Citrus Sinensis ID: 021168

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MSEGGGDEALSSLNSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMDPLAVEQRYIDAINGIVRTTTNGRLTPIKATRSSCLSSACSSPKSGSPDSMAVESMPHESILMDGYQNSRLSMHKVQSSPSLYNLSNPHLQSSSVSPHHFYQNPQHYYQNHHQPHPPYQPHRPAPLPVSTGPVDLSRGPMGHGQALYHSRSYSASRNYLGLGTHNKYAGFDESMYGSSLSGPES
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEccccEEEcccccccEEEEcccEEEEEEcccccHHHHHHHHHHHccccEEEEEEccccccccEEEcccHHHHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEEEcccEEccccccccEEEEcccEEEEEEcccccHHHHHHHHHHHHcccEEEEEEcccccHHEEEEEccHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccccccccHHHHHEHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccc
Coil and Loop (DISEMBL)
msegggdealsslnsprSRVKFLCshggkilpravdgnlkyvggetrvvavprEINFSELMKKLstiddgdivlkyqlipedldslvsvrndEDVKHMMEEYdrhgsegtprlraflfpstpvvvesqippmdplaVEQRYIDAINGIVrtttngrltpikatrssclssacsspksgspdsmavesmphesilmdgyqnsrlsmhkvqsspslynlsnphlqsssvsphhfyqnpqhyyqnhhqphppyqphrpaplpvstgpvdlsrgpmghgqalyhsrsysasrnylglgthnkyagfdesmygsslsgpes
Flexible Loop (DISEMBL)
msegggdealsslnsprSRVKFLCshggkilpravdgnlkyVGGETrvvavpreiNFSELMKKLSTIDDGDIVLKYqlipedldslvSVRNDEDVKHMMEEYdrhgsegtpRLRAFLFPSTPVVVESQIPPMDPLAVEQRYIDAINGIvrtttngrltpikatrssclssacsspksgspdSMAVESMPHESILMDGYQNSRLSMHKVQSSPSLYNLSNPHLQSSSVSPHHFYQNPQHYYQNHHQPHPPYQPHRPAPLPVSTGPVDLSRGPMGHGQALYHSRSYSASRNYLGLGTHNKYAGFDEsmygsslsgpes
Low Complexity Region (SEG)
MSEGGGDEALSSLNSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMDPLAVEQRYIDAINGIVRTTTNGRLTPIKATRssclssacsspksgspdsMAVESMPHESILMDGYQNSRLSMHKVQSSPSLYNLSNPHLQSSSVSphhfyqnpqhyyqnhhqphppyqphrpAPLPVSTGPVDLSRGPMGHGQALYHSRSYSASRNYLGLGTHNKYAGFDESMYGSSLSGPES
Disordered region (IsUnstruct)
*******************VKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSV***********************LRAFLFPSTPVVVESQIPPMDPLAVEQRYIDAINGIVRTTTNGRLTPI*******************************************************************************************************************************RNYLGLGTHNKYAG***************
Disordered Region (DISOPRED)
*********************FLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFL*******************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*************NSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMDPLAVEQRYIDAINGIVRTTTNGRLTPIKA**********************VESMPHESILMDGYQNSRLSMHKVQSSPSLYNLSNPHLQSSSVSPHHFYQNPQHYYQNHHQPHPPYQPHRPAPLPVSTGPVDLSRGPMGHGQALYHSRSYSASRNYLGLGTHNKYAGFDESM**********
Disordered Region (DISPRO)
****************RSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPST***************VEQRYIDAINGI******************************************************************************VSPHHFYQNPQH********HPP****RPAPLPVSTGPVDLSRGPMGHGQALYHSR*YSASRNYLG************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEGGGDEALSSLNSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMDPLAVEQRYIDAINGIVRTTTNGRLTPIKATRSSCLSSACSSPKSGSPDSMAVESMPHESILMDGYQNSRLSMHKVQSSPSLYNLSNPHLQSSSVSPHHFYQNPQHYYQNHHQPHPPYQPHRPAPLPVSTGPVDLSRGPMGHGQALYHSRSYSASRNYLGLGTHNKYAGFDESMYGSSLSGPES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
359486249	337	PREDICTED: uncharacterized protein LOC10	0.917	0.860	0.522	2e-71
297739516	425	unnamed protein product [Vitis vinifera]	0.873	0.649	0.534	6e-71
255570986	361	ATP binding protein, putative [Ricinus c	0.664	0.581	0.639	2e-67
224119954	215	predicted protein [Populus trichocarpa]	0.680	1.0	0.601	4e-66
449511601	369	PREDICTED: uncharacterized LOC101215086	0.901	0.772	0.478	2e-63
224129700	305	predicted protein [Populus trichocarpa]	0.661	0.685	0.628	3e-63
449432940	357	PREDICTED: uncharacterized protein LOC10	0.889	0.787	0.475	3e-61
297795759	285	octicosapeptide/Phox/Bem1p domain-contai	0.848	0.940	0.483	4e-60
15240580	288	octicosapeptide/Phox/Bem1p domain-contai	0.851	0.934	0.481	1e-59
28393406	288	unknown protein [Arabidopsis thaliana]	0.851	0.934	0.478	7e-59

>gi|359486249|ref|XP_002263275.2| PREDICTED: uncharacterized protein LOC100257434 [Vitis vinifera]

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 166/318 (52%), Positives = 212/318 (66%), Gaps = 28/318 (8%)

Query: 14  NSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIV 73
            SP++RVK LCSHGGKILPRA DG LKYVGGETRVVA  R+INFSEL +K++++ DGD+V
Sbjct: 33  TSPKNRVKLLCSHGGKILPRATDGVLKYVGGETRVVAFSRDINFSELKQKVTSLFDGDLV 92

Query: 74  LKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMD 133
           LKYQL PEDLD+LVSV++DED++HM++EYDR   EGTPRLRAFLFPS PVV++ QI   D
Sbjct: 93  LKYQLSPEDLDALVSVKSDEDLRHMLDEYDRQEGEGTPRLRAFLFPSAPVVLDVQITSTD 152

Query: 134 PLAVEQRYIDAINGIVRTTTNGRLTPIKATRSS-CLSSACSSPKSGSPDSMAVESMP-HE 191
           P A+EQRYIDAINGIVR     ++ P K + +S  +SSACSSP S SPD  + +S   HE
Sbjct: 153 PHALEQRYIDAINGIVRIRPTLKIIPPKPSLASFTISSACSSPNSLSPDPFSHDSTTSHE 212

Query: 192 SILMDGYQNSRLSMHKVQSSPSLYN----LSNPHLQSSSVSPHHFYQNPQHYYQNHHQ-P 246
           S++  G       MHKV+SSPSLY+     ++ HL S  V     YQ+P HY+QN+ Q  
Sbjct: 213 SVVPRGAL-----MHKVRSSPSLYSPDQQTADTHLSSPLV-----YQHPNHYHQNYQQYH 262

Query: 247 HPPYQPHRPAPLPVSTGPVD-----LSRGPMGHGQALY---HSRSYSASRNYLGLGTHNK 298
           HP +Q  RP   P      +     LS+G    G+ L     S  YS++R + G G+ NK
Sbjct: 263 HPGFQSARPPQDPSKGAAGERSTSGLSKGRTDSGRGLMGSGPSSYYSSARQHKGFGSSNK 322

Query: 299 YAGFDESMYGSSLSGPES 316
           Y   +E   GSS  G ++
Sbjct: 323 YVHLEE---GSSHGGQKA 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739516|emb|CBI29698.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (699), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 161/301 (53%), Positives = 204/301 (67%), Gaps = 25/301 (8%)

Query: 14  NSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIV 73
            SP++RVK LCSHGGKILPRA DG LKYVGGETRVVA  R+INFSEL +K++++ DGD+V
Sbjct: 83  TSPKNRVKLLCSHGGKILPRATDGVLKYVGGETRVVAFSRDINFSELKQKVTSLFDGDLV 142

Query: 74  LKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMD 133
           LKYQL PEDLD+LVSV++DED++HM++EYDR   EGTPRLRAFLFPS PVV++ QI   D
Sbjct: 143 LKYQLSPEDLDALVSVKSDEDLRHMLDEYDRQEGEGTPRLRAFLFPSAPVVLDVQITSTD 202

Query: 134 PLAVEQRYIDAINGIVRTTTNGRLTPIKATRSS-CLSSACSSPKSGSPDSMAVESMP-HE 191
           P A+EQRYIDAINGIVR     ++ P K + +S  +SSACSSP S SPD  + +S   HE
Sbjct: 203 PHALEQRYIDAINGIVRIRPTLKIIPPKPSLASFTISSACSSPNSLSPDPFSHDSTTSHE 262

Query: 192 SILMDGYQNSRLSMHKVQSSPSLYN----LSNPHLQSSSVSPHHFYQNPQHYYQNHHQ-P 246
           S++  G       MHKV+SSPSLY+     ++ HL S  V     YQ+P HY+QN+ Q  
Sbjct: 263 SVVPRG-----ALMHKVRSSPSLYSPDQQTADTHLSSPLV-----YQHPNHYHQNYQQYH 312

Query: 247 HPPYQPHRPAPLPVSTGPVD-----LSRGPMGHGQALY---HSRSYSASRNYLGLGTHNK 298
           HP +Q  RP   P      +     LS+G    G+ L     S  YS++R + G G+ NK
Sbjct: 313 HPGFQSARPPQDPSKGAAGERSTSGLSKGRTDSGRGLMGSGPSSYYSSARQHKGFGSSNK 372

Query: 299 Y 299
           Y
Sbjct: 373 Y 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570986|ref|XP_002526444.1| ATP binding protein, putative [Ricinus communis] gi|223534224|gb|EEF35939.1| ATP binding protein, putative [Ricinus communis]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 135/211 (63%), Positives = 163/211 (77%), Gaps = 1/211 (0%)

Query: 16  PRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVLK 75
           P++R+KFLCS+GGKILPR  DG LKYVGGETRV+ VPR+ NFSELMKKL +  +GD+VLK
Sbjct: 31  PKNRMKFLCSYGGKILPRPADGLLKYVGGETRVIGVPRDTNFSELMKKLKSEFEGDMVLK 90

Query: 76  YQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMDPL 135
           YQ++PE+LD LVSVR DED+KHM++EYDRH S GT +LRAFLFPSTPV++E+Q  P DP 
Sbjct: 91  YQVMPEELDVLVSVRTDEDLKHMLDEYDRHESGGTSKLRAFLFPSTPVILENQNGPADPH 150

Query: 136 AVEQRYIDAINGIVRTTTNGRLTPIKATRSSCLSSACSSPKSGSPDSMAVESMPHESILM 195
           AVEQRYIDAIN  VR + N R   I A R S   SA SSPK  SPD   +++  HE I M
Sbjct: 151 AVEQRYIDAINNTVR-SANCRPPTIIANRPSFSLSASSSPKGNSPDGNTMDATTHEHIFM 209

Query: 196 DGYQNSRLSMHKVQSSPSLYNLSNPHLQSSS 226
           + Y ++R  MHKV SSPSLYNL+ PH QS+S
Sbjct: 210 NSYHSNRFPMHKVHSSPSLYNLNAPHHQSNS 240

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119954|ref|XP_002331101.1| predicted protein [Populus trichocarpa] gi|222872829|gb|EEF09960.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 130/216 (60%), Positives = 166/216 (76%), Gaps = 1/216 (0%)

Query: 18  SRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQ 77
           +RVKFLCS+GG ILPRAVDG+LKY+GGETRV+A+PR+I FSE  KKLS   +GD+VLKYQ
Sbjct: 1   NRVKFLCSYGGNILPRAVDGHLKYIGGETRVIAIPRDITFSEFTKKLSAEFEGDMVLKYQ 60

Query: 78  LIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMDPLAV 137
           +IPE+LD LVSV++DED+KHM++EYDRH S GTP+ RAFLFPS P  +E +  PMDP A 
Sbjct: 61  VIPEELDVLVSVKSDEDLKHMLDEYDRHESAGTPKFRAFLFPSNPAAIE-KTTPMDPCAP 119

Query: 138 EQRYIDAINGIVRTTTNGRLTPIKATRSSCLSSACSSPKSGSPDSMAVESMPHESILMDG 197
           EQRY+D+ING+VRTT N +L PI A  SS   SA SSPK  SP+    +S PHE   ++ 
Sbjct: 120 EQRYLDSINGMVRTTANFKLPPINANWSSSSVSASSSPKCTSPEGNTFDSAPHEPTCVNN 179

Query: 198 YQNSRLSMHKVQSSPSLYNLSNPHLQSSSVSPHHFY 233
           +  SR  + +V SSPSL NL++PH QS++++ HH Y
Sbjct: 180 HLVSRKLLTRVHSSPSLCNLNSPHHQSNNLNNHHLY 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511601|ref|XP_004164002.1| PREDICTED: uncharacterized LOC101215086 [Cucumis sativus]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 155/324 (47%), Positives = 203/324 (62%), Gaps = 39/324 (12%)

