Citrus Sinensis ID: 021128

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MAHRRARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVLKFS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHcccEEEEEEEEcEEccccccccccccccEEEEEEcccEEEEEEccccccccccEEEEEEEEEEEEcccccccccEEEEccccccccccccccEEEEEEEccccccEEccccEEEEEEccHHHHccccEEEEEccccccEEEEEccccccccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccccccccEEEEEEEHHHHHcccEEEEEEcccccccccccccccccccccEEEEEcccccEEEcccccccccccEEEEEEEEEEEEccccccccEEEEccccccccccccccEEEEEEEcccccEEEccccEEEEEEEEHHHHHccccEEEccccccEEEEEEEcccccccccEEEEccccccccccc
Coil and Loop (DISEMBL)
MAHRRARLLFLLCALCYALNVIAGKSYYEvlqvprgasdEQIKRAYRKLALkyhpdknqgneEANKRFAEINNAyevlsdsetrniydtygeeglkqhaagggrgggmgvNIQDIFssffgggpmeedekivkgdDVIVELDATLEdlymggslkvwreknvikpapgkrrcncrnevyhkqigpgmFQQMTEQVCDQCQnvkyeregYFVTVDIEkgmqdgqevvfyedgepkidgepgdlkfrirtaphdrfrregnnlhTTVTVTLVQALVGFEKTIEHLDEHLVDIStkvsmnmcfgtsFAMTKKRIEVLKFS
Flexible Loop (DISEMBL)
MAHRRARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLAlkyhpdknqgneEANKRFAEINNayevlsdsetRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLymggslkvwreknvikpapgkrrcncRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDgepkidgepgdlkFRIRTAPhdrfrregnnlhttVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVLKFS
Low Complexity Region (SEG)
MAHrrarllfllcalcyalNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAgggrgggmgVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNlhttvtvtlvqalvGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVLKFS
Disordered region (IsUnstruct)
*****ARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKY****************EINNAYEVLSD*ETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYED***********LKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEV****
Disordered Region (DISOPRED)
****RARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGE*****************VNIQDIF***********************ELDATLEDLYMGGSLKVWREKNVIK*****************QIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVV*********DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKK*IE*****
Disordered Region (DISEMBL)
MAHRRARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVLKFS
Disordered Region (DISPRO)
**HRRARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPM*******KGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKK********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAHRRARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGxxxxxxxxxxxxxxxxxxxxxETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVLKFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
Q6TUG0	358	DnaJ homolog subfamily B	yes	no	0.858	0.759	0.503	2e-71
Q99KV1	358	DnaJ homolog subfamily B	yes	no	0.858	0.759	0.503	3e-71
Q5RAJ6	358	DnaJ homolog subfamily B	yes	no	0.858	0.759	0.496	7e-71
Q9UBS4	358	DnaJ homolog subfamily B	yes	no	0.858	0.759	0.496	7e-71
Q3ZBA6	358	DnaJ homolog subfamily B	yes	no	0.858	0.759	0.493	2e-70
P81999	358	DnaJ homolog subfamily B	yes	no	0.823	0.729	0.498	5e-69
Q8MPX3	355	DnaJ homolog dnj-20 OS=Ca	yes	no	0.880	0.785	0.434	2e-56
Q626I7	382	DnaJ homolog dnj-20 OS=Ca	N/A	no	0.883	0.732	0.396	1e-48
Q9JMC3	397	DnaJ homolog subfamily A	no	no	0.817	0.652	0.383	3e-43
Q8WW22	397	DnaJ homolog subfamily A	no	no	0.817	0.652	0.376	6e-43

>sp|Q6TUG0|DJB11_RAT DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1

 Score =  269 bits (687), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 146/290 (50%), Positives = 189/290 (65%), Gaps = 18/290 (6%)

Query: 10  FLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFA 69
           F L  L     VIAG+ +Y++L VPR AS + IK+AYRKLAL+ HPD+N  + +A ++F 
Sbjct: 9   FCLLLLYLIGAVIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQ 68

Query: 70  EINNAYEVLSDSETRNIYDTYGEEGLKQ-HAAGGGRGGGMGVNIQDIFS-------SFFG 121
           ++  AYEVLSDSE R  YDTYGEEGLK  H +  G          DIFS         FG
Sbjct: 69  DLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHG----------DIFSHFFGDFGFMFG 118

Query: 122 GGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHK 181
           G P ++D  I +G D+IV+L+ TLE++Y G  ++V R K V + APGKR+CNCR E+   
Sbjct: 119 GAPRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTT 178

Query: 182 QIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGD 241
           Q+GPG FQ   E VCD+C NVK   E   + V+IE G++DG E  F  +GEP +DGEPGD
Sbjct: 179 QLGPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGD 238

Query: 242 LKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIS 291
           L+FRI+   H  F R G++L+T VTV+LV+ALVGFE  I HLD H V IS
Sbjct: 239 LRFRIKVVKHRIFERRGDDLYTNVTVSLVEALVGFEMDITHLDGHKVHIS 288

Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.
Rattus norvegicus (taxid: 10116)

>sp|Q99KV1|DJB11_MOUSE DnaJ homolog subfamily B member 11 OS=Mus musculus GN=Dnajb11 PE=1 SV=1

 Score =  268 bits (686), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 146/290 (50%), Positives = 189/290 (65%), Gaps = 18/290 (6%)

Query: 10  FLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFA 69
           F L  L     VIAG+ +Y++L VPR AS + IK+AYRKLAL+ HPD+N  + +A ++F 
Sbjct: 9   FCLLLLYLIGTVIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQ 68

Query: 70  EINNAYEVLSDSETRNIYDTYGEEGLKQ-HAAGGGRGGGMGVNIQDIFS-------SFFG 121
           ++  AYEVLSDSE R  YDTYGEEGLK  H +  G          DIFS         FG
Sbjct: 69  DLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHG----------DIFSHFFGDFGFMFG 118

Query: 122 GGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHK 181
           G P ++D  I +G D+IV+L+ TLE++Y G  ++V R K V + APGKR+CNCR E+   
Sbjct: 119 GTPRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTT 178

Query: 182 QIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGD 241
           Q+GPG FQ   E VCD+C NVK   E   + V+IE G++DG E  F  +GEP +DGEPGD
Sbjct: 179 QLGPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGD 238

Query: 242 LKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIS 291
           L+FRI+   H  F R G++L+T VTV+LV+ALVGFE  I HLD H V IS
Sbjct: 239 LRFRIKVVKHRIFERRGDDLYTNVTVSLVEALVGFEMDITHLDGHKVHIS 288

Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.

Mus musculus (taxid: 10090)

>sp|Q5RAJ6|DJB11_PONAB DnaJ homolog subfamily B member 11 OS=Pongo abelii GN=DNAJB11 PE=2 SV=1

 Score =  267 bits (683), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 144/290 (49%), Positives = 189/290 (65%), Gaps = 18/290 (6%)

Query: 10  FLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFA 69
           F L  L     VIAG+ +Y++L VPR AS + IK+AYRKLAL+ HPD+N  + +A ++F 
Sbjct: 9   FCLLLLYLIGAVIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQ 68

Query: 70  EINNAYEVLSDSETRNIYDTYGEEGLKQ-HAAGGGRGGGMGVNIQDIFS-------SFFG 121
           ++  AYEVLSDSE R  YDTYGEEGLK  H +  G          DIFS         FG
Sbjct: 69  DLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHG----------DIFSHFFGDFGFMFG 118

Query: 122 GGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHK 181
           G P ++D  I +G D+IV+L+ TLE++Y G  ++V R K V + APGKR+CNCR E+   
Sbjct: 119 GTPRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTT 178

Query: 182 QIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGD 241
           Q+GPG FQ   E VCD+C NVK   E   + V+IE G++DG E  F  +GEP +DGEPGD
Sbjct: 179 QLGPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGD 238

Query: 242 LKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIS 291
           L+FRI+   H  F R G++L+T VT++LV++LVGFE  I HLD H V IS
Sbjct: 239 LRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHIS 288

Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.

Pongo abelii (taxid: 9601)

>sp|Q9UBS4|DJB11_HUMAN DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1

 Score =  267 bits (683), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 144/290 (49%), Positives = 189/290 (65%), Gaps = 18/290 (6%)

Query: 10  FLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFA 69
           F L  L     VIAG+ +Y++L VPR AS + IK+AYRKLAL+ HPD+N  + +A ++F 
Sbjct: 9   FCLLLLYLIGAVIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQ 68

Query: 70  EINNAYEVLSDSETRNIYDTYGEEGLKQ-HAAGGGRGGGMGVNIQDIFS-------SFFG 121
           ++  AYEVLSDSE R  YDTYGEEGLK  H +  G          DIFS         FG
Sbjct: 69  DLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHG----------DIFSHFFGDFGFMFG 118

Query: 122 GGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHK 181
           G P ++D  I +G D+IV+L+ TLE++Y G  ++V R K V + APGKR+CNCR E+   
Sbjct: 119 GTPRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTT 178

Query: 182 QIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGD 241
           Q+GPG FQ   E VCD+C NVK   E   + V+IE G++DG E  F  +GEP +DGEPGD
Sbjct: 179 QLGPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGD 238

Query: 242 LKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIS 291
           L+FRI+   H  F R G++L+T VT++LV++LVGFE  I HLD H V IS
Sbjct: 239 LRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHIS 288

Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q3ZBA6|DJB11_BOVIN DnaJ homolog subfamily B member 11 OS=Bos taurus GN=DNAJB11 PE=2 SV=1

 Score =  266 bits (679), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/290 (49%), Positives = 188/290 (64%), Gaps = 18/290 (6%)

Query: 10  FLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFA 69
           F L  L     VIAG+ +Y++L VPR AS + IK+AYRKLAL+ HPD+N  +  A ++F 
Sbjct: 9   FCLLLLYLIGTVIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPRAQEKFQ 68

Query: 70  EINNAYEVLSDSETRNIYDTYGEEGLKQ-HAAGGGRGGGMGVNIQDIFS-------SFFG 121
           ++  AYEVLSDSE R  YDTYGEEGLK  H +  G          DIFS         FG
Sbjct: 69  DLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHG----------DIFSHFFGDFGFMFG 118

Query: 122 GGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHK 181
           G P ++D  I +G D+IV+L+ TLE++Y G  ++V R K V + APGKR+CNCR E+   
Sbjct: 119 GTPRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTT 178

Query: 182 QIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGD 241
           Q+GPG FQ   E VCD+C NVK   E   + V+IE G++DG E  F  +GEP +DGEPGD
Sbjct: 179 QLGPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGD 238

Query: 242 LKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIS 291
           L+FRI+   H  F R G++L+T VT++LV++LVGF+  I HLD H V IS
Sbjct: 239 LRFRIKVVKHSIFERRGDDLYTNVTISLVESLVGFDMDITHLDGHKVHIS 288

Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.

Bos taurus (taxid: 9913)

>sp|P81999|DJB11_CANFA DnaJ homolog subfamily B member 11 OS=Canis familiaris GN=DNAJB11 PE=1 SV=2

 Score =  261 bits (667), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 139/279 (49%), Positives = 184/279 (65%), Gaps = 18/279 (6%)

Query: 21  VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80
            IAG+ +Y++L VPR AS + IK+AYRKLAL+ HPD+N  +  A ++F ++  AYEVLSD
Sbjct: 20  AIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPRAQEKFQDLGAAYEVLSD 79

Query: 81  SETRNIYDTYGEEGLKQ-HAAGGGRGGGMGVNIQDIFS-------SFFGGGPMEEDEKIV 132
           SE R  YDTYGEEGLK  H +  G          DIFS         FGG P ++D  I 
Sbjct: 80  SEKRKQYDTYGEEGLKDGHQSSHG----------DIFSHFFGDFGFMFGGTPRQQDRNIP 129

Query: 133 KGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMT 192
           +G D+IV+L+ TLE++Y G  ++V R K V + APGKR+CNCR E+   Q+GPG FQ   
Sbjct: 130 RGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQ 189

Query: 193 EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHD 252
           E VCD+C NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL+FRI+   H 
Sbjct: 190 EVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHP 249

Query: 253 RFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIS 291
            F R G++L+T VT++LV++LVGF+  I HLD H V IS
Sbjct: 250 IFERRGDDLYTNVTISLVESLVGFDMDITHLDGHKVHIS 288

Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.

Canis familiaris (taxid: 9615)

>sp|Q8MPX3|DNJ20_CAEEL DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=dnj-20 PE=4 SV=2

 Score =  219 bits (558), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/281 (43%), Positives = 181/281 (64%), Gaps = 2/281 (0%)

Query: 10  FLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFA 69
            L+ A      V  G+ +Y++L V + A+  QIK+AYRKLA + HPD+NQ +E AN++F 
Sbjct: 8   LLVLASSLVAFVECGRDFYKILGVAKNANANQIKKAYRKLAKELHPDRNQDDEMANEKFQ 67

Query: 70  EINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDE 129
           ++++AYEVLSD E R +YD +GEEG+ +   GGG G     +    F    GG     +E
Sbjct: 68  DLSSAYEVLSDKEKRAMYDRHGEEGVAKMGGGGGGGHDPFSSFFGDFFGGGGG--HGGEE 125

Query: 130 KIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQ 189
              KG DV ++L  TLE++Y G  +++ R+K V K   G R+CNCR+E+  +Q+G G FQ
Sbjct: 126 GTPKGADVTIDLFVTLEEVYNGHFVEIKRKKAVYKQTSGTRQCNCRHEMRTEQMGQGRFQ 185

Query: 190 QMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTA 249
               +VCD+C NVK  +E   + V++E G  +G + +F+ +GEP I+G+PGDLKF+IR  
Sbjct: 186 MFQVKVCDECPNVKLVQENKVLEVEVEVGADNGHQQIFHGEGEPHIEGDPGDLKFKIRIQ 245

Query: 250 PHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDI 290
            H RF R+G++L+T VT++L  AL GFE  I+HLD H+V +
Sbjct: 246 KHPRFERKGDDLYTNVTISLQDALNGFEMEIQHLDGHIVKV 286

Caenorhabditis elegans (taxid: 6239)

>sp|Q626I7|DNJ20_CAEBR DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=dnj-20 PE=4 SV=1

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 177/310 (57%), Gaps = 30/310 (9%)

Query: 9   LFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRF 68
           L +L A      V  G+ +Y++L V + A+  QIK+AYRK A + HPD+N  +E AN++F
Sbjct: 8   LLVLTAFLVDF-VECGRDFYKILGVSKNANANQIKKAYRKQAKELHPDRNPDDEMANEKF 66

Query: 69  AEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEED 128
            +++ AYEVLSD E R +YD +GEEG+ +   GGG G     +    F    GGG    D
Sbjct: 67  QDLSAAYEVLSDKEKRAMYDRHGEEGVAKMGGGGGGGHDPFSSFFGDFFG--GGGGNGGD 124

Query: 129 EKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMF 188
           E   KG DV ++L  TLE+ Y G  +++ R+K V K   G R+CNCR+E+  +Q+G G F
Sbjct: 125 EGTPKGADVTIDLFVTLEEAYNGHFVEIKRKKAVYKQTSGTRQCNCRHEMRTEQMGQGRF 184

Query: 189 QQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRT 248
           Q    +VCD+C NVK  +E   + V++E G  +G   +F+ +GEP I+G+PGDLKF+IR 
Sbjct: 185 QMFQVKVCDECPNVKLVQENKVLEVEVEVGADEGHTQIFHGEGEPHIEGDPGDLKFKIRI 244

Query: 249 APHD---------------------------RFRREGNNLHTTVTVTLVQALVGFEKTIE 281
             H                            RF R+G++L+T VT++L  AL GFE  I 
Sbjct: 245 QKHPRFLISVTGIEIIELKVDELVELLLEGIRFERKGDDLYTNVTISLQDALNGFEMEIL 304

Query: 282 HLDEHLVDIS 291
           HLD H+V + 
Sbjct: 305 HLDGHMVKVQ 314

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/295 (38%), Positives = 171/295 (57%), Gaps = 36/295 (12%)

Query: 26  SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRN 85
            YY++L V   AS E+IK+AYRKLALKYHPDKN    +  ++F  I+ AYEVLSD + R+
Sbjct: 6   QYYDILGVKPSASPEEIKKAYRKLALKYHPDKN---PDEGEKFKLISQAYEVLSDPKKRD 62

Query: 86  IYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATL 145
           IYD  GE+ +K+  +G         +  DIF  FFGGG     E+  +G +V+ +L  TL
Sbjct: 63  IYDQGGEQAIKEGGSGSP----SFSSPMDIFDMFFGGGGRMTRER--RGKNVVHQLSVTL 116

Query: 146 EDLYMGGSLKVWREKNVI----KPAPGKR----RCN-CRN---EVYHKQIGPGMFQQM-- 191
           EDLY G + K+  +KNVI    +   GK+    +C  C+    +V+ +QIGPGM QQ+  
Sbjct: 117 EDLYNGITKKLALQKNVICEKCEGIGGKKGSVEKCPLCKGRGMQVHIQQIGPGMVQQIQT 176

Query: 192 -------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGE 238
                         +  C+ C   K  RE   + V +EKGM+DGQ+++F+ +G+ + + +
Sbjct: 177 VCIECKGQGERINPKDRCENCSGAKVTREKKIIEVHVEKGMKDGQKILFHGEGDQEPELD 236

Query: 239 PGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           PGD+   +    H  F+R G +L   + + L +AL GF+KTI+ LD+ ++ IS+K
Sbjct: 237 PGDVIIVLDQKDHSVFQRRGQDLIMKMKIQLSEALCGFKKTIKTLDDRVLVISSK 291

Mus musculus (taxid: 10090)

>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1

 Score =  174 bits (442), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/295 (37%), Positives = 171/295 (57%), Gaps = 36/295 (12%)

Query: 26  SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRN 85
            YY++L V   AS E+IK+AYRKLALKYHPDKN    +  ++F  I+ AYEVLSD + R+
Sbjct: 6   QYYDILGVKPSASPEEIKKAYRKLALKYHPDKN---PDEGEKFKLISQAYEVLSDPKKRD 62

Query: 86  IYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATL 145
           +YD  GE+ +K+  +G         +  DIF  FFGGG     E+  +G +V+ +L  TL
Sbjct: 63  VYDQGGEQAIKEGGSGSP----SFSSPMDIFDMFFGGGGRMARER--RGKNVVHQLSVTL 116

Query: 146 EDLYMGGSLKVWREKNVI----KPAPGKR----RCN-CRN---EVYHKQIGPGMFQQM-- 191
           EDLY G + K+  +KNVI    +   GK+    +C  C+    +++ +QIGPGM QQ+  
Sbjct: 117 EDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQT 176

Query: 192 -------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGE 238
                         +  C+ C   K  RE   + V +EKGM+DGQ+++F+ +G+ + + E
Sbjct: 177 VCIECKGQGERINPKDRCESCSGAKVIREKKIIEVHVEKGMKDGQKILFHGEGDQEPELE 236

Query: 239 PGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           PGD+   +    H  F+R G++L   + + L +AL GF+KTI+ LD  ++ I++K
Sbjct: 237 PGDVIIVLDQKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKTLDNRILVITSK 291

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
356505618	343	PREDICTED: dnaJ homolog subfamily B memb	0.917	0.848	0.863	1e-150
356572775	343	PREDICTED: dnaJ homolog subfamily B memb	0.917	0.848	0.856	1e-147
225437515	345	PREDICTED: dnaJ homolog subfamily B memb	0.921	0.846	0.874	1e-146
224064488	345	predicted protein [Populus trichocarpa]	0.905	0.831	0.882	1e-144
224131018	349	predicted protein [Populus trichocarpa]	0.917	0.833	0.880	1e-143
255548499	345	Chaperone protein dnaJ, putative [Ricinu	0.924	0.849	0.890	1e-141
449436439	344	PREDICTED: dnaJ homolog subfamily B memb	0.917	0.845	0.833	1e-141
297821166	346	DNAJ heat shock family protein [Arabidop	0.924	0.846	0.809	1e-135
356501879	346	PREDICTED: dnaJ homolog subfamily B memb	0.924	0.846	0.833	1e-134
357511325	344	DnaJ homolog subfamily B member [Medicag	0.917	0.845	0.853	1e-134

>gi|356505618|ref|XP_003521587.1| PREDICTED: dnaJ homolog subfamily B member 11-like [Glycine max]

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/293 (86%), Positives = 275/293 (93%), Gaps = 2/293 (0%)

Query: 1   MAHRRARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG 60
           MA R A LLFLLCALCY+L  IAGKSYY++LQ+ +GASDEQIKRAYRKLALKYHPDKN G
Sbjct: 1   MAPRGATLLFLLCALCYSLIAIAGKSYYDILQLSKGASDEQIKRAYRKLALKYHPDKNPG 60

Query: 61  NEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFF 120
           NEEANK+FAEI+NAYEVLSDSE RNIYD YGEEGLKQHAA GGRGGGM  N QDIFS+FF
Sbjct: 61  NEEANKKFAEISNAYEVLSDSEKRNIYDRYGEEGLKQHAASGGRGGGM--NFQDIFSTFF 118

Query: 121 GGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYH 180
           GGGPMEE+EKIVKGDD++V+LDATLEDLYMGG+LKVWREKNV+KPAPGKRRCNCRNEVYH
Sbjct: 119 GGGPMEEEEKIVKGDDLVVDLDATLEDLYMGGTLKVWREKNVLKPAPGKRRCNCRNEVYH 178

Query: 181 KQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPG 240
           KQIGPGMFQQMTEQVC+QC NVKY REGYF+TVDIEKGMQDGQEV+FYEDGEP IDGE G
Sbjct: 179 KQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVLFYEDGEPIIDGESG 238

Query: 241 DLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           DL+FRIRTAPHD FRREGN+LH+TVT+TLVQALVGFEKTI+HLDEHLVDISTK
Sbjct: 239 DLRFRIRTAPHDVFRREGNDLHSTVTITLVQALVGFEKTIKHLDEHLVDISTK 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572775|ref|XP_003554541.1| PREDICTED: dnaJ homolog subfamily B member 11-like [Glycine max]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 251/293 (85%), Positives = 271/293 (92%), Gaps = 2/293 (0%)

Query: 1   MAHRRARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG 60
           MAHR A L FLL A+CY+L  IAGKSYY++LQ+ +GASDEQIKRAYRKLALKYHPDKN G
Sbjct: 1   MAHRGATLFFLLFAICYSLIAIAGKSYYDILQLSKGASDEQIKRAYRKLALKYHPDKNPG 60

Query: 61  NEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFF 120
           NEEANK+FAEI+NAYEVLSDSE RNIYD YGEEGLKQHAA GGRGGGM  N QDIF SFF
Sbjct: 61  NEEANKKFAEISNAYEVLSDSEKRNIYDRYGEEGLKQHAASGGRGGGM--NFQDIFGSFF 118

Query: 121 GGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYH 180
           GGG MEE+EKIVKGDDV+V+LDATLEDLYMGG+LKVWREKNV+KPA GKRRCNCRNEVYH
Sbjct: 119 GGGQMEEEEKIVKGDDVVVDLDATLEDLYMGGTLKVWREKNVLKPASGKRRCNCRNEVYH 178

Query: 181 KQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPG 240
           KQIGPGMFQQMTEQVC+QC NVKY REGYF+TVDIEKGMQDGQEV+FYEDGEP IDGE G
Sbjct: 179 KQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVLFYEDGEPIIDGESG 238

Query: 241 DLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           DL+FRIRTAPHD FRREGN+LHTTVT+TLVQALVGFEKTI+HLDEHLVDISTK
Sbjct: 239 DLRFRIRTAPHDVFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISTK 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437515|ref|XP_002275221.1| PREDICTED: dnaJ homolog subfamily B member 11 [Vitis vinifera] gi|147769615|emb|CAN72389.1| hypothetical protein VITISV_040417 [Vitis vinifera] gi|297743958|emb|CBI36928.3| unnamed protein product [Vitis vinifera]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 257/294 (87%), Positives = 278/294 (94%), Gaps = 2/294 (0%)

Query: 1   MAHRR-ARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQ 59
           MA+RR A LLFLLC L  A+  IAGKSYY+VLQVP+GASDEQIKRAYRKLALKYHPDKNQ
Sbjct: 1   MANRRIAILLFLLCGLASAITSIAGKSYYDVLQVPKGASDEQIKRAYRKLALKYHPDKNQ 60

Query: 60  GNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSF 119
           GNEEANK+FAEINNAYEVLSD+E RNIYD YGEEGLKQHAA GGRGGG  +NIQDIFSSF
Sbjct: 61  GNEEANKKFAEINNAYEVLSDNEKRNIYDRYGEEGLKQHAASGGRGGGG-MNIQDIFSSF 119

Query: 120 FGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVY 179
           FGGGP EE+E+IV+GDDVIVELDATLEDLYMGGSLKVWREKNV+KPAPGKRRCNCRNEVY
Sbjct: 120 FGGGPAEEEERIVRGDDVIVELDATLEDLYMGGSLKVWREKNVLKPAPGKRRCNCRNEVY 179

Query: 180 HKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEP 239
           HKQIGPGMFQQMTEQVC+QC NVKYEREGYF+TVDIEKGMQDGQEVVFY+DGEP +DGEP
Sbjct: 180 HKQIGPGMFQQMTEQVCEQCPNVKYEREGYFITVDIEKGMQDGQEVVFYDDGEPIVDGEP 239

Query: 240 GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           GDLKFRIRTAPHD+FRREGN+LHTTVT+TLVQALVGFEKTI+HLDEHLV+I +K
Sbjct: 240 GDLKFRIRTAPHDQFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVNIGSK 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064488|ref|XP_002301501.1| predicted protein [Populus trichocarpa] gi|222843227|gb|EEE80774.1| predicted protein [Populus trichocarpa]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 256/290 (88%), Positives = 272/290 (93%), Gaps = 3/290 (1%)

Query: 7   RLLFLLCALC---YALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEE 63
           +LLFLLC +    YAL  IAGKSYYEVLQVP+GASDEQIKRAYRKLALKYHPDKNQGNEE
Sbjct: 4   KLLFLLCVVALSHYALVAIAGKSYYEVLQVPKGASDEQIKRAYRKLALKYHPDKNQGNEE 63

Query: 64  ANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGG 123
           AN RFAEI+NAYEVLSDSE RNIYD +GEEGLKQH A GGRGGG G+N QDIFS FFGGG
Sbjct: 64  ANLRFAEISNAYEVLSDSEKRNIYDRHGEEGLKQHMASGGRGGGGGMNFQDIFSQFFGGG 123

Query: 124 PMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQI 183
            MEE+EKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQI
Sbjct: 124 QMEEEEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQI 183

Query: 184 GPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLK 243
           GPGMFQQMTEQVC+QCQNVK+EREGYF+TVDIEKGMQDGQEVVFYEDGEP IDGEPGDLK
Sbjct: 184 GPGMFQQMTEQVCEQCQNVKHEREGYFLTVDIEKGMQDGQEVVFYEDGEPIIDGEPGDLK 243

Query: 244 FRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           FRIRTAPHD FRREGN+LHTTVT+TLVQALVGF+KT++HLDEHLVDIS+K
Sbjct: 244 FRIRTAPHDVFRREGNDLHTTVTITLVQALVGFKKTVKHLDEHLVDISSK 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131018|ref|XP_002320981.1| predicted protein [Populus trichocarpa] gi|118486904|gb|ABK95286.1| unknown [Populus trichocarpa] gi|222861754|gb|EEE99296.1| predicted protein [Populus trichocarpa]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/293 (88%), Positives = 271/293 (92%), Gaps = 2/293 (0%)

Query: 3   HRRARLLFLLCALC--YALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG 60
           HRR++LL LLC     YA+  IAGKSYYEVLQVP+GASDEQIK+AYRKLALKYHPDKNQG
Sbjct: 5   HRRSKLLLLLCVALSYYAIIAIAGKSYYEVLQVPKGASDEQIKKAYRKLALKYHPDKNQG 64

Query: 61  NEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFF 120
           NEEAN RFAEINNAYEVLSDSE RNIYD YGEEGLKQH A GGRGGG G+N QDIFS FF
Sbjct: 65  NEEANLRFAEINNAYEVLSDSEKRNIYDRYGEEGLKQHMASGGRGGGGGMNFQDIFSQFF 124

Query: 121 GGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYH 180
           GGG MEE+EKI +GDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYH
Sbjct: 125 GGGSMEEEEKIARGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYH 184

Query: 181 KQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPG 240
           KQIGPGMFQQMTEQVC+QCQNVKYEREGYF+TVDIEKGMQDGQEVVFYEDGEP IDGEPG
Sbjct: 185 KQIGPGMFQQMTEQVCEQCQNVKYEREGYFLTVDIEKGMQDGQEVVFYEDGEPIIDGEPG 244

Query: 241 DLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           DLKFRIRTAPHD FRREGN+LHTTVT+TLVQALV FEK IEHLDEHLVDIS+K
Sbjct: 245 DLKFRIRTAPHDIFRREGNDLHTTVTITLVQALVSFEKNIEHLDEHLVDISSK 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548499|ref|XP_002515306.1| Chaperone protein dnaJ, putative [Ricinus communis] gi|223545786|gb|EEF47290.1| Chaperone protein dnaJ, putative [Ricinus communis]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/293 (89%), Positives = 278/293 (94%)

Query: 1   MAHRRARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG 60
           MA+R+A+LLFLLCAL Y L+VI+ KSYY+VLQVP+ ASDEQIKRAYRKLALKYHPDKN G
Sbjct: 1   MAYRKAKLLFLLCALSYVLSVISAKSYYDVLQVPKSASDEQIKRAYRKLALKYHPDKNPG 60

Query: 61  NEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFF 120
           NEEANKRFAEINNAYEVLSDSE RNIYD YGEEG+KQH AGGGRGGGMG+NIQD+FS F 
Sbjct: 61  NEEANKRFAEINNAYEVLSDSEKRNIYDRYGEEGIKQHMAGGGRGGGMGMNIQDLFSFFG 120

Query: 121 GGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYH 180
           GGG MEE+EKIVKGDDVIV+LDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYH
Sbjct: 121 GGGSMEEEEKIVKGDDVIVDLDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYH 180

Query: 181 KQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPG 240
           KQIGPGMFQQMTEQVC+QCQNVK+EREGYFVTVDIEKGMQDGQEVVFYEDGEP IDGEPG
Sbjct: 181 KQIGPGMFQQMTEQVCEQCQNVKFEREGYFVTVDIEKGMQDGQEVVFYEDGEPIIDGEPG 240

Query: 241 DLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           DLKFRIRTA HDRFRREGN+L TTVT+TLVQALVGFEKTI+HLDEHLVDI TK
Sbjct: 241 DLKFRIRTAAHDRFRREGNDLRTTVTITLVQALVGFEKTIKHLDEHLVDIGTK 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436439|ref|XP_004136000.1| PREDICTED: dnaJ homolog subfamily B member 11-like [Cucumis sativus] gi|449507850|ref|XP_004163147.1| PREDICTED: dnaJ homolog subfamily B member 11-like [Cucumis sativus]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/294 (83%), Positives = 270/294 (91%), Gaps = 3/294 (1%)

Query: 1   MAHRRARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG 60
           MAHRR +LLF++CALCY L+ IAGKSYY++LQV +GASD+QIKRAYRKLALKYHPDKNQG
Sbjct: 1   MAHRRTKLLFVVCALCYVLSAIAGKSYYDILQVQKGASDDQIKRAYRKLALKYHPDKNQG 60

Query: 61  NEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFF 120
           NEEANKRFAEI+NAYEVLSD E RNIYD YGEEGLKQHAA GGRGGGM  NIQDIFS FF
Sbjct: 61  NEEANKRFAEISNAYEVLSDGEKRNIYDRYGEEGLKQHAASGGRGGGM--NIQDIFSQFF 118

Query: 121 GGGPMEEDE-KIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVY 179
           GGG   E+E KI KGDDVIVELDA+LEDLYMGGSL+VWREKN++KPAPGKRRCNCRNEVY
Sbjct: 119 GGGGGMEEEEKIPKGDDVIVELDASLEDLYMGGSLRVWREKNILKPAPGKRRCNCRNEVY 178

Query: 180 HKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEP 239
           HKQIGPGMFQQMTEQVC+QC NVK+EREGYFVTVDIEKGMQDGQEV FYEDGEP IDGE 
Sbjct: 179 HKQIGPGMFQQMTEQVCEQCPNVKFEREGYFVTVDIEKGMQDGQEVTFYEDGEPMIDGEA 238

Query: 240 GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           GDL+FRI TAPHD FRR+GN+LH T+T+TLVQALVGFEK+++HLDEHLV+I TK
Sbjct: 239 GDLRFRIHTAPHDVFRRDGNDLHATITITLVQALVGFEKSLKHLDEHLVEIGTK 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821166|ref|XP_002878466.1| DNAJ heat shock family protein [Arabidopsis lyrata subsp. lyrata] gi|297324304|gb|EFH54725.1| DNAJ heat shock family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/294 (80%), Positives = 268/294 (91%), Gaps = 1/294 (0%)

Query: 1   MAHRRARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG 60
           MA R + L  +L AL YA+ V+AGKSYY+VLQVP+GASDEQIKRAYRKLALKYHPDKNQG
Sbjct: 1   MAIRWSELCIVLFALSYAICVLAGKSYYDVLQVPKGASDEQIKRAYRKLALKYHPDKNQG 60

Query: 61  NEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMG-VNIQDIFSSF 119
           NEEA ++FAEINNAYEVLSD E R IY+ YGEEGLKQ +A GGRGGG G +N+QDIFSSF
Sbjct: 61  NEEATRKFAEINNAYEVLSDEEKREIYNKYGEEGLKQFSANGGRGGGGGGMNMQDIFSSF 120

Query: 120 FGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVY 179
           FGGG MEE+EK+VKGDDVIVEL+ATLEDLYMGGS+KVWREKNVIKPAPGKR+CNCRNEVY
Sbjct: 121 FGGGSMEEEEKVVKGDDVIVELEATLEDLYMGGSIKVWREKNVIKPAPGKRKCNCRNEVY 180

Query: 180 HKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEP 239
           H+QIGPGMFQQMTEQVCD+C NVKYEREGYFVTVDIEKGM+DG+EV FYEDGEP +DGEP
Sbjct: 181 HRQIGPGMFQQMTEQVCDKCPNVKYEREGYFVTVDIEKGMKDGEEVSFYEDGEPILDGEP 240

Query: 240 GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           GDLKFRIRTAPH RFRR+GN+LH TV +TLV+ALVGFEK+ +HLD+H VDIS+K
Sbjct: 241 GDLKFRIRTAPHARFRRDGNDLHMTVNITLVEALVGFEKSFKHLDDHEVDISSK 294

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501879|ref|XP_003519751.1| PREDICTED: dnaJ homolog subfamily B member 11-like [Glycine max]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 245/294 (83%), Positives = 270/294 (91%), Gaps = 1/294 (0%)

Query: 1   MAHRRARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG 60
           MA  RA LLFLL  LCY+L  IAGKSYY+VL++P+GAS+EQIKRAYRKLALKYHPDKN G
Sbjct: 1   MASPRANLLFLLWLLCYSLYAIAGKSYYDVLEIPKGASEEQIKRAYRKLALKYHPDKNPG 60

Query: 61  NEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGV-NIQDIFSSF 119
           N+EANKRFAEINNAYEVLSDSE R+IYD YGEEGLKQHAAGGGRGGG      QDIF+SF
Sbjct: 61  NQEANKRFAEINNAYEVLSDSERRSIYDRYGEEGLKQHAAGGGRGGGGMGMEFQDIFASF 120

Query: 120 FGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVY 179
           FGGGPMEE+E+IVKGDDV+VELDATLEDLYMGGSLKVWREKNV+KPA GKR CNCRNE+Y
Sbjct: 121 FGGGPMEEEERIVKGDDVLVELDATLEDLYMGGSLKVWREKNVLKPASGKRLCNCRNELY 180

Query: 180 HKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEP 239
           HKQIGPGMFQQ TEQVCD+C NVKYER+G+F+TVDIEKGMQDGQEV+F+EDGEP IDGE 
Sbjct: 181 HKQIGPGMFQQFTEQVCDKCPNVKYERDGHFITVDIEKGMQDGQEVLFFEDGEPIIDGES 240

Query: 240 GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           GDL+ RIRTAPHD FRREGN+LHTTVT+TLVQALVGFEKT++HLDEHLVDISTK
Sbjct: 241 GDLRIRIRTAPHDLFRREGNDLHTTVTITLVQALVGFEKTVKHLDEHLVDISTK 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511325|ref|XP_003625951.1| DnaJ homolog subfamily B member [Medicago truncatula] gi|355500966|gb|AES82169.1| DnaJ homolog subfamily B member [Medicago truncatula] gi|388502852|gb|AFK39492.1| unknown [Medicago truncatula]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/294 (85%), Positives = 277/294 (94%), Gaps = 3/294 (1%)

Query: 1   MAHRRARLLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG 60
           MAH+RA+LL LLCALCY+L+ IA KSYY++LQV +GASD+QIKRAYRKLALKYHPDKN G
Sbjct: 1   MAHQRAKLLLLLCALCYSLSAIAVKSYYDILQVSKGASDDQIKRAYRKLALKYHPDKNPG 60

Query: 61  NEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFF 120
           NEEANK+FAEI+NAYEVLSD+E RNIYD YGEEGLKQHAAGGGRGGGM  N+QDIF+SFF
Sbjct: 61  NEEANKKFAEISNAYEVLSDNEKRNIYDKYGEEGLKQHAAGGGRGGGM--NMQDIFNSFF 118

Query: 121 GGGPMEEDE-KIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVY 179
           GGG MEE+E KI KGDDVIV+LDATLEDLYMGGSLKVWREKNV+KPAPGKRRCNCRNEVY
Sbjct: 119 GGGSMEEEEEKIAKGDDVIVDLDATLEDLYMGGSLKVWREKNVVKPAPGKRRCNCRNEVY 178

Query: 180 HKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEP 239
           H+QIGPGMFQQMTEQVCDQC NVKY REGYFVTVDIEKGM+DGQEV+FYEDGEP IDGE 
Sbjct: 179 HRQIGPGMFQQMTEQVCDQCANVKYVREGYFVTVDIEKGMKDGQEVLFYEDGEPIIDGES 238

Query: 240 GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           GDL+FRIRTAPH+ F+REGN+LHTTVT+TLVQALVGFEKTI+HLDEHLVDIS+K
Sbjct: 239 GDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISSK 292

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2081725	346	ATERDJ3B [Arabidopsis thaliana	0.861	0.789	0.770	6.4e-115
RGD|1307373	358	Dnajb11 "DnaJ (Hsp40) homolog,	0.845	0.748	0.477	2.9e-64
UNIPROTKB|Q9UBS4	358	DNAJB11 "DnaJ homolog subfamil	0.845	0.748	0.477	3.7e-64
MGI|MGI:1915088	358	Dnajb11 "DnaJ (Hsp40) homolog,	0.845	0.748	0.477	4.7e-64
UNIPROTKB|Q3ZBA6	358	DNAJB11 "DnaJ homolog subfamil	0.845	0.748	0.474	9.7e-64
UNIPROTKB|F1SFJ8	358	DNAJB11 "Uncharacterized prote	0.845	0.748	0.474	1.2e-63
UNIPROTKB|P81999	358	DNAJB11 "DnaJ homolog subfamil	0.842	0.745	0.472	3.3e-63
UNIPROTKB|F1NVY5	364	DNAJB11 "Uncharacterized prote	0.839	0.730	0.459	1e-61
UNIPROTKB|F1PXX5	358	DNAJB11 "DnaJ homolog subfamil	0.832	0.737	0.466	1e-61
ZFIN|ZDB-GENE-031113-9	360	dnajb11 "DnaJ (Hsp40) homolog,	0.842	0.741	0.453	2.7e-59

TAIR|locus:2081725 ATERDJ3B [Arabidopsis thaliana (taxid:3702)]

 Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
 Identities = 211/274 (77%), Positives = 237/274 (86%)

Query:    21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80
             V+AGKSYY+VLQVP+GASDEQIKRAYRKLALKYHPDKNQGNEEA ++FAEINNAYEVLSD
Sbjct:    21 VLAGKSYYDVLQVPKGASDEQIKRAYRKLALKYHPDKNQGNEEATRKFAEINNAYEVLSD 80

Query:    81 SETRNIYDTYGEEGLKQHAAXXXXXXXXX-VNIQDIFSSFFGGGPMEEDEKIVKGDDVIV 139
              E R IY+ YGEEGLKQ +A          +N+QDIFSSFFGGG MEE+EK+VKGDDVIV
Sbjct:    81 EEKREIYNKYGEEGLKQFSANGGRGGGGGGMNMQDIFSSFFGGGSMEEEEKVVKGDDVIV 140

Query:   140 ELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQC 199
             EL+ATLEDLYMGGS+KVWREKNVIKPAPGKR+CNCRNEVYH+QIGPGMFQQMTEQVCD+C
Sbjct:   141 ELEATLEDLYMGGSMKVWREKNVIKPAPGKRKCNCRNEVYHRQIGPGMFQQMTEQVCDKC 200

Query:   200 QNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGN 259
              NVKYEREGYFVTVDIEKGM+DG+EV FYEDGEP +DG+PGDLKFRIRTAPH RFRR+GN
Sbjct:   201 PNVKYEREGYFVTVDIEKGMKDGEEVSFYEDGEPILDGDPGDLKFRIRTAPHARFRRDGN 260

Query:   260 NXXXXXXXXXXXXXXGFEKTIEHLDEHLVDISTK 293
             +              GFEK+ +HLD+H VDIS+K
Sbjct:   261 DLHMNVNITLVEALVGFEKSFKHLDDHEVDISSK 294

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS;RCA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005788 "endoplasmic reticulum lumen" evidence=IDA

GO:0052033 "pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response" evidence=IMP

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

RGD|1307373 Dnajb11 "DnaJ (Hsp40) homolog, subfamily B, member 11" [Rattus norvegicus (taxid:10116)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 130/272 (47%), Positives = 170/272 (62%)

Query:    21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80
             VIAG+ +Y++L VPR AS + IK+AYRKLAL+ HPD+N  + +A ++F ++  AYEVLSD
Sbjct:    20 VIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSD 79

Query:    81 SETRNIYDTYGEEGLKQ-HAAXXXXXXXXXVNIQDIFSSFFGGGPMEEDEKIVKGDDVIV 139
             SE R  YDTYGEEGLK  H +             D F   FGG P ++D  I +G D+IV
Sbjct:    80 SEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFG--D-FGFMFGGAPRQQDRNIPRGSDIIV 136

Query:   140 ELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQC 199
             +L+ TLE++Y G  ++V R K V + APGKR+CNCR E+   Q+GPG FQ   E VCD+C
Sbjct:   137 DLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDEC 196

Query:   200 QNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGN 259
              NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL+FRI+   H  F R G+
Sbjct:   197 PNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHRIFERRGD 256

Query:   260 NXXXXXXXXXXXXXXGFEKTIEHLDEHLVDIS 291
             +              GFE  I HLD H V IS
Sbjct:   257 DLYTNVTVSLVEALVGFEMDITHLDGHKVHIS 288

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016556 "mRNA modification" evidence=IEA;ISO

GO:0051082 "unfolded protein binding" evidence=IEA;ISO

UNIPROTKB|Q9UBS4 DNAJB11 "DnaJ homolog subfamily B member 11" [Homo sapiens (taxid:9606)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 130/272 (47%), Positives = 170/272 (62%)

Query:    21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80
             VIAG+ +Y++L VPR AS + IK+AYRKLAL+ HPD+N  + +A ++F ++  AYEVLSD
Sbjct:    20 VIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSD 79

Query:    81 SETRNIYDTYGEEGLKQ-HAAXXXXXXXXXVNIQDIFSSFFGGGPMEEDEKIVKGDDVIV 139
             SE R  YDTYGEEGLK  H +             D F   FGG P ++D  I +G D+IV
Sbjct:    80 SEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFG--D-FGFMFGGTPRQQDRNIPRGSDIIV 136

Query:   140 ELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQC 199
             +L+ TLE++Y G  ++V R K V + APGKR+CNCR E+   Q+GPG FQ   E VCD+C
Sbjct:   137 DLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDEC 196

Query:   200 QNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGN 259
              NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL+FRI+   H  F R G+
Sbjct:   197 PNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGD 256

Query:   260 NXXXXXXXXXXXXXXGFEKTIEHLDEHLVDIS 291
             +              GFE  I HLD H V IS
Sbjct:   257 DLYTNVTISLVESLVGFEMDITHLDGHKVHIS 288

GO:0006457 "protein folding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016556 "mRNA modification" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

MGI|MGI:1915088 Dnajb11 "DnaJ (Hsp40) homolog, subfamily B, member 11" [Mus musculus (taxid:10090)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 130/272 (47%), Positives = 170/272 (62%)

Query:    21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80
             VIAG+ +Y++L VPR AS + IK+AYRKLAL+ HPD+N  + +A ++F ++  AYEVLSD
Sbjct:    20 VIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSD 79

