --------SFNWAGFLSAMISNITFVSRNIFSKKAMTIK-SLDKTNLYAYISIMSLFLLSPPAF---ITEGPPFLPHGFM  208 (302)
T ss_pred             --------cccHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCcccHHHHHHHHHHHHHHHHHH---HHcchHHHHHHHH
Confidence                    1234699999999999999999999987732 112222333334455555444322   2333210 0 000


Q ss_pred             c---ccch-HHHHHHHHHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 021119          186 Q---GHSK-ATMLLICNNAAQG-----ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISM  256 (317)
Q Consensus       186 ~---~~~~-~~~~~il~~ai~g-----~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv  256 (317)
                      .   ..+. ..+...+..+++.     .......++.++.+.+....+.++++.++|++++||++|..+++|+++++.|+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv  288 (302)
T TIGR00817       209 QAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGV  288 (302)
T ss_pred             HhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHH
Confidence            0   0111 1121122222211     11223567888888899999999999999999999999999999999999999


Q ss_pred             HHhcCCC
Q 021119          257 HQFFSPL  263 (317)
Q Consensus       257 ~ly~~~~  263 (317)
                      ++|++.+
T Consensus       289 ~l~~~~k  295 (302)
T TIGR00817       289 FLYSRVK  295 (302)
T ss_pred             HHHHHHh
Confidence            9998743

specificities overlap.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.88  E-value=3.2e-20  Score=173.47  Aligned_cols=225  Identities=17%  Similarity=0.118  Sum_probs=159.1

Q ss_pred             hhHHHHHHHHHH-HHHHHHHHHHHhc-CCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021119           30 NNVLLAVPAFLY-AINNYLKFIMQLY-FNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP  107 (317)
Q Consensus        30 ~~~~~~~~all~-~~~n~l~f~al~~-l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~  107 (317)
                      ++......+++. ..+..+.|.+++| .|++.+.++.++.|+++++++++++|||++++||++++++++|+.++..++..
T Consensus        57 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~  136 (299)
T PRK11453         57 PLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLN  136 (299)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCC
Confidence            333344445543 4566677889988 68999999999999999999999999999999999999999999988754321


Q ss_pred             CCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHhhcCCccc-ccc
Q 021119          108 EGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFN-FLGIVITAMFKGPSSF-DIL  185 (317)
Q Consensus       108 ~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~-~~~l~~~~~~~g~~~~-~~~  185 (317)
                            +.+.+..|+++.+++++++|+++++.||..++.  .++......  .+..... .+........+++... ..+
T Consensus       137 ------~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (299)
T PRK11453        137 ------GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHS--TRPAVMSLV--VWSALIPIIPFFVASLILDGSATMIHSL  206 (299)
T ss_pred             ------CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccchhHHH--HHHHHHHHHHHHHHHHHhcCchhhhhhh
Confidence                  111234699999999999999999999976543  122111111  1111111 1221112223332110 112


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119          186 QGHSKATMLLICNNAAQGILSSFFF-----KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  260 (317)
Q Consensus       186 ~~~~~~~~~~il~~ai~g~~v~~~~-----k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~  260 (317)
                      ..++...|..+++.++.+...++.+     ++.++...+...++.|+++.+++++++||++++.+++|+++|+.|+++-.
T Consensus       207 ~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        207 VTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV  286 (299)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence            3445567778888888887777655     44556667777889999999999999999999999999999999999876


Q ss_pred             CCCC
Q 021119          261 SPLS  264 (317)
Q Consensus       261 ~~~~  264 (317)
                      .+.+
T Consensus       287 ~~~~  290 (299)
T PRK11453        287 FGLR  290 (299)
T ss_pred             cchh
Confidence            6443

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.88  E-value=2.3e-20  Score=178.21  Aligned_cols=221  Identities=12%  Similarity=0.162  Sum_probs=162.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q 021119           30 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEG  109 (317)
Q Consensus        30 ~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~  109 (317)
                      +++..+..|+++...+...+.|+++.+++.+++++++.|+++++++++++|||+++++++++++.++|+.+....+.   
T Consensus       113 ~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~---  189 (350)
T PTZ00343        113 FLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL---  189 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc---
Confidence            55668888999987777788999999999999999999999999999999999999999999999999999864221   


Q ss_pred             CCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCC--chhHHHHHHH--HHHHHHHHHHHHHHHHhhcCCccccc-
Q 021119          110 TSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYD--TSIYHQNLFL--YGYGAIFNFLGIVITAMFKGPSSFDI-  184 (317)
Q Consensus       110 ~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~--~~~~~~~~~l--~~~g~i~~~~~l~~~~~~~g~~~~~~-  184 (317)
                            +.+..|+++++++++++|+++++.||.+++...  .+....+.+.  ..+|.++.+|...   ..|+...... 
T Consensus       190 ------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~---~~e~~~~~~~~  260 (350)
T PTZ00343        190 ------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVL---FFEGKKWVPVW  260 (350)
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHH
Confidence                  124579999999999999999999999876411  0111122322  4466666665433   1333210000 


Q ss_pred             ------ccccch-HHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 021119          185 ------LQGHSK-ATMLLICNNAAQGILS----SFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVF  253 (317)
Q Consensus       185 ------~~~~~~-~~~~~il~~ai~g~~v----~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi  253 (317)
                            +..+.. ..+..++..++.....    .+.+++.++.+.+...++.++++.++|+++|||++|..+++|.++++
T Consensus       261 ~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii  340 (350)
T PTZ00343        261 TNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAI  340 (350)
T ss_pred             HHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHH
Confidence                  111111 1111222222222221    23567788999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q 021119          254 ISMHQFFSP  262 (317)
Q Consensus       254 ~gv~ly~~~  262 (317)
                      .|+++|+..
T Consensus       341 ~Gv~lYs~~  349 (350)
T PTZ00343        341 LGALLYSLF  349 (350)
T ss_pred             HHHHHHhhc
Confidence            999999873

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.88  E-value=7.1e-20  Score=166.75  Aligned_cols=213  Identities=15%  Similarity=0.112  Sum_probs=157.3

Q ss_pred             HhhhhhHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119           26 QAARNNVLLAVPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR  104 (317)
Q Consensus        26 ~~~~~~~~~~~~all-~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~  104 (317)
                      +++++++++.+.+.+ ..+++.+.|+|++|+|+++.+++.++.|+++++++++++|||++++||.+++++++|+.++..+
T Consensus        41 ~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~  120 (260)
T TIGR00950        41 PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD  120 (260)
T ss_pred             cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence            455677777777765 5799999999999999999999999999999999999999999999999999999999988654


Q ss_pred             CCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc
Q 021119          105 SLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDI  184 (317)
Q Consensus       105 ~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~  184 (317)
                      +..      +  ....|+.+.++++++++.++++.||..++. +.+....+.+...++.++..+..    ...+...   
T Consensus       121 ~~~------~--~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~---  184 (260)
T TIGR00950       121 GNL------S--INPAGLLLGLGSGISFALGTVLYKRLVKKE-GPELLQFTGWVLLLGALLLLPFA----WFLGPNP---  184 (260)
T ss_pred             Ccc------c--ccHHHHHHHHHHHHHHHHHHHHHhHHhhcC-CchHHHHHHHHHHHHHHHHHHHH----HhcCCCC---
Confidence            311      1  134688999999999999999999987654 22222222222334444333222    1222211   


Q ss_pred             ccccchHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 021119          185 LQGHSKATMLLICNNAAQGIL-----SSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISM  256 (317)
Q Consensus       185 ~~~~~~~~~~~il~~ai~g~~-----v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv  256 (317)
                        ..+...|..+++.+..+..     ..+..|+.++.......++.|+++.+++++++||+++..+++|..+++.|+
T Consensus       185 --~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       185 --QALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             --CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence              1133344334444444333     344567778888888889999999999999999999999999999999886

>TIGR00803 nst UDP-galactose transporter

Probab=99.87  E-value=2e-21  Score=174.04  Aligned_cols=221  Identities=24%  Similarity=0.293  Sum_probs=185.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021119           34 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL  113 (317)
Q Consensus        34 ~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~  113 (317)
                      +.+|+..|+.+|.+.++++.+.++...+.. +.+.+.++++....++++++..||.++.....|+..++.++..+...  
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~--   78 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTL--   78 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccc--
Confidence            568999999999999999999999999999 99999999999999999999999999999999998886554221111  


Q ss_pred             CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHH
Q 021119          114 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATM  193 (317)
Q Consensus       114 ~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~  193 (317)
                      .......|..+.+.++.+++++++|.|+..|++ +..++.++.++++++.+.+........ .+.....+++++++...|
T Consensus        79 ~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  156 (222)
T TIGR00803        79 MFGNPVVGLSAVLSALLSSGFAGVYFEKILKDG-DTMFWSRNLQLPLFGLFSTFSVLLWSD-GTLISNFGFFIGYPTAVW  156 (222)
T ss_pred             ccccHHHHHHHHHHHHHHHhhhHHHHHHcccCC-CCchHHHHHHHHHHHHHHHHHHHhhcc-cchhhccCcccCCchHHH
Confidence            111245687888888999999999999987765 567899999999999886554332210 011112345678888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 021119          194 LLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF  259 (317)
Q Consensus       194 ~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly  259 (317)
                      ..++.+++++.++++++||.|++++.+..+++++++.++|+++|||+++..+++|+.+|+.|+++|
T Consensus       157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999876

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.87  E-value=1.2e-20  Score=169.25  Aligned_cols=230  Identities=15%  Similarity=0.171  Sum_probs=171.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC-C
Q 021119           31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE-G  109 (317)
Q Consensus        31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~-~  109 (317)
                      .+.+..|++|+.....++|.|+.+++++.+|+++...++|+++||..+|+++++.+||+++....+|++++...+.-. .
T Consensus        86 p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~  165 (372)
T KOG3912|consen   86 PVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT  165 (372)
T ss_pred             cceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc
Confidence            445778999999999999999999999999999999999999999999999999999999999999999997764311 1


Q ss_pred             CCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHH-HHHHHHHHHHHHhhcCCc----cccc
Q 021119          110 TSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYG-AIFNFLGIVITAMFKGPS----SFDI  184 (317)
Q Consensus       110 ~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g-~i~~~~~l~~~~~~~g~~----~~~~  184 (317)
                      ++..+......|+++.+.+...-|++.|++||.+|+++-.|..... +-+.|| ++++++.+....+..|.+    ..+.
T Consensus       166 ~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg-~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~  244 (372)
T KOG3912|consen  166 DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVG-WEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGV  244 (372)
T ss_pred             CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhh-hhhhHHHHHHHHHHHHHhheecCCcCcCCCCcc
Confidence            1112222345799999999999999999999999998444443333 447788 455554444333333311    1222


Q ss_pred             ccccch-------HHHHHH------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 021119          185 LQGHSK-------ATMLLI------CNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISI  251 (317)
Q Consensus       185 ~~~~~~-------~~~~~i------l~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~l  251 (317)
                      ++.|.-       ...+.+      ...|.++..--.+.|+.++.++.+...+++.+.+++++.+++|.+...++.|+++
T Consensus       245 ~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFli  324 (372)
T KOG3912|consen  245 LEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLI  324 (372)
T ss_pred             hhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence            322210       000011      1112222223346688999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 021119          252 VFISMHQFFS  261 (317)
Q Consensus       252 Vi~gv~ly~~  261 (317)
                      .+.|+.+||.
T Consensus       325 Li~Gi~lY~~  334 (372)
T KOG3912|consen  325 LIMGIILYNQ  334 (372)
T ss_pred             HHHHHHHHHH
Confidence            9999999986

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.85  E-value=8.9e-19  Score=163.15  Aligned_cols=234  Identities=12%  Similarity=0.082  Sum_probs=164.6

Q ss_pred             hhHHHH-HHHHHHHHHHHHHHH----hhhhhHHHHHHHHHH-HHHHHHHHHHH-hcCCHHHHHHHhhhHHHHHHHHHHHH
Q 021119            6 NLYRMV-LFYLQMPVISFILLQ----AARNNVLLAVPAFLY-AINNYLKFIMQ-LYFNPATVKMLSNLKVFVIALLLKII   78 (317)
Q Consensus         6 ~~~~~~-~~~~~~p~~~~~~~~----~~~~~~~~~~~all~-~~~n~l~f~al-~~l~~s~~~ll~~~~pi~talls~l~   78 (317)
                      ..+|+. +..+.+|+..+  .+    .+|+++.....+.+. ..++.+.+++. ++.+++..+++.++.|+++++++++ 
T Consensus        40 ~~~R~~~a~l~ll~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-  116 (292)
T PRK11272         40 AGVRFLIAGILLLAFLLL--RGHPLPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-  116 (292)
T ss_pred             HHHHHHHHHHHHHHHHHH--hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-
Confidence            457774 33444444322  22    234555566677664 57888899999 9999999999999999999999985 


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHH
Q 021119           79 MKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFL  158 (317)
Q Consensus        79 L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l  158 (317)
                      +|||++++||.|++++++|+.++..++..        +....|+++.+++++++|+++++.||..++   .+......++
T Consensus       117 ~~e~~~~~~~~~~~la~~Gv~ll~~~~~~--------~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~  185 (292)
T PRK11272        117 FGIRTRKLEWLGIAIGLAGIVLLNSGGNL--------SGNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEM  185 (292)
T ss_pred             hcccCchhHHHHHHHHHHhHHHHhcCccc--------ccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHH
Confidence            69999999999999999999888543211        112468899999999999999999996442   2333333333


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHHHHH
Q 021119          159 YGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSF-----FFKYADTILKKYSSTVATIFTGLAS  233 (317)
Q Consensus       159 ~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~ai~g~~v~~-----~~k~~~ai~~~~~~~l~~v~t~l~s  233 (317)
                       ..+.+...+..   ...++.    .....+...|..+++.++.++++++     ..|+.++.......++.|+++.+++
T Consensus       186 -~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~  257 (292)
T PRK11272        186 -LAAGVVLLIAS---LLSGER----LTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLG  257 (292)
T ss_pred             -HHHHHHHHHHH---HHcCCc----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence             23333222211   112111    0111234456666777776655544     3456667777777889999999999


Q ss_pred             HHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          234 AALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       234 ~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      ++++||++|..+++|+++++.|+++.+.
T Consensus       258 ~~~l~E~~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        258 TGLGGETLSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988765

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.85  E-value=6.8e-19  Score=164.23  Aligned_cols=243  Identities=12%  Similarity=0.060  Sum_probs=161.7

