Citrus Sinensis ID: 021170

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------

MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS

ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHcccccEEEEEEEcccccHHHHccHHHHHHHHHHcccEEEEHHccHHHHHHHcccccHHHHcccHHHHHcccccccccHHHHHHHccHHHHHHHccEEEEEEEEEccccc

cccccccccccccccccHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccEEccHHHHHHHHccccccEEEEEEccccHHEHHHHHHHHHHHHHcccEEEEHHHccHHHHHHHHcccEEEEEccccHEEccccEEEEEcHEEEEEEccHHHHHHHcccEEEEEEEEccccc

meseselvpfpllptpietnyractipyrfptdnpkkptrtEIAWLDLFLNSipsfkkraesdptvpdaHVRAEKFAQRYSEILEDmkkdpethggppdcILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLAScqnlvprpwviddleTFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQfkcdslkigmvkhpevaqflggrlYDCVFKYNEVSS

meseselvpfpllptpietnyrACTIPyrfptdnpkkpTRTEIAWLDLFLNSIPSFkkraesdptvpdahvRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRdifkkvkdeenakaislfgdvvrlndVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS

MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFkvkwskkawkkavIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS

*******VPFPLLPTPIETNYRACTIPYRFPTD*****TRTEIAWLDLFLNSIP********************************************DCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYN****

****SELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPS*******************KFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEV**

MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKK**********AHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS

******LVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNE***

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		316	2.2.26 [Sep-21-2011]
Q949P3		367	Uncharacterized protein A	no	no	1.0	0.861	0.727	1e-151
Q5R5F8		773	Pantothenate kinase 4 OS=	yes	no	0.838	0.342	0.343	9e-41
Q9NVE7		773	Pantothenate kinase 4 OS=	yes	no	0.838	0.342	0.343	2e-40
Q4R4U1		773	Pantothenate kinase 4 OS=	N/A	no	0.838	0.342	0.343	4e-40
Q923S8		773	Pantothenate kinase 4 OS=	yes	no	0.838	0.342	0.337	5e-39
Q80YV4		820	Pantothenate kinase 4 OS=	no	no	0.629	0.242	0.389	3e-28
Q8L5Y9		901	Pantothenate kinase 2 OS=	no	no	0.721	0.253	0.341	5e-28

>sp\|Q949P3\|Y2734_ARATH Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1	Back alignment and function desciption

 Score =  535 bits (1378), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 267/367 (72%), Positives = 292/367 (79%), Gaps = 51/367 (13%)

Query: 1   MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRA 60
           MES+SE+VPFP LP PIE NYRACTIPYRFP+D+PKK T  EI+W+++F NSIPSFKKRA
Sbjct: 1   MESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRA 60

Query: 61  ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIF 120
           ESD TVPDA  RAEKFA+RY+ ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIF
Sbjct: 61  ESDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIF 120

Query: 121 KKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDG 180
           KKVKDEENAKAISLF  VV L+D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DG
Sbjct: 121 KKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDG 180

Query: 181 MSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRR 240
           MSFLASCQNLVPRPWVIDDLE F+ KW  K+WKKAVIFVDNSGADIILGILPFARELLRR
Sbjct: 181 MSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRR 240

Query: 241 GTQ---------------------------------------------------VIDLTA 249
           G Q                                                   VIDL+ 
Sbjct: 241 GAQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSR 300

Query: 250 VSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVF 309
           VSQELAYL+SDADLVI+EGMGRGIETNLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVF
Sbjct: 301 VSQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVF 360

Query: 310 KYNEVSS 316
           K+NEV S
Sbjct: 361 KFNEVQS 367

Arabidopsis thaliana (taxid: 3702)

>sp\|Q5R5F8\|PANK4_PONAB Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=2 SV=1	Back alignment and function description

>sp\|Q9NVE7\|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1	Back alignment and function description