Query:    81 SETRNIYDTYGEEGLKQ-HAAXXXXXXXXXVNIQDIFSSFFGGGPMEEDEKIVKGDDVIV 139
             SE R  YDTYGEEGLK  H +             D F   FGG P ++D  I +G D+IV
Sbjct:    80 SEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFG--D-FGFMFGGTPRQQDRNIPRGSDIIV 136

Query:   140 ELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQC 199
             +L+ TLE++Y G  ++V R K V + APGKR+CNCR E+   Q+GPG FQ   E VCD+C
Sbjct:   137 DLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDEC 196

Query:   200 QNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGN 259
              NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL+FRI+   H  F R G+
Sbjct:   197 PNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHRIFERRGD 256

Query:   260 NXXXXXXXXXXXXXXGFEKTIEHLDEHLVDIS 291
             +              GFE  I HLD H V IS
Sbjct:   257 DLYTNVTVSLVEALVGFEMDITHLDGHKVHIS 288

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016556 "mRNA modification" evidence=ISO;IDA

GO:0051082 "unfolded protein binding" evidence=IDA

UNIPROTKB|Q3ZBA6 DNAJB11 "DnaJ homolog subfamily B member 11" [Bos taurus (taxid:9913)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 129/272 (47%), Positives = 169/272 (62%)

Query:    21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80
             VIAG+ +Y++L VPR AS + IK+AYRKLAL+ HPD+N  +  A ++F ++  AYEVLSD
Sbjct:    20 VIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPRAQEKFQDLGAAYEVLSD 79

Query:    81 SETRNIYDTYGEEGLKQ-HAAXXXXXXXXXVNIQDIFSSFFGGGPMEEDEKIVKGDDVIV 139
             SE R  YDTYGEEGLK  H +             D F   FGG P ++D  I +G D+IV
Sbjct:    80 SEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFG--D-FGFMFGGTPRQQDRNIPRGSDIIV 136

Query:   140 ELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQC 199
             +L+ TLE++Y G  ++V R K V + APGKR+CNCR E+   Q+GPG FQ   E VCD+C
Sbjct:   137 DLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDEC 196

Query:   200 QNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGN 259
              NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL+FRI+   H  F R G+
Sbjct:   197 PNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHSIFERRGD 256

Query:   260 NXXXXXXXXXXXXXXGFEKTIEHLDEHLVDIS 291
             +              GF+  I HLD H V IS
Sbjct:   257 DLYTNVTISLVESLVGFDMDITHLDGHKVHIS 288

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016556 "mRNA modification" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1SFJ8 DNAJB11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 129/272 (47%), Positives = 169/272 (62%)

Query:    21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80
             VIAG+ +Y++L VPR AS + IK+AYRKLAL+ HPD+N  +  A ++F ++  AYEVLSD
Sbjct:    20 VIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPRAQEKFQDLGAAYEVLSD 79

Query:    81 SETRNIYDTYGEEGLKQ-HAAXXXXXXXXXVNIQDIFSSFFGGGPMEEDEKIVKGDDVIV 139
             SE R  YDTYGEEGLK  H +             D F   FGG P ++D  I +G D+IV
Sbjct:    80 SEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFG--D-FGFMFGGTPRQQDRNIPRGSDIIV 136

Query:   140 ELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQC 199
             +L+ TLE++Y G  ++V R K V + APGKR+CNCR E+   Q+GPG FQ   E VCD+C
Sbjct:   137 DLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDEC 196

Query:   200 QNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGN 259
              NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL+FRI+   H  F R G+
Sbjct:   197 PNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGD 256

Query:   260 NXXXXXXXXXXXXXXGFEKTIEHLDEHLVDIS 291
             +              GF+  I HLD H V IS
Sbjct:   257 DLYTNVTISLVESLVGFDMDITHLDGHKVHIS 288

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016556 "mRNA modification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|P81999 DNAJB11 "DnaJ homolog subfamily B member 11" [Canis lupus familiaris (taxid:9615)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 128/271 (47%), Positives = 168/271 (61%)

Query:    22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDS 81
             IAG+ +Y++L VPR AS + IK+AYRKLAL+ HPD+N  +  A ++F ++  AYEVLSDS
Sbjct:    21 IAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPRAQEKFQDLGAAYEVLSDS 80

Query:    82 ETRNIYDTYGEEGLKQ-HAAXXXXXXXXXVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVE 140
             E R  YDTYGEEGLK  H +             D F   FGG P ++D  I +G D+IV+
Sbjct:    81 EKRKQYDTYGEEGLKDGHQSSHGDIFSHFFG--D-FGFMFGGTPRQQDRNIPRGSDIIVD 137

Query:   141 LDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQ 200
             L+ TLE++Y G  ++V R K V + APGKR+CNCR E+   Q+GPG FQ   E VCD+C 
Sbjct:   138 LEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECP 197

Query:   201 NVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNN 260
             NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL+FRI+   H  F R G++
Sbjct:   198 NVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDD 257

Query:   261 XXXXXXXXXXXXXXGFEKTIEHLDEHLVDIS 291
                           GF+  I HLD H V IS
Sbjct:   258 LYTNVTISLVESLVGFDMDITHLDGHKVHIS 288

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NVY5 DNAJB11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 124/270 (45%), Positives = 165/270 (61%)

Query:    23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
             AG+ +Y++L V RGAS + IK+AYRKLAL+ HPD+N  +  A ++F ++  AYEVLSD E
Sbjct:    28 AGRDFYKILGVSRGASVKDIKKAYRKLALQLHPDRNPDDPRAQEKFQDLGAAYEVLSDEE 87

Query:    83 TRNIYDTYGEEGLKQ-HAAXXXXXXXXXVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVEL 141
              R  YD YGEEGLK  H +             D F   FGG P ++D  I +G D+IV+L
Sbjct:    88 KRKQYDAYGEEGLKDGHQSSHGDIFSHFFG--D-FGFMFGGNPRQQDRNIPRGSDIIVDL 144

Query:   142 DATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQN 201
             + TLE++Y G  ++V R K V + APGKR+CNCR E+   Q+GPG FQ   E VCD+C N
Sbjct:   145 EVTLEEVYSGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPN 204

Query:   202 VKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNX 261
             VK   E   + V+IE G++DG E  F  +GEP +DGEPGDL+FRI+   H  F R G++ 
Sbjct:   205 VKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVLKHPVFERRGDDL 264

Query:   262 XXXXXXXXXXXXXGFEKTIEHLDEHLVDIS 291
                          GFE  I HLD H V ++
Sbjct:   265 YTNVTISLVEALTGFEMDITHLDGHKVHVA 294

GO:0006457 "protein folding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016556 "mRNA modification" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|F1PXX5 DNAJB11 "DnaJ homolog subfamily B member 11" [Canis lupus familiaris (taxid:9615)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 125/268 (46%), Positives = 165/268 (61%)

Query:    25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
             + +Y++L VPR AS + IK+AYRKLAL+ HPD+N  +  A ++F ++  AYEVLSDSE R
Sbjct:    24 RDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPRAQEKFQDLGAAYEVLSDSEKR 83

Query:    85 NIYDTYGEEGLKQ-HAAXXXXXXXXXVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDA 143
               YDTYGEEGLK  H +             D F   FGG P ++D  I +G D+IV+L+ 
Sbjct:    84 KQYDTYGEEGLKDGHQSSHGDIFSHFFG--D-FGFMFGGTPRQQDRNIPRGSDIIVDLEV 140

Query:   144 TLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVK 203
             TLE++Y G  ++V R K V + APGKR+CNCR E+   Q+GPG FQ   E VCD+C NVK
Sbjct:   141 TLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVK 200

Query:   204 YEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNXXX 263
                E   + V+IE G++DG E  F  +GEP +DGEPGDL+FRI+   H  F R G++   
Sbjct:   201 LVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYT 260

Query:   264 XXXXXXXXXXXGFEKTIEHLDEHLVDIS 291
                        GF+  I HLD H V IS
Sbjct:   261 NVTISLVESLVGFDMDITHLDGHKVHIS 288

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-031113-9 dnajb11 "DnaJ (Hsp40) homolog, subfamily B, member 11" [Danio rerio (taxid:7955)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 123/271 (45%), Positives = 163/271 (60%)

Query:    21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80
             V AG+ +Y++L V R AS + IK+AYRKLAL+ HPD+NQ +  A  +FA++  AYEVLSD
Sbjct:    22 VFAGRDFYKILGVSRSASVKDIKKAYRKLALQLHPDRNQDDPNAQDKFADLGAAYEVLSD 81

Query:    81 SETRNIYDTYGEEGLKQ-HAAXXXXXXXXXVNIQDIFSSFFGGGPMEEDEKIVKGDDVIV 139
              E R  YD YGEEGLK+ H +             D F   FGG        I +G+D+++
Sbjct:    82 EEKRKQYDAYGEEGLKEGHQSSHGDIFSSFFG--D-FGFMFGGSRQPAGRDIPRGNDIVL 138

Query:   140 ELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQC 199
             +L+ TLE++Y G  ++V R K V K APGKR+CNCR E+   Q+GPG FQ   E VCD+C
Sbjct:   139 DLEVTLEEVYSGNFVEVVRIKPVAKEAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDEC 198

Query:   200 QNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGN 259
              N+K   E   + V+IE+G++D  E  F  +GEP IDGEPGDL+FRI+   H  F R G+
Sbjct:   199 PNIKLVNEERTLEVEIEQGVRDEMEYPFIGEGEPHIDGEPGDLRFRIKVLKHPVFERRGD 258

Query:   260 NXXXXXXXXXXXXXXGFEKTIEHLDEHLVDI 290
             +              GFE  I HLD H V I
Sbjct:   259 DLYTNVTISLVEALVGFEVDITHLDGHKVHI 289

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99KV1	DJB11_MOUSE	No assigned EC number	0.5034	0.8580	0.7597	yes	no
Q6TUG0	DJB11_RAT	No assigned EC number	0.5034	0.8580	0.7597	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028084001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_42, whole genome shotgun sequence); (345 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00006855001	SubName- Full=Chromosome undetermined scaffold_178, whole genome shotgun sequence; (899 aa)			•			•			0.871
	GSVIVG00032542001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (895 aa)			•			•			0.869
	GSVIVG00006252001	SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (392 aa)						•			0.800
	GSVIVG00017185001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)			•						0.483
	GSVIVG00005738001	SubName- Full=Chromosome chr3 scaffold_157, whole genome shotgun sequence; (626 aa)			•						0.481
	GSVIVG00004141001	SubName- Full=Chromosome undetermined scaffold_611, whole genome shotgun sequence; (468 aa)			•						0.480
	GSVIVG00012517001	SubName- Full=Chromosome undetermined scaffold_388, whole genome shotgun sequence; Flags- Fragm [...] (372 aa)			•						0.478
	GSVIVG00017724001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)			•						0.476
	GSVIVG00037232001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (658 aa)			•						0.475
	GSVIVG00006687001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (667 aa)			•						0.475

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-75
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	2e-60
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-53
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-52
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	5e-51
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	2e-49
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-45
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	8e-45
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	2e-44
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	7e-44
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	2e-41
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	1e-40
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	1e-38
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	6e-38
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	4e-37
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	4e-37
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-36
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	4e-36
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	4e-36
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	7e-35
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	4e-34
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	6e-33
pfam00226	63	pfam00226, DnaJ, DnaJ domain	1e-32
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-32
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	4e-32
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	1e-31
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	3e-29
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	7e-29
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	1e-28
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	4e-28
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-27
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	5e-27
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	1e-26
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	1e-26
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	2e-23
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	7e-21
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	8e-21
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	3e-14
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	9e-08
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	5e-07
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	9e-06
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	1e-05
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	2e-05
PRK01356	166	PRK01356, hscB, co-chaperone HscB; Provisional	3e-05
PHA03102	153	PHA03102, PHA03102, Small T antigen; Reviewed	2e-04
PHA02624	647	PHA02624, PHA02624, large T antigen; Provisional	8e-04
PTZ00100	116	PTZ00100, PTZ00100, DnaJ chaperone protein; Provis	0.002

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  235 bits (603), Expect = 1e-75
 Identities = 96/288 (33%), Positives = 141/288 (48%), Gaps = 26/288 (9%)

Query: 23  AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
           A + YYE+L V + AS+E+IK+AYRKLA KYHPD+N G++EA ++F EIN AYEVLSD E
Sbjct: 2   AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPE 61

Query: 83  TRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEK--IVKGDDVIVE 140
            R  YD +G  G K    GG   GG G +  DIF  FFGGG           +G D+   
Sbjct: 62  KRAAYDQFGHAGFKAGGFGGFGFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYN 121

Query: 141 LDATLEDLYMGGSLKVWREKNVI---------KPAPGKRRC-NCR-NEVYHKQIGPGMFQ 189
           L+ TLE+   G   ++   ++V          KP    + C  C  +         G F 
Sbjct: 122 LEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFS 181

Query: 190 QMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDG 237
                          +  C +C+     ++   ++V+I  G+ DG  +    +GE   +G
Sbjct: 182 FQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNG 241

Query: 238 -EPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLD 284
              GDL   +   PH  F R+G++L+  V ++  +A +G E  +  LD
Sbjct: 242 GPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLD 289

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  196 bits (501), Expect = 2e-60
 Identities = 102/295 (34%), Positives = 142/295 (48%), Gaps = 39/295 (13%)

Query: 26  SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRN 85
            YYE+L V + AS+E+IK+AYRKLA KYHPD+N+ ++EA ++F EIN AYEVLSD E R 
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRA 59

Query: 86  IYDTYGEEGLKQHAAGGGRGGGMGVN-----IQDIFSSFFGGGP---MEEDEKIVKGDDV 137
            YD +G  G      GGG G             DIF  FFGGG            +G+D+
Sbjct: 60  QYDQFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDL 119

Query: 138 IVELDATLEDLYMG--GSLKVWREKNV-------IKPAPGKRRC-NC--RNEVYHKQIGP 185
             +L+ T E+   G    +++ R+++         KP    + C  C    +V  +Q  P
Sbjct: 120 RYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTP 179

Query: 186 -GMFQQMTEQVCDQCQ--------------NVKYEREGYFVTVDIEKGMQDGQEVVFYED 230
            G FQQ  +Q C  C                    +E   +TV I  G+  GQ +     
Sbjct: 180 FGFFQQ--QQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGK 237

Query: 231 GEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLD 284
           G      G  GDL   IR  PH  F R+GN+L+  V ++  QA++G E  +  LD
Sbjct: 238 GNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLD 292

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  179 bits (456), Expect = 1e-53
 Identities = 99/295 (33%), Positives = 136/295 (46%), Gaps = 50/295 (16%)

Query: 23  AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
           A + YYEVL V R AS+++IK+AYRKLA+KYHPD+N G++EA ++F EI  AYEVLSD +
Sbjct: 2   AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQ 61

Query: 83  TRNIYDTYGEEGLKQHAAGGGRGGGMGVN--IQDIFSSFFGGGPMEEDEKIVKGDDVIVE 140
            R  YD YG    +Q   GGG GGG G      DIF   FGGG     ++  +G D+   
Sbjct: 62  KRAAYDQYGHAAFEQGGGGGGFGGGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYN 121

Query: 141 LDATLEDLYMGGSLKVWREKNVIKPA-------------PGKRRCNCRNEVYHKQIGPGM 187
           ++ TLE+   G        K +  P              PG     C       Q+    
Sbjct: 122 MEITLEEAVRG------VTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVR--- 172

Query: 188 FQQ---MTEQVCDQCQ-----------------NVKYEREGYFVTVDIEKGMQDGQEVVF 227
            QQ     +Q C  C                   V+ E+    ++V I  G+  G  +  
Sbjct: 173 MQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKT---LSVKIPAGVDTGDRIRL 229

Query: 228 YEDGEPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIE 281
             +GE    G P GDL  +I    H  F R+GN+L+  V ++   A +G    IE
Sbjct: 230 SGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALG--GEIE 282

Length = 371

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score =  177 bits (450), Expect = 2e-52
 Identities = 104/298 (34%), Positives = 154/298 (51%), Gaps = 48/298 (16%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           +  YEVL + +  +  +IK+AYRKLA+K+HPDK  G+ E   +F EI+ AYEVLSD E R
Sbjct: 28  EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG-GDPE---KFKEISRAYEVLSDPEKR 83

Query: 85  NIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDAT 144
            IYD YGEEGL+        GG    +  D+F   FGGG     +K  +G+D++  L  T
Sbjct: 84  KIYDEYGEEGLE--------GGEQPADASDLFDLIFGGGRKPGGKK--RGEDIVSHLKVT 133

Query: 145 LEDLYMGGSLKVWREKNVI--------KPAPGKRRCNCRN----EVYHKQIGPGMFQQMT 192
           LE +Y G   K+   K+VI         P      C   N     V  +Q+G  M  Q T
Sbjct: 134 LEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGS-MIHQ-T 191

Query: 193 EQVC-------------DQCQN-----VKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPK 234
           +  C              +C+N     VK  R+   + V+I+KG+ +  ++ F+ + + K
Sbjct: 192 QSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRK--ILEVNIDKGVPNQHKITFHGEADEK 249

Query: 235 IDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIST 292
            +  PG++ F +   PHD F+REG +L  T  ++L +AL GF   I HLD   + ++T
Sbjct: 250 PNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNT 307

Length = 421

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score =  173 bits (439), Expect = 5e-51
 Identities = 100/305 (32%), Positives = 145/305 (47%), Gaps = 50/305 (16%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           K YYE+L V R A++E+IK+AYR+LA KYHPD N G++EA ++F EIN AYE+LSD + R
Sbjct: 5   KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKR 64

Query: 85  NIYDTYGEEGLKQHAAGGG--------------RGGGMGVNIQDIFSSFFGGGPMEEDEK 130
             YD +G         G G                GG G   +DIF  FFG G    +  
Sbjct: 65  AQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETG 124

Query: 131 IVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPA-------PGKR-----RCNCRNEV 178
             KG D+  +L+ T E+   G   ++  E+             PG +      C+   +V
Sbjct: 125 PQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQV 184

Query: 179 YHKQIGPGMFQQMTE-QVCDQCQ-----------------NVKYEREGYFVTVDIEKGMQ 220
             +Q  P  F ++   + CD+C                   ++  R+   + V+I  G+ 
Sbjct: 185 RTRQNTP--FGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRK---IKVNIPAGID 239

Query: 221 DGQEVVFYEDGEPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKT 279
           DGQ +    +GEP I G P GDL   I+  PH  F+REG N++  + +T   A +G E  
Sbjct: 240 DGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIE 299

Query: 280 IEHLD 284
           I  LD
Sbjct: 300 IPTLD 304

Length = 386

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score =  168 bits (427), Expect = 2e-49
 Identities = 106/302 (35%), Positives = 146/302 (48%), Gaps = 46/302 (15%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           + YY +L V R ASD +IKRAYRKLA + HPD N  +EEA ++F EI+ AYEVLSD E R
Sbjct: 3   RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVN-PDEEAQEKFKEISVAYEVLSDPEKR 61

Query: 85  NIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEED--EKIVKGDDVIVELD 142
            I D  G+        GGG GGG G  + D+F +FFGGG        ++  G D ++ + 
Sbjct: 62  RIVDLGGDPLESAGGGGGGFGGGFG-GLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMR 120

Query: 143 ATLEDLYMGGSLKVWREKNVI-------------KPAPGKRRCNCRNEVYHKQ---IGPG 186
             LE+   G + +V  +  V+             KP      C  R EV   Q   +G  
Sbjct: 121 LDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCD-TCGGRGEVQTVQRSFLG-- 177

Query: 187 MFQQMTEQVCDQCQN-----------------VKYEREGYFVTVDIEKGMQDGQEVVFYE 229
             Q MT + C  C+                  V+  RE   +TV I  G+ DG  +    
Sbjct: 178 --QVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARRE---ITVKIPAGVGDGMRIRLAA 232

Query: 230 DGEPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLV 288
            GE    G P GDL   +   PHD F R+G++LH TV+V +V A +G   T+E + +   
Sbjct: 233 QGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPS 292

Query: 289 DI 290
           +I
Sbjct: 293 EI 294

Length = 378

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score =  158 bits (402), Expect = 1e-45
 Identities = 97/298 (32%), Positives = 146/298 (48%), Gaps = 36/298 (12%)

Query: 22  IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDS 81
           +A K YYEVL + +GASD++IK+A+RKLA+KYHPDKN+GN+EA ++F EIN AY+VLSD 
Sbjct: 1   MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP 60

Query: 82  ETRNIYDTYGEE------GLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEK---IV 132
           + +  YD +G        G      GG     MG    DIF SFFGGG      +     
Sbjct: 61  QKKAQYDQFGTADFNGAGGFGSGGFGGFDFSDMG-GFGDIFDSFFGGGFGSSSRRRNGPQ 119

Query: 133 KGDDVIVELDATLEDLYMG--GSLKVWREKNV-------IKPAPGKR---RCNCRNEVYH 180
           +G D+   ++ T E+   G    + V R +N         KP    +   +C    ++  
Sbjct: 120 RGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRV 179

Query: 181 KQIGP-GMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVF 227
           ++  P G F   T            E  C++C      R+   + V++  G+  G  +  
Sbjct: 180 QRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPL 239

Query: 228 YEDGEP-KIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLD 284
              GE  K  G  GDL   IR APH  F+R+G +++    ++  +A +G E  +  +D
Sbjct: 240 RGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVD 297

Length = 380

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score =  156 bits (396), Expect = 8e-45
 Identities = 96/307 (31%), Positives = 145/307 (47%), Gaps = 56/307 (18%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           K YYE+L V R A+ E+IK+AYR+LA KYHPD N+ N EA ++F EIN AY+VLSD E R
Sbjct: 3   KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNK-NPEAEEKFKEINEAYQVLSDPEKR 61

Query: 85  NIYDTYGEEGLKQHAAGGGRGGGM-------GVNIQDIFSSFFG----GGPMEED----- 128
            +YD +G       +  G +  G        G NI+DI    F     G           
Sbjct: 62  KLYDQFGHAAF---SGSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRE 118

Query: 129 -----EKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVI---------KPAPGKRRC-N 173
                ++ VKG+D+   ++ +LE+ Y G ++ +   + V           P  G++ C  
Sbjct: 119 RRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPT 178

Query: 174 C--RNEVYHKQIGPGMFQQMTEQVCDQCQNVKYERE--------GYF-----VTVDIEKG 218
           C    E+Y +    G F +++ Q C  C      RE        G       + V I  G
Sbjct: 179 CGGSGEIYQR----GGFFRIS-QTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPPG 233

Query: 219 MQDGQEVVFYEDGEP-KIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFE 277
           + +G ++     G   +  G PGDL   ++  PH  F R G+NL+  V +T+ +A++G E
Sbjct: 234 VDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTE 293

Query: 278 KTIEHLD 284
             +  LD
Sbjct: 294 LEVPLLD 300

Length = 382

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score =  154 bits (392), Expect = 2e-44
 Identities = 97/297 (32%), Positives = 132/297 (44%), Gaps = 52/297 (17%)

Query: 27  YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
           YYE+L V R AS+E+IK++YRKLA+KYHPD+N G++EA + F E   AYEVLSD + R I
Sbjct: 6   YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGI 65

Query: 87  YDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSF---------FGGGPMEEDEKIV-KGDD 136
           YD YG EGL      G  G        DIFSSF         FGGG        V  G D
Sbjct: 66  YDQYGHEGLSGTGFSGFSG------FDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGAD 119

Query: 137 VIVELDATLEDLYMGGSLKVWREKNVIKP-----------APGKR-----RCNCRNEVYH 180
           +  +L     +   G      +E  + K             PG       +C    +V  
Sbjct: 120 LRYDLTLPFLEAAFG----TEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQ 175

Query: 181 KQIGPGMFQ------------QMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFY 228
            Q   G F             ++    C  C      R    V V I  G+  G  +   
Sbjct: 176 SQ---GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLR 232

Query: 229 EDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLD 284
            +GE  +  G PGDL   +   PH+ F R+GN++H  V ++ VQA +G +  +  L+
Sbjct: 233 GEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLE 289

Length = 366

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score =  153 bits (389), Expect = 7e-44
 Identities = 100/289 (34%), Positives = 142/289 (49%), Gaps = 37/289 (12%)

Query: 22  IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDS 81
           +A + YYEVL V + AS ++IK+AYRKL+ KYHPD N+  E A+++F EI+ AYEVLSD 
Sbjct: 1   MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDD 59

Query: 82  ETRNIYDTYGEEGLKQHAAGGGRGG---GMGVNIQDIFSSFFGGGPMEEDEKIV-KGDDV 137
           + R  YD +G  G  Q   GGG GG   G G   +DIFSSFFGGG    D     +G D+
Sbjct: 60  QKRAQYDQFGHAGPNQGFGGGGFGGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADL 119

Query: 138 IVELDATLEDLYMGGSLKVWREKNV---------IKPAPGKRRCN-C------------- 174
              +  T E+   G   ++   K            KP   K  C+ C             
Sbjct: 120 QYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTP 179

Query: 175 ----RNE-VYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYE 229
                N        G G   Q  ++ C  C      R+   + V I  G+ +GQ++    
Sbjct: 180 FGRVVNRQTCPHCNGTG---QEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSG 236

Query: 230 DGEPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFE 277
           +GEP ++G P GDL    R  PH+ F R+G++++  + +T  QA +G E
Sbjct: 237 EGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDE 285

Length = 376

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score =  147 bits (372), Expect = 2e-41
 Identities = 95/295 (32%), Positives = 133/295 (45%), Gaps = 42/295 (14%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           + YYEVL V R AS+++IK+AYRKLAL+YHPD+N  N EA ++F E   AYEVL D+E R
Sbjct: 4   RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKR 63

Query: 85  NIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSF---------FGGGPMEEDEKIVKGD 135
             YD +G  G+     G G  GG     +DIFS F         F GG      +   G 
Sbjct: 64  ARYDRFGHAGVN----GNGGFGGFSSA-EDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGS 118

Query: 136 DVIVELDATLEDLYMGGSLKVWREKNVIKP-------APGK-----RRCNCRNEVYHKQI 183
           D+   L  +      G  + +   KNV          APG      R C    +V   Q 
Sbjct: 119 DLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ- 177

Query: 184 GPGMFQ------------QMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDG 231
             G FQ            ++    C +C+     ++   + V I  G+  G  +    +G
Sbjct: 178 --GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEG 235

Query: 232 EPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDE 285
           EP + G P GDL   I       F+R+G +L  T  ++ VQA +G    +  LD+
Sbjct: 236 EPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDD 290

Length = 373

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score =  145 bits (367), Expect = 1e-40
 Identities = 89/297 (29%), Positives = 133/297 (44%), Gaps = 46/297 (15%)

Query: 23  AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
               YY+ L V + AS ++IK+AYRKL+ KYHPD N+    A +++ E+  AYE LSD +
Sbjct: 2   NNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQ 60

Query: 83  TRNIYDTYGEEGLKQHAAGGGRG-------GGMGVNIQDIFSSFFGGGPMEEDEKIV-KG 134
            R  YD YG  G      GG  G       GG G   +DIFSSFFGGG    +     +G
Sbjct: 61  KRAAYDQYGAAGANGGFGGGAGGFGGFDGSGGFG-GFEDIFSSFFGGGGARRNPNAPRQG 119

Query: 135 DDVIVELDATLEDLYMGGSLKVWREKNVIKPA-------PGKRRCNCRNEVYHKQIGPGM 187
           DD+   ++   E+   G   +V   +             PG     C      K  G G+
Sbjct: 120 DDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTC-----GKCHGSGV 174

Query: 188 FQ---------QMTEQVCDQC----QNVKY----------EREGYFVTVDIEKGMQDGQE 224
                         +  CD C    + +K           E++ + V+V I  G++ GQ+
Sbjct: 175 ITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQ 234

Query: 225 VVFYEDGEPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTI 280
           +     GE   +G P GDL    R  P  +F R+G+ ++ T+ ++ VQA +G    +
Sbjct: 235 IRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEV 291

Length = 380

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score =  139 bits (353), Expect = 1e-38
 Identities = 100/313 (31%), Positives = 145/313 (46%), Gaps = 51/313 (16%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           + YYE+L + + AS E IK+AYRKLA+KYHPDKN+   +A ++F EI+ AY VLSD+E R
Sbjct: 5   RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKR 63

Query: 85  NIYDTYGEEGL-KQHAA----GGGRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIV 139
             YD +G  G+  Q++A     G   GG G    DIF  FFGGG         +G D+  
Sbjct: 64  AQYDRFGHAGIDNQYSAEDIFRGADFGGFG----DIFEMFFGGGGRRGRMGPRRGSDLRY 119

Query: 140 ELDATLEDLYMG--GSLKVWREKNV-------IKPAPGKRRC-NC--RNEVYHKQIGPGM 187
           +L  TLE+   G    + V R +          KP    +RC  C    +V   +  P  
Sbjct: 120 DLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLG 179

Query: 188 FQQMTEQVCDQCQ-----------------NVKYEREGYFVTVDIEKGMQDGQEVVFYED 230
            Q +T   C  C                   V+  R+   +TV++  G   G  +    +
Sbjct: 180 -QFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRK---ITVNVPAGADSGLRLKLSGE 235

Query: 231 GEPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVD 289
           GE    G P GDL   +    HD F R G+++ + + ++  QA +G +  +  L      
Sbjct: 236 GEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTL------ 289

Query: 290 ISTKVSMNMCFGT 302
              KV MN+  GT
Sbjct: 290 -YGKVKMNIPPGT 301

Length = 377

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score =  138 bits (348), Expect = 6e-38
 Identities = 105/331 (31%), Positives = 152/331 (45%), Gaps = 48/331 (14%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           + YYEVL V R A  ++IK+AYRKLA KYHPD ++  E A ++F EI+ AY VLSD E R
Sbjct: 5   RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSE-EEGAEEKFKEISEAYAVLSDDEKR 63

Query: 85  NIYDTYGEEGLKQHAAG------------GGRGGGMGVNIQDIFSSFFGGGPMEEDEKIV 132
             YD +G  G+   +               G G G+G NI D+F   FGGG     +   
Sbjct: 64  QRYDQFGHAGMDGFSQEDIFNNINFEDIFQGFGFGIG-NIFDMFG--FGGGSRHGPQ--- 117

Query: 133 KGDDVIVELDATLEDLYMGGS--LKVWREK-------NVIKPAPGKRRC-NCRNEVYHKQ 182
           +G D+  E++ TLE+   G    +KV   K       +  +P    + C  C      KQ
Sbjct: 118 RGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQ 177

Query: 183 IGPGMFQQM---------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVF 227
           +   +  QM                E+ C  C      RE   ++V I  G++ G  +  
Sbjct: 178 VRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRV 237

Query: 228 YEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEH 286
             +GE     GEPGDL   I+  PH  FRREG NL+    ++ VQA +G    +  +D  
Sbjct: 238 SGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDG- 296

Query: 287 LVDISTKVSMNMCFGTSFAMTKKRIEVLKFS 317
              +  K+      GT+F +    +  L++S
Sbjct: 297 --PVELKIPAGTQSGTTFRLKGHGMPSLRWS 325

Length = 378

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score =  136 bits (344), Expect = 4e-37
 Identities = 104/314 (33%), Positives = 144/314 (45%), Gaps = 55/314 (17%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           + YYEVL V R A  ++IK+AYRKLALKYHPDKN  N+EA + F E+N AYEVLS+ + R
Sbjct: 3   RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKR 62

Query: 85  NIYDTYGEEGLKQHAAGGGRG--GGMGVNIQDIFSSF---------FGGGPMEEDEKI-- 131
             YD +G  G+   AA GG    GG G +  DIFS+F          GGG     E +  
Sbjct: 63  RRYDQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFG 122

Query: 132 -----------VKGDDVIVELDATLEDLYMG--GSLKVWREK-----NVIKPAPGKRR-- 171
                      + G D+ + L  TLE++  G   +LK+ ++      N      G     
Sbjct: 123 GGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETC 182

Query: 172 --CNCRNEVYHKQIGPGMFQQMTE-QVCDQC----QNVKYER------EGY-----FVTV 213
             C+   EV  +Q    MF Q      C  C    + VK +R      EG       V V
Sbjct: 183 PTCHGSGEV--RQASKTMFGQFVNITACPTCGGEGRVVK-DRCPACYGEGIKQGEVTVKV 239

Query: 214 DIEKGMQDGQEVVFYEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQA 272
            +  G+QDG  +     G      G PGDL   I   PH+ F R G+++   + V+    
Sbjct: 240 TVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDL 299

Query: 273 LVGFEKTIEHLDEH 286
           ++G +  +  LD  
Sbjct: 300 VLGTKVEVPTLDGA 313

Length = 397

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score =  135 bits (343), Expect = 4e-37
 Identities = 101/308 (32%), Positives = 141/308 (45%), Gaps = 70/308 (22%)

Query: 27  YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQ--GNEEANKRFAEINNAYEVLSDSETR 84
           YYE+L V R A  +++KRAYR+LA KYHPD N+  G E+   RF EIN AYEVLSD ETR
Sbjct: 5   YYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAED---RFKEINRAYEVLSDPETR 61

Query: 85  NIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGG--------------GPMEEDEK 130
             YD +GE G+   AAG    G MG    DIF +FF G              GP      
Sbjct: 62  ARYDQFGEAGVSG-AAGFPDMGDMG-GFADIFETFFSGFGGAGGQGGRRRRRGP------ 113

Query: 131 IVKGDDVIVELDATLEDLYMGGSLKVWREKNV---------------IKPAPGKRRC-NC 174
             +GDD+  +L     +   GG      EK +                KP  G   C  C
Sbjct: 114 -QRGDDLRYDLKLDFREAIFGG------EKEIRIPHLETCETCRGSGAKPGTGPTTCSTC 166

Query: 175 --RNEVYHKQIGP-GMFQQMTE--------QV----CDQC--QNVKYEREGYFVTVDIEK 217
               +V      P G F Q++E        QV    CD C  Q VK   +   + ++I  
Sbjct: 167 GGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKK--LKINIPA 224

Query: 218 GMQDGQEVVFYEDGEPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGF 276
           G+  G  +    +G+  + G P GDL   +       FRR+G N+ + + ++ +QA++G 
Sbjct: 225 GVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGD 284

Query: 277 EKTIEHLD 284
              ++ +D
Sbjct: 285 TLEVDTVD 292

Length = 374

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score =  133 bits (337), Expect = 2e-36
 Identities = 93/296 (31%), Positives = 143/296 (48%), Gaps = 48/296 (16%)

Query: 23  AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDS 81
             K YYE+L V R A+ E+IKRAY++L  ++HPD++  N +EA ++F EI  AYEVLSD 
Sbjct: 2   EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP 61

Query: 82  ETRNIYDTYGEEGLKQHAAGGGRGGGMGVNI---------QDIFSSFFGGGPMEEDEKIV 132
           + R +YD +G  G +        GGG   +I         +DIF  FFG    +E+++  
Sbjct: 62  QKRAMYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREY 121

Query: 133 --KGDDVIVELDATLEDLYMGGSLKVWREKNVIKP-------APGKRRCNC--------- 174
             +G+D+  E++ TL DL  G  + V  ++    P        PG     C         
Sbjct: 122 ARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRI 181

Query: 175 RNEVYHKQIGPGMFQQMTEQVCDQC-------QNVKYE-------REGYFVTVDIEKGMQ 220
           R E   ++   G+F  ++E+ C++C           +E       R     TV I  G++
Sbjct: 182 REE---RRSFFGVF--VSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVE 236

Query: 221 DGQEVVFYEDGEPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVG 275
           DG  +     G     G P GDL   +R  P  RF+R G++L   VT+  +QA++G
Sbjct: 237 DGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILG 292

Length = 369

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score =  133 bits (335), Expect = 4e-36
 Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 29/286 (10%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           + YYE+L + +GAS ++IK+AYRK+A+KYHPDKN+GN+EA   F E   AYEVL D   R
Sbjct: 3   RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKR 62

Query: 85  NIYDTYGEEGLKQHAAGGGRGGGMG------VNIQDIFSSFFGGGP-MEEDEKIVKGDDV 137
             YD +G    +      G  GG         +  DIF SFF G    +++ K  KG D+
Sbjct: 63  AQYDRFGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDL 122

Query: 138 IVELDATLEDLYMGGSLKVWREKNVI-KPAPGKRR--------CNCRNEVYHKQIGPGMF 188
             +++ +LED Y+G    +   +N++ +   GK+         CN  N       G G F
Sbjct: 123 TYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFF 182

Query: 189 QQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKID 236
           +  T               C  C+     ++   + + I  G+ D Q++     G    D
Sbjct: 183 RVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPD 242

Query: 237 G-EPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIE 281
             + GDL  +I   PH  F+R G +L+ T+ ++  QA +G E  I+
Sbjct: 243 NQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQ 288

Length = 365

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score =  133 bits (336), Expect = 4e-36
 Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 53/308 (17%)

Query: 23  AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
             + YYEVL V + A+ ++IK+AYRK A++YHPDKN G++EA ++F E   AY+VLSD +
Sbjct: 3   EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPD 62

Query: 83  TRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSF----------------FGGGPME 126
            R+ YD +G  G+   AAGGG   G G++++DIFS F                FGGG   
Sbjct: 63  KRSRYDQFGHAGVG-GAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGG--G 119

Query: 127 EDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVI---------KPAPGKRRCN-CRN 176
             +++ +G D+ V++   L+++  G   K   +K V          +   G   C  C+ 
Sbjct: 120 SQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKG 179

Query: 177 E---VYHKQIGPGMFQQMTEQVCDQC----------------QNVKYEREGYFVTVDIEK 217
                  +    G  Q  T+  C  C                + + Y  E   +TV I  
Sbjct: 180 SGSVTRVQNTILGTMQ--TQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEE--VITVKIPA 235

Query: 218 GMQDGQEVVFYEDGE-PKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGF 276
           G+ +G ++     G   K  G  GDL   I   PH    R+ N+L   + +++  A +G 
Sbjct: 236 GVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGG 295

Query: 277 EKTIEHLD 284
              +  +D
Sbjct: 296 AVEVPTID 303

Length = 386

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score =  130 bits (328), Expect = 7e-35
 Identities = 95/306 (31%), Positives = 131/306 (42%), Gaps = 55/306 (17%)

Query: 27  YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
           YY +L V + AS E+IK+AYRKLA+KYHPDKN G+ EA KRF E++ AYEVLSD++ R  
Sbjct: 3   YYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRES 62

Query: 87  YDTYGEEGLKQHAAGGGRGGGMGVNIQD------------------IFSSFFGG-----G 123
           YD YG++G    A G G G GMG N++D                   F   FGG     G
Sbjct: 63  YDRYGKDGPFAGAGGFG-GAGMG-NMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFG 120

Query: 124 PMEEDEKIVKGDDVIVELDATLEDLYMG--GSLKVWREKNVIKPAPGKR----------- 170
                    +G    V +  + E+   G    L V   K+      G             
Sbjct: 121 MRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSC-DACSGSGANSSQGIKVCD 179

Query: 171 RCNCRNEVYHKQIGPGMFQ------------QMTEQVCDQCQNVKYEREGYFVTVDIEKG 218
           RC    +V   +   G F             ++    C  C+     ++   V V I  G
Sbjct: 180 RCKGSGQVVQSR---GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAG 236

Query: 219 MQDGQEVVFYEDGEPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFE 277
           +  G  +     G+   +G P GDL   I   PH  F R G++L   + +  V A +G +
Sbjct: 237 VDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMK 296

Query: 278 KTIEHL 283
           K I  L
Sbjct: 297 KEIPTL 302

Length = 391

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score =  127 bits (321), Expect = 4e-34
 Identities = 90/298 (30%), Positives = 138/298 (46%), Gaps = 38/298 (12%)

Query: 22  IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDS 81
           ++ +SYY++L V + A+DE+IK AYRKLA+KYHPDKN+GN+E+ ++F E   AYE+L D 
Sbjct: 1   MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60

Query: 82  ETRNIYDTYGEEGLKQHAAGGGRGGGMGV-----NIQDIFSSFFGGGPME-----EDEKI 131
           + R  YD +G+ G+   A G G+G          +  DIF  FFGGG             
Sbjct: 61  KKRQAYDQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGP 120

Query: 132 VKGDDVIVELDATLEDLYMGGSLKV---WREKNVIKPAPGKRR---------CNCRNEVY 179
            +G D+   L+ +LED  +G   K+     E  V     G  +         C    ++ 
Sbjct: 121 QRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIR 180

Query: 180 HKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVF 227
             Q   G F   T               C  C     + +   + + I  G++ G  +  
Sbjct: 181 RTQ---GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKV 237

Query: 228 YEDGEPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLD 284
             +GE   +G P GDL        H+ F R+GN+L     ++L QA++G E  +  +D
Sbjct: 238 SGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTID 295

Length = 372

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score =  124 bits (313), Expect = 6e-33
 Identities = 92/287 (32%), Positives = 127/287 (44%), Gaps = 32/287 (11%)

Query: 27  YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
           YYE+L V R AS ++IK AYRKLALKYHPD+N+  + A ++FA+IN AY VLSD+E R  
Sbjct: 4   YYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAH 62

Query: 87  YDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEED---EKIVKGDDVIVELDA 143
           YD +G         GG   GGMG +  DIF   FGG             +GDD+  E   
Sbjct: 63  YDRFG-TAPGAGMPGGDPFGGMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARI 121

Query: 144 TLEDLYMGGSLKVWREKNVI-------KPAPG---KRRC-NCRNE-------------VY 179
           TLE    G  ++V  ++          +  PG    + C  CR               V 
Sbjct: 122 TLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVE 181

Query: 180 HKQIGPGM--FQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDG 237
            +Q  P      Q+    C  C+      +   V V + +G+ +G  +     G     G
Sbjct: 182 TQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGG 241

Query: 238 EPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLD 284
             GDL   I   PH   RRE  +L     +   +A +G + T+  LD
Sbjct: 242 N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLD 287

Length = 371

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score =  115 bits (290), Expect = 1e-32
 Identities = 45/62 (72%), Positives = 51/62 (82%)

Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
          YYE+L VPR ASDE+IK+AYRKLALKYHPDKN G+  A ++F EIN AYEVLSD E R I
Sbjct: 2  YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRAI 61

Query: 87 YD 88
          YD
Sbjct: 62 YD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score =  123 bits (311), Expect = 2e-32
 Identities = 89/305 (29%), Positives = 127/305 (41%), Gaps = 47/305 (15%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           K YY+VL VP+ A++ +IK+AYRKLA +YHPD N+G+ +A +RF EI+ AY+VLSD + R
Sbjct: 9   KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKR 68

Query: 85  NIYDT----YGEEG-------------------LKQHAAGGGRGGGMGVNIQDIFSSFFG 121
             YD     +G  G                   L    A GG G G G  + D+F   F 
Sbjct: 69  KEYDEARSLFGNGGFRPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFN 128

Query: 122 GGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNV---------IKPAPGKRRC 172
            G      +  +G DV  E+  +  +   G ++ +                K     R C
Sbjct: 129 RGGRRTQPR--RGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVC 186

Query: 173 NCRNEVYHKQIGPGMFQ------------QMTEQVCDQCQNVKYEREGYFVTVDIEKGMQ 220
              +         G F              + +  C  C+     +    + V I  G+ 
Sbjct: 187 PTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVS 246

Query: 221 DGQEVVFYEDGEPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKT 279
           DGQ +     G P   G P GDL   +   PH  F R G+NL  TV VT  +A +G E  
Sbjct: 247 DGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVR 306

Query: 280 IEHLD 284
           +  L 
Sbjct: 307 VPTLG 311

Length = 389

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score =  120 bits (303), Expect = 4e-32
 Identities = 93/281 (33%), Positives = 123/281 (43%), Gaps = 73/281 (25%)

Query: 22  IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDS 81
           +A K YY +L VP+ AS ++IK+A++KLA KYHPD N+ +  A ++F EIN AY VLSD 
Sbjct: 1   MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDP 59

Query: 82  ETRNIYDTYGEEGLKQHAAG-----GGRGGGMGVNIQDIFSSFFG---GGP--------- 124
           E R IYDTYG         G      G G   G N+ D FS FF    GG          
Sbjct: 60  EKRRIYDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGD-FSDFFQQLFGGRGGFGGFGDL 118

Query: 125 -MEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQI 183
                 +  KG D+  EL  TLE+ Y GG      EK V                     
Sbjct: 119 FGSVGRRARKGRDLEAELPLTLEEAYRGG------EKVV--------------------- 151

Query: 184 GPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLK 243
                             V  ER    ++V I  G+++GQ +            + GDL 
Sbjct: 152 -----------------EVAGER----LSVRIPPGVREGQVIRL-----AGKGRQGGDLY 185

Query: 244 FRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLD 284
             +R  PH  FR EG++L+ TV V    A+VG +  +  LD
Sbjct: 186 LVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLD 226

Length = 291

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score =  120 bits (303), Expect = 1e-31
 Identities = 88/291 (30%), Positives = 133/291 (45%), Gaps = 48/291 (16%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           + YY++L V + AS   +K+AY KLA +YHPD     ++A K+F EIN AY+VL D + R
Sbjct: 3   QDYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKR 61

Query: 85  NIYDTYGEEGL--KQHAAGGGRGGGMGVNIQDIFSSFF-----GGGPMEEDEKIVKGDDV 137
             YD +G +    +Q   GGG  GG   +I DIF  FF     G          V+G D+
Sbjct: 62  AAYDRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDL 121