Q ss_pred             CcchhhHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHhc----CCHHHHHHHhhhHHHHHHHHH
Q 021119            2 PRTANLYRM-VLFYLQMPVISFILLQAARNNVLLAVPAF-LYAINNYLKFIMQLY----FNPATVKMLSNLKVFVIALLL   75 (317)
Q Consensus         2 ~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~al-l~~~~n~l~f~al~~----l~~s~~~ll~~~~pi~talls   75 (317)
                      |-+...+|+ ++..+..|+..+  .+.+|++++..+.+. .++.++.+.|.++++    .++++.+++.++.|+++++++
T Consensus        32 P~~~~~~R~~~a~l~l~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~  109 (295)
T PRK11689         32 PVGGAAMIYSVSGLLLLLTVGF--PRLRQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFA  109 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHccc--cccccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHH
Confidence            445567787 345555554311  111233344444444 466778888877754    688899999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCC-CC-CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHH
Q 021119           76 KIIMKRRFSIIQWEALALLLIGISVNQLRSLPEG-TS-ALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYH  153 (317)
Q Consensus        76 ~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~-~~-~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~  153 (317)
                      ++++|||++++||.+++++++|+.++..++...+ +. ..+......|+++++++++++|+++++.||..++.  ++.. 
T Consensus       110 ~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~--~~~~-  186 (295)
T PRK11689        110 VLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK--NGIT-  186 (295)
T ss_pred             HHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC--Cchh-
Confidence            9999999999999999999999998876532100 00 00111123588999999999999999999976543  2221 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHHHH
Q 021119          154 QNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSS-----FFFKYADTILKKYSSTVATIF  228 (317)
Q Consensus       154 ~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~ai~g~~v~-----~~~k~~~ai~~~~~~~l~~v~  228 (317)
                        ......+..+ .+.    ...++..    ...++...|..+++.++ ....+     +.+|+.++...+...++.|++
T Consensus       187 --~~~~~~~~~l-~~~----~~~~~~~----~~~~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~  254 (295)
T PRK11689        187 --LFFILTALAL-WIK----YFLSPQP----AMVFSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVL  254 (295)
T ss_pred             --HHHHHHHHHH-HHH----HHHhcCc----cccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHH
Confidence              1111122211 111    1122211    12234444544455443 23333     455677788888889999999


Q ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          229 TGLASAALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       229 t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      +.+++++++||+++..+++|+++|+.|+++...
T Consensus       255 a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        255 SAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            999999999999999999999999999876644

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.84  E-value=2.8e-18  Score=160.12  Aligned_cols=205  Identities=15%  Similarity=0.181  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021119           34 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL  113 (317)
Q Consensus        34 ~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~  113 (317)
                      ....+++...++.+.|+|++++|+++++++.++.|+++++++++++|||++++||.+++++++|+.++..++   ++   
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~---~~---  149 (296)
T PRK15430         76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF---GS---  149 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc---CC---
Confidence            344456678899999999999999999999999999999999999999999999999999999999886432   11   


Q ss_pred             CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHH
Q 021119          114 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATM  193 (317)
Q Consensus       114 ~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~  193 (317)
                       .  .    .+.+++++++|++.++.||..++. .......+.+...++.+.    ...  ..+...  ......+...+
T Consensus       150 -~--~----~~~l~aa~~~a~~~i~~r~~~~~~-~~~~~~~~~~~~~~~~~~----~~~--~~~~~~--~~~~~~~~~~~  213 (296)
T PRK15430        150 -L--P----IIALGLAFSFAFYGLVRKKIAVEA-QTGMLIETMWLLPVAAIY----LFA--IADSST--SHMGQNPMSLN  213 (296)
T ss_pred             -c--c----HHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHH----HHH--HccCCc--ccccCCcHHHH
Confidence             1  1    356778899999999988864322 112222222222222221    110  111110  00111111112


Q ss_pred             HHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119          194 LLICN----NAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  260 (317)
Q Consensus       194 ~~il~----~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~  260 (317)
                      ..++.    .++...+....+++.++...+...++.|+++.+++++++||+++..+++|+++|+.|+.+..
T Consensus       214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            22222    22333445566788888888999999999999999999999999999999999987755443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.80  E-value=6.9e-18  Score=156.30  Aligned_cols=213  Identities=12%  Similarity=0.111  Sum_probs=141.4

Q ss_pred             hhHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 021119           30 NNVLLAV-PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE  108 (317)
Q Consensus        30 ~~~~~~~-~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~  108 (317)
                      ++++..+ .++....++.+.++|+++.|++..+.+.++.|+++++++++++|||++++||+|+.+++.|+.++..++...
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~  140 (281)
T TIGR03340        61 TFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ  140 (281)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            3444444 455678999999999999999999999999999999999999999999999999999999999886543210


Q ss_pred             CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHhhcCCcccccccc
Q 021119          109 GTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFN-FLGIVITAMFKGPSSFDILQG  187 (317)
Q Consensus       109 ~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~-~~~l~~~~~~~g~~~~~~~~~  187 (317)
                              ....|..+.+++++++++++++.|+..++.   +......+...++.+.. .+........++..    .. 
T Consensus       141 --------~~~~g~~~~l~aal~~a~~~i~~k~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-  204 (281)
T TIGR03340       141 --------HRRKAYAWALAAALGTAIYSLSDKAAALGV---PAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS----MF-  204 (281)
T ss_pred             --------cchhHHHHHHHHHHHHHHhhhhccccccch---hcccccHHHHHHHHHHHHHHHHHHHHHHhccc----hh-
Confidence                    112366788999999999999888764332   11111111112222221 12111111111110    00 


Q ss_pred             cchHHHHHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Q 021119          188 HSKATMLLICNNAAQGILSSFF-----FKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQ  258 (317)
Q Consensus       188 ~~~~~~~~il~~ai~g~~v~~~-----~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~l  258 (317)
                      .....+..+.+.+......++.     +++.++.......++.|+++.++|++++||+++..+++|+++|+.|+++
T Consensus       205 ~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       205 PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            1111222333344333333433     3444444444456679999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.79  E-value=1.2e-16  Score=149.01  Aligned_cols=210  Identities=11%  Similarity=-0.053  Sum_probs=149.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021119           28 ARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP  107 (317)
Q Consensus        28 ~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~  107 (317)
                      +|+++.....++++...+.+.|++++|+|++.+.++.++.|+++++++.    ||.++.+  ++.++++|+.++..++..
T Consensus        68 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~--~~~i~~~Gv~li~~~~~~  141 (293)
T PRK10532         68 KEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFV--WVVLAVLGLWFLLPLGQD  141 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHH--HHHHHHHHHheeeecCCC
Confidence            4566777788888888999999999999999999999999999998873    5555544  566778999877543321


Q ss_pred             CCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccc
Q 021119          108 EGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQG  187 (317)
Q Consensus       108 ~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~  187 (317)
                      .    .+  .+..|.++.+++++++|++.++.||..+++  .+ .....+ .+++.+...+..    ..++..     ..
T Consensus       142 ~----~~--~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~--~~-~~~~~~-~~~~~~~l~~~~----~~~~~~-----~~  202 (293)
T PRK10532        142 V----SH--VDLTGAALALGAGACWAIYILSGQRAGAEH--GP-ATVAIG-SLIAALIFVPIG----ALQAGE-----AL  202 (293)
T ss_pred             c----cc--CChHHHHHHHHHHHHHHHHHHHHHHHhccC--Cc-hHHHHH-HHHHHHHHHHHH----HHccCc-----cc
Confidence            1    11  134699999999999999999999986654  22 222333 233333322221    122110     11


Q ss_pred             cchHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119          188 HSKATMLLICNNAAQGILSS-----FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  262 (317)
Q Consensus       188 ~~~~~~~~il~~ai~g~~v~-----~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~  262 (317)
                      ++...|...++.++.+.+.+     +.+++.++...+...++.|+++.+++++++||++++.+++|+++|+.|+..+...
T Consensus       203 ~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        203 WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            23334434445555555444     4556677888888899999999999999999999999999999999998887653

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.73  E-value=2.5e-16  Score=143.12  Aligned_cols=228  Identities=15%  Similarity=0.211  Sum_probs=183.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 021119           29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE  108 (317)
Q Consensus        29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~  108 (317)
                      .++++|...++...+...++|-|++|++-++..+.+++|.+.+++...++.|+|++.++++..++...|+.+....+..+
T Consensus        81 apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~  160 (327)
T KOG1581|consen   81 APLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD  160 (327)
T ss_pred             CchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999887765433


Q ss_pred             CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--cccccc
Q 021119          109 GTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPS--SFDILQ  186 (317)
Q Consensus       109 ~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~--~~~~~~  186 (317)
                      +.+..+.+.+.+|+.++...-++.++.+..++++.|+. ..+.+.+.....+++++.+...++    .+|.-  ...+..
T Consensus       161 s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~~li----~qg~~~~av~F~~  235 (327)
T KOG1581|consen  161 SSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGTYLI----LQGHLLPAVSFIK  235 (327)
T ss_pred             CccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHHhhh----cCCCCchHHHHHH
Confidence            22333445567899999999999999999999999976 555555555666788888776643    23321  112222


Q ss_pred             ccchHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          187 GHSKATM---LLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       187 ~~~~~~~---~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      .++...+   +.-.+.++++.++.+.+...++++-....+++-+++.++|.++||+++++.+++|..+|+.|+++=..
T Consensus       236 ~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  236 EHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEIL  313 (327)
T ss_pred             cChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHH
Confidence            3332222   23345677888888888888888888888899999999999999999999999999999999886554

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.72  E-value=6.7e-15  Score=134.80  Aligned_cols=212  Identities=17%  Similarity=0.172  Sum_probs=148.7

Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q 021119           32 VLLAVP-AFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLK-IIMKRRFSIIQWEALALLLIGISVNQLRSLPEG  109 (317)
Q Consensus        32 ~~~~~~-all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~-l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~  109 (317)
                      ++..+. +++....+.+.+.++++++++..+++.++.|++++++++ +++|||+++++|.++++.++|+.++..++..+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~  149 (292)
T COG0697          70 LLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG  149 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch
Confidence            344444 446779999999999999999999999999999999997 777999999999999999999999987664221


Q ss_pred             CCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccc
Q 021119          110 TSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHS  189 (317)
Q Consensus       110 ~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~  189 (317)
                      +     + ...|..+.+++++++|++.++.|++. +.  .+......+.. .+..    .+.........   +  ...+
T Consensus       150 ~-----~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~-~~~~----~~~~~~~~~~~---~--~~~~  210 (292)
T COG0697         150 I-----L-SLLGLLLALAAALLWALYTALVKRLS-RL--GPVTLALLLQL-LLAL----LLLLLFFLSGF---G--APIL  210 (292)
T ss_pred             h-----H-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC--ChHHHHHHHHH-HHHH----HHHHHHHhccc---c--ccCC
Confidence            1     0 34688999999999999999999987 32  22211110111 1111    11111111111   0  1222


Q ss_pred             hHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119          190 KATMLLICNNAAQGILSS-----FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  262 (317)
Q Consensus       190 ~~~~~~il~~ai~g~~v~-----~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~  262 (317)
                      ...|..+.+.++.+..++     +.++..++...+....+.++++.+++++++||.++..+++|.++++.|+.+.+..
T Consensus       211 ~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         211 SRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            333444444444443333     3445555556666667899999999999999999999999999999999998774

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.70  E-value=8.9e-19  Score=156.30  Aligned_cols=226  Identities=13%  Similarity=0.118  Sum_probs=160.0

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 021119           23 ILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ  102 (317)
Q Consensus        23 ~~~~~~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~  102 (317)
                      .++..+.+.+++.+.+++.+..-.+.||+++|++.+.+.++..+.|.+|.+|+|.+|||+.++..-++..+.+.||+++.
T Consensus        89 ~v~gp~g~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen   89 PVIGPEGKRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV  168 (346)
T ss_pred             eeecCCCcEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence            33455555667888899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCCCC-----CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021119          103 LRSLPEGTSA-----LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFK  177 (317)
Q Consensus       103 ~~~~~~~~~~-----~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~  177 (317)
                      .|+...++..     .+..-...|....+.++++.|-..+..|++.|+-  +.+ +...++...+.+.++++...   . 
T Consensus       169 RPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~--h~~-msvsyf~~i~lV~s~I~~~~---i-  241 (346)
T KOG4510|consen  169 RPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA--HAI-MSVSYFSLITLVVSLIGCAS---I-  241 (346)
T ss_pred             cCCcccCCCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc--cEE-EEehHHHHHHHHHHHHHHhh---c-
Confidence            8865322211     1111123566777888888888888899987864  111 11123333444444433221   1 


Q ss_pred             CCcccccccccchHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 021119          178 GPSSFDILQGHSKATMLLICNNA----AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVF  253 (317)
Q Consensus       178 g~~~~~~~~~~~~~~~~~il~~a----i~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi  253 (317)
                      |.    ....+.+..|.+.++.+    ++++.+...++...+...+.+.+..++++.++.+++|||.||++.+.|+++|+
T Consensus       242 g~----~~lP~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vv  317 (346)
T KOG4510|consen  242 GA----VQLPHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVV  317 (346)
T ss_pred             cc----eecCccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeee
Confidence            11    00112222222222222    34455666666666666788899999999999999999999999999999999


Q ss_pred             HHHHHh
Q 021119          254 ISMHQF  259 (317)
Q Consensus       254 ~gv~ly  259 (317)
                      .+....
T Consensus       318 sS~v~~  323 (346)
T KOG4510|consen  318 SSTVWV  323 (346)
T ss_pred             hhHHHH
Confidence            885543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.65  E-value=2.3e-15  Score=132.35  Aligned_cols=229  Identities=14%  Similarity=0.103  Sum_probs=171.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 021119           29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE  108 (317)
Q Consensus        29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~  108 (317)
                      .+.+.|+.-++-|.++....+.|+++.|-++..+-++++|+.++++..++.+++++++++.++++.++||++...+...-
T Consensus        83 t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv  162 (337)
T KOG1580|consen   83 TPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKV  162 (337)
T ss_pred             CcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccccc
Confidence            44677999999999999999999999999999999999999999999999999999999999999999999998875321