>sp\|Q4R4U1\|PANK4_MACFA Pantothenate kinase 4 OS=Macaca fascicularis GN=PANK4 PE=2 SV=2	Back alignment and function description

>sp\|Q923S8\|PANK4_RAT Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank4 PE=1 SV=1	Back alignment and function description

>sp\|Q80YV4\|PANK4_MOUSE Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=1 SV=2	Back alignment and function description

>sp\|Q8L5Y9\|PANK2_ARATH Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		316
363806824		367	uncharacterized protein LOC100804454 [Gl	1.0	0.861	0.754	1e-156
225428330		367	PREDICTED: uncharacterized protein At2g1	1.0	0.861	0.752	1e-156
297836456		367	hypothetical protein ARALYDRAFT_480618 [	1.0	0.861	0.743	1e-153
297798382		367	hypothetical protein ARALYDRAFT_491111 [	1.0	0.861	0.732	1e-153
18418688		367	uncharacterized protein [Arabidopsis tha	0.993	0.855	0.734	1e-151
21554145		367	unknown [Arabidopsis thaliana]	0.993	0.855	0.734	1e-151
18398388		367	uncharacterized protein [Arabidopsis tha	1.0	0.861	0.727	1e-149
21554574		367	unknown [Arabidopsis thaliana]	1.0	0.861	0.724	1e-149
55670842		367	Chain A, X-Ray Structure Of Gene Product	0.996	0.858	0.726	1e-149
388518505		366	unknown [Lotus japonicus]	0.996	0.860	0.715	1e-148

>gi\|363806824\|ref\|NP_001242288.1\| uncharacterized protein LOC100804454 [Glycine max] gi\|255641170\|gb\|ACU20862.1\| unknown [Glycine max]	Back alignment and taxonomy information

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 277/367 (75%), Positives = 298/367 (81%), Gaps = 51/367 (13%)

Query: 1   MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRA 60
           MES SELV FPLL TPI++NYRACTIPYRFP+DNP+KPT TEI+W+DLFLNSIPSFKKRA
Sbjct: 1   MESASELVEFPLLLTPIDSNYRACTIPYRFPSDNPRKPTPTEISWIDLFLNSIPSFKKRA 60

Query: 61  ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIF 120
           ESD +VPDA  +AEKFAQRY++ILED+KKDPE+HGGPPDCILLCRLRE VLRELGFRDIF
Sbjct: 61  ESDTSVPDAAAKAEKFAQRYADILEDLKKDPESHGGPPDCILLCRLRELVLRELGFRDIF 120

Query: 121 KKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDG 180
           KKVKDEENAKAISL  +VV LND IEDEGKR+E+L+RGIFAGNIFDLGSAQL EVFSKDG
Sbjct: 121 KKVKDEENAKAISLSENVVHLNDAIEDEGKRLENLVRGIFAGNIFDLGSAQLVEVFSKDG 180

Query: 181 MSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRR 240
           MSFLASCQNLVPRPWVIDDL+TFK+KWSK  WKK +IFVDNSGADIILGI+PFARELLRR
Sbjct: 181 MSFLASCQNLVPRPWVIDDLDTFKLKWSKNPWKKVIIFVDNSGADIILGIMPFARELLRR 240

Query: 241 GTQ---------------------------------------------------VIDLTA 249
           G+Q                                                   VIDLT 
Sbjct: 241 GSQVVLAANDLPSINDVTCSELVEIISKLKDEDGQLVGVSTSNLLIANSGNDLPVIDLTR 300

Query: 250 VSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVF 309
           VSQELAYLASDADLV LEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVF
Sbjct: 301 VSQELAYLASDADLVTLEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVF 360