Query: 138 IVELDATLEDLYMGGSLKVWREKNVIKPAPGK---------------RRCNCRNEVYHKQ 182
              L   LE+ + G       EKN+   +  K                 C+  + V   +
Sbjct: 122 KYNLTINLEEAFHG------IEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATR 175

Query: 183 IGPGMFQQMTEQVCDQCQNV---------------KYEREGYFVTVDIEKGMQDGQEVVF 227
           +  G F    EQ C +CQ                 +Y ++   ++V+I  G+++G  +  
Sbjct: 176 MQQGFF--TIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRN-LSVNIPAGVENGTRIRH 232

Query: 228 YEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFE 277
             +GE  I  G  GDL   I   PHD ++ +G NLH  + ++ V A +G E
Sbjct: 233 TGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGE 283

Length = 372

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score =  114 bits (287), Expect = 3e-29
 Identities = 93/320 (29%), Positives = 143/320 (44%), Gaps = 43/320 (13%)

Query: 22  IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDS 81
           ++ + YYEVL V R AS +++K+AYRKLA KYHPD N+   +A  +F E+  AY+ LSD 
Sbjct: 1   MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDP 59

Query: 82  ETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEKIVK-GDDVIVE 140
           + +  YD +G     Q   GGG G   G +  DIF  FFGGG    +    + G D+   
Sbjct: 60  QKKAHYDQFGHTDPNQGFGGGGAGDFGGFS--DIFDMFFGGGGGRRNPNAPRQGADLQYT 117

Query: 141 LDATLEDLYMGG--SLKVWREK----------------------------NVIKPAPGKR 170
           +    ++   G    +++ RE+                            NV +  P  R
Sbjct: 118 MTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGR 177

Query: 171 RCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYED 230
             N R  V H   G G      +Q C  C      R+   + V +  G+  GQ++     
Sbjct: 178 VVNRR--VCHHCEGTGKI---IKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQ 232

Query: 231 GEPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVD 289
           GE  ++G P GDL       PH+ F R+G++++  + +T  Q  +G E  +  L+     
Sbjct: 233 GEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNG---K 289

Query: 290 ISTKVSMNMCFGTSFAMTKK 309
           +  K+      GTSF +  K
Sbjct: 290 VKLKIPAGTQTGTSFRLRGK 309

Length = 371

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score =  114 bits (286), Expect = 7e-29
 Identities = 89/319 (27%), Positives = 132/319 (41%), Gaps = 64/319 (20%)

Query: 23  AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
             K +Y+ L V   AS E+IK+AYRKLA + HPD N G+  A +RF  ++ A++VLSD  
Sbjct: 7   VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPA 66

Query: 83  TRNIYDTY------GEEGLKQHAAGGGRGG---------------------GMGVNIQDI 115
            R  YD        G  G ++   GGG GG                     G G  I D+
Sbjct: 67  KRKEYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDL 126

Query: 116 FSSFFG-GGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAP------- 167
           F   F  GG      +  +G+D  +E + TL+  ++  +  V     +  PAP       
Sbjct: 127 FGGLFNRGGGSARPSRPRRGND--LETETTLD--FVEAAKGVTMPLRLTSPAPCTTCHGS 182

Query: 168 GKR---------RCNCRNEVYHKQIGPGMFQ------------QMTEQVCDQCQNVKYER 206
           G R          CN    +   Q   G F              + E  C++C+      
Sbjct: 183 GARPGTSPKVCPTCNGSGVISRNQ---GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTT 239

Query: 207 EGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEP-GDLKFRIRTAPHDRFRREGNNLHTTV 265
               + V I  G++DGQ +     GE  + G P GDL   +   P   F R+G++L  TV
Sbjct: 240 RTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTV 299

Query: 266 TVTLVQALVGFEKTIEHLD 284
            V+  +  +G   ++  LD
Sbjct: 300 PVSFTELALGSTLSVPTLD 318

Length = 392

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score =  104 bits (262), Expect = 1e-28
 Identities = 38/54 (70%), Positives = 45/54 (83%)

Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80
          YY++L VP  ASDE+IK+AYRKLALKYHPDKN  + EA ++F EIN AYEVLSD
Sbjct: 2  YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score =  111 bits (279), Expect = 4e-28
 Identities = 86/307 (28%), Positives = 127/307 (41%), Gaps = 59/307 (19%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE-EANKRFAEINNAYEVLSDSET 83
           K YY++L V R AS E IK+A+R+LA K+HPD + GN+ EA ++F EI+ AYEVLSD + 
Sbjct: 3   KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQK 62

Query: 84  RNIYDTYGEEGLKQHAAGGGRGGGMGVN---------IQDIFSSFFGG------------ 122
           R  YD  G              GG   N         I DIF+  FGG            
Sbjct: 63  RRQYDQTGTVDFG--------AGGSNFNWDNFTHFSDINDIFNQIFGGNFGSDFFSGFGN 114

Query: 123 GPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKP------APGKRRCNCR- 175
                +  +    D+   LD +LED Y G   ++   +N + P      A   +   C  
Sbjct: 115 QQSTRNIDL----DIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPT 170

Query: 176 -NEVYHKQI--GPGMFQQMT--------------EQVCDQCQNVKYEREGYFVTVDIEKG 218
            +    ++I  G G F+ +T              E+ C +C           ++V I KG
Sbjct: 171 CHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKG 230

Query: 219 MQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEK 278
             D   +     G+    G  GDL   +R       +R  ++L+    +   QA +G E 
Sbjct: 231 ATDNLRLRVKGKGQ-SYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEI 289

Query: 279 TIEHLDE 285
            I+   E
Sbjct: 290 EIKLFRE 296

Length = 365

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score =  110 bits (276), Expect = 1e-27
 Identities = 82/303 (27%), Positives = 135/303 (44%), Gaps = 44/303 (14%)

Query: 22  IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDS 81
           +  K YYEVL V + AS+++I++AYRKLA +YHPD N+ + +A+ +  EIN A +VL D 
Sbjct: 1   MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDK 59

Query: 82  ETRNIYDTYGEEGLKQHAAGGGRGGGM-----------GVNIQDIFSSFFGGGPMEEDEK 130
           + R  YD +G       +      G               +  +IFS FFG     + ++
Sbjct: 60  DKRKQYDQFGHAAFDGSSGFSSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSN-KSDYQR 118

Query: 131 IVKGDDVIVELDATLEDLYMGGSLKVWREKNVIK----------PAPGK----RRCNCRN 176
             KG  V +++  T ++L  G    +  E +++            +         C+   
Sbjct: 119 STKGQSVSLDIYLTFKELLFGVDKII--ELDLLTNCSKCFGSGAESNSDIHICNNCHGTG 176

Query: 177 EVY-HKQIGPGMFQQ-MTEQVCD--------QCQNVK---YEREGYFVTVDIEKGMQDGQ 223
           EV   K +G   FQQ     VC+        +C+N K      E   + V+I KG++  Q
Sbjct: 177 EVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQ 236

Query: 224 EVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNN-LHTTVTVTLVQALVGFEKTIE 281
           ++   + G   ++ G  GDL   I       F    NN +  T  ++ + A++G E  I+
Sbjct: 237 QIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIK 296

Query: 282 HLD 284
            LD
Sbjct: 297 TLD 299

Length = 372

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score =  108 bits (271), Expect = 5e-27
 Identities = 80/273 (29%), Positives = 131/273 (47%), Gaps = 25/273 (9%)

Query: 26  SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRN 85
           SYYE+L+V + ++ E IK++YRKLALKYHPD+N G++EA ++F  IN AY VLSD + R 
Sbjct: 4   SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63

Query: 86  IYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFG-GGPMEEDEKIVKGDDVIVELDAT 144
           +YD YG++GL Q  A          ++   F   FG G    + +K     D +  ++ +
Sbjct: 64  LYDRYGKKGLNQAGASQSDFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELS 123

Query: 145 LEDLYMG--GSLKVWREKNVIKPAPGK----------RRCNCRNEVYHKQIGPGMFQQ-- 190
            ++   G   ++KV + ++V +   G           ++CN + +V+ +Q G   F Q  
Sbjct: 124 FKEAVFGCKKTIKV-QYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ-GFMSFAQTC 181

Query: 191 --------MTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDL 242
                   + +  C  C+   Y  +   +   I +G+ D   +V    G     G+ GDL
Sbjct: 182 GACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDL 241

Query: 243 KFRIRTAPHDRFRREGNNLHTTVTVTLVQALVG 275
               R    + F+REG +L     V      +G
Sbjct: 242 YLEARVKEDEHFKREGCDLFIEAPVFFTTIALG 274

Length = 369

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 99.6 bits (249), Expect = 1e-26
 Identities = 41/59 (69%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSE 82
            YYE+L VPR AS ++IK+AYRKLALKYHPDKN G+ EEA ++F EIN AYEVLSD E
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59

Length = 60

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score =  102 bits (257), Expect = 1e-26
 Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 41/154 (26%)

Query: 135 DDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQ 194
            D+  +L+ TLE+ Y G   ++   + V                                
Sbjct: 1   ADLRYDLELTLEEAYFGKEKEIKIPRKVT------------------------------- 29

Query: 195 VCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEP-KIDGEPGDLKFRIRTAPHDR 253
                      RE   +TV I  G+ DGQ +    +G+     G PGDL   IR  PH  
Sbjct: 30  ---------RVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPV 80

Query: 254 FRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHL 287
           FRR+GN+L+  V ++L +AL+G E  +  L   +
Sbjct: 81  FRRDGNDLYCEVPISLTEALLGGEIEVPTLGGKV 114

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 96.0 bits (238), Expect = 2e-23
 Identities = 60/242 (24%), Positives = 95/242 (39%), Gaps = 25/242 (10%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG-NEEANKRFAEINNAYEVLSDSET 83
             YYE+L VP  AS E+IK+AYRKLALKYHPD+N G  + A ++F EIN AYE+LSD E 
Sbjct: 6   LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPER 65

Query: 84  RNIYDTYGEEG---LKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVE 140
           R  YD  G +     K +           + +  ++  + G     E +           
Sbjct: 66  RAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRGKRNKTERK----------- 114

Query: 141 LDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQ 200
             A+L DL   G   +    ++            R+    ++           +      
Sbjct: 115 --ASLADLLSRGLSGLAAALSLFADEAAL-----RSGSL-RRRDLAANLADNFEEALAGV 166

Query: 201 NVKYEREGY-FVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGN 259
                R     +   I+ G  +G+ +      +    G  G  + +  +  H  F  EG+
Sbjct: 167 KKAVARLLGKALKSTIKAGALEGKALRLKGLLKSA-RGALGKARLKELSKRHPPFALEGD 225

Query: 260 NL 261
           + 
Sbjct: 226 DK 227

Length = 237

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 93.0 bits (230), Expect = 7e-21
 Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 11/97 (11%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           + YYEVL + R A +++IK+A+RKLA KYHPD+N+   +A   FAEIN A +VLS+ + R
Sbjct: 2   RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK-APDAASIFAEINEANDVLSNPKKR 60

Query: 85  NIYDTYGEEGLKQHAAGGGRGGGMGVNIQ-DIFSSFF 120
             YD YG +G+ +             + Q D+F+SFF
Sbjct: 61  ANYDKYGHDGVDRED---------DFDFQADVFNSFF 88

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 90.3 bits (224), Expect = 8e-21
 Identities = 81/273 (29%), Positives = 111/273 (40%), Gaps = 53/273 (19%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           K YY ++ V      + IK AYR+LA KYHPD ++   +A  RF E+  A+EVLSD + R
Sbjct: 4   KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDEQRR 62

Query: 85  NIYDTYGEEGLKQH----------AAGGGRGGGMGVNIQDIFSSFFGG-GPMEEDEKIVK 133
             YD      L QH            G G+      +  DIFSS FG            +
Sbjct: 63  AEYDQ-----LWQHRNDPQFNRQFQHGDGQSFNAE-DFDDIFSSIFGQHARQSRQRPAAR 116

Query: 134 GDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTE 193
           G D+ +E+   LE+                     KR  +    VY+   G      M E
Sbjct: 117 GHDIEIEVAVFLEETL----------------TEHKRTISYNLPVYN-AFG------MIE 153

Query: 194 QVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEP-GDLKFRIRTAPHD 252
           Q   +  NVK           I  G+ +GQ +     G P  +G P GDL   I  APH 
Sbjct: 154 QEIPKTLNVK-----------IPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHP 202

Query: 253 RFRREGNNLHTTVTVTLVQALVGFEKTIEHLDE 285
            F   G +L   V +   +A +G + T+  L E
Sbjct: 203 LFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKE 235

Length = 306

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 72.7 bits (178), Expect = 3e-14
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 5/80 (6%)

Query: 28  YEVLQVPRGASDEQIKRAYRKLALKYHPDK-----NQGNEEANKRFAEINNAYEVLSDSE 82
           YE+L + +  S+  IK+ YR L++K+HPDK     N+   E  +++  I  AY +L+D +
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 83  TRNIYDTYGEEGLKQHAAGG 102
            R  Y  YG     QH + G
Sbjct: 161 RRENYLNYGTPDSPQHTSEG 180

Length = 610

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 53.3 bits (127), Expect = 9e-08
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 27  YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
           +Y++L V   A  ++I   Y KLA  Y+P K  GNE  +K F +IN AY++L D + + +
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHK-FKKINEAYQILGDIDKKKM 633

Query: 87  YDTYGEEGLKQ 97
           Y+ +G +G+K 
Sbjct: 634 YNKFGYDGIKG 644

Length = 1136

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 28  YEVLQVPRGASDEQIKRAYRKLALKYHPDK--NQG-----NEEANKRFAEINNAYEVL 78
           Y+VL V     D++IKRAYRKL  ++HPDK   +G      E A ++  EI  AYE++
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELI 260

Length = 267

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (110), Expect = 9e-06
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 37  ASDEQIKRAYRKLALKYHPDKNQGNEEANKR--FAEINNAYEVLSDSETRNIYDT 89
           A   QI +A++K   KYHPDK            F  I  A EVL D + R  YD+
Sbjct: 58  AIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112

Length = 379

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 260 NLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           +L+ T+ ++L +AL+G    +  LD   V I   
Sbjct: 1   DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIP 34

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 28  YEVLQVPRGASDEQIKRAYRKLALKYHPDK--NQGN-----EEANKRFAEINNAYE 76
            +VL V   A  + IK+AYRKL  + HPDK   +G      E+  ++  EI  AYE
Sbjct: 116 LKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171

Length = 174

>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 26 SYYEVLQVPRGASD--EQIKRAYRKLALKYHPDKNQGNEEANKRF---AEINNAYEVLSD 80
          +Y+++L +P+  +   + +++ Y  + +KYHPDK +  +E  +     +E+NNAY  L D
Sbjct: 3  NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKD 62

Query: 81 SETRNIY 87
          +  R  Y
Sbjct: 63 ALKRAEY 69

Length = 166

>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 6/56 (10%)

Query: 29 EVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
          ++L +PR A  +   +++AY +  L++HPDK  G+EE  K   E+N  Y+   +S 
Sbjct: 9  DLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG-GDEEKMK---ELNTLYKKFRESV 60

Length = 153

>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 6/55 (10%)

Query: 29 EVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDS 81
          ++L +P  A  +   +++AY +   +YHPDK  G+EE  KR   +N+ Y+ L + 
Sbjct: 15 DLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKR---LNSLYKKLQEG 65

Length = 647

>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 28  YEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVL 78
           Y++L +   AS E+I+ A+++L L+ HPD       A+K    +N A ++L
Sbjct: 68  YKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASK----VNEAKDLL 114

Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14286	372	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14285	365	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	100.0
PRK14278	378	chaperone protein DnaJ; Provisional	100.0
PRK14280	376	chaperone protein DnaJ; Provisional	100.0
PRK14276	380	chaperone protein DnaJ; Provisional	100.0
PRK14277	386	chaperone protein DnaJ; Provisional	100.0
PRK14297	380	chaperone protein DnaJ; Provisional	100.0
PRK14279	392	chaperone protein DnaJ; Provisional	100.0
PRK14284	391	chaperone protein DnaJ; Provisional	100.0
PRK14301	373	chaperone protein DnaJ; Provisional	100.0
PRK14294	366	chaperone protein DnaJ; Provisional	100.0
PRK14295	389	chaperone protein DnaJ; Provisional	100.0
PRK10767	371	chaperone protein DnaJ; Provisional	100.0
PRK14281	397	chaperone protein DnaJ; Provisional	100.0
PRK14291	382	chaperone protein DnaJ; Provisional	100.0
PRK14290	365	chaperone protein DnaJ; Provisional	100.0
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	100.0
PRK14300	372	chaperone protein DnaJ; Provisional	100.0
PRK14283	378	chaperone protein DnaJ; Provisional	100.0
PRK14292	371	chaperone protein DnaJ; Provisional	100.0
PRK14289	386	chaperone protein DnaJ; Provisional	100.0
PRK14293	374	chaperone protein DnaJ; Provisional	100.0
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	100.0
PRK14299	291	chaperone protein DnaJ; Provisional	100.0
PRK10266	306	curved DNA-binding protein CbpA; Provisional	100.0
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	100.0
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	100.0
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	100.0
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.94
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.84
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.83
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.81
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.8
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.78
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.76
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.75
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.74
PHA03102	153	Small T antigen; Reviewed	99.73
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.72
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.71
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.68
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.65
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.6
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.58
PRK05014	171	hscB co-chaperone HscB; Provisional	99.49
PRK01356	166	hscB co-chaperone HscB; Provisional	99.48
PRK00294	173	hscB co-chaperone HscB; Provisional	99.44
PRK03578	176	hscB co-chaperone HscB; Provisional	99.44
PTZ00100	116	DnaJ chaperone protein; Provisional	99.4
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.35
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.31
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.29
PHA02624	647	large T antigen; Provisional	99.29
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	99.23
PRK14282	369	chaperone protein DnaJ; Provisional	99.01
PRK01773	173	hscB co-chaperone HscB; Provisional	98.98
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.95
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	98.89
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.88
PRK14290	365	chaperone protein DnaJ; Provisional	98.88
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.85
PRK14285	365	chaperone protein DnaJ; Provisional	98.84
PRK14294	366	chaperone protein DnaJ; Provisional	98.81
PRK14299	291	chaperone protein DnaJ; Provisional	98.74
PRK14284	391	chaperone protein DnaJ; Provisional	98.74
PRK10767	371	chaperone protein DnaJ; Provisional	98.72
PRK14300	372	chaperone protein DnaJ; Provisional	98.71
PRK14298	377	chaperone protein DnaJ; Provisional	98.7
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	98.66
PRK14279	392	chaperone protein DnaJ; Provisional	98.66
PRK14295	389	chaperone protein DnaJ; Provisional	98.64
PRK14301	373	chaperone protein DnaJ; Provisional	98.64
PRK14287	371	chaperone protein DnaJ; Provisional	98.63
PRK14288	369	chaperone protein DnaJ; Provisional	98.61
PRK14291	382	chaperone protein DnaJ; Provisional	98.61
PRK10266	306	curved DNA-binding protein CbpA; Provisional	98.57
PRK14293	374	chaperone protein DnaJ; Provisional	98.56
PRK14276	380	chaperone protein DnaJ; Provisional	98.51
PRK14286	372	chaperone protein DnaJ; Provisional	98.49
PRK14292	371	chaperone protein DnaJ; Provisional	98.46
PRK14278	378	chaperone protein DnaJ; Provisional	98.45
PRK14281	397	chaperone protein DnaJ; Provisional	98.45
PRK14280	376	chaperone protein DnaJ; Provisional	98.44
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.43
PRK14297	380	chaperone protein DnaJ; Provisional	98.41
PRK14289	386	chaperone protein DnaJ; Provisional	98.35
PRK14283	378	chaperone protein DnaJ; Provisional	98.34
PRK14277	386	chaperone protein DnaJ; Provisional	98.32
PTZ00037	421	DnaJ_C chaperone protein; Provisional	98.3
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	98.3
PRK14296	372	chaperone protein DnaJ; Provisional	98.28
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.27
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.23
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	98.21
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	97.17
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.08
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.62
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	96.1
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.43
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	95.43
KOG0431	453	consensus Auxilin-like protein and related protein	94.27
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	93.43
PLN03165	111	chaperone protein dnaJ-related; Provisional	91.62
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	87.89
PF13446	62	RPT: A repeated domain in UCH-protein	84.34
KOG0724	335	consensus Zuotin and related molecular chaperones	83.7

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-79  Score=567.24  Aligned_cols=289  Identities=35%  Similarity=0.620  Sum_probs=254.4

Q ss_pred             cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC
Q 021128           22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG  101 (317)
Q Consensus        22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~  101 (317)
                      ++.+|||+||||+++||.+|||||||+||++||||+|+.+++|+++|++|+|||||||||+||++||+||++++++++.+
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g   80 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG   80 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence            46799999999999999999999999999999999999888899999999999999999999999999999998743322


Q ss_pred             CCCCCCcccChhhhhhhccCCCCC--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc---------
Q 021128          102 GGRGGGMGVNIQDIFSSFFGGGPM--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK---------  169 (317)
Q Consensus       102 ~~~~~~~~~~~~d~F~~~fg~~~~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~---------  169 (317)
                      +++.++|+.++.|||++|||++..  .+.++++++.|+.+.|+|||+||+.|+++++.+++. .|..|.|+         
T Consensus        81 g~g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~  160 (371)
T COG0484          81 GFGFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPK  160 (371)
T ss_pred             CCCcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCC
Confidence            222233433789999999975532  334456789999999999999999999999999986 68889875         


Q ss_pred             --cccCccceEEEEEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC
Q 021128          170 --RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI  235 (317)
Q Consensus       170 --~~C~g~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~  235 (317)
                        ++|+|+|++.+.+.. |++++.+            +++|++|+|.+++.+.++++|+||+|+.+|++|+++|+|++++
T Consensus       161 tC~tC~G~G~v~~~~~~-g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~  239 (371)
T COG0484         161 TCPTCNGSGQVRTVQRT-GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGP  239 (371)
T ss_pred             cCCCCCCcCeEEEEEee-eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCC
Confidence              568899987665543 5554433            7899999999999999999999999999999999999999998


Q ss_pred             C-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128          236 D-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       236 ~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      + +++|||||+|.|++|+.|+|+|+|||++++||+.+|+||++++||||||+ ++|.++.-++.  |+.++|+|||+|.+
T Consensus       240 ~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~Gtq~--G~~~rl~gkG~p~~  316 (371)
T COG0484         240 NGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAGTQT--GEVFRLRGKGMPKL  316 (371)
T ss_pred             CCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCCCcc--CcEEEEcCCCcccc
Confidence            4 56799999999999999999999999999999999999999999999999 99999988886  89999999999975

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.3e-69  Score=512.59  Aligned_cols=283  Identities=28%  Similarity=0.525  Sum_probs=240.5

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG  103 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~  103 (317)
                      +.|||+||||+++||.+|||+|||+||++||||+|+.+++|+++|++|++||+||+||++|+.||+||++++.....   
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~---   78 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGA---   78 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCC---
Confidence            58999999999999999999999999999999999876779999999999999999999999999999987653211   


Q ss_pred             CCCCcc---cChhhhhhhccCCCCC-CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc---------
Q 021128          104 RGGGMG---VNIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK---------  169 (317)
Q Consensus       104 ~~~~~~---~~~~d~F~~~fg~~~~-~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~---------  169 (317)
                      ++++|.   .++.++|++|||++.. ....+..++.|+.+.|.|||+|+|+|+++++.+.|. .|..|.|+         
T Consensus        79 ~~~~~~~~f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~  158 (369)
T PRK14288         79 SQSDFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALET  158 (369)
T ss_pred             CccccccchhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcC
Confidence            111121   1345678888874321 111234578999999999999999999999999886 67778774         


Q ss_pred             -cccCccceEEEEEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCC
Q 021128          170 -RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKID  236 (317)
Q Consensus       170 -~~C~g~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~  236 (317)
                       +.|+|.|.+...+   |++++.+            ..+|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++.++
T Consensus       159 C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~  235 (369)
T PRK14288        159 CKQCNGQGQVFMRQ---GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEK  235 (369)
T ss_pred             CCCCCCCcEEEEEe---ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCC
Confidence             4577788665443   4443222            66799999999999999999999999999999999999999888


Q ss_pred             CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128          237 GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       237 ~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      +.+|||+|+|++++|+.|+|+|+|||++++|||+|||+|++++|+||||+.+.|+++.++++  |+.++|+|+|+|..
T Consensus       236 ~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~--g~~~~i~g~G~p~~  311 (369)
T PRK14288        236 GKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARD--RQTFAFRNEGVKHP  311 (369)
T ss_pred             CCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCC--CcEEEEcCCCCCCC
Confidence            88999999999999999999999999999999999999999999999999899999988876  69999999999964

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.1e-68  Score=506.86  Aligned_cols=286  Identities=28%  Similarity=0.467  Sum_probs=240.3

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG  102 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~  102 (317)
                      +.+|||++|||+++||.+|||+|||+||++||||+|++ +.|+++|++|++||+|||||+||+.||+||+++++...+.+
T Consensus         2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~   80 (372)
T PRK14296          2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFS   80 (372)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcC
Confidence            35899999999999999999999999999999999975 45899999999999999999999999999998765321100


Q ss_pred             CCCCCc----------c-cChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-
Q 021128          103 GRGGGM----------G-VNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-  169 (317)
Q Consensus       103 ~~~~~~----------~-~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~-  169 (317)
                      ++.++|          + .++.|+|++|||++.. ..++..++.|+.+.+.|||+|+|+|+++++.+.+. .|..|.|+ 
T Consensus        81 ~~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~-~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G  159 (372)
T PRK14296         81 SNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKS-DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSG  159 (372)
T ss_pred             cCCCccccccccccccccccchhhhhhhcCCCcc-CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCc
Confidence            000010          0 1456899999985421 12234578999999999999999999999999875 67788874 


Q ss_pred             ----------cccCccceEEEE-EecCceeEEE------------eeeccccCCCceEEeeCEEEEEEecCCCCCCCEEE
Q 021128          170 ----------RRCNCRNEVYHK-QIGPGMFQQM------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVV  226 (317)
Q Consensus       170 ----------~~C~g~G~~~~~-~~~~g~~~~~------------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~  226 (317)
                                +.|+|+|.+... +++++++++.            ..+.|+.|+|.+++.+.++++|.||+|+++|++|+
T Consensus       160 ~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~  239 (372)
T PRK14296        160 AESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIK  239 (372)
T ss_pred             cCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEE
Confidence                      457888876543 5666444321            26789999999999999999999999999999999


Q ss_pred             EcccCCCCC-CCCCccEEEEEEEeCCCCeeEe-CCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEE
Q 021128          227 FYEDGEPKI-DGEPGDLKFRIRTAPHDRFRRE-GNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSF  304 (317)
Q Consensus       227 ~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~-G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~  304 (317)
                      |+|+|++.+ ++.+|||+|+|+++||+.|+|+ |+|||++++|||+|||+|++++|+||||+ +.|.++.++++  |+.+
T Consensus       240 ~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~t~~--g~~~  316 (372)
T PRK14296        240 LSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKSINS--NELI  316 (372)
T ss_pred             EeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCccCC--CcEE
Confidence            999999874 6778999999999999999996 89999999999999999999999999998 99999988876  7999


Q ss_pred             EecCCcccc
Q 021128          305 AMTKKRIEV  313 (317)
Q Consensus       305 ~~~~k~~~~  313 (317)
                      +|+|||+|.
T Consensus       317 ri~GkGmP~  325 (372)
T PRK14296        317 IINNKGLYK  325 (372)
T ss_pred             EEcCCCCCc
Confidence            999999994

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=2.2e-67  Score=506.03  Aligned_cols=280  Identities=33%  Similarity=0.599  Sum_probs=241.1

Q ss_pred             hhhccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128           18 ALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ   97 (317)
Q Consensus        18 ~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   97 (317)
                      ++..+..+|||++|||+++||.+|||+|||+||++||||+|++    .++|++|++||+|||||.+|+.||+||++++..
T Consensus        21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~   96 (421)
T PTZ00037         21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEG   96 (421)
T ss_pred             ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhccc
Confidence            3445557899999999999999999999999999999999863    379999999999999999999999999987642


Q ss_pred             ccCCCCCCCCcccChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-------
Q 021128           98 HAAGGGRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-------  169 (317)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~-------  169 (317)
                      .    +  ++  .++.|+|+.|||++...  ....++.|+.+.|.|||+|+|+|+++++.+.+. +|..|.|+       
T Consensus        97 ~----~--~~--~d~~d~f~~~Fggg~~~--~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~  166 (421)
T PTZ00037         97 G----E--QP--ADASDLFDLIFGGGRKP--GGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAF  166 (421)
T ss_pred             C----C--CC--cchhhhHHHhhcccccc--ccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCC
Confidence            1    0  11  25789999999864211  234578999999999999999999999999886 57778774       


Q ss_pred             ---cccCccceEEE-EEecCceeEEEe---------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEccc
Q 021128          170 ---RRCNCRNEVYH-KQIGPGMFQQMT---------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYED  230 (317)
Q Consensus       170 ---~~C~g~G~~~~-~~~~~g~~~~~~---------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~  230 (317)
                         +.|+|.|.++. +++++ ++++++               .++|+.|+|.+++.+.++++|.||||+.+|++|+|+|+
T Consensus       167 ~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~  245 (421)
T PTZ00037        167 VDCKLCNGQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGE  245 (421)
T ss_pred             ccCCCCCCCCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecc
Confidence               45788886543 45565 443332               37899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeC--CcccCCCCcEEEecC
Q 021128          231 GEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK--VSMNMCFGTSFAMTK  308 (317)
Q Consensus       231 G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~--~v~~~~~~~~~~~~~  308 (317)
                      |++.+++.+|||+|+|+++||+.|+|+|+|||++++|||+|||+|+++.|+||||+.|.|+++  .|+++  |+.++|+|
T Consensus       246 Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~p--g~~~~I~g  323 (421)
T PTZ00037        246 ADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKP--GDIKVINN  323 (421)
T ss_pred             cCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCC--CcEEEeCC
Confidence            999999999999999999999999999999999999999999999999999999998999987  56776  69999999


Q ss_pred             Cccccc
Q 021128          309 KRIEVL  314 (317)
Q Consensus       309 k~~~~~  314 (317)
                      +|+|..
T Consensus       324 eGmP~~  329 (421)
T PTZ00037        324 EGMPTY  329 (421)
T ss_pred             CCcccC
Confidence            999964

>PRK14286 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.5e-66  Score=495.72  Aligned_cols=287  Identities=31%  Similarity=0.576  Sum_probs=241.4

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG  102 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~  102 (317)
                      ..+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+||++++..+.+++
T Consensus         2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~   81 (372)
T PRK14286          2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGF   81 (372)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCC
Confidence            45899999999999999999999999999999999987777999999999999999999999999999998875321111


Q ss_pred             CCC--CCcc---cChhhhhhhccCCCC-C----CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc--
Q 021128          103 GRG--GGMG---VNIQDIFSSFFGGGP-M----EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--  169 (317)
Q Consensus       103 ~~~--~~~~---~~~~d~F~~~fg~~~-~----~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~--  169 (317)
                      +.+  ++|+   .++.|+|++|||++. .    .......++.|+++.|.|||||+|+|+++++.+.+. .|..|.|+  
T Consensus        82 ~~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~  161 (372)
T PRK14286         82 GQGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGA  161 (372)
T ss_pred             CCCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCc
Confidence            111  1111   256799999998532 1    111234578999999999999999999999999886 57788774  


Q ss_pred             ---------cccCccceEEEEEecCceeEEE------------eeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEc
Q 021128          170 ---------RRCNCRNEVYHKQIGPGMFQQM------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFY  228 (317)
Q Consensus       170 ---------~~C~g~G~~~~~~~~~g~~~~~------------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~  228 (317)
                               +.|+|.|.+...+   |++++.            ..++|+.|+|.+++.+.++++|.||+|+++|++|+|+
T Consensus       162 ~~~~~~~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~  238 (372)
T PRK14286        162 SKGSSPTTCPDCGGSGQIRRTQ---GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVS  238 (372)
T ss_pred             CCCCCCccCCCCcCeEEEEEEe---ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEEC
Confidence                     3466777654443   444322            2678999999999999999999999999999999999


Q ss_pred             ccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEec
Q 021128          229 EDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMT  307 (317)
Q Consensus       229 g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~  307 (317)
                      |+|++.++ +.+|||||+|+++||+.|+|+|+||++++.|+|.+||+|+++.|+||||+.|.|+++..+++  |+.++|+
T Consensus       239 g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~--g~~~ri~  316 (372)
T PRK14286        239 GEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTES--GQVFRLK  316 (372)
T ss_pred             CccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCC--CcEEEEC
Confidence            99999875 45699999999999999999999999999999999999999999999999999999988876  6999999


Q ss_pred             CCccccc
Q 021128          308 KKRIEVL  314 (317)
Q Consensus       308 ~k~~~~~  314 (317)
                      |+|+|..
T Consensus       317 G~G~P~~  323 (372)
T PRK14286        317 GHGMPYL  323 (372)
T ss_pred             CCCCCCC
Confidence            9999964

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3e-66  Score=494.07  Aligned_cols=286  Identities=30%  Similarity=0.504  Sum_probs=240.9

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG  103 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~  103 (317)
                      .+|||+||||+++||.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|+.||+||+++++.+.++.+
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~   82 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAED   82 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCccc
Confidence            5799999999999999999999999999999999975 458899999999999999999999999999987753211100


Q ss_pred             --CCCCcccChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-----------
Q 021128          104 --RGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-----------  169 (317)
Q Consensus       104 --~~~~~~~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~-----------  169 (317)
                        ++++| .++.|+|++|||++.......+.++.|+++.|.|||+|+|+|+++++.+.+. .|..|.|+           
T Consensus        83 ~~~~~~~-~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C  161 (377)
T PRK14298         83 IFRGADF-GGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRC  161 (377)
T ss_pred             ccccCCc-CcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcC
Confidence              01122 1467899999985421112234578999999999999999999999999886 57778774           


Q ss_pred             cccCccceEEEEEecCceeEEEe-------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC-
Q 021128          170 RRCNCRNEVYHKQIGPGMFQQMT-------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI-  235 (317)
Q Consensus       170 ~~C~g~G~~~~~~~~~g~~~~~~-------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-  235 (317)
                      +.|+|.|.+...+..++++.+++             .++|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++.+ 
T Consensus       162 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~  241 (377)
T PRK14298        162 PTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSP  241 (377)
T ss_pred             CCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCC
Confidence            45788888766544454333332             6789999999999999999999999999999999999999964 


Q ss_pred             CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128          236 DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       236 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      ++.+|||+|+|+++||+.|+|+|+||+++++|||.|||+|++++|+||||+ +.|.++..+++  |+.++|+|+|+|..
T Consensus       242 ~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g~~~--g~~lri~g~G~p~~  317 (377)
T PRK14298        242 GAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPGTQT--HSVFRLKDKGMPRL  317 (377)
T ss_pred             CCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCCccc--CCEEEECCCCCCCC
Confidence            567899999999999999999999999999999999999999999999998 88888877775  69999999999964

>PRK14285 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.1e-66  Score=490.86  Aligned_cols=286  Identities=32%  Similarity=0.591  Sum_probs=241.6

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG  103 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~  103 (317)
                      .+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||+++++.+.+.++
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~   81 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG   81 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence            47999999999999999999999999999999999877778999999999999999999999999999987753211101


Q ss_pred             --CC-CCcc---cChhhhhhhccCCCCCC-cccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc------
Q 021128          104 --RG-GGMG---VNIQDIFSSFFGGGPME-EDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------  169 (317)
Q Consensus       104 --~~-~~~~---~~~~d~F~~~fg~~~~~-~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~------  169 (317)
                        ++ ++|+   .++.|+|++|||++... ......++.|+.++|.|||||+|+|+++++.+.|. .|..|.|+      
T Consensus        82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~  161 (365)
T PRK14285         82 FSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGT  161 (365)
T ss_pred             cCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCC
Confidence              11 1111   24679999999853211 11224578999999999999999999999999886 57778775      


Q ss_pred             -----cccCccceEEEEEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCC
Q 021128          170 -----RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGE  232 (317)
Q Consensus       170 -----~~C~g~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~  232 (317)
                           +.|+|+|.+..   ++|++++..            .++|+.|+|.+++.+.++++|.||||+++|++|+|+|+|+
T Consensus       162 ~~~~C~~C~G~G~~~~---~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~  238 (365)
T PRK14285        162 SPSICNMCNGSGRVMQ---GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGS  238 (365)
T ss_pred             CCccCCCccCceeEEe---cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccc
Confidence                 34667776543   456653322            6789999999999999999999999999999999999999


Q ss_pred             CCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcc
Q 021128          233 PKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRI  311 (317)
Q Consensus       233 ~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~  311 (317)
                      +.++ +.+|||+|+|++++|+.|+|+|+|||++++|||.|||+|++++|+||||+.|.|.++..+++  |+.++|+|+|+
T Consensus       239 ~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~--g~~irl~GkG~  316 (365)
T PRK14285        239 VNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTEN--DEQIIIKNEGM  316 (365)
T ss_pred             cCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCC--CcEEEECCCCc
Confidence            9886 45799999999999999999999999999999999999999999999999999999988775  69999999999


Q ss_pred             ccc
Q 021128          312 EVL  314 (317)
Q Consensus       312 ~~~  314 (317)
                      |.+
T Consensus       317 p~~  319 (365)
T PRK14285        317 PIL  319 (365)
T ss_pred             cCC
Confidence            864

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.7e-65  Score=488.53  Aligned_cols=290  Identities=31%  Similarity=0.527  Sum_probs=243.3

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG  101 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~  101 (317)
                      +.+|||++|||+++||.+|||+|||+||++||||+|+.+ .+|+++|++|++||++|+||++|+.||+||++++.....+
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~   81 (369)
T PRK14282          2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQE   81 (369)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccccccccc
Confidence            468999999999999999999999999999999999864 5689999999999999999999999999998876532111


Q ss_pred             CCCCCCc-c---cCh-----hhhhhhccCCCCC--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc
Q 021128          102 GGRGGGM-G---VNI-----QDIFSSFFGGGPM--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK  169 (317)
Q Consensus       102 ~~~~~~~-~---~~~-----~d~F~~~fg~~~~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~  169 (317)
                      .+++++| .   .++     .|+|++|||++..  .......++.|+.+.+.|||+|+|+|+++++.+.|. .|..|.|+
T Consensus        82 ~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~  161 (369)
T PRK14282         82 TESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGT  161 (369)
T ss_pred             CCCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCcc
Confidence            0111111 1   011     3789999975311  111234578999999999999999999999999886 57788774


Q ss_pred             -----------cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEE
Q 021128          170 -----------RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEV  225 (317)
Q Consensus       170 -----------~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i  225 (317)
                                 +.|+|.|.+.. +++++|++++.+            .+.|+.|+|.+++.+.++++|.||||+.+|++|
T Consensus       162 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i  241 (369)
T PRK14282        162 GVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVL  241 (369)
T ss_pred             CCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEE
Confidence                       45788887654 467888876544            567889999999999999999999999999999


Q ss_pred             EEcccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEE
Q 021128          226 VFYEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSF  304 (317)
Q Consensus       226 ~~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~  304 (317)
                      +|+|+|++++ ++.+|||+|+|+++||+.|+|+|+||+++++|||.||++|++++|+||||+.+.|.++..+++  |+.+
T Consensus       242 ~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~--g~~i  319 (369)
T PRK14282        242 RITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQP--ETVF  319 (369)
T ss_pred             EEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCC--CCEE
Confidence            9999999876 456799999999999999999999999999999999999999999999999899999887765  7999


Q ss_pred             EecCCccccc
Q 021128          305 AMTKKRIEVL  314 (317)
Q Consensus       305 ~~~~k~~~~~  314 (317)
                      +|+|+|+|..
T Consensus       320 ri~GkG~p~~  329 (369)
T PRK14282        320 RLKGKGLPNM  329 (369)
T ss_pred             EECCCCCCCC
Confidence            9999999864

>PRK14287 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.3e-65  Score=487.29  Aligned_cols=286  Identities=29%  Similarity=0.536  Sum_probs=242.0

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG  102 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~  102 (317)
                      +..|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||++|+||.+|+.||+||++++..+.++ 
T Consensus         2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~-   79 (371)
T PRK14287          2 SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGG-   79 (371)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCC-
Confidence            35799999999999999999999999999999999975 4588999999999999999999999999999877532111 


Q ss_pred             CCCCCcccChhhhhhhccCCCCC-CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-----------
Q 021128          103 GRGGGMGVNIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-----------  169 (317)
Q Consensus       103 ~~~~~~~~~~~d~F~~~fg~~~~-~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~-----------  169 (317)
                      ++.++|+ ++.|+|++|||++.. .......++.|+.+.+.|||+|+|+|+++++.+.+. .|..|.|+           
T Consensus        80 ~~~~~f~-~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C  158 (371)
T PRK14287         80 GGAGDFG-GFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETC  158 (371)
T ss_pred             CCCcccc-chHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCccc
Confidence            1112232 467999999985321 111234578999999999999999999999999886 57778764           


Q ss_pred             cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC-
Q 021128          170 RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI-  235 (317)
Q Consensus       170 ~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-  235 (317)
                      +.|+|+|.+.. .++++|++++..            .++|..|.|.+++.+.++++|.||+|+++|++|+|+|+|++.+ 
T Consensus       159 ~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~  238 (371)
T PRK14287        159 SHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVN  238 (371)
T ss_pred             CCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCC
Confidence            45788887654 467778876533            5568888888888888999999999999999999999999975 


Q ss_pred             CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128          236 DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       236 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      ++.+|||+|+|+++||+.|+|+|+||++++.|||.+|++|++++|+||||+ +.|.++..+++  |+.++|+|+|+|..
T Consensus       239 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g~~~--g~~~ri~g~G~p~~  314 (371)
T PRK14287        239 GGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAGTQT--GTSFRLRGKGVPNV  314 (371)
T ss_pred             CCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCCccC--CcEEEEcCCCccCC
Confidence            457899999999999999999999999999999999999999999999998 88888877775  69999999999964

>PRK14278 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.7e-65  Score=487.05  Aligned_cols=287  Identities=35%  Similarity=0.566  Sum_probs=240.5

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG  103 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~  103 (317)
                      .+|||+||||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||+||+||.+|+.||+||++....+..+++
T Consensus         2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g   80 (378)
T PRK14278          2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGG   80 (378)
T ss_pred             CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCC
Confidence            3799999999999999999999999999999999984 568999999999999999999999999999863321110101


Q ss_pred             CCCCcccChhhhhhhccCCCCCC-c-ccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-----------
Q 021128          104 RGGGMGVNIQDIFSSFFGGGPME-E-DEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-----------  169 (317)
Q Consensus       104 ~~~~~~~~~~d~F~~~fg~~~~~-~-~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~-----------  169 (317)
                      .+++|+ ++.|+|++|||++... . .....++.|+++.|.|||+|+|+|+++++.+.+. .|..|.|+           
T Consensus        81 ~~~~f~-~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C  159 (378)
T PRK14278         81 FGGGFG-GLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTC  159 (378)
T ss_pred             CCcCcC-chhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceec
Confidence            111222 4678999999853211 1 1134578999999999999999999999999886 57778774           


Q ss_pred             cccCccceEEEE-EecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCC
Q 021128          170 RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKID  236 (317)
Q Consensus       170 ~~C~g~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~  236 (317)
                      +.|+|+|.+... +.++|++++.+            .++|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++.++
T Consensus       160 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~  239 (378)
T PRK14278        160 DTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPG  239 (378)
T ss_pred             CCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCC
Confidence            357788876554 45566665432            67899999999999999999999999999999999999999885


Q ss_pred             -CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128          237 -GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       237 -~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~  314 (317)
                       +.+|||+|+|+++||+.|+|+|+||+++++|||.+|++|++++|+|||+..+.|.++..+++  |+.++|+|+|+|..
T Consensus       240 ~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~--g~~lrl~g~G~p~~  316 (378)
T PRK14278        240 GGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQP--GSVITLRGRGMPHL  316 (378)
T ss_pred             CCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCC--CcEEEECCCCCCCC
Confidence             46799999999999999999999999999999999999999999999888899999988775  79999999999964

>PRK14280 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.3e-65  Score=487.35  Aligned_cols=288  Identities=34%  Similarity=0.601  Sum_probs=242.1

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG  102 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~  102 (317)
                      +.+|||++|||+++||.+|||+|||+||++||||+|++. .|+++|++|++||++|+||.+|+.||+||++++..+.+++
T Consensus         2 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~   80 (376)
T PRK14280          2 AKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE-GADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGG   80 (376)
T ss_pred             CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCC
Confidence            357999999999999999999999999999999999854 4889999999999999999999999999998876432111


