Citrus Sinensis ID: 021167

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
MYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQAG
cccccEEEEcccccHHHHHHHccccccccccHHHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHcccEEEEEEEccccccccccccEEEEEEEEcccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccEEcccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHc
cccccEEEEccccccHHHHcccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHccccEEEEEEccHHccccccccEEEEEEEEccccccccccccccccccccccccccccEEcccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHccccEccccccEEEEEcccEEEEcccccEEEEEcccccHHccccHHccEEEccHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHcc
mygahawllsppcqpytrqglqkqssdARAFSFLKILEliphtvkpphmLFVENVVGFETSDTHAKMIEILAnsdyltqefilsplqfgvpysrpryfclakrkplsfRCQLLNnqllrspspllgnddmtvitkhdqpddswdkllescdpverflefsnsgdqvntetgflstgtaavddfgaaeetvevdrcvsidhflvPLSLIERWGsamdivypdskrcccftksyYRYVKGTGsllatvqpknkgkasslkeqhlryftprevanlhsfpgdfqfphhlSLRQRYALLGNSLSIAVVAPLLQYLFAQAG
mygahawllsppcqPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQllrspspllGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLatvqpknkgkasslkEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQAG
MYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQAG
*****AWLL*******************RAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRS***LL****MTVI*********WDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATV**************HLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA***
MYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQAG
MYGAHAWLLSPPCQPY**********DARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQ**********KEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQAG
*YGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQA*
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MYGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQAG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query316 2.2.26 [Sep-21-2011]
O14717391 tRNA (cytosine(38)-C(5))- yes no 0.933 0.754 0.366 5e-46
Q7YS61391 tRNA (cytosine-5-)-methyl yes no 0.905 0.731 0.361 7e-46
Q4G073391 tRNA (cytosine(38)-C(5))- yes no 0.908 0.734 0.356 9e-45
O55055415 tRNA (cytosine(38)-C(5))- yes no 0.898 0.684 0.359 2e-43
Q54JH6379 DNA (cytosine-5)-methyltr yes no 0.879 0.733 0.331 2e-41
P40999330 tRNA (cytosine(38)-C(5))- yes no 0.784 0.751 0.320 1e-34
P25263420 Modification methylase Hg yes no 0.946 0.711 0.260 5e-07
P05102327 Modification methylase Hh N/A no 0.746 0.721 0.245 6e-07
P34879379 Modification methylase Ss yes no 0.335 0.279 0.275 6e-05
P24581313 Cytosine-specific methylt yes no 0.278 0.281 0.290 0.0002
>sp|O14717|TRDMT_HUMAN tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens GN=TRDMT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  185 bits (469), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/327 (36%), Positives = 182/327 (55%), Gaps = 32/327 (9%)

Query: 8   LLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKM 67
           L+SPPCQP+TR G Q   +D+R  SFL IL+++P   K P  + +ENV GFE S T   +
Sbjct: 74  LMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLL 133

Query: 68  IEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAK--RKPLSFRC---QLLNNQLLRS-- 120
           I+ + N  +  QEF+LSP   G+P SR RYF +AK   +PL F+     L+    + S  
Sbjct: 134 IQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIESVH 193

Query: 121 PSPLLGNDDMTVITKHDQPDDSWDKLLESC--DPVERFLEFSNSGDQVNTETGFLSTGTA 178
           P     + +  +  K+ +P+ S+D  ++    D +   LE +    + N +   LS    
Sbjct: 194 PQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHRKNQQDSDLS--VK 251

Query: 179 AVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKG 238
            + DF        ++    ++ +L+P   + R+   +DIV P  +R  CFTK Y  Y++G
Sbjct: 252 MLKDF--------LEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEG 303

Query: 239 TGSLLAT---VQPKNKGKA---SSLKEQ-------HLRYFTPREVANLHSFPGDFQFPHH 285
           TGS+L T   VQ +N  K+    S +EQ        LRYFTP+E+ANL  FP +F FP  
Sbjct: 304 TGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEK 363