Query: 310 KYNEVSS 316
           KYNEVSS
Sbjct: 361 KYNEVSS 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225428330\|ref\|XP_002283109.1\| PREDICTED: uncharacterized protein At2g17340 [Vitis vinifera] gi\|297744464\|emb\|CBI37726.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297836456\|ref\|XP_002886110.1\| hypothetical protein ARALYDRAFT_480618 [Arabidopsis lyrata subsp. lyrata] gi\|297331950\|gb\|EFH62369.1\| hypothetical protein ARALYDRAFT_480618 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|297798382\|ref\|XP_002867075.1\| hypothetical protein ARALYDRAFT_491111 [Arabidopsis lyrata subsp. lyrata] gi\|297312911\|gb\|EFH43334.1\| hypothetical protein ARALYDRAFT_491111 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|18418688\|ref\|NP_567984.1\| uncharacterized protein [Arabidopsis thaliana] gi\|17063179\|gb\|AAL32984.1\| unknown protein [Arabidopsis thaliana] gi\|23506025\|gb\|AAN28872.1\| At4g35360/F23E12_80 [Arabidopsis thaliana] gi\|332661103\|gb\|AEE86503.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|21554145\|gb\|AAM63225.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|18398388\|ref\|NP_565412.1\| uncharacterized protein [Arabidopsis thaliana] gi\|73921093\|sp\|Q949P3.1\|Y2734_ARATH RecName: Full=Uncharacterized protein At2g17340 gi\|15293087\|gb\|AAK93654.1\| unknown protein [Arabidopsis thaliana] gi\|20465695\|gb\|AAM20316.1\| unknown protein [Arabidopsis thaliana] gi\|330251520\|gb\|AEC06614.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|21554574\|gb\|AAM63619.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|55670842\|pdb\|1XFI\|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g17340 gi\|150261469\|pdb\|2Q40\|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From Arabidopsis Thaliana At2g17340	Back alignment and taxonomy information

>gi\|388518505\|gb\|AFK47314.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		316
TAIR\|locus:2122123		367	AT4G35360 "AT4G35360" [Arabido	0.775	0.667	0.795	2.2e-137
TAIR\|locus:2827544		367	AT2G17340 "AT2G17340" [Arabido	0.775	0.667	0.795	1.4e-135
TAIR\|locus:2827582		361	AT2G17320 "AT2G17320" [Arabido	0.848	0.742	0.665	7.1e-126
UNIPROTKB\|E2QXZ0		773	PANK4 "Uncharacterized protein	0.731	0.298	0.356	4.2e-43
TAIR\|locus:2116490		901	PANK2 "pantothenate kinase 2"	0.629	0.220	0.339	5.6e-43
UNIPROTKB\|I3LPY8		780	PANK4 "Uncharacterized protein	0.731	0.296	0.352	1.9e-42
UNIPROTKB\|E9PHT6		734	PANK4 "Pantothenate kinase 4"	0.629	0.271	0.384	2.3e-42
UNIPROTKB\|Q9NVE7		773	PANK4 "Pantothenate kinase 4"	0.629	0.257	0.384	2.9e-42
UNIPROTKB\|F1MLD0		773	PANK4 "Uncharacterized protein	0.731	0.298	0.352	2.6e-41
RGD\|628857		773	Pank4 "pantothenate kinase 4"	0.731	0.298	0.356	9.4e-41

TAIR\|locus:2122123 AT4G35360 "AT4G35360" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1025 (365.9 bits), Expect = 2.2e-137, Sum P(2) = 2.2e-137
 Identities = 195/245 (79%), Positives = 217/245 (88%)

Query:     1 MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRA 60
             MES+SE+V  PLLPTPIE+NYRACTIPYRFP+DNP+K T TEI+W+DLF NSIPSFK+RA
Sbjct:     1 MESDSEMVALPLLPTPIESNYRACTIPYRFPSDNPRKATPTEISWIDLFSNSIPSFKERA 60

Query:    61 ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIF 120
             ESD TVPDA VRAEKFA+RY+EILED+KKDPE+HGGPPDCILLCR+RE +LRELGFRDIF
Sbjct:    61 ESDTTVPDAPVRAEKFAKRYAEILEDLKKDPESHGGPPDCILLCRIRELILRELGFRDIF 120