Q ss_pred             C-CCCCc--ccChhhhhhhccCCCCC-CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc--------
Q 021128          103 G-RGGGM--GVNIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--------  169 (317)
Q Consensus       103 ~-~~~~~--~~~~~d~F~~~fg~~~~-~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~--------  169 (317)
                      + ++++|  +++++|+|++|||++.. .......++.|+.+.|.|||||+|+|+++++.+.+. .|..|.|+        
T Consensus        81 ~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~  160 (376)
T PRK14280         81 GFGGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSK  160 (376)
T ss_pred             CCCCCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCC
Confidence            1 00111  12577999999975321 111234578999999999999999999999999886 57778774        


Q ss_pred             ---cccCccceEEEE-EecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCC
Q 021128          170 ---RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEP  233 (317)
Q Consensus       170 ---~~C~g~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~  233 (317)
                         +.|+|.|.+... +.++|++++..            .++|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|++
T Consensus       161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~  240 (376)
T PRK14280        161 ETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEP  240 (376)
T ss_pred             ccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccC
Confidence               457778876544 56677776432            56799999999999999999999999999999999999998


Q ss_pred             CCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccc
Q 021128          234 KID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIE  312 (317)
Q Consensus       234 ~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~  312 (317)
                      .++ +.+|||+|+|+++||+.|+|+|+|||+++.|||.|||+|+++.|+||||+ +.|.++..+++  |+.++|+|+|+|
T Consensus       241 ~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g~~~--g~~~~i~g~G~p  317 (376)
T PRK14280        241 GVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAGTQT--GTQFRLKGKGVP  317 (376)
T ss_pred             CCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCCCCC--CcEEEEcCCCCC
Confidence            764 56799999999999999999999999999999999999999999999997 88999887775  699999999999


Q ss_pred             cc
Q 021128          313 VL  314 (317)
Q Consensus       313 ~~  314 (317)
                      ..
T Consensus       318 ~~  319 (376)
T PRK14280        318 NV  319 (376)
T ss_pred             CC
Confidence            64

>PRK14276 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.5e-65  Score=486.45  Aligned_cols=287  Identities=31%  Similarity=0.581  Sum_probs=243.2

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC-
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG-  101 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~-  101 (317)
                      +.+|||+||||+++||.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|+.||+||+++++.+.++ 
T Consensus         2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~   80 (380)
T PRK14276          2 NNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGG   80 (380)
T ss_pred             CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCC
Confidence            35899999999999999999999999999999999985 4588999999999999999999999999999887642111 


Q ss_pred             C-C-CC----CCcccChhhhhhhccCCCCC-CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc----
Q 021128          102 G-G-RG----GGMGVNIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----  169 (317)
Q Consensus       102 ~-~-~~----~~~~~~~~d~F~~~fg~~~~-~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~----  169 (317)
                      . + ++    .++ .++.|+|++|||++.. .......++.|+.+.|.|||||+|+|+++++.+.+. .|..|.|+    
T Consensus        81 ~~~~~~~~~~~~~-~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~  159 (380)
T PRK14276         81 AGGFGGFDGSGGF-GGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKP  159 (380)
T ss_pred             CCCCCCccccccc-cchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCC
Confidence            0 1 00    112 2567999999985321 112234578999999999999999999999999886 57778774    


Q ss_pred             -------cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcc
Q 021128          170 -------RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYE  229 (317)
Q Consensus       170 -------~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g  229 (317)
                             +.|+|+|.+.. .++++|++++..            .++|+.|+|.+++.+.++++|.||+|+++|++|+|+|
T Consensus       160 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G  239 (380)
T PRK14276        160 GTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQG  239 (380)
T ss_pred             CCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEec
Confidence                   45778887654 467778877543            5679999999999999999999999999999999999


Q ss_pred             cCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecC
Q 021128          230 DGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTK  308 (317)
Q Consensus       230 ~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~  308 (317)
                      +|++.++ +.+|||+|+|+++||+.|+|+|+||+++++|||.|||+|++++|+||||+ +.|.++..+++  |+.++|+|
T Consensus       240 ~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g~~~--g~~~~i~g  316 (380)
T PRK14276        240 QGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAGTQT--GKKFRLRG  316 (380)
T ss_pred             cccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCCCCC--CCEEEECC
Confidence            9999764 46799999999999999999999999999999999999999999999998 88888877765  79999999


Q ss_pred             Cccccc
Q 021128          309 KRIEVL  314 (317)
Q Consensus       309 k~~~~~  314 (317)
                      +|+|.+
T Consensus       317 ~G~p~~  322 (380)
T PRK14276        317 KGAPKL  322 (380)
T ss_pred             CCcCCC
Confidence            999974

>PRK14277 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.2e-65  Score=486.16  Aligned_cols=289  Identities=35%  Similarity=0.585  Sum_probs=241.4

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG  102 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~  102 (317)
                      +.+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||+++++....++
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~   82 (386)
T PRK14277          3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ   82 (386)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence            45899999999999999999999999999999999987777899999999999999999999999999998875321111


Q ss_pred             C----CC---CCcc---cChhhhhhhccCCC----CCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCC
Q 021128          103 G----RG---GGMG---VNIQDIFSSFFGGG----PMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAP  167 (317)
Q Consensus       103 ~----~~---~~~~---~~~~d~F~~~fg~~----~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~  167 (317)
                      +    ++   +++.   .++.|+|++||++.    .........++.|+++.|.|||+|+|+|+++++.+.|. .|..|.
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~  162 (386)
T PRK14277         83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCK  162 (386)
T ss_pred             CCcCCCCccccCccccccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCC
Confidence            0    01   1111   13457788777631    11111224578999999999999999999999999886 566787


Q ss_pred             Cc-----------cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCC
Q 021128          168 GK-----------RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQ  223 (317)
Q Consensus       168 g~-----------~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~  223 (317)
                      |+           +.|+|.|.+.. .++++|++++..            .++|+.|+|.+++.+.++++|.||+|+++|+
T Consensus       163 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  242 (386)
T PRK14277        163 GSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQ  242 (386)
T ss_pred             CCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCc
Confidence            64           45777887654 467788877644            5679999999999999999999999999999


Q ss_pred             EEEEcccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCc
Q 021128          224 EVVFYEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGT  302 (317)
Q Consensus       224 ~i~~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~  302 (317)
                      +|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||+++++|||+|||+|+++.|+||||+ +.|.++..+++  |+
T Consensus       243 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~--g~  319 (386)
T PRK14277        243 MITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEGTQT--GT  319 (386)
T ss_pred             EEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCCCCC--CC
Confidence            999999999865 456799999999999999999999999999999999999999999999998 89999877764  79


Q ss_pred             EEEecCCccccc
Q 021128          303 SFAMTKKRIEVL  314 (317)
Q Consensus       303 ~~~~~~k~~~~~  314 (317)
                      .++|+|+|+|..
T Consensus       320 ~~ri~g~G~p~~  331 (386)
T PRK14277        320 KFRLRGKGIPHL  331 (386)
T ss_pred             EEEECCCCCCCC
Confidence            999999999964

>PRK14297 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.1e-64  Score=482.74  Aligned_cols=289  Identities=33%  Similarity=0.598  Sum_probs=242.4

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG  102 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~  102 (317)
                      +..|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||+++++.+.+.+
T Consensus         2 ~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~   81 (380)
T PRK14297          2 ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFG   81 (380)
T ss_pred             CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCC
Confidence            45799999999999999999999999999999999987777999999999999999999999999999998875321111


Q ss_pred             -CCCCCcc----cChhhhhhhccCCCC-C--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc----
Q 021128          103 -GRGGGMG----VNIQDIFSSFFGGGP-M--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----  169 (317)
Q Consensus       103 -~~~~~~~----~~~~d~F~~~fg~~~-~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~----  169 (317)
                       ++.++|.    .++.|+|++|||++. .  .......++.|+++.|.|||||+|+|+++++.+.+. .|..|.|+    
T Consensus        82 ~~~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~  161 (380)
T PRK14297         82 SGGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKP  161 (380)
T ss_pred             CCCCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccC
Confidence             0101111    146799999998531 1  111234578999999999999999999999999886 57778764    


Q ss_pred             -------cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcc
Q 021128          170 -------RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYE  229 (317)
Q Consensus       170 -------~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g  229 (317)
                             +.|+|.|.+.. ++.++|++++..            .++|..|+|.+++.+.++++|.||||+++|++|+|+|
T Consensus       162 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g  241 (380)
T PRK14297        162 GTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRG  241 (380)
T ss_pred             CCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEec
Confidence                   45778887654 456677665432            5678888888888999999999999999999999999


Q ss_pred             cCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecC
Q 021128          230 DGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTK  308 (317)
Q Consensus       230 ~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~  308 (317)
                      +|++.+. +.+|||+|+|++++|+.|+|+|+||+++++|||+|||+|++++|+||||+ +.|.++..+++  |+.++|+|
T Consensus       242 ~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g~~~--g~~~ri~g  318 (380)
T PRK14297        242 QGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAGTQP--GTVFRLKG  318 (380)
T ss_pred             CccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCCcCC--CCEEEEcC
Confidence            9998764 56899999999999999999999999999999999999999999999997 89999888775  79999999


Q ss_pred             Cccccc
Q 021128          309 KRIEVL  314 (317)
Q Consensus       309 k~~~~~  314 (317)
                      +|+|..
T Consensus       319 ~G~p~~  324 (380)
T PRK14297        319 KGVPRV  324 (380)
T ss_pred             CCcCCC
Confidence            999953

>PRK14279 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.9e-64  Score=482.61  Aligned_cols=287  Identities=28%  Similarity=0.460  Sum_probs=233.8

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccC--
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAA--  100 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~--  100 (317)
                      +.+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+|||||+||++||+||+++...+..  
T Consensus         7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~   86 (392)
T PRK14279          7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR   86 (392)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence            358999999999999999999999999999999999877779999999999999999999999999999753221100  


Q ss_pred             ---CCCCCCCc-------ccC---------------hhhhhhhccCCCCC-CcccccccCCceEEeecccHHHHhcCcee
Q 021128          101 ---GGGRGGGM-------GVN---------------IQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSL  154 (317)
Q Consensus       101 ---~~~~~~~~-------~~~---------------~~d~F~~~fg~~~~-~~~~~~~kg~di~~~l~vtlee~~~G~~~  154 (317)
                         ++++.++|       +.+               +.|+|+.|||++.. .......++.|+++.|.|||+|+|+|+++
T Consensus        87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~  166 (392)
T PRK14279         87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTM  166 (392)
T ss_pred             cccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEE
Confidence               00000111       011               34667777764321 11223457899999999999999999999


Q ss_pred             EEEeeee-eecCCCCc-----------cccCccceEEEEEecCceeE----------EEeeeccccCCCceEEeeCEEEE
Q 021128          155 KVWREKN-VIKPAPGK-----------RRCNCRNEVYHKQIGPGMFQ----------QMTEQVCDQCQNVKYEREGYFVT  212 (317)
Q Consensus       155 ~v~~~r~-v~~~c~g~-----------~~C~g~G~~~~~~~~~g~~~----------~~~~~~C~~C~G~g~~~~~~~~~  212 (317)
                      ++.+.+. .|..|.|+           +.|+|+|.+...+ ++..++          +...++|+.|+|.+++.+.++++
T Consensus       167 ~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~  245 (392)
T PRK14279        167 PLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ-GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTIN  245 (392)
T ss_pred             EEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe-cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeE
Confidence            9999886 57778775           4577777665543 221111          12267899999999999999999


Q ss_pred             EEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEe
Q 021128          213 VDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIS  291 (317)
Q Consensus       213 V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~  291 (317)
                      |.||||+++|++|+|+|+|++.++ +.+|||+|+|+++||+.|+|+|+||+++++|||.+|++|++++|+||||+ +.|.
T Consensus       246 V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~-i~v~  324 (392)
T PRK14279        246 VRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGP-VGVK  324 (392)
T ss_pred             EEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCce-EEEE
Confidence            999999999999999999999875 45799999999999999999999999999999999999999999999998 8899


Q ss_pred             eCCcccCCCCcEEEecCCcccc
Q 021128          292 TKVSMNMCFGTSFAMTKKRIEV  313 (317)
Q Consensus       292 ~~~v~~~~~~~~~~~~~k~~~~  313 (317)
                      ++..+++  |+.++|+|+|+|.
T Consensus       325 Ip~g~~~--g~~iri~g~G~p~  344 (392)
T PRK14279        325 VPAGTAD--GRILRVRGRGVPK  344 (392)
T ss_pred             ECCCCCC--CCEEEECCCCCCC
Confidence            9877765  7999999999995

>PRK14284 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.1e-64  Score=482.88  Aligned_cols=285  Identities=32%  Similarity=0.535  Sum_probs=236.5

Q ss_pred             CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC-CC
Q 021128           25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG-GG  103 (317)
Q Consensus        25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~-~~  103 (317)
                      .|||+||||+++||.+|||+|||+||++||||+|++++.|+++|++|++||++|+|+.+|++||+||++++..+.++ ++
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~   80 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG   80 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence            48999999999999999999999999999999999877799999999999999999999999999999876432111 00


Q ss_pred             CC-CC-----------cc---cChhhhhhhccCCCC---C--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-e
Q 021128          104 RG-GG-----------MG---VNIQDIFSSFFGGGP---M--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-V  162 (317)
Q Consensus       104 ~~-~~-----------~~---~~~~d~F~~~fg~~~---~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v  162 (317)
                      ++ ++           |+   ..+.|+|++|||+..   .  .......++.|+.+.|.|||||+|+|+++++.+.+. .
T Consensus        81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~  160 (391)
T PRK14284         81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKS  160 (391)
T ss_pred             CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeecc
Confidence            00 00           11   012578899997421   1  111234578999999999999999999999999875 5


Q ss_pred             ecCCCCc-----------cccCccceEEEEEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCC
Q 021128          163 IKPAPGK-----------RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGM  219 (317)
Q Consensus       163 ~~~c~g~-----------~~C~g~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~  219 (317)
                      |..|.|+           +.|+|.|.+...+   |++++..            .++|+.|+|.+++.+.++++|.||||+
T Consensus       161 C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~  237 (391)
T PRK14284        161 CDACSGSGANSSQGIKVCDRCKGSGQVVQSR---GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGV  237 (391)
T ss_pred             CCCCcccccCCCCCCeecCccCCeeEEEEEe---ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCC
Confidence            7778764           3467777665443   4443221            677999999999999999999999999


Q ss_pred             CCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCC-CCeEEEeeCCccc
Q 021128          220 QDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLD-EHLVDISTKVSMN  297 (317)
Q Consensus       220 ~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tld-G~~i~i~~~~v~~  297 (317)
                      .+|++|+|+|+|+++++ +.+|||+|+|+++||+.|+|+|+||+++++|||.||++|++++|+||| |+.+.|.++..++
T Consensus       238 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~  317 (391)
T PRK14284        238 DSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQ  317 (391)
T ss_pred             CCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccC
Confidence            99999999999999874 678999999999999999999999999999999999999999999999 6789999998887


Q ss_pred             CCCCcEEEecCCccccc
Q 021128          298 MCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       298 ~~~~~~~~~~~k~~~~~  314 (317)
                      +  |+.++|+|+|+|..
T Consensus       318 ~--g~~~~i~g~G~p~~  332 (391)
T PRK14284        318 S--GTILKVRGQGFPNV  332 (391)
T ss_pred             C--CeEEEECCCCCCCC
Confidence            6  69999999999964

>PRK14301 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.3e-64  Score=478.92  Aligned_cols=286  Identities=32%  Similarity=0.557  Sum_probs=238.8

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG  102 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~  102 (317)
                      +.+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+||+++++.+.+++
T Consensus         2 ~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~   81 (373)
T PRK14301          2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFG   81 (373)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCC
Confidence            35899999999999999999999999999999999987777899999999999999999999999999998775321111


Q ss_pred             CCCC--CcccChhhhhhhccCCCCC--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc--------
Q 021128          103 GRGG--GMGVNIQDIFSSFFGGGPM--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--------  169 (317)
Q Consensus       103 ~~~~--~~~~~~~d~F~~~fg~~~~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~--------  169 (317)
                      +..+  .+..++.|+|++|||++..  ....+..++.|+.+.|.|||||+|+|+++++.+.+. .|..|.|+        
T Consensus        82 g~~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~  161 (373)
T PRK14301         82 GFSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSP  161 (373)
T ss_pred             CcccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCC
Confidence            1000  0011356889998873211  112234578999999999999999999999999886 57778774        


Q ss_pred             ---cccCccceEEEEEecCceeEEE------------eeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCC
Q 021128          170 ---RRCNCRNEVYHKQIGPGMFQQM------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPK  234 (317)
Q Consensus       170 ---~~C~g~G~~~~~~~~~g~~~~~------------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~  234 (317)
                         +.|+|+|.+...+   |++++.            ..+.|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|++.
T Consensus       162 ~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~  238 (373)
T PRK14301        162 ETCRHCGGSGQVRQSQ---GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPG  238 (373)
T ss_pred             cccCCccCeeEEEEEe---eeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCC
Confidence               4577777665432   444332            2678999999999999999999999999999999999999987


Q ss_pred             C-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcccc
Q 021128          235 I-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEV  313 (317)
Q Consensus       235 ~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~  313 (317)
                      + ++.+|||+|+|++++|+.|+|+|+||+++++|||.+||+|++++|+||||+ +.|.++..+++  |+.++|+|+|+|.
T Consensus       239 ~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g~~~--g~~~ri~g~G~p~  315 (373)
T PRK14301        239 VHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKGTQS--GEVFRLRGKGLPY  315 (373)
T ss_pred             CCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCCcCC--CcEEEEcCCCCCC
Confidence            6 466899999999999999999999999999999999999999999999998 99999988875  7999999999996


Q ss_pred             c
Q 021128          314 L  314 (317)
Q Consensus       314 ~  314 (317)
                      .
T Consensus       316 ~  316 (373)
T PRK14301        316 L  316 (373)
T ss_pred             C
Confidence            4

>PRK14294 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.5e-64  Score=477.63  Aligned_cols=284  Identities=34%  Similarity=0.608  Sum_probs=237.8

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG  102 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~  102 (317)
                      +.+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++.....+ 
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~-   80 (366)
T PRK14294          2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFS-   80 (366)
T ss_pred             CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCC-
Confidence            4689999999999999999999999999999999998777789999999999999999999999999999887532111 


Q ss_pred             CCCCCcc---cChhhhhhhccC-CCCC--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc------
Q 021128          103 GRGGGMG---VNIQDIFSSFFG-GGPM--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------  169 (317)
Q Consensus       103 ~~~~~~~---~~~~d~F~~~fg-~~~~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~------  169 (317)
                      + .++|.   .++.|+|++||| ++..  .......++.|+++.|.|||||+|+|+++++.+.+. .|..|.|+      
T Consensus        81 ~-~~~~~~~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~  159 (366)
T PRK14294         81 G-FSGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGT  159 (366)
T ss_pred             C-cCccccchhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCC
Confidence            1 11221   246689999997 3211  111234578999999999999999999999999886 57778774      


Q ss_pred             -----cccCccceEEEEEecCceeEEE------------eeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCC
Q 021128          170 -----RRCNCRNEVYHKQIGPGMFQQM------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGE  232 (317)
Q Consensus       170 -----~~C~g~G~~~~~~~~~g~~~~~------------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~  232 (317)
                           +.|+|.|.+....   |++++.            ..+.|+.|+|.+++.+.++++|.||||+++|++|+|+|+|+
T Consensus       160 ~~~~C~~C~G~G~~~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~  236 (366)
T PRK14294        160 SPTTCPQCGGSGQVTQSQ---GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGE  236 (366)
T ss_pred             CcccCCCcCCeEEEEEEe---eeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCcc
Confidence                 4567777654332   444322            16789999999999999999999999999999999999999


Q ss_pred             CCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcc
Q 021128          233 PKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRI  311 (317)
Q Consensus       233 ~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~  311 (317)
                      +.+ ++.+|||+|+|+++||+.|+|+|+||++++.|||.+||+|++++|+||||+ +.|.++..+++  |+.++|+|+|+
T Consensus       237 ~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~--g~~iri~G~G~  313 (366)
T PRK14294        237 AGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKGTQP--GDIFRFKGKGI  313 (366)
T ss_pred             CCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCCcCC--CCEEEECCCCC
Confidence            875 467899999999999999999999999999999999999999999999997 68888877764  79999999999


Q ss_pred             ccc
Q 021128          312 EVL  314 (317)
Q Consensus       312 ~~~  314 (317)
                      |..
T Consensus       314 p~~  316 (366)
T PRK14294        314 PSL  316 (366)
T ss_pred             CCC
Confidence            864

>PRK14295 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8e-64  Score=479.17  Aligned_cols=284  Identities=32%  Similarity=0.565  Sum_probs=236.4

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccc----cCcccccccc
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDT----YGEEGLKQHA   99 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~----~G~~~~~~~~   99 (317)
                      .+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+    ||++++..+.
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~   87 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGP   87 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCC
Confidence            589999999999999999999999999999999998777799999999999999999999999999    9988775311


Q ss_pred             CCC-CCC------------------CCcccChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeee
Q 021128          100 AGG-GRG------------------GGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREK  160 (317)
Q Consensus       100 ~~~-~~~------------------~~~~~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r  160 (317)
                      .++ +++                  ++++..+.|+|++|||++.  ...+..++.|+++.|.|||||+|+|++++|.+.+
T Consensus        88 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~--~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r  165 (389)
T PRK14295         88 GGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGG--RRTQPRRGADVESEVTLSFTEAIDGATVPLRLTS  165 (389)
T ss_pred             CCCCCCCCCcccccccccccccccccccccchhhhhcccccCCC--CCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeec
Confidence            100 000                  0111124567777776432  1223457899999999999999999999999988


Q ss_pred             e-eecCCCCc-----------cccCccceEEEEEecCceeEE-----------EeeeccccCCCceEEeeCEEEEEEecC
Q 021128          161 N-VIKPAPGK-----------RRCNCRNEVYHKQIGPGMFQQ-----------MTEQVCDQCQNVKYEREGYFVTVDIEK  217 (317)
Q Consensus       161 ~-v~~~c~g~-----------~~C~g~G~~~~~~~~~g~~~~-----------~~~~~C~~C~G~g~~~~~~~~~V~Ip~  217 (317)
                      . .|..|.|+           +.|+|+|.+...+ + ++.++           ...++|+.|.|.+++.+.++++|.||+
T Consensus       166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-g-~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~  243 (389)
T PRK14295        166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS-G-GFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPA  243 (389)
T ss_pred             cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe-c-ceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCC
Confidence            6 57778764           3567777665544 2 22221           126789999999999999999999999


Q ss_pred             CCCCCCEEEEcccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcc
Q 021128          218 GMQDGQEVVFYEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSM  296 (317)
Q Consensus       218 G~~~G~~i~~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~  296 (317)
                      |+++|++|+|+|+|++.+ ++.+|||+|+|+++||+.|+|+|+||+++++|||.+||+|++++|+||||+.+.|.++..+
T Consensus       244 G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~  323 (389)
T PRK14295        244 GVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGT  323 (389)
T ss_pred             CCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCcc
Confidence            999999999999999875 4567999999999999999999999999999999999999999999999999999999887


Q ss_pred             cCCCCcEEEecCCcccc
Q 021128          297 NMCFGTSFAMTKKRIEV  313 (317)
Q Consensus       297 ~~~~~~~~~~~~k~~~~  313 (317)
                      ++  |+.++|+|+|+|.
T Consensus       324 ~~--g~~iri~G~G~p~  338 (389)
T PRK14295        324 PN--GRVLRVRGKGAVR  338 (389)
T ss_pred             CC--CcEEEECCCCcCC
Confidence            75  7999999999985

>PRK10767 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.9e-64  Score=477.14  Aligned_cols=286  Identities=34%  Similarity=0.611  Sum_probs=238.4

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG  102 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~  102 (317)
                      +.+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++....+++
T Consensus         2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~   81 (371)
T PRK10767          2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGG   81 (371)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCC
Confidence            46899999999999999999999999999999999987777899999999999999999999999999998775321111


Q ss_pred             CCC--CCcccChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc----------
Q 021128          103 GRG--GGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------  169 (317)
Q Consensus       103 ~~~--~~~~~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~----------  169 (317)
                      +.+  .+|+..+.|+|++|||++.........++.|+.+.|.|||||+|+|+++++.+.+. .|..|.|+          
T Consensus        82 ~~~~~~~~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~  161 (371)
T PRK10767         82 GFGGGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKT  161 (371)
T ss_pred             CCCCccccccchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCcc
Confidence            111  12221256788888875321112234578999999999999999999999999886 57778774          


Q ss_pred             -cccCccceEEEEEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC-
Q 021128          170 -RRCNCRNEVYHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI-  235 (317)
Q Consensus       170 -~~C~g~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-  235 (317)
                       +.|+|+|.+...+   |++++..            .+.|+.|+|.+++.+.++++|.||||+.+|++|+|+|+|++.+ 
T Consensus       162 C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~  238 (371)
T PRK10767        162 CPTCHGAGQVRMQQ---GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGER  238 (371)
T ss_pred             CCCCCCeeEEEEee---ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCC
Confidence             4567777655443   4443221            5679999999999999999999999999999999999999864 


Q ss_pred             CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128          236 DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       236 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      ++.+|||+|+|+++||+.|+|+|+||++++.|||.+||+|++++|+|||| .+.|.++..+++  |+.++|+|+|+|..
T Consensus       239 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG-~i~v~ip~g~~~--g~~~~i~g~G~p~~  314 (371)
T PRK10767        239 GGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDG-RVKLKIPEGTQT--GKLFRLRGKGVKSV  314 (371)
T ss_pred             CCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCC-cEEEEeCCCCCC--CCEEEECCCCcCCC
Confidence            46789999999999999999999999999999999999999999999999 489999887775  79999999999964

>PRK14281 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.8e-63  Score=478.26  Aligned_cols=288  Identities=35%  Similarity=0.590  Sum_probs=238.9

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC-C
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG-G  102 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~-~  102 (317)
                      .+|||+||||+++||.+|||+|||+||++||||+|+++.+|+++|++|++||++|+||.+|+.||+||++++...... +
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~   81 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG   81 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence            479999999999999999999999999999999998777789999999999999999999999999999877532111 1


Q ss_pred             CCC-CCcccChhhhh---hhccCCCC---------------CCcc----cccccCCceEEeecccHHHHhcCceeEEEee
Q 021128          103 GRG-GGMGVNIQDIF---SSFFGGGP---------------MEED----EKIVKGDDVIVELDATLEDLYMGGSLKVWRE  159 (317)
Q Consensus       103 ~~~-~~~~~~~~d~F---~~~fg~~~---------------~~~~----~~~~kg~di~~~l~vtlee~~~G~~~~v~~~  159 (317)
                      +++ ++.+.++.|+|   ++|||++.               ....    ....++.|+++.|.|||||+|+|+++++.+.
T Consensus        82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~  161 (397)
T PRK14281         82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK  161 (397)
T ss_pred             CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence            110 00112455555   57887421               0000    1124689999999999999999999999998


Q ss_pred             ee-eecCCCCc----------cccCccceEEEE-EecCceeEEEe------------eeccccCCCceEEeeCEEEEEEe
Q 021128          160 KN-VIKPAPGK----------RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDI  215 (317)
Q Consensus       160 r~-v~~~c~g~----------~~C~g~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~I  215 (317)
                      +. .|..|.|+          +.|+|.|.+... +.++|++++.+            .++|+.|+|.+++.+.++++|.|
T Consensus       162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I  241 (397)
T PRK14281        162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTV  241 (397)
T ss_pred             eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEec
Confidence            86 57678774          457788876543 56667765432            67899999999999999999999


Q ss_pred             cCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCC
Q 021128          216 EKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKV  294 (317)
Q Consensus       216 p~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~  294 (317)
                      |||+++|++|+|+|+|++.++ +.+|||+|+|+++||+.|+|+|+||+++++|||.|||+|++++|+||||+ +.|.++.
T Consensus       242 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~  320 (397)
T PRK14281        242 PAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLTIPA  320 (397)
T ss_pred             CCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEEeCC
Confidence            999999999999999999874 57899999999999999999999999999999999999999999999998 8899887


Q ss_pred             cccCCCCcEEEecCCccccc
Q 021128          295 SMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       295 v~~~~~~~~~~~~~k~~~~~  314 (317)
                      .+++  |+.++|+|+|+|..
T Consensus       321 g~~~--G~~~ri~g~G~P~~  338 (397)
T PRK14281        321 GTQP--ETMLRIPGKGIGHL  338 (397)
T ss_pred             ccCC--CcEEEEcCCCCCCC
Confidence            7765  79999999999964

>PRK14291 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.6e-63  Score=473.49  Aligned_cols=285  Identities=32%  Similarity=0.569  Sum_probs=235.1

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG  103 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~  103 (317)
                      .+|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||++||||.+|+.||+||++++.......+
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~   80 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ   80 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence            5899999999999999999999999999999999986 458899999999999999999999999999987653211111


Q ss_pred             CCCCc----ccChhhhhhhcc---CCC--CC------Cc---ccccccCCceEEeecccHHHHhcCceeEEEeeee-eec
Q 021128          104 RGGGM----GVNIQDIFSSFF---GGG--PM------EE---DEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIK  164 (317)
Q Consensus       104 ~~~~~----~~~~~d~F~~~f---g~~--~~------~~---~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~  164 (317)
                      +..+|    ..++.|+|++||   |.+  +.      ..   .....++.|+.+.|.|||+|+|+|+++++.+.+. .|.
T Consensus        81 ~~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~  160 (382)
T PRK14291         81 GQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCE  160 (382)
T ss_pred             cccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCC
Confidence            11111    125667777773   211  00      00   1123478999999999999999999999999875 577


Q ss_pred             CCCCc-----------cccCccceEEEEEecCceeEEE-----------eeeccccCCCceEEeeCEEEEEEecCCCCCC
Q 021128          165 PAPGK-----------RRCNCRNEVYHKQIGPGMFQQM-----------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDG  222 (317)
Q Consensus       165 ~c~g~-----------~~C~g~G~~~~~~~~~g~~~~~-----------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G  222 (317)
                      .|.|+           +.|+|+|.+....   |++++.           ..++|+.|+|.+++.+.++++|.||||+.+|
T Consensus       161 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G  237 (382)
T PRK14291        161 ACGGTGYDPGSGEKVCPTCGGSGEIYQRG---GFFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPPGVDNG  237 (382)
T ss_pred             CCccccCCCCCCCccCCCCCCceEEEEec---ceEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCCCCCCC
Confidence            78764           4567777654431   333221           2678999999999999999999999999999


Q ss_pred             CEEEEcccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCC
Q 021128          223 QEVVFYEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFG  301 (317)
Q Consensus       223 ~~i~~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~  301 (317)
                      ++|+|+|+|++++ ++.+|||||+|+++||+.|+|+|+||++++.|||.||++|++++|+|+||+.+.|.++..+++  |
T Consensus       238 ~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~--G  315 (382)
T PRK14291        238 SKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKE--G  315 (382)
T ss_pred             CEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCC--C
Confidence            9999999999976 578999999999999999999999999999999999999999999999999899999988775  6


Q ss_pred             cEEEecCCccccc
Q 021128          302 TSFAMTKKRIEVL  314 (317)
Q Consensus       302 ~~~~~~~k~~~~~  314 (317)
                      +.++|+|+|+|..
T Consensus       316 ~~i~i~G~G~p~~  328 (382)
T PRK14291        316 DKIRVPGKGMPRL  328 (382)
T ss_pred             CEEEECCCCCCCC
Confidence            9999999999964

>PRK14290 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.7e-62  Score=467.27  Aligned_cols=284  Identities=29%  Similarity=0.472  Sum_probs=238.2

Q ss_pred             CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128           25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE-EANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG  103 (317)
Q Consensus        25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~  103 (317)
                      .|||+||||+++||.+|||+|||+||++||||+|+++. +|+++|++|++||++|+|+.+|+.||+||+.++....++.+
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~   82 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN   82 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence            79999999999999999999999999999999998664 68999999999999999999999999999987652111100


Q ss_pred             CC--CCcccChhhhhhhccCCCC--------CCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc---
Q 021128          104 RG--GGMGVNIQDIFSSFFGGGP--------MEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK---  169 (317)
Q Consensus       104 ~~--~~~~~~~~d~F~~~fg~~~--------~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~---  169 (317)
                      .+  .++ .++.|+|++|||+..        ........++.|+++.|.|||+|+|+|+++++.+.+. .|..|.|+   
T Consensus        83 ~~~~~~~-~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~  161 (365)
T PRK14290         83 WDNFTHF-SDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAK  161 (365)
T ss_pred             ccccccc-cchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCC
Confidence            00  112 267899999998521        0111112347899999999999999999999999886 56678764   


Q ss_pred             -------cccCccceEEEEEecCceeEEE--------------eeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEc
Q 021128          170 -------RRCNCRNEVYHKQIGPGMFQQM--------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFY  228 (317)
Q Consensus       170 -------~~C~g~G~~~~~~~~~g~~~~~--------------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~  228 (317)
                             +.|+|.|.+...+ ++|++.+.              ..++|+.|+|.+++.+.++++|.||||+.+|++|+|+
T Consensus       162 ~~~~~~C~~C~G~G~~~~~~-~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~  240 (365)
T PRK14290        162 NGKLITCPTCHGTGQQRIVR-GQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVK  240 (365)
T ss_pred             CCCCccCCCCCCcCEEEEEe-ccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEc
Confidence                   4577888655444 46665332              2678999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecC
Q 021128          229 EDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTK  308 (317)
Q Consensus       229 g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~  308 (317)
                      |+|++ +++.+|||+|+|++++|+.|+|+|+||+++++|||.+|++|++++|+|++|+ +.|.++..+++  |+.++|+|
T Consensus       241 g~G~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g~~~--g~~iri~g  316 (365)
T PRK14290        241 GKGQS-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEGTQP--GEVLKIKG  316 (365)
T ss_pred             cccCC-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCccCC--CcEEEECC
Confidence            99997 6788999999999999999999999999999999999999999999999996 99999988875  79999999


Q ss_pred             Cccccc
Q 021128          309 KRIEVL  314 (317)
Q Consensus       309 k~~~~~  314 (317)
                      +|+|..
T Consensus       317 ~G~p~~  322 (365)
T PRK14290        317 AGMPHL  322 (365)
T ss_pred             CCCCCC
Confidence            999864

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=100.00  E-value=5.9e-62  Score=462.61  Aligned_cols=284  Identities=36%  Similarity=0.611  Sum_probs=240.2

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCCCC
Q 021128           26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRG  105 (317)
Q Consensus        26 ~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~~~  105 (317)
                      |||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+|+.+|+.||+||+++++....+.+++
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~   79 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGG   79 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCC
Confidence            7999999999999999999999999999999997 445889999999999999999999999999998875421110100


Q ss_pred             -C-----CcccChhhhhhhccCCCCC--C-cccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc------
Q 021128          106 -G-----GMGVNIQDIFSSFFGGGPM--E-EDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------  169 (317)
Q Consensus       106 -~-----~~~~~~~d~F~~~fg~~~~--~-~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~------  169 (317)
                       .     +| .++.|+|++|||++..  . ......++.|+.+.|.|||||+|+|+++++.+.+. .|..|.|+      
T Consensus        80 ~~~~~~~~~-~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~  158 (354)
T TIGR02349        80 FNGFDIGFF-GDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGT  158 (354)
T ss_pred             cCCccccCc-CchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCC
Confidence             1     12 2467899999985321  1 12234578999999999999999999999999886 57778774      


Q ss_pred             -----cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccC
Q 021128          170 -----RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDG  231 (317)
Q Consensus       170 -----~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G  231 (317)
                           +.|+|.|.+.. ..+++|++++..            ..+|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G  238 (354)
T TIGR02349       159 DPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKG  238 (354)
T ss_pred             CCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCc
Confidence                 45777887654 467888887643            567888899999999999999999999999999999999


Q ss_pred             CCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCc
Q 021128          232 EPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKR  310 (317)
Q Consensus       232 ~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~  310 (317)
                      ++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|||.|||+|+++.|+|||| .+.|.++..+++  |+.++|+|+|
T Consensus       239 ~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g~~~--g~~~~i~g~G  315 (354)
T TIGR02349       239 NAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAGTQS--GTVFRLKGKG  315 (354)
T ss_pred             cCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCcccC--CcEEEECCCC
Confidence            9865 45689999999999999999999999999999999999999999999999 589999887775  6999999999


Q ss_pred             cccc
Q 021128          311 IEVL  314 (317)
Q Consensus       311 ~~~~  314 (317)
                      +|..
T Consensus       316 ~p~~  319 (354)
T TIGR02349       316 VPRL  319 (354)
T ss_pred             cCCC
Confidence            9964

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.7e-62  Score=463.20  Aligned_cols=285  Identities=29%  Similarity=0.569  Sum_probs=233.2

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccccccc--CC
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHA--AG  101 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~--~~  101 (317)
                      .+|||++|||+++||.+|||+|||+||++||||++++ ..++++|++|++||++|+|+.+|+.||+||++++....  ++
T Consensus         2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~   80 (372)
T PRK14300          2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGG   80 (372)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCC
Confidence            3799999999999999999999999999999999974 44889999999999999999999999999998775321  11


Q ss_pred             CCCCCCcccChhh----hhhhccCCCCCCcc-cccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc------
Q 021128          102 GGRGGGMGVNIQD----IFSSFFGGGPMEED-EKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------  169 (317)
Q Consensus       102 ~~~~~~~~~~~~d----~F~~~fg~~~~~~~-~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~------  169 (317)
                      +++.++|+.++.+    +|+.|||++..... ..+.++.|+.+.|.|||+|+|+|+++++.+.+. .|..|.|+      
T Consensus        81 ~g~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~  160 (372)
T PRK14300         81 GGNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGE  160 (372)
T ss_pred             CCCCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCC
Confidence            1111222213334    44444443211111 122478999999999999999999999999886 56678774      


Q ss_pred             -----cccCccceEEEEEecCceeEEE------------eeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCC
Q 021128          170 -----RRCNCRNEVYHKQIGPGMFQQM------------TEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGE  232 (317)
Q Consensus       170 -----~~C~g~G~~~~~~~~~g~~~~~------------~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~  232 (317)
                           +.|+|.|.+...   .|++++.            ..++|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|+
T Consensus       161 ~~~~C~~C~G~G~~~~~---~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~  237 (372)
T PRK14300        161 TVTTCDACSGVGATRMQ---QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGE  237 (372)
T ss_pred             CCccCCCccCeEEEEEe---eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEecccc
Confidence                 357777765543   2444422            26789999999999999999999999999999999999999


Q ss_pred             CCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcc
Q 021128          233 PKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRI  311 (317)
Q Consensus       233 ~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~  311 (317)
                      +.+ ++.+|||+|+|+++||+.|+|+|+||++++.|+|.+|++|+++.|+||||+.|.|.++..+++  |+.++|+|+|+
T Consensus       238 ~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~--g~~iri~g~G~  315 (372)
T PRK14300        238 AGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQN--GDQLRLRSKGM  315 (372)
T ss_pred             CCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCC--CcEEEECCCCC
Confidence            875 567899999999999999999999999999999999999999999999999899999988775  79999999999


Q ss_pred             ccc
Q 021128          312 EVL  314 (317)
Q Consensus       312 ~~~  314 (317)
                      |..
T Consensus       316 p~~  318 (372)
T PRK14300        316 SKM  318 (372)
T ss_pred             CCC
Confidence            864

>PRK14283 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.3e-61  Score=460.33  Aligned_cols=286  Identities=34%  Similarity=0.575  Sum_probs=237.8

Q ss_pred             cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC
Q 021128           22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG  101 (317)
Q Consensus        22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~  101 (317)
                      +..+|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||++|+||.+|++||+||+++++.....
T Consensus         2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~   80 (378)
T PRK14283          2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQE   80 (378)
T ss_pred             CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccc
Confidence            457899999999999999999999999999999999985 5589999999999999999999999999999876521100


Q ss_pred             C---C-C-C---CCcccChhhhhhhc-cCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc--
Q 021128          102 G---G-R-G---GGMGVNIQDIFSSF-FGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK--  169 (317)
Q Consensus       102 ~---~-~-~---~~~~~~~~d~F~~~-fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~--  169 (317)
                      +   + + .   ++|+.++.++|+.| ||++.   .....++.|+.+++.|||+|+|+|+++++.+.+. .|..|.|+  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~---~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~  157 (378)
T PRK14283         81 DIFNNINFEDIFQGFGFGIGNIFDMFGFGGGS---RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRA  157 (378)
T ss_pred             ccccccCccccccccccchhhhccccccCCCC---CCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCcccc
Confidence            0   0 0 0   11111345667766 65421   1223578999999999999999999999999875 56678764  


Q ss_pred             ---------cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEE
Q 021128          170 ---------RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVF  227 (317)
Q Consensus       170 ---------~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~  227 (317)
                               +.|+|.|.+.+ .++++|++++..            .++|..|+|.+++.+.++++|.||+|+++|++|+|
T Consensus       158 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l  237 (378)
T PRK14283        158 EPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRV  237 (378)
T ss_pred             CCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEE
Confidence                     45777887654 356677765432            56789999999999999999999999999999999


Q ss_pred             cccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEe
Q 021128          228 YEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAM  306 (317)
Q Consensus       228 ~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~  306 (317)
                      +|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|||.+|++|++++|+|||| .|.|.++..+++  |+.++|
T Consensus       238 ~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g~~~--g~~~ri  314 (378)
T PRK14283        238 SGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAGTQS--GTTFRL  314 (378)
T ss_pred             eccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCCCCC--CCEEEE
Confidence            99999865 46789999999999999999999999999999999999999999999999 589999888775  799999


Q ss_pred             cCCccccc
Q 021128          307 TKKRIEVL  314 (317)
Q Consensus       307 ~~k~~~~~  314 (317)
                      +|+|+|..
T Consensus       315 ~g~G~p~~  322 (378)
T PRK14283        315 KGHGMPSL  322 (378)
T ss_pred             CCCCCCCC
Confidence            99999853

>PRK14292 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2e-60  Score=454.37  Aligned_cols=284  Identities=32%  Similarity=0.493  Sum_probs=238.6

Q ss_pred             CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCCC
Q 021128           25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGR  104 (317)
Q Consensus        25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~~  104 (317)
                      .|||++|||+++||.+|||+|||+||++||||+|++ .+|+++|++|++||++|+||.+|+.||+||+++..+. .++++
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~-~~~~~   79 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGM-PGGDP   79 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccc-cCCcc
Confidence            599999999999999999999999999999999984 4588999999999999999999999999998764211 11111


Q ss_pred             CCCcccChhhhhhhccCCCC-C--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-----------
Q 021128          105 GGGMGVNIQDIFSSFFGGGP-M--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-----------  169 (317)
Q Consensus       105 ~~~~~~~~~d~F~~~fg~~~-~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~-----------  169 (317)
                      .++++++++|+|++|||++. .  ....+..++.|+++.+.|||+|+|+|+++++.+.+. .|..|.|+           
T Consensus        80 ~~~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~  159 (371)
T PRK14292         80 FGGMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKT  159 (371)
T ss_pred             cCccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCcc
Confidence            12223467899999998532 1  111234578999999999999999999999999874 67788764           


Q ss_pred             -cccCccceEEE-EEecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC
Q 021128          170 -RRCNCRNEVYH-KQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI  235 (317)
Q Consensus       170 -~~C~g~G~~~~-~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~  235 (317)
                       +.|+|.|.+.. .+..+|++++..            ...|+.|.|.+++.+.++++|.||+|+.+|++|+|+|+|++.+
T Consensus       160 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~  239 (371)
T PRK14292        160 CPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGP  239 (371)
T ss_pred             CCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCC
Confidence             34777887653 355567765432            6789999999999999999999999999999999999999987


Q ss_pred             CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128          236 DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       236 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      ++. |||||+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+||||+ +.|.++..+++  |+.++|+|+|+|..
T Consensus       240 ~~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~--g~~~~i~g~G~p~~  314 (371)
T PRK14292        240 GGN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGP-QVIEVKPGTQH--GDLHRLRGQGMPRL  314 (371)
T ss_pred             CCC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCC-EEEecCCCcCC--CcEEEECCCCCCCC
Confidence            776 99999999999999999999999999999999999999999999998 47888877765  79999999999864

>PRK14289 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.8e-60  Score=456.65  Aligned_cols=289  Identities=30%  Similarity=0.534  Sum_probs=238.1

Q ss_pred             cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC
Q 021128           22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG  101 (317)
Q Consensus        22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~  101 (317)
                      +...|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||+++++.+...
T Consensus         2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~   81 (386)
T PRK14289          2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGG   81 (386)
T ss_pred             CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCC
Confidence            34689999999999999999999999999999999999877799999999999999999999999999999876532111


Q ss_pred             CCCCCCcccChhhhhhhc---cCC---CC------C--CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCC
Q 021128          102 GGRGGGMGVNIQDIFSSF---FGG---GP------M--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPA  166 (317)
Q Consensus       102 ~~~~~~~~~~~~d~F~~~---fg~---~~------~--~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c  166 (317)
                      ++. ++.+.++.++|++|   |++   +.      .  .......++.|+++.+.|||||+|+|+++++.+.+. .|..|
T Consensus        82 ~~~-~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C  160 (386)
T PRK14289         82 GGF-SGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHC  160 (386)
T ss_pred             CCC-CCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCC
Confidence            110 11012344554333   542   10      0  011223478999999999999999999999999876 57778