Query: 286 LSLRQRYALLGNSLSIAVVAPLLQYLF 312
           ++++QRY LLGNSL++ VVA L++ L+
Sbjct: 364 ITVKQRYRLLGNSLNVHVVAKLIKILY 390
Specifically methylates cytosine 38 in the anticodon loop of tRNA(Asp).
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0EC: 4
>sp|Q7YS61|TRDMT_BOVIN tRNA (cytosine-5-)-methyltransferase OS=Bos taurus GN=TRDMT1 PE=2 SV=1 Back     alignment and function description
>sp|Q4G073|TRDMT_RAT tRNA (cytosine(38)-C(5))-methyltransferase OS=Rattus norvegicus GN=Trdmt1 PE=2 SV=1 Back     alignment and function description
>sp|O55055|TRDMT_MOUSE tRNA (cytosine(38)-C(5))-methyltransferase OS=Mus musculus GN=Trdmt1 PE=2 SV=2 Back     alignment and function description
>sp|Q54JH6|CMT1_DICDI DNA (cytosine-5)-methyltransferase OS=Dictyostelium discoideum GN=dnmA PE=1 SV=1 Back     alignment and function description
>sp|P40999|PMT1M_SCHPO tRNA (cytosine(38)-C(5))-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmt1 PE=1 SV=1 Back     alignment and function description
>sp|P25263|MTC1_HERAU Modification methylase HgiCI OS=Herpetosiphon aurantiacus GN=hgiCIM PE=3 SV=2 Back     alignment and function description
>sp|P05102|MTH1_HAEPH Modification methylase HhaI OS=Haemophilus parahaemolyticus GN=hhaIM PE=1 SV=1 Back     alignment and function description
>sp|P34879|MTS2_SHISO Modification methylase SsoII OS=Shigella sonnei GN=ssoIIM PE=3 SV=1 Back     alignment and function description
>sp|P24581|MTNX_NEILA Cytosine-specific methyltransferase NlaX OS=Neisseria lactamica GN=nlaXM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
359476106393 PREDICTED: tRNA (cytosine-5-)-methyltran 0.984 0.791 0.746 1e-130
224092438350 DNA methyltransferase [Populus trichocar 0.905 0.817 0.722 1e-125
296081999366 unnamed protein product [Vitis vinifera] 0.905 0.781 0.722 1e-124
297812763383 DNA methyltransferase-2 [Arabidopsis lyr 0.958 0.791 0.705 1e-120
18420929383 DNA methyltransferase-2 [Arabidopsis tha 0.962 0.793 0.707 1e-120
255548992404 DNA (cytosine-5)-methyltransferase, puta 0.939 0.735 0.689 1e-120
21553420383 DNA methyltransferase PMT1-like protein 0.962 0.793 0.704 1e-119
449441930385 PREDICTED: tRNA (cytosine(38)-C(5))-meth 0.971 0.797 0.675 1e-115
357445897378 tRNA (cytosine-5-)-methyltransferase [Me 0.981 0.820 0.659 1e-113
363814463385 uncharacterized protein LOC100792567 [Gl 0.981 0.805 0.667 1e-113
>gi|359476106|ref|XP_002282454.2| PREDICTED: tRNA (cytosine-5-)-methyltransferase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/315 (74%), Positives = 261/315 (82%), Gaps = 4/315 (1%)

Query: 2   YGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS 61
           Y AHAWLLSPPCQPYTRQGLQK S DARAFSFLKILELI HT+ PP MLFVENVVGFETS
Sbjct: 77  YRAHAWLLSPPCQPYTRQGLQKHSGDARAFSFLKILELIQHTLHPPLMLFVENVVGFETS 136

Query: 62  DTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSP 121
           DTH KMIEIL+ + ++TQEFILSP+QFGVPYSRPRYFCLAKRKPLSF  QL NNQLL +P
Sbjct: 137 DTHEKMIEILSKTGFVTQEFILSPIQFGVPYSRPRYFCLAKRKPLSFENQLFNNQLLSTP 196

Query: 122 SPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVD 181
           SPL G++D ++I +HDQ +  WDKLL+SC+PVERFLEF N+ + + TE+ +L T + + D
Sbjct: 197 SPLFGHEDDSLIDEHDQSEKIWDKLLQSCEPVERFLEFKNTINPLETESSYLDTLSVSTD 256

Query: 182 DFGAAEETVEVDR--CVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGT 239
             G  E   E DR    S D F VPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGT
Sbjct: 257 ASGELENN-ERDRSDSNSWDQFSVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGT 315

Query: 240 GSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSL 299
           GSLLAT Q K K KAS L+EQ LRYFTPREVANLHSFP DF FP H++LRQRYALLGNSL
Sbjct: 316 GSLLATGQSK-KDKASLLEEQCLRYFTPREVANLHSFPEDFHFPQHVNLRQRYALLGNSL 374