Query: 15  SPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVL 74
           SPRS++KFLCS+GGKILPR  DG+LKYVGGETRV+A+PR+I F +LMKKL+ + DGD+VL
Sbjct: 26  SPRSKLKFLCSYGGKILPRPTDGHLKYVGGETRVIAMPRDIKFPDLMKKLTALFDGDMVL 85

Query: 75  KYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMDP 134
           KYQL+PEDLD LVSVR+DED+KHM++EYDR  SEGTP+LR FLFPS P+V+E+Q    DP
Sbjct: 86  KYQLVPEDLDVLVSVRSDEDLKHMLDEYDRLESEGTPKLRCFLFPSNPIVMEAQPFSSDP 145

Query: 135 LAVEQRYIDAINGIVR--TTTNGRLTPIKATRSS-CLSSACSSPKSGSPDSMAVESMPHE 191
             +EQRY++AINGIVR  ++ + +L+P  A R +  +SSACSSPKS SPD+   ES+  E
Sbjct: 146 HQIEQRYLEAINGIVRSGSSASAKLSPTTANRPTFSISSACSSPKSSSPDAQTAESVAQE 205

Query: 192 SILMDGYQNSRLSMHKVQSSPSLYNLSN--PHLQSSSVSPHHFYQNPQHY---------- 239
           +   +  + SR  MHKV SSPSL + +N  P      VS HH  Q   HY          
Sbjct: 206 TFSWNSMKLSRPPMHKVHSSPSLCSFNNLQPPTNVIPVSKHHIQQRHYHYQQNQLQQQQQ 265

Query: 240 -------------YQNHHQPHPPYQPHRPAPLPVSTGP------VDLSRGPMGHGQALYH 280
                        YQ+   P    + + P  +P++  P       D  R PMG   +   
Sbjct: 266 QQQQQQQQQHHNSYQSSRIPPEFSRSNAPERVPMNLSPSPPIGRSDFGRSPMGPNVS--- 322

Query: 281 SRSYSASRNYLGLGTHNKYAGFDE 304
              +++SR   G+G  NKY   DE
Sbjct: 323 --HHTSSRQQRGIGLWNKYGYSDE 344

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129700|ref|XP_002328781.1| predicted protein [Populus trichocarpa] gi|222839079|gb|EEE77430.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 132/210 (62%), Positives = 167/210 (79%), Gaps = 1/210 (0%)

Query: 9   ALSSLNSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTID 68
           A+++ +SP++RVK LCS+GGKI+PRAVDG+LKYVGGETRV+A+PR+INF+EL KKLS   
Sbjct: 7   AVAATSSPKNRVKLLCSYGGKIMPRAVDGHLKYVGGETRVIAIPRDINFTELKKKLSAEF 66

Query: 69  DGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQ 128
           +GD+VLKYQ+IPE+LD LVSVR +ED+KHM++EYDRH SEGTP+LRAFLFPS P  +E  
Sbjct: 67  EGDMVLKYQVIPEELDVLVSVRTNEDLKHMLDEYDRHESEGTPKLRAFLFPSNPAAIEKS 126

Query: 129 IPPMDPLAVEQRYIDAINGIVRTTTNGRLTPIKATRSSCLSSACSSPKSGSPDSMAVESM 188
             PMDP A EQ Y++A+NG+VRTT N RL+PI A   S   SA SSPKS SP+S  V+S+
Sbjct: 127 T-PMDPSAPEQHYVEAVNGMVRTTANFRLSPINANHPSFSLSASSSPKSTSPESNTVDSV 185

Query: 189 PHESILMDGYQNSRLSMHKVQSSPSLYNLS 218
           P+E   M+ Y  SR  M +V SSPSL NL+
Sbjct: 186 PNEPTFMNSYHVSRNPMTRVHSSPSLCNLN 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432940|ref|XP_004134256.1| PREDICTED: uncharacterized protein LOC101215086 [Cucumis sativus]

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 153/322 (47%), Positives = 200/322 (62%), Gaps = 41/322 (12%)

Query: 15  SPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVL 74
           SPRS++KFLCS+GGKILPR  DG+LKYVGGETRV+A+PR+I F +LMKKL+ + DGD+VL
Sbjct: 20  SPRSKLKFLCSYGGKILPRPTDGHLKYVGGETRVIAMPRDIKFPDLMKKLTALFDGDMVL 79

Query: 75  KYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMDP 134
           KYQL+PEDLD LVSVR+DED+KHM++EYDR  SEGTP+LR FLFPS P+V+E+Q    DP
Sbjct: 80  KYQLVPEDLDVLVSVRSDEDLKHMLDEYDRLESEGTPKLRCFLFPSNPIVMEAQPFSSDP 139

Query: 135 LAVEQRYIDAINGIVR--TTTNGRLTPIKATRSS-CLSSACSSPKSGSPDSMAVESMPHE 191
             +EQRY++AINGIVR  ++ + +L+P  A R +  +SSACSSPKS SPD+   ES+  E
Sbjct: 140 HQIEQRYLEAINGIVRSGSSASAKLSPTTANRPTFSISSACSSPKSSSPDAQTAESVAQE 199

Query: 192 SILMDGYQNSRLSMHKVQSSPSLYNLSN--PHLQSSSVSPHHFYQN-------------- 235
           +   +  + SR  MHKV SSPSL + +N  P      VS HH  Q               
Sbjct: 200 TFSWNSMKLSRPPMHKVHSSPSLCSFNNLQPPTNVIPVSKHHIQQRHYHYQQNQLQQQQQ 259

Query: 236 -------------PQHYYQNHHQPHPPYQPHRPAPLPVSTGPVDLSRGPMGHGQALYHSR 282
                        P  + +++    P   P   +P P   G  D  R PMG   +     
Sbjct: 260 QQQHHNSYQSSRIPPEFSRSN---APERVPMNLSPSP-PIGRSDFGRSPMGPNVS----- 310

Query: 283 SYSASRNYLGLGTHNKYAGFDE 304
            +++SR   G+G  NKY   DE
Sbjct: 311 HHTSSRQQRGIGLWNKYGYSDE 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795759|ref|XP_002865764.1| octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297311599|gb|EFH42023.1| octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/306 (48%), Positives = 194/306 (63%), Gaps = 38/306 (12%)

Query: 15  SPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVL 74
           SP S+VKF+CS GG+ILPR  DG LKYVGGETRV+AV  +I+FSEL+KKL+ I + DIVL
Sbjct: 6   SPSSKVKFMCSFGGRILPRPSDGVLKYVGGETRVIAVSPDISFSELVKKLAAITENDIVL 65

Query: 75  KYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMDP 134
           KYQ+IPEDLD+LVSV++DEDVKHM+EEY+RH    TP+LR FLFP+ PVV+E+Q+ P++P
Sbjct: 66  KYQIIPEDLDALVSVKSDEDVKHMIEEYNRH---ETPKLRTFLFPANPVVLENQLGPIEP 122

Query: 135 LAVEQRYIDAINGIVRTTTNGRL--TPIKATRSSCLSSACSSPKS-GSPDSMAVESMPHE 191
             +EQRYI+AINGI+RT+ +      PIK TR S   S CSSPKS  SPD  + E +P E
Sbjct: 123 QTIEQRYIEAINGILRTSKSATALRAPIK-TRPSFTVSTCSSPKSESSPDGYSHE-LP-E 179

Query: 192 SILMDGYQNSRL-SMHKVQSSPSLYNLSNPHLQSSSVSPHHFYQNPQHYYQNHHQPHPPY 250
           +   + YQ SRL  MHKV SSP++     P+                H++  + QP P Y
Sbjct: 180 TSFQNNYQLSRLYPMHKVHSSPNISQQLQPY---------------SHFHNAYLQP-PNY 223

Query: 251 QPHRPAPLPVSTGPVDLSRGPMGHGQALYHSRSYSASRNYLGLGTHNKYAGFDESMYGSS 310
               P P      P+D+ RG +G  Q      SY+ + N  G G    +   D   +G +
Sbjct: 224 LTCWPRP----PTPLDIPRG-IGWDQ------SYTTTHNS-GCGNGKCWCNDDRRFWGRA 271

Query: 311 LSGPES 316
            S P+S
Sbjct: 272 SSVPQS 277

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240580|ref|NP_199803.1| octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis thaliana] gi|8777423|dbj|BAA97013.1| unnamed protein product [Arabidopsis thaliana] gi|56381921|gb|AAV85679.1| At5g49920 [Arabidopsis thaliana] gi|58331811|gb|AAW70403.1| At5g49920 [Arabidopsis thaliana] gi|332008488|gb|AED95871.1| octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis thaliana]

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/303 (48%), Positives = 192/303 (63%), Gaps = 34/303 (11%)

Query: 18  SRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQ 77
           S+VKF+CS GG+ILPR  D  LKYVGGETRVVAV  +I+FSELMKKL+ I + DIVLKYQ
Sbjct: 8   SKVKFMCSFGGRILPRPSDSVLKYVGGETRVVAVSPDISFSELMKKLTAITENDIVLKYQ 67

Query: 78  LIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMDPLAV 137
           +IPEDLD+LVSV++DEDVKHM+EEY+RH    TP+LR FLFP+ PVV+ESQ+ P++P  +
Sbjct: 68  IIPEDLDALVSVKSDEDVKHMIEEYNRH---ETPKLRTFLFPANPVVLESQLGPIEPQTI 124

Query: 138 EQRYIDAINGIVRTTTNGRL--TPIKATRSSCLSSACSSPKSGSPDSMAVESMPHESILM 195
           EQRYI+AINGI+RT+ +      PIK TR S   S CSSPKS SPD  + E  P E+   
Sbjct: 125 EQRYIEAINGILRTSKSATALRAPIK-TRPSFTVSTCSSPKSESPDGYSHE--PPETSFQ 181

Query: 196 DGYQNSRL-SMHKVQSSPSLYNLSNPHLQSSSVSPHHFYQNPQHYYQNHHQPHPPYQPHR 254
           + YQ SRL  MH+V SSP++ +   PH    + + + + Q P +Y           +P  
Sbjct: 182 NNYQLSRLYPMHRVHSSPNISHQLQPHSHYHNHNHNAYVQPPTNYLT--------CRPRL 233

Query: 255 PAPLPVSTGPVDLSRGPMGHGQALYHSRSYSASRNYLGLGTHNKYAGFDE-SMYGSSLSG 313
           P PL +  G        +G  Q      SY+ + N    G + KY   D+   +G + S 
Sbjct: 234 PTPLEIPRG--------IGWDQ------SYTTTHN--SGGGNGKYGCNDDRRFWGRASSV 277

Query: 314 PES 316
           P+S
Sbjct: 278 PQS 280

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28393406|gb|AAO42126.1| unknown protein [Arabidopsis thaliana]

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 145/303 (47%), Positives = 191/303 (63%), Gaps = 34/303 (11%)

Query: 18  SRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQ 77
           S+VKF+CS GG+ILPR  D  LKYVGGETRVVAV  +I+FSELMKKL+ I + DIVLKYQ
Sbjct: 8   SKVKFMCSFGGRILPRPSDSVLKYVGGETRVVAVSPDISFSELMKKLTAITENDIVLKYQ 67

Query: 78  LIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMDPLAV 137
           +IPEDLD+LVSV++DEDVKHM+EEY+RH    TP+LR FLFP+ PVV+ESQ+ P++P  +
Sbjct: 68  IIPEDLDALVSVKSDEDVKHMIEEYNRH---ETPKLRTFLFPANPVVLESQLGPIEPQTI 124

Query: 138 EQRYIDAINGIVRTTTNGRL--TPIKATRSSCLSSACSSPKSGSPDSMAVESMPHESILM 195
           EQRYI+AIN I+RT+ +      PIK TR S   S CSSPKS SPD  + E  P E+   
Sbjct: 125 EQRYIEAINSILRTSKSATALRAPIK-TRPSFTVSTCSSPKSESPDGYSHE--PPETSFQ 181

Query: 196 DGYQNSRL-SMHKVQSSPSLYNLSNPHLQSSSVSPHHFYQNPQHYYQNHHQPHPPYQPHR 254
           + YQ SRL  MH+V SSP++ +   PH    + + + + Q P +Y           +P  
Sbjct: 182 NNYQLSRLYPMHRVHSSPNISHQLQPHSHYHNHNHNAYVQPPTNYLT--------CRPRL 233

Query: 255 PAPLPVSTGPVDLSRGPMGHGQALYHSRSYSASRNYLGLGTHNKYAGFDE-SMYGSSLSG 313
           P PL +  G        +G  Q      SY+ + N    G + KY   D+   +G + S 
Sbjct: 234 PTPLEIPRG--------IGWDQ------SYTTTHN--SGGGNGKYGCNDDRRFWGRASSV 277