Q ss_pred             CCc-----------cccCccceEEEE-EecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCC
Q 021128          167 PGK-----------RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDG  222 (317)
Q Consensus       167 ~g~-----------~~C~g~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G  222 (317)
                      .|+           +.|+|.|.+... +.++|++++..            ...|+.|+|.+++.+.++++|.||+|+++|
T Consensus       161 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G  240 (386)
T PRK14289        161 HGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEG  240 (386)
T ss_pred             CCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCC
Confidence            664           457788876544 56677765422            567999999999999999999999999999


Q ss_pred             CEEEEcccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCC
Q 021128          223 QEVVFYEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFG  301 (317)
Q Consensus       223 ~~i~~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~  301 (317)
                      ++|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+|+||+ +.|.++..+++  |
T Consensus       241 ~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g~~~--g  317 (386)
T PRK14289        241 MQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAGTQP--G  317 (386)
T ss_pred             CEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCccCC--C
Confidence            9999999999875 567899999999999999999999999999999999999999999999997 89999887765  7


Q ss_pred             cEEEecCCccccc
Q 021128          302 TSFAMTKKRIEVL  314 (317)
Q Consensus       302 ~~~~~~~k~~~~~  314 (317)
                      +.++|+|+|+|..
T Consensus       318 ~~~ri~g~G~p~~  330 (386)
T PRK14289        318 KVLRLRNKGLPSV  330 (386)
T ss_pred             cEEEECCCCcCCC
Confidence            9999999999864

>PRK14293 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.7e-60  Score=450.35  Aligned_cols=285  Identities=32%  Similarity=0.559  Sum_probs=238.3

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG  103 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~  103 (317)
                      ..|||+||||+++||.+|||+|||+||++||||+|++. .|+++|++|++||++|+||.+|+.||+||++++.... +.+
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~-~~~   79 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP-GAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAA-GFP   79 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-CHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCC-CcC
Confidence            47999999999999999999999999999999999754 4889999999999999999999999999998765311 101


Q ss_pred             CCCCcccChhhhhhhccCC-CC-C-----CcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc------
Q 021128          104 RGGGMGVNIQDIFSSFFGG-GP-M-----EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK------  169 (317)
Q Consensus       104 ~~~~~~~~~~d~F~~~fg~-~~-~-----~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~------  169 (317)
                      ..+++ .++.|+|++|||+ +. .     .......++.|+.+.+.|||||+|+|+++++.+.+. .|..|.|+      
T Consensus        80 ~~~~~-~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~  158 (374)
T PRK14293         80 DMGDM-GGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGT  158 (374)
T ss_pred             Ccccc-cchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCC
Confidence            11112 1356899999963 11 0     011224578899999999999999999999999885 57778763      


Q ss_pred             -----cccCccceEEEE-EecCceeEEEe------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccC
Q 021128          170 -----RRCNCRNEVYHK-QIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDG  231 (317)
Q Consensus       170 -----~~C~g~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G  231 (317)
                           +.|+|.|.+... ++++|++++..            +++|+.|.|.+++.+.++++|.||||+++|++|+|+|+|
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G  238 (374)
T PRK14293        159 GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEG  238 (374)
T ss_pred             CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCc
Confidence                 457788876544 56778776533            567899999999999999999999999999999999999


Q ss_pred             CCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCc
Q 021128          232 EPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKR  310 (317)
Q Consensus       232 ~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~  310 (317)
                      ++.+ ++.+|||+|+|++++|+.|+|+|+||+++++|||.||++|+++.|+||||+ +.|.++..+++  |+.++|+|+|
T Consensus       239 ~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~~~~--g~~~ri~g~G  315 (374)
T PRK14293        239 DAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAGTQP--NTVLTLENKG  315 (374)
T ss_pred             cCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCCCCC--CCEEEECCCC
Confidence            9865 456799999999999999999999999999999999999999999999997 78888877765  7999999999


Q ss_pred             cccc
Q 021128          311 IEVL  314 (317)
Q Consensus       311 ~~~~  314 (317)
                      +|..
T Consensus       316 ~p~~  319 (374)
T PRK14293        316 VPRL  319 (374)
T ss_pred             CCCC
Confidence            9964

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-60  Score=439.04  Aligned_cols=277  Identities=40%  Similarity=0.709  Sum_probs=241.4

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG  102 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~  102 (317)
                      .+..||+||||+++||.+|||||||+||++||||+|++   +.++|++|++||||||||++|++||+||+++++.+.+  
T Consensus         2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~--   76 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGG--   76 (337)
T ss_pred             cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCC--
Confidence            36789999999999999999999999999999999987   5699999999999999999999999999999854322  


Q ss_pred             CCCCCcccChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc----------cc
Q 021128          103 GRGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------RR  171 (317)
Q Consensus       103 ~~~~~~~~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~----------~~  171 (317)
                        +++++ .    |++||+.+... .+...++.|+.+.+.|||||+|+|.+.++.++++ +|..|.|.          ..
T Consensus        77 --~~g~~-~----f~~~F~~g~~~-~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~  148 (337)
T KOG0712|consen   77 --GGGFG-G----FSQFFGFGGNG-GRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTT  148 (337)
T ss_pred             --CCCCc-c----HHHhccCCCcC-ccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCC
Confidence              22322 1    77787744322 2334459999999999999999999999999887 57778764          34


Q ss_pred             cCccce-EEEEEecCceeEEEe---------------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC
Q 021128          172 CNCRNE-VYHKQIGPGMFQQMT---------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI  235 (317)
Q Consensus       172 C~g~G~-~~~~~~~~g~~~~~~---------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~  235 (317)
                      |.|+|. +...+++||+.++++               ++.|+.|.|.+++.+.+.++|.|++|++++++|++.|++++.+
T Consensus       149 C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~  228 (337)
T KOG0712|consen  149 CRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAP  228 (337)
T ss_pred             CCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecC
Confidence            667665 456799999988765               6799999999999999999999999999999999999999999


Q ss_pred             CCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeC--CcccCCCCcEEEecCCcccc
Q 021128          236 DGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK--VSMNMCFGTSFAMTKKRIEV  313 (317)
Q Consensus       236 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~--~v~~~~~~~~~~~~~k~~~~  313 (317)
                      +..+||+++.|..++|+.|.|.|+||++..+|+|.||++|+.+.+.||||+.+.+.+.  .|+.|  |+..++.|+|+|.
T Consensus       229 g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~--~~~~~v~~~gmp~  306 (337)
T KOG0712|consen  229 GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISP--GDTKRVEGEGMPI  306 (337)
T ss_pred             CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeCh--hHEEeecCCCccc
Confidence            9889999999999999999999999999999999999999999999999999988886  56654  7999999999997


Q ss_pred             c
Q 021128          314 L  314 (317)
Q Consensus       314 ~  314 (317)
                      .
T Consensus       307 ~  307 (337)
T KOG0712|consen  307 F  307 (337)
T ss_pred             c
Confidence            4

>PRK14299 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.6e-55  Score=404.39  Aligned_cols=234  Identities=38%  Similarity=0.592  Sum_probs=198.4

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCC-
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAG-  101 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~-  101 (317)
                      +.+|||+||||+++||.+|||+|||+||++||||+|++ +.++++|++|++||++|+||.+|+.||+||++++..+..+ 
T Consensus         2 ~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~   80 (291)
T PRK14299          2 AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGP   80 (291)
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCC
Confidence            35899999999999999999999999999999999974 4588999999999999999999999999998865421111 


Q ss_pred             --C-CCCCCcc----cChhhhhhhccCCC-C-CCc-------ccccccCCceEEeecccHHHHhcCceeEEEeeeeeecC
Q 021128          102 --G-GRGGGMG----VNIQDIFSSFFGGG-P-MEE-------DEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKP  165 (317)
Q Consensus       102 --~-~~~~~~~----~~~~d~F~~~fg~~-~-~~~-------~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~  165 (317)
                        + ++.++|.    .+++|+|++|||++ . ...       ....+++.|+++.+.|||+|++.|+++++.+.      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~------  154 (291)
T PRK14299         81 PPGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA------  154 (291)
T ss_pred             CCCCCCCCCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC------
Confidence              0 1111111    25778999999852 1 110       12245789999999999999999999888442      


Q ss_pred             CCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCCCCCccEEEE
Q 021128          166 APGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFR  245 (317)
Q Consensus       166 c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~  245 (317)
                                                                .++++|.||||+++|++|+++|+|++.     |||+|+
T Consensus       155 ------------------------------------------g~~~~V~Ip~G~~~G~~ir~~g~G~~~-----GDL~v~  187 (291)
T PRK14299        155 ------------------------------------------GERLSVRIPPGVREGQVIRLAGKGRQG-----GDLYLV  187 (291)
T ss_pred             ------------------------------------------CEEEEEecCCCcCCCcEEEECCCCCCC-----CCEEEE
Confidence                                                      357899999999999999999999973     999999


Q ss_pred             EEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcccc
Q 021128          246 IRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEV  313 (317)
Q Consensus       246 i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~  313 (317)
                      |++++|+.|+|+|+||+++++|||.+|++|++++|+||||+ +.|.++..+++  |+.++|+|+|+|.
T Consensus       188 i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~~~~--g~~~rl~g~G~p~  252 (291)
T PRK14299        188 VRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPRTQA--GRKLRLKGKGWPR  252 (291)
T ss_pred             EEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCCcCC--CCEEEECCCCCCC
Confidence            99999999999999999999999999999999999999997 89999888876  6999999999995

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=100.00  E-value=4.3e-53  Score=394.01  Aligned_cols=252  Identities=28%  Similarity=0.434  Sum_probs=205.4

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccc----ccccc
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG----LKQHA   99 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~----~~~~~   99 (317)
                      .+|||++|||+++||.+|||+|||+||++||||+|++. .++++|++|++||++|+||.+|+.||+||...    +....
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~-~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~   81 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQF   81 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCccccccc
Confidence            47999999999999999999999999999999998754 58999999999999999999999999998642    22110


Q ss_pred             CCCCCCCCc-ccChhhhhhhccCCCCC-CcccccccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccce
Q 021128          100 AGGGRGGGM-GVNIQDIFSSFFGGGPM-EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNE  177 (317)
Q Consensus       100 ~~~~~~~~~-~~~~~d~F~~~fg~~~~-~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~  177 (317)
                      + .++++.+ ..++.++|+.|||++.. ......+++.|+.+++.|||+|++.|+++++.+.+.+|         +|.|.
T Consensus        82 ~-~~~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~~---------~g~G~  151 (306)
T PRK10266         82 Q-HGDGQSFNAEDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVY---------NAFGM  151 (306)
T ss_pred             c-cCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEecccc---------cCCCe
Confidence            1 0111111 12678999999985221 11123457899999999999999999999998765443         22221


Q ss_pred             EEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeE
Q 021128          178 VYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRR  256 (317)
Q Consensus       178 ~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R  256 (317)
                                ++               ....++++|.||+|+++|++|+++|+|++.++ +.+|||+|+|+++||+.|+|
T Consensus       152 ----------~~---------------~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r  206 (306)
T PRK10266        152 ----------IE---------------QEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDI  206 (306)
T ss_pred             ----------EE---------------EeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEE
Confidence                      10               11246799999999999999999999998764 56799999999999999999


Q ss_pred             eCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128          257 EGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       257 ~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      +|+||+++++|||.+|++|++++|+|+||+ +.|.++..+++  |+.++|+|+|+|..
T Consensus       207 ~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g~~~--g~~~ri~g~G~p~~  261 (306)
T PRK10266        207 VGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPGSQA--GQRLRVKGKGLVSK  261 (306)
T ss_pred             eCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCCcCC--CCEEEECCCCCCCC
Confidence            999999999999999999999999999998 88999877764  79999999999863

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.9e-50  Score=363.24  Aligned_cols=292  Identities=51%  Similarity=0.835  Sum_probs=251.6

Q ss_pred             HHHhhhccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128           15 LCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG   94 (317)
Q Consensus        15 ~~~~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~   94 (317)
                      +.....+.+++|||+||||+++||..|||+|||+||++||||+|++++.|.+.|++|+.||||||||++|+.||+||+++
T Consensus         6 ~~~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEeg   85 (336)
T KOG0713|consen    6 LSGAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEG   85 (336)
T ss_pred             hhhhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhh
Confidence            34445567789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCcccChhhhhhhccCC-----CCCCcccccccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCc
Q 021128           95 LKQHAAGGGRGGGMGVNIQDIFSSFFGG-----GPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGK  169 (317)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~F~~~fg~-----~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~  169 (317)
                      ++.....+.++++    -.++|+.||+.     ++....+...+|.++...++.+++++|.|...+..+.+.+...|+|+
T Consensus        86 L~~~~~~~~~g~~----~~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~  161 (336)
T KOG0713|consen   86 LKDENKDGEGGGG----GNDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGT  161 (336)
T ss_pred             hcccccccccCCc----ccchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcc
Confidence            9864311111111    14566666542     12223344678999999999999999999988888888889999999


Q ss_pred             cccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEe
Q 021128          170 RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTA  249 (317)
Q Consensus       170 ~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~  249 (317)
                      ..|+|+-..+.++.++|.++..+...|..|.+.+...++..+++.+..|...|....+..+|.+...+.+||+++.+..-
T Consensus       162 ~~~~~~~~~~~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y  241 (336)
T KOG0713|consen  162 RKCNCRLEMFTQQEGPGRFQMLQEAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSY  241 (336)
T ss_pred             cccCChhhheeeccCCChhhhhhhhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcceecccCCceeeeEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             CCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccc
Q 021128          250 PHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIE  312 (317)
Q Consensus       250 ~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~  312 (317)
                      +|+.|.|.++|+++++.+++.+++.|+..++.++|+..+.++...+.-|+  -.++..+-|+|
T Consensus       242 ~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~--~~~~~~~~~~~  302 (336)
T KOG0713|consen  242 THPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPG--ARTRKKGEGMP  302 (336)
T ss_pred             cccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccc--hhhhhhhccch
Confidence            99999999999999999999999999999999999998888877666552  33444444444

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=100.00  E-value=5.8e-42  Score=338.03  Aligned_cols=141  Identities=12%  Similarity=0.137  Sum_probs=126.5

Q ss_pred             CceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEE
Q 021128          135 DDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVD  214 (317)
Q Consensus       135 ~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~  214 (317)
                      -++.+.+.|+|+++|+|+++++.+.|.+|+                                  |.|...+.+.++++|.
T Consensus       657 ~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----------------------------------g~G~ktvkE~ktLeVk  702 (871)
T TIGR03835       657 VNLVYEEEVPQILFFNNQIKEIKYTRHTVD----------------------------------GNTESTTNEAITLEIQ  702 (871)
T ss_pred             cceEEecccCHHHHhCCCeEEEEEEEeecc----------------------------------CCCcceeeeeEEEEEe
Confidence            478999999999999999999999887752                                  1222345567899999


Q ss_pred             ecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCC
Q 021128          215 IEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKV  294 (317)
Q Consensus       215 Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~  294 (317)
                      ||+|+++|++|+|+|+|++++++. |||+|+|+++||+.|+|+|+|||+++.|+|.+||+|+++.|+||||+ +.|+++.
T Consensus       703 IPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTLDGr-VkLkIPp  780 (871)
T TIGR03835       703 LPITSQLNISAIFKGFGHDFGNGC-GDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPNKL-FNVRIPG  780 (871)
T ss_pred             cCCCCCCCCEEEeccccCCCCCCC-CCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCCCCC-EEEeeCC
Confidence            999999999999999999977664 99999999999999999999999999999999999999999999998 8999998


Q ss_pred             cccCCCCcEEEecCCcccc
Q 021128          295 SMNMCFGTSFAMTKKRIEV  313 (317)
Q Consensus       295 v~~~~~~~~~~~~~k~~~~  313 (317)
                      .+++  |+.++|+|+|+|.
T Consensus       781 gTqp--GqvLRIkGKGMP~  797 (871)
T TIGR03835       781 GIKV--NDQVIFKDLGLTK  797 (871)
T ss_pred             CCCC--CcEEEECCCCCCC
Confidence            8875  7999999999984

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-37  Score=282.78  Aligned_cols=226  Identities=33%  Similarity=0.519  Sum_probs=185.6

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG  103 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~  103 (317)
                      ..|||+||||+++|+..|||+||++||++||||.|.++ +|+++|++|.+|||+|+|+++|+.||++|..+  ..     
T Consensus        42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~--~~-----  113 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ--HG-----  113 (288)
T ss_pred             CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc--cc-----
Confidence            44999999999999999999999999999999999987 59999999999999999999999999999875  10     


Q ss_pred             CCCCcccChhhhhhhccCCCCCCcccccccCCceEEeecccHHHHhcCceeEEEeee-eeecCCCCc-----------cc
Q 021128          104 RGGGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREK-NVIKPAPGK-----------RR  171 (317)
Q Consensus       104 ~~~~~~~~~~d~F~~~fg~~~~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r-~v~~~c~g~-----------~~  171 (317)
                      +.++   ++.++|..+|++.    ..+...+.+.++.+.++|++|..|+.+.+.+.. ..|..|.+.           ..
T Consensus       114 ~~~g---~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~  186 (288)
T KOG0715|consen  114 EFGG---NPFDVFLEFFGGK----MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKT  186 (288)
T ss_pred             cccC---CccchHHHhhccc----ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchh
Confidence            1111   6788999999761    223345678889999999999999987777765 467777654           45


Q ss_pred             cCccceEEEEEecC---------ceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCCCCCccE
Q 021128          172 CNCRNEVYHKQIGP---------GMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDL  242 (317)
Q Consensus       172 C~g~G~~~~~~~~~---------g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL  242 (317)
                      |.|.|.+......+         .+......+.|..|.|.+.+...+.+.|.+|+|+.++.+|++.+.|..       ||
T Consensus       187 ~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~-------~l  259 (288)
T KOG0715|consen  187 CSGRGLVSNPKEDPFILYTCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND-------DL  259 (288)
T ss_pred             hhCcccccccccCCcceeecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-------eE
Confidence            77777443322111         112223355699999999999999999999999999999999998875       99


Q ss_pred             EEEEEEeCCCCeeEeCCcEEEEEecCHHH
Q 021128          243 KFRIRTAPHDRFRREGNNLHTTVTVTLVQ  271 (317)
Q Consensus       243 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~e  271 (317)
                      +|.+.|.+++.|+|+|.|+++++.|++.|
T Consensus       260 ~v~~~v~~~~~~~r~~~~i~~~~~i~~~~  288 (288)
T KOG0715|consen  260 FVRLIVAKSPSFRREGKDILYDAIISFTQ  288 (288)
T ss_pred             EEEEEeccCcccccccCcccccccccccC
Confidence            99999999999999999999999999754

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.1e-25  Score=207.19  Aligned_cols=255  Identities=34%  Similarity=0.538  Sum_probs=194.5

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG  102 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~  102 (317)
                      ..|||++|+|.++|+.+||++||+++|++||||+|+.+ ..|+++|++|++||++|+|+.+|..||+||++++.+.....
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~   81 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS   81 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence            57999999999999999999999999999999998877 23666899999999999999999999999997665421100


Q ss_pred             C-CCCC---c-ccChhhhhhhccCCCCC-C-----------------------------c-----------ccccccCCc
Q 021128          103 G-RGGG---M-GVNIQDIFSSFFGGGPM-E-----------------------------E-----------DEKIVKGDD  136 (317)
Q Consensus       103 ~-~~~~---~-~~~~~d~F~~~fg~~~~-~-----------------------------~-----------~~~~~kg~d  136 (317)
                      + ...+   + ..+..+.|.+|||.... .                             .           .....+...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (306)
T KOG0714|consen   82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPP  161 (306)
T ss_pred             CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCC
Confidence            1 0111   1 12446667777762110 0                             0           001111223


Q ss_pred             eEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEec
Q 021128          137 VIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIE  216 (317)
Q Consensus       137 i~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip  216 (317)
                      +...+.+++++.+.|+.....+.+.......                              ..    .........+.++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~----~~~~~~~~~~~~~  207 (306)
T KOG0714|consen  162 VEHPLRVSLEDLYKGESKKMKISRQSFTSNG------------------------------RE----GSSRSRYLSISIK  207 (306)
T ss_pred             ccCCcceeHHHhccccceeeecccccccCCc------------------------------cc----ccCccceeEEecc
Confidence            4444555777888887776665543221110                              00    1235677899999


Q ss_pred             CCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcEEEE--EecCHHHHhcCCEEEEecCCCCeEEEeeC-
Q 021128          217 KGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTT--VTVTLVQALVGFEKTIEHLDEHLVDISTK-  293 (317)
Q Consensus       217 ~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~--~~Isl~eAllG~~~~v~tldG~~i~i~~~-  293 (317)
                      +++..|+.+..+.+|+..++..+-++++.+..++|+.|.|.+.||...  ..|++.+|++|....+++++|..+.+... 
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (306)
T KOG0714|consen  208 PGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLDGRSYSLSINK  287 (306)
T ss_pred             CCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeecccCccccCcccc
Confidence            999999999999999988888899999999999999999999999999  99999999999999999999999999988 


Q ss_pred             CcccCCCCcEEEecCCccccc
Q 021128          294 VSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       294 ~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      .++.+  +....+++.|+|+.
T Consensus       288 ~~~~~--~~~~~~~~~~~~~~  306 (306)
T KOG0714|consen  288 DLIEP--GEEDVIPGEGLPCP  306 (306)
T ss_pred             cccCC--CceeeecCCCCCCC
Confidence            77765  68999999999863

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=4.6e-20  Score=162.63  Aligned_cols=192  Identities=31%  Similarity=0.450  Sum_probs=132.2

Q ss_pred             cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH-HHHHHHHHHHhHhhhCCccccccccccC-cccccccc
Q 021128           22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEE-ANKRFAEINNAYEVLSDSETRNIYDTYG-EEGLKQHA   99 (317)
Q Consensus        22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~-~~~~f~~i~~Ay~~L~d~~~r~~YD~~G-~~~~~~~~   99 (317)
                      ....+||+||||+++|+..||++|||++|++||||+++.++. +.++|+.|++||++|+|+.+|+.||+++ ........
T Consensus         3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~~~~~~~~~~   82 (237)
T COG2214           3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIGADNYFPGKS   82 (237)
T ss_pred             hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhcccccCcccc
Confidence            346799999999999999999999999999999999998875 8999999999999999999999999974 33222111


Q ss_pred             CCCCCC-CCcc-cChhhhhhhccCCCCC----C------------------------cccccccCC-ceEEeecccHHHH
Q 021128          100 AGGGRG-GGMG-VNIQDIFSSFFGGGPM----E------------------------EDEKIVKGD-DVIVELDATLEDL  148 (317)
Q Consensus       100 ~~~~~~-~~~~-~~~~d~F~~~fg~~~~----~------------------------~~~~~~kg~-di~~~l~vtlee~  148 (317)
                      ...... .... ..+.+++..+++....    .                        .......+. +....+.+++.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (237)
T COG2214          83 YRESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLLSRGLSGLAAALSLFADEAALRSGSLRRRDLAANLADNFEEA  162 (237)
T ss_pred             ccccccccccccccHHHHHHhhcccccccccccchhhhcccccccccccccccccccccccccccccceeeeeeccHHHH
Confidence            000000 0000 1233444443332110    0                        000000001 3444455555555


Q ss_pred             hcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEc
Q 021128          149 YMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFY  228 (317)
Q Consensus       149 ~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~  228 (317)
                      +.+....+.+.                                               ......+.+|.|+..+..+++.
T Consensus       163 ~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~  195 (237)
T COG2214         163 LAGVKKAVARL-----------------------------------------------LGKALKSTIKAGALEGKALRLK  195 (237)
T ss_pred             hcCcceeeecc-----------------------------------------------ccccccccCCcccccCceeeec
Confidence            55544433221                                               1223338999999999999999


Q ss_pred             ccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcE
Q 021128          229 EDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNL  261 (317)
Q Consensus       229 g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL  261 (317)
                      +++.... +..++.+..+..++|+.|..+++++
T Consensus       196 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  227 (237)
T COG2214         196 GLLKSAR-GALGKARLKELSKRHPPFALEGDDK  227 (237)
T ss_pred             ccCCcCC-CCcccceeeeeccCCCCccccCCcc
Confidence            9998877 7789999999999999999999999

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=2.7e-21  Score=171.33  Aligned_cols=74  Identities=58%  Similarity=0.970  Sum_probs=70.5

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ   97 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   97 (317)
                      ..|+|+|||++++|+.++||||||+||++||||++++++++.++|++||+||++|+||.+|..||.||+.++.-
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l  103 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL  103 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence            56799999999999999999999999999999999998889999999999999999999999999999987754

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1e-20  Score=172.94  Aligned_cols=90  Identities=44%  Similarity=0.786  Sum_probs=79.9

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG  103 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~  103 (317)
                      ..|||++|||+.+|+.+||++|||+.|++||||+||+++.|.++|+++.+||+||+|+.+|+.||++|..+....     
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~-----   78 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ-----   78 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----
Confidence            789999999999999999999999999999999999999999999999999999999999999999998765322     


Q ss_pred             CCCCcccChhhhhhhccCC
Q 021128          104 RGGGMGVNIQDIFSSFFGG  122 (317)
Q Consensus       104 ~~~~~~~~~~d~F~~~fg~  122 (317)
                         ++ .+..++|.+.|++
T Consensus        79 ---~~-~d~~~~~r~~f~~   93 (296)
T KOG0691|consen   79 ---GR-EDQADGFRKKFGS   93 (296)
T ss_pred             ---hh-hhHHHHHHHHhhh
Confidence               11 2667778777764

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.80  E-value=3.5e-20  Score=188.03  Aligned_cols=76  Identities=36%  Similarity=0.672  Sum_probs=70.4

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ   97 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   97 (317)
                      ....++||++|||+++||.+|||+|||+||++||||+++++ .|.++|++|++||+|||||.+|+.||+||..+++.
T Consensus       569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~  644 (1136)
T PTZ00341        569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG  644 (1136)
T ss_pred             cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence            34578999999999999999999999999999999999876 48899999999999999999999999999987653

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=7.5e-20  Score=172.14  Aligned_cols=74  Identities=49%  Similarity=0.900  Sum_probs=69.2

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHhHhhhCCccccccccccCccccc
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE---EANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK   96 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~   96 (317)
                      .+.|||.+|+|+++||.+||++|||++++.||||+..++.   .|++.|+.|.+||||||||.+|++||.||++|++
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            3569999999999999999999999999999999987553   4899999999999999999999999999999987

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=5.4e-19  Score=166.34  Aligned_cols=77  Identities=52%  Similarity=0.813  Sum_probs=69.7

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ   97 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   97 (317)
                      ....+.||++|||.++|+..|||++||+||++||||+||+. ++|.++|+.|+.||+|||||..|+.||..-++-|..
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~   81 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRG   81 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcC
Confidence            34568899999999999999999999999999999998865 469999999999999999999999999988766653

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.75  E-value=7.8e-19  Score=126.06  Aligned_cols=63  Identities=60%  Similarity=1.016  Sum_probs=59.9

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHhHhhhCCcccccccc
Q 021128           26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE-EANKRFAEINNAYEVLSDSETRNIYD   88 (317)
Q Consensus        26 ~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~f~~i~~Ay~~L~d~~~r~~YD   88 (317)
                      |||+||||+++|+.++||+||+++++++|||+++.+. .+.+.|+.|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999987655 68899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.74  E-value=2.4e-18  Score=157.45  Aligned_cols=80  Identities=45%  Similarity=0.729  Sum_probs=70.5

Q ss_pred             hccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHhHhhhCCccccccccccCccccc
Q 021128           20 NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE---EANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK   96 (317)
Q Consensus        20 ~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~   96 (317)
                      ..+..+|||.||||.++|+..||.||||++|.+||||...+.+   .|+++|-.|..|-|||+||++|++||. |++.++
T Consensus       389 kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD  467 (504)
T KOG0624|consen  389 KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD  467 (504)
T ss_pred             HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence            3455799999999999999999999999999999999988765   389999999999999999999999996 666666


Q ss_pred             cccC
Q 021128           97 QHAA  100 (317)
Q Consensus        97 ~~~~  100 (317)
                      ...+
T Consensus       468 ~Es~  471 (504)
T KOG0624|consen  468 PESQ  471 (504)
T ss_pred             hhhc
Confidence            4433

>PHA03102 Small T antigen; Reviewed

Probab=99.73  E-value=3.9e-18  Score=141.99  Aligned_cols=85  Identities=22%  Similarity=0.371  Sum_probs=72.2

Q ss_pred             CccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCC
Q 021128           25 KSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGG  102 (317)
Q Consensus        25 ~~~Y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~  102 (317)
                      +.+|++|||+++|  |.+|||+|||++|+++|||++++    .++|++|++||++|+|+.+|..||.+|.+.....    
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~----   76 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE----   76 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCcccccc----
Confidence            4689999999999  99999999999999999999864    3699999999999999999999999998754321    


Q ss_pred             CCCCCcccChhhhhhhccCCC
Q 021128          103 GRGGGMGVNIQDIFSSFFGGG  123 (317)
Q Consensus       103 ~~~~~~~~~~~d~F~~~fg~~  123 (317)
                         ..   .+.++|...||+.
T Consensus        77 ---~~---~~~~~f~~~fg~~   91 (153)
T PHA03102         77 ---ED---VPSGYVGATFGDR   91 (153)
T ss_pred             ---cc---cHHHHhhhhcCCc
Confidence               11   3677888888764

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=2.7e-18  Score=148.86  Aligned_cols=70  Identities=49%  Similarity=0.841  Sum_probs=65.2

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHhHhhhCCccccccccccCcc
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQ--GNEEANKRFAEINNAYEVLSDSETRNIYDTYGEE   93 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~--~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~   93 (317)
                      .+|+|+||||.++|+..+|++||++||+++|||+++  +..+|.++|+.++.||.||+|.++|+.||+.|.-
T Consensus        13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i   84 (264)
T KOG0719|consen   13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI   84 (264)
T ss_pred             ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence            459999999999999999999999999999999994  4457999999999999999999999999998864

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.9e-17  Score=142.41  Aligned_cols=73  Identities=38%  Similarity=0.708  Sum_probs=67.4

Q ss_pred             cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128           22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG   94 (317)
Q Consensus        22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~   94 (317)
                      ....|+|+||||+++||.+|||||||+|++++|||++++..+.++.|..|++||+.|+|+..|..|..||+.-
T Consensus        96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD  168 (230)
T KOG0721|consen   96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD  168 (230)
T ss_pred             hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence            3467999999999999999999999999999999999876667889999999999999999999999999753

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.68  E-value=1e-16  Score=113.39  Aligned_cols=59  Identities=69%  Similarity=1.095  Sum_probs=54.5

Q ss_pred             CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhHhhhCCccc
Q 021128           25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG-NEEANKRFAEINNAYEVLSDSET   83 (317)
Q Consensus        25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~-~~~~~~~f~~i~~Ay~~L~d~~~   83 (317)
                      +|||++|||+++++.++||+||+++++.+|||++++ .+.+.+.|++|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            489999999999999999999999999999999986 45588999999999999999853

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.65  E-value=3.2e-16  Score=108.76  Aligned_cols=55  Identities=69%  Similarity=1.113  Sum_probs=51.7

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCC
Q 021128           26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD   80 (317)
Q Consensus        26 ~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d   80 (317)
                      |||++|||+++++.++||++|+++++++|||+++....+.+.|++|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999999998745588999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=6.6e-16  Score=135.51  Aligned_cols=85  Identities=39%  Similarity=0.629  Sum_probs=70.3

Q ss_pred             hhhHHHHHHHHHHHhhhcc-----CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhh
Q 021128            4 RRARLLFLLCALCYALNVI-----AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVL   78 (317)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-----~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L   78 (317)
                      ++..|.++.++.+......     ...|.|+||||+++|+.+||.+|||+||+++|||++++.+ +.+.|..|.+|||+|
T Consensus         7 ~rw~Lvl~~Llp~l~vgl~egLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e-~k~~F~~iAtayeil   85 (329)
T KOG0722|consen    7 ERWCLVLILLLPSLFVGLSEGLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE-SKKLFVKIATAYEIL   85 (329)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch-hhhhhhhhhcccccc
Confidence            5555554444443333222     3579999999999999999999999999999999998766 679999999999999


Q ss_pred             CCccccccccc
Q 021128           79 SDSETRNIYDT   89 (317)
Q Consensus        79 ~d~~~r~~YD~   89 (317)
                      .|.+.|..||-
T Consensus        86 kd~e~rt~ydy   96 (329)
T KOG0722|consen   86 KDNETRTQYDY   96 (329)
T ss_pred             cchhhHHhHHH
Confidence            99999999995

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.4e-15  Score=142.11  Aligned_cols=97  Identities=44%  Similarity=0.780  Sum_probs=78.9

Q ss_pred             HHhhhccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128           16 CYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEG   94 (317)
Q Consensus        16 ~~~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~   94 (317)
                      ......++.+|||.|||++++||..|||+|||++|+.+|||++..+ .+++.+|+++-+||.+|+||.+|..||. |.. 
T Consensus       364 ~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds-g~d-  441 (486)
T KOG0550|consen  364 QLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS-GQD-  441 (486)
T ss_pred             HHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc-ccc-
Confidence            3445567789999999999999999999999999999999999887 6799999999999999999999999996 211 


Q ss_pred             cccccCCCCCCCCcccChhhhhhhc
Q 021128           95 LKQHAAGGGRGGGMGVNIQDIFSSF  119 (317)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~F~~~  119 (317)
                      +..  .+ +++++  ++|.++|..|
T Consensus       442 le~--~~-~~~a~--~dp~~~~~a~  461 (486)
T KOG0550|consen  442 LEE--VG-SGGAG--FDPFNIFRAF  461 (486)
T ss_pred             hhh--hc-CCCcC--cChhhhhhhc
Confidence            111  11 11233  4888888877

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.49  E-value=3.5e-14  Score=121.46  Aligned_cols=65  Identities=26%  Similarity=0.461  Sum_probs=57.7

Q ss_pred             CccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHhHhhhCCccccccccc
Q 021128           25 KSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDT   89 (317)
Q Consensus        25 ~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~-----~~~~~f~~i~~Ay~~L~d~~~r~~YD~   89 (317)
                      .|||++|||++.  ++.++|+++||++++++|||+.....     .+.+.|+.||+||++|+||.+|+.|+-
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            489999999996  78899999999999999999976542     256789999999999999999999984

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.48  E-value=4.4e-14  Score=120.13  Aligned_cols=65  Identities=31%  Similarity=0.538  Sum_probs=57.5

Q ss_pred             CccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH---HHHHHHHHHHhHhhhCCccccccccc
Q 021128           25 KSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEE---ANKRFAEINNAYEVLSDSETRNIYDT   89 (317)
Q Consensus        25 ~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~~---~~~~f~~i~~Ay~~L~d~~~r~~YD~   89 (317)
                      .|||++|||++.  ++.++|+++||++++++|||++.+..+   +...+..||+||++|+||.+|+.|+.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL   71 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML   71 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            589999999996  789999999999999999999875432   33568899999999999999999984

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.44  E-value=1.3e-13  Score=117.87  Aligned_cols=68  Identities=26%  Similarity=0.414  Sum_probs=60.3

Q ss_pred             cCCCccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHhHhhhCCccccccccc
Q 021128           22 IAGKSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEE-----ANKRFAEINNAYEVLSDSETRNIYDT   89 (317)
Q Consensus        22 ~~~~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~r~~YD~   89 (317)
                      ++..|||++|||++.  .+..+|+++||++++++|||++...+.     +.+.|..||+||++|+||.+|+.|+-
T Consensus         1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            457899999999997  668999999999999999999865432     56789999999999999999999994

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.44  E-value=1.3e-13  Score=118.21  Aligned_cols=67  Identities=22%  Similarity=0.388  Sum_probs=58.1

Q ss_pred             CCCccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHH-----HHHHHHHHHhHhhhCCccccccccc
Q 021128           23 AGKSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEEA-----NKRFAEINNAYEVLSDSETRNIYDT   89 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~~~-----~~~f~~i~~Ay~~L~d~~~r~~YD~   89 (317)
                      ...|||++|||++.  ++..+|+++||++++++|||+++....+     .+.++.||+||++|+||.+|+.|+.
T Consensus         4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            35899999999995  6899999999999999999998754433     3446899999999999999999994

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.40  E-value=3.1e-13  Score=107.06  Aligned_cols=55  Identities=27%  Similarity=0.466  Sum_probs=48.4

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhC
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLS   79 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~   79 (317)
                      .+...++|++|||+++||.+|||+|||+|++++|||++++    .+.|++|++||++|.
T Consensus        61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~  115 (116)
T PTZ00100         61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL  115 (116)
T ss_pred             CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence            3345789999999999999999999999999999999643    368899999999995

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=6.6e-13  Score=125.63  Aligned_cols=68  Identities=37%  Similarity=0.560  Sum_probs=63.5

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDT   89 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~   89 (317)
                      .....|.|.+|||++++|.++|||.||++|..-|||||..+ .|++.|+.++.|||+|+|+.+|+.||.
T Consensus       231 e~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~-~A~Eafk~Lq~Afevig~~~kR~eYd~  298 (490)
T KOG0720|consen  231 ELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP-RAEEAFKKLQVAFEVIGDSVKRKEYDL  298 (490)
T ss_pred             hhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh-hHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence            33478999999999999999999999999999999999954 499999999999999999999999996

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.31  E-value=1.7e-12  Score=118.68  Aligned_cols=58  Identities=41%  Similarity=0.596  Sum_probs=51.5

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----hHHHHHHHHHHHhHhhhCCc
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG---N----EEANKRFAEINNAYEVLSDS   81 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~---~----~~~~~~f~~i~~Ay~~L~d~   81 (317)
                      -.++|++|||+++||.+|||+|||+|+++||||++.+   +    +.|+++|++|++||++|+..
T Consensus       199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999999999643   1    34889999999999999853

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.29  E-value=2.9e-12  Score=120.75  Aligned_cols=73  Identities=34%  Similarity=0.651  Sum_probs=66.3

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHHHHhHhhhCCccccccccccCccccc
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG-----NEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK   96 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~-----~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~   96 (317)
                      .-|+|+|||++.++|..+||++||+|+.|+|||+-++     ..+.++.+.+|++||+.|+|+..|..|-.||.-...
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p  174 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP  174 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence            5799999999999999999999999999999999765     235789999999999999999999999999975443

>PHA02624 large T antigen; Provisional

Probab=99.29  E-value=3.4e-12  Score=126.43  Aligned_cols=61  Identities=23%  Similarity=0.453  Sum_probs=56.4

Q ss_pred             CCccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcccccccc
Q 021128           24 GKSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYD   88 (317)
Q Consensus        24 ~~~~Y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD   88 (317)
                      .+++|++|||+++|  +.+|||+|||++|++||||++++    +++|++|++||++|+|+.+|..|+
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~~   72 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQS   72 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhcc
Confidence            46899999999999  99999999999999999999753    479999999999999999999993

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=99.23  E-value=1.5e-11  Score=92.45  Aligned_cols=54  Identities=24%  Similarity=0.329  Sum_probs=46.0

Q ss_pred             cEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcccccc
Q 021128          260 NLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVLK  315 (317)
Q Consensus       260 DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~~  315 (317)
                      |||++++||++||++|++++|+||||+.+.|+++..+++  |+.++|+|+|+|...
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~--g~~~~i~g~G~p~~~   54 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQP--GQQLRIKGKGMPKPK   54 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-ST--T-EEEETTESEEESS
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCC--CcEEeecCCCCCcCC
Confidence            899999999999999999999999999999999999986  799999999998753

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.01  E-value=5.2e-10  Score=107.17  Aligned_cols=86  Identities=23%  Similarity=0.327  Sum_probs=73.9

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|||+||+.|+++.|...                                               ....+
T Consensus       273 r~G~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dG~~i  305 (369)
T PRK14282        273 RSGSDLIYDVTIDYLQAILGTTVEVPLP-----------------------------------------------EGGTT  305 (369)
T ss_pred             EecCCEEEEEEeCHHHHhCCCEEEEeCC-----------------------------------------------CCcEE
Confidence            4588999999999999999998887421                                               23468


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCC-CCCCccEEEEEEEeCCCCeeEeCCcEEEE
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKI-DGEPGDLKFRIRTAPHDRFRREGNNLHTT  264 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDL~v~i~v~~h~~F~R~G~DL~~~  264 (317)
                      +|.||+|+.+|++|+|+|+|.+.. ++.+|||||++.+..|+.|.+++.+|+.+
T Consensus       306 ~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~  359 (369)
T PRK14282        306 MLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE  359 (369)
T ss_pred             EEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999998864 34579999999999999999999887654

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.98  E-value=6.8e-10  Score=94.97  Aligned_cols=65  Identities=22%  Similarity=0.345  Sum_probs=56.8

Q ss_pred             CccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHhHhhhCCccccccccc
Q 021128           25 KSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEE-----ANKRFAEINNAYEVLSDSETRNIYDT   89 (317)
Q Consensus        25 ~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~r~~YD~   89 (317)
                      .|||++||+++.  .+..+++++|++|.+++|||+......     +.+.-..||+||.+|+||-+|+.|=-
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            699999999996  899999999999999999999755432     45567889999999999999999863

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.95  E-value=8.7e-10  Score=93.08  Aligned_cols=53  Identities=28%  Similarity=0.453  Sum_probs=46.2

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHhHhhhCCccccccccc
Q 021128           37 ASDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDT   89 (317)
Q Consensus        37 as~~eIk~ayr~la~~~hPd~~~~~~-----~~~~~f~~i~~Ay~~L~d~~~r~~YD~   89 (317)
                      .+..+|+++||++++++|||+.+...     .+...|+.||+||++|+||.+|+.|+-
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL   60 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML   60 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            46789999999999999999864431     267889999999999999999999995

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=98.89  E-value=4e-09  Score=79.16  Aligned_cols=72  Identities=24%  Similarity=0.467  Sum_probs=54.9

Q ss_pred             ceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEe
Q 021128          136 DVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDI  215 (317)
Q Consensus       136 di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~I  215 (317)
                      |++.++.|+|.||+.|+++++..-                                               ..+.++|.|
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l-----------------------------------------------~g~~~~i~i   33 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTL-----------------------------------------------DGKTIKIKI   33 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-T-----------------------------------------------TS-EEEEEE
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECC-----------------------------------------------CCCEEEEec
Confidence            688999999999999999888421                                               346799999


Q ss_pred             cCCCCCCCEEEEcccCCCCCCC--CCccEEEEEEEeCCCCe
Q 021128          216 EKGMQDGQEVVFYEDGEPKIDG--EPGDLKFRIRTAPHDRF  254 (317)
Q Consensus       216 p~G~~~G~~i~~~g~G~~~~~~--~~GDL~v~i~v~~h~~F  254 (317)
                      |+|+++|+.++++|+|.....+  ..|||+|++++.-...+
T Consensus        34 p~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~l   74 (81)
T PF01556_consen   34 PPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKL   74 (81)
T ss_dssp             TST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SST
T ss_pred             cCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCC
Confidence            9999999999999999964433  68999999999855433

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.7e-09  Score=92.28  Aligned_cols=66  Identities=38%  Similarity=0.601  Sum_probs=59.5

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCcccccccc
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYD   88 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD   88 (317)
                      -+-|+|+||.|.+..+.++||+.||+|++..|||+|+++ +.|.+.|.-+..||..|-|+.-|..-+
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            467899999999999999999999999999999999998 569999999999999999998554433

>PRK14290 chaperone protein DnaJ; Provisional

Probab=98.88  E-value=2.8e-09  Score=102.02  Aligned_cols=86  Identities=22%  Similarity=0.349  Sum_probs=74.2

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +.|.|+++.+.|||.||+.|+++.|...                                                ...+
T Consensus       267 R~G~DL~~~~~Isl~eAl~G~~~~I~~~------------------------------------------------~g~i  298 (365)
T PRK14290        267 RINDDLYVDQKINFPQAALGGEIEIKLF------------------------------------------------REKY  298 (365)
T ss_pred             EecCCEEEEEEeCHHHHhCCCEEEEEcC------------------------------------------------CceE
Confidence            4588999999999999999999887421                                                2358


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCCC-CCccEEEEEEEeCCCCeeEeCCcEEEEE
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKIDG-EPGDLKFRIRTAPHDRFRREGNNLHTTV  265 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~GDL~v~i~v~~h~~F~R~G~DL~~~~  265 (317)
                      +|.||+|+++|++|+++|+|...+++ .+|||||+|+|..++.|++++.+|+.++
T Consensus       299 ~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~  353 (365)
T PRK14290        299 NLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF  353 (365)
T ss_pred             EEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999999986654 5799999999999999999998887653

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=3.8e-09  Score=94.02  Aligned_cols=74  Identities=34%  Similarity=0.476  Sum_probs=63.1