Query: 300 SIAVVAPLLQYLFAQ 314
           S+AVVAPLL YLF Q
Sbjct: 375 SVAVVAPLLTYLFTQ 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224092438|ref|XP_002309610.1| DNA methyltransferase [Populus trichocarpa] gi|222855586|gb|EEE93133.1| DNA methyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296081999|emb|CBI21004.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297812763|ref|XP_002874265.1| DNA methyltransferase-2 [Arabidopsis lyrata subsp. lyrata] gi|297320102|gb|EFH50524.1| DNA methyltransferase-2 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18420929|ref|NP_568474.1| DNA methyltransferase-2 [Arabidopsis thaliana] gi|332006070|gb|AED93453.1| DNA methyltransferase-2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255548992|ref|XP_002515552.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis] gi|223545496|gb|EEF47001.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|21553420|gb|AAM62513.1| DNA methyltransferase PMT1-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449441930|ref|XP_004138735.1| PREDICTED: tRNA (cytosine(38)-C(5))-methyltransferase-like [Cucumis sativus] gi|449514978|ref|XP_004164528.1| PREDICTED: tRNA (cytosine(38)-C(5))-methyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357445897|ref|XP_003593226.1| tRNA (cytosine-5-)-methyltransferase [Medicago truncatula] gi|355482274|gb|AES63477.1| tRNA (cytosine-5-)-methyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|363814463|ref|NP_001242866.1| uncharacterized protein LOC100792567 [Glycine max] gi|255640237|gb|ACU20409.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
TAIR|locus:2179469383 DNMT2 "DNA methyltransferase-2 0.962 0.793 0.710 2.2e-112
UNIPROTKB|Q7YS61391 TRDMT1 "tRNA (cytosine-5-)-met 0.927 0.749 0.388 9.1e-45
UNIPROTKB|O14717391 TRDMT1 "tRNA (cytosine(38)-C(5 0.933 0.754 0.382 9.1e-45
UNIPROTKB|E2RM86391 TRDMT1 "Uncharacterized protei 0.930 0.751 0.387 1.2e-44
ZFIN|ZDB-GENE-041008-138381 trdmt1 "tRNA aspartic acid met 0.901 0.748 0.370 1.7e-43
DICTYBASE|DDB_G0288047379 dnmA "DNA (cytosine-5-)-methyl 0.522 0.435 0.344 2.2e-42
MGI|MGI:1274787415 Trdmt1 "tRNA aspartic acid met 0.927 0.706 0.360 2.5e-42
RGD|1306292391 Trdmt1 "tRNA aspartic acid met 0.927 0.749 0.366 1.1e-41
FB|FBgn0028707345 Mt2 "Methyltransferase 2" [Dro 0.313 0.286 0.45 6.1e-40
POMBASE|SPBC19C2.02330 pmt1 "tRNA methyltransferase" 0.379 0.363 0.376 8.8e-34
TAIR|locus:2179469 DNMT2 "DNA methyltransferase-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 221/311 (71%), Positives = 243/311 (78%)

Query:     2 YGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS 61
             Y A AWLLSPPCQPYTRQGLQK S DARAFSFL+ILELIPHT KPP MLFVENVVGFETS
Sbjct:    78 YNADAWLLSPPCQPYTRQGLQKHSGDARAFSFLRILELIPHTTKPPQMLFVENVVGFETS 137

Query:    62 DTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSP 121
             DTH +MI  L   DY+TQEFILSPLQFGVPYSRPRYFCLAKRKPL F+ Q  NN+LL SP
Sbjct:   138 DTHMEMIGTLTKLDYVTQEFILSPLQFGVPYSRPRYFCLAKRKPLPFKSQHSNNKLLWSP 197

Query:   122 SPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVD 181
              PL G DD     K  Q ++  DKLLE C PVE+FLE +   D   +       G+   D
Sbjct:   198 DPLYGRDDQVEFGKC-QAEEGLDKLLEFCKPVEKFLELAAHVDGEPSSVDDSENGSK--D 254

Query:   182 DFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGS 241
               G   ++V  D   S+  +LVP+SLIERWG+AMDIVYPDSKRCCCFTKSYYRYVKGTGS
Sbjct:   255 CCGQEGDSVP-D---SVHQYLVPVSLIERWGNAMDIVYPDSKRCCCFTKSYYRYVKGTGS 310

Query:   242 LLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSI 301
             LLATVQPK KGK S LKEQ LRYFTPREVAN HSFP DF+FP H+SLRQRYA+LGNSLS+
Sbjct:   311 LLATVQPKIKGKESCLKEQRLRYFTPREVANFHSFPEDFEFPKHISLRQRYAMLGNSLSV 370

Query:   302 AVVAPLLQYLF 312
             AVVAPLL+YLF
Sbjct:   371 AVVAPLLRYLF 381
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006306 "DNA methylation" evidence=IEA;ISS
UNIPROTKB|Q7YS61 TRDMT1 "tRNA (cytosine-5-)-methyltransferase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O14717 TRDMT1 "tRNA (cytosine(38)-C(5))-methyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RM86 TRDMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041008-138 trdmt1 "tRNA aspartic acid methyltransferase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288047 dnmA "DNA (cytosine-5-)-methyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1274787 Trdmt1 "tRNA aspartic acid methyltransferase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306292 Trdmt1 "tRNA aspartic acid methyltransferase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0028707 Mt2 "Methyltransferase 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
POMBASE|SPBC19C2.02 pmt1 "tRNA methyltransferase" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.37LOW CONFIDENCE prediction!
3rd Layer2.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032604001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (377 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00035341001
RecName- Full=Cytosine-specific methyltransferase; EC=2.1.1.37; (444 aa)
  •   • 0.483

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
cd00315275 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi 2e-28
cd00315275 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi 5e-18
pfam00145320 pfam00145, DNA_methylase, C-5 cytosine-specific DN 2e-16
COG0270328 COG0270, Dcm, Site-specific DNA methylase [DNA rep 4e-16
TIGR00675315 TIGR00675, dcm, DNA-methyltransferase (dcm) 1e-14
>gnl|CDD|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology Back     alignment and domain information 
 Score =  110 bits (278), Expect = 2e-28
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 7   WLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSD---T 63
                PCQP++  G +K   D R   F +I+ ++    K P    +ENV G  T D   T
Sbjct: 66  LTGGFPCQPFSIAGKRKGFEDTRGTLFFEIIRILKE--KKPKYFLLENVKGLLTHDNGNT 123

Query: 64  HAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPL 106
              ++  L    Y     +L+   +GVP +R R F +  RK L
Sbjct: 124 LKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDL 166