Query: 314 PES 316
           P+S
Sbjct: 278 PQS 280

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2158839	288	AT5G49920 "AT5G49920" [Arabido	0.632	0.694	0.552	1.2e-51
TAIR|locus:2174552	1054	AT5G57610 [Arabidopsis thalian	0.449	0.134	0.547	2.4e-31
TAIR|locus:2102787	1171	AT3G46920 [Arabidopsis thalian	0.414	0.111	0.437	6.3e-26
TAIR|locus:2144721	531	AT5G09620 "AT5G09620" [Arabido	0.332	0.197	0.517	1.5e-25
TAIR|locus:2179366	513	AT5G64430 "AT5G64430" [Arabido	0.405	0.249	0.442	2.9e-23
TAIR|locus:2044702	1257	AT2G35050 [Arabidopsis thalian	0.427	0.107	0.437	8.6e-23
TAIR|locus:2038836	720	PDE331 "PIGMENT DEFECTIVE 331"	0.433	0.190	0.453	1.5e-22
TAIR|locus:2115658	477	AT4G05150 [Arabidopsis thalian	0.430	0.285	0.441	3.6e-22
TAIR|locus:2033595	174	AT1G70640 "AT1G70640" [Arabido	0.351	0.637	0.495	9e-22
TAIR|locus:2089648	666	AT3G18230 [Arabidopsis thalian	0.446	0.211	0.402	1.9e-21

TAIR|locus:2158839 AT5G49920 "AT5G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 116/210 (55%), Positives = 147/210 (70%)

Query:    15 SPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVL 74
             SP S+VKF+CS GG+ILPR  D  LKYVGGETRVVAV  +I+FSELMKKL+ I + DIVL
Sbjct:     6 SP-SKVKFMCSFGGRILPRPSDSVLKYVGGETRVVAVSPDISFSELMKKLTAITENDIVL 64

Query:    75 KYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMDP 134
             KYQ+IPEDLD+LVSV++DEDVKHM+EEY+RH    TP+LR FLFP+ PVV+ESQ+ P++P
Sbjct:    65 KYQIIPEDLDALVSVKSDEDVKHMIEEYNRHE---TPKLRTFLFPANPVVLESQLGPIEP 121

Query:   135 LAVEQRYIDAINGIVRTTTNGRL--TPIKATRXXXXXXXXXXXXXXXXXXMAVESMPHES 192
               +EQRYI+AINGI+RT+ +      PIK TR                   + E  P E+
Sbjct:   122 QTIEQRYIEAINGILRTSKSATALRAPIK-TRPSFTVSTCSSPKSESPDGYSHE--PPET 178

Query:   193 ILMDGYQNSRL-SMHKVQSSPSLYNLSNPH 221
                + YQ SRL  MH+V SSP++ +   PH
Sbjct:   179 SFQNNYQLSRLYPMHRVHSSPNISHQLQPH 208

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2174552 AT5G57610 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 2.4e-31, P = 2.4e-31
 Identities = 80/146 (54%), Positives = 99/146 (67%)

Query:    10 LSSLNSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDD 69
             +SSLN    RVKFLCS  G ILPR  DG L+YVGGETR+V+V R+I + ELM K+  + D
Sbjct:    14 VSSLNDEPHRVKFLCSFLGSILPRPQDGKLRYVGGETRIVSVNRDIRYEELMSKMRELYD 73

Query:    70 GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGS-EGTPRLRAFLFPSTPVVVES- 127
             G  VLKYQ   EDLD+LVSV ND+DV +MMEEYD+ GS +G  RLR FLF STP    S 
Sbjct:    74 GAAVLKYQQPDEDLDALVSVVNDDDVTNMMEEYDKLGSGDGFTRLRIFLF-STPEQDGSL 132

Query:   128 -QIPPMDPLAVEQRYIDAINGIVRTT 152
               +   D    E+RY+DA+N ++  T
Sbjct:   133 HYVERDDQRESERRYVDALNNLIEGT 158

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

TAIR|locus:2102787 AT3G46920 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 6.3e-26, P = 6.3e-26
 Identities = 60/137 (43%), Positives = 94/137 (68%)

Query:    19 RVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQL 78
             +VKFLCS+ GKI+PR  DG L+YVGG+TR+V+V + + F E  +K+  +    +V+KYQL
Sbjct:    74 KVKFLCSYNGKIIPRPSDGMLRYVGGQTRIVSVKKNVRFDEFEQKMIQVYGHPVVVKYQL 133

Query:    79 IPEDLDSLVSVRNDEDVKHMMEEYDR---HGSEGTPRLRAFLFPSTPVVVESQIPPM--- 132
               EDLD+LVSV + ED+ +MMEE+++     S+G+ +LR FLF ++   V+     +   
Sbjct:   134 PDEDLDALVSVSSSEDIDNMMEEFEKLVERSSDGSGKLRVFLFDASSSEVDDSFGILEYG 193

Query:   133 DPLAVEQRYIDAINGIV 149
             D + + QRY++A+NG+V
Sbjct:   194 DGVDIGQRYVEAVNGVV 210

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2144721 AT5G09620 "AT5G09620" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
 Identities = 58/112 (51%), Positives = 76/112 (67%)

Query:    19 RVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTI-----DDGDIV 73
             +VK +CS+GGKI PR  D  L YV G+T++++V R I F  L+ KLS +     D G+I 
Sbjct:    39 KVKLMCSYGGKIQPRPHDNQLTYVNGDTKIMSVDRGIRFPALVSKLSAVCSGGGDGGEIS 98

Query:    74 LKYQLIPEDLDSLVSVRNDEDVKHMMEEYDR--HGSEGTPRLRAFLFPSTPV 123
              KYQL  EDLD+L+SV NDED++HMM EYDR    S    R+R FLFPS+P+
Sbjct:    99 FKYQLPGEDLDALISVTNDEDLEHMMHEYDRLLRLSTKPARMRLFLFPSSPI 150

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179366 AT5G64430 "AT5G64430" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 62/140 (44%), Positives = 85/140 (60%)

Query:    19 RVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTI---DDG---DI 72
             +VKF+CS+GGKI PR  D  L YV GET++++V R I F  L  KLST+    DG   ++
Sbjct:    44 KVKFMCSYGGKIQPRPHDNQLTYVNGETKILSVDRGIRFPVLASKLSTVCGGGDGGGGEV 103

Query:    73 VLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDR--HGSEGTPRLRAFLFPSTPVVVESQIP 130
               KYQL  EDLD+L+SV ND+D++HMM EYDR    S    R+R FLFP++         
Sbjct:   104 TFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLLRLSSKPARMRLFLFPASSGFGSQSST 163

Query:   131 PMDPLAVEQRYIDAINGIVR 150
               D      R+++A+N + R
Sbjct:   164 QSD----RDRFVEALNTVPR 179

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2044702 AT2G35050 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 8.6e-23, P = 8.6e-23
 Identities = 59/135 (43%), Positives = 86/135 (63%)

Query:    14 NSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIV 73
             +S  +R KFLCS GGK++PR  D  L+YVGGETR++ + + I+F ELM K+  I      
Sbjct:   171 DSSLNRAKFLCSFGGKVIPRPRDQKLRYVGGETRIIRISKTISFQELMHKMKEIFPEART 230

Query:    74 LKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPVVVESQIPPMD 133
             +KYQL  EDLD+LVSV +DED+++MMEE    G+ G+ + R FLF S+ +     +    
Sbjct:   231 IKYQLPGEDLDALVSVSSDEDLQNMMEECIVFGNGGSEKPRMFLFSSSDIEEAQFVMEHA 290

Query:   134 PLAVEQRYIDAINGI 148
                 E +Y+ A+NG+
Sbjct:   291 EGDSEVQYVVAVNGM 305

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2038836 PDE331 "PIGMENT DEFECTIVE 331" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 68/150 (45%), Positives = 94/150 (62%)

Query:     4 GGGDEALSSLNSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKK 63
             GGG  A+SS      +++F+CS+GG ILPR  D +L Y+GG+TR+V V R  +   L+ +
Sbjct:    65 GGGGSAVSS------KLRFMCSYGGHILPRPHDKSLCYMGGDTRIVVVDRNSSLPSLIAR 118

Query:    64 LS-TIDDG-DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDR--HGSEGT-P-RLRAFL 117
             LS T+ DG    LKYQL  EDLDSL+SV  DED+ +M+EEYDR    S  T P RLR FL
Sbjct:   119 LSNTLLDGRSFTLKYQLPSEDLDSLISVTTDEDLDNMIEEYDRTISASNSTKPSRLRLFL 178

Query:   118 FPSTPVVVESQIPPMDPLAV-EQRYIDAIN 146
             F S P   +S    ++  A  +  +++A+N
Sbjct:   179 FTSKPEATQSMGQILESSAKSDDWFLNALN 208

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2115658 AT4G05150 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 3.6e-22, P = 3.6e-22
 Identities = 68/154 (44%), Positives = 91/154 (59%)

Query:    11 SSLNSPRS------RVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKL 64
             S  +SPRS      RV+F+C+ GG+ILPR  D  L YVGG+ R+VAV R   F+ L+ KL
Sbjct:    44 SLASSPRSEYDSQPRVRFMCTFGGRILPRPPDNQLCYVGGDNRMVAVHRHTTFASLLSKL 103

Query:    65 STIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPR---LRAFLFPS 120
             + +    +I +KYQL  EDLD+L+SV  DEDV++MM+EYDR      PR   LR FLF  
Sbjct:   104 AKLSGKSNISVKYQLPNEDLDALISVSTDEDVENMMDEYDRVAQNQNPRASRLRLFLFTK 163

Query:   121 TPVVVE------SQIPPMDPLAV--EQRYIDAIN 146
                  E      S I  +   +V  EQ ++DA+N
Sbjct:   164 NVAGEEDNDSRASSISSLLDSSVNREQWFLDALN 197

GO:0005634 "nucleus" evidence=ISM

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2033595 AT1G70640 "AT1G70640" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 57/115 (49%), Positives = 76/115 (66%)

Query:    20 VKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGDIV-LKYQL 78
             VKFLCS+GG+I PR  DG L+Y GG+TRV++V R I+F+EL KKL  I    +  L+ QL
Sbjct:     8 VKFLCSYGGRITPRYPDGKLRYQGGDTRVLSVTRAISFTELKKKLGEICGIAVTSLRCQL 67

Query:    79 IPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFP--STPVVVESQIPP 131
               +DLD+LV+VR+DED+K++MEEYD        ++  FL P  ST     S  PP
Sbjct:    68 PTDDLDALVTVRSDEDLKNLMEEYDL-AITAQVKIHVFLSPLKSTRTTANSSPPP 121

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089648 AT3G18230 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 60/149 (40%), Positives = 89/149 (59%)

Query:     4 GGGDEALSSLNSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKK 63
             GG  E L+++  P ++++ +CS GG I+PR  D +L Y GGETR+V V R  + S L  +
Sbjct:    50 GGIPEPLAAV--PGAKLRLMCSFGGHIMPRPHDKSLTYSGGETRIVVVDRRASLSSLRSR 107

Query:    64 LST--IDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTP----RLRAFL 117
             LS+  ++     LKYQL  EDLDSLV++  DED+++M+EEYDR  S  T     RLR FL
Sbjct:   108 LSSMLLNGRSFTLKYQLPSEDLDSLVTITTDEDLENMIEEYDRAASSATATATQRLRLFL 167

Query:   118 FPSTPVVVESQIPPMDPLAVEQRYIDAIN 146
             F +      +    +D    +  ++DA+N
Sbjct:   168 FANKLETAATMGSLLDGTKSDTWFVDALN 196

GO:0009507 "chloroplast" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00035284001 SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (308 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
cd06410	97	cd06410, PB1_UP2, Uncharacterized protein 2	2e-45
smart00666	81	smart00666, PB1, PB1 domain	2e-19
cd05992	81	cd05992, PB1, The PB1 domain is a modular domain m	3e-19
pfam00564	84	pfam00564, PB1, PB1 domain	4e-19

>gnl|CDD|99731 cd06410, PB1_UP2, Uncharacterized protein 2

 Score =  149 bits (378), Expect = 2e-45
 Identities = 61/98 (62%), Positives = 75/98 (76%), Gaps = 3/98 (3%)

Query: 23  LCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTI--DDGDIVLKYQLIP 80
           LCS+GG+ILPR  DG L+YVGGETR+V+V R I+F EL+ KLS +      + LKYQL  
Sbjct: 1   LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPD 60

Query: 81  EDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLF 118
           EDLD+L+SV NDED+K+MMEEYDR  S G+ RLR FLF
Sbjct: 61  EDLDALISVSNDEDLKNMMEEYDRL-SGGSARLRVFLF 97

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. Length = 97

>gnl|CDD|214770 smart00666, PB1, PB1 domain

 Score = 80.7 bits (200), Expect = 2e-19
 Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 10/87 (11%)

Query: 35  VDGNLKYVGGETRVVAVPREINFSELMKKLST---IDDGDIVLKYQLIPEDLDSLVSVRN 91
           VD  L+Y GGETR ++VPR+I+F +L  K++    +D+    LKYQ   ED D LVS+ +
Sbjct: 2   VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ--DEDGD-LVSLTS 57