Q ss_pred             hhhccCCCccchhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHhHhhhCCccccccccccC
Q 021128           18 ALNVIAGKSYYEVLQVPR---GASDEQIKRAYRKLALKYHPDKNQ--GNEEANKRFAEINNAYEVLSDSETRNIYDTYG   91 (317)
Q Consensus        18 ~~~~~~~~~~Y~iLgv~~---~as~~eIk~ayr~la~~~hPd~~~--~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G   91 (317)
                      -..-+...|+|.+|||++   -|+..+|.+|+++-..+||||+..  ++....+.|+.|+.||++|+|+.+|.+||..-
T Consensus        36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d  114 (379)
T COG5269          36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND  114 (379)
T ss_pred             hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence            345667789999999998   588999999999999999999972  22235689999999999999999999999744

>PRK14285 chaperone protein DnaJ; Provisional

Probab=98.84  E-value=4.6e-09  Score=100.51  Aligned_cols=84  Identities=18%  Similarity=0.355  Sum_probs=71.3

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +++.|++..+.|||.||+.|.++.|..-                                               ....+
T Consensus       263 R~G~dL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG~~v  295 (365)
T PRK14285        263 RNGKDLYATLPISFTQAALGKEIKIQTI-----------------------------------------------ASKKI  295 (365)
T ss_pred             EeccceEEEEecCHHHHhCCCEEEEECC-----------------------------------------------CCCEE
Confidence            4588999999999999999998887431                                               23468


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCCCC-CccEEEEEEEeCCCCeeEeCCcEE
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKIDGE-PGDLKFRIRTAPHDRFRREGNNLH  262 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~-~GDL~v~i~v~~h~~F~R~G~DL~  262 (317)
                      +|.||+|+.+|++|+|+|+|.+.++.. .|||||+|++..|+.|.+++..|+
T Consensus       296 ~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l  347 (365)
T PRK14285        296 KIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLL  347 (365)
T ss_pred             EEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999999866543 599999999999999888776544

>PRK14294 chaperone protein DnaJ; Provisional

Probab=98.81  E-value=6e-09  Score=99.80  Aligned_cols=86  Identities=24%  Similarity=0.373  Sum_probs=72.3

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|||.||+.|.++.|..-                                               .. .+
T Consensus       261 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG-~~  292 (366)
T PRK14294        261 RDGNDVHCKVPISFVQAALGAQIEVPTL-----------------------------------------------EG-ER  292 (366)
T ss_pred             ecCCCEEEEEEeCHHHHhCCCeEEEECC-----------------------------------------------CC-cE
Confidence            4689999999999999999998877421                                               12 35


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEE
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTV  265 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~  265 (317)
                      +|.||+|+.+|++|+|+|+|.+.++ ..+|||||+|+|..|+.|.++..+|+..+
T Consensus       293 ~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~  347 (366)
T PRK14294        293 ELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEF  347 (366)
T ss_pred             EEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            8999999999999999999998654 35799999999999999998887776543

>PRK14299 chaperone protein DnaJ; Provisional

Probab=98.74  E-value=1.4e-08  Score=94.39  Aligned_cols=83  Identities=25%  Similarity=0.339  Sum_probs=69.7

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|||.+|+.|+++.|..-                                               .. .+
T Consensus       198 R~G~DL~~~~~Isl~eAl~G~~~~v~tl-----------------------------------------------dG-~~  229 (291)
T PRK14299        198 LEGDDLYATVDVPAPIAVVGGKVRVMTL-----------------------------------------------DG-PV  229 (291)
T ss_pred             EECCEEEEEEecCHHHHhCCCEEEEECC-----------------------------------------------CC-CE
Confidence            4588999999999999999998877421                                               12 47


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcEE
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLH  262 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~  262 (317)
                      +|.||+|+.+|++++++|+|.+..++..|||+|+++|..++.+..+..+++
T Consensus       230 ~v~ip~~~~~g~~~rl~g~G~p~~~~~~GDL~v~~~V~~P~~l~~~~~~~l  280 (291)
T PRK14299        230 EVTIPPRTQAGRKLRLKGKGWPRGPAGRGDQYAEVRITIPTRPTPEEERLY  280 (291)
T ss_pred             EEEeCCCcCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            899999999999999999998754456799999999999998887766553

>PRK14284 chaperone protein DnaJ; Provisional

Probab=98.74  E-value=1.7e-08  Score=97.56  Aligned_cols=85  Identities=25%  Similarity=0.340  Sum_probs=69.9

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +++.|+++.+.|||+||+.|++++|..-                                              .+...+
T Consensus       275 R~G~DL~~~~~Isl~eAl~G~~~~v~tl----------------------------------------------d~g~~i  308 (391)
T PRK14284        275 RRGDDLILELPIGFVDAALGMKKEIPTL----------------------------------------------LKEGTC  308 (391)
T ss_pred             eecCCEEEEEEecHHHHhCCCeEEEeec----------------------------------------------CCCcEE
Confidence            4588999999999999999998888421                                              113468


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEE
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLH  262 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~  262 (317)
                      +|+||+|+.+|++++|+|+|....+ ..+|||||+|+|..++.+..+...|+
T Consensus       309 ~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll  360 (391)
T PRK14284        309 RLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELL  360 (391)
T ss_pred             EEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence            9999999999999999999998654 45799999999999987766655443

>PRK10767 chaperone protein DnaJ; Provisional

Probab=98.72  E-value=1.8e-08  Score=96.67  Aligned_cols=86  Identities=21%  Similarity=0.361  Sum_probs=72.9

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +.|.|++..+.|+|.||+.|+++.|..-                                               .. .+
T Consensus       259 R~G~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dG-~i  290 (371)
T PRK10767        259 RDGNDLYCEVPISFTTAALGGEIEVPTL-----------------------------------------------DG-RV  290 (371)
T ss_pred             EecCCEEEEEEeCHHHHhCCCeEEEecC-----------------------------------------------CC-cE
Confidence            4588999999999999999998877321                                               12 58


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEE
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTV  265 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~  265 (317)
                      +|.||+|+.+|++++++|+|...++ +..|||||+++|..++.|.+++.+|+.++
T Consensus       291 ~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l  345 (371)
T PRK10767        291 KLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF  345 (371)
T ss_pred             EEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            9999999999999999999987653 45799999999999999999988876654

>PRK14300 chaperone protein DnaJ; Provisional

Probab=98.71  E-value=5.7e-08  Score=93.25  Aligned_cols=77  Identities=23%  Similarity=0.360  Sum_probs=65.6

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|+|.+|+.|.++.|...                                               ....+
T Consensus       262 R~G~Dl~~~~~Isl~~Al~G~~~~i~~l-----------------------------------------------dg~~i  294 (372)
T PRK14300        262 VDGANLHCKLPISFVNAALGGEIEVPVI-----------------------------------------------EGGKV  294 (372)
T ss_pred             EecCCEEEEEecCHHHHhCCCEEEEecC-----------------------------------------------CCCEE
Confidence            4588999999999999999998888431                                               23469


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCee
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFR  255 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~  255 (317)
                      +|.||+|+++|++|+++|+|.+.++ ..+|||||+++|..+..+.
T Consensus       295 ~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls  339 (372)
T PRK14300        295 NLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLS  339 (372)
T ss_pred             EEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCC
Confidence            9999999999999999999998654 4579999999999987644

>PRK14298 chaperone protein DnaJ; Provisional

Probab=98.70  E-value=2.1e-08  Score=96.40  Aligned_cols=86  Identities=21%  Similarity=0.340  Sum_probs=72.3

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|+|.||+.|+++.|..-                                               ..+ +
T Consensus       262 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG~-i  293 (377)
T PRK14298        262 RVGDDIISEIPISFTQAALGADIMVPTL-----------------------------------------------YGK-V  293 (377)
T ss_pred             EEcCcEEEEEEeCHHHHhCCCeEEEecC-----------------------------------------------CCC-E
Confidence            4588999999999999999998877321                                               122 7


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEEEEE
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLHTTV  265 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~~~~  265 (317)
                      +|.||+|+.+|++++++|+|....+ +..|||||+++|..++.+.+++.+|+.++
T Consensus       294 ~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l  348 (377)
T PRK14298        294 KMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF  348 (377)
T ss_pred             EEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            8999999999999999999987554 35799999999999999999888776554

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=98.66  E-value=3.8e-08  Score=93.91  Aligned_cols=82  Identities=24%  Similarity=0.478  Sum_probs=68.4

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +++.|++..+.|||+||+.|+++.|..-                                               .. .+
T Consensus       264 r~g~DL~~~~~isl~eAl~G~~~~i~~l-----------------------------------------------dG-~i  295 (354)
T TIGR02349       264 RDGNDLYIEVPISFTQAILGGEIEVPTL-----------------------------------------------DG-DV  295 (354)
T ss_pred             EecCCEEEEEEeCHHHHhCCCeEEEecC-----------------------------------------------Cc-eE
Confidence            4588999999999999999998777321                                               12 58


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCCC-CCccEEEEEEEeCCCCeeEeCCcE
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKIDG-EPGDLKFRIRTAPHDRFRREGNNL  261 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~GDL~v~i~v~~h~~F~R~G~DL  261 (317)
                      +|.||+|+.+|++++++|+|...+++ .+|||||+++|..++.+.++..++
T Consensus       296 ~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~  346 (354)
T TIGR02349       296 KLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKEL  346 (354)
T ss_pred             EEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence            99999999999999999999986544 579999999999998877665443

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=98.66  E-value=1e-07  Score=92.02  Aligned_cols=75  Identities=28%  Similarity=0.411  Sum_probs=63.7

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|||.||+.|.++.|..-                                                ...+
T Consensus       290 R~G~DL~~~~~Isl~eAl~G~~~~v~~l------------------------------------------------dg~i  321 (392)
T PRK14279        290 RDGDDLTVTVPVSFTELALGSTLSVPTL------------------------------------------------DGPV  321 (392)
T ss_pred             eecCcEEEEEEccHHHHcCCceEEEEcC------------------------------------------------CceE
Confidence            4588999999999999999998777321                                                2237


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCe
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRF  254 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F  254 (317)
                      +|+||+|+++|++|+++|+|.+..++..|||||+++|.-++..
T Consensus       322 ~v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~~v~~P~~L  364 (392)
T PRK14279        322 GVKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTVKVAVPPNL  364 (392)
T ss_pred             EEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCC
Confidence            8999999999999999999998766678999999999977643

>PRK14295 chaperone protein DnaJ; Provisional

Probab=98.64  E-value=9.6e-08  Score=92.16  Aligned_cols=75  Identities=25%  Similarity=0.379  Sum_probs=63.8

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++++.|||.||+.|++++|..-                                               ..+.+
T Consensus       283 R~G~DL~~~~~Isl~eAl~G~~~~I~tl-----------------------------------------------dG~~~  315 (389)
T PRK14295        283 RSGDNLTVTVPVTFPEAALGAEVRVPTL-----------------------------------------------GGPPV  315 (389)
T ss_pred             EecCCEEEEEeecHHHHhCCCeEEEECC-----------------------------------------------CCCEE
Confidence            4588999999999999999998877321                                               23468


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCC
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDR  253 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~  253 (317)
                      +|.||+|+++|++|+|+|+|.+..++..|||||++.|.-.+.
T Consensus       316 ~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~~  357 (389)
T PRK14295        316 TVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKD  357 (389)
T ss_pred             EEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCCC
Confidence            999999999999999999999866666899999999996654

>PRK14301 chaperone protein DnaJ; Provisional

Probab=98.64  E-value=4.8e-08  Score=93.79  Aligned_cols=82  Identities=23%  Similarity=0.414  Sum_probs=67.3

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|+|.||+.|.++.|..-                                               .. .+
T Consensus       261 r~G~DL~~~~~Isl~eAl~G~~~~v~tl-----------------------------------------------dG-~i  292 (373)
T PRK14301        261 RQGQDLVVTQEISFVQAALGDRIEVPTL-----------------------------------------------DD-PV  292 (373)
T ss_pred             eecCcEEEEEEecHHHHhCCCeEEEecC-----------------------------------------------Cc-cE
Confidence            4589999999999999999998877321                                               12 28


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcE
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNL  261 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL  261 (317)
                      +|.||+|+++|++++|+|+|.+.++ +..|||||+++|..++.+..+..++
T Consensus       293 ~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~  343 (373)
T PRK14301        293 TLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEEL  343 (373)
T ss_pred             EEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence            8999999999999999999998654 3479999999999998766554333

>PRK14287 chaperone protein DnaJ; Provisional

Probab=98.63  E-value=4.3e-08  Score=94.05  Aligned_cols=83  Identities=23%  Similarity=0.414  Sum_probs=68.6

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|++..+.|||.||+.|+++.|..-                                               .. .+
T Consensus       259 R~G~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dg-~i  290 (371)
T PRK14287        259 RDGDDIYCEMPLTFPQVALGDEIEVPTL-----------------------------------------------NG-KV  290 (371)
T ss_pred             EecCCeEEEEeccHHHHhCCCEEEEEcC-----------------------------------------------CC-CE
Confidence            4689999999999999999998877421                                               12 37


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCCcEE
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGNNLH  262 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL~  262 (317)
                      +|.||+|+.+|++++|+|+|....+ +..|||||+|+|..++.+.++...|+
T Consensus       291 ~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll  342 (371)
T PRK14287        291 KLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELM  342 (371)
T ss_pred             EEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence            8999999999999999999997554 45799999999999988876654443

>PRK14288 chaperone protein DnaJ; Provisional

Probab=98.61  E-value=1.6e-07  Score=90.14  Aligned_cols=80  Identities=19%  Similarity=0.303  Sum_probs=66.7

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|||.||+.|+++.|..-                                               ....+
T Consensus       255 R~G~DL~~~~~Isl~eAllG~~i~v~tL-----------------------------------------------dG~~l  287 (369)
T PRK14288        255 REGCDLFIEAPVFFTTIALGHTIKVPSL-----------------------------------------------KGDEL  287 (369)
T ss_pred             EeCCEEEEEEecCHHHHhcCCEEEeecC-----------------------------------------------CCCEE
Confidence            4589999999999999999998877321                                               23458


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCCC-CCccEEEEEEEeCCCCeeEeC
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKIDG-EPGDLKFRIRTAPHDRFRREG  258 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~GDL~v~i~v~~h~~F~R~G  258 (317)
                      +|.||+|+++|++++++|+|.+.++. ..|||||+++|.-++.+..+.
T Consensus       288 ~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q  335 (369)
T PRK14288        288 ELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQ  335 (369)
T ss_pred             EEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHH
Confidence            99999999999999999999986654 359999999999998765443

>PRK14291 chaperone protein DnaJ; Provisional

Probab=98.61  E-value=1.4e-07  Score=90.83  Aligned_cols=74  Identities=23%  Similarity=0.424  Sum_probs=62.5

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +.+.|+++.+.|||+||+.|+++.|..-                                               ....+
T Consensus       272 r~G~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dG~~l  304 (382)
T PRK14291        272 RRGDNLYLDVNITVAEAVLGTELEVPLL-----------------------------------------------DGKKE  304 (382)
T ss_pred             eecCCeEEEEEeeHHHHhCCCEEEEecC-----------------------------------------------CCCEE
Confidence            4588999999999999999999888431                                               23468


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCC
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHD  252 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~  252 (317)
                      +|.||+|+++|++|+|+|+|...++ ..+|||||+++|.-..
T Consensus       305 ~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~  346 (382)
T PRK14291        305 KVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK  346 (382)
T ss_pred             EEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence            9999999999999999999998654 3579999999998654

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=98.57  E-value=2.3e-07  Score=86.81  Aligned_cols=75  Identities=17%  Similarity=0.178  Sum_probs=63.5

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +.|.|+++++.|||.+|+.|+++.|...                                                ...+
T Consensus       206 r~g~DL~~~~~Isl~~al~G~~~~i~~~------------------------------------------------~g~v  237 (306)
T PRK10266        206 IVGQDLEIVVPLAPWEAALGAKVTVPTL------------------------------------------------KESI  237 (306)
T ss_pred             EeCCceEEEEecCHHHHhCCCEEEeeCC------------------------------------------------CccE
Confidence            3588999999999999999999888421                                                1237


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCee
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFR  255 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~  255 (317)
                      +|+||+|+.+|++++++|+|...++ ..|||+|+++|..++.+.
T Consensus       238 ~v~ip~g~~~g~~~ri~g~G~p~~~-~~GdL~v~~~v~~P~~l~  280 (306)
T PRK10266        238 LLTIPPGSQAGQRLRVKGKGLVSKK-QTGDLYAVLKIVMPPKPD  280 (306)
T ss_pred             EEEeCCCcCCCCEEEECCCCCCCCC-CCCCEEEEEEEECCCCCC
Confidence            9999999999999999999987554 479999999999997653

>PRK14293 chaperone protein DnaJ; Provisional

Probab=98.56  E-value=8e-08  Score=92.34  Aligned_cols=86  Identities=20%  Similarity=0.341  Sum_probs=71.5

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +++.|+..+++|||.||+.|.++.|...                                               .. .+
T Consensus       264 r~g~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dG-~~  295 (374)
T PRK14293        264 RDGINILSEIKISYLQAILGDTLEVDTV-----------------------------------------------DG-PV  295 (374)
T ss_pred             hhhhceEEEeccCHHHHhCCCEEEecCC-----------------------------------------------CC-CE
Confidence            4578999999999999999998887421                                               12 26


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCCC--CCccEEEEEEEeCCCCeeEeCCcEEEEE
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKIDG--EPGDLKFRIRTAPHDRFRREGNNLHTTV  265 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~--~~GDL~v~i~v~~h~~F~R~G~DL~~~~  265 (317)
                      +|.||+|+.+|++++++|+|...+++  ..|||||+++|..++.+.+++.+|+-++
T Consensus       296 ~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l  351 (374)
T PRK14293        296 ELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL  351 (374)
T ss_pred             EEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999999876543  4799999999999998888887766543

>PRK14276 chaperone protein DnaJ; Provisional

Probab=98.51  E-value=3.8e-07  Score=87.80  Aligned_cols=75  Identities=21%  Similarity=0.390  Sum_probs=62.9

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|||.||+.|.+++|...                                               .. .+
T Consensus       267 R~G~DL~~~~~Isl~eAl~G~~~~v~tl-----------------------------------------------dg-~i  298 (380)
T PRK14276        267 RDGSTIYYTLPISFVQAALGDTVEVPTV-----------------------------------------------HG-DV  298 (380)
T ss_pred             eecceEEEEEecCHHHHhCCCeEEEEcC-----------------------------------------------CC-cE
Confidence            4588999999999999999998887421                                               12 37


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCe
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRF  254 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F  254 (317)
                      +|.||+|+++|++++++|+|.+.++ ..+|||||+|+|.-.+.+
T Consensus       299 ~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l  342 (380)
T PRK14276        299 ELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKL  342 (380)
T ss_pred             EEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCC
Confidence            8999999999999999999998654 457999999999977643

>PRK14286 chaperone protein DnaJ; Provisional

Probab=98.49  E-value=2e-07  Score=89.45  Aligned_cols=80  Identities=20%  Similarity=0.333  Sum_probs=65.4

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|+|.||+.|+++.|..-                                               ....+
T Consensus       267 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG~~i  299 (372)
T PRK14286        267 RQGNDLILVRKISLAQAILGAEIEVPTI-----------------------------------------------DGKKA  299 (372)
T ss_pred             EecCCEEEEEEECHHHHhCCCEEEEeCC-----------------------------------------------CCCEE
Confidence            4588999999999999999998877321                                               23468


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeC
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREG  258 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G  258 (317)
                      +|+||+|+++|++++++|+|....+ ...|||||+|+|.-++.+..+.
T Consensus       300 ~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~q  347 (372)
T PRK14286        300 KMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQ  347 (372)
T ss_pred             EEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHH
Confidence            9999999999999999999987554 3469999999999776544433

>PRK14292 chaperone protein DnaJ; Provisional

Probab=98.46  E-value=5.3e-07  Score=86.59  Aligned_cols=80  Identities=20%  Similarity=0.343  Sum_probs=65.5

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +.+.|+...+.|+|.||+.|+++.|..-                                               ... .
T Consensus       259 r~g~dL~~~~~isl~eAl~G~~~~i~tl-----------------------------------------------dG~-~  290 (371)
T PRK14292        259 REQEHLIYEARIGFAKAALGGQITVPTL-----------------------------------------------DGP-Q  290 (371)
T ss_pred             cchhceeEEeccCHHHHhCCCeEEEECC-----------------------------------------------CCC-E
Confidence            4588999999999999999998888421                                               112 3


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEeCC
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGN  259 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~G~  259 (317)
                      +|.||+|+.+|++++|+|+|...++ ..+|||||++.|..++.+..+-.
T Consensus       291 ~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~  339 (371)
T PRK14292        291 VIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAR  339 (371)
T ss_pred             EEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH
Confidence            6999999999999999999998654 45799999999999987665443

>PRK14278 chaperone protein DnaJ; Provisional

Probab=98.45  E-value=6.9e-07  Score=85.98  Aligned_cols=76  Identities=22%  Similarity=0.341  Sum_probs=62.8

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|+|.||+.|+++.|..-                                               ....+
T Consensus       260 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------d~~~i  292 (378)
T PRK14278        260 RDGDDLHCTVSVPMVDAALGTTVTVEAI-----------------------------------------------LDGPS  292 (378)
T ss_pred             EcCCCEEEEEecCHHHHhcCCeEEEecC-----------------------------------------------CCCeE
Confidence            4588999999999999999998877321                                               13468


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCe
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRF  254 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F  254 (317)
                      +|.||+|+++|++++++|+|.+..+ +..|||||+++|.-...+
T Consensus       293 ~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~L  336 (378)
T PRK14278        293 EITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRL  336 (378)
T ss_pred             EEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCC
Confidence            9999999999999999999997643 457999999999866543

>PRK14281 chaperone protein DnaJ; Provisional

Probab=98.45  E-value=6e-07  Score=86.91  Aligned_cols=74  Identities=26%  Similarity=0.338  Sum_probs=61.7

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|||.||+.|.++.|..-                                               .. .+
T Consensus       283 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dg-~i  314 (397)
T PRK14281        283 RNGDDVIYNLAVSYPDLVLGTKVEVPTL-----------------------------------------------DG-AV  314 (397)
T ss_pred             EecCCEEEEEEecHHHHhcCCeEEeecC-----------------------------------------------Cc-cE
Confidence            4588999999999999999998877421                                               12 37


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCC
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDR  253 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~  253 (317)
                      +|.||+|+++|++++|+|+|.+..+ +..|||||+++|.-.+.
T Consensus       315 ~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~  357 (397)
T PRK14281        315 KLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKE  357 (397)
T ss_pred             EEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCC
Confidence            8999999999999999999987544 35799999999986654

>PRK14280 chaperone protein DnaJ; Provisional

Probab=98.44  E-value=9e-07  Score=85.12  Aligned_cols=75  Identities=24%  Similarity=0.392  Sum_probs=62.3

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|||.||+.|+++.|..-                                               .. .+
T Consensus       264 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dg-~i  295 (376)
T PRK14280        264 RDGDDIYCEMPLTFAQAALGDEIEVPTL-----------------------------------------------HG-KV  295 (376)
T ss_pred             EecCCEEEEEecCHHHHhCCCEEEEecC-----------------------------------------------Cc-eE
Confidence            4589999999999999999998877321                                               12 37


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCe
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRF  254 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F  254 (317)
                      +|.||+|+.+|++++|+|+|....+ ...|||||+++|...+.+
T Consensus       296 ~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~L  339 (376)
T PRK14280        296 KLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKL  339 (376)
T ss_pred             EEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCC
Confidence            8999999999999999999987543 357999999999977543

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1.7e-07  Score=81.87  Aligned_cols=76  Identities=24%  Similarity=0.436  Sum_probs=57.9

Q ss_pred             hhhHHHHHHHHHH----Hhh-hccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHh-h
Q 021128            4 RRARLLFLLCALC----YAL-NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYE-V   77 (317)
Q Consensus         4 ~~~~~~~~~~~~~----~~~-~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~-~   77 (317)
                      ||..||-++.+.-    .+. +-..-..||.+|||...|+.+|++.||..||+++|||...+.. ..+.|.+|.+||. |
T Consensus        21 ~rvkmlpyfgiirnrll~~~kske~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a-daa~f~qideafrkv   99 (342)
T KOG0568|consen   21 NRVKMLPYFGIIRNRLLHLHKSKEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA-DAARFIQIDEAFRKV   99 (342)
T ss_pred             chhcccchhhhHHHHHHHHhhhHHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc-cHHHHHHHHHHHHHH
Confidence            5555655555322    111 1222357999999999999999999999999999999987655 5688999999998 7


Q ss_pred             hCC
Q 021128           78 LSD   80 (317)
Q Consensus        78 L~d   80 (317)
                      |+.
T Consensus       100 lq~  102 (342)
T KOG0568|consen  100 LQE  102 (342)
T ss_pred             HHH
Confidence            763

>PRK14297 chaperone protein DnaJ; Provisional

Probab=98.41  E-value=8.4e-07  Score=85.48  Aligned_cols=75  Identities=19%  Similarity=0.324  Sum_probs=61.9

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++.+.|||.||+.|+++.|...                                               .. .+
T Consensus       269 R~G~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dg-~~  300 (380)
T PRK14297        269 RKGFDIYIDKHISFAKAALGTEIKVPTV-----------------------------------------------DG-EV  300 (380)
T ss_pred             EeCCCEEEEEEeCHHHHhCCCcEEEEcC-----------------------------------------------CC-cE
Confidence            4588999999999999999998877421                                               12 37


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCe
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRF  254 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F  254 (317)
                      +|.||+|+.+|++++++|+|....+ +..|||||+|+|.=.+.+
T Consensus       301 ~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l  344 (380)
T PRK14297        301 KYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKL  344 (380)
T ss_pred             EEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCC
Confidence            8999999999999999999987544 357999999999966543

>PRK14289 chaperone protein DnaJ; Provisional

Probab=98.35  E-value=1.5e-06  Score=83.94  Aligned_cols=73  Identities=25%  Similarity=0.377  Sum_probs=61.1

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +.+.|+++.+.|+|.||+.|+++.|...                                               .. .+
T Consensus       275 r~g~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------dg-~i  306 (386)
T PRK14289        275 RDENDLIYNLLLSVPTAALGGAVEVPTI-----------------------------------------------DG-KA  306 (386)
T ss_pred             ccccceeEEeccCHHHHhCCCeEEeecC-----------------------------------------------Cc-eE
Confidence            4578999999999999999998888431                                               12 37


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCC
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHD  252 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~  252 (317)
                      +|.||+|+++|++++++|+|...++ +..|||||+|+|.=..
T Consensus       307 ~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~  348 (386)
T PRK14289        307 KVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPE  348 (386)
T ss_pred             EEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCC
Confidence            9999999999999999999998654 4579999999998554

>PRK14283 chaperone protein DnaJ; Provisional

Probab=98.34  E-value=2e-06  Score=82.84  Aligned_cols=74  Identities=19%  Similarity=0.346  Sum_probs=61.0

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +.|.|++..+.|+|+||+.|.++.|..-                                               .. .+
T Consensus       267 r~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG-~i  298 (378)
T PRK14283        267 REGANLYYEKPISFVQAALGDTVDVPTI-----------------------------------------------DG-PV  298 (378)
T ss_pred             EecCCEEEEEecCHHHHhcCCeEEEEcC-----------------------------------------------Cc-eE
Confidence            4588999999999999999998877421                                               12 58


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCC
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDR  253 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~  253 (317)
                      +|.||+|+.+|++++|+|+|....+ ...|||||++++.-.+.
T Consensus       299 ~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~  341 (378)
T PRK14283        299 ELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKK  341 (378)
T ss_pred             EEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCC
Confidence            8999999999999999999987543 35799999999985543

>PRK14277 chaperone protein DnaJ; Provisional

Probab=98.32  E-value=2.1e-06  Score=82.85  Aligned_cols=74  Identities=23%  Similarity=0.402  Sum_probs=60.7

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +.|.|+++.+.|||.||+.|+++.|..-                                               ... +
T Consensus       276 R~G~DL~~~~~Isl~eAl~G~~~~i~tl-----------------------------------------------dG~-~  307 (386)
T PRK14277        276 REGYNVYLEMPITFTDAALGGEIEIPTL-----------------------------------------------DGK-V  307 (386)
T ss_pred             EecCCEEEEEEcCHHHHhCCCEEEEEcC-----------------------------------------------CCC-E
Confidence            4588999999999999999998877321                                               223 7


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCC
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDR  253 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~  253 (317)
                      +|.||+|+.+|++++++|+|....+ ...|||||+++|.=.+.
T Consensus       308 ~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~  350 (386)
T PRK14277        308 KFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKK  350 (386)
T ss_pred             EEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCC
Confidence            8999999999999999999987543 34699999999985543

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=98.30  E-value=2.1e-06  Score=83.59  Aligned_cols=73  Identities=18%  Similarity=0.260  Sum_probs=61.0

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +.|.|+++++.|||.||+.|.++.|..-                                               ....+
T Consensus       271 R~G~DL~~~~~Isl~eAllG~~i~I~tL-----------------------------------------------dG~~l  303 (421)
T PTZ00037        271 REGGDLFITKKISLYEALTGFVFYITHL-----------------------------------------------DGRKL  303 (421)
T ss_pred             EeCCeEEEEEeCCHHHHhcCCEEEeeCC-----------------------------------------------CCCeE
Confidence            4589999999999999999998777321                                               23458


Q ss_pred             EEEecCC--CCCCCEEEEcccCCCCCC--CCCccEEEEEEEeCC
Q 021128          212 TVDIEKG--MQDGQEVVFYEDGEPKID--GEPGDLKFRIRTAPH  251 (317)
Q Consensus       212 ~V~Ip~G--~~~G~~i~~~g~G~~~~~--~~~GDL~v~i~v~~h  251 (317)
                      +|+||+|  +++|++++|+|+|.+..+  +..|||||++.|.-.
T Consensus       304 ~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P  347 (421)
T PTZ00037        304 LVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFP  347 (421)
T ss_pred             EEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcC
Confidence            8999999  999999999999987543  356999999999865

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=2.8e-06  Score=80.33  Aligned_cols=78  Identities=28%  Similarity=0.509  Sum_probs=64.4

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +.+.|+..+++|+|.+|+.|.++.|..-                                               ... +
T Consensus       261 R~g~dL~~~~~Is~~~AalG~~i~vptl-----------------------------------------------~g~-~  292 (371)
T COG0484         261 RDGDDLYCEVPISFTEAALGGEIEVPTL-----------------------------------------------DGR-V  292 (371)
T ss_pred             ECCCceEeccccCHHHHhcCCEEEEEec-----------------------------------------------CCC-E
Confidence            4578999999999999999988887421                                               122 9


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCCCeeEe
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRRE  257 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~~F~R~  257 (317)
                      +|.||+|+..|++++|+|+|..... ...|||||.|.|.-.+.+...
T Consensus       293 ~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~  339 (371)
T COG0484         293 KLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDE  339 (371)
T ss_pred             EEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHH
Confidence            9999999999999999999998644 446999999999987764433

>PRK14296 chaperone protein DnaJ; Provisional

Probab=98.28  E-value=2.6e-06  Score=81.79  Aligned_cols=73  Identities=14%  Similarity=0.334  Sum_probs=60.1

Q ss_pred             CCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEE
Q 021128          134 GDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTV  213 (317)
Q Consensus       134 g~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V  213 (317)
                      |.|++++++|||.||+.|.++.|..-                                               ... ++|
T Consensus       273 G~DL~~~~~Isl~eAllG~~~~i~tl-----------------------------------------------dG~-~~v  304 (372)
T PRK14296        273 NNDILMTYNISYLDAILGNEIIIKTL-----------------------------------------------DGD-IKY  304 (372)
T ss_pred             CCcEEEEEecCHHHHhCCCEEEeeCC-----------------------------------------------CCC-EEE
Confidence            68999999999999999998877421                                               233 789


Q ss_pred             EecCCCCCCCEEEEcccCCCCC--CCCCccEEEEEEEeCCCCe
Q 021128          214 DIEKGMQDGQEVVFYEDGEPKI--DGEPGDLKFRIRTAPHDRF  254 (317)
Q Consensus       214 ~Ip~G~~~G~~i~~~g~G~~~~--~~~~GDL~v~i~v~~h~~F  254 (317)
                      .||+|+++|++++|+|+|.+..  .+..|||||+++|.-.+..
T Consensus       305 ~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~L  347 (372)
T PRK14296        305 KLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNL  347 (372)
T ss_pred             EECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCC
Confidence            9999999999999999998632  2356999999999966543

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=7.2e-07  Score=92.05  Aligned_cols=57  Identities=40%  Similarity=0.602  Sum_probs=47.4

Q ss_pred             hccCCCccchhcCCCCC---C-CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhC
Q 021128           20 NVIAGKSYYEVLQVPRG---A-SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLS   79 (317)
Q Consensus        20 ~~~~~~~~Y~iLgv~~~---a-s~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~   79 (317)
                      .+++..+-|+||.|+-+   . ..+.||++|++||.+|||||||.-   .++|..+++|||.|+
T Consensus      1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEG---RemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEG---REMFERVNKAYELLS 1336 (2235)
T ss_pred             CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHHHHHH
Confidence            34455678999999863   2 347899999999999999999754   489999999999998

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=1.6e-06  Score=66.87  Aligned_cols=55  Identities=27%  Similarity=0.401  Sum_probs=46.4

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcc
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE   82 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~   82 (317)
                      .+.--.||||+++++.+.||+|+|++....|||+..++--|    ..||||+++|....
T Consensus        55 r~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlA----sKINEAKdlLe~~~  109 (112)
T KOG0723|consen   55 RREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLA----SKINEAKDLLEGTS  109 (112)
T ss_pred             hHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHH----HHHHHHHHHHhccc
Confidence            34455699999999999999999999999999999876433    45999999997543

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=98.21  E-value=4.1e-06  Score=84.96  Aligned_cols=71  Identities=51%  Similarity=0.910  Sum_probs=66.2

Q ss_pred             CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccc
Q 021128           25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK   96 (317)
Q Consensus        25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~   96 (317)
                      +|||++|||+++|+.++||+|||+||++||||++++ ..+.++|++|++||++|+||.+|+.||+||..+..
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d   72 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD   72 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence            699999999999999999999999999999999986 45889999999999999999999999999986543

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=97.17  E-value=0.00042  Score=59.86  Aligned_cols=47  Identities=19%  Similarity=0.367  Sum_probs=39.6

Q ss_pred             cccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEc
Q 021128          170 RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFY  228 (317)
Q Consensus       170 ~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~  228 (317)
                      +.|+|+|.++..           .++|+.|+|.|.+..++...+.+ .|+.+|++|++.
T Consensus       103 ~~C~G~G~~i~~-----------~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~  149 (186)
T TIGR02642       103 PRCRGTGLIQRR-----------QRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK  149 (186)
T ss_pred             CCCCCeeEEecC-----------CCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence            357788876532           25799999999999999999999 999999999874

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.0004  Score=57.48  Aligned_cols=68  Identities=24%  Similarity=0.471  Sum_probs=53.9

Q ss_pred             ccCCCccchhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHhHhhhCCcccccccc
Q 021128           21 VIAGKSYYEVLQVPR--GASDEQIKRAYRKLALKYHPDKNQGN-----EEANKRFAEINNAYEVLSDSETRNIYD   88 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~--~as~~eIk~ayr~la~~~hPd~~~~~-----~~~~~~f~~i~~Ay~~L~d~~~r~~YD   88 (317)
                      +...++||.++|...  ...+..+..-|.-..+++|||+....     ..|.+...++++||..|.||-+|+.|=
T Consensus         4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi   78 (168)
T KOG3192|consen    4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL   78 (168)
T ss_pred             cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            345678999997554  45566666689999999999994322     247888999999999999999999986

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.0026  Score=54.65  Aligned_cols=55  Identities=38%  Similarity=0.578  Sum_probs=47.4

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhHhhh
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-------EEANKRFAEINNAYEVL   78 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-------~~~~~~f~~i~~Ay~~L   78 (317)
                      ..+.|.+|++...++..+|+++|+++....|||+-...       ..+.+++++|++||+.+
T Consensus       112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            37899999999999999999999999999999984321       24789999999999854

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.015  Score=54.72  Aligned_cols=46  Identities=17%  Similarity=0.347  Sum_probs=39.6

Q ss_pred             eCEEEEEEecCC--CCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCC
Q 021128          207 EGYFVTVDIEKG--MQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHD  252 (317)
Q Consensus       207 ~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~  252 (317)
                      +...+++.++||  +.+|++++++|+|....+...|||||.+.|+=.+
T Consensus       277 dGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~lyi~~~v~fp~  324 (337)
T KOG0712|consen  277 DGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLYIKFEVKFPK  324 (337)
T ss_pred             CCceEEEecCCCceeChhHEEeecCCCcccccCCCCcEEEEEEEEcCC
Confidence            356789999999  9999999999999986655599999999998665

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.43  E-value=0.0064  Score=52.21  Aligned_cols=64  Identities=33%  Similarity=0.480  Sum_probs=48.9

Q ss_pred             ccchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHhHhhhCCccccccccc
Q 021128           26 SYYEVLQVPRGAS--DEQIKRAYRKLALKYHPDKNQGNEE-----ANKRFAEINNAYEVLSDSETRNIYDT   89 (317)
Q Consensus        26 ~~Y~iLgv~~~as--~~eIk~ayr~la~~~hPd~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~r~~YD~   89 (317)
                      +|....+..+.+.  .+.++..|+.+++.+|||+......     +.+.+..++.||.+|.||-+|+.|=.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l   72 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL   72 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            3444555555443  3458899999999999999865542     34678899999999999999998863

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=95.43  E-value=0.023  Score=40.62  Aligned_cols=36  Identities=28%  Similarity=0.463  Sum_probs=23.6

Q ss_pred             cccCccceEEEEEecCceeEEEeeeccccCCCceEEe
Q 021128          170 RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYER  206 (317)
Q Consensus       170 ~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~  206 (317)
                      +.|+|.|.+...+..++++.+ ....|+.|+|.|.+.
T Consensus        19 ~~C~G~G~~~~~~~~~~~~~~-~~~~C~~C~G~G~~i   54 (66)
T PF00684_consen   19 PQCNGSGQVTRRQQTPGGVFQ-MQQTCPKCGGTGKII   54 (66)
T ss_dssp             TTSSSSSEEEEEEESSSTTEE-EEEE-TTTSSSSEE-
T ss_pred             cCCCCeeEEEEEEeCCCeEEE-EEEECCCCcceeeEE
Confidence            468999988766555544433 345799999988764

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=94.27  E-value=0.075  Score=52.42  Aligned_cols=51  Identities=31%  Similarity=0.450  Sum_probs=38.0

Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---h----HHHHHHHHHHHhHhhhC
Q 021128           29 EVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN---E----EANKRFAEINNAYEVLS   79 (317)
Q Consensus        29 ~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~---~----~~~~~f~~i~~Ay~~L~   79 (317)
                      +=..+..=.+.+++||||||..+..||||-+..   .    .|++.|..+++|+....
T Consensus       392 qpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~  449 (453)
T KOG0431|consen  392 QPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN  449 (453)
T ss_pred             ccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence            334455556999999999999999999997644   1    26777777777776543

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=93.43  E-value=0.17  Score=41.11  Aligned_cols=53  Identities=23%  Similarity=0.248  Sum_probs=37.2

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcc
Q 021128           26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE   82 (317)
Q Consensus        26 ~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~   82 (317)
                      .-..||||++..+.++|.+.|.+|-...+|++.++-    -.-..|..|.|.|..+-
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSf----YLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSF----YLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-H----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCH----HHHHHHHHHHHHHHHHH
Confidence            347899999999999999999999999999987643    23345777888776443

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=91.62  E-value=0.49  Score=37.50  Aligned_cols=38  Identities=24%  Similarity=0.410  Sum_probs=22.1

Q ss_pred             eecCCCCc-----cccCccceEEEEEecCceeEEEeeeccccCCCce
Q 021128          162 VIKPAPGK-----RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVK  203 (317)
Q Consensus       162 v~~~c~g~-----~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g  203 (317)
                      .|..|.|+     +.|+|.|.+.... +++   +.....|+.|.|.|
T Consensus        43 ~C~~C~GsG~~~C~~C~G~G~v~~~~-~g~---~q~~~~C~~C~G~G   85 (111)
T PLN03165         43 PCFPCSGTGAQVCRFCVGSGNVTVEL-GGG---EKEVSKCINCDGAG   85 (111)
T ss_pred             CCCCCCCCCCcCCCCCcCcCeEEEEe-CCc---EEEEEECCCCCCcc
Confidence            56777665     4577788765443 332   22345666666665

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=87.89  E-value=1  Score=39.28  Aligned_cols=41  Identities=32%  Similarity=0.432  Sum_probs=31.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcc
Q 021128           34 PRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE   82 (317)
Q Consensus        34 ~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~   82 (317)
                      +++||.+||.+|+.++..+|-     +++   +.-..|-.||+.+.-.+
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~-----gd~---~~~~~IEaAYD~ILM~r   41 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYA-----GDE---KSREAIEAAYDAILMER   41 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHHHHHHH
Confidence            589999999999999988872     232   45566888998766443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=84.34  E-value=2.4  Score=29.58  Aligned_cols=27  Identities=22%  Similarity=0.388  Sum_probs=24.1

Q ss_pred             CccchhcCCCCCCCHHHHHHHHHHHHH
Q 021128           25 KSYYEVLQVPRGASDEQIKRAYRKLAL   51 (317)
Q Consensus        25 ~~~Y~iLgv~~~as~~eIk~ayr~la~   51 (317)
                      .+-|+.|||+++++.+.|-.+|+....
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            356999999999999999999998865

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=83.70  E-value=1.1  Score=42.39  Aligned_cols=54  Identities=35%  Similarity=0.552  Sum_probs=42.6

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHhHhhhCCccccccccc
Q 021128           36 GASDEQIKRAYRKLALKYHPDKNQG----NEEANKRFAEINNAYEVLSDSETRNIYDT   89 (317)
Q Consensus        36 ~as~~eIk~ayr~la~~~hPd~~~~----~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~   89 (317)
                      -++..+|+.+|+..+...||++-..    ....++.|++|.+||++|++..+|...|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~   60 (335)
T KOG0724|consen    3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS   60 (335)
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence            3677889999999999999998742    11356789999999999998766666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	317
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		3e-19
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-18
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-18
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-18
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-18
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		3e-18
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-17
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		4e-15
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		1e-14
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		2e-14
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		2e-14
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		5e-14
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		8e-14
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		9e-14
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		1e-13
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-12
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		1e-11
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		3e-11
1nlt_A	248	The Crystal Structure Of Hsp40 Ydj1 Length = 248		1e-10
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		1e-09
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		1e-07
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		2e-07
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		2e-07
2qsa_A	109	Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2		6e-07
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		2e-06
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		2e-06
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		1e-04

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/66 (68%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRN 85
          YYEVL VPR AS E IK+AYRKLALK+HPDKN  N EEA +RF ++  AYEVLSD++ R+
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 86 IYDTYG 91
          IYD YG
Sbjct: 71 IYDRYG 76

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSET 83
          GK YY+ L + RGASDE+IKRAYR+ AL+YHPDKN+    A ++F EI  AY+VLSD   
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRK 60
Query: 84 RNIYDTYGEEGLK 96
          R I+D YGEEGLK
Sbjct: 61 REIFDRYGEEGLK 73

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Query: 26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEE-ANKRFAEINNAYEVLSDSETR 84
          SYYE+L VPR AS + IK+AYR+ AL++HPDKN  N+E A K+F E+  AYEVLSD   R
Sbjct: 3  SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 85 NIYDTYGEEGL 95
           IYD YG EGL
Sbjct: 63 EIYDRYGREGL 73

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Query: 23  AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
           A + YYE+L V + A + +I++AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+DS+
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 83  TRNIYDTYGEEGLKQHAAXXXXXXXXXVNIQDIFSSFFG 121
            R  YD YG    +Q             +  DIF   FG
Sbjct: 61  KRAAYDQYGHAAFEQ-GGMGGGGFGGGADFSDIFGDVFG 98

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Query: 23  AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
           A + YYE+L V + A + +I++AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+DS+
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 83  TRNIYDTYGEEGLKQHAAXXXXXXXXXVNIQDIFSSFFG 121
            R  YD YG    +Q             +  DIF   FG
Sbjct: 61  KRAAYDQYGHAAFEQGGM-GGGGFGGGADFSDIFGDVFG 98

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 54/74 (72%)
Query: 22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDS 81
           +G+S Y VL + + A+ + IK++YRKLALKYHPDKN  N EA  +F EINNA+ +L+D+
Sbjct: 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDA 73
Query: 82 ETRNIYDTYGEEGL 95
            RNIYD YG  GL
Sbjct: 74 TKRNIYDKYGSLGL 87

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
          A + YYE+L V + A + +I++AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+DS+
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 83 TRNIYDTYGEEGLKQ 97
           R  YD YG    +Q
Sbjct: 61 KRAAYDQYGHAAFEQ 75

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETR 84
          +YYEVL V   AS E IK+AYRKLAL++HPDKN  N EEA K+F  ++ AYEVLSDS+ R
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 85 NIYDTYG 91
          ++YD  G
Sbjct: 70 SLYDRAG 76