Q ss_pred             CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc--cccc
Q 021119          109 GTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSF--DILQ  186 (317)
Q Consensus       109 ~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~--~~~~  186 (317)
                      ++.  ..+....|.++.+++-.+.++.+..+|++-+.+...+-. ....+.+++++....+++    +.|+.+.  .+.+
T Consensus       163 ~g~--e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~-MM~~~NlwStL~Lg~g~l----fTGElweF~yF~~  235 (337)
T KOG1580|consen  163 GGA--EDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTS-MMFYTNLWSTLYLGAGLL----FTGELWEFFYFVQ  235 (337)
T ss_pred             CCC--cccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchh-hHHHHHHHHHHHhhhhhe----ehhhHHHHHHHHH
Confidence            110  001123588999999999999999999986665222221 122334566665444443    4444321  1222


Q ss_pred             ccchHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCC
Q 021119          187 GHSKATM---LLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  263 (317)
Q Consensus       187 ~~~~~~~---~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~  263 (317)
                      .++...|   +..+...+|++++.....+.+..+.++.++.+..|+.+.|+++|+++++..+|+|..+|+.+...-....
T Consensus       236 RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G  315 (337)
T KOG1580|consen  236 RHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG  315 (337)
T ss_pred             hccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence            3332222   2224455677777777778888888899999999999999999999999999999999999987654433


Q ss_pred             C
Q 021119          264 S  264 (317)
Q Consensus       264 ~  264 (317)
                      +
T Consensus       316 K  316 (337)
T KOG1580|consen  316 K  316 (337)
T ss_pred             C
Confidence            3

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.62  E-value=1.9e-16  Score=147.79  Aligned_cols=228  Identities=14%  Similarity=0.198  Sum_probs=166.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q 021119           30 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEG  109 (317)
Q Consensus        30 ~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~  109 (317)
                      ++...+..|+.+++...+.+.++++.|.+.+|+++.+.|+++.++++++.+|++++..+++++....||.+....+.   
T Consensus        82 ~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~---  158 (316)
T KOG1441|consen   82 PLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL---  158 (316)
T ss_pred             chHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc---
Confidence            45567888999999999999999999999999999999999999999999999999999999999999988876321   


Q ss_pred             CCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHH--HhhcCCcccc-ccc
Q 021119          110 TSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVIT--AMFKGPSSFD-ILQ  186 (317)
Q Consensus       110 ~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~--~~~~g~~~~~-~~~  186 (317)
                            ..+..|....+.+.+..++.+++.+++++++ +.+..-.  ++.-+-..+++..++..  ...||....+ ...
T Consensus       159 ------~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~-~~~~~~~--~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~  229 (316)
T KOG1441|consen  159 ------SFNLFGFISAMISNLAFALRNILSKKLLTSK-GESLNSM--NLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTA  229 (316)
T ss_pred             ------cccHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccccCch--HHHHHhhhHHHHHHhcchHhhhcccceeeeecc
Confidence                  2356799999999999999999999999643 1222222  22223333333332211  1233332100 112


Q ss_pred             ccchHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCC
Q 021119          187 GHSKATMLLICNN---AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  263 (317)
Q Consensus       187 ~~~~~~~~~il~~---ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~  263 (317)
                      .|+...+..++..   -..+.....++.+.++++-.++.....++..+.|+++|++++|+...+|.++.+.|+++|++.+
T Consensus       230 ~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k  309 (316)
T KOG1441|consen  230 PWFVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAK  309 (316)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence            3443333222222   1223445556677788888888888888999999999999999999999999999999999965


Q ss_pred             CcCCCC
Q 021119          264 SKVKDE  269 (317)
Q Consensus       264 ~~~~~~  269 (317)
                      .++|++
T Consensus       310 ~~~~~~  315 (316)
T KOG1441|consen  310 LKEKKG  315 (316)
T ss_pred             hhhhcc
Confidence            555543

>TIGR00688 rarD rarD protein

Probab=99.60  E-value=6.6e-13  Score=121.16  Aligned_cols=178  Identities=13%  Similarity=0.063  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021119           34 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL  113 (317)
Q Consensus        34 ~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~  113 (317)
                      ....+++...++.+.++|++++|+++++++.++.|+++++++++++|||++++||++++++++|++++..++   ++   
T Consensus        73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~---~~---  146 (256)
T TIGR00688        73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK---GS---  146 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc---CC---
Confidence            566677888999999999999999999999999999999999999999999999999999999999876432   11   


Q ss_pred             CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccch-HH
Q 021119          114 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSK-AT  192 (317)
Q Consensus       114 ~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~-~~  192 (317)
                       .  .    .+.+++++++|++.++.|+..+++   ..  +..    .+.+...+.........+....   ...+. ..
T Consensus       147 -~--~----~~~l~aa~~~a~~~i~~~~~~~~~---~~--~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  207 (256)
T TIGR00688       147 -L--P----WEALVLAFSFTAYGLIRKALKNTD---LA--GFC----LETLSLMPVAIYYLLQTDFATV---QQTNPFPI  207 (256)
T ss_pred             -c--h----HHHHHHHHHHHHHHHHHhhcCCCC---cc--hHH----HHHHHHHHHHHHHHHHhccCcc---cccCchhH
Confidence             1  1    346788999999999998864321   11  111    1111122211111111111100   01111 13


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 021119          193 MLLICNNAA----QGILSSFFFKYADTILKKYSSTVATIFTGLASAAL  236 (317)
Q Consensus       193 ~~~il~~ai----~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~ll  236 (317)
                      |..++..++    +..+....+|+.++...+...++.|+++.++++++
T Consensus       208 ~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       208 WLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333    33344556688888899999999999999998764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.56  E-value=1.7e-15  Score=135.95  Aligned_cols=235  Identities=14%  Similarity=0.145  Sum_probs=164.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021119           29 RNNVLLAVPAFLYAINNYLKFIMQLY-FNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP  107 (317)
Q Consensus        29 ~~~~~~~~~all~~~~n~l~f~al~~-l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~  107 (317)
                      -+.+.|++.-.++++.|...++++++ +|.+...+.++..++.+++++++++|+|++.+|+.++++.++|+++....+..
T Consensus        62 iplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~  141 (330)
T KOG1583|consen   62 IPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSK  141 (330)
T ss_pred             CchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCc
Confidence            34456888888888999999999997 89999999999999999999999999999999999999999999988765432


Q ss_pred             CCCC----------CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH---
Q 021119          108 EGTS----------ALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITA---  174 (317)
Q Consensus       108 ~~~~----------~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~---  174 (317)
                      +...          ......-..|+.+...+.+.+|.-++|+|..+|++..+  |..+.   +|.-.+++|+++...   
T Consensus       142 d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh--~~Eal---FytH~LsLP~Flf~~~di  216 (330)
T KOG1583|consen  142 DGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH--WKEAL---FYTHFLSLPLFLFMGDDI  216 (330)
T ss_pred             chhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHH---HHHHHhccchHHHhcchH
Confidence            2111          01111123588888999999999999999999998333  33333   356777777665321   


Q ss_pred             ------hhcCCc-ccccccccchHHHHHHHHHHHHH-HHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHcCCcchH
Q 021119          175 ------MFKGPS-SFDILQGHSKATMLLICNNAAQG-ILSSFFFKY---ADTILKKYSSTVATIFTGLASAALFGHTLTM  243 (317)
Q Consensus       175 ------~~~g~~-~~~~~~~~~~~~~~~il~~ai~g-~~v~~~~k~---~~ai~~~~~~~l~~v~t~l~s~llfge~lt~  243 (317)
                            .+.+++ ..+.+...-+..|..++.+.+.+ .++..++-.   .++.+.....+++..++.++|+..|.+++|+
T Consensus       217 v~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~  296 (330)
T KOG1583|consen  217 VSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTP  296 (330)
T ss_pred             HHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCH
Confidence                  111111 00111111233444444443333 233322211   1222333344568899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcCCC
Q 021119          244 NFILGISIVFISMHQFFSPLSKVKD  268 (317)
Q Consensus       244 ~~~lG~~lVi~gv~ly~~~~~~~~~  268 (317)
                      +.++|+++|+.|..+|....+++|.
T Consensus       297 ~h~lGa~lVF~Gt~~fa~~~~~~~~  321 (330)
T KOG1583|consen  297 WHWLGAALVFFGTLLFANVWNHPKA  321 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCccc
Confidence            9999999999999999987777773

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.54  E-value=6.6e-13  Score=123.99  Aligned_cols=229  Identities=16%  Similarity=0.220  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021119           34 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL  113 (317)
Q Consensus        34 ~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~  113 (317)
                      -+..+.+-+++|+....|+.+++.+...++++++=+||..++.++.+||+++.|.+++++.+.|++++...+..+.+...
T Consensus       162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~  241 (416)
T KOG2765|consen  162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLP  241 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCC
Confidence            34446677899999999999999999999999999999999999999999999999999999999999877653322111


Q ss_pred             CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH----HHHHHHhhcCCcccccccccc
Q 021119          114 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFL----GIVITAMFKGPSSFDILQGHS  189 (317)
Q Consensus       114 ~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~----~l~~~~~~~g~~~~~~~~~~~  189 (317)
                      . .....|.++.+++++..|.+.+..||-..++ +...-++ .++++.| +++++    .+++-..+ +.+.   +.-++
T Consensus       242 a-~~~llG~llaL~sA~~YavY~vllk~~~~~e-g~rvdi~-lffGfvG-LfnllllwP~l~iL~~~-~~e~---F~lP~  313 (416)
T KOG2765|consen  242 A-SRPLLGNLLALLSALLYAVYTVLLKRKIGDE-GERVDIQ-LFFGFVG-LFNLLLLWPPLIILDFF-GEER---FELPS  313 (416)
T ss_pred             c-cchhHHHHHHHHHHHHHHHHHHHHHhhcccc-cccccHH-HHHHHHH-HHHHHHHhHHHHHHHHh-ccCc---ccCCC
Confidence            1 1236799999999999999999988865554 1122222 2334344 23333    22222223 3322   22222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCC
Q 021119          190 KATMLLICNNAAQGILSSFFFKY-----ADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS  264 (317)
Q Consensus       190 ~~~~~~il~~ai~g~~v~~~~k~-----~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~  264 (317)
                      ......++..++.|.+++=++|.     .++.+...+.++++.++.+...++=|.++|+.+++|.+.|+.|-+..|.+.+
T Consensus       314 ~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  314 STQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             CceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence            22222334444666666644443     2444555556678899999999999999999999999999999999888765


Q ss_pred             cCCCCC
Q 021119          265 KVKDEP  270 (317)
Q Consensus       265 ~~~~~~  270 (317)
                      -.+++|
T Consensus       394 ~~~~~~  399 (416)
T KOG2765|consen  394 NSKKDP  399 (416)
T ss_pred             cccccc
Confidence            555554

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.52  E-value=1.3e-15  Score=135.46  Aligned_cols=234  Identities=15%  Similarity=0.195  Sum_probs=166.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 021119           31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGT  110 (317)
Q Consensus        31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~  110 (317)
                      |..|.+.|+.+.-.|++...|.||++....+++-+-.++.+.+++|++||.|+.+.|..|++.+..|++++..++.-.++
T Consensus        78 ~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd  157 (336)
T KOG2766|consen   78 WRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGD  157 (336)
T ss_pred             HHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecccc
Confidence            44589999999999999999999999999999999999999999999999999999999999999999988877643333


Q ss_pred             CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccch
Q 021119          111 SALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSK  190 (317)
Q Consensus       111 ~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~  190 (317)
                      ...+. ....|+.+++.++.+.|.+++.+|.+.|+.   +......++++||.+++.+-+.    ++....  ...+|++
T Consensus       158 ~aggs-np~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgLfGaIIsaIQ~i----~~~~~~--~tl~w~~  227 (336)
T KOG2766|consen  158 RAGGS-NPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGLFGAIISAIQFI----FERHHV--STLHWDS  227 (336)
T ss_pred             ccCCC-CCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHh----hhccce--eeEeehH
Confidence            22222 234688999999999999999999999975   3344455788899998877532    332210  0113332


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCCcCC
Q 021119          191 ATMLL---ICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVK  267 (317)
Q Consensus       191 ~~~~~---il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~  267 (317)
                      .....   .+.+-+.-+....++|..++..-+.....+-.++.++  ..||-+.+|..++.+..+..|..+|.   -|.|
T Consensus       228 ~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs---~re~  302 (336)
T KOG2766|consen  228 AIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYS---TREK  302 (336)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEee---cccc
Confidence            21111   1111122223333444444333344444455666665  67899999999999999999999994   3666


Q ss_pred             CCCCCcCccccC
Q 021119          268 DEPKNISLESVD  279 (317)
Q Consensus       268 ~~~~~~~~~~~~  279 (317)
                      ||++...=|.+|
T Consensus       303 ~~~e~r~~~v~~  314 (336)
T KOG2766|consen  303 DEEELRKGQVVS  314 (336)
T ss_pred             CcHhhccCcccc
Confidence            666554444444

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.40  E-value=1.3e-10  Score=108.29  Aligned_cols=204  Identities=16%  Similarity=0.084  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHhh-hHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHhhcCCCCCCCCC
Q 021119           38 AFLYAINNYLKFIMQLYFNPATVKMLSN-LKVFVIALLLKIIMKRRFSIIQ----WEALALLLIGISVNQLRSLPEGTSA  112 (317)
Q Consensus        38 all~~~~n~l~f~al~~l~~s~~~ll~~-~~pi~talls~l~L~erls~~q----~lal~l~~~Gv~iv~~~~~~~~~~~  112 (317)
                      +++....|.+++.+.+++..+.+..+.+ +.+++.++++.+++|||.++++    ++|+++.++|+.++...+..+. ..
T Consensus        66 G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~-~~  144 (290)
T TIGR00776        66 GAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA-GI  144 (290)
T ss_pred             HHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc-cc
Confidence            4457799999999999999999999999 9999999999999999999999    9999999999988865542111 00


Q ss_pred             CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHH---HHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccc
Q 021119          113 LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYH---QNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHS  189 (317)
Q Consensus       113 ~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~---~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~  189 (317)
                      .+.+...-|+.+.++++++.+++.+..|+. + +  ++...   +..-+.+.+++++.+       +...  .+ +  .+
T Consensus       145 ~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~--~~~~~~~~~~~g~~~~~~~~~~~-------~~~~--~~-~--~~  208 (290)
T TIGR00776       145 KSEFNFKKGILLLLMSTIGYLVYVVVAKAF-G-V--DGLSVLLPQAIGMVIGGIIFNLG-------HILA--KP-L--KK  208 (290)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHc-C-C--CcceehhHHHHHHHHHHHHHHHH-------Hhcc--cc-h--HH
Confidence            000111359999999999999999999875 2 2  23222   211122223222211       1000  00 0  11