Query:   121 KKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDG 180
             KKVKDEENAKAISLF +VVRL+D I DEGKR+E+L+RGIFAGNIFDLGSAQLAEVFSKDG
Sbjct:   121 KKVKDEENAKAISLFPEVVRLSDAINDEGKRIENLVRGIFAGNIFDLGSAQLAEVFSKDG 180

Query:   181 MSFLASCQNLVPRPWVIDDLETFXXXXXXXXXXXXXIFVDNSGADIILGILPFARELLRR 240
             MSFLASCQNLV RPWVIDDL+ F             IFVDNSGADIILGILPFARE+LR 
Sbjct:   181 MSFLASCQNLVSRPWVIDDLDNFQARWLKKPWKKAVIFVDNSGADIILGILPFAREMLRL 240

Query:   241 GTQVI 245
             G QV+
Sbjct:   241 GMQVV 245

GO:0004594 "pantothenate kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

TAIR\|locus:2827544 AT2G17340 "AT2G17340" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2827582 AT2G17320 "AT2G17320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QXZ0 PANK4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

TAIR\|locus:2116490 PANK2 "pantothenate kinase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LPY8 PANK4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PHT6 PANK4 "Pantothenate kinase 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NVE7 PANK4 "Pantothenate kinase 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MLD0 PANK4 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|628857 Pank4 "pantothenate kinase 4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q949P3	Y2734_ARATH	No assigned EC number	0.7275	1.0	0.8610	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036290001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (367 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027960001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (233 aa)	•	0.542
	GSVIVG00021938001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (174 aa)	•	0.520

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		316
pfam01937		315	pfam01937, DUF89, Protein of unknown function DUF8	1e-52
PLN02902		876	PLN02902, PLN02902, pantothenate kinase	3e-36
PLN02902		876	PLN02902, PLN02902, pantothenate kinase	4e-20

>gnl\|CDD\|216798 pfam01937, DUF89, Protein of unknown function DUF89	Back alignment and domain information

 Score =  175 bits (445), Expect = 1e-52
 Identities = 68/319 (21%), Positives = 112/319 (35%), Gaps = 64/319 (20%)

Query: 49  FLNSIPSFKKRAESD-PTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLR 107
               +P    +   D     DA    +K     SE+  +++ DP      P     C L 
Sbjct: 2   APERLPCILTQVIDDLELATDAEEELKKIIGELSELKAELQTDPPLPPLAPWLFAECYLY 61

Query: 108 EQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDL 167
            ++L   G  D FK+ K+  N KA++   ++    + +EDE +  + L++    GNI DL
Sbjct: 62  RRLLEAFGNYDPFKEQKELSNEKALAAVPELAERLEELEDEEELFKELLKISLWGNIIDL 121

Query: 168 GSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADII 227
           G     E   +D     +  +  + RP ++DD +    +      K+    +DN+G +++
Sbjct: 122 GLLAG-EDSQED---QESELRKALERPILVDDTDALWERLKGSRAKRVDYVLDNAGFELV 177

Query: 228 LGIL---------------------PF--------ARELLRR------------------ 240
             +L                     PF        A  LL +                  
Sbjct: 178 FDLLLAEELLRSGLATKVVLHVKGIPFVNDVTMEDAEWLLEQLADHSALGAGLDELLKLG 237

Query: 241 ---------GTQVIDLTAVSQELAYLASDADLVILEGMG--RGIETNLYAQFKCDSLKIG 289
                     T  ID   +S EL    S ADLVI +G    R +  +         L + 
Sbjct: 238 KLIDSGSDFWTPGIDFWEMSPELYEELSKADLVIFKGDLNYRKLTGDRDWPPTTPILALR 297

Query: 290 MVKHPEVAQFLGGRLYDCV 308
             K   VA  L G L + +
Sbjct: 298 TAKCDVVAGLLVG-LGEKL 315

This family has no known function. Length = 315

>gnl\|CDD\|215