Query: 92  DEDVKHMMEEYDRHGSEGTPRLRAFLF 118
           DED++  +EEYD  GS    +LR  +F
Sbjct: 58  DEDLEEAIEEYDSLGS---KKLRLHVF 81

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. Length = 81

>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

 Score = 80.4 bits (199), Expect = 3e-19
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 35  VDGNLKYVGGETRVVAVPREINFSELMKKLSTI-DDGDIVLKYQLIPEDLDSLVSVRNDE 93
           V   +KY G   R V V R I+F +L  K++       +  K +   ED D LV++ +DE
Sbjct: 1   VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGD-LVTISSDE 59

Query: 94  DVKHMMEEYDRHGSEGTPRLRAFLF 118
           D++  +EE  R GS    +LR F+F
Sbjct: 60  DLEEAIEEARRSGS---KKLRLFVF 81

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 81

>gnl|CDD|215996 pfam00564, PB1, PB1 domain

 Score = 80.0 bits (198), Expect = 4e-19
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 35  VDGNLKYVGGETRVVAVPREINFSELMKKLS-TIDDGDIVLKYQLIPEDLDSLVSVRNDE 93
           V   L+Y GG  R ++V   I+F EL  K+        +  K +   ED D LVS+ +DE
Sbjct: 2   VRVKLRYGGGIRRFLSVSPGISFEELRSKVEQRFGLDRVDFKLKYPDEDGD-LVSITSDE 60

Query: 94  DVKHMMEEYDRHGSEGTPRLRAFLFPS 120
           D++  +EE    GS     LR  +FP+
Sbjct: 61  DLEEAIEEARSLGS---KTLRLHVFPA 84

Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
cd06410	97	PB1_UP2 Uncharacterized protein 2. The PB1 domain	100.0
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	99.42
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	99.1
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	98.97
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	98.75
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	98.39
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	98.1
cd06405	79	PB1_Mekk2_3 The PB1 domain is present in the two m	98.04
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	98.02
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	97.96
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	97.86
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	97.56
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	97.5
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	96.92
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	96.76
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.73
cd06399	92	PB1_P40 The PB1 domain is essential part of the p4	95.89
cd06411	78	PB1_p51 The PB1 domain is present in the p51 prote	94.41
cd06395	91	PB1_Map2k5 PB1 domain is essential part of the mit	86.78
KOG0695	593	consensus Serine/threonine protein kinase [Signal	84.11

>cd06410 PB1_UP2 Uncharacterized protein 2

Probab=100.00  E-value=4.2e-42  Score=277.75  Aligned_cols=95  Identities=64%  Similarity=1.039  Sum_probs=91.3

Q ss_pred             EeeeCCeeeeCCCCCceeeecCceeEEEecCCCCHHHHHHHHHhhcCCc--eEEEEecCCCCCCceeeccChHHHHHHHH
Q 021168           23 LCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGD--IVLKYQLIPEDLDSLVSVRNDEDVKHMME  100 (316)
Q Consensus        23 lCSyGGrIlPRp~DGkLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~~--~~LKYQLPgEDLDaLISVssDEDL~nMme  100 (316)
                      ||||||||+||+.||+|+|+|||||||+|+|+|+|+||++||+++++..  ++||||||+||||+||||++||||+|||+
T Consensus         1 ~cs~GG~i~pr~~dg~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl~~M~~   80 (97)
T cd06410           1 LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDLKNMME   80 (97)
T ss_pred             CcccCCEEeCcCCCCCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999854  69999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcEEEEEc
Q 021168          101 EYDRHGSEGTPRLRAFLF  118 (316)
Q Consensus       101 EYdrl~~~~s~RLRvFLF  118 (316)
                      ||+++ ..+++|||||||
T Consensus        81 e~~~~-~~~~~rirvflf   97 (97)
T cd06410          81 EYDRL-SGGSARLRVFLF   97 (97)
T ss_pred             hhccc-cCCCceEEEEEC
Confidence            99999 557899999998

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>smart00666 PB1 PB1 domain

Probab=99.42  E-value=1.8e-12  Score=97.72  Aligned_cols=75  Identities=47%  Similarity=0.751  Sum_probs=67.0

Q ss_pred             CceeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcE
Q 021168           37 GNLKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRL  113 (316)
Q Consensus        37 GkLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RL  113 (316)
                      .|++| ||++|++.|+++++|.+|+.|+.+.++.   .+.|||+  +||-| +|++++|+||..||+.+.+..   ...|
T Consensus         4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~--Dedgd-~v~l~sd~Dl~~a~~~~~~~~---~~~l   76 (81)
T smart00666        4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ--DEDGD-LVSLTSDEDLEEAIEEYDSLG---SKKL   76 (81)
T ss_pred             EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE--CCCCC-EEEecCHHHHHHHHHHHHHcC---CceE
Confidence            46788 9999999999999999999999999974   7999999  67756 999999999999999998765   3679


Q ss_pred             EEEEc
Q 021168          114 RAFLF  118 (316)
Q Consensus       114 RvFLF  118 (316)
                      ||++|
T Consensus        77 ~l~v~   81 (81)
T smart00666       77 RLHVF   81 (81)
T ss_pred             EEEeC
Confidence            99886

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=99.10  E-value=4.9e-10  Score=84.39  Aligned_cols=76  Identities=30%  Similarity=0.584  Sum_probs=62.8

Q ss_pred             ceeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEE
Q 021168           38 NLKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLR  114 (316)
Q Consensus        38 kLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLR  114 (316)
                      |++|.|+..|++.++++++|.+|+.++++.++.   .+.|+|.  +|| ..+|+|++|+||..|++++.+..   ..+||
T Consensus         5 K~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~--D~d-gD~V~i~sd~Dl~~a~~~~~~~~---~~~lr   78 (84)
T PF00564_consen    5 KVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK--DED-GDLVTISSDEDLQEAIEQAKESG---SKTLR   78 (84)
T ss_dssp             EEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE--ETT-SSEEEESSHHHHHHHHHHHHHCT---TSCEE
T ss_pred             EEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee--CCC-CCEEEeCCHHHHHHHHHHHHhcC---CCcEE
Confidence            345555444569999999999999999999984   7889998  455 48999999999999999999873   45999


Q ss_pred             EEEcc
Q 021168          115 AFLFP  119 (316)
Q Consensus       115 vFLFp  119 (316)
                      ||+..
T Consensus        79 l~v~~   83 (84)
T PF00564_consen   79 LFVQD   83 (84)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99863

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=98.97  E-value=4.2e-09  Score=78.84  Aligned_cols=74  Identities=39%  Similarity=0.612  Sum_probs=60.2

Q ss_pred             ceeeecCceeEEEec-CCCCHHHHHHHHHhhcCC---ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcE
Q 021168           38 NLKYVGGETRVVAVP-REINFSELMKKLSTIDDG---DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRL  113 (316)
Q Consensus        38 kLrYVGGeTRIVsV~-R~isF~eL~~KLs~l~~~---~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RL  113 (316)
                      |++|- |++|.+.|+ ++++|.+|+++|.+.++.   .+.|||.-  || ..+|+|++|+||+.|++.+.+.   +..+|
T Consensus         4 K~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D--~e-~d~v~l~sd~Dl~~a~~~~~~~---~~~~l   76 (81)
T cd05992           4 KVKYG-GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD--ED-GDLVTISSDEDLEEAIEEARRS---GSKKL   76 (81)
T ss_pred             EEEec-CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC--CC-CCEEEeCCHHHHHHHHHHHhhc---CCccE
Confidence            45555 567777777 999999999999999984   57777774  55 3789999999999999999873   35789


Q ss_pred             EEEEc
Q 021168          114 RAFLF  118 (316)
Q Consensus       114 RvFLF  118 (316)
                      |+|++
T Consensus        77 ~l~v~   81 (81)
T cd05992          77 RLFVF   81 (81)
T ss_pred             EEEeC
Confidence            99875

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=98.75  E-value=8.3e-08  Score=75.92  Aligned_cols=71  Identities=23%  Similarity=0.407  Sum_probs=62.2

Q ss_pred             ecCceeEEEecCCCCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021168           42 VGGETRVVAVPREINFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFL  117 (316)
Q Consensus        42 VGGeTRIVsV~R~isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFL  117 (316)
                      .|||++.+.|+.+++|.+|+.++++.|+    +.++|||.  .|| ...|+++||+||+.-++-|....   ..++|+|+
T Consensus         7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~--Dde-gd~v~ltsd~DL~eai~i~~~~~---~~~v~l~v   80 (82)
T cd06407           7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL--DDD-EEWVLLTCDADLEECIDVYRSSG---SHTIRLLV   80 (82)
T ss_pred             eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE--CCC-CCeEEeecHHHHHHHHHHHHHCC---CCeEEEEe
Confidence            3889999999999999999999999997    36999998  555 88999999999999888887653   58999987


Q ss_pred             c
Q 021168          118 F  118 (316)
Q Consensus       118 F  118 (316)
                      -
T Consensus        81 ~   81 (82)
T cd06407          81 H   81 (82)
T ss_pred             e
Confidence            3

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=98.39  E-value=1.9e-06  Score=69.74  Aligned_cols=72  Identities=10%  Similarity=0.312  Sum_probs=60.9

Q ss_pred             cCceeEEEecCCCCHHHHHHHHHhhcC--CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCC---CCCCcEEEEE
Q 021168           43 GGETRVVAVPREINFSELMKKLSTIDD--GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGS---EGTPRLRAFL  117 (316)
Q Consensus        43 GGeTRIVsV~R~isF~eL~~KLs~l~~--~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~---~~s~RLRvFL  117 (316)
                      +||+|+|.|+.+|+|.+|..|+.+.|+  ..++|||+  +|  ...|+|++++||+--|.-.....+   ..-+|+-+++
T Consensus        10 ~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKyk--DE--GD~iti~sq~DLd~Ai~~a~~~~~~~~~~~~~~e~w~   85 (86)
T cd06408          10 QDDTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMK--DD--GDMITMGDQDDLDMAIDTARSEARKQGSDMGKLEIWV   85 (86)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEE--cC--CCCccccCHHHHHHHHHHHHHHHHhhcccccceeeec
Confidence            789999999999999999999999998  68999999  34  789999999999999988765332   2237888876


Q ss_pred             c
Q 021168          118 F  118 (316)
Q Consensus       118 F  118 (316)
                      +
T Consensus        86 ~   86 (86)
T cd06408          86 M   86 (86)
T ss_pred             C
Confidence            4

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=98.10  E-value=3.3e-05  Score=62.47  Aligned_cols=74  Identities=26%  Similarity=0.457  Sum_probs=58.5

Q ss_pred             eeeecCceeEEEecC-----CCCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCC
Q 021168           39 LKYVGGETRVVAVPR-----EINFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEG  109 (316)
Q Consensus        39 LrYVGGeTRIVsV~R-----~isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~  109 (316)
                      ..| ||++|-+.++.     +++|.+|..|+++.++    ..+.|||.  .|| ..+|.++||+||+--|+...+...  
T Consensus         5 v~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~--Ded-gd~V~l~~D~DL~~a~~~~~~~~~--   78 (91)
T cd06398           5 VKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT--DED-GDVVTLVDDNDLTDAIQYFCSGSR--   78 (91)
T ss_pred             EEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE--CCC-CCEEEEccHHHHHHHHHHHhccCC--
Confidence            445 88999999995     7999999999999986    37899998  443 579999999999988887544332  


Q ss_pred             CCcEEEEEc
Q 021168          110 TPRLRAFLF  118 (316)
Q Consensus       110 s~RLRvFLF  118 (316)
                      ..-||+++-
T Consensus        79 ~~~lrl~v~   87 (91)
T cd06398          79 LNPLRIDVT   87 (91)
T ss_pred             CceEEEEEE
Confidence            456777653

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development

Probab=98.04  E-value=2.1e-05  Score=63.15  Aligned_cols=70  Identities=31%  Similarity=0.522  Sum_probs=59.9

Q ss_pred             cCceeEEEecCCCCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEc
Q 021168           43 GGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLF  118 (316)
Q Consensus        43 GGeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLF  118 (316)
                      -||.|||.++|.+.|.||..|+.+.||+.+.+-|-. .|   -||-+.|-|||+.-||-.|+....  .-||+.|-
T Consensus         8 ~gEKRIi~f~RPvkf~dl~~kv~~afGq~mdl~ytn-~e---L~iPl~~Q~DLDkAie~ld~s~~~--ksLRilL~   77 (79)
T cd06405           8 NGEKRIIQFPRPVKFKDLQQKVTTAFGQPMDLHYTN-NE---LLIPLKNQEDLDRAIELLDRSPHM--KSLRILLS   77 (79)
T ss_pred             cCceEEEecCCCccHHHHHHHHHHHhCCeeeEEEec-cc---EEEeccCHHHHHHHHHHHccCccc--cceeEeEe
Confidence            489999999999999999999999999999999985 32   799999999999999999984332  34666653

The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=98.02  E-value=4.6e-05  Score=61.71  Aligned_cols=72  Identities=15%  Similarity=0.369  Sum_probs=60.3

Q ss_pred             ecCceeEEEecCCCCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021168           42 VGGETRVVAVPREINFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFL  117 (316)
Q Consensus        42 VGGeTRIVsV~R~isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFL  117 (316)
                      -+|+-+|..++.+++|.+|.+|+.++|.    +++++||-  +|| .-+|+|++|++|+.-+.-|.....   .-|-+-+
T Consensus         7 y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~--DEE-GDp~tiSS~~EL~EA~rl~~~n~~---~~l~ihv   80 (83)
T cd06404           7 YNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWI--DEE-GDPCTISSQMELEEAFRLYELNKD---SELNIHV   80 (83)
T ss_pred             ecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEE--CCC-CCceeecCHHHHHHHHHHHHhcCc---ccEEEEe
Confidence            4788899999999999999999999996    58999998  444 458999999999988888876543   4677777


Q ss_pred             cc
Q 021168          118 FP  119 (316)
Q Consensus       118 Fp  119 (316)
                      ||
T Consensus        81 fp   82 (83)
T cd06404          81 FP   82 (83)
T ss_pred             cC
Confidence            76

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=97.96  E-value=2.9e-05  Score=62.55  Aligned_cols=53  Identities=23%  Similarity=0.536  Sum_probs=45.5

Q ss_pred             cCceeEEEecC-CCCHHHHHHHHHhhcC------CceEEEEecCCCCCCceeeccChHHHHHH
Q 021168           43 GGETRVVAVPR-EINFSELMKKLSTIDD------GDIVLKYQLIPEDLDSLVSVRNDEDVKHM   98 (316)
Q Consensus        43 GGeTRIVsV~R-~isF~eL~~KLs~l~~------~~~~LKYQLPgEDLDaLISVssDEDL~nM   98 (316)
                      |||.|.+.++. +++|.+|+..+..+|.      .++.|||.=  || ..||+|++++||.--
T Consensus         8 g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD--~d-GDlVTIts~~dL~~A   67 (81)
T cd06401           8 GDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKD--ED-GDLITIFDSSDLSFA   67 (81)
T ss_pred             CCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEEC--CC-CCEEEeccHHHHHHH
Confidence            89999999998 5899999999988775      379999984  33 569999999999765

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=97.86  E-value=0.00012  Score=58.88  Aligned_cols=69  Identities=19%  Similarity=0.289  Sum_probs=57.3

Q ss_pred             cCceeEEEecC--CCCHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEc
Q 021168           43 GGETRVVAVPR--EINFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLF  118 (316)
Q Consensus        43 GGeTRIVsV~R--~isF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLF  118 (316)
                      |||++.+.++.  +++|.+|.+.+++.|+ ..+.|||-  +|| .--|+|+||.||+.-++-|.+    ++..||+|+.
T Consensus         8 ~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~~f~lKYl--Dde-~e~v~lssd~eLeE~~rl~~~----~~~~l~~~v~   79 (81)
T cd06396           8 NGESQSFLVSDSENTTWASVEAMVKVSFGLNDIQIKYV--DEE-NEEVSVNSQGEYEEALKSAVR----QGNLLQMNVY   79 (81)
T ss_pred             CCeEEEEEecCCCCCCHHHHHHHHHHHhCCCcceeEEE--cCC-CCEEEEEchhhHHHHHHHHHh----CCCEEEEEEe
Confidence            68889999999  8899999999999998 57999997  444 678999999999766666554    3468898874

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=97.56  E-value=0.00025  Score=57.47  Aligned_cols=59  Identities=17%  Similarity=0.345  Sum_probs=48.9

Q ss_pred             cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEecCCCCCCceeeccChHHHHHHHHHHHh
Q 021168           43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDR  104 (316)
Q Consensus        43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdr  104 (316)
                      +|+||=+++++.-+|.+|.+||..+++-   ++.|+|-  .|| .-+|++++|+||+..+-...+
T Consensus         8 ~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi--DeD-~D~ITlssd~eL~d~~~~~~~   69 (82)
T cd06397           8 LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI--DND-NDEITLSSNKELQDFYRLSHR   69 (82)
T ss_pred             CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE--cCC-CCEEEecchHHHHHHHHhccc
Confidence            5677777799999999999999999982   6899997  454 369999999999987765443

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=97.50  E-value=0.0006  Score=55.36  Aligned_cols=64  Identities=19%  Similarity=0.401  Sum_probs=51.3

Q ss_pred             ceeEEEecCC--CCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021168           45 ETRVVAVPRE--INFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFL  117 (316)
Q Consensus        45 eTRIVsV~R~--isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFL  117 (316)
                      |-|-++++..  ++|.+|+.++.++|.    ..++|||.  +|| .-||+|+|||||.--+..-.      .+-+|||+
T Consensus        15 EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~--Dee-GDlvtIssdeEL~~A~~~~~------~~~~RlyI   84 (87)
T cd06402          15 EIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWK--DEE-GDLVAFSSDEELVMALGSLN------DDTFRIYI   84 (87)
T ss_pred             ceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEE--CCC-CCEEeecCHHHHHHHHHcCC------CCcEEEEE
Confidence            5677888654  689999999999984    48999998  444 45999999999987776543      36789887

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=96.92  E-value=0.0029  Score=51.02  Aligned_cols=68  Identities=19%  Similarity=0.335  Sum_probs=52.8

Q ss_pred             ceeeecCceeEEEecCCCCHHHHHHHHHhhcC---CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEE
Q 021168           38 NLKYVGGETRVVAVPREINFSELMKKLSTIDD---GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLR  114 (316)
Q Consensus        38 kLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~---~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLR  114 (316)
                      |++|-+  |-+|.|+++++|++|..||++.+.   ..+.|.|.=  |+=..++.+ +|+||+.++.-=.      ..+|.
T Consensus         6 KV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd--e~s~~~v~l-~d~dle~aws~~~------~~~lT   74 (80)
T cd06406           6 KVHFKY--TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS--EASGEDVIL-SDTNMEDVWSQAK------DGCLT   74 (80)
T ss_pred             EEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc--CCCCCccCc-ChHHHHHHHHhhc------CCeEE
Confidence            466776  999999999999999999998775   467889984  555567888 8999998876432      35555


Q ss_pred             EE
Q 021168          115 AF  116 (316)
Q Consensus       115 vF  116 (316)
                      ++
T Consensus        75 Lw   76 (80)
T cd06406          75 LW   76 (80)
T ss_pred             EE
Confidence            54

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=96.76  E-value=0.012  Score=47.88  Aligned_cols=70  Identities=19%  Similarity=0.200  Sum_probs=56.8

Q ss_pred             cCceeEEEecCCCCHHHHHHHHHhhcCC------ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEE
Q 021168           43 GGETRVVAVPREINFSELMKKLSTIDDG------DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAF  116 (316)
Q Consensus        43 GGeTRIVsV~R~isF~eL~~KLs~l~~~------~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvF  116 (316)
                      .|.++=+.+.-+.++.+|++.+++-++.      .+.|||-   .|-.-.|++|||.||..-|+-+....   ..+||+|
T Consensus         9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl---DDEgD~VllT~D~DL~e~v~iar~~g---~~~v~L~   82 (86)
T cd06409           9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV---DDEGDIVLITSDSDLVAAVLVARSAG---LKKLDLH   82 (86)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE---cCCCCEEEEeccchHHHHHHHHHHcC---CCEEEEE
Confidence            5777778888899999999999998873      4678996   34467999999999999998877654   4789988


Q ss_pred             Ec
Q 021168          117 LF  118 (316)
Q Consensus       117 LF  118 (316)
                      |-
T Consensus        83 v~   84 (86)
T cd06409          83 LH   84 (86)
T ss_pred             Ee
Confidence            74

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.73  E-value=0.0086  Score=48.53  Aligned_cols=67  Identities=24%  Similarity=0.425  Sum_probs=55.2

Q ss_pred             eecCceeEEEecCC--CCHHHHHHHHHhhcC---CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEE
Q 021168           41 YVGGETRVVAVPRE--INFSELMKKLSTIDD---GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRA  115 (316)
Q Consensus        41 YVGGeTRIVsV~R~--isF~eL~~KLs~l~~---~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRv  115 (316)
                      +-++|+|=.+++|+  .+|.||.+.|..+..   .++.|+|.=|..|   |+.|+|||.+..-+.       ...+-|||
T Consensus         6 kfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gD---LLPInNDdNf~kAls-------sa~plLRl   75 (80)
T cd06403           6 KFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGD---LLPINNDDNFLKALS-------SANPLLRI   75 (80)
T ss_pred             ccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCC---EecccCcHHHHHHHH-------cCCCceEE
Confidence            45889999999998  899999999998874   5899999987544   899999998776554       12578999


Q ss_pred             EE
Q 021168          116 FL  117 (316)
Q Consensus       116 FL  117 (316)
                      |+
T Consensus        76 ~i   77 (80)
T cd06403          76 FI   77 (80)
T ss_pred             EE
Confidence            87

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis

Probab=95.89  E-value=0.031  Score=46.38  Aligned_cols=61  Identities=25%  Similarity=0.299  Sum_probs=52.3

Q ss_pred             cCceeEEEecCCC----CHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcC
Q 021168           43 GGETRVVAVPREI----NFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHG  106 (316)
Q Consensus        43 GGeTRIVsV~R~i----sF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~  106 (316)
                      |=+||=|.|..++    +|.||...++..|. .+++|.|+=+..|   ||-+-+|||++=||+|-..+.
T Consensus        12 ~~~~rdi~vee~l~~~P~~kdLl~lmr~~f~~~dIaLNYrD~EGD---LIRllddeDv~LMV~~~r~~~   77 (92)
T cd06399          12 ISTIRDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGD---LIRLLSDEDVALMVRQSRGLP   77 (92)
T ss_pred             CccccceEeecccccCccHHHHHHHHHHHhchhheeeeeecCCCC---EEEEcchhhHHHHHHHHhcCC
Confidence            5567889998887    59999999999997 5899999976655   899999999999999987664

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w

>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein

Probab=94.41  E-value=0.15  Score=41.21  Aligned_cols=54  Identities=24%  Similarity=0.272  Sum_probs=45.7

Q ss_pred             eeEEEecCCCCHHHHHHHHHhhcC---CceEEEEecCCCCCCceeeccChHHHHHHHH
Q 021168           46 TRVVAVPREINFSELMKKLSTIDD---GDIVLKYQLIPEDLDSLVSVRNDEDVKHMME  100 (316)
Q Consensus        46 TRIVsV~R~isF~eL~~KLs~l~~---~~~~LKYQLPgEDLDaLISVssDEDL~nMme  100 (316)
                      |-+|.|+|..++++|..+|++.+.   ....|-|.-|+++ ..||-++.+||++.+..
T Consensus         8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~-~~~v~l~~e~~me~aW~   64 (78)
T cd06411           8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGED-GHWVPISGEESLQRAWQ   64 (78)
T ss_pred             EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCC-ccEeecCcchHHHHHHH
Confidence            778999999999999999999887   4688999987754 37788998999887754

p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo

>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development

Probab=86.78  E-value=1.6  Score=36.31  Aligned_cols=50  Identities=22%  Similarity=0.436  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHhhcCC--ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhc
Q 021168           53 REINFSELMKKLSTIDDG--DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRH  105 (316)
Q Consensus        53 R~isF~eL~~KLs~l~~~--~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl  105 (316)
                      ..++|.|+..-++..+..  ...+.|.  +||- -=|+|.+||+++.||.-|..+
T Consensus        21 ~~L~F~DvL~~I~~vlp~aT~tAFeYE--DE~g-DRITVRSDeEm~AMlsyy~~~   72 (91)
T cd06395          21 PQLLFRDVLDVIGQVLPEATTTAFEYE--DEDG-DRITVRSDEEMKAMLSYYCST   72 (91)
T ss_pred             ccccHHHHHHHHHHhcccccccceeec--cccC-CeeEecchHHHHHHHHHHHHH
Confidence            568999999999998863  3457775  5664 469999999999999998764

The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=84.11  E-value=5.4  Score=41.11  Aligned_cols=84  Identities=24%  Similarity=0.367  Sum_probs=63.5

Q ss_pred             ccEEEEeeeCCeeeeCCCCCceeeecCceeEEEecCCCCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChH
Q 021168           18 SRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDE   93 (316)
Q Consensus        18 ~kVKllCSyGGrIlPRp~DGkLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDE   93 (316)
                      .+||+---|+|.|                -|..++..++|.+|...+..+|.    +++++|+-  +||-| =|+|++.-
T Consensus        14 ~~vrlka~y~g~i----------------~i~~~~p~~~~e~~~~~vrd~c~~h~~q~~t~kwi--deegd-p~tv~sqm   74 (593)
T KOG0695|consen   14 GRVRLKAHYGGDI----------------FITSVDPATTFEELCEEVRDMCRLHQQQPLTLKWI--DEEGD-PCTVSSQM   74 (593)
T ss_pred             ccEEEEEeecCcE----------------EEEeccCcccHHHHHHHHHHHHHHhhcCCceeEee--cCCCC-cceechhh
Confidence            3677766666555                57889999999999999999996    58999996  56644 58999988