Q ss_pred             hHHHHHHHHHHHHHHHHHH-----HHH-HhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHH----HHHHHHHHHHHHh
Q 021119          190 KATMLLICNNAAQGILSSF-----FFK-YADTILKKYSSTVATIFTGLASAALFGHTLTMNFI----LGISIVFISMHQF  259 (317)
Q Consensus       190 ~~~~~~il~~ai~g~~v~~-----~~k-~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~----lG~~lVi~gv~ly  259 (317)
                      ...+..++ .++. ..+++     ..+ +.++......++..++.+++.+++++||..+..++    +|.++++.|+.+-
T Consensus       209 ~~~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~  286 (290)
T TIGR00776       209 YAILLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANIL  286 (290)
T ss_pred             HHHHHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHH
Confidence            12222222 2222 22222     223 55566667777889999999999999999999999    9999999998765


Q ss_pred             c
Q 021119          260 F  260 (317)
Q Consensus       260 ~  260 (317)
                      .
T Consensus       287 ~  287 (290)
T TIGR00776       287 G  287 (290)
T ss_pred             h
Confidence            3

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.40  E-value=1.6e-10  Score=105.26  Aligned_cols=208  Identities=17%  Similarity=0.216  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 021119           32 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTS  111 (317)
Q Consensus        32 ~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~  111 (317)
                      ..+.+-+++-..+-.++-+|..+-..-.+++=...+|++..++.++++|||+++.||+|+.++.+||........     
T Consensus        73 ~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g-----  147 (293)
T COG2962          73 LMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG-----  147 (293)
T ss_pred             HHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-----
Confidence            334555666778888888899999999999999999999999999999999999999999999999988765421     


Q ss_pred             CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchH
Q 021119          112 ALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKA  191 (317)
Q Consensus       112 ~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~  191 (317)
                        +.|  +..    +.-++..++++.. ||.+|-..-.+.-.....+.    +..+..+.   ..+...  ++....+..
T Consensus       148 --~lp--wva----l~la~sf~~Ygl~-RK~~~v~a~~g~~lE~l~l~----p~al~yl~---~l~~~~--~~~~~~~~~  209 (293)
T COG2962         148 --SLP--WVA----LALALSFGLYGLL-RKKLKVDALTGLTLETLLLL----PVALIYLL---FLADSG--QFLQQNANS  209 (293)
T ss_pred             --CCc--HHH----HHHHHHHHHHHHH-HHhcCCchHHhHHHHHHHHh----HHHHHHHH---HHhcCc--hhhhcCCch
Confidence              233  222    2234556777775 55556432222222222221    11111111   111111  111211222


Q ss_pred             HHHHHHHHHH-HHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119          192 TMLLICNNAA-QGILS---SFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  262 (317)
Q Consensus       192 ~~~~il~~ai-~g~~v---~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~  262 (317)
                      .+..+...+. .+.-.   +..-|+.+=.+-++.+++.|..-.+++++++||+++..+.+..+.+-.|+.+|...
T Consensus       210 ~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d  284 (293)
T COG2962         210 LWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID  284 (293)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            2332222222 22111   12224444456678899999999999999999999999999999999999888764

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.34  E-value=1.7e-11  Score=110.20  Aligned_cols=221  Identities=17%  Similarity=0.142  Sum_probs=158.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 021119           31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGT  110 (317)
Q Consensus        31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~  110 (317)
                      |+-|.+.|.+-.....+..-++.|++-++-.+.+++|.+.+++-+.++=|+|+....+.+..+..+|+......+...  
T Consensus       106 ~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~--  183 (367)
T KOG1582|consen  106 WRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT--  183 (367)
T ss_pred             hhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc--
Confidence            556999999999999999999999999999999999999999999999999999999999999999999998876421  


Q ss_pred             CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--cccccccc
Q 021119          111 SALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPS--SFDILQGH  188 (317)
Q Consensus       111 ~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~--~~~~~~~~  188 (317)
                       ..++  +..|..+.-++-++.|.-+-.+||.+|..+..+.. .-.+-+..|..+.+..+.+    .|+.  ...+...+
T Consensus       184 -sPNF--~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~E-mvfySy~iG~vflf~~mvl----Tge~f~a~~fcaeh  255 (367)
T KOG1582|consen  184 -SPNF--NLIGVMMISGALLADAVIGNVQEKAMKMNPASSSE-MVFYSYGIGFVFLFAPMVL----TGELFSAWTFCAEH  255 (367)
T ss_pred             -CCCc--ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcce-EEEeeecccHHHHHHHHHh----cccchhhhHHHHhC
Confidence             1233  45687777777777788888899999986433321 1112233344443333322    2221  11122222


Q ss_pred             chHHHHHHHHH---HHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          189 SKATMLLICNN---AAQG-ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       189 ~~~~~~~il~~---ai~g-~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      ++.+....+..   +..| ..+-..+|..++.+.+..++.+.-++.++|+++|..|+|....-|..+|+.|+++-..
T Consensus       256 p~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~y  332 (367)
T KOG1582|consen  256 PVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMY  332 (367)
T ss_pred             cHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcc
Confidence            33233222222   2222 2233345666777777778888899999999999999999999999999999998555

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.30  E-value=3.2e-11  Score=110.09  Aligned_cols=215  Identities=16%  Similarity=0.195  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021119           34 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL  113 (317)
Q Consensus        34 ~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~  113 (317)
                      .+.-|+..+..-.+.+++++|++.+.|+|.++..++|+.+|+..|-=||.++.=..-+++..+|+.+...++.+      
T Consensus        87 ~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq------  160 (349)
T KOG1443|consen   87 LAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ------  160 (349)
T ss_pred             hhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc------
Confidence            34557778899999999999999999999999999999999999988999998888888888999999877642      


Q ss_pred             CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc---ccccccc
Q 021119          114 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQY--DTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS---FDILQGH  188 (317)
Q Consensus       114 ~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~--~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~---~~~~~~~  188 (317)
                         .+..|..+++.+++++++...+.++++++++  ...+.....++.-   .+....++....+||...   ...+...
T Consensus       161 ---f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p---~M~~~Ll~~~l~fEG~~~~~~s~~f~~~  234 (349)
T KOG1443|consen  161 ---FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQP---WMSIGLLPLSLLFEGLHLITSSSIFRFQ  234 (349)
T ss_pred             ---eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhh---HHHHHHHHHHHHHcccccchhhhHHHhc
Confidence               2456899999999999999999999999762  1111111111110   111111223345777621   1122222


Q ss_pred             ch-HHHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 021119          189 SK-ATMLLICNNAAQGILSSFFFKY--------ADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF  259 (317)
Q Consensus       189 ~~-~~~~~il~~ai~g~~v~~~~k~--------~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly  259 (317)
                      +. ..+-.+...+.+|.. ++.+-.        .+.++-+.+.-..-+.+.+++..+.+++++..-++|..+.+.|+..|
T Consensus       235 d~~~~~rv~g~i~l~g~l-aF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  235 DTGLILRVIGLISLGGLL-AFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             CccHHHHHHHHHHHHHHH-HHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            21 122233333444432 222211        23333344444566788899999999999999999999999999999


Q ss_pred             cC
Q 021119          260 FS  261 (317)
Q Consensus       260 ~~  261 (317)
                      ..
T Consensus       314 ~~  315 (349)
T KOG1443|consen  314 RN  315 (349)
T ss_pred             cc
Confidence            43

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.28  E-value=2.6e-09  Score=95.39  Aligned_cols=230  Identities=15%  Similarity=0.060  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCH
Q 021119            8 YRMVLFYLQMPVISFILLQAA--RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSI   85 (317)
Q Consensus         8 ~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~   85 (317)
                      +|...=+.++-.++|+-++++  +|+...+..+..-..-|.++|.+++.+|.+++..+-++.|+..++++    .||..-
T Consensus        46 lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~d  121 (292)
T COG5006          46 LRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLRD  121 (292)
T ss_pred             HHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccchhh
Confidence            344333333444455555554  45666788888888999999999999999999999999999888654    566666


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Q 021119           86 IQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIF  165 (317)
Q Consensus        86 ~q~lal~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~  165 (317)
                      .-|+++  .+.|+.+..-.+..      ..+.+..|..+.+.+..||+.|-+..+|.-+.+  +..--...-+ ..+.++
T Consensus       122 ~vwvaL--AvlGi~lL~p~~~~------~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm-~vAavi  190 (292)
T COG5006         122 FVWVAL--AVLGIWLLLPLGQS------VWSLDPVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGM-LVAALI  190 (292)
T ss_pred             HHHHHH--HHHHHHhheeccCC------cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHH-HHHHHH
Confidence            666555  55666555432221      123456799999999999999999999987543  2221111221 123333


Q ss_pred             HHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 021119          166 NFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSF-----FFKYADTILKKYSSTVATIFTGLASAALFGHT  240 (317)
Q Consensus       166 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~ai~g~~v~~-----~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~  240 (317)
                      .+|.   .....|+    .+.  ++.....-+..++.++.+-|     .+++...-.-....++.|.++.+.|++++||.
T Consensus       191 v~Pi---g~~~ag~----~l~--~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~  261 (292)
T COG5006         191 VLPI---GAAQAGP----ALF--SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGET  261 (292)
T ss_pred             Hhhh---hhhhcch----hhc--ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence            2321   1111111    111  22222222333444444444     33445555556666789999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHhcC
Q 021119          241 LTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       241 lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      +|+.+++|+..|+.++.-...
T Consensus       262 ls~~qwlaI~~ViaAsaG~~l  282 (292)
T COG5006         262 LTLIQWLAIAAVIAASAGSTL  282 (292)
T ss_pred             CCHHHHHHHHHHHHHHhcccc
Confidence            999999999999998775554

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=4.8e-13  Score=120.17  Aligned_cols=228  Identities=10%  Similarity=0.127  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 021119           36 VPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGL  115 (317)
Q Consensus        36 ~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~~~  115 (317)
                      ..++.+.+.-....+.++|.+.+.|++=+++..+|+.++++.+||+|-+..-..++.+.+.|--+-.   ..|+   ...
T Consensus       107 plsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv---dqE~---~~~  180 (347)
T KOG1442|consen  107 PLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV---DQEG---STG  180 (347)
T ss_pred             chhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheecc---cccc---ccC
Confidence            3345554444444558999999999999999999999999999999999887777766666643221   1221   123


Q ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHH
Q 021119          116 PVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLL  195 (317)
Q Consensus       116 ~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~  195 (317)
                      +.++.|.++++.+.++-|+-++|.||.+..- ++.+|..+++...++.++.+|.+.+..-++  +..++-+.+.++.|.+
T Consensus       181 ~ls~~GvifGVlaSl~vAlnaiytkk~l~~v-~~~iw~lt~ynnv~a~lLflpll~lnge~~--~v~~~~~l~a~~Fw~~  257 (347)
T KOG1442|consen  181 TLSWIGVIFGVLASLAVALNAIYTKKVLPPV-GDCIWRLTAYNNVNALLLFLPLLILNGEFQ--AVVGFPHLPAIKFWIL  257 (347)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHhhheecccc-cCeehhhHHHHHHHHHHHHHHHHHHcchHH--HHcCcccchHHHHHHH
Confidence            4567899999999999999999999876654 567888888888888888777665322111  1112223445667877


Q ss_pred             HHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCCcCCCCCC
Q 021119          196 ICNNAAQGILSSFFF----KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPK  271 (317)
Q Consensus       196 il~~ai~g~~v~~~~----k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~~~~~  271 (317)
                      +...+++|..+.++.    |-.++++.++..+.+-..-+++++.+.+|..+..-|-|-.+|+.|..+|.+.+++++++++
T Consensus       258 mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~  337 (347)
T KOG1442|consen  258 MTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS  337 (347)
T ss_pred             HHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence            777888887777654    5567777777777777888888999999999999999999999999999987777666544


Q ss_pred             C
Q 021119          272 N  272 (317)
Q Consensus       272 ~  272 (317)
                      .
T Consensus       338 ~  338 (347)
T KOG1442|consen  338 A  338 (347)
T ss_pred             c
Confidence            3

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=2.1e-10  Score=105.72  Aligned_cols=230  Identities=13%  Similarity=0.172  Sum_probs=156.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021119           28 ARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP  107 (317)
Q Consensus        28 ~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~  107 (317)
                      ++..+++..++++|.+.-.....+++|+|.+.+.+++...|+++++.-.+++|.|.++.-|.++....+|......++..
T Consensus        74 ~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s  153 (314)
T KOG1444|consen   74 LRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS  153 (314)
T ss_pred             hHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce
Confidence            35567888899999999888899999999999999999999999999999999999999999999999999888765532


Q ss_pred             CCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-c-ccccc
Q 021119          108 EGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGP-S-SFDIL  185 (317)
Q Consensus       108 ~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~-~-~~~~~  185 (317)
                               .+..|+.+++..++..+...++.||..+..+ .+-+    .+..+--+++++.+.+....-|+ . ...-+
T Consensus       154 ---------f~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~-l~~~----~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~  219 (314)
T KOG1444|consen  154 ---------FNLRGYSWALANCLTTAAFVVYVKKSVDSAN-LNKF----GLVFYNNLLSLPPLLILSFITGELDALSLNF  219 (314)
T ss_pred             ---------ecchhHHHHHHHHHHHHHHHHHHHHhhcccc-ccce----eEEeehhHHHHHHHHHHHHHhcchHHHHhhc
Confidence                     1234899999999999999999999877541 1111    11223333444333322222222 1 00001


Q ss_pred             cccc-hHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119          186 QGHS-KATMLLICNNAAQGILSSFF----FKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  260 (317)
Q Consensus       186 ~~~~-~~~~~~il~~ai~g~~v~~~----~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~  260 (317)
                      ..+. ...+..+....+.|..+.|.    .+..++.+-..........+.+.+.+.+|++.++.-++|..+-+.|-.+|+
T Consensus       220 ~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  220 DNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYS  299 (314)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHh
Confidence            1122 23444445455555544443    233344443444433445566677777789999999999999999999998


Q ss_pred             CCCCcCCCCCC
Q 021119          261 SPLSKVKDEPK  271 (317)
Q Consensus       261 ~~~~~~~~~~~  271 (317)
                      ...+++|+.|+
T Consensus       300 ~~~~~~k~~~~  310 (314)
T KOG1444|consen  300 YATFRKKKQPP  310 (314)
T ss_pred             hhhhhhccCCC
Confidence            85555554433