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. Length = 275
>gnl|CDD|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology Back     alignment and domain information
>gnl|CDD|215747 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase Back     alignment and domain information
>gnl|CDD|223348 COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233085 TIGR00675, dcm, DNA-methyltransferase (dcm) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 316
PF00145335 DNA_methylase: C-5 cytosine-specific DNA methylase 100.0
TIGR00675315 dcm DNA-methyltransferase (dcm). All proteins in t 100.0
COG0270328 Dcm Site-specific DNA methylase [DNA replication, 100.0
cd00315275 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth 100.0
PRK10458467 DNA cytosine methylase; Provisional 100.0
KOG0919338 consensus C-5 cytosine-specific DNA methylase [Tra 100.0
PF13651336 EcoRI_methylase: Adenine-specific methyltransferas 81.92
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 Back     alignment and domain information 
Probab=100.00  E-value=3.3e-54  Score=397.22  Aligned_cols=263  Identities=23%  Similarity=0.359  Sum_probs=152.9

Q ss_pred             cccEEEeCCCCcHHhhccCCCCCCCcchhhHHHHHHHhhhhcCCCcEEEEcchhhhcCc---hHHHHHHHHHHcCCCeee
Q 021167            3 GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS---DTHAKMIEILANSDYLTQ   79 (316)
Q Consensus         3 ~~Dil~ggpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~~~P~~~~~ENV~~~~~~---~~~~~i~~~l~~~GY~v~   79 (316)
                      ++|||+||||||+||.+|++++.+|+|+.||++++|+|+++  +|++|+||||+||+++   ..++.|++.|+++||.+.
T Consensus        61 ~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~--~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~  138 (335)
T PF00145_consen   61 DVDLLIGGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKEL--KPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQ  138 (335)
T ss_dssp             T-SEEEEE---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHH--S-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEE
T ss_pred             cceEEEeccCCceEeccccccccccccchhhHHHHHHHhhc--cceEEEecccceeeccccccccccccccccccceeeh
Confidence            58999999999999999998899999999999999999999  9999999999999998   479999999999999999


Q ss_pred             EEEEccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCCccccccCCCCCCcccccCccCCchHHhhhh
Q 021167           80 EFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEF  159 (316)
Q Consensus        80 ~~vlna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  159 (316)
                      +.+|||++|||||+|+|+|+||+|++.....+.. .....+|....    .                 .....+.|+++.
T Consensus       139 ~~vlna~~yGvPQ~R~R~fivg~r~~~~~~~~~~-~~~~~~~~~~~----~-----------------~~~~~i~dl~~~  196 (335)
T PF00145_consen  139 WRVLNAADYGVPQNRERVFIVGIRKDLPLPPPFP-IPKFDFPEPKD----P-----------------TVSDAIRDLPDE  196 (335)
T ss_dssp             EEEEEGGGGTSSBE-EEEEEEEEEGGG--TSSCC-GTTEEC-SSCG----------------------SHHHHHGGGSTS
T ss_pred             hccccHhhCCCCCceeeEEEEEECCCCCcccccc-ccccccccccc----c-----------------cceeeEeecccc
Confidence            9999999999999999999999999875331000 00011111100    0                 000113333332


Q ss_pred             cCCCCCccccccccccccccccccCccccchhhccccccccccCcHHHhhhcCccc-cccC---CCCCcccccccceeee
Q 021167          160 SNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAM-DIVY---PDSKRCCCFTKSYYRY  235 (316)
Q Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-d~~~---p~~~~~~~~~~~y~R~  235 (316)
                      ....   ........  .......                 ..........+.... .+..   ............|++.
T Consensus       197 ~~~~---~~~~~~~~--~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (335)
T PF00145_consen  197 PSPK---DEDKYNFS--DRVIEDL-----------------NRIRNNTIKPGKGIPNKISRNRIDKIEDLKGPSRTYRRS  254 (335)
T ss_dssp             CCEC---CCCCGBHS--HCHHCSH-----------------CCSHHHHHHHCCCCSTHEECTSTTTTCECTTTCTCCTTS
T ss_pred             cccc---cccccccc--hhhhhhh-----------------ccccccccccccchhhhhhhhhccccccccccccccccc
Confidence            1000   00000000  0000000                 000000000000000 0000   0000001112222222


Q ss_pred             ecCCCce--eeeeccCCCCC---CccccCCCcccCCHHHHHHhCCCCCCcccCCCCCHHHHHHHhCCcccHHHHHHHHHH
Q 021167          236 VKGTGSL--LATVQPKNKGK---ASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQY  310 (316)
Q Consensus       236 ~~~~~s~--~~~~~~~~~~~---~~~ihp~~~R~LT~rE~arLqgFPd~f~f~~~~s~~~~~~qiGNAVp~~v~~~i~~~  310 (316)
                      .++....  +..........   ...+||.+.|.||+|||||||||||+|.|.|  +.+++|+||||||||+|+++|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~hp~~~R~LT~rE~aRLqgFPd~~~f~g--~~~~~~~qiGNAVpp~v~~~I~~~  332 (335)
T PF00145_consen  255 GRGEKMPPQIPTTGSTGKNGHRFRPFIHPEQNRRLTPREAARLQGFPDDFKFPG--SKTQQYKQIGNAVPPPVAEAIAKA  332 (335)
T ss_dssp             CTCC-BCCCCCSTSTTTTTHEHCCTEBTTSSSCB-BHHHHHHHTTSSTTS-S-S--SHHHHHHHHHCS--HHHHHHHHHH
T ss_pred             cccccccccccccccccccCCccccccCCCCCCcCcHHHHHHhCCCCCceEccC--CHHHHhceECCCcCHHHHHHHHHH
Confidence            2211000  00000000011   1278999999999999999999999999999  888999999999999999999999