Q ss_pred             HHHHHHHHHHhcCCCCCCcEEEEEccCCCc
Q 021168           94 DVKHMMEEYDRHGSEGTPRLRAFLFPSTPV  123 (316)
Q Consensus        94 DL~nMmeEYdrl~~~~s~RLRvFLFp~~p~  123 (316)
                      +|+.-+.-|..   .+..-|-+-+||.+|.
T Consensus        75 eleea~r~~~~---~~d~el~ihvf~~~pe  101 (593)
T KOG0695|consen   75 ELEEAFRLARQ---CRDEELIIHVFPSTPE  101 (593)
T ss_pred             hHHHHHHHHHh---ccccceEEEEccCCCC
Confidence            87665554442   2347888999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 38/246 (15%), Positives = 69/246 (28%), Gaps = 84/246 (34%)

Query: 70  GDIVLKY-QLIPEDL------DSLVSVRNDEDVKHMMEEYDRHGSEGTPRL--------- 113
            DI+  +     ++       D   S+ + E++ H++   D     GT RL         
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA--VSGTLRLFWTLLSKQE 76

Query: 114 ---RAFL---------FPSTPVVVESQIPPMDPLAVEQRYIDAINGIVRTTTNG------ 155
              + F+         F  +P+  E + P M      + YI+  +   R   +       
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM----TRMYIEQRD---RLYNDNQVFAKY 129

Query: 156 ---RLTPIKATRSSCLSSACSSP-----------KSGSPDSMAVESMPHESIL--MD--- 196
              RL P    R   L     +            K+     +A++      +   MD   
Sbjct: 130 NVSRLQPYLKLR-QALLELRPAKNVLIDGVLGSGKT----WVALDVCLSYKVQCKMDFKI 184

Query: 197 -----GYQNS-RLSMHKVQSSPSLYNLSNPHLQSSSVSPHHFYQNPQHYYQ-----NHHQ 245
                   NS    +  +Q    L    +P+  S      H        +          
Sbjct: 185 FWLNLKNCNSPETVLEMLQ---KLLYQIDPNWTS---RSDHSSNIKLRIHSIQAELRRLL 238

Query: 246 PHPPYQ 251
              PY+
Sbjct: 239 KSKPYE 244

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
2cu1_A	103	Mitogen-activated protein kinase kinase kinase 2;	99.55
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	98.86
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	98.19
2jrh_A	94	Mitogen-activated protein kinase kinase kinase 3;	98.12
1pqs_A	77	Cell division control protein 24; alpha and beta p	98.1
2c60_A	111	Human mitogen-activated protein kinase kinase kina	98.01
2npt_B	100	Mitogen-activated protein kinase kinase kinase 2;	97.98
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	97.96
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	97.89
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	97.28
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	97.26
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	97.12
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.92
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	96.61
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	96.09
2npt_A	106	Dual specificity mitogen-activated protein kinase;	88.55
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	82.29

>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=99.55  E-value=2.7e-14  Score=117.05  Aligned_cols=75  Identities=20%  Similarity=0.352  Sum_probs=68.0

Q ss_pred             ecCceeEEEecCCCCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEccCC
Q 021168           42 VGGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPST  121 (316)
Q Consensus        42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp~~  121 (316)
                      .+||+|||.|+|.|+|.||.+|+.++||+.+.|.|+    +++.||+++|+|||++.||+|||....  .-||+||-+.+
T Consensus        15 ~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~----n~EllIpl~sQeDLDkaIellDrss~~--kSLrIlL~~~~   88 (103)
T 2cu1_A           15 HRGEKRILQFPRPVKLEDLRSKAKIAFGQSMDLHYT----NNELVIPLTTQDDLDKAVELLDRSIHM--KSLKILLVING   88 (103)
T ss_dssp             ETTEEEEEEEESSCCHHHHHHHHHHHHSSCEEEEEC----SSSSCEECCSHHHHHHHHHHHHHCSSC--CSEEEEEEECC
T ss_pred             ecCeEEEEeccCCccHHHHHHHHHHHhCCeeeEEEe----cceEEEeccCHHHHHHHHHHHccCCcc--cceEEEEecCC
Confidence            478999999999999999999999999999999999    889999999999999999999998653  44677888765


Q ss_pred             C
Q 021168          122 P  122 (316)
Q Consensus       122 p  122 (316)
                      .
T Consensus        89 ~   89 (103)
T 2cu1_A           89 S   89 (103)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=98.86  E-value=1.3e-08  Score=81.03  Aligned_cols=70  Identities=16%  Similarity=0.329  Sum_probs=62.8

Q ss_pred             CceeEEEecCCCCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEcc
Q 021168           44 GETRVVAVPREINFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFP  119 (316)
Q Consensus        44 GeTRIVsV~R~isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp  119 (316)
                      |+.|++.|+.+|+|.+|..||.++|+    ..++|||-  +|| ..+|+|++|+||+..|.-|+...   ..+|.+.+||
T Consensus        15 gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~--DEe-GD~itisSd~EL~eAl~l~~~n~---~~~l~ihvf~   88 (89)
T 1vd2_A           15 GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI--DEE-GDPCTVSSQLELEEAFRLYELNK---DSELLIHVFP   88 (89)
T ss_dssp             SCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC--CSS-SCCEECCSHHHHHHHHHHHHHTS---CCCEEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE--CCC-CCcccccCHHHHHHHHHHHHccC---CCCEEEEEcc
Confidence            45789999999999999999999997    46999998  676 88999999999999999998765   4789999997

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=98.19  E-value=7.5e-06  Score=66.53  Aligned_cols=69  Identities=25%  Similarity=0.292  Sum_probs=57.0

Q ss_pred             CceeEEEecCCCCHHHHHHHHHhhcC--------CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEE
Q 021168           44 GETRVVAVPREINFSELMKKLSTIDD--------GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRA  115 (316)
Q Consensus        44 GeTRIVsV~R~isF~eL~~KLs~l~~--------~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRv  115 (316)
                      ++++.|.|+.+|+|.+|..|+.+.++        ..+.||||  +|| ...|++.+||||+-.+++.....   ..+|.+
T Consensus        22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYk--DEd-GD~Vtl~sddDl~~A~e~~~e~~---~~~l~I   95 (98)
T 1q1o_A           22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DED-GDFVVLGSDEDWNVAKEMLAENN---EKFLNI   95 (98)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEE--CSS-SCEEEECSHHHHHHHHHHHHHTT---CCEEEE
T ss_pred             CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEE--cCC-CCEEEEcCHHHHHHHHHHHHhhh---cCeEEE
Confidence            68899999999999999999987665        22689999  554 48999999999999999886553   468887


Q ss_pred             EEc
Q 021168          116 FLF  118 (316)
Q Consensus       116 FLF  118 (316)
                      +++
T Consensus        96 wv~   98 (98)
T 1q1o_A           96 RLY   98 (98)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            764

>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A

Probab=98.12  E-value=1.8e-05  Score=64.15  Aligned_cols=73  Identities=23%  Similarity=0.474  Sum_probs=63.7

Q ss_pred             cCceeEEEecCCCCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEccCC
Q 021168           43 GGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPST  121 (316)
Q Consensus        43 GGeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp~~  121 (316)
                      -||.|||-++|.++|.||.+|+...||+.+.|-|-    +-.-+|-+.|-|||+.-||-.||-..-  .-||+.|....
T Consensus        12 ~gEKRIi~f~RPvkf~dl~qkv~~afGq~ldl~y~----nnEL~iPL~~Q~DLDkAvelLDrs~~m--kSLRIlL~~~~   84 (94)
T 2jrh_A           12 NGERRIIAFSRPVKYEDVEHKVTTVFGQPLDLHYM----NNELSILLKNQDDLDKAIDILDRSSSM--KSLRILLLSQD   84 (94)
T ss_dssp             TTEEEEEEECSSCCHHHHHHHHHHHHCSSEEEEEE----CSSCEEECCSHHHHHHHHHHHHHSTTT--TEEEEEEEECS
T ss_pred             cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe----cceeEEeccCHHHHHHHHHHhccCccc--cceEEEEEcCC
Confidence            38999999999999999999999999999999998    235799999999999999999987653  35788887654

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=98.10  E-value=6.4e-06  Score=63.99  Aligned_cols=68  Identities=25%  Similarity=0.295  Sum_probs=57.8

Q ss_pred             ceeEEEecCCCCHHHHHHHHHhhcC--------CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEE
Q 021168           45 ETRVVAVPREINFSELMKKLSTIDD--------GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAF  116 (316)
Q Consensus        45 eTRIVsV~R~isF~eL~~KLs~l~~--------~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvF  116 (316)
                      +++.|.|+.+|+|.+|..|+.+.++        ..+.||||  .|| ...|++.+||||+--++......   .++|.|+
T Consensus         2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk--DEd-GD~Vti~sddDl~~A~~~~~~~~---~~~leiW   75 (77)
T 1pqs_A            2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DED-GDFVVLGSDEDWNVAKEMLAENN---EKFLNIR   75 (77)
T ss_dssp             CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE--ETT-TEEEECCSTTHHHHHHHHHHHHC---CCEEEEE
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEE--cCC-CCEEEEcCHHHHHHHHHHHHhhh---cCeEEEE
Confidence            6899999999999999999998876        34789999  565 68999999999999888775543   4788888


Q ss_pred             Ec
Q 021168          117 LF  118 (316)
Q Consensus       117 LF  118 (316)
                      +|
T Consensus        76 v~   77 (77)
T 1pqs_A           76 LY   77 (77)
T ss_dssp             CC
T ss_pred             EC
Confidence            76

>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B

Probab=98.01  E-value=2.6e-05  Score=64.66  Aligned_cols=71  Identities=24%  Similarity=0.484  Sum_probs=61.6

Q ss_pred             cCceeEEEecCCCCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEcc
Q 021168           43 GGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFP  119 (316)
Q Consensus        43 GGeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp  119 (316)
                      -||.|||-++|.++|.||.+|+...||+.+.|-|-    +-.-+|-+.|-|||+.-||-.||-..-+  -||+.|..
T Consensus        39 ~gEKRIiqf~RPvkf~dl~qkv~~afGq~ldl~y~----nnEL~IPL~~Q~DLDkAvelLDrs~~mk--SLRIlL~~  109 (111)
T 2c60_A           39 NGERRIIAFSRPVKYEDVEHKVTTVFGQPLDLHYM----NNELSILLKNQDDLDKAIDILDRSSSMK--SLRILLLS  109 (111)
T ss_dssp             TTEEEEEEECSSCCHHHHHHHHHHHHSSCCEEEEE----CSSCEEECCSHHHHHHHHHHHHHCSSCC--SEEEEEEC
T ss_pred             cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe----cceEEEecccHHHHHHHHHHhccCcccc--ceEEEEec
Confidence            37999999999999999999999999999999998    3357999999999999999999876534  46777653

>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2

Probab=97.98  E-value=2.7e-05  Score=63.76  Aligned_cols=71  Identities=21%  Similarity=0.378  Sum_probs=61.5

Q ss_pred             cCceeEEEecCCCCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEcc
Q 021168           43 GGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFP  119 (316)
Q Consensus        43 GGeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp  119 (316)
                      -||.|||-++|.+.|.||.+|+...||+.+.|-|-    +-.-+|-+.|-|||+.-||-.||-..-+  -||+.|..
T Consensus        28 ~gEkRIi~f~RPv~f~el~~kv~~afGq~ldl~y~----nnEL~iPL~~Q~DLDkAvelLDrs~~~k--SLrIlL~~   98 (100)
T 2npt_B           28 RGEKRILQFPRPVKLEDLRSKAKIAFGQSMDLHYT----NNELVIPLTTQDDLDKAVELLDRSIHMK--SLKILLVI   98 (100)
T ss_dssp             TTEEEEEEECSSCCHHHHHHHHHHHHTSCEEEEEE----ETTEEEECCCHHHHHHHHHHHHHCSSCC--SEEEEEEE
T ss_pred             cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe----cceeEEecccHHHHHHHHHHhccCcccc--ceEEEEec
Confidence            37999999999999999999999999999999998    2357999999999999999999876544  36776643

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=97.96  E-value=3.4e-05  Score=64.35  Aligned_cols=93  Identities=17%  Similarity=0.189  Sum_probs=63.2

Q ss_pred             CCccccCCCCCCccEEEEeeeCCeeeeCCCCCceeeecCceeEEEecCCC-----------CHHHHHHHHHhhcC----C
Q 021168            6 GDEALSSLNSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREI-----------NFSELMKKLSTIDD----G   70 (316)
Q Consensus         6 ~~~~~~~~~~p~~kVKllCSyGGrIlPRp~DGkLrYVGGeTRIVsV~R~i-----------sF~eL~~KLs~l~~----~   70 (316)
                      .++|.-|..-+...+.+-|-+.|+=.          .+.|.|-++++.+.           +|.+|+.|+.++|.    .
T Consensus         7 ~~~~~~~~~~~~~~l~vKayl~~~~~----------~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~   76 (117)
T 2ktr_A            7 NDGAYEGDELHMGSLTVKAYLLGKEE----------AAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPG   76 (117)
T ss_dssp             -------------CEEEEEEEECSSS----------CEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSS
T ss_pred             CccceeccccccccEEEEEEEecCCC----------CCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCC
Confidence            34566666666667777776666211          46899999998653           99999999999994    4