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.07  E-value=4e-09  Score=84.55  Aligned_cols=76  Identities=28%  Similarity=0.341  Sum_probs=67.1

Q ss_pred             hhHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 021119           30 NNVLLAVPAFLYA-INNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSL  106 (317)
Q Consensus        30 ~~~~~~~~all~~-~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~  106 (317)
                      ++.+....+++.. .++.+.++|+++.| +...++.++.|+++++++++++|||+++++|.+++++++|++++..++.
T Consensus        33 ~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   33 PWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            3445555577664 89999999999999 5888999999999999999999999999999999999999999987664

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.00  E-value=1.8e-08  Score=84.31  Aligned_cols=138  Identities=16%  Similarity=0.190  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc----CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc----ccc-cc--c
Q 021119          121 AYLYTLIFVTVPSLASVFNEYALKSQ----YDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD----ILQ-GH--S  189 (317)
Q Consensus       121 G~~l~l~a~~~sal~~V~~ekl~k~~----~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~----~~~-~~--~  189 (317)
                      |..+++.++++.|+..++.|+.+|+.    ...+......+....+.++.++..+   ..|+.....    ... ..  +
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~---~~e~~~~~~~~~~~~~~~~~~~   77 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAF---LLEGPQLSSFFSEIFGEELSSD   77 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhHHHHhhhhhhcch
Confidence            56788999999999999999999983    2333333333445555555554433   234432110    111 00  2


Q ss_pred             hHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          190 KATMLLICNNAAQ----GILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       190 ~~~~~~il~~ai~----g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      ...+..++..++.    +.....++++.++++..+...++.++..+.|+++|||++|..+++|.++.+.|+++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            2233333333332    34445677899999999999999999999999999999999999999999999999975

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.80  E-value=1.2e-07  Score=82.13  Aligned_cols=212  Identities=12%  Similarity=0.076  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCh
Q 021119           38 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPV  117 (317)
Q Consensus        38 all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~~~~~  117 (317)
                      +++.+..|+++..+++.++++.++.+..++-.|+-++++..||.|+...+.++.++...|++++...+...       ..
T Consensus        60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~-------a~  132 (290)
T KOG4314|consen   60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH-------AD  132 (290)
T ss_pred             EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh-------hh
Confidence            66778999999999999999999999999999999999999999999999999999999999997655311       12


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhcC--CchhHHHHHHHHHHHHHHHH-HHHHHHHhhcCCccccccc--ccchHH
Q 021119          118 ATGAYLYTLIFVTVPSLASVFNEYALKSQY--DTSIYHQNLFLYGYGAIFNF-LGIVITAMFKGPSSFDILQ--GHSKAT  192 (317)
Q Consensus       118 ~~~G~~l~l~a~~~sal~~V~~ekl~k~~~--~~~~~~~~~~l~~~g~i~~~-~~l~~~~~~~g~~~~~~~~--~~~~~~  192 (317)
                      .+.|+.+.+.++..+|++.|..|....+.+  +.+..+  ..+.++-.++.. +.+++  .+.|.++.+.+.  .|....
T Consensus       133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~Fm--S~LGF~NL~~~~~~~lIL--~~T~VE~~qsFA~~PWG~l~  208 (290)
T KOG4314|consen  133 EIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFM--SCLGFFNLCFISFPALIL--AFTGVEHLQSFAAAPWGCLC  208 (290)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHH--HHHHHHHHHHHhhhHHHH--HHhchHHHHHHhhCCchhhh
Confidence            467999999999999999999888765431  222221  122333333322 22221  233332211111  111110


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          193 MLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       193 ~~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      -.+.++.+ ++..+-+-......+.-+.....++.-.+....++=+-..+..++.|.+++.+|-.+.-.
T Consensus       209 G~A~L~lA-FN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiii  276 (290)
T KOG4314|consen  209 GAAGLSLA-FNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIII  276 (290)
T ss_pred             hHHHHHHH-HhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence            01111111 111111111112223333333344455666676666667888899999999999776655

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.80  E-value=9.4e-08  Score=84.14  Aligned_cols=231  Identities=12%  Similarity=0.139  Sum_probs=151.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021119           28 ARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP  107 (317)
Q Consensus        28 ~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~  107 (317)
                      .++.+++..++++-..--+-.--+++|++.+.+.+.+++.++.+|..-.+++|.|++.....+-++.++.-.+...++.+
T Consensus        65 ~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q  144 (309)
T COG5070          65 LTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQ  144 (309)
T ss_pred             hhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhh
Confidence            35666777788776666566667899999999999999999999999999999999999999998888877766655432


Q ss_pred             CCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHH-HHhhcCCccccccc
Q 021119          108 EGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVI-TAMFKGPSSFDILQ  186 (317)
Q Consensus       108 ~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~-~~~~~g~~~~~~~~  186 (317)
                      ...  .....--.|++++..-++.++..-...||..|-.+..+.     ...+|.=++++|.++. +.++|+.+....-+
T Consensus       145 ~~~--~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~-----dtmfYnNllslPiL~~~s~~~edws~~n~an  217 (309)
T COG5070         145 ASA--FKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDF-----DTMFYNNLLSLPILLSFSFLFEDWSPGNLAN  217 (309)
T ss_pred             HHH--HHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchh-----hHHHHhhhHHHHHHHHHHHHhccCCcchhhc
Confidence            111  000011248888888887777766667766553211111     1123455566665542 33566554433445


Q ss_pred             ccchHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119          187 GHSKATMLLICNNAAQGI----LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  262 (317)
Q Consensus       187 ~~~~~~~~~il~~ai~g~----~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~  262 (317)
                      +.+.....+++..++...    +.++..+-.++.+-....++...-..+.|.++|+|+.+...+....+=+.+-.+|...
T Consensus       218 nl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYava  297 (309)
T COG5070         218 NLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA  297 (309)
T ss_pred             CCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            555444223332322222    2334444445555555566666778899999999999999999998888887777764


Q ss_pred             CCc
Q 021119          263 LSK  265 (317)
Q Consensus       263 ~~~  265 (317)
                      +++
T Consensus       298 ks~  300 (309)
T COG5070         298 KSK  300 (309)
T ss_pred             HHH
Confidence            343

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.68  E-value=1.4e-07  Score=75.29  Aligned_cols=74  Identities=24%  Similarity=0.293  Sum_probs=67.4

Q ss_pred             hhhHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 021119           29 RNNVLLAVPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ  102 (317)
Q Consensus        29 ~~~~~~~~~all-~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~  102 (317)
                      +++......+++ ....+.+.++++++++++..+++.++.|+++++++++++|||++++||.|+++.++|+.++.
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   51 RQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            445567777777 47999999999999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.63  E-value=4.6e-08  Score=78.91  Aligned_cols=74  Identities=20%  Similarity=0.287  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 021119           30 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL  103 (317)
Q Consensus        30 ~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~  103 (317)
                      .|.-..+.++...+.-.++|.|++.-+++...-+..++|++++++|+++||||++..+|+|+.+.++|++++..
T Consensus        66 ~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          66 SWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             eehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            34444555666779999999999999999999999999999999999999999999999999999999987753

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.59  E-value=6.5e-07  Score=71.70  Aligned_cols=65  Identities=12%  Similarity=0.118  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 021119           39 FLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL  103 (317)
Q Consensus        39 ll~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~  103 (317)
                      ++|.+...+...+++.+|.+.+..+.++.++++++++++++|||++++||+|+.+.++|++++..
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            56888999999999999999999999999999999999999999999999999999999988753

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.58  E-value=2.2e-06  Score=80.37  Aligned_cols=66  Identities=17%  Similarity=0.273  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119           40 LYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS  105 (317)
Q Consensus        40 l~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~  105 (317)
                      ++.+.+.+.+.|+.+.|++..+=+.....++.++++..+||||+++++|.|+.+.++|.+++...+
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA  124 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence            567888999999999999999999999999999999999999999999999999999998765443

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.52  E-value=2.3e-05  Score=71.91  Aligned_cols=217  Identities=13%  Similarity=0.092  Sum_probs=127.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHHHHHhhc
Q 021119           29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQWE----ALALLLIGISVNQL  103 (317)
Q Consensus        29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~erls~~q~l----al~l~~~Gv~iv~~  103 (317)
                      +.++.-++-+++..+.+..+|.+++++..|...=++ ..+.+.++++..++++|--+..+++    |+++.++|+.+...
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            344455566778899999999999999888777666 7888899999999999988887776    88899999998887


Q ss_pred             CCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q 021119          104 RSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD  183 (317)
Q Consensus       104 ~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~  183 (317)
                      ++..+..... .....-|+...+++.+....+.+..+. .+-    +.+..-.-. ..|.++....+.   .....   .
T Consensus       123 ~~~~~~~~~~-~~~~~kgi~~Ll~stigy~~Y~~~~~~-~~~----~~~~~~lPq-aiGm~i~a~i~~---~~~~~---~  189 (269)
T PF06800_consen  123 QDKKSDKSSS-KSNMKKGILALLISTIGYWIYSVIPKA-FHV----SGWSAFLPQ-AIGMLIGAFIFN---LFSKK---P  189 (269)
T ss_pred             cccccccccc-ccchhhHHHHHHHHHHHHHHHHHHHHh-cCC----ChhHhHHHH-HHHHHHHHHHHh---hcccc---c
Confidence            7653321100 111224777888888888787777554 221    222111111 123332221111   11111   1


Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchH----HHHHHHHHHHHHHHH
Q 021119          184 ILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTM----NFILGISIVFISMHQ  258 (317)
Q Consensus       184 ~~~~~~~~~~~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~----~~~lG~~lVi~gv~l  258 (317)
                      .++...+...+.=+.-++++...-.........+.-..+.+.++++++.|+++++|.=+.    ..++|.++++.|..+
T Consensus       190 ~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  190 FFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             ccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            122222211111111123332221112222222222234468999999999999998664    457899988887543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.38  E-value=5.3e-06  Score=66.09  Aligned_cols=119  Identities=15%  Similarity=0.241  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHH-----HHHHHHHHH
Q 021119          131 VPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLI-----CNNAAQGIL  205 (317)
Q Consensus       131 ~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~i-----l~~ai~g~~  205 (317)
                      +||.++++.|+..|+.  ++.. ...+....+.+ ..+...   ..+...    ....+...+...     +..+++..+
T Consensus         2 ~~a~~~~~~k~~~~~~--~~~~-~~~~~~~~~~~-~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (126)
T PF00892_consen    2 SWAIYSVFSKKLLKKI--SPLS-ITFWRFLIAGI-LLILLL---ILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLL   70 (126)
T ss_pred             eeeeHHHHHHHHhccC--CHHH-HHHHHHHHHHH-HHHHHH---hhcccc----ccCCChhhhhhhhHhhccceehHHHH
Confidence            5788999999998864  3333 33333334433 222211   111110    112222222222     222334444


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119          206 SSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  260 (317)
Q Consensus       206 v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~  260 (317)
                      ..+.+++.+.........+.|+++.++++++++|++++.+++|..+++.|+.+.+
T Consensus        71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            5566788888888888889999999999999999999999999999999988653

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.15  E-value=3.8e-05  Score=63.12  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=64.1

Q ss_pred             HHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 021119           34 LAVPAF-LYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKI--IMKRRFSIIQWEALALLLIGISVNQLRSL  106 (317)
Q Consensus        34 ~~~~al-l~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l--~L~erls~~q~lal~l~~~Gv~iv~~~~~  106 (317)
                      +...++ +|.++..+..++++..|++.+.-+.+..+..+++.++.  ++||+++.+||+|+++.++|+.++..++.
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            444555 68899999999999999999999999998888888885  89999999999999999999999976543

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.14  E-value=0.0002  Score=58.92  Aligned_cols=122  Identities=16%  Similarity=0.143  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHH
Q 021119          121 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNA  200 (317)
Q Consensus       121 G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~a  200 (317)
                      |+++++.+.++.+.+.+..|+=+++..+.+...   . . ...+.    ..    .          .+..+.+..+...+
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~---~-~-~~~~~----~~----~----------~p~~~i~lgl~~~~   59 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAW---D-F-IAALL----AF----G----------LALRAVLLGLAGYA   59 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchh---H-H-HHHHH----HH----h----------ccHHHHHHHHHHHH
Confidence            678888888888888888888776542211110   0 0 00000    00    0          00001222222222


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HcCCcchHHHHHHHHHHHHHHHHhcCCCCc
Q 021119          201 AQGILSSFFFKYADTILKKYSSTVATIFTGLASAA--LFGHTLTMNFILGISIVFISMHQFFSPLSK  265 (317)
Q Consensus       201 i~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~l--lfge~lt~~~~lG~~lVi~gv~ly~~~~~~  265 (317)
                      +.-.+-.+.+++.+........+...++..+.++.  +|||++|+.+++|.++|+.|+++.++..+|
T Consensus        60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            22222334445555444444444455566666664  899999999999999999999998774443

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.12  E-value=2.3e-05  Score=63.45  Aligned_cols=130  Identities=15%  Similarity=0.152  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHH
Q 021119          122 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAA  201 (317)
Q Consensus       122 ~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~ai  201 (317)
                      ..+.+++++++++..++.|--+++-  +|-. .+.-=.....++.....    ...|...  .....+...|..+...++
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~v--dp~~-At~IRtiVi~~~l~~v~----~~~g~~~--~~~~~~~k~~lflilSGl   75 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGV--DPDF-ATTIRTIVILIFLLIVL----LVTGNWQ--AGGEIGPKSWLFLILSGL   75 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc--CccH-HHHHHHHHHHHHHHHHH----HhcCcee--cccccCcceehhhhHHHH
Confidence            3678999999999999877666643  2221 11111111222211111    1223210  011123344444443433


Q ss_pred             HHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119          202 QGI----LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  260 (317)
Q Consensus       202 ~g~----~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~  260 (317)
                      .+.    +-...+|..++......+..+++++.++|++++||.+|..+++|..+|.+|+.+..
T Consensus        76 a~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          76 AGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            322    22223344444444556678999999999999999999999999999999977643

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.12  E-value=2.2e-05  Score=71.27  Aligned_cols=71  Identities=18%  Similarity=0.149  Sum_probs=62.5

Q ss_pred             hhhHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 021119           29 RNNVLLAVPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGIS   99 (317)
Q Consensus        29 ~~~~~~~~~all-~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~   99 (317)
                      +++......+++ ......+.++++++.++++.+++.++.|+++++++++++||+++..||.|+.+.+.|+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       189 LQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            344445666665 46889999999999999999999999999999999999999999999999999999873