Q ss_pred             HHh
Q 021167          311 LFA  313 (316)
Q Consensus       311 l~~  313 (316)
                      |++
T Consensus       333 i~~  335 (335)
T PF00145_consen  333 IKK  335 (335)
T ss_dssp             HH-
T ss_pred             hhC
Confidence            974

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
>TIGR00675 dcm DNA-methyltransferase (dcm) Back     alignment and domain information
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology Back     alignment and domain information
>PRK10458 DNA cytosine methylase; Provisional Back     alignment and domain information
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription] Back     alignment and domain information
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1g55_A343 Structure Of Human Dnmt2, An Enigmatic Dna Methyltr 2e-45
4h0n_A333 Crystal Structure Of Spodoptera Frugiperda Dnmt2 E2 3e-31
3qv2_A327 Structure Analysis Of Entamoeba Histolytica Methylt 4e-20
2uyh_A327 Hhai Dna Methyltransferase S87q-Q237s Mutant Comple 3e-09
1mht_A327 Covalent Ternary Structure Of Hhai Methyltransferas 5e-08
1svu_A327 Structure Of The Q237w Mutant Of Hhai Dna Methyltra 8e-08
1fjx_A327 Structure Of Ternary Complex Of Hhai Methyltransfer 9e-08
2zcj_A327 Ternary Structure Of The Glu119gln M.Hhai, C5-Cytos 1e-07
2uz4_A327 Hhai Dna Methyltransferase R165n Mutant Complex Wit 2e-07
2uyc_A327 Hhai Dna Methyltransferase R163n Mutant Complex Wit 2e-07
2z6u_A327 Ternary Structure Of The Glu119ala M.Hhai, C5-Cytos 2e-07
2z6q_A327 Ternary Structure Of Arg165ala M.Hhai C5-Cytosine D 4e-07
2i9k_A327 Engineered Extrahelical Base Destabilization Enhanc 5e-07
2z6a_A327 S-Adenosyl-L-Methionine-Dependent Methyl Transfer: 6e-07
1dct_A324 Dna (Cytosine-5) Methylase From Haeiii Covalently B 7e-05
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna Methyltransferase Homologue Length = 343 Back     alignment and structure 
Iteration: 1

 Score =  179 bits (453), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/320 (36%), Positives = 166/320 (51%), Gaps = 65/320 (20%)
Query: 8   LLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKM 67
           L+SPPCQP+TR G Q   +D+R  SFL IL+++P   K P  + +ENV GFE S T   +
Sbjct: 73  LMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLL 132
Query: 68  IEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAK--RKPLSFRCQLLNNQLLRSPSPLL 125
           I+ + N  +  QEF+LSP   G+P SR RYF +AK   +PL F+          +P  +L
Sbjct: 133 IQTIENXGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQ----------APGQVL 182
Query: 126 GNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFGA 185
                  I + +Q D        S   ++ FLE                      DD   
Sbjct: 183 MEFPKIEIHRKNQQDSDL-----SVKMLKDFLE----------------------DD--- 212
Query: 186 AEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLAT 245
                       ++ +L+P   + R+   +DIV P  +R  CFTK Y  Y++GTGS+L T
Sbjct: 213 ----------TDVNQYLLPPKSLLRYALLLDIVQPTXRRSVCFTKGYGSYIEGTGSVLQT 262
Query: 246 ---VQPKNKGKAS---SLKEQ-------HLRYFTPREVANLHSFPGDFQFPHHLSLRQRY 292
              VQ +N  K+    S +EQ        LRYFTP+E+ANL  FP +F FP  ++++QRY
Sbjct: 263 AEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRY 322
Query: 293 ALLGNSLSIAVVAPLLQYLF 312
            LLGNSL++ VVA L++ L+
Sbjct: 323 RLLGNSLNVHVVAKLIKILY 342
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2 E260a/e261a/k263a Mutant Length = 333 Back     alignment and structure
>pdb|3QV2|A Chain A, Structure Analysis Of Entamoeba Histolytica Methyltransferase Ehmeth Length = 327 Back     alignment and structure
>pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With 13mer Gcgc-Gmgc Oligonucleotide And Sah Length = 327 Back     alignment and structure
>pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna And S-Adenosyl-L-Homocysteine Length = 327 Back     alignment and structure
>pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna Methyltransferase: An Insight Into Protein-Protein Interactions Length = 327 Back     alignment and structure
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase Mutant (T250g) In Complex With Dna And Adohcy Length = 327 Back     alignment and structure
>pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna Methyltransferase, With Unmodified Dna And Adohcy Length = 327 Back     alignment and structure
>pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer Gcgc-Gmgc Oligonucleotide And Sah Length = 327 Back     alignment and structure
>pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer Gcgc-Gmgc Oligonucleotide And Sah Length = 327 Back     alignment and structure
>pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna Methyltransferase, With Unmodified Dna And Adohcy Length = 327 Back     alignment and structure
>pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna Methyltransferase With Unmodified Dna And Adohcy Length = 327 Back     alignment and structure
>pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination Of Dna Methyltransferase M.Hhai Length = 327 Back     alignment and structure
>pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates During Dna Cytosine Methylation Length = 327 Back     alignment and structure
>pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To Dna Length = 324 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1g55_A343 DNA cytosine methyltransferase DNMT2; human DNA me 5e-62
3qv2_A327 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H 1e-32
3qv2_A327 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H 2e-21
1dct_A324 Protein (modification methylase HAEIII); enzyme, c 2e-20
3me5_A482 Cytosine-specific methyltransferase; structural ge 2e-15
2c7p_A327 Modification methylase HHAI; DNA methyltransferase 2e-13
2c7p_A327 Modification methylase HHAI; DNA methyltransferase 2e-04
3g7u_A376 Cytosine-specific methyltransferase; DNA-binding, 1e-09
3g7u_A376 Cytosine-specific methyltransferase; DNA-binding, 9e-06
3swr_A1002 DNA (cytosine-5)-methyltransferase 1; epigenetics, 9e-09
3swr_A1002 DNA (cytosine-5)-methyltransferase 1; epigenetics, 8e-04
3av4_A1330 DNA (cytosine-5)-methyltransferase 1; CXXC-type zi 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2qrv_A295 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 2e-04
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Length = 343 Back     alignment and structure
 Score =  199 bits (508), Expect = 5e-62
 Identities = 104/324 (32%), Positives = 153/324 (47%), Gaps = 61/324 (18%)