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 51/72 (70%)
Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
          +++Y +L V + AS  +I++A++KLALK HPDKN  N  A+  F +IN AYEVL D + R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 85 NIYDTYGEEGLK 96
            YD YGE+GL+
Sbjct: 81 KKYDKYGEKGLE 92

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
          YY++L VP+ AS+ QIK+A+ KLA+KYHPDKN+ + +A  +F EI  AYE LSD+  R  
Sbjct: 9  YYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKE 67
Query: 87 YDTYGEEGL 95
          YDT G    
Sbjct: 68 YDTLGHSAF 76

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 51/72 (70%)
Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
          +++Y +L V + AS  +I++A++KLALK HPDKN  N  A+  F +IN AYEVL D + R
Sbjct: 2  QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 85 NIYDTYGEEGLK 96
            YD YGE+GL+
Sbjct: 62 KKYDKYGEKGLE 73

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 48/65 (73%)
Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
          YY++L VPR AS ++IK+AY +LA KYHPD N+ + +A ++F+++  AYEVLSD   R  
Sbjct: 9  YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQ 68
Query: 87 YDTYG 91
          YD YG
Sbjct: 69 YDAYG 73

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
          YYE+L V RGASDE +K+AYR+LALK+HPDKN     A + F  I  AY VLS+ E R  
Sbjct: 9  YYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 87 YDTYG 91
          YD +G
Sbjct: 68 YDQFG 72

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 3/68 (4%)
Query: 26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRN 85
          +YY+VL V   A+ E++K+AYRKLALKYHPDKN    E   +F +I+ AYEVLSD++ R 
Sbjct: 7  TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE---KFKQISQAYEVLSDAKKRE 63
Query: 86 IYDTYGEE 93
          +YD  GE+
Sbjct: 64 LYDKGGEQ 71

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 3/67 (4%)
Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
          YY+VL V   ASD ++K+AYRK+ALK+HPDKN    E   +F +I+ AYEVLSD + R I
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAE---QFKQISQAYEVLSDEKKRQI 66
Query: 87 YDTYGEE 93
          YD  GEE
Sbjct: 67 YDQGGEE 73

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 109/279 (39%), Gaps = 50/279 (17%)
Query: 20  NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLS 79
           N +  K YY +L V      + IK AYR+LA KYHPD ++ N +A  +F ++  A+EVL 
Sbjct: 23  NAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLK 81
Query: 80  DSETRNIYDTYGEEGLKQH--------AAXXXXXXXXXVNIQDIFSSFFGGGPME-EDEK 130
           D + R  YD      L QH                    +  DIFSS FG    +   + 
Sbjct: 82  DEQRRAEYDQ-----LWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQH 136
Query: 131 IVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQ 190
             +G D+ +E+   LE+                  A   R  +    VY+      +F  
Sbjct: 137 AARGHDLEIEVAVFLEETL----------------AEQTRTISYNLPVYN------VF-G 173
Query: 191 MTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEP-GDLKFRIRTA 249
           M E    +  NVK           I  G+ DGQ +     G P  +G P GDL   I  A
Sbjct: 174 MIESETPKTLNVK-----------IPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIA 222
Query: 250 PHDRFRREGNNXXXXXXXXXXXXXXGFEKTIEHLDEHLV 288
           PH  F   G+N              G + T+  L E ++
Sbjct: 223 PHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESIL 261

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 28 YEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIY 87
          Y++L V   A+++++K+ YRK ALKYHPDK  G+ E   +F EI+ A+E+L+D + R IY
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE---KFKEISEAFEILNDPQKREIY 67
Query: 88 DTYGEEGLK 96
          D YG E  +
Sbjct: 68 DQYGLEAAR 76

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 28 YEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIY 87
          Y VL V R AS   IK+AY+KLA ++HPDKN+ +  A  RF +I+ AYE+LS+ E R  Y
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRTNY 78
Query: 88 DTYG 91
          D YG
Sbjct: 79 DHYG 82

>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 133 KGDDVIVELDATLEDLYMGGSLKVWREKNVI-KPAPGK-------RRCNCRN----EVYH 180
           +G D+  E+ A+LE+LY G + K+   K ++ K   G+       ++C   N    +   
Sbjct: 10  RGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVT 69
Query: 181 KQIGPGMFQQMTEQV---------------CDQCQNVKYEREGYFVTVDIEKGMQDGQEV 225
           +Q+GP M Q+   +                C  C   K E E   + V +E GM+DGQ +
Sbjct: 70  RQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRI 128
Query: 226 VFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNXXXXXXXXXXXXXXGFEKTIEHL 283
           VF  + +   D  PGD+ F +   PH  F+R+G++              G E  +EH+
Sbjct: 129 VFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHV 186

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 26 SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRN 85
          + Y++L VP  A+  QIK AY +    YHPD+N G+ EA +RF  I+ AY VL  +  R 
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77
Query: 86 IYD 88
           YD
Sbjct: 78 KYD 80

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG---NEEANKRFAEINNAYEVLSDS 81
           + YY++L V R A  ++I +AYRKLAL++HPD  Q     ++A K+F +I  A EVLSD 
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 82  ETRNIYD 88
           E R  +D
Sbjct: 442 EMRKKFD 448

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG---NEEANKRFAEINNAYEVLSDS 81
           + YY++L V R A  ++I +AYRKLAL++HPD  Q     ++A K+F +I  A EVLSD 
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 82  ETRNIYD 88
           E R  +D
Sbjct: 442 EXRKKFD 448

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
          K YY ++ V      + IK AYR+LA KYHPD ++   +A  RF E+  A+EVLSD + R
Sbjct: 5  KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRR 63
Query: 85 NIYD 88
            YD
Sbjct: 64 AEYD 67

>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2 Precursor From C.Elegans Length = 109

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 28 YEVLQVPRGASDEQ-IKRAYRKLALKYHPDKNQGNEE---ANKRFAEINNAYEVLSDSET 83
          Y+VL+V R   D+Q + +AYR LA K+HPD+ +  EE   A +RF  I  AYE L D E 
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 84 RNIYDTY 90
          +  YD Y
Sbjct: 78 KTNYDYY 84

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN------EEANKRFAEINNAYEVL 78
          K +Y +L     A+   +K+ Y+KL L YHPDK   +      EE  ++F EI+ A+++L
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 79 SDSETRNIYD 88
           + ET+  YD
Sbjct: 76 GNEETKKKYD 85

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN------EEANKRFAEINNAYEVL 78
          K +Y +L     A+   +K+ Y+KL L YHPDK   +      EE  ++F EI+ A+++L
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 79 SDSETRNIYD 88
           + ET+  YD
Sbjct: 70 GNEETKREYD 79

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 27 YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI 86
          YY +L     +S EQI   ++  AL+ HPDK+  N +A + F ++  A E+L++ E+R  
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRAR 81
Query: 87 YDTY 90
          YD +
Sbjct: 82 YDHW 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	317
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	2e-59
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	4e-43
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	7e-41
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-40
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	1e-39
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-39
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	5e-39
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-37
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	2e-37
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	7e-37
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	1e-36
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	2e-36
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	2e-35
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	2e-35
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	4e-34
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	8e-34
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	9e-34
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	1e-33
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	2e-33
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	3e-33
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	5e-33
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-32
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	3e-32
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	1e-31
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-28
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-28
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	1e-27
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-26
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-20
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	3e-19
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	2e-17
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	2e-16
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	1e-15
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	2e-15
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	2e-15
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	3e-13
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	3e-12
2guz_A	71	Mitochondrial import inner membrane translocase su	6e-12
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	6e-11
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	4e-05

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  192 bits (489), Expect = 2e-59
 Identities = 64/265 (24%), Positives = 98/265 (36%), Gaps = 40/265 (15%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           K YY +L V      + IK AYR+LA KYHPD ++ N +A  +F ++  A+EVL D + R
Sbjct: 28  KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRR 86

Query: 85  NIYDTYGEEGLKQHAAGGGR---GGGMGVNIQDIFSSFFG-GGPMEEDEKIVKGDDVIVE 140
             YD   +           +         +  DIFSS FG        +   +G D+ +E
Sbjct: 87  AEYDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIE 146

Query: 141 LDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQ 200
           +   LE+     +  +                                            
Sbjct: 147 VAVFLEETLAEQTRTI----------------------------------SYNLPVYNVF 172

Query: 201 NVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDRFRREGN 259
            +        + V I  G+ DGQ +     G P  + G  GDL   I  APH  F   G+
Sbjct: 173 GMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGH 232

Query: 260 NLHTTVTVTLVQALVGFEKTIEHLD 284
           NL   + +   +A +G + T+  L 
Sbjct: 233 NLEIVLPLAPWEAALGAKVTVPTLK 257

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  143 bits (362), Expect = 4e-43
 Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 10/103 (9%)

Query: 23  AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
           +G+S Y VL + + A+ + IK++YRKLALKYHPDKN  N EA  +F EINNA+ +L+D+ 
Sbjct: 15  SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74

Query: 83  TRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPM 125
            RNIYD YG  GL      G              +++F  GP 
Sbjct: 75  KRNIYDKYGSLGLYVAEQFGEEN----------VNTYFVSGPS 107

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  136 bits (346), Expect = 7e-41
 Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 1/99 (1%)

Query: 23  AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
           A + YYE+L V + A + +I++AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+DS+
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 83  TRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFG 121
            R  YD YG    +Q    GG G G G +  DIF   FG
Sbjct: 61  KRAAYDQYGHAAFEQ-GGMGGGGFGGGADFSDIFGDVFG 98

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  138 bits (350), Expect = 4e-40
 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           +++Y +L V + AS  +I++A++KLALK HPDKN  N  A+  F +IN AYEVL D + R
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61

Query: 85  NIYDTYGEEGLKQHAAGGGRG---GGMGVNIQDIFSSFFGGGPMEEDEKIVKGDDVIVE 140
             YD YGE+GL+ +  G             I D           E D  +  G+   V 
Sbjct: 62  KKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVN 120

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  133 bits (338), Expect = 1e-39
 Identities = 43/86 (50%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 23  AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDS 81
              +YYEVL V   AS E IK+AYRKLAL++HPDKN  N EEA K+F  ++ AYEVLSDS
Sbjct: 7   GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDS 66

Query: 82  ETRNIYDTYGEEGLKQHAAGGGRGGG 107
           + R++YD  G +  +      G   G
Sbjct: 67  KKRSLYDRAGCDSWRAGGGASGPSSG 92

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  133 bits (337), Expect = 2e-39
 Identities = 45/82 (54%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 27  YYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRN 85
           YYE+L VPR AS + IK+AYR+ AL++HPDKN  N E A K+F E+  AYEVLSD   R 
Sbjct: 4   YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63

Query: 86  IYDTYGEEGLKQHAAGGGRGGG 107
           IYD YG EGL     G  R   
Sbjct: 64  IYDRYGREGLTGTGTGPSRAEA 85

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181

 Score =  135 bits (341), Expect = 5e-39
 Identities = 30/155 (19%), Positives = 65/155 (41%), Gaps = 34/155 (21%)

Query: 137 VIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVC 196
           V  +L  +LE++Y G                    C  + ++ HK               
Sbjct: 5   VTHDLRVSLEEIYSG--------------------CTKKMKISHK--------------R 30

Query: 197 DQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRR 256
                     E   +T++++KG ++G ++ F ++G+   +  P D+ F ++  PH+ F+R
Sbjct: 31  LNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKR 90

Query: 257 EGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIS 291
           +G+++     ++L +AL G    +  LD   + + 
Sbjct: 91  DGSDVIYPARISLREALCGCTVNVPTLDGRTIPVV 125

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =  127 bits (321), Expect = 2e-37
 Identities = 45/76 (59%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query: 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSET 83
          GK YY+ L + RGASDE+IKRAYR+ AL+YHPDKN+    A ++F EI  AY+VLSD   
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRK 60

Query: 84 RNIYDTYGEEGLKQHA 99
          R I+D YGEEGLK   
Sbjct: 61 REIFDRYGEEGLKGSG 76

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score =  127 bits (322), Expect = 2e-37
 Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
              Y++L V   A+++++K+ YRK ALKYHPDK  G+ E   +F EI+ A+E+L+D + R
Sbjct: 8   TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE---KFKEISEAFEILNDPQKR 64

Query: 85  NIYDTYGEEGLKQHAAGGGRGGGMG 109
            IYD YG E  +      G GG  G
Sbjct: 65  EIYDQYGLEAARSGGPSFGPGGPGG 89

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score =  131 bits (332), Expect = 7e-37
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 32/190 (16%)

Query: 133 KGDDVIVELDATLEDLYMGGSLKVWREKNVI---------KPAPGKRRC-NCR---NEVY 179
           +G D+  E+ A+LE+LY G + K+   K ++         K     ++C +C     +  
Sbjct: 10  RGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKG-AVKKCTSCNGQGIKFV 68

Query: 180 HKQIGPGMFQQMTEQVCDQCQNV----------------KYEREGYFVTVDIEKGMQDGQ 223
            +Q+GP + +   +  CD C                   K E E   + V +E GM+DGQ
Sbjct: 69  TRQMGPMIQR--FQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQ 126

Query: 224 EVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHL 283
            +VF  + +   D  PGD+ F +   PH  F+R+G++L     + L+ A+ G E  +EH+
Sbjct: 127 RIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHV 186

Query: 284 DEHLVDISTK 293
               + +   
Sbjct: 187 SGDWLKVGIV 196

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  125 bits (317), Expect = 1e-36
 Identities = 31/85 (36%), Positives = 42/85 (49%)

Query: 23  AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
           +  + Y++L VP  A+  QIK AY +    YHPD+N G+ EA +RF  I+ AY VL  + 
Sbjct: 15  SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSAT 74

Query: 83  TRNIYDTYGEEGLKQHAAGGGRGGG 107
            R  YD            G G   G
Sbjct: 75  LRRKYDRGLLSDEDLRGPGSGPSSG 99

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score =  125 bits (315), Expect = 2e-36
 Identities = 45/75 (60%), Positives = 53/75 (70%), Gaps = 1/75 (1%)

Query: 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDS 81
              YYEVL VPR AS E IK+AYRKLALK+HPDKN  N EEA +RF ++  AYEVLSD+
Sbjct: 7  GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDA 66

Query: 82 ETRNIYDTYGEEGLK 96
          + R+IYD YG     
Sbjct: 67 KKRDIYDRYGSGPSS 81

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  123 bits (310), Expect = 2e-35
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 25  KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
           + YY +L     +S EQI   ++  AL+ HPDK+  N +A + F ++  A E+L++ E+R
Sbjct: 20  EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESR 79

Query: 85  NIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFG 121
             YD +    +        +   +  +         G
Sbjct: 80  ARYDHWRRSQMSM---PFQQWEALN-DSVKTSGPSSG 112

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180

 Score =  125 bits (316), Expect = 2e-35
 Identities = 42/160 (26%), Positives = 61/160 (38%), Gaps = 37/160 (23%)

Query: 133 KGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMT 192
                 V L  TLE+LY+G   K+            K                       
Sbjct: 2   APRSHEVPLLVTLEELYLGKRKKI------------KVTRKR------------------ 31

Query: 193 EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDG-EPGDLKFRIRTAPH 251
                     K   E   V V+I+ G +DG ++ +  +G+ +  G  PGDL   I+T  H
Sbjct: 32  ------FIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTH 85

Query: 252 DRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIS 291
            RF R+  +L   VT+ LV+AL GF   +  LD   + I 
Sbjct: 86  PRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIP 125

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  121 bits (305), Expect = 4e-34
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 18  ALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN------EEANKRFAEI 71
           A+  +  K +Y +L     A+   +K+ Y+KL L YHPDK   +      EE  ++F EI
Sbjct: 3   AVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEI 62

Query: 72  NNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGG 123
           + A+++L + ET+  YD        +            V ++++  +     
Sbjct: 63  DQAWKILGNEETKREYDLQR----CEDDLRNVGPVDAQVYLEEMSWNEGDHS 110

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score =  118 bits (297), Expect = 8e-34
 Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 23  AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
           +  SYY++L VP+ AS+ QIK+A+ KLA+KYHPDKN+ + +A  +F EI  AYE LSD+ 
Sbjct: 5   SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDAN 63

Query: 83  TRNIYDTYGEEGLKQHAAGGGRGGG 107
            R  YDT G           G   G
Sbjct: 64  RRKEYDTLGHSAFTSGKGQSGPSSG 88

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score =  118 bits (297), Expect = 9e-34
 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
               Y VL V R AS   IK+AY+KLA ++HPDKN+ +  A  RF +I+ AYE+LS+ E
Sbjct: 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEE 73

Query: 83 TRNIYDTYGEEGLK 96
           R  YD YG     
Sbjct: 74 KRTNYDHYGSGPSS 87

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  117 bits (296), Expect = 1e-33
 Identities = 34/72 (47%), Positives = 49/72 (68%)

Query: 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
          +   YY++L VPR AS ++IK+AY +LA KYHPD N+ + +A ++F+++  AYEVLSD  
Sbjct: 5  SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEV 64

Query: 83 TRNIYDTYGEEG 94
           R  YD YG   
Sbjct: 65 KRKQYDAYGSGP 76

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170

 Score =  119 bits (301), Expect = 2e-33
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 40/158 (25%)

Query: 135 DDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQ 194
           + V V L  +LEDL++G                 K      +    K             
Sbjct: 1   ETVQVNLPVSLEDLFVGKKKSF------------KIGRKGPHGASEKTQ----------- 37

Query: 195 VCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHDR 253
                           + + ++ G + G ++ +   G+     G    L+F I+   H  
Sbjct: 38  ----------------IDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPN 81

Query: 254 FRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIS 291
           F+R+G++L  T+ ++  ++L+GF KTI+ +D   + +S
Sbjct: 82  FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLS 119

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score =  116 bits (293), Expect = 3e-33
 Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
            YY+VL V   ASD ++K+AYRK+ALK+HPDKN    E   +F +I+ AYEVLSD + R
Sbjct: 8  TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAE---QFKQISQAYEVLSDEKKR 64

Query: 85 NIYDTYGEE 93
           IYD  GEE
Sbjct: 65 QIYDQGGEE 73

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score =  116 bits (292), Expect = 5e-33
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 12/92 (13%)

Query: 18  ALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN------EEANKRFAEI 71
           AL     K +Y +L     A+   +K+ Y+KL L YHPDK   +      EE  ++F EI
Sbjct: 9   ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEI 68

Query: 72  NNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG 103
           + A+++L + ET+  YD              G
Sbjct: 69  DQAWKILGNEETKKKYDLQR------SGPSSG 94

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score =  115 bits (289), Expect = 1e-32
 Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
          +   YYE+L V RGASDE +K+AYR+LALK+HPDKN     A + F  I  AY VLS+ E
Sbjct: 5  SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPE 63

Query: 83 TRNIYDTYGEEGLK 96
           R  YD +G     
Sbjct: 64 KRKQYDQFGSGPSS 77

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score =  114 bits (287), Expect = 3e-32
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDS 81
            K    V++      + + K+  R+L LK+HPDKN  N + AN+ F  + N    L   
Sbjct: 14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL--- 70

Query: 82 ETRNIYDTYGEEGLKQ 97
          E +   D   +   ++
Sbjct: 71 EKQAFLDQNADRASRR 86

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score =  113 bits (284), Expect = 1e-31
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 23 AGKSYYEVLQVPRGASDEQ-IKRAYRKLALKYHPDKNQGNEE---ANKRFAEINNAYEVL 78
            ++ Y+VL+V R   D+Q + +AYR LA K+HPD+ +  EE   A +RF  I  AYE L
Sbjct: 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETL 72

Query: 79 SDSETRNIYDTYGEEGLKQ 97
           D E +  YD Y +   ++
Sbjct: 73 KDDEAKTNYDYYLDHPDQR 91

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score =  106 bits (267), Expect = 2e-28
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 10/98 (10%)

Query: 25  KSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
               ++L + R A  +   +++AY K   ++HPDK  G+EE   +  ++N  Y+ + D  
Sbjct: 11  LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG-GDEE---KMKKMNTLYKKMEDGV 66

Query: 83  TRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFF 120
                  +G        A       +   +  I+   +
Sbjct: 67  KYAHQPDFGGFW----DATEVFASSLNPGVDAIYCKQW 100

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score =  104 bits (262), Expect = 2e-28
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 18/117 (15%)

Query: 25  KSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
               ++L + R A  +   +++AY K   ++HPDK  G+EE   +  ++N  Y+ + D  
Sbjct: 8   LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG-GDEE---KMKKMNTLYKKMEDGV 63

Query: 83  TRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIFSSFFGGGPMEE---DEKIVKGDD 136
                  +G           G          D +  ++     E     E++   DD
Sbjct: 64  KYAHQPDFGGFWDATEIPTYG---------TDEWEQWWNAFNEENLFCSEEMPSSDD 111

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score =  102 bits (255), Expect = 1e-27
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD 80
          +   K  +++L V  GAS +++ +AYRKLA+  HPDK      +   F  + NA   L  
Sbjct: 23 IRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLK 81

Query: 81 SETRNIYD 88
          +       
Sbjct: 82 NIKSGPSS 89

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  109 bits (272), Expect = 1e-26
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 15  LCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNA 74
               +     +++Y +L V + AS  +I++A++KLALK HPDKN  N  A+  F +IN A
Sbjct: 11  SSGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRA 70

Query: 75  YEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGMGVNIQDIF---SSFFGGGPMEEDEKI 131
           YEVL D + R  YD YGE+GL+ +  G             I+            E D  +
Sbjct: 71  YEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAV 130

Query: 132 VKGDDVIVE 140
             G+   V 
Sbjct: 131 NSGELWFVN 139

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 89.7 bits (223), Expect = 3e-20
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 17  YALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEE---ANKRFAEINN 73
             L     + YY++L V R A  ++I +AYRKLAL++HPD  Q  EE   A K+F +I  
Sbjct: 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433

Query: 74  AYEVLSDSETRNIYD 88
           A EVLSD E R  +D
Sbjct: 434 AKEVLSDPEMRKKFD 448

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 82.6 bits (203), Expect = 3e-19
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 11  LLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEE---ANKR 67
           LL  +     + AG++ ++ + +    + EQ+K+ YRK  L  HPDK  G      A   
Sbjct: 105 LLSTMHTV--LWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMI 162

Query: 68  FAEINNAYEVLSDSETRNIY 87
           F E+N+A+    +   + +Y
Sbjct: 163 FMELNDAWSEFENQGQKPLY 182

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 74.6 bits (183), Expect = 2e-16
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 27 YYEVLQVPRGAS--DEQIKRAYRKLALKYHPDKNQGNEEANKR-----FAEINNAYEVLS 79
          Y+ +  +P       + +   ++ L  +YHPDK     +A +       A IN A++ L 
Sbjct: 3  YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62

Query: 80 DSETRNIYD 88
              R  Y 
Sbjct: 63 HPLMRAEYL 71

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 70.0 bits (171), Expect = 1e-15
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 25 KSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
          +   E+L++PR       ++++AY++ +L  HPDK  G+        E+N+ +       
Sbjct: 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG-GSHA---LMQELNSLWGTFKTEV 66

Query: 83 TRNIYDTYG 91
               +  G
Sbjct: 67 YNLRMNLGG 75

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 72.8 bits (178), Expect = 2e-15
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 11  LLCALCYAL-NVIAGKSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEEANKR 67
             C  C AL      + Y+ ++   R       +++  Y++L    HPD      +  K 
Sbjct: 28  FFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKD 87

Query: 68  FA-----EINNAYEVLSDSETRNIYD 88
           F+      +N+AY+ L    +R +Y 
Sbjct: 88  FSEKHSTLVNDAYKTLLAPLSRGLYL 113

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 71.9 bits (176), Expect = 2e-15
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 16  CYALNVIAGKSYYEVLQVPRGA-------SDEQIKRAYRKLALKYHPDKNQGNEEANKRF 68
              +      ++YE+                 ++++ YR+L  ++HPD  Q   E   + 
Sbjct: 2   NALVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSE---QS 58

Query: 69  AEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGGRGGGM 108
           + +N AY  L D   R+ Y       +             
Sbjct: 59  STLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTT 98

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 63.5 bits (154), Expect = 3e-13
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 8  LLFLLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEE---A 64
          +  LL  +     + AG++ ++ + +    + EQ+K+ YRK  L  HP K  G      A
Sbjct: 18 IRALLSTMHTV--LWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYA 75

Query: 65 NKRFAEINNAYEVLSD 80
             F E+N+A+    +
Sbjct: 76 KMIFMELNDAWSEFEN 91

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 254 FRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK 293
           F+R+G++L     + L+ A+ G E  +EH+    + +   
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIV 41

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 59.3 bits (144), Expect = 6e-12
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 27 YYEVLQVPRGA-SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETR 84
            ++L +     + +++K  +RK+ L  HPDK  G+        +IN A + L      
Sbjct: 16 ALQILNLTENTLTKKKLKEVHRKIMLANHPDKG-GSPFL---ATKINEAKDFLEKRGIS 70

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 57.7 bits (139), Expect = 6e-11
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 26  SYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-------EEANKRFAEINNAYEVL 78
           S ++ + +        ++++Y++  L  HPDK Q           A K F  +  A++  
Sbjct: 41  SGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHF 100

Query: 79  SDS 81
           +  
Sbjct: 101 NTL 103

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 248 TAPHDRFRREGNNLHTTVTVTLVQALVG 275
           +  H  F   G+NL   + +   +A +G
Sbjct: 1   SNAHPLFDIVGHNLEIVLPLAPWEAALG 28

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	100.0
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	100.0
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	100.0
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	100.0
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	100.0
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.91
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.88
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.88
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.87
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.87
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.86
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.86
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.86
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.86
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.86
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.85
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.85
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.85
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.85
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.82
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.82
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.8
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.78
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.76
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.74
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.74
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.73
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.73
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.72
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.72
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.7
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.69
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.68
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.67
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.67
2guz_A	71	Mitochondrial import inner membrane translocase su	99.65
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.63
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.62
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.53
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.11
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.08
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.01
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.01
2guz_B	65	Mitochondrial import inner membrane translocase su	98.86
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	98.69
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	98.66
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	98.65
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	98.64
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	98.42
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	96.46
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	92.1
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	89.64

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=100.00  E-value=2.2e-60  Score=444.50  Aligned_cols=260  Identities=27%  Similarity=0.395  Sum_probs=128.6

Q ss_pred             HhhhccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccc
Q 021128           17 YALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK   96 (317)
Q Consensus        17 ~~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~   96 (317)
                      +....+..+|||++|||+++||.+|||+|||+||++||||+|+++ .|+++|++|++||++|+||.+|+.||+|+..+..
T Consensus        20 ~~~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~   98 (329)
T 3lz8_A           20 FQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRND   98 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-HHHHHHHHHHHHHHHhhhhhhhcccchhhccccC
Confidence            344455678999999999999999999999999999999999865 5889999999999999999999999999654221


Q ss_pred             cccCC-CC-CCCCc-ccChhhhhhhccCCCC-CCcccccccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCcccc
Q 021128           97 QHAAG-GG-RGGGM-GVNIQDIFSSFFGGGP-MEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRC  172 (317)
Q Consensus        97 ~~~~~-~~-~~~~~-~~~~~d~F~~~fg~~~-~~~~~~~~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C  172 (317)
                      .+..+ .+ .+++| +.++.|+|++|||++. ....+...++.|+.++|.|||+|+|.|+++++.+.+.+|+        
T Consensus        99 ~~~~~~~~~~~~~f~~~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~--------  170 (329)
T 3lz8_A           99 PGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN--------  170 (329)
T ss_dssp             --------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC--------
T ss_pred             CCcccccccccCCcCCCchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec--------
Confidence            11100 00 01122 1357899999998632 1112235689999999999999999999999998876642        


Q ss_pred             CccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCC-CCCCccEEEEEEEeCC
Q 021128          173 NCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI-DGEPGDLKFRIRTAPH  251 (317)
Q Consensus       173 ~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDL~v~i~v~~h  251 (317)
                       +.|.                         ..+...++++|.||||+++|++|+|+|+|++++ ++.+|||||+|+++||
T Consensus       171 -g~G~-------------------------v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~~GDL~v~I~v~~h  224 (329)
T 3lz8_A          171 -VFGM-------------------------IESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPH  224 (329)
T ss_dssp             -SCC--------------------------CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC---CCCCCEEEEECCCCC
T ss_pred             -CCeE-------------------------EEEecceEEEEeCCCCCCCCCEEEEcccccCCCCCCCCCcEEEEEEEecC
Confidence             1121                         123335689999999999999999999999986 4678999999999999


Q ss_pred             CCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128          252 DRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       252 ~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      +.|+|+|+||+++++|+|+||+||++++|+||||+ +.|+++..+++  |+.++|+|||+|..
T Consensus       225 ~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~gt~~--g~~~rl~G~GmP~~  284 (329)
T 3lz8_A          225 PLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPGSQA--GQRLRIKGKGLVSK  284 (329)
T ss_dssp             SSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTTCCT--TCEEEETTCSCBCS
T ss_pred             CccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCCCCC--CCEEEEcCCCCCCC
Confidence            99999999999999999999999999999999998 79999988876  69999999999963

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=100.00  E-value=9.2e-43  Score=314.10  Aligned_cols=181  Identities=29%  Similarity=0.550  Sum_probs=162.6

Q ss_pred             cccCCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc----------cccCccceEEE-EEecCceeEEEe------
Q 021128          131 IVKGDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK----------RRCNCRNEVYH-KQIGPGMFQQMT------  192 (317)
Q Consensus       131 ~~kg~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~----------~~C~g~G~~~~-~~~~~g~~~~~~------  192 (317)
                      +.++.|++++|.|||||||+|+++++.+.+. .|..|.|+          +.|+|.|.+.. ++.++ ++++++      
T Consensus         8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C   86 (248)
T 1nlt_A            8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDVC   86 (248)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCTTC
T ss_pred             CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCCCC
Confidence            4579999999999999999999999999986 67889775          45888887654 46666 555443      


Q ss_pred             ---------eeccccCCCceEEeeCEEEEEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcEEE
Q 021128          193 ---------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHT  263 (317)
Q Consensus       193 ---------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~  263 (317)
                               +++|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++++++.+|||||+|+++||+.|+|+|+|||+
T Consensus        87 ~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~  166 (248)
T 1nlt_A           87 HGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVY  166 (248)
T ss_dssp             SSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred             CCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEE
Confidence                     67899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCHHHHhcCCEEEEecCCCCeEEEeeC--CcccCCCCcEEEecCCccccc
Q 021128          264 TVTVTLVQALVGFEKTIEHLDEHLVDISTK--VSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       264 ~~~Isl~eAllG~~~~v~tldG~~i~i~~~--~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      +++|||+|||||++++|+||||+.+.|+++  +++++  |+.++|+|||+|..
T Consensus       167 ~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~--g~~~rl~g~Gmp~~  217 (248)
T 1nlt_A          167 EAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAP--GMRKVIEGKGMPIP  217 (248)
T ss_dssp             EEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCST--TCEEEETTCSCBCS
T ss_pred             EEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCC--CeEEEEcCCCCccC
Confidence            999999999999999999999998999887  45775  69999999999975

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=100.00  E-value=1.8e-38  Score=273.22  Aligned_cols=145  Identities=21%  Similarity=0.401  Sum_probs=134.2

Q ss_pred             CCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEE
Q 021128          134 GDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTV  213 (317)
Q Consensus       134 g~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V  213 (317)
                      +.|+.++|.|||||||+|+++++.+.                                  .+|+.|+|.+++.+.++++|
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~----------------------------------~~c~~c~G~g~~~~~~~l~V   47 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKIS----------------------------------HKRLNPDGKSIRNEDKILTI   47 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEE----------------------------------EEEECTTSSCEEEEEEEEEE
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEe----------------------------------cccCCCCCceEEEEeEEEEE
Confidence            46899999999999999999999764                                  35889999999999999999


Q ss_pred             EecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeC
Q 021128          214 DIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK  293 (317)
Q Consensus       214 ~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~  293 (317)
                      .||||+++|++|+|+|+|++++++.+|||||+|++++|+.|+|+|+|||++++|||+||++|++++|+||||+.+.|+++
T Consensus        48 ~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~i~  127 (181)
T 3agx_A           48 EVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFK  127 (181)
T ss_dssp             EECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEEC
T ss_pred             EECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEEEEEcCHHHHhCCCEEEeECCCCCEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998999999


Q ss_pred             CcccCCCCcEEEecCCccccc
Q 021128          294 VSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       294 ~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      .++++  |+.++|+|||+|..
T Consensus       128 ~~t~~--g~~~rl~g~Gmp~~  146 (181)
T 3agx_A          128 DVIRP--GMRRKVPGEGLPLP  146 (181)
T ss_dssp             SCCCT--TCEEEETTCSCBCS
T ss_pred             CccCC--CcEEEECCcCCCcC
Confidence            88886  69999999999975

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.2e-35  Score=255.40  Aligned_cols=144  Identities=30%  Similarity=0.445  Sum_probs=130.6

Q ss_pred             cCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEE
Q 021128          133 KGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVT  212 (317)
Q Consensus       133 kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~  212 (317)
                      ++.|+++++.|||||||+|+++++.+.+.+.                                |+    .+++.+.++++
T Consensus         2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~--------------------------------c~----~g~~~~~~~l~   45 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRF--------------------------------IE----HKVRNEENIVE   45 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCEEEEEEEEEEEE--------------------------------ET----TEEEEEEEEEE
T ss_pred             CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEe--------------------------------cC----CceEEeeEEEE
Confidence            4789999999999999999999999886543                                21    15567788999


Q ss_pred             EEecCCCCCCCEEEEcccCCC-CCCCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEe
Q 021128          213 VDIEKGMQDGQEVVFYEDGEP-KIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDIS  291 (317)
Q Consensus       213 V~Ip~G~~~G~~i~~~g~G~~-~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~  291 (317)
                      |.||||+++|++|+|+|+|++ .+++.+|||||+|+++||+.|+|+|+|||++++|||+||++|++++|+||||+.+.|+
T Consensus        46 V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~v~i~  125 (180)
T 2q2g_A           46 VEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIP  125 (180)
T ss_dssp             EEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTCCEEEEE
T ss_pred             EEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHHHHhCCCEEEeeCCCCCEEEEE
Confidence            999999999999999999999 6788899999999999999999999999999999999999999999999999989999


Q ss_pred             eCCcccCCCCcEEEecCCccccc
Q 021128          292 TKVSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       292 ~~~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      ++.++++  |+.++|+|||+|..
T Consensus       126 ip~~t~~--g~~~rl~g~Gmp~~  146 (180)
T 2q2g_A          126 IKEIVNP--KTRKIVPNEGMPIK  146 (180)
T ss_dssp             ECSCCCT--TCEEEETTCSCBCS
T ss_pred             CCCccCC--CEEEEECCcCCCcC
Confidence            9988886  69999999999964

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=100.00  E-value=5.3e-34  Score=242.99  Aligned_cols=139  Identities=22%  Similarity=0.402  Sum_probs=125.2

Q ss_pred             CceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEE
Q 021128          135 DDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVD  214 (317)
Q Consensus       135 ~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~  214 (317)
                      +|+++++.|||||||+|+++++.+.+..                                    +.  |.+ +.++++|.
T Consensus         1 ~d~~~~l~islee~~~G~~k~i~~~~~~------------------------------------~~--G~~-~~~~l~V~   41 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG------------------------------------PH--GAS-EKTQIDIQ   41 (170)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEE------------------------------------TT--TEE-EEEEEEEE
T ss_pred             CCEEEEEEeEHHHhhCCcEEEEEEEEec------------------------------------CC--CcE-EeEEEEEE
Confidence            4789999999999999999999887531                                    11  223 56889999


Q ss_pred             ecCCCCCCCEEEEcccCCC-CCCCCCccEEEEEEEeCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeC
Q 021128          215 IEKGMQDGQEVVFYEDGEP-KIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK  293 (317)
Q Consensus       215 Ip~G~~~G~~i~~~g~G~~-~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~  293 (317)
                      ||||+++|++|+|+|+|++ .+++.+|||||+|+++||+.|+|+|+|||++++|||+||+||++++|+||||+.+.|+++
T Consensus        42 Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~~i~i~  121 (170)
T 1c3g_A           42 LKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRV  121 (170)
T ss_dssp             CCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEES
T ss_pred             eCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHHhCCCeEEeeCCCCCEEEEECC
Confidence            9999999999999999995 467789999999999999999999999999999999999999999999999998999999


Q ss_pred             CcccCCCCcEEEecCCccccc
Q 021128          294 VSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       294 ~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      .++++  |+.++|+|||+|..
T Consensus       122 ~~t~~--g~~~rl~g~G~p~~  140 (170)
T 1c3g_A          122 QPVQP--SQTSTYPGQGMPTP  140 (170)
T ss_dssp             SCCCT--TCEEECTTCSCBCS
T ss_pred             CccCC--CcEEEEeCCCCCcC
Confidence            88886  69999999999964

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.91  E-value=1.7e-25  Score=175.03  Aligned_cols=98  Identities=49%  Similarity=0.956  Sum_probs=70.7

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccccCCCC
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQHAAGGG  103 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~~  103 (317)
                      ..|||+||||+++||.+|||+|||+|++++|||+++.+++++++|++|++||++|+||.+|+.||++|++++.....+++
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~   81 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGG   81 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC----
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCC
Confidence            57999999999999999999999999999999999876668899999999999999999999999999998775422111


Q ss_pred             CCCCcccChhhhhhhccCC
Q 021128          104 RGGGMGVNIQDIFSSFFGG  122 (317)
Q Consensus       104 ~~~~~~~~~~d~F~~~fg~  122 (317)
                      +.++ +.++.++|+++|+.
T Consensus        82 ~~~~-~~~~~~~f~~~f~~   99 (103)
T 1bq0_A           82 GFGG-GADFSDIFGDVFGD   99 (103)
T ss_dssp             -------------------
T ss_pred             CCCC-CCCHHHHHHHHHHh
Confidence            1111 12456777777753

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.88  E-value=2.9e-23  Score=153.75  Aligned_cols=73  Identities=62%  Similarity=1.056  Sum_probs=68.1

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ   97 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   97 (317)
                      +.|||+||||+++||.++||+|||++++++|||++++.. +.+.|++|++||++|+||.+|+.||++|.+++..
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   74 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence            579999999999999999999999999999999998644 7899999999999999999999999999987653

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=3.8e-23  Score=157.06  Aligned_cols=77  Identities=48%  Similarity=0.822  Sum_probs=70.4

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQH   98 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~   98 (317)
                      .....|||+||||+++|+.+|||+|||+|++++|||+++. +++.++|++|++||++|+||.+|+.||++|.+++..+
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   79 (88)
T 2ctr_A            3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG   79 (88)
T ss_dssp             SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCS
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccC
Confidence            3456899999999999999999999999999999999985 4588999999999999999999999999999877643

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=4e-23  Score=153.75  Aligned_cols=74  Identities=46%  Similarity=0.814  Sum_probs=69.0

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG   94 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~   94 (317)
                      .....|||+||||+++|+.++||+|||++++++|||+++.++++.++|++|++||++|+||.+|+.||++|..+
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            35578999999999999999999999999999999999876678999999999999999999999999999764

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.87  E-value=4.1e-23  Score=158.15  Aligned_cols=75  Identities=41%  Similarity=0.827  Sum_probs=69.3

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQH   98 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~   98 (317)
                      ++...|||+||||+++|+.+|||+|||+|++++|||+++.+.   ++|++|++||++|+||.+|+.||++|.+++..+
T Consensus         4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~---~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~   78 (92)
T 2o37_A            4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEILNDPQKREIYDQYGLEAARSG   78 (92)
T ss_dssp             CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCH---HHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred             cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChH---HHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence            456789999999999999999999999999999999997654   699999999999999999999999999887754

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.6e-22  Score=151.61  Aligned_cols=75  Identities=59%  Similarity=0.927  Sum_probs=68.6

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHhHhhhCCccccccccccCcccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE-EANKRFAEINNAYEVLSDSETRNIYDTYGEEGL   95 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~   95 (317)
                      +....|||+||||+++|+.+|||+|||++++++|||+++... .+.++|++|++||++|+||.+|+.||++|+.++
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   80 (82)
T 2ej7_A            5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS   80 (82)
T ss_dssp             CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            345689999999999999999999999999999999998653 588999999999999999999999999998754

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=1.5e-22  Score=154.99  Aligned_cols=76  Identities=54%  Similarity=0.836  Sum_probs=69.8

Q ss_pred             cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128           22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ   97 (317)
Q Consensus        22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   97 (317)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++.+ +.++++|++|++||++|+||.+|+.||++|.+++..
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   82 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA   82 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            3467999999999999999999999999999999999865 358899999999999999999999999999887754

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.86  E-value=2.2e-22  Score=147.50  Aligned_cols=70  Identities=53%  Similarity=0.905  Sum_probs=62.7

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEE   93 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~   93 (317)
                      +....|||+||||+++|+.++||+|||++++++|||++++.   .+.|++|++||++|+||.+|+.||++|++
T Consensus         4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   73 (73)
T 2och_A            4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGEE   73 (73)
T ss_dssp             --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence            45678999999999999999999999999999999999765   47999999999999999999999999864

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=2e-22  Score=149.63  Aligned_cols=73  Identities=51%  Similarity=0.852  Sum_probs=67.6

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG   94 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~   94 (317)
                      .....|||+||||+++|+.+|||+|||++++++|||+++.. .+.+.|++|++||++|+||.+|+.||++|.++
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP-GATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSH-HHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            45678999999999999999999999999999999999764 48899999999999999999999999999764

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=2.9e-22  Score=155.53  Aligned_cols=70  Identities=40%  Similarity=0.674  Sum_probs=65.7

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcccccccccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTY   90 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~   90 (317)
                      .+...|||+||||+++|+.+|||+|||+|+++||||+++.++++.++|++|++||++|+||.+|+.||++
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~   82 (99)
T 2yua_A           13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRG   82 (99)
T ss_dssp             SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred             CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            3557899999999999999999999999999999999987777899999999999999999999999984

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1e-22  Score=161.63  Aligned_cols=76  Identities=30%  Similarity=0.486  Sum_probs=70.4

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK   96 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~   96 (317)
                      .+...|||+||||+++|+.+|||+|||+|++++|||++++++++.++|++|++||++|+||.+|+.||++|.+++.
T Consensus        16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~   91 (112)
T 2ctq_A           16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS   91 (112)
T ss_dssp             CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence            4456899999999999999999999999999999999987667899999999999999999999999999987654

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.85  E-value=3.4e-22  Score=157.78  Aligned_cols=77  Identities=53%  Similarity=0.874  Sum_probs=71.5

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ   97 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   97 (317)
                      .....|||+||||+++|+.+|||+|||+|++++|||++++++++.++|++|++||++|+||.+|+.||++|..++..
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~~   89 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYV   89 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccccc
Confidence            45578999999999999999999999999999999999877778999999999999999999999999999887643

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.85  E-value=3.9e-22  Score=154.64  Aligned_cols=73  Identities=60%  Similarity=1.008  Sum_probs=65.5

Q ss_pred             CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128           25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ   97 (317)
Q Consensus        25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   97 (317)
                      .|||+||||+++|+.+|||+|||++++++|||+++.. +.+.++|++|++||++|+||.+|+.||++|.+++..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~   75 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG   75 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            6899999999999999999999999999999999865 358899999999999999999999999999887754

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.85  E-value=5.1e-22  Score=150.80  Aligned_cols=73  Identities=47%  Similarity=0.723  Sum_probs=67.1

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG   94 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~   94 (317)
                      .....|||+||||+++|+.+|||+|||++++++|||++++. .+.++|++|++||++|+||.+|+.||++|+.+
T Consensus        13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP-GAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCST-THHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            34578999999999999999999999999999999999864 48899999999999999999999999999753

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.82  E-value=3.9e-21  Score=147.64  Aligned_cols=71  Identities=35%  Similarity=0.644  Sum_probs=64.7

Q ss_pred             cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHhHhhhCCccccccccccCc
Q 021128           22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN------EEANKRFAEINNAYEVLSDSETRNIYDTYGE   92 (317)
Q Consensus        22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~------~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~   92 (317)
                      +...|||+||||+++|+.+|||+|||+|+++||||+++.+      ..+.++|++|++||++|+||.+|+.||.+..
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            4578999999999999999999999999999999998742      4588999999999999999999999998654

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.82  E-value=6.4e-21  Score=166.81  Aligned_cols=74  Identities=49%  Similarity=0.864  Sum_probs=69.5

Q ss_pred             CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccc
Q 021128           25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQH   98 (317)
Q Consensus        25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~   98 (317)
                      +|||++|||+++|+.+|||+|||++|+++|||++++++++.++|++|++||++|+||.+|+.||++|++++...
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~   75 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN   75 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccc
Confidence            58999999999999999999999999999999998777789999999999999999999999999999877543

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.80  E-value=1.3e-20  Score=148.75  Aligned_cols=73  Identities=37%  Similarity=0.590  Sum_probs=66.7