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.03  E-value=8.1e-05  Score=62.07  Aligned_cols=71  Identities=24%  Similarity=0.360  Sum_probs=65.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 021119           31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN  101 (317)
Q Consensus        31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv  101 (317)
                      +......+++....|...|..+++++|.+++++...|.+.+.++++++++|+++..|+.|+++.++|+..-
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence            44456667788899999999999999999999999999999999999999999999999999999998753

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.03  E-value=0.00017  Score=58.39  Aligned_cols=76  Identities=12%  Similarity=0.168  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119           30 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS  105 (317)
Q Consensus        30 ~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~  105 (317)
                      +..+..+.-++|..+..+...+++++|.+.+..+. ....+.+++.+.+++||+++..|++++.+.++|++.+...+
T Consensus        29 ~~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         29 GNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            34455666778999999999999999999888885 79999999999999999999999999999999998886644

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.01  E-value=8.5e-05  Score=69.25  Aligned_cols=71  Identities=21%  Similarity=0.236  Sum_probs=63.2

Q ss_pred             HHHHHH-HHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119           35 AVPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS  105 (317)
Q Consensus        35 ~~~all-~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~  105 (317)
                      ...+++ ..++..++++++++.+++.++++..++|++.+++++++++|+++..|++|..+.++|++......
T Consensus       212 l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        212 LAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            344554 34788899999999999999999999999999999999999999999999999999998886554

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.00  E-value=0.00027  Score=65.40  Aligned_cols=129  Identities=9%  Similarity=-0.031  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHH--
Q 021119          122 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNN--  199 (317)
Q Consensus       122 ~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~--  199 (317)
                      ..+.+.+++++|...+..|+..+++   +.. + .+....+.++..+...    .....  ..+...+...+..++..  
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~~-~-~~~~~~~~~~l~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~   71 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKE---PDF-L-WWALLAHSVLLTPYGL----WYLAQ--VGWSRLPATFWLLLAISAV   71 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCch---hHH-H-HHHHHHHHHHHHHHHH----Hhccc--CCCCCcchhhHHHHHHHHH
Confidence            4677899999999999999877653   221 1 2222223333222211    11100  00111111122222222  


Q ss_pred             --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          200 --AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       200 --ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                        +....+....+++.+........+..|+++.+++++++||+++..+++|.++++.|+.+-..
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence              22233344456777777777777889999999999999999999999999999999887654

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.99  E-value=0.00027  Score=55.72  Aligned_cols=91  Identities=18%  Similarity=0.210  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHH
Q 021119           13 FYLQMPVISFILLQAA---RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQW   88 (317)
Q Consensus        13 ~~~~~p~~~~~~~~~~---~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll-~~~~pi~talls~l~L~erls~~q~   88 (317)
                      .++.+=.......|..   ++.++..+..++|.++..+.-.+++++|.+++..+ .....+.+++.+++++||+++..|+
T Consensus         9 lAi~~EV~~~~~lK~s~gf~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~   88 (106)
T COG2076           9 LAILLEVVGTTLLKYSDGFTRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKL   88 (106)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHH
Confidence            3444444444444444   35666777778899999999999999999776555 5889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 021119           89 EALALLLIGISVNQL  103 (317)
Q Consensus        89 lal~l~~~Gv~iv~~  103 (317)
                      +++.+.++|++....
T Consensus        89 ~gl~LiiaGvi~Lk~  103 (106)
T COG2076          89 LGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999988754

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.96  E-value=5.3e-05  Score=70.69  Aligned_cols=74  Identities=16%  Similarity=0.121  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119           31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR  104 (317)
Q Consensus        31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~  104 (317)
                      +......++...+...+.++++++.+++..+++.++.|++.+++++++++|+++..||+|.++.+.|+.+....
T Consensus       215 ~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        215 IIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            33344444445578889999999999999999999999999999999999999999999999999999887653

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.95  E-value=0.00039  Score=55.02  Aligned_cols=91  Identities=13%  Similarity=0.004  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHHH
Q 021119           13 FYLQMPVISFILLQAA---RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQW   88 (317)
Q Consensus        13 ~~~~~p~~~~~~~~~~---~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~erls~~q~   88 (317)
                      .++.+=.......|..   +++++..+.-++|..+..+...+++.+|.+++..+. ....+.+++.+++++||++++.|+
T Consensus         8 ~Ai~~Ev~~t~~Lk~s~gf~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~   87 (105)
T PRK11431          8 IAGLLEVVWAVGLKYTHGFSRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARL   87 (105)
T ss_pred             HHHHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            3444444444444433   334455566778899999999999999998776666 599999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 021119           89 EALALLLIGISVNQL  103 (317)
Q Consensus        89 lal~l~~~Gv~iv~~  103 (317)
                      +++.+.++|++.+..
T Consensus        88 ~gi~lIi~GVv~l~l  102 (105)
T PRK11431         88 LSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999988754

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.95  E-value=0.00037  Score=55.65  Aligned_cols=90  Identities=17%  Similarity=0.166  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHH
Q 021119           15 LQMPVISFILLQAA---RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEA   90 (317)
Q Consensus        15 ~~~p~~~~~~~~~~---~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll-~~~~pi~talls~l~L~erls~~q~la   90 (317)
                      +.+=.......|..   ++.++....-++|.++..+...+++++|.+.+..+ .....+.+++.+++++||+++..|+++
T Consensus        11 ~~~Ev~~~~~lK~s~gf~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~g   90 (110)
T PRK09541         11 ILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIG   90 (110)
T ss_pred             HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            33333433444443   33444455566788999999999999999988888 468999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 021119           91 LALLLIGISVNQLR  104 (317)
Q Consensus        91 l~l~~~Gv~iv~~~  104 (317)
                      +.+.++|++.+...
T Consensus        91 i~lIi~GVi~l~l~  104 (110)
T PRK09541         91 MMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999998654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.90  E-value=6.9e-05  Score=69.77  Aligned_cols=76  Identities=18%  Similarity=0.185  Sum_probs=66.3

Q ss_pred             hhhHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119           29 RNNVLLAVPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR  104 (317)
Q Consensus        29 ~~~~~~~~~all-~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~  104 (317)
                      +.+......+++ ..+...+.++++++.++++.+++..++|+++++++++++||+++..||+|.++.+.|+.+....
T Consensus       210 ~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        210 SGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            344455555665 4578889999999999999999999999999999999999999999999999999999888653

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.88  E-value=0.00058  Score=54.39  Aligned_cols=73  Identities=12%  Similarity=0.041  Sum_probs=63.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 021119           30 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ  102 (317)
Q Consensus        30 ~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~  102 (317)
                      ++++....-++|.++..+.-.+++++|.+++..+. ....+.+++.+.+++||++++.|++++.+.+.|++.+.
T Consensus        34 ~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         34 RKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            44555566678889999999999999998776665 68899999999999999999999999999999998764

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.86  E-value=0.00018  Score=68.91  Aligned_cols=66  Identities=20%  Similarity=0.286  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 021119           37 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ  102 (317)
Q Consensus        37 ~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~  102 (317)
                      -++.|.+.|.+.|++++++++.++++...++|+++.++++++++|+++..|++|.++.+.|+.+..
T Consensus       282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            356788999999999999999999999999999999999999999999999999999999998764

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.73  E-value=0.00018  Score=67.09  Aligned_cols=67  Identities=6%  Similarity=0.058  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119           38 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR  104 (317)
Q Consensus        38 all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~  104 (317)
                      ++...+...+.++++++.|++..+.+....|++..++++++++|+++..|+.|..+.++|+.++..+
T Consensus       220 g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        220 GIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4445578899999999999999999999999999999999999999999999999999888877654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.72  E-value=0.00027  Score=65.99  Aligned_cols=74  Identities=18%  Similarity=0.151  Sum_probs=63.4

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119           32 VLLAVPAFLY-AINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS  105 (317)
Q Consensus        32 ~~~~~~all~-~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~  105 (317)
                      ...+..+++- .+...+.+.+++++++++.+.+..+.|++.+++++++++|+++..||+|.++.++|+.+...+.
T Consensus       215 ~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        215 LSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            3344445443 4677888899999999999999999999999999999999999999999999999998876543

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.71  E-value=0.00018  Score=69.15  Aligned_cols=63  Identities=8%  Similarity=0.081  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119           43 INNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS  105 (317)
Q Consensus        43 ~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~  105 (317)
                      +...+.++++++.+++..++...+.|++++++++++|+|+++..|++|.++.+.|+.++..+.
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence            466778889999999999999999999999999999999999999999999999999987654

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.00025  Score=65.93  Aligned_cols=66  Identities=15%  Similarity=0.283  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119           40 LYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS  105 (317)
Q Consensus        40 l~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~  105 (317)
                      .+.+...+.|.|+.+.|++...-+.+++.++.++++..+||||++..-.+|+++.++|-.++....
T Consensus        73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha  138 (335)
T KOG2922|consen   73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA  138 (335)
T ss_pred             HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence            456888999999999999999999999999999999999999999999999999999987766543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.64  E-value=0.00011  Score=68.50  Aligned_cols=66  Identities=12%  Similarity=0.167  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119           40 LYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS  105 (317)
Q Consensus        40 l~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~  105 (317)
                      ++...|.+.|.+++++++.++++....+|++++++++++++|+++..|++|.++.+.|+.+.....
T Consensus       230 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k  295 (302)
T TIGR00817       230 FFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK  295 (302)
T ss_pred             HHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            455667788899999999999999999999999999999999999999999999999999887543

specificities overlap.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.60  E-value=0.00094  Score=54.13  Aligned_cols=43  Identities=21%  Similarity=0.281  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCC
Q 021119          221 SSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  263 (317)
Q Consensus       221 ~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~  263 (317)
                      .+.+..+.+++.|+++|||++|+.+++|..+++.|+..-+...
T Consensus        63 w~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         63 WEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            3457888999999999999999999999999999998877644

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.55  E-value=0.00078  Score=60.82  Aligned_cols=90  Identities=22%  Similarity=0.200  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCH
Q 021119           10 MVLFYLQMPVISFILLQAARNNV---LLAVPAFLY-AINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSI   85 (317)
Q Consensus        10 ~~~~~~~~p~~~~~~~~~~~~~~---~~~~~all~-~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~   85 (317)
                      .++..+++|+....---...++.   .-...+++. .+=..+-.++++++|..+|.++.++.|.+-++-.+++|+|++|.
T Consensus       185 ~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~  264 (292)
T COG5006         185 LVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTL  264 (292)
T ss_pred             HHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCH
Confidence            46788899988742222211111   112223443 36677888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 021119           86 IQWEALALLLIGIS   99 (317)
Q Consensus        86 ~q~lal~l~~~Gv~   99 (317)
                      .||+++...+.+.+
T Consensus       265 ~qwlaI~~ViaAsa  278 (292)
T COG5006         265 IQWLAIAAVIAASA  278 (292)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998887765

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.53  E-value=0.00076  Score=62.93  Aligned_cols=74  Identities=19%  Similarity=0.267  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHHHHhhc
Q 021119           30 NNVLLAVPAFLYAINNYLKFIMQL-YFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQW----EALALLLIGISVNQL  103 (317)
Q Consensus        30 ~~~~~~~~all~~~~n~l~f~al~-~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~----lal~l~~~Gv~iv~~  103 (317)
                      +.++..+.+++..+.+.+++.+.+ +.+++++.++.+..|+..++++.+++||+.+++|+    +|.++.+.|+.++..
T Consensus       210 ~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       210 AILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            444455577787889999999999 99999999999999999999999999999999999    999999999988753

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00688 rarD rarD protein

Probab=97.46  E-value=0.0057  Score=55.59  Aligned_cols=132  Identities=8%  Similarity=0.053  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-cccccccchH-HHHHHHH
Q 021119          121 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS-FDILQGHSKA-TMLLICN  198 (317)
Q Consensus       121 G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~-~~~~~~~~~~-~~~~il~  198 (317)
                      |..++++++++|+...+..|. ..+   .++.....+=.+++.++..+.+.   ....... ....+..+.. .+..+..
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~-~~~---~~~~~i~~~R~~~a~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKL-LKP---LPATDILGHRMIWSFPFMLLSVT---LFRQWAALIERLKRIQKRPLILSLLL   75 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH-hcc---CCHHHHHHHHHHHHHHHHHHHHH---HHcchHHHHHHHhCcccchHHHHHHH
Confidence            678899999999999999887 332   23332222223344333222111   1111000 0001111111 1111111


Q ss_pred             ----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 021119          199 ----NAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF  259 (317)
Q Consensus       199 ----~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly  259 (317)
                          .+....+..+..++.+........++.|+++.++++++++|+++..+++|.++.+.|+.+-
T Consensus        76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li  140 (256)
T TIGR00688        76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN  140 (256)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence                2222333444567777777777788899999999999999999999999999999997654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.43  E-value=0.0016  Score=50.25  Aligned_cols=82  Identities=13%  Similarity=0.251  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHH
Q 021119           13 FYLQMPVISFILLQAA---RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQW   88 (317)
Q Consensus        13 ~~~~~p~~~~~~~~~~---~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll-~~~~pi~talls~l~L~erls~~q~   88 (317)
                      ..+.+-.......|..   ++..+....-.+|..+..+...+++++|.+.+.-+ .....+.+++.+.+++||+++..||
T Consensus         8 ~a~~~ev~~~~~lK~s~g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~   87 (93)
T PF00893_consen    8 LAILFEVVGTIALKASHGFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKW   87 (93)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------H
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            3444444444444433   33444444445788999999999999999888665 5699999999999999999999999


Q ss_pred             HHHHHH
Q 021119           89 EALALL   94 (317)
Q Consensus        89 lal~l~   94 (317)
                      .++.+.
T Consensus        88 ~gi~lI   93 (93)
T PF00893_consen   88 LGIGLI   93 (93)
T ss_dssp             HHHHHH
T ss_pred             hheeeC
Confidence            998763

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.34  E-value=0.002  Score=51.54  Aligned_cols=57  Identities=9%  Similarity=0.118  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119          204 ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  260 (317)
Q Consensus       204 ~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~  260 (317)
                      .+....+|+.+........++.++++.++|+++|||++|+.+++|.++++.|+.+-.
T Consensus        52 ~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         52 VLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            334555666554444444558999999999999999999999999999999987643

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.25  E-value=0.0024  Score=58.09  Aligned_cols=76  Identities=24%  Similarity=0.284  Sum_probs=67.7