Query: 2   YGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS 61
                 L+SPPCQP+TR G Q   +D+R  SFL IL+++P   K P  + +ENV GFE S
Sbjct: 67  LSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVS 126

Query: 62  DTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSP 121
            T   +I+ + N  +  QEF+LSP   G+P SR RYF +AK +      Q     L+  P
Sbjct: 127 STRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFP 186

Query: 122 SPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVD 181
                        K +    +      S   ++ FLE                       
Sbjct: 187 -------------KIEIHRKNQQDSDLSVKMLKDFLEDD--------------------- 212

Query: 182 DFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGS 241
                           ++ +L+P   + R+   +DIV P  +R  CFTK Y  Y++GTGS
Sbjct: 213 --------------TDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGS 258

Query: 242 LLATVQ----------PKNKGKASSLKEQH---LRYFTPREVANLHSFPGDFQFPHHLSL 288
           +L T +            N  +   + +     LRYFTP+E+ANL  FP +F FP  +++
Sbjct: 259 VLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITV 318

Query: 289 RQRYALLGNSLSIAVVAPLLQYLF 312
           +QRY LLGNSL++ VVA L++ L+
Sbjct: 319 KQRYRLLGNSLNVHVVAKLIKILY 342
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Length = 327 Back     alignment and structure
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Length = 327 Back     alignment and structure
>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine methylase, transferase/DNA complex; HET: DNA C49 5CM; 2.80A {Haemophilus influenzae biotypeaegyptius} SCOP: c.66.1.26 Length = 324 Back     alignment and structure
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A Length = 482 Back     alignment and structure
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Length = 327 Back     alignment and structure
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Length = 327 Back     alignment and structure
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Length = 376 Back     alignment and structure
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Length = 376 Back     alignment and structure
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Length = 1002 Back     alignment and structure
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Length = 1002 Back     alignment and structure
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Length = 1330 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
3qv2_A327 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H 100.0
4h0n_A333 DNMT2; SAH binding, transferase; HET: SAH; 2.71A { 100.0
3g7u_A376 Cytosine-specific methyltransferase; DNA-binding, 100.0
1g55_A343 DNA cytosine methyltransferase DNMT2; human DNA me 100.0
3ubt_Y331 Modification methylase HAEIII; protein-DNA complex 100.0
2c7p_A327 Modification methylase HHAI; DNA methyltransferase 100.0
4ft4_B784 DNA (cytosine-5)-methyltransferase 1; chromodomain 100.0
3swr_A1002 DNA (cytosine-5)-methyltransferase 1; epigenetics, 100.0
3av4_A1330 DNA (cytosine-5)-methyltransferase 1; CXXC-type zi 100.0
4dkj_A403 Cytosine-specific methyltransferase; CG-specificit 100.0
3me5_A482 Cytosine-specific methyltransferase; structural ge 100.0
2qrv_A295 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 100.0
2pv0_B386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 99.87
2qrv_B230 DNA (cytosine-5)-methyltransferase 3-like; DNA met 99.87
2igt_A332 SAM dependent methyltransferase; alpha-beta sandwi 93.62
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Back     alignment and structure
Probab=100.00  E-value=3e-59  Score=426.67  Aligned_cols=244  Identities=37%  Similarity=0.703  Sum_probs=207.9