Q ss_pred             ccCCCccchhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHhHhhhCCccccccccccCcc
Q 021128           21 VIAGKSYYEVLQVPRGA-SDEQIKRAYRKLALKYHPDKNQG---NEEANKRFAEINNAYEVLSDSETRNIYDTYGEE   93 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~a-s~~eIk~ayr~la~~~hPd~~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~   93 (317)
                      .....|||+||||+++| +.+|||+|||++++++|||++++   .+.+.++|++|++||++|+||.+|+.||+++..
T Consensus        11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            34578999999999999 99999999999999999999986   345889999999999999999999999998864

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=1.4e-19  Score=137.80  Aligned_cols=65  Identities=31%  Similarity=0.468  Sum_probs=59.8

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcccccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNI   86 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~   86 (317)
                      +....|||+||||+++|+.+|||+|||+|+++||||++++.. +.++|++|++||++|+||.+|+.
T Consensus        23 ~~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           23 IRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG-SEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             HHTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTT-HHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HhcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCcccccC
Confidence            445799999999999999999999999999999999998644 78999999999999999999874

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.76  E-value=3e-19  Score=149.55  Aligned_cols=72  Identities=33%  Similarity=0.596  Sum_probs=65.3

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHHHHhHhhhCCccccccccccCc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE------EANKRFAEINNAYEVLSDSETRNIYDTYGE   92 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~   92 (317)
                      .+...|||+||||+++|+.++||+|||+|++++|||+++.+.      .|.++|++|++||++|+||.+|+.||..+.
T Consensus         6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            455789999999999999999999999999999999997652      367999999999999999999999998664

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.74  E-value=1.3e-19  Score=143.53  Aligned_cols=65  Identities=22%  Similarity=0.425  Sum_probs=60.9

Q ss_pred             CCccchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCc
Q 021128           24 GKSYYEVLQVPRGASD--EQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGE   92 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~--~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~   92 (317)
                      ..+||+||||+++|+.  ++||+|||+||+++|||++++    .++|++|++||++|+||.+|+.||.+|.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            4689999999999999  999999999999999999975    3689999999999999999999999885

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.74  E-value=6e-19  Score=130.95  Aligned_cols=67  Identities=22%  Similarity=0.410  Sum_probs=59.8

Q ss_pred             CCccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccc
Q 021128           24 GKSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGL   95 (317)
Q Consensus        24 ~~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~   95 (317)
                      ..++|+||||+++  |+.++||+|||+||+++|||++++    .++|++|++||++|+|+.+|.. |.||..++
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~~   78 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLR-MNLGGTGF   78 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHT-TCCSSCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHH-HhcCCccC
Confidence            3689999999999  999999999999999999999864    3789999999999999999988 56877653

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.73  E-value=1.3e-19  Score=153.19  Aligned_cols=66  Identities=21%  Similarity=0.399  Sum_probs=58.8

Q ss_pred             CCCccchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCc
Q 021128           23 AGKSYYEVLQVPRGAS--DEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGE   92 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as--~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~   92 (317)
                      ...|||++|||+++|+  .+|||+|||++|+++|||+++++    ++|++|++||++|+||.+|+.||+||.
T Consensus         9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~----e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E            9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC----TTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH----HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            3579999999999999  69999999999999999998753    689999999999999999999999996

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.73  E-value=9.2e-19  Score=132.41  Aligned_cols=66  Identities=27%  Similarity=0.346  Sum_probs=59.1

Q ss_pred             cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhHhhhCCccccccc
Q 021128           22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSETRNIY   87 (317)
Q Consensus        22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~Y   87 (317)
                      ....++|+||||+++||.+|||+|||+||++||||+++++ +.|+++|++|++||++|+|...|..+
T Consensus        13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~   79 (88)
T 1iur_A           13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQN   79 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            3457899999999999999999999999999999999876 35889999999999999998887443

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.72  E-value=2.6e-18  Score=146.18  Aligned_cols=67  Identities=30%  Similarity=0.536  Sum_probs=61.1

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH---HHHHHHHHHHhHhhhCCccccccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEE---ANKRFAEINNAYEVLSDSETRNIY   87 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~---~~~~f~~i~~Ay~~L~d~~~r~~Y   87 (317)
                      .+...|||++|||+++|+.+|||+|||++++++|||++++...   |+++|++|++||++|+|+.+|+.|
T Consensus       113 l~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          113 LWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             SCTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             hcCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            3444799999999999999999999999999999999976542   789999999999999999999987

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.72  E-value=2.3e-18  Score=130.72  Aligned_cols=57  Identities=30%  Similarity=0.501  Sum_probs=52.3

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHhHhhhCC
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE---EANKRFAEINNAYEVLSD   80 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~f~~i~~Ay~~L~d   80 (317)
                      +.++|++|||+++||.+|||+|||++|+++|||+|++++   .|+++|++|++||++|.+
T Consensus        32 ~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             TCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            369999999999999999999999999999999998654   378999999999999975

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.69  E-value=3e-18  Score=176.96  Aligned_cols=78  Identities=46%  Similarity=0.792  Sum_probs=40.9

Q ss_pred             ccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccccc
Q 021128           21 VIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQH   98 (317)
Q Consensus        21 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~   98 (317)
                      ...+.|||++|||+++||.+|||+|||+||++||||++++++++.++|++|++||++|+||.+|+.||+||++++...
T Consensus        17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~   94 (780)
T 3apo_A           17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN   94 (780)
T ss_dssp             ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence            445789999999999999999999999999999999998777789999999999999999999999999999887653

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.68  E-value=1.1e-17  Score=130.91  Aligned_cols=63  Identities=21%  Similarity=0.353  Sum_probs=54.8

Q ss_pred             hccCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---ch----HHHHHHHHHHHhHhhhCCccc
Q 021128           20 NVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQG---NE----EANKRFAEINNAYEVLSDSET   83 (317)
Q Consensus        20 ~~~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~---~~----~~~~~f~~i~~Ay~~L~d~~~   83 (317)
                      ..+.+.|||++|+++. ||.+|||+|||++|+++|||++++   ++    .|+++|++|++||++|+|+..
T Consensus        36 ~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~  105 (106)
T 3ag7_A           36 ILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP  105 (106)
T ss_dssp             TSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence            4455789999999996 999999999999999999999863   11    378999999999999999863

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.67  E-value=1.2e-17  Score=141.78  Aligned_cols=67  Identities=24%  Similarity=0.390  Sum_probs=61.1

Q ss_pred             CccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHhHhhhCCccccccccccC
Q 021128           25 KSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDTYG   91 (317)
Q Consensus        25 ~~~Y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~-----~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G   91 (317)
                      .|||++|||+++|  |.++||+|||+|+++||||++++.+     .|.++|+.|++||++|+||.+|+.||...
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            3899999999999  9999999999999999999998653     25689999999999999999999999754

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.67  E-value=2.3e-17  Score=144.06  Aligned_cols=68  Identities=21%  Similarity=0.379  Sum_probs=61.0

Q ss_pred             cCCCccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHhHhhhCCccccccccc
Q 021128           22 IAGKSYYEVLQVPRG--ASDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDT   89 (317)
Q Consensus        22 ~~~~~~Y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~-----~~~~~f~~i~~Ay~~L~d~~~r~~YD~   89 (317)
                      ....|||++|||+++  ++.++||+|||+|++++|||+++++.     .|.++|++|++||++|+||.+|+.||.
T Consensus        40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            346899999999996  79999999999999999999997642     256889999999999999999999995

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.65  E-value=3.9e-17  Score=118.72  Aligned_cols=60  Identities=23%  Similarity=0.361  Sum_probs=53.0

Q ss_pred             cCCCccchhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccc
Q 021128           22 IAGKSYYEVLQVPR-GASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRN   85 (317)
Q Consensus        22 ~~~~~~Y~iLgv~~-~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~   85 (317)
                      +...++|+||||++ +||.+|||+|||+|++++|||++++ +   +.|++|++||++|+|+..|+
T Consensus        11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~-~---~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A           11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS-P---FLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC-H---HHHHHHHHHHHHHHHHCCCC
T ss_pred             CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-H---HHHHHHHHHHHHHhhhhhcC
Confidence            33468999999999 7999999999999999999999753 2   69999999999999987764

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.63  E-value=5.7e-16  Score=121.85  Aligned_cols=62  Identities=19%  Similarity=0.286  Sum_probs=57.3

Q ss_pred             eCCCCeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCcccc
Q 021128          249 APHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEV  313 (317)
Q Consensus       249 ~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~  313 (317)
                      +||+.|+|+|+||+++++|||.||++|++++|+||||. +.|+++..+++  |+.++|+|+|+|.
T Consensus         2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~-~~v~ip~g~~~--G~~~rl~G~G~p~   63 (109)
T 3i38_A            2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPGSQA--GQRLRIKGKGLVS   63 (109)
T ss_dssp             --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTTCCT--TCEEEETTCSCBC
T ss_pred             CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEeeCCCcCc--CeEEEECCccCCC
Confidence            69999999999999999999999999999999999995 99999988876  6999999999996

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.62  E-value=8.1e-17  Score=137.74  Aligned_cols=68  Identities=25%  Similarity=0.483  Sum_probs=60.4

Q ss_pred             hccCCCccchhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcccccccccc
Q 021128           20 NVIAGKSYYEVL------QVPR-GASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTY   90 (317)
Q Consensus        20 ~~~~~~~~Y~iL------gv~~-~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~   90 (317)
                      ......|||++|      |+++ +||.++||+|||+|++++|||++++   +.++|++|++||++|+||.+|+.||..
T Consensus         6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~   80 (181)
T 3uo3_A            6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLK   80 (181)
T ss_dssp             -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            344568999999      4665 9999999999999999999999986   568899999999999999999999983

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.2e-14  Score=116.40  Aligned_cols=60  Identities=20%  Similarity=0.375  Sum_probs=54.0

Q ss_pred             CeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeC--CcccCCCCcEEEecCCccccc
Q 021128          253 RFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK--VSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       253 ~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~--~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      .|+|+|+||+++++|+|++|++|++++|+||||+.+.|+++  +|+++  |+.++|+|+|+|..
T Consensus         1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~--G~~~rl~G~Gmp~~   62 (121)
T 1xao_A            1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAP--GMRKVIEGKGMPIP   62 (121)
T ss_dssp             CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCT--TCEEEETTCSCC--
T ss_pred             CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCC--CcEEEECCCCCCCC
Confidence            49999999999999999999999999999999998999987  45775  79999999999964

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.11  E-value=6.7e-11  Score=111.71  Aligned_cols=68  Identities=46%  Similarity=0.758  Sum_probs=58.2

Q ss_pred             cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhHhhhCCccccccccc
Q 021128           22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN---EEANKRFAEINNAYEVLSDSETRNIYDT   89 (317)
Q Consensus        22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~YD~   89 (317)
                      ....++|.+||+.++++.++|+++|+++++++|||+.+.+   ..++++|++|++||++|+||++|..||+
T Consensus       379 ~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             ccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            4467999999999999999999999999999999999865   3588999999999999999999999996

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.08  E-value=2.4e-10  Score=89.61  Aligned_cols=75  Identities=17%  Similarity=0.184  Sum_probs=62.9

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|++++++|||.||+.|++++|..-                                               .. .+
T Consensus         9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl-----------------------------------------------dG-~~   40 (109)
T 3i38_A            9 IVGHNLEIVLPLAPWEAALGAKVTVPTL-----------------------------------------------KE-SI   40 (109)
T ss_dssp             EETTEEEEEEEECHHHHHHCEEEEECCS-----------------------------------------------SS-CE
T ss_pred             EECCEEEEEEEcCHHHHhCCCEEEEEcC-----------------------------------------------CC-CE
Confidence            4689999999999999999998777321                                               11 47


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCee
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFR  255 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~  255 (317)
                      +|.||+|+++|++++++|+|.... +..|||||+++|.-.+...
T Consensus        41 ~v~ip~g~~~G~~~rl~G~G~p~~-~~~GDL~v~~~V~~P~~Ls   83 (109)
T 3i38_A           41 LLTVPPGSQAGQRLRIKGKGLVSK-THTGDLFAVIKIVMPTKPD   83 (109)
T ss_dssp             EEEECTTCCTTCEEEETTCSCBCS-SCBCCEEEEEEECCCSSCC
T ss_pred             EEeeCCCcCcCeEEEECCccCCCC-CCCcCEEEEEEEECCCCCC
Confidence            899999999999999999999864 4789999999998766544

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=2.2e-11  Score=94.76  Aligned_cols=79  Identities=14%  Similarity=0.154  Sum_probs=59.9

Q ss_pred             CCceEEeecccHHHHhcCceeEEEeeee-eecCCCCc-----------cccCccceEEEEEecCceeEEEe---------
Q 021128          134 GDDVIVELDATLEDLYMGGSLKVWREKN-VIKPAPGK-----------RRCNCRNEVYHKQIGPGMFQQMT---------  192 (317)
Q Consensus       134 g~di~~~l~vtlee~~~G~~~~v~~~r~-v~~~c~g~-----------~~C~g~G~~~~~~~~~g~~~~~~---------  192 (317)
                      |.|+.++|.|||||||+|+++++.+.+. .|..|.|+           +.|+|.|.+...+ ++  +++..         
T Consensus         1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~-G~--~~~~~~C~~C~G~G   77 (104)
T 2ctt_A            1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT-GP--FVMRSTCRRCGGRG   77 (104)
T ss_dssp             CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE-TT--EEEEEECSSSSSSS
T ss_pred             CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe-CC--EEEEEECCcCCCcc
Confidence            4578899999999999999999998875 57788774           4578888765443 43  33221         


Q ss_pred             ---eeccccCCCceEEeeCEEEEEEe
Q 021128          193 ---EQVCDQCQNVKYEREGYFVTVDI  215 (317)
Q Consensus       193 ---~~~C~~C~G~g~~~~~~~~~V~I  215 (317)
                         +++|+.|+|.|++.++++|+|++
T Consensus        78 ~~i~~~C~~C~G~G~v~~~k~l~V~~  103 (104)
T 2ctt_A           78 SIIISPCVVCRGAGQAKQKKRSGPSS  103 (104)
T ss_dssp             EECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred             eECCCcCCCCCCeeEEEEEEEEEEEc
Confidence               56899999999888888777654

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.01  E-value=9.5e-10  Score=87.79  Aligned_cols=80  Identities=23%  Similarity=0.315  Sum_probs=62.8

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+++++.|||.||+.|+++.|..-                                               ....+
T Consensus         4 R~G~DL~~~~~Isl~eAllG~~i~v~tl-----------------------------------------------dG~~~   36 (121)
T 1xao_A            4 RDGDDLVYEAEIDLLTAIAGGEFALEHV-----------------------------------------------SGDWL   36 (121)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECT-----------------------------------------------TSCEE
T ss_pred             EECCeEEEEEEcCHHHHhCCCEEEEecC-----------------------------------------------CCCEE
Confidence            4689999999999999999998777321                                               23458


Q ss_pred             EEEecCC--CCCCCEEEEcccCCCCCCC-CCccEEEEEEEeCCCC--eeEeC
Q 021128          212 TVDIEKG--MQDGQEVVFYEDGEPKIDG-EPGDLKFRIRTAPHDR--FRREG  258 (317)
Q Consensus       212 ~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~GDL~v~i~v~~h~~--F~R~G  258 (317)
                      +|.||+|  +++|++++++|+|....++ ..|||||++.|.-...  +..+.
T Consensus        37 ~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q   88 (121)
T 1xao_A           37 KVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEEN   88 (121)
T ss_dssp             EEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHH
T ss_pred             EEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHH
Confidence            8999999  9999999999999886543 5799999999997665  54433

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.86  E-value=1.8e-09  Score=76.26  Aligned_cols=52  Identities=13%  Similarity=0.103  Sum_probs=45.5

Q ss_pred             CccchhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCC
Q 021128           25 KSYYEVLQVPRG---ASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSD   80 (317)
Q Consensus        25 ~~~Y~iLgv~~~---as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d   80 (317)
                      .+-|.||||+++   ++.++|++|||+|....|||+..+.    .....|++|++.|..
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~----yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF----YLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHHHH
Confidence            356899999999   9999999999999999999998654    467789999999864

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=98.69  E-value=4.1e-08  Score=83.71  Aligned_cols=76  Identities=21%  Similarity=0.277  Sum_probs=62.9

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|++++++|||.||+.|++++|..-                                               ....+
T Consensus        90 R~G~DL~~~~~Isl~eAllG~~i~v~tl-----------------------------------------------dG~~~  122 (181)
T 3agx_A           90 RDGSDVIYPARISLREALCGCTVNVPTL-----------------------------------------------DGRTI  122 (181)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECT-----------------------------------------------TSCEE
T ss_pred             eeCCcEEEEEEcCHHHHhCCCEEEeECC-----------------------------------------------CCCEE
Confidence            4689999999999999999998877321                                               12368


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC--CCCccEEEEEEEeCCCCe
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID--GEPGDLKFRIRTAPHDRF  254 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~--~~~GDL~v~i~v~~h~~F  254 (317)
                      +|.||+|+++|++++++|+|....+  +..|||||++.|.-...+
T Consensus       123 ~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~l  167 (181)
T 3agx_A          123 PVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERI  167 (181)
T ss_dssp             EEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCC
T ss_pred             EEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCC
Confidence            8999999999999999999987543  457999999999866544

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=98.66  E-value=6.2e-08  Score=82.52  Aligned_cols=76  Identities=14%  Similarity=0.186  Sum_probs=62.6

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +.|.|++++++|||.||+.|++++|..-                                               ....+
T Consensus        90 R~G~DL~~~~~Isl~eAllG~~i~v~tl-----------------------------------------------dG~~v  122 (180)
T 2q2g_A           90 RDDCHLIMKVTIPLVRALTGFTCPVTTL-----------------------------------------------DNRNL  122 (180)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECT-----------------------------------------------TCCEE
T ss_pred             EcCCEEEEEEEcCHHHHhCCCEEEeeCC-----------------------------------------------CCCEE
Confidence            4689999999999999999998877321                                               12268


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC--CCCccEEEEEEEeCCCCe
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID--GEPGDLKFRIRTAPHDRF  254 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~--~~~GDL~v~i~v~~h~~F  254 (317)
                      +|.||+|+++|++++++|+|....+  +..|||||+++|.-...+
T Consensus       123 ~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~L  167 (180)
T 2q2g_A          123 QIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSL  167 (180)
T ss_dssp             EEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCC
T ss_pred             EEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCC
Confidence            8999999999999999999987543  457999999999866543

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=98.65  E-value=4.9e-08  Score=82.42  Aligned_cols=76  Identities=18%  Similarity=0.272  Sum_probs=62.6

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +.|.|++++++|||.||+.|++++|..-                                               ....+
T Consensus        84 R~G~DL~~~~~Isl~eAllG~~~~v~tl-----------------------------------------------dG~~~  116 (170)
T 1c3g_A           84 RDGDDLIYTLPLSFKESLLGFSKTIQTI-----------------------------------------------DGRTL  116 (170)
T ss_dssp             EETTEEEEEECCBHHHHHHCEEEEEECS-----------------------------------------------SSCEE
T ss_pred             EeCCcEeEEEEcCHHHHhCCCeEEeeCC-----------------------------------------------CCCEE
Confidence            4689999999999999999998877421                                               22358


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCC--CCCccEEEEEEEeCCCCe
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKID--GEPGDLKFRIRTAPHDRF  254 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~--~~~GDL~v~i~v~~h~~F  254 (317)
                      +|.||+|+++|++++++|+|....+  +..|||||++.|.-.+.+
T Consensus       117 ~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~L  161 (170)
T 1c3g_A          117 PLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISL  161 (170)
T ss_dssp             EEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSC
T ss_pred             EEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCC
Confidence            8999999999999999999987543  356999999999866543

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=98.64  E-value=3.9e-08  Score=87.97  Aligned_cols=81  Identities=22%  Similarity=0.311  Sum_probs=62.4

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|++++++|||.||+.|.+++|..-                                               ....+
T Consensus       159 R~G~DL~~~~~Isl~eAllG~~i~v~tl-----------------------------------------------dG~~~  191 (248)
T 1nlt_A          159 RDGDDLVYEAEIDLLTAIAGGEFALEHV-----------------------------------------------SGDWL  191 (248)
T ss_dssp             EETTEEEEEEEEEHHHHHHCBCCEEECS-----------------------------------------------SSCEE
T ss_pred             eeCCEEEEEEEeCHHHHhcCCEEEEeCC-----------------------------------------------CCCEE
Confidence            5689999999999999999998888421                                               23468


Q ss_pred             EEEecCC--CCCCCEEEEcccCCCCCCC-CCccEEEEEEEeCCCC--eeEeCC
Q 021128          212 TVDIEKG--MQDGQEVVFYEDGEPKIDG-EPGDLKFRIRTAPHDR--FRREGN  259 (317)
Q Consensus       212 ~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~GDL~v~i~v~~h~~--F~R~G~  259 (317)
                      +|.||+|  +++|++++++|+|....+. ..|||||++.|.-...  +..+..
T Consensus       192 ~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~  244 (248)
T 1nlt_A          192 KVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENL  244 (248)
T ss_dssp             ECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC---------
T ss_pred             EEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHH
Confidence            8999999  9999999999999875433 5699999999996654  544433

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=98.42  E-value=3.1e-07  Score=85.32  Aligned_cols=75  Identities=17%  Similarity=0.184  Sum_probs=61.8

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +.|.|+.++++|+|.||+.|++++|..-                                               .. .+
T Consensus       229 R~G~DL~~~~~Isl~eAllG~~v~VptL-----------------------------------------------dG-~v  260 (329)
T 3lz8_A          229 IVGHNLEIVLPLAPWEAALGAKVTVPTL-----------------------------------------------KE-SI  260 (329)
T ss_dssp             EETTEEEEEEEECHHHHHHCEEEEECCS-----------------------------------------------SS-CE
T ss_pred             EcCCcEEEEEECCHHHHcCCCeEEEECC-----------------------------------------------CC-CE
Confidence            4689999999999999999998877321                                               12 26


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCCCee
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFR  255 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~~F~  255 (317)
                      +|+||+|+++|++++|+|+|-... +..|||||++.|.-.+...
T Consensus       261 ~l~ip~gt~~g~~~rl~G~GmP~~-~~rGDL~v~~~V~~P~~l~  303 (329)
T 3lz8_A          261 LLTVPPGSQAGQRLRIKGKGLVSK-THTGDLFAVIKIVMPTKPD  303 (329)
T ss_dssp             EEEECTTCCTTCEEEETTCSCBCS-SCBCCEEEEEEECCCSSCC
T ss_pred             EEEECCCCCCCCEEEEcCCCCCCC-CCCCCEEEEEEEECCCCCC
Confidence            899999999999999999998755 4679999999998665443

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=96.46  E-value=0.0015  Score=47.36  Aligned_cols=50  Identities=22%  Similarity=0.381  Sum_probs=27.8

Q ss_pred             CceeEEEeeee-eecCCCCc-----------cccCccceEEEEEecCceeEEEeeeccccCCCceEE
Q 021128          151 GGSLKVWREKN-VIKPAPGK-----------RRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYE  205 (317)
Q Consensus       151 G~~~~v~~~r~-v~~~c~g~-----------~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~  205 (317)
                      |++++|.+.+. .|..|.|+           +.|+|.|.++..+   |+++  ....|+.|+|.|.+
T Consensus         1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~--~~~~C~~C~G~G~~   62 (79)
T 1exk_A            1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ---GFFA--VQQTCPHCQGRGTL   62 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE---TTEE--EEEECTTTTTSSEE
T ss_pred             CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc---CCCE--EeeECcCCCCccEE
Confidence            34445555553 46667654           4588888876544   4443  23345555555543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=92.10  E-value=0.14  Score=51.57  Aligned_cols=53  Identities=17%  Similarity=0.139  Sum_probs=40.8

Q ss_pred             HhhhccCCCccchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhh
Q 021128           17 YALNVIAGKSYYEVLQVPRGASD--EQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEV   77 (317)
Q Consensus        17 ~~~~~~~~~~~Y~iLgv~~~as~--~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~   77 (317)
                      ..+.....+|||.+||++.++..  .+|++|||++|+..+++        .+++..|..|+.|
T Consensus       621 l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          621 LDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV  675 (681)
T ss_dssp             HHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred             HHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence            34445667789999999777665  77999999999975544        3688888888875

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=89.64  E-value=0.12  Score=34.38  Aligned_cols=25  Identities=16%  Similarity=0.311  Sum_probs=18.4

Q ss_pred             ccCccceEEEEEecCceeEEEeeeccccCCCceEEeeC
Q 021128          171 RCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREG  208 (317)
Q Consensus       171 ~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~  208 (317)
                      .|+|+|.++             .++|+.|+|.|++.+.
T Consensus        14 ~C~GsG~~i-------------~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A           14 NCNGSGREE-------------PEPCPKCLGKGVILTA   38 (53)
T ss_dssp             TTTTSCEET-------------TEECTTTTTSSEEECH
T ss_pred             CCcccccCC-------------CCcCCCCCCcEEEEEE
Confidence            477777643             4689999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	317
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	6e-24
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	2e-20
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	6e-20
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	6e-20
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	5e-17
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	4e-16
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-15
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-15
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	2e-09
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	8e-09
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	2e-08
d1c3ga2	90	b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba	2e-07

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 90.8 bits (225), Expect = 6e-24
 Identities = 38/75 (50%), Positives = 55/75 (73%)

Query: 23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
          A + YYE+L V + A + +I++AY++LA+KYHPD+NQG++EA  +F EI  AYEVL+DS+
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 83 TRNIYDTYGEEGLKQ 97
           R  YD YG    +Q
Sbjct: 61 KRAAYDQYGHAAFEQ 75

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.7 bits (204), Expect = 2e-20
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 11 LLCALCYALNVIAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN---EEANKR 67
          LL  +   L   AG++ ++ + +    + EQ+K+ YRK  L  HPDK  G    + A   
Sbjct: 21 LLSTMHTVL--WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMI 78

Query: 68 FAEINNAYEVLSDSETRNIY 87
          F E+N+A+    +   + +Y
Sbjct: 79 FMELNDAWSEFENQGQKPLY 98

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.9 bits (199), Expect = 6e-20
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKR------FAEINNAYEVL 78
          K +Y +L     A+   +K+ Y+KL L YHPDK   +  A         F EI+ A+++L
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75

Query: 79 SDSETRNIYDTYG 91
           + ET+  YD   
Sbjct: 76 GNEETKKKYDLQR 88

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 6e-20
 Identities = 45/73 (61%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSET 83
          GK YY+ L + RGASDE+IKRAYR+ AL+YHPDKN+    A ++F EI  AY+VLSD   
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRK 60

Query: 84 RNIYDTYGEEGLK 96
          R I+D YGEEGLK
Sbjct: 61 REIFDRYGEEGLK 73

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 72.4 bits (177), Expect = 5e-17
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 27 YYEVLQVPRGAS--DEQIKRAYRKLALKYHPDKNQGNEEANK-----RFAEINNAYEVLS 79
          Y+ +  +P       + +   ++ L  +YHPDK     +A +     + A IN A++ L 
Sbjct: 3  YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62

Query: 80 DSETRNIYD 88
              R  Y 
Sbjct: 63 HPLMRAEYL 71

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 4e-16
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN-EEANKRFAEINNAYEVLSDSET 83
          K    V++      + + K+  R+L LK+HPDKN  N + AN+ F  + N    L     
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK--- 72

Query: 84 RNIYDTYGEEGLKQ 97
          +   D   +   ++
Sbjct: 73 QAFLDQNADRASRR 86

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 69.8 bits (170), Expect = 1e-15
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 25  KSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
               ++L + R A  +   +++AY K   ++HPDK        ++  ++N  Y+ + D  
Sbjct: 8   LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGV 63

Query: 83  TRNIYDTYGEEGLKQHAAGGGRGGGM----GVNIQDIFSS--FFGG 122
                  +G           G           N +++F S      
Sbjct: 64  KYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPSS 109

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 68.5 bits (167), Expect = 1e-15
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 25 KSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSE 82
          +   E+L++PR       ++++AY++ +L  HPDK      ++    E+N+ +       
Sbjct: 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG----SHALMQELNSLWGTFKTEV 66

Query: 83 TRNIYDTYG 91
               +  G
Sbjct: 67 YNLRMNLGG 75

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 12/56 (21%), Positives = 25/56 (44%)

Query: 254 FRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKK 309
           F+R+G++L     + L+ A+ G E  +EH+    + +       +  G    +  K
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGK 57

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.3 bits (117), Expect = 8e-09
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 198 QCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPH 251
           + +  K       + V +E GM+DGQ +VF  + +   D  PGD+ F +   PH
Sbjct: 20  KGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPH 73

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 40/118 (33%)

Query: 135 DDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQ 194
           + V V L  +LEDL++G                                           
Sbjct: 1   ETVQVNLPVSLEDLFVGKKKSF-------------------------------------- 22

Query: 195 VCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKI-DGEPGDLKFRIRTAPH 251
                +      E   + + ++ G + G ++ +   G+     G    L+F I+   H
Sbjct: 23  -KIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSH 79

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 13/46 (28%), Positives = 28/46 (60%)

Query: 254 FRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMC 299
           F+R+G++L  T+ ++  ++L+GF KTI+ +D   + +S    +   
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPS 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.92
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.83
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.82
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.77
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.76
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.72
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.71
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.7
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.68
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.58
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	99.51
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.0
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	98.9
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	98.26
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	96.91
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	96.67
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	96.21

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.1e-26  Score=167.91  Aligned_cols=74  Identities=50%  Similarity=0.969  Sum_probs=69.7

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccccc
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLK   96 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~   96 (317)
                      +.+|||+||||+++||.+|||+|||++++++|||++++++.+++.|++|++||+||+||.+|+.||+||.+++.
T Consensus         1 ak~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~e   74 (75)
T d1xbla_           1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (75)
T ss_dssp             CCCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSCC
T ss_pred             CCCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccccC
Confidence            36899999999999999999999999999999999988777889999999999999999999999999988764

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-24  Score=158.54  Aligned_cols=73  Identities=62%  Similarity=1.056  Sum_probs=68.4

Q ss_pred             CCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCcccccc
Q 021128           24 GKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEGLKQ   97 (317)
Q Consensus        24 ~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   97 (317)
                      .+|||+||||+++||.+||++||+++++++|||++..+. +.++|+.|++||+||+||.+|+.||+||++++++
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~-~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~g   74 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchh-HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcC
Confidence            589999999999999999999999999999999998654 7889999999999999999999999999998753

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=7.1e-22  Score=149.72  Aligned_cols=69  Identities=36%  Similarity=0.665  Sum_probs=63.2

Q ss_pred             CCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHhHhhhCCccccccccccC
Q 021128           23 AGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGN------EEANKRFAEINNAYEVLSDSETRNIYDTYG   91 (317)
Q Consensus        23 ~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~------~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G   91 (317)
                      ..+|||+||||+++|+.+|||+||++|+++||||+++.+      .+++++|++|++||++|+||.+|+.||...
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            468999999999999999999999999999999998754      347899999999999999999999999754

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.82  E-value=6.7e-22  Score=155.37  Aligned_cols=67  Identities=21%  Similarity=0.374  Sum_probs=61.7

Q ss_pred             CCccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128           24 GKSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTYGEEG   94 (317)
Q Consensus        24 ~~~~Y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~   94 (317)
                      ..|||+||||+++|  +.++||+|||+||+++|||++++.    ++|++|++||+||+|+.+|+.||.+|...
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~----e~F~~I~~AY~vLsd~~kR~~YD~~~~~~   75 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT----TTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH----HHHHHHHHHHHHhCCHHHHHHHhccCCCC
Confidence            46899999999999  788999999999999999999754    57999999999999999999999988754

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=6.8e-19  Score=127.27  Aligned_cols=73  Identities=36%  Similarity=0.629  Sum_probs=67.5

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      +++.|++++++|||+|||+|+++++.+.                                                .+.+
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~------------------------------------------------~~~~   33 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALN------------------------------------------------RKIL   33 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEE------------------------------------------------EEEE
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeec------------------------------------------------CccE
Confidence            5789999999999999999999988543                                                4579


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCCCCCCccEEEEEEEeCCC
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHD  252 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDL~v~i~v~~h~  252 (317)
                      +|+||+|+++|++|+|+|+|++.+++.+|||+|+|+++||+
T Consensus        34 ~i~Ip~G~~~G~~ir~~g~G~~~~~~~~GDl~v~i~~~pHk   74 (74)
T d1nlta1          34 EVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHK   74 (74)
T ss_dssp             EEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCS
T ss_pred             EEEecccccCCeEEEecCCcCCCCCCCCCCEEEEEEecCCC
Confidence            99999999999999999999999999999999999999995

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.1e-18  Score=128.07  Aligned_cols=79  Identities=22%  Similarity=0.401  Sum_probs=67.9

Q ss_pred             CceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEEEEE
Q 021128          135 DDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVD  214 (317)
Q Consensus       135 ~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~~V~  214 (317)
                      +++.++|+|||||+|+|+++++.+.|..                                    |.|.+   +.++++|.
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~------------------------------------~~g~~---~~~~~~v~   41 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG------------------------------------PHGAS---EKTQIDIQ   41 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEE------------------------------------TTTEE---EEEEEEEE
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceec------------------------------------ccCCC---ceEEEEEE
Confidence            4789999999999999999999876432                                    23322   45679999


Q ss_pred             ecCCCCCCCEEEEcccCCCCCC-CCCccEEEEEEEeCCC
Q 021128          215 IEKGMQDGQEVVFYEDGEPKID-GEPGDLKFRIRTAPHD  252 (317)
Q Consensus       215 Ip~G~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~~h~  252 (317)
                      ||||+++|++|+|+|+|++.++ +.+|||+|+|++++||
T Consensus        42 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~~HP   80 (80)
T d1c3ga1          42 LKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHP   80 (80)
T ss_dssp             CCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCS
T ss_pred             ECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeCCCC
Confidence            9999999999999999999876 5789999999999997

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.72  E-value=5.8e-19  Score=128.63  Aligned_cols=63  Identities=21%  Similarity=0.347  Sum_probs=57.9

Q ss_pred             CCccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhHhhhCCcccccccccc
Q 021128           24 GKSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSETRNIYDTY   90 (317)
Q Consensus        24 ~~~~Y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~   90 (317)
                      ..+||+||||++++  +.++||+|||+++++||||+++++    ++|++|++||++|+|+.+|..||.-
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~----e~~~~in~Ay~~L~d~~~r~~~~~~   74 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH----ALMQELNSLWGTFKTEVYNLRMNLG   74 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCH----HHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCH----HHHHHHHHHHHHHCCHHHHHHHccC
Confidence            46899999999998  999999999999999999998643    6899999999999999999999963

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.6e-18  Score=126.01  Aligned_cols=65  Identities=25%  Similarity=0.434  Sum_probs=57.2

Q ss_pred             CccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHhHhhhCCccccccccc
Q 021128           25 KSYYEVLQVPRGA--SDEQIKRAYRKLALKYHPDKNQGNE-----EANKRFAEINNAYEVLSDSETRNIYDT   89 (317)
Q Consensus        25 ~~~Y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~-----~~~~~f~~i~~Ay~~L~d~~~r~~YD~   89 (317)
                      .|||++|||++++  +.+|||+|||++++++|||+..+..     .+.+.|+.|++||++|+||.+|+.|+.
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3899999999954  5899999999999999999975432     367889999999999999999999973

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.5e-18  Score=127.92  Aligned_cols=67  Identities=28%  Similarity=0.436  Sum_probs=59.6

Q ss_pred             CccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHhHhhhCCccccccccccCccc
Q 021128           25 KSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE-EANKRFAEINNAYEVLSDSETRNIYDTYGEEG   94 (317)
Q Consensus        25 ~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~   94 (317)
                      +++|+||+|+.+||.+|||+|||+|+++||||+++++. .|+++|++|++||++|+   ++..||++....
T Consensus        16 ~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~~~   83 (88)
T d1iura_          16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAFLDQNADRA   83 (88)
T ss_dssp             HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHH---HHTTCSSSSSCS
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH---HHHHhhccchHh
Confidence            69999999999999999999999999999999998764 58999999999999997   567777766543

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=5.8e-18  Score=128.69  Aligned_cols=66  Identities=30%  Similarity=0.535  Sum_probs=60.2

Q ss_pred             cCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHhHhhhCCccccccc
Q 021128           22 IAGKSYYEVLQVPRGASDEQIKRAYRKLALKYHPDKNQGNE---EANKRFAEINNAYEVLSDSETRNIY   87 (317)
Q Consensus        22 ~~~~~~Y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~f~~i~~Ay~~L~d~~~r~~Y   87 (317)
                      +.+.+.|++||++..+|.++||+|||++++.+|||+++++.   .|++.|+.|++||++|+||.+|+.|
T Consensus        30 ~~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          30 WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CTTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             CCcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            44668899999999999999999999999999999987653   3789999999999999999999988

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.4e-15  Score=113.74  Aligned_cols=60  Identities=22%  Similarity=0.432  Sum_probs=56.9

Q ss_pred             CeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128          253 RFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       253 ~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      .|+|+|+||+++++||++||++|++++|+|+||+.+.|+++..+++  |+.++|+|||+|..
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~--g~~~~i~g~G~p~~   60 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQP--SQTSTYPGQGMPTP   60 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCT--TCEEECTTCSCBCS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceeccccccccc--ccccccCCCCCCcC
Confidence            3999999999999999999999999999999999999999998886  69999999999975

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1e-14  Score=106.57  Aligned_cols=61  Identities=21%  Similarity=0.379  Sum_probs=54.4

Q ss_pred             CeeEeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeC--CcccCCCCcEEEecCCcccccc
Q 021128          253 RFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTK--VSMNMCFGTSFAMTKKRIEVLK  315 (317)
Q Consensus       253 ~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~--~v~~~~~~~~~~~~~k~~~~~~  315 (317)
                      .|+|+|+||+++++|++.||++|++++|+|+||+.+.|+++  .+++  .|+.++|+|||+|...
T Consensus         1 tF~R~G~dL~~~~~I~~~eal~G~~~~i~~~dg~~~~i~i~~~~~~~--~g~~~~i~g~G~p~~~   63 (80)
T d1nlta2           1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIA--PGMRKVIEGKGMPIPK   63 (80)
T ss_dssp             SCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCS--TTCEEEETTCSCBCSS
T ss_pred             CcEEeCCEEEEEEEeCHHHHhCCCEEEEEecCcceEEEEeCCCCCcC--CCCEEEecCCCCCCCC
Confidence            49999999999999999999999999999999998887776  3455  4799999999999753

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=4e-10  Score=83.45  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=63.1

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+.+.++|||.||+.|+++++..-                                               ..+.+
T Consensus         4 R~G~DL~~~~~I~~~eal~G~~~~i~~~-----------------------------------------------dG~~i   36 (90)
T d1c3ga2           4 RDGDDLIYTLPLSFKESLLGFSKTIQTI-----------------------------------------------DGRTL   36 (90)
T ss_dssp             EETTEEEEEECCBHHHHHHCEEEEEECS-----------------------------------------------SSCEE
T ss_pred             EeCCeEEEEEEeCHHHHhcCCeEEEecc-----------------------------------------------cccce
Confidence            4789999999999999999999888421                                               24578


Q ss_pred             EEEecCCCCCCCEEEEcccCCCCC--CCCCccEEEEEEEeCCCCe
Q 021128          212 TVDIEKGMQDGQEVVFYEDGEPKI--DGEPGDLKFRIRTAPHDRF  254 (317)
Q Consensus       212 ~V~Ip~G~~~G~~i~~~g~G~~~~--~~~~GDL~v~i~v~~h~~F  254 (317)
                      +|+||+|+++|++++++|+|....  .+..|||+|++.+.-...+
T Consensus        37 ~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~l   81 (90)
T d1c3ga2          37 PLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISL   81 (90)
T ss_dssp             EEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSC
T ss_pred             ecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCCC
Confidence            999999999999999999998643  3457999999999855433

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=1.4e-09  Score=78.56  Aligned_cols=71  Identities=25%  Similarity=0.404  Sum_probs=59.5

Q ss_pred             ccCCceEEeecccHHHHhcCceeEEEeeeeeecCCCCccccCccceEEEEEecCceeEEEeeeccccCCCceEEeeCEEE
Q 021128          132 VKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFV  211 (317)
Q Consensus       132 ~kg~di~~~l~vtlee~~~G~~~~v~~~r~v~~~c~g~~~C~g~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~~  211 (317)
                      ++|.|+.++++|+|.||+.|+++++...                                               ....+
T Consensus         4 R~G~dL~~~~~I~~~eal~G~~~~i~~~-----------------------------------------------dg~~~   36 (80)
T d1nlta2           4 RDGDDLVYEAEIDLLTAIAGGEFALEHV-----------------------------------------------SGDWL   36 (80)
T ss_dssp             EETTEEEEEEEEEHHHHHHCBCCEEECS-----------------------------------------------SSCEE
T ss_pred             EeCCEEEEEEEeCHHHHhCCCEEEEEec-----------------------------------------------CcceE
Confidence            4689999999999999999999888431                                               24467


Q ss_pred             EEEecCC--CCCCCEEEEcccCCCCCC-CCCccEEEEEEEe
Q 021128          212 TVDIEKG--MQDGQEVVFYEDGEPKID-GEPGDLKFRIRTA  249 (317)
Q Consensus       212 ~V~Ip~G--~~~G~~i~~~g~G~~~~~-~~~GDL~v~i~v~  249 (317)
                      +|.||++  +++|++++++|+|-...+ +..|||+|++++.
T Consensus        37 ~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~V~   77 (80)
T d1nlta2          37 KVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIK   77 (80)
T ss_dssp             ECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEE
T ss_pred             EEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEEEE
Confidence            7888877  999999999999986554 4679999999986

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=4.2e-07  Score=64.16  Aligned_cols=56  Identities=9%  Similarity=0.271  Sum_probs=48.5

Q ss_pred             EeCCcEEEEEecCHHHHhcCCEEEEecCCCCeEEEeeCCcccCCCCcEEEecCCccccc
Q 021128          256 REGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKVSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       256 R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~i~i~~~~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      |.|.|++++++|||.||++|+++.|.+ +.+.+.|.++.-+..  |+.|+++|+|-+.+
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~-~~~~~~i~Ip~G~~~--G~~ir~~g~G~~~~   57 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLAL-NRKILEVHVEPGMKD--GQRIVFKGEADQAP   57 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEE-EEEEEEEEECTTCCT--TCEEEETTCSCCCT
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceee-cCccEEEEecccccC--CeEEEecCCcCCCC
Confidence            689999999999999999999999986 556799999866653  79999999997653

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00023  Score=50.17  Aligned_cols=30  Identities=13%  Similarity=0.150  Sum_probs=20.3

Q ss_pred             CceeEEEeeee-eecCCCCc-----------cccCccceEEE
Q 021128          151 GGSLKVWREKN-VIKPAPGK-----------RRCNCRNEVYH  180 (317)
Q Consensus       151 G~~~~v~~~r~-v~~~c~g~-----------~~C~g~G~~~~  180 (317)
                      |++++|.+++. .|..|.|+           +.|+|.|++.+
T Consensus         1 G~~k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~   42 (79)
T d1exka_           1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQM   42 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEE
T ss_pred             CceEEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEE
Confidence            55667777765 57778764           45788887644

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.0015  Score=45.25  Aligned_cols=40  Identities=25%  Similarity=0.620  Sum_probs=23.0

Q ss_pred             eecCCCCc----------cccCccceEEE-EEecCceeEEEeeeccccCCCce
Q 021128          162 VIKPAPGK----------RRCNCRNEVYH-KQIGPGMFQQMTEQVCDQCQNVK  203 (317)
Q Consensus       162 v~~~c~g~----------~~C~g~G~~~~-~~~~~g~~~~~~~~~C~~C~G~g  203 (317)
                      +|..|.|+          +.|+|+|.+.. .+++++++ ++ ..+|+.|.|.|
T Consensus         4 ~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~-~~-~~~C~~C~G~G   54 (74)
T d1nlta3           4 LCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQ-RF-QTECDVCHGTG   54 (74)
T ss_dssp             ECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEE-EE-ECSCTTCSSSS
T ss_pred             CCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEE-EE-EEECccCccce
Confidence            56777665          46889998765 46666443 33 23444444443

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0036  Score=43.77  Aligned_cols=54  Identities=19%  Similarity=0.217  Sum_probs=41.2

Q ss_pred             CcEEEEEecCHHHHhcCCEEEEe----cCCCC----eEEEeeCCcccCCCCcEEEecCCccccc
Q 021128          259 NNLHTTVTVTLVQALVGFEKTIE----HLDEH----LVDISTKVSMNMCFGTSFAMTKKRIEVL  314 (317)
Q Consensus       259 ~DL~~~~~Isl~eAllG~~~~v~----tldG~----~i~i~~~~v~~~~~~~~~~~~~k~~~~~  314 (317)
                      +|+.+++.|||-||..|+++.|.    ..+|.    .+.|.++.-+.  .|+.|+++|+|-+.+
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~~~g~~~~~~~~v~Ip~G~~--~G~~i~~~g~G~~~~   62 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWK--AGTKITYKNQGDYNP   62 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCC--TTCEEEESSCSSBCS
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceecccCCCceEEEEEEECCCCC--CCcEEEECCccccCc
Confidence            57899999999999999977664    34553    46777764443  489999999996543