Q ss_pred             hhhHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119           29 RNNVLLAVPAFLYA-INNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR  104 (317)
Q Consensus        29 ~~~~~~~~~all~~-~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~  104 (317)
                      +++......+++.. ....+.+++++..+++..+.+..+.|++..++++++++|+++.+|++|.++.+.|+.+...+
T Consensus       212 ~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         212 RAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            44556666677666 68999999999999999999999999999999999999999999999999999999988654

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.16  E-value=0.25  Score=47.27  Aligned_cols=116  Identities=10%  Similarity=0.000  Sum_probs=78.5

Q ss_pred             HHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCC-------CCHHH
Q 021119           21 SFILLQAARN-----NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRR-------FSIIQ   87 (317)
Q Consensus        21 ~~~~~~~~~~-----~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~er-------ls~~q   87 (317)
                      .+.+..+-++     +..-.+-+++-.+.|..++.+++++-.|...-+. .+..+..+++..++++|=       -...-
T Consensus        58 ~~~f~~~~~~~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~  137 (345)
T PRK13499         58 LPDFWAYYSSFSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMT  137 (345)
T ss_pred             hhhHHHHHHhcCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHH
Confidence            3455555542     2233444667789999999999999988776665 788899999998888753       23456


Q ss_pred             HHHHHHHHHHHHHhhc----CCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHH
Q 021119           88 WEALALLLIGISVNQL----RSLPEGTSALGLPVATGAYLYTLIFVTVPSLAS  136 (317)
Q Consensus        88 ~lal~l~~~Gv~iv~~----~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~  136 (317)
                      .+|+++.++|+++...    ++..+++...+.....-|+...+++.+.+++++
T Consensus       138 ~~gv~liliGi~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        138 LLGVLVALIGVAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence            7788888999999987    332111000011112348888888888888888

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.15  E-value=0.0068  Score=48.39  Aligned_cols=42  Identities=21%  Similarity=0.311  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119          221 SSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  262 (317)
Q Consensus       221 ~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~  262 (317)
                      .+.+..+.+++.|+++|||++|+.+++|+.+++.|+.+-+..
T Consensus        63 w~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         63 WSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            345688889999999999999999999999999999988764

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.15  E-value=0.02  Score=53.63  Aligned_cols=121  Identities=15%  Similarity=0.234  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhhhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHH-HHHHHHHHHHHHHHHHH
Q 021119          134 LASVFNEYALKSQYDT--SIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATM-LLICNNAAQGILSSFFF  210 (317)
Q Consensus       134 l~~V~~ekl~k~~~~~--~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~-~~il~~ai~g~~v~~~~  210 (317)
                      ..++++|++.++....  +..+.-.| .++..+++.+...   ..+...    ....+...+ ...+...+...+....+
T Consensus        14 ~~g~~qE~i~~~~~~~~~~~~lt~~q-~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~al   85 (303)
T PF08449_consen   14 SYGILQEKIMTTPYGSPFPLFLTFVQ-FAFNALFSFILLS---LFKFPK----SRKIPLKKYAILSFLFFLASVLSNAAL   85 (303)
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHH-HHHHHHHHHHHHH---hccccC----CCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999886333  33333233 2333343333221   111010    011111122 12223333334445567


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119          211 KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  262 (317)
Q Consensus       211 k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~  262 (317)
                      +|.+--......+.+++.+++.+++++|++.+..++++.+++.+|+.++...
T Consensus        86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~  137 (303)
T PF08449_consen   86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLS  137 (303)
T ss_pred             HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeec
Confidence            7777667777778899999999999999999999999999999999998874

; GO: 0055085 transmembrane transport

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.01  E-value=0.0018  Score=51.87  Aligned_cols=71  Identities=20%  Similarity=0.247  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 021119           31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN  101 (317)
Q Consensus        31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll-~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv  101 (317)
                      +++|.+|=+++......+|+.+...|.|.+.-+ +++.-++|++.++++.+|..+++.|+|+.+.++|+.+.
T Consensus        41 n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   41 NPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            467888999999999999999999999998888 48999999999988888888999999999999998754

Many members are annotated as potential transmembrane proteins.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=96.84  E-value=0.014  Score=46.42  Aligned_cols=57  Identities=25%  Similarity=0.284  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          204 ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       204 ~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      ....+..++.++ .......+.|+++.+++.++|+|+++...++|.+++++|+.+-..
T Consensus        50 ~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   50 LLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW  106 (113)
T ss_pred             HHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            334455677764 444666689999999999999999999999999999999887665

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.83  E-value=0.013  Score=55.11  Aligned_cols=117  Identities=12%  Similarity=0.067  Sum_probs=75.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHH
Q 021119          119 TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICN  198 (317)
Q Consensus       119 ~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~  198 (317)
                      ..|..+.+.++++.+.+.+++||-.++....+....  .    + .                 .+.+.  ++.+|.-++.
T Consensus         6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~----~-~-----------------~~~l~--~~~W~~G~~~   59 (300)
T PF05653_consen    6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--S----G-G-----------------RSYLR--RPLWWIGLLL   59 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--c----h-h-----------------hHHHh--hHHHHHHHHH
Confidence            569999999999999999999987665421111000  0    0 0                 00000  1112222222


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          199 NAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       199 ~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      .+++.......+.++..........++.+++.+++..+++|+++...++|..+++.|..+...
T Consensus        60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            333333333344566666677777789999999999999999999999999999999765443

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.76  E-value=0.08  Score=41.81  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=44.2

Q ss_pred             HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          205 LSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       205 ~v~~~~k~~~-ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      +.+..+|+.+ .+.-+.-+.+.++.+.+.|+++|||+++...++|..+++.|+..-+.
T Consensus        46 ~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          46 LLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            3455556543 22234445678899999999999999999999999999999987765

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.63  E-value=0.15  Score=40.61  Aligned_cols=55  Identities=20%  Similarity=0.118  Sum_probs=41.2

Q ss_pred             HHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119          206 SSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  260 (317)
Q Consensus       206 v~~~~k~~~-ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~  260 (317)
                      .+..+|+.+ ++.-+..+.+..+.+++.|+++|||++|+.+++|.++++.|+..-+
T Consensus        52 Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         52 LSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            344445432 2222334557778999999999999999999999999999988754

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.49  E-value=0.037  Score=43.75  Aligned_cols=43  Identities=7%  Similarity=0.183  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          219 KYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       219 ~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      +..+.+..+.+++.|+++|||++|+.+++|..+++.|+..-+.
T Consensus        60 AvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         60 AVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            3345578889999999999999999999999999999987654

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.44  E-value=0.018  Score=52.63  Aligned_cols=66  Identities=18%  Similarity=0.081  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHH-HcCCc-----chHHHHHHHHHHHHHHHHhcCCCCcC
Q 021119          201 AQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAA-LFGHT-----LTMNFILGISIVFISMHQFFSPLSKV  266 (317)
Q Consensus       201 i~g~~v~~~~k~~~-ai~~~~~~~l~~v~t~l~s~l-lfge~-----lt~~~~lG~~lVi~gv~ly~~~~~~~  266 (317)
                      .++.+.-.++|... ++-.....+...+.++..|-+ +||++     -.+.-.+|++++++|..+|..-+++.
T Consensus        67 ~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen   67 TGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             cCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence            34444334444322 222233344556666666644 67654     23455899999999988887644444

The region concerned is approximately 280 residues long.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.23  E-value=0.23  Score=47.41  Aligned_cols=61  Identities=13%  Similarity=0.176  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119          201 AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       201 i~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      .++.+....++|.+-.........+++++.++|++++++..++.+++|.++.++|+.+...
T Consensus        91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~  151 (334)
T PF06027_consen   91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVV  151 (334)
T ss_pred             HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheee
Confidence            4555555667777766667777889999999999999999999999999999999887655

Some of the sequences in this family are annotated as putative membrane proteins.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=95.92  E-value=0.068  Score=48.68  Aligned_cols=70  Identities=20%  Similarity=0.165  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCCcCCCCC
Q 021119          201 AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEP  270 (317)
Q Consensus       201 i~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~~~~  270 (317)
                      +.+......+++.|+.+-.+....++++++++++++++.+++..+|++..+...|+.+........++.+
T Consensus        29 ~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~   98 (244)
T PF04142_consen   29 IQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNS   98 (244)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccc
Confidence            4455556677889988888888899999999999999999999999999999999998877555554443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.81  E-value=0.27  Score=47.07  Aligned_cols=136  Identities=13%  Similarity=0.069  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHH-HHHHhhcCCcccccccccchHHHHHH-
Q 021119          119 TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGI-VITAMFKGPSSFDILQGHSKATMLLI-  196 (317)
Q Consensus       119 ~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l-~~~~~~~g~~~~~~~~~~~~~~~~~i-  196 (317)
                      ..|+.+.+++++|++-..+-.|| .|+.+=+..     |. ..++...+... .......+. -.+.++..+...+... 
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~-----W~-v~gi~~wl~~~~~~g~~~~~~-f~~~~~~~~~~~~~~~~   77 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKK-VKKWSWETM-----WS-VGGIFSWLILPWLIAALLLPD-FWAYYSSFSGSTLLPVF   77 (345)
T ss_pred             HHHHHHHHHHHHHhhcccccccc-cCCCchhHH-----HH-HHHHHHHHHHHHHHHHHHhhh-HHHHHHhcCHHHHHHHH
Confidence            46899999999999887887777 565421222     32 22322111111 111111111 0122333343333221 


Q ss_pred             ---HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHcCCcc---h----HHHHHHHHHHHHHHHHhcCC
Q 021119          197 ---CNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTL---T----MNFILGISIVFISMHQFFSP  262 (317)
Q Consensus       197 ---l~~ai~g~~v~~~~k~~~-ai~~~~~~~l~~v~t~l~s~llfge~l---t----~~~~lG~~lVi~gv~ly~~~  262 (317)
                         +.-+++++.....+|+.. +..-.....++.+++++.+.+++||-.   +    ...++|.+++++|+.+....
T Consensus        78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence               122455555555666643 445566677888999999999998643   2    34689999999999887764

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=95.78  E-value=0.004  Score=58.69  Aligned_cols=72  Identities=14%  Similarity=0.211  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 021119           32 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL  103 (317)
Q Consensus        32 ~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~  103 (317)
                      ..+...++++.+.|...|..+.+++|-++++....|-+++...++++++++++..|..|..+.++|+..-..
T Consensus       236 ~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  236 LILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR  307 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            345555688999999999999999999999999999999999999999999999999999999999988754

>TIGR00803 nst UDP-galactose transporter

Probab=95.70  E-value=0.015  Score=51.78  Aligned_cols=66  Identities=11%  Similarity=0.086  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 021119           34 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGIS   99 (317)
Q Consensus        34 ~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~   99 (317)
                      ...+.++.++...+..+.++|.++.+..+...++++++++++.++++++++..||.|+.+.+.|+.
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF  220 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence            444556677888889999999999999999999999999999999999999999999999998864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.24  E-value=0.05  Score=48.91  Aligned_cols=75  Identities=16%  Similarity=0.264  Sum_probs=67.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 021119           29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL  103 (317)
Q Consensus        29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~  103 (317)
                      .-++-+...|++.++...+.|....+..|-+-+++..+.-+||.+.|.++++..++.+||+|-++.+.|...=..
T Consensus       239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~  313 (337)
T KOG1580|consen  239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV  313 (337)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence            345668888999999999999999999999999999999999999999999999999999999999988765443

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=94.99  E-value=1.7  Score=35.91  Aligned_cols=126  Identities=18%  Similarity=0.224  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHH
Q 021119          123 LYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQ  202 (317)
Q Consensus       123 ~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~ai~  202 (317)
                      ++.+.+.++.++++.++-++.|+.  .+++..+..-...|.+.......   ..++. ......+.+++.|.    .++.
T Consensus         4 lla~~aG~~i~~q~~~N~~L~~~~--gs~~~as~i~~~~G~i~~~i~~~---~~~~~-~~~~~~~~p~w~~l----GG~l   73 (138)
T PF04657_consen    4 LLALLAGALIALQAAFNGQLGKAL--GSPLVASFISFGVGFILLLIILL---ITGRP-SLASLSSVPWWAYL----GGLL   73 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHHHHH---Hhccc-ccchhccCChHHhc----cHHH
Confidence            556677777888999999987764  34555555545566665444332   22322 11122333443332    2222


Q ss_pred             HHH----HHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH-Hc---CCcchHHHHHHHHHHHHHHHH
Q 021119          203 GIL----SSFFFKYADTILK-KYSSTVATIFTGLASAA-LF---GHTLTMNFILGISIVFISMHQ  258 (317)
Q Consensus       203 g~~----v~~~~k~~~ai~~-~~~~~l~~v~t~l~s~l-lf---ge~lt~~~~lG~~lVi~gv~l  258 (317)
                      |..    ..+.......... .....-+.+.+.++..+ +|   .+++++..++|.++++.|+++
T Consensus        74 G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   74 GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            221    2222222222111 11122244555566654 33   468999999999999999864

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=94.78  E-value=0.16  Score=39.13  Aligned_cols=47  Identities=19%  Similarity=0.260  Sum_probs=23.8

Q ss_pred             HHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 021119          206 SSFFFKYADTIL-KKYSSTVATIFTGLASAALFGHTLTMNFILGISIV  252 (317)
Q Consensus       206 v~~~~k~~~ai~-~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lV  252 (317)
                      .+..+|+.+-.+ -+..+.+..+.+.+.|+++|||++|..+++|..+|
T Consensus        46 l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   46 LSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            344455543222 23345578889999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=94.56  E-value=0.083  Score=42.29  Aligned_cols=53  Identities=17%  Similarity=0.276  Sum_probs=41.5

Q ss_pred             HHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 021119          207 SFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF  259 (317)
Q Consensus       207 ~~~~k~~~-ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly  259 (317)
                      .+.+...| +.....+++++-+++.+.++++.+|..+...++|+++|+.|+.+.
T Consensus        59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            33444444 445566678899999999999988888999999999999998653

Many members are annotated as potential transmembrane proteins.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.05  E-value=0.085  Score=49.07  Aligned_cols=78  Identities=15%  Similarity=0.239  Sum_probs=67.2

Q ss_pred             HHHhhhhhHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 021119           24 LLQAARNNVL-LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN  101 (317)
Q Consensus        24 ~~~~~~~~~~-~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv  101 (317)
                      |..+-+|.++ +++.+.+.+......|+-++..-+-++.++.-+.=+++.++|.+..+++++..||.++.+.+.|+..=
T Consensus       233 F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~  311 (327)
T KOG1581|consen  233 FIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLE  311 (327)
T ss_pred             HHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHH
Confidence            3444444444 78889999999999999999999999999999999999999999999999999999998888887543