Q ss_pred             ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021168           71 DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFL  117 (316)
Q Consensus        71 ~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFL  117 (316)
                      .|.|||.  +|| .-||.|++||||+.-+.+-.      ...||||+
T Consensus        77 ~f~l~Yk--DEd-GDlItISsDeEL~~Al~~~~------~~~lRlyV  114 (117)
T 2ktr_A           77 GFQAHYR--AER-GDLVAFSSDEELTMAMSYVK------DDIFRIYI  114 (117)
T ss_dssp             CEEEEEE--CTT-CCEEEECSHHHHHHHHHHCC------SSEEEEEE
T ss_pred             cEEEEEE--CCC-CCEEEecCHHHHHHHHHhcC------CCeEEEEE
Confidence            7999999  555 56999999999998887522      36889987

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=97.89  E-value=3.5e-05  Score=62.64  Aligned_cols=67  Identities=18%  Similarity=0.281  Sum_probs=55.8

Q ss_pred             ecCceeEEEecCC-----------CCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcC
Q 021168           42 VGGETRVVAVPRE-----------INFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHG  106 (316)
Q Consensus        42 VGGeTRIVsV~R~-----------isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~  106 (316)
                      .+.|.|=++++++           .+|.+|+.|+.++|.    ..+.|||.  +|| .-||+|++||||...+.+-.   
T Consensus        18 ~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~--Ded-GDlItiSsDeEL~~Al~~~~---   91 (102)
T 2kkc_A           18 AAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYR--AER-GDLVAFSSDEELTMAMSYVK---   91 (102)
T ss_dssp             CEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTT-CCEEEECSHHHHHHHHHHCC---
T ss_pred             CCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEE--CCC-CCEEEecCHHHHHHHHHhcC---
Confidence            4789999999874           489999999999984    47999999  555 67999999999998887532   


Q ss_pred             CCCCCcEEEEE
Q 021168          107 SEGTPRLRAFL  117 (316)
Q Consensus       107 ~~~s~RLRvFL  117 (316)
                         ..-||||+
T Consensus        92 ---~~~lRlyV   99 (102)
T 2kkc_A           92 ---DDIFRIYI   99 (102)
T ss_dssp             ---SSEEEEEE
T ss_pred             ---CCeEEEEE
Confidence               46889987

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=97.28  E-value=0.0013  Score=52.69  Aligned_cols=69  Identities=16%  Similarity=0.269  Sum_probs=54.7

Q ss_pred             cCceeEEEe--cCCCCHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEc
Q 021168           43 GGETRVVAV--PREINFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLF  118 (316)
Q Consensus        43 GGeTRIVsV--~R~isF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLF  118 (316)
                      .||++.+-|  .|.++|.||.+.+...|+ .++.|||.  +|| +-.|+|+++++++.++.-+.+    ....|++++|
T Consensus        14 ~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~~~ikY~--DEe-nD~v~i~Sq~E~eEAlkva~k----~~n~L~m~v~   85 (87)
T 2bkf_A           14 KNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYL--DEE-NEEVSINSQGEYEEALKMAVK----QGNQLQMQVH   85 (87)
T ss_dssp             TTEEEEEEESCGGGCCHHHHHHHHHHHHTCSSEEEEEE--CTT-SCEEEECSHHHHHHHHHHHHH----TTTEEEEEEE
T ss_pred             cCCeeEEEeccCCCCCHHHHHHHHHHHcCCCceEEEEE--cCC-CCEEEEecHHHHHHHHHHhcc----CCCEEEEEEe
Confidence            467777444  679999999999999999 68999998  566 779999999998887764443    2456888775

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=97.26  E-value=0.00043  Score=54.64  Aligned_cols=69  Identities=17%  Similarity=0.187  Sum_probs=53.8

Q ss_pred             eeeecCceeEEEecCCCCHHHHHHHHHhhcC---CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEE
Q 021168           39 LKYVGGETRVVAVPREINFSELMKKLSTIDD---GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRA  115 (316)
Q Consensus        39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~---~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRv  115 (316)
                      ..|.  +|.+|.|+++++|++|..||++.+.   ..+.|-|.=+  +=..++ +.+||||+.++..   .   ...||.+
T Consensus        10 V~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~--~s~~~v-i~~d~dl~~aw~~---~---~n~~LtL   78 (83)
T 1oey_A           10 VHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR--DSNELV-PLSEDSMKDAWGQ---V---KNYCLTL   78 (83)
T ss_dssp             EESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT--TCSSCE-ECCTTTHHHHHTT---C---BTTEEEE
T ss_pred             EEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC--CCCCee-ccChHHHHHHHHh---c---cCCcEEE
Confidence            3455  7899999999999999999999887   3578999864  446788 9999999988742   1   1357877


Q ss_pred             EEc
Q 021168          116 FLF  118 (316)
Q Consensus       116 FLF  118 (316)
                      +..
T Consensus        79 ~C~   81 (83)
T 1oey_A           79 WCE   81 (83)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            753

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=97.12  E-value=0.0054  Score=50.31  Aligned_cols=70  Identities=16%  Similarity=0.277  Sum_probs=55.5

Q ss_pred             CceeE--EEecCCCCHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEccC
Q 021168           44 GETRV--VAVPREINFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPS  120 (316)
Q Consensus        44 GeTRI--VsV~R~isF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp~  120 (316)
                      ||++.  |+-.|.++|.||.+.+...|+ .++.|||.  +|| +-.|+|+++++++.++.-+.+-    ...|++++|-.
T Consensus        23 ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~~IkY~--DEe-nD~V~i~Sq~E~eEAlkva~k~----~n~L~m~V~~~   95 (101)
T 1wj6_A           23 NEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYL--DEE-NEEVSINSQGEYEEALKMAVKQ----GNQLQMQVHEG   95 (101)
T ss_dssp             TEEEEEEESCTTTSCHHHHHHHHHHHHCCSSBCCEEE--CTT-SCEECCCSHHHHHHHHHHHHHH----TSEEEEECCBC
T ss_pred             CCeeEEEecCCCCCCHHHHHHHHHHHcCCCceEEEEe--cCC-CCEEEEecHHHHHHHHHHhccC----CCEEEEEEeec
Confidence            45555  445779999999999999999 68999998  566 7899999999988887755432    35799988763

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.92  E-value=0.0045  Score=49.27  Aligned_cols=67  Identities=27%  Similarity=0.471  Sum_probs=52.8

Q ss_pred             eecCceeEEEecCC--CCHHHHHHHHHhhcC---CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEE
Q 021168           41 YVGGETRVVAVPRE--INFSELMKKLSTIDD---GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRA  115 (316)
Q Consensus        41 YVGGeTRIVsV~R~--isF~eL~~KLs~l~~---~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRv  115 (316)
                      .-|+|.|=.+++|+  .+|.+|..+|..++.   .++.|+|.=  || ..||.|+|||+|..-+      ...+ +-|||
T Consensus        12 kf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D--~d-GDLlpInnDdnl~~Al------~~a~-plLRl   81 (86)
T 1wmh_B           12 KFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD--AH-GDLLPLTNDDSLHRAL------ASGP-PPLRL   81 (86)
T ss_dssp             EETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC--TT-SCEEECCSHHHHHHHT------TSSS-SCEEE
T ss_pred             ecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC--CC-CCEeeecCHHHHHHHH------HhCC-CcEEE
Confidence            45788899999977  899999999999886   489999993  44 5699999999876433      2222 47898


Q ss_pred             EE
Q 021168          116 FL  117 (316)
Q Consensus       116 FL  117 (316)
                      |+
T Consensus        82 ~I   83 (86)
T 1wmh_B           82 LV   83 (86)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=96.61  E-value=0.0064  Score=50.35  Aligned_cols=70  Identities=26%  Similarity=0.330  Sum_probs=55.6

Q ss_pred             cCceeEEEecCCC----CHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021168           43 GGETRVVAVPREI----NFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFL  117 (316)
Q Consensus        43 GGeTRIVsV~R~i----sF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFL  117 (316)
                      |=.+|=|+|..++    +|.||+..+...|. .+++|+|+=+.   .-||.+.+||||.-||.+=..+.    .+.|  +
T Consensus        17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~~~DIaLNYrD~e---GDLIrilddeDv~lmi~~sr~~~----s~k~--~   87 (107)
T 1oey_J           17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAE---GDLVRLLSDEDVALMVRQARGLP----SQKR--L   87 (107)
T ss_dssp             EEEEEEEEECSCTTCCCCHHHHHHHHHHHHCCSSEEEEEECTT---SCEEECCSHHHHHHHHHHCCCCC----CTTC--B
T ss_pred             CceeeeEEEccccccCCCHHHHHHHHHHHhcccceeeeeecCC---CCEEEEcchHHHHHHHHHhhcCc----cccc--c
Confidence            5567889998887    59999999999997 68999999554   34999999999999999875443    3333  7


Q ss_pred             ccCC
Q 021168          118 FPST  121 (316)
Q Consensus       118 Fp~~  121 (316)
                      ||=+
T Consensus        88 FPWe   91 (107)
T 1oey_J           88 FPWK   91 (107)
T ss_dssp             CSSC
T ss_pred             ccee
Confidence            7754

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=96.09  E-value=0.039  Score=44.05  Aligned_cols=55  Identities=15%  Similarity=0.314  Sum_probs=43.9

Q ss_pred             CceeEEEecCCCCHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHH
Q 021168           44 GETRVVAVPREINFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEE  101 (316)
Q Consensus        44 GeTRIVsV~R~isF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeE  101 (316)
                      ++--+|.||.+|+|++|..||.+-.. .++.+.+-. +|..-.  .|.+|+||..-|+.
T Consensus        21 DDIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~yk-de~~g~--~i~sD~dl~~aiqr   76 (85)
T 1ip9_A           21 DDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKL-FDGSGE--EIKTDSQVSNIIQA   76 (85)
T ss_dssp             TCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECC-SSSCCS--CCCSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhcccceEEEEec-CCCCCC--cccCHHHHHHHHHh
Confidence            45568999999999999999998876 455554444 666656  99999999999875

>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A

Probab=88.55  E-value=1.4  Score=36.19  Aligned_cols=50  Identities=24%  Similarity=0.467  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHhhcCC--ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhc
Q 021168           53 REINFSELMKKLSTIDDG--DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRH  105 (316)
Q Consensus        53 R~isF~eL~~KLs~l~~~--~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl  105 (316)
                      ..++|.++..-+..+...  .-.+.|.  +||-| =|+|.+||+|+.||.-|...
T Consensus        35 ~~L~FrDvL~~I~~vmP~aT~TAFeYE--DE~gD-RITVRSDeE~kAMlsyy~~~   86 (106)
T 2npt_A           35 PQLLFRDVLDVIGQVLPEATTTAFEYE--DEDGD-RITVRSDEEMKAMLSYYYST   86 (106)
T ss_dssp             -CCCHHHHHHHHHHHSTTSCCSEEEEE--CTTSC-EEEECSHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhCccceeeeeeec--cccCC-eeEEcchHHHHHHHHHHHHH
Confidence            678999999999999873  3468887  56644 69999999999999988753

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=82.29  E-value=4.6  Score=30.68  Aligned_cols=41  Identities=22%  Similarity=0.152  Sum_probs=32.3

Q ss_pred             CCCCccEEEEeeeCCeeeeCCCCCceeeecCceeEEEecCCCCHHHHHHHHHhhcCC
Q 021168           14 NSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDG   70 (316)
Q Consensus        14 ~~p~~kVKllCSyGGrIlPRp~DGkLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~   70 (316)
                      ..+...|++.+.++|+.                ..|.|+.+.+..+|+.+|.+..+.
T Consensus        12 ~~~~~~~~i~Vk~~g~~----------------~~i~v~~~~TV~~LK~~I~~~tgi   52 (95)
T 1v86_A           12 GVGKELVDLKIIWNKTK----------------HDVKVPLDSTGSELKQKIHSITGL   52 (95)
T ss_dssp             CCCCCCEEEEEEETTEE----------------EEEEECTTSBHHHHHHHHHHHHCS
T ss_pred             CCCCceEEEEEEECCEE----------------EEEEECCCCcHHHHHHHHHHHHCc
Confidence            34456788888776653                448999999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	98.9
d2c60a1	80	Mitogen-activated protein kinase kinase kinase 3,	98.28
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	98.16
d2nptb1	82	Mitogen-activated protein kinase kinase kinase 2,	98.15
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	96.38
d1wmha_	83	Protein kinase C, iota type {Human (Homo sapiens)	96.2
d1pqsa_	77	Cell division control protein 24, CDC24, C-termina	95.8
d2npta1	105	Mitogen activated protein kinase kinase 5, Map2k5	94.62
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	93.29
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	82.61