Q ss_pred             cccEEEeCCCCcHH--hhccCCCCCCCcchhhHHHHHH-HhhhhcCCCcEEEEcchhhhcCchHHHHHHHHHHcCCCeee
Q 021167            3 GAHAWLLSPPCQPY--TRQGLQKQSSDARAFSFLKILE-LIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQ   79 (316)
Q Consensus         3 ~~Dil~ggpPCq~f--S~ag~~~~~~d~r~~L~~~~~~-~i~~~~~~P~~~~~ENV~~~~~~~~~~~i~~~l~~~GY~v~   79 (316)
                      ++|+|+||||||+|  |.+|++++.+|+|+.||+++++ +|+++.++|++|+||||+||+++.+++.|++.|+++||.+.
T Consensus        76 ~~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~  155 (327)
T 3qv2_A           76 NCNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQYYIK  155 (327)
T ss_dssp             CCCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEE
Confidence            58999999999999  9999999999999999999999 99987336999999999999999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCCccccccCCCCCCcccccCccCCchHHhhhh
Q 021167           80 EFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEF  159 (316)
Q Consensus        80 ~~vlna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  159 (316)
                      +.+|||++||+||+|+|+|+||+|++  +          .||.+...                     ....++.|+|+.
T Consensus       156 ~~vl~a~~yGvPQ~R~R~fivg~r~~--f----------~fP~~~~~---------------------~~~~~l~d~Le~  202 (327)
T 3qv2_A          156 DIICSPIDIGIPNSRTRYYVMARLTP--F----------KNEIQLHQ---------------------EKESMISNYLDN  202 (327)
T ss_dssp             EEEECGGGGTCSBCCCEEEEEEESSC--C----------CSCCCCCC---------------------CSCCCGGGGCCS
T ss_pred             EEEEeHHHcCCCccceEEEEEEEeCC--C----------CCCCcccc---------------------cccccHHHHhcc
Confidence            99999999999999999999999997  3          34544320                     011237788863


Q ss_pred             cCCCCCccccccccccccccccccCccccchhhccccccccccCcHHHhhhcCccccccCCCCCcccccccceeeeecCC
Q 021167          160 SNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGT  239 (316)
Q Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~p~~~~~~~~~~~y~R~~~~~  239 (316)
                      ...                                    .+|.+++..+.+++..+|++.|++..+.|++++|+++..++
T Consensus       203 ~~~------------------------------------~~y~l~~~~~~~~~~~~di~~~~~~~~~~~t~~y~~y~~~~  246 (327)
T 3qv2_A          203 NVN------------------------------------ESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSYTKIVEGT  246 (327)
T ss_dssp             SCC------------------------------------GGGBCCHHHHHHHGGGSCEEETTSSCBCCCCTTTTTSSTTS
T ss_pred             ccc------------------------------------ccccCCHHHHHhhhcccccccccccccccccccceEEecCC
Confidence            211                                    33566777788888899999999998999999999999998


Q ss_pred             Cceeeeecc--CCCCCCccccCCCcccCCHHHHHHhCCCCCCcccC-CCCCHHHHHHHhCCcccHHHHHHHHHHHHhhc
Q 021167          240 GSLLATVQP--KNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFP-HHLSLRQRYALLGNSLSIAVVAPLLQYLFAQA  315 (316)
Q Consensus       240 ~s~~~~~~~--~~~~~~~~ihp~~~R~LT~rE~arLqgFPd~f~f~-~~~s~~~~~~qiGNAVp~~v~~~i~~~l~~~~  315 (316)
                      ++.++....  ........+|+.+.|+||+||++|||||||+|.|+ +.+|.+++|+|+||||||+|+++|+++|++.+
T Consensus       247 gs~l~~~~~~~~~~~~~~~~~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l  325 (327)
T 3qv2_A          247 GSIYCPIEPHFIPVKKAEDLLNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL  325 (327)
T ss_dssp             CCEEESSCSSCCCCSSGGGGTTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTS
T ss_pred             CceeecccccccccCCceeecCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHh
Confidence            888743221  11223567799999999999999999999999999 66799999999999999999999999998865
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} Back     alignment and structure
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Back     alignment and structure
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Back     alignment and structure
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* Back     alignment and structure
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Back     alignment and structure
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* Back     alignment and structure
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Back     alignment and structure
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Back     alignment and structure
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} Back     alignment and structure
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A Back     alignment and structure
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Back     alignment and structure
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Back     alignment and structure
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 316
d1g55a_343 c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 1e-23
d2c7pa1327 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilu 1e-10
d1dcta_324 c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus a 5e-10
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.1 bits (240), Expect = 1e-23
 Identities = 104/322 (32%), Positives = 153/322 (47%), Gaps = 61/322 (18%)

Query: 4   AHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDT 63
               L+SPPCQP+TR G Q   +D+R  SFL IL+++P   K P  + +ENV GFE S T
Sbjct: 69  FDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSST 128

Query: 64  HAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSP 123
              +I+ + N  +  QEF+LSP   G+P SR RYF +AK +      Q     L+  P  
Sbjct: 129 RDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFP-- 186

Query: 124 LLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDF 183
                      K +    +      S   ++ FLE                         
Sbjct: 187 -----------KIEIHRKNQQDSDLSVKMLKDFLE------------------------- 210

Query: 184 GAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLL 243
                         ++ +L+P   + R+   +DIV P  +R  CFTK Y  Y++GTGS+L
Sbjct: 211 ----------DDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVL 260

Query: 244 ATVQPKN-------------KGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQ 290
            T +                + + + L    LRYFTP+E+ANL  FP +F FP  ++++Q
Sbjct: 261 QTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQ 320

Query: 291 RYALLGNSLSIAVVAPLLQYLF 312
           RY LLGNSL++ VVA L++ L+
Sbjct: 321 RYRLLGNSLNVHVVAKLIKILY 342
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Length = 327 Back     information, alignment and structure
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Length = 324 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
d1g55a_343 DNMT2 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2c7pa1327 DNA methylase HhaI {Haemophilus haemolyticus [TaxI 100.0
d1dcta_324 DNA methylase HaeIII {Haemophilus aegyptius [TaxId 100.0
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-58  Score=424.01  Aligned_cols=263  Identities=39%  Similarity=0.674  Sum_probs=159.3

Q ss_pred             cccEEEeCCCCcHHhhccCCCCCCCcchhhHHHHHHHhhhhcCCCcEEEEcchhhhcCchHHHHHHHHHHcCCCeeeEEE
Q 021167            3 GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFI   82 (316)
Q Consensus         3 ~~Dil~ggpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~i~~~l~~~GY~v~~~v   82 (316)
                      ++|||+||||||+||.||++++.+|+|+.||++++++|+++..+|++|+||||+|+.+.+.++.|++.|+++||.+.+.+
T Consensus        68 ~~Dll~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~v  147 (343)
T d1g55a_          68 SFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFL  147 (343)
T ss_dssp             CCSEEEECCC------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEEE
T ss_pred             CccEEEeecccccccccccccccccccccccchhhhhHhhhcCCCceeeeeccCCcccchhhHHHHhhhhccccccceee
Confidence            68999999999999999999999999999999999999987436999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCCccccccCCCCCCcccccCccCCchHHhhhhcCC
Q 021167           83 LSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNS  162 (316)
Q Consensus        83 lna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  162 (316)
                      |||++|||||+|+|+|+||+|++...+++.+....+++|...... ..            ..........+.++++....
T Consensus       148 lna~dyGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~~~l~~~~~  214 (343)
T d1g55a_         148 LSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIEIHR-KN------------QQDSDLSVKMLKDFLEDDTD  214 (343)
T ss_dssp             ECGGGGTCSCCCCEEEEEEEESSSCCTTCCTTCEESSCCC-------------------------CCCCCGGGGCCTTCC
T ss_pred             eeccccCCcccceeEEEEEEeCCccccCCCcccccccCCcccccc-cc------------cccccccccchhhhcccccc
Confidence            999999999999999999999997665543333333333221100 00            00001111224444432211


Q ss_pred             CCCccccccccccccccccccCccccchhhccccccccccCcHHHhhhcCccccccCCCCCcccccccceeeeecCCCce
Q 021167          163 GDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSL  242 (316)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~p~~~~~~~~~~~y~R~~~~~~s~  242 (316)
                      .                                   ..+..+.....++....+...+....+.+.+..++....+.++.
T Consensus       215 ~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (343)
T d1g55a_         215 V-----------------------------------NQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSV  259 (343)
T ss_dssp             H-----------------------------------HHHBCCHHHHHHHGGGCCEECTTCSCCCCCCTTTTTCCTTSCCE
T ss_pred             h-----------------------------------hhcccChHhhhhhhhhcccccccccccchhcccccccccCCCcc
Confidence            0                                   00111111111111111111122222222222221111111111


Q ss_pred             eeeec-------------cCCCCCCccccCCCcccCCHHHHHHhCCCCCCcccCCCCCHHHHHHHhCCcccHHHHHHHHH
Q 021167          243 LATVQ-------------PKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQ  309 (316)
Q Consensus       243 ~~~~~-------------~~~~~~~~~ihp~~~R~LT~rE~arLqgFPd~f~f~~~~s~~~~~~qiGNAVp~~v~~~i~~  309 (316)
                      +.+..             .........+||.+.|.||+|||||||||||+|.|++.+|.+++|+||||||||+|+++|++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~LT~rE~arLQgFPd~f~~~~~~s~~~~ykqiGNaVp~~v~~~i~k  339 (343)
T d1g55a_         260 LQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIK  339 (343)
T ss_dssp             EECCSSCCHHHHHHTTTTCCHHHHHHHHHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             cccccccccCCcccccccCCCCCCcccCCCCCCcCCCHHHHHHhCCCCCCCEECCCCCHHHHhhhEeCCccHHHHHHHHH
Confidence            11000             00011235679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHh
Q 021167          310 YLFA  313 (316)
Q Consensus       310 ~l~~  313 (316)
                      .|+|
T Consensus       340 ~l~e  343 (343)
T d1g55a_         340 ILYE  343 (343)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            9975
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Back     information, alignment and structure
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Back     information, alignment and structure