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=94.00  E-value=0.4  Score=44.43  Aligned_cols=76  Identities=16%  Similarity=0.191  Sum_probs=66.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119           29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR  104 (317)
Q Consensus        29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~  104 (317)
                      +.+..+...|...++--.++-.|-+++|.++..++.+..|...-+++.++.||+++.-|+.+-++.-+|+++...+
T Consensus       209 ~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d  284 (293)
T COG2962         209 SLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID  284 (293)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666677788888888999999999999999999999999999999999999999999999999888654

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=93.54  E-value=0.19  Score=46.34  Aligned_cols=64  Identities=19%  Similarity=0.121  Sum_probs=57.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 021119           29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALA   92 (317)
Q Consensus        29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~   92 (317)
                      |..++=.+.++++...|.+++++.+..-.++.-.++|+.++..++-+.++|||+=+++++..+.
T Consensus       193 k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~  256 (269)
T PF06800_consen  193 KKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL  256 (269)
T ss_pred             cchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence            4456678889999999999999999999999999999999999999999999999988875443

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=92.65  E-value=0.3  Score=38.41  Aligned_cols=81  Identities=16%  Similarity=0.149  Sum_probs=62.2

Q ss_pred             HHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH-HHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 021119           21 SFILLQAARN---NVLLAVPAFLYAINNYLKFIMQLYFNPATVK-MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLI   96 (317)
Q Consensus        21 ~~~~~~~~~~---~~~~~~~all~~~~n~l~f~al~~l~~s~~~-ll~~~~pi~talls~l~L~erls~~q~lal~l~~~   96 (317)
                      ++.+.|++|+   +|.|.+|=+++-....++|.-+++.|.+.+. +-+++...||+++...+--|...++..++..+.++
T Consensus        39 ~~~~lqe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~  118 (125)
T KOG4831|consen   39 IMIALQEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVF  118 (125)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhh
Confidence            3456677766   4679999999999999999999999987665 44577889999999877555555666777778777


Q ss_pred             HHHHh
Q 021119           97 GISVN  101 (317)
Q Consensus        97 Gv~iv  101 (317)
                      |+.+.
T Consensus       119 Gi~Lc  123 (125)
T KOG4831|consen  119 GIWLC  123 (125)
T ss_pred             hhhhe
Confidence            76543

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.33  E-value=12  Score=31.49  Aligned_cols=133  Identities=14%  Similarity=0.138  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHH
Q 021119          121 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNA  200 (317)
Q Consensus       121 G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~a  200 (317)
                      ..+..+.+.++..+++-.+-++.|.. + ++..-...-+..|++..+...+   ..++........+.+++.|.-   ..
T Consensus         6 ~ll~~i~aG~~l~~Q~~iN~qL~~~~-~-spl~As~isf~vGt~~L~~l~l---~~~~~~~~a~~~~~pwW~~~G---G~   77 (150)
T COG3238           6 YLLFAILAGALLPLQAAINGRLARYL-G-SPLLASLISFLVGTVLLLILLL---IKQGHPGLAAVASAPWWAWIG---GL   77 (150)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHHHHHHH---HhcCCCchhhccCCchHHHHc---cc
Confidence            44666777788888999999887654 2 3333333223344443222211   233332111223334444421   11


Q ss_pred             HHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHH-HcC---CcchHHHHHHHHHHHHHHHHhcC
Q 021119          201 AQGILSSFFF----KYADTILKKYSSTVATIFTGLASAA-LFG---HTLTMNFILGISIVFISMHQFFS  261 (317)
Q Consensus       201 i~g~~v~~~~----k~~~ai~~~~~~~l~~v~t~l~s~l-lfg---e~lt~~~~lG~~lVi~gv~ly~~  261 (317)
                      ++.+.+.--.    |...+.+......-+.+.+.++.-+ +||   .++++..++|.+++++|+++...
T Consensus        78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence            1222221111    1121222222222344445555544 333   57999999999999999777655

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.19  E-value=0.15  Score=47.81  Aligned_cols=71  Identities=11%  Similarity=0.105  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119          190 KATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF  260 (317)
Q Consensus       190 ~~~~~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~  260 (317)
                      +..|.-++..++|-..-...+-++.+.+.....+++++++.+++..+++|.+++.-.+|..+.+.|.++-.
T Consensus        65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV  135 (335)
T KOG2922|consen   65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV  135 (335)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence            34556667777777766556667888888888889999999999999999999999999999999965433

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=89.17  E-value=3.3  Score=32.62  Aligned_cols=85  Identities=15%  Similarity=0.097  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHhhh--hhHHHHHH----HHH-HHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHH
Q 021119           16 QMPVISFILLQAAR--NNVLLAVP----AFL-YAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQ   87 (317)
Q Consensus        16 ~~p~~~~~~~~~~~--~~~~~~~~----all-~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~erls~~q   87 (317)
                      .|-+++..=.|.+.  +++...+.    |+. |+.+--..=+|.+..+++.-.++. ......-++++.+++||++++.+
T Consensus        13 FMTfAWYGHLK~~~~~pl~~ail~SWgIAffEY~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~   92 (108)
T PF04342_consen   13 FMTFAWYGHLKFKSSKPLWIAILISWGIAFFEYCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNY   92 (108)
T ss_pred             HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHH
Confidence            45566554444433  33333332    232 455444445566666666666655 34445567799999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 021119           88 WEALALLLIGISV  100 (317)
Q Consensus        88 ~lal~l~~~Gv~i  100 (317)
                      ..|-++...++..
T Consensus        93 l~af~~i~~av~f  105 (108)
T PF04342_consen   93 LWAFLCILGAVYF  105 (108)
T ss_pred             HHHHHHHHHhhhe
Confidence            9998888766543

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=87.83  E-value=0.043  Score=49.64  Aligned_cols=204  Identities=15%  Similarity=0.109  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHHHHhhcCCCCCCCCC
Q 021119           38 AFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQW----EALALLLIGISVNQLRSLPEGTSA  112 (317)
Q Consensus        38 all~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~erls~~q~----lal~l~~~Gv~iv~~~~~~~~~~~  112 (317)
                      +++.......+|-+.+++..|.+.=++ .++.+-+.+++.+.++|=-+..|.    +|+++.++|+.+-..++..+..  
T Consensus        66 G~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~--  143 (288)
T COG4975          66 GAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE--  143 (288)
T ss_pred             hhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc--
Confidence            556678999999999999888877665 677888899999999998887664    5777888888777665531111  


Q ss_pred             CCCChh-hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchH
Q 021119          113 LGLPVA-TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKA  191 (317)
Q Consensus       113 ~~~~~~-~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~  191 (317)
                      .+.+.+ --|....+.+.+..-.+.|..+...-+. -..+.-|.+-|     ++....+-   ..+.+   .   ..+..
T Consensus       144 ~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g-~saiLPqAiGM-----v~~ali~~---~~~~~---~---~~~K~  208 (288)
T COG4975         144 EENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDG-LSAILPQAIGM-----VIGALILG---FFKME---K---RFNKY  208 (288)
T ss_pred             ccChHhhhhheeeeeeeccceeeeEeeeccccccc-hhhhhHHHHHH-----HHHHHHHh---hcccc---c---chHHH
Confidence            011111 1244444445544444444444322111 11122222222     22221111   11111   0   11223


Q ss_pred             HHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHH----HHHHHHHHHHHHHH
Q 021119          192 TMLLIC---NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMN----FILGISIVFISMHQ  258 (317)
Q Consensus       192 ~~~~il---~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~----~~lG~~lVi~gv~l  258 (317)
                      +|.-++   .-++++...-+.-+.....+.-..+.+..+++++-|+++++|+=|..    .++|..+++.|..+
T Consensus       209 t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~  282 (288)
T COG4975         209 TWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL  282 (288)
T ss_pred             HHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence            333322   22344432222111111000001123567899999999999987664    47888888887544

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=87.42  E-value=8.7  Score=36.63  Aligned_cols=136  Identities=13%  Similarity=0.147  Sum_probs=74.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHH--HHHHHHHHHHHHHHHhhcCCcccccccccchHHHHH
Q 021119          118 ATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLY--GYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLL  195 (317)
Q Consensus       118 ~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~--~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~  195 (317)
                      ...|+++..+++++++...+-.||+ |+-.    | ++.|+.  +++.++ .|.+.  +...-+.-.+.+...+..++..
T Consensus         5 ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws----W-Es~Wlv~gi~swli-~P~~~--a~l~ip~~~~i~~~~~~~~l~~   75 (344)
T PF06379_consen    5 IILGIIFHAIGGFASGSFYVPFKKV-KGWS----W-ESYWLVQGIFSWLI-VPWLW--ALLAIPDFFSIYSATPASTLFW   75 (344)
T ss_pred             HHHHHHHHHHHHHHhhhhccchhhc-CCcc----H-HHHHHHHHHHHHHH-HHHHH--HHHhCCcHHHHHHhCChhHHHH
Confidence            3568899999999999888888875 5431    2 333321  222221 12111  1111111112233333222222


Q ss_pred             H----HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHcC-------CcchHHHHHHHHHHHHHHHHhcCC
Q 021119          196 I----CNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFG-------HTLTMNFILGISIVFISMHQFFSP  262 (317)
Q Consensus       196 i----l~~ai~g~~v~~~~k~~~-ai~~~~~~~l~~v~t~l~s~llfg-------e~lt~~~~lG~~lVi~gv~ly~~~  262 (317)
                      .    +.-++++..-+..+||.. +.-.+.+.-+..++.+++.-++.|       .+-....++|.++.++|+.+..+.
T Consensus        76 ~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A  154 (344)
T PF06379_consen   76 TFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA  154 (344)
T ss_pred             HHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence            1    223567766677778754 444455555566677666555533       223346799999999999887765

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=85.49  E-value=5.7  Score=32.83  Aligned_cols=70  Identities=20%  Similarity=0.198  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHH-HHH----HhcCCCCHHHHHHHHHHHHHHHH
Q 021119           31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALL-LKI----IMKRRFSIIQWEALALLLIGISV  100 (317)
Q Consensus        31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~tall-s~l----~L~erls~~q~lal~l~~~Gv~i  100 (317)
                      .||+...+++....-.+..+....+.++...++.-+.-+..+++ -.+    .-|++++++|.+++.+.++|+.+
T Consensus        64 p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   64 PWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             ChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            45566688888888888888999999988887775555555544 333    46799999999999999999863

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=84.30  E-value=2.5  Score=40.65  Aligned_cols=63  Identities=13%  Similarity=0.096  Sum_probs=49.1

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCc
Q 021119          211 KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNI  273 (317)
Q Consensus       211 k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~~~~~~~  273 (317)
                      ++.+.....+.++.+-+|+..++.++-+|.+|+..+++..+-+.|+.+.+...+|++++...+
T Consensus       181 a~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~  243 (416)
T KOG2765|consen  181 AFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPAS  243 (416)
T ss_pred             hhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCcc
Confidence            333333344455667789999999999999999999999999999999998777776654443

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=83.57  E-value=0.27  Score=44.59  Aligned_cols=64  Identities=17%  Similarity=0.195  Sum_probs=58.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 021119           29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALA   92 (317)
Q Consensus        29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~   92 (317)
                      |..++-.+|++.....|..++++.+..-.++.--++|+..+...+=..++||||=++++|..+.
T Consensus       207 K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~  270 (288)
T COG4975         207 KYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVI  270 (288)
T ss_pred             HHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhh
Confidence            5567788999999999999999999999999999999999999999999999999999986553

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=83.48  E-value=2.3  Score=33.48  Aligned_cols=38  Identities=11%  Similarity=0.182  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 021119          222 STVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF  259 (317)
Q Consensus       222 ~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly  259 (317)
                      ..++..+=+.++++.++|++++.++.|+++++++++..
T Consensus        69 EvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   69 EVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             HHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            33444444566778899999999999999999998753

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=81.65  E-value=0.54  Score=43.25  Aligned_cols=71  Identities=10%  Similarity=0.111  Sum_probs=63.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 021119           28 ARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGI   98 (317)
Q Consensus        28 ~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv   98 (317)
                      +|||+.+...++..++...+.-.|+|.=-++-.++..++..++..++-.+++|+-.+++.|.|.++.+...
T Consensus       250 gkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~  320 (346)
T KOG4510|consen  250 GKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSST  320 (346)
T ss_pred             ccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhH
Confidence            38899999999999999999999999999999999999999999999999999999999997766554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.63
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.48
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.27
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.81

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.63  E-value=7.9e-07  Score=69.92  Aligned_cols=74  Identities=16%  Similarity=0.169  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119           32 VLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS  105 (317)
Q Consensus        32 ~~~~~~all~~~~n~l~f~al~~l~~s~~~ll-~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~  105 (317)
                      ++...-.++|.++..+..++++++|.+.+..+ ..+.|+++++++++++||++++.||+|+.+.++|+..+...+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           31 WPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            34444455788999999999999999999888 899999999999999999999999999999999999987643

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.48  E-value=3.7e-07  Score=74.65  Aligned_cols=73  Identities=16%  Similarity=0.183  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119           33 LLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS  105 (317)
Q Consensus        33 ~~~~~all~~~~n~l~f~al~~l~~s~~~ll-~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~  105 (317)
                      +..+-.+++.++..+.+++++++|++.+..+ .++.|+++++++++++||++++.||+|+++.++|+.++...+
T Consensus        32 ~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             --CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3444455788999999999999999988888 899999999999999999999999999999999999987643

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.27  E-value=8.2e-07  Score=72.55  Aligned_cols=60  Identities=20%  Similarity=0.215  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCC
Q 021119          204 ILSSFFFKYADTILKKYS-STVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL  263 (317)
Q Consensus       204 ~~v~~~~k~~~ai~~~~~-~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~  263 (317)
                      .+..+.+|+.+....... ..+.++++.++|+++|||++|+.+++|+++|+.|+++.+...
T Consensus        45 ~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344555666655544444 688999999999999999999999999999999999887643

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.81  E-value=0.00014  Score=56.83  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=47.4

Q ss_pred             HHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119          205 LSSFFFKYADTILKKYS-STVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP  262 (317)
Q Consensus       205 ~v~~~~k~~~ai~~~~~-~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~  262 (317)
                      +....+|+.+....... ..+.++++.+.++++|||++|+.+++|.++|+.|+.+.+..
T Consensus        46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34556677665554343 67899999999999999999999999999999999988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00