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=2.1e-09  Score=81.91  Aligned_cols=68  Identities=15%  Similarity=0.173  Sum_probs=57.5

Q ss_pred             CCccEEEEeeeCCeeeeCCCCCceeeecCceeEEEecCCCCHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHH
Q 021168           16 PRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDED   94 (316)
Q Consensus        16 p~~kVKllCSyGGrIlPRp~DGkLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDED   94 (316)
                      ..++||+-+.|+                +|++++.|+.+++|.+|+.|+.+.++ ..+.|||+  .|| +.+|+++||+|
T Consensus         9 ~~~~ikVKv~~~----------------~D~~~~~l~~~it~~dL~~kI~~rf~~~~~~lkY~--Ded-gd~v~i~sD~D   69 (85)
T d1ip9a_           9 GLKTTKIKFYYK----------------DDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTK--LFD-GSGEEIKTDSQ   69 (85)
T ss_dssp             CCCCEEEEECBT----------------TCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEEC--CSS-SCCSCCCSHHH
T ss_pred             CCCCEEEEEEEC----------------CcEEEEEeCCCCCHHHHHHHHHHHhCCCceEEEEE--cCC-CCEEEEeCHHH
Confidence            345677777664                67899999999999999999999997 68999999  455 67899999999


Q ss_pred             HHHHHHHH
Q 021168           95 VKHMMEEY  102 (316)
Q Consensus        95 L~nMmeEY  102 (316)
                      |+.+|++.
T Consensus        70 l~~ai~~~   77 (85)
T d1ip9a_          70 VSNIIQAK   77 (85)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            99999843

>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen-activated protein kinase kinase kinase 3, MEKK 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.6e-06  Score=65.48  Aligned_cols=70  Identities=24%  Similarity=0.497  Sum_probs=61.9

Q ss_pred             cCceeEEEecCCCCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEc
Q 021168           43 GGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLF  118 (316)
Q Consensus        43 GGeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLF  118 (316)
                      -||.|||.++|.++|.||..|+.+.||+.+.+-|-    +-..+|-++|-+||+.-||-.|+-...++  ||+.|.
T Consensus        10 ~gEkRIi~f~RPv~~~dl~~kv~~afGq~ldl~y~----n~El~IPl~~Q~DLDkAvellDrs~~~ks--LrilL~   79 (80)
T d2c60a1          10 NGERRIIAFSRPVKYEDVEHKVTTVFGQPLDLHYM----NNELSILLKNQDDLDKAIDILDRSSSMKS--LRILLL   79 (80)
T ss_dssp             TTEEEEEEECSSCCHHHHHHHHHHHHSSCCEEEEE----CSSCEEECCSHHHHHHHHHHHHHCSSCCS--EEEEEE
T ss_pred             cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe----cCeEEEecccHHHHHHHHHHHccCcccce--eEEEEe
Confidence            48999999999999999999999999999999998    23568999999999999999998776555  777764

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.9e-06  Score=64.28  Aligned_cols=69  Identities=16%  Similarity=0.266  Sum_probs=53.9

Q ss_pred             cCceeE--EEecCCCCHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEc
Q 021168           43 GGETRV--VAVPREINFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLF  118 (316)
Q Consensus        43 GGeTRI--VsV~R~isF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLF  118 (316)
                      ||||+-  |+++++.+|.+|.++++..|+ .++.|||.  ++| +-.|.++||+||+.-++-..+    ....||++++
T Consensus        12 ~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~~~~lkY~--Ddd-~e~v~l~~d~dl~E~~~~a~~----~~~~irl~v~   83 (85)
T d2bkfa1          12 KNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYL--DEE-NEEVSINSQGEYEEALKMAVK----QGNQLQMQVH   83 (85)
T ss_dssp             TTEEEEEEESCGGGCCHHHHHHHHHHHHTCSSEEEEEE--CTT-SCEEEECSHHHHHHHHHHHHH----TTTEEEEEEE
T ss_pred             CCceEEEEecCCCCCcHHHHHHHHHHhcCcccceEEEE--cCC-CCEEEEecHHHHHHHHHHHhc----CCCEEEEEEe
Confidence            455544  567899999999999999998 67999998  444 679999999999877665443    2357888765

>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen-activated protein kinase kinase kinase 2, MEKK 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=5e-06  Score=64.10  Aligned_cols=69  Identities=22%  Similarity=0.409  Sum_probs=60.8

Q ss_pred             cCceeEEEecCCCCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021168           43 GGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFL  117 (316)
Q Consensus        43 GGeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFL  117 (316)
                      -||.|||.++|.+.|.||..|+.+.||+.+.+-|-    +-.-+|-++|-+||+.-||-.|+-...++  ||+.|
T Consensus        10 ~gEkRIi~f~RPv~~~dl~~kv~~afGq~ldl~y~----n~EL~IPl~~Q~DLDkAvellDrs~~~ks--LrilL   78 (82)
T d2nptb1          10 RGEKRILQFPRPVKLEDLRSKAKIAFGQSMDLHYT----NNELVIPLTTQDDLDKAVELLDRSIHMKS--LKILL   78 (82)
T ss_dssp             TTEEEEEEECSSCCHHHHHHHHHHHHTSCEEEEEE----ETTEEEECCCHHHHHHHHHHHHHCSSCCS--EEEEE
T ss_pred             cCceEEEecCCCccHHHHHHHHHHHhCCeeeEEEe----cCeEEEecccHHHHHHHHHHHccCccccc--eEEEE
Confidence            48999999999999999999999999999999998    22579999999999999999998876566  55554

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0047  Score=49.03  Aligned_cols=56  Identities=27%  Similarity=0.356  Sum_probs=50.7

Q ss_pred             cCceeEEEecCCC----CHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHH
Q 021168           43 GGETRVVAVPREI----NFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEE  101 (316)
Q Consensus        43 GGeTRIVsV~R~i----sF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeE  101 (316)
                      |+.+|=|+|..++    +|.||+..+...|. .+++|.|.=|..|   ||-+-+|||++-||.|
T Consensus        15 ~~~~rDI~veedl~~~P~ykdLl~lmr~~f~~~dIaLNYrD~eGD---LIRllddeDv~LMv~~   75 (105)
T d1oeyj_          15 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGD---LVRLLSDEDVALMVRQ   75 (105)
T ss_dssp             EEEEEEEEECSCTTCCCCHHHHHHHHHHHHCCSSEEEEEECTTSC---EEECCSHHHHHHHHHH
T ss_pred             cceeeeEEEccccccCccHHHHHHHHHHHhccceeEeeeecCCCC---EEEEcchhhHHHHHHH
Confidence            6889999999987    59999999999998 5899999977755   8999999999999988

>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Protein kinase C, iota type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.027  Score=43.02  Aligned_cols=71  Identities=17%  Similarity=0.321  Sum_probs=58.1

Q ss_pred             cCceeEEEecCCCCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEc
Q 021168           43 GGETRVVAVPREINFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLF  118 (316)
Q Consensus        43 GGeTRIVsV~R~isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLF  118 (316)
                      +|+--|..++.+|+|.+|...+.++|+    +.+++|+=  +|+=| =++|+++.+|+.-+--|.....   .-|-+-+|
T Consensus         9 ~G~i~it~~~~~it~e~l~~evr~~C~f~~~q~fT~KWi--DeEGD-PCTISSQmEL~EA~RLye~n~d---seL~iHVF   82 (83)
T d1wmha_           9 RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI--DEEGD-PCTVSSQLELEEAFRLYELNKD---SELLIHVF   82 (83)
T ss_dssp             TTEEEEEEECTTCCHHHHHHHHHHHTTCCTTCCCEEEEE--CTTSC-EEECCSHHHHHHHHHHHHHTTC---SCEEEEEE
T ss_pred             cCeEEEEecCCCccHHHHHHHHHHHhCCCcCCcEEEEEE--cCCCC-ceeeecHHHHHHHHHHHHccCC---cceEEEec
Confidence            556668999999999999999999997    57999997  55544 5899999999999988886643   45666666


Q ss_pred             c
Q 021168          119 P  119 (316)
Q Consensus       119 p  119 (316)
                      |
T Consensus        83 P   83 (83)
T d1wmha_          83 P   83 (83)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Cell division control protein 24, CDC24, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.01  Score=44.90  Aligned_cols=57  Identities=25%  Similarity=0.313  Sum_probs=46.5

Q ss_pred             eEEEecCCCCHHHHHHHHHhhc---CC-----ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcC
Q 021168           47 RVVAVPREINFSELMKKLSTID---DG-----DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHG  106 (316)
Q Consensus        47 RIVsV~R~isF~eL~~KLs~l~---~~-----~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~  106 (316)
                      -.|-|..+|+|.+|..|+.+..   +.     ...||||  .|| ...|.+.+|||++--+|++....
T Consensus         4 fTLvV~~~i~f~~L~~kI~~Kia~~~~~~~~~~~rlrY~--DeD-GD~V~i~sddd~~~a~~~~~e~~   68 (77)
T d1pqsa_           4 FTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DED-GDFVVLGSDEDWNVAKEMLAENN   68 (77)
T ss_dssp             EEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE--ETT-TEEEECCSTTHHHHHHHHHHHHC
T ss_pred             EEEEEEcCcCHHHHHHHHHHHHHhccCCCCCccceEEEE--cCC-CCEEEEeccchHHHHHHHHHhcc
Confidence            4678999999999999997643   31     2479999  476 67899999999999999998765

>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen activated protein kinase kinase 5, Map2k5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.039  Score=43.57  Aligned_cols=54  Identities=24%  Similarity=0.433  Sum_probs=42.3

Q ss_pred             EEecCCCCHHHHHHHHHhhcCC--ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhc
Q 021168           49 VAVPREINFSELMKKLSTIDDG--DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRH  105 (316)
Q Consensus        49 VsV~R~isF~eL~~KLs~l~~~--~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl  105 (316)
                      |.-++.++|.++...++.....  .-.++|.  +||-| =|+|.+||+|+.||.-|...
T Consensus        30 V~~~~~l~F~dvL~~i~q~~p~at~taFEYE--DEdGD-RITVRSDEEl~AMisyy~~~   85 (105)
T d2npta1          30 VHSGPQLLFRDVLDVIGQVLPEATTTAFEYE--DEDGD-RITVRSDEEMKAMLSYYYST   85 (105)
T ss_dssp             ECC--CCCHHHHHHHHHHHSTTSCCSEEEEE--CTTSC-EEEECSHHHHHHHHHHHHHH
T ss_pred             ecCCceeeHHHHHHHHHHhcccccccceeec--cccCC-EeEEccHHHHHHHHHHHHHH
Confidence            3344689999999999998863  4578997  57644 59999999999999998643

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.074  Score=40.29  Aligned_cols=62  Identities=16%  Similarity=0.243  Sum_probs=47.3

Q ss_pred             eeEEEecCCCCHHHHHHHHHhhcC---CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEE
Q 021168           46 TRVVAVPREINFSELMKKLSTIDD---GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAF  116 (316)
Q Consensus        46 TRIVsV~R~isF~eL~~KLs~l~~---~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvF  116 (316)
                      |-+|.|+|..+++.|+.+|++.+.   ....|.|. |.|+ ..||-++ +|+++.+...   .   +..+|+++
T Consensus        15 TVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~-~~~~-~e~v~ls-ee~me~aWs~---v---~~~~LtLw   79 (82)
T d1oeya_          15 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR-PRDS-NELVPLS-EDSMKDAWGQ---V---KNYCLTLW   79 (82)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC-CTTC-SSCEECC-TTTHHHHHTT---C---BTTEEEEE
T ss_pred             EEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec-cCCC-Cceeccc-hHHHHHHHHh---c---cCCeEEEE
Confidence            789999999999999999999887   35789997 5544 6677775 8888777643   1   23566664

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.61  E-value=2  Score=31.31  Aligned_cols=41  Identities=22%  Similarity=0.132  Sum_probs=32.5

Q ss_pred             CCCCccEEEEeeeCCeeeeCCCCCceeeecCceeEEEecCCCCHHHHHHHHHhhcCC
Q 021168           14 NSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDG   70 (316)
Q Consensus        14 ~~p~~kVKllCSyGGrIlPRp~DGkLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~   70 (316)
                      ......|+|-+.|+|+..                -|.|+.+.+..+|+++|.++.+-
T Consensus        12 ~~~~~~i~v~V~~~~k~~----------------~i~v~~~~TV~~LK~~I~~~tgv   52 (95)
T d1v86a_          12 GVGKELVDLKIIWNKTKH----------------DVKVPLDSTGSELKQKIHSITGL   52 (95)
T ss_dssp             CCCCCCEEEEEEETTEEE----------------EEEECTTSBHHHHHHHHHHHHCS
T ss_pred             CCCccEEEEEEEECCEEE----------------EEEECCCCcHHHHHHHHHHHhCC
Confidence            334456888887776544                58999999999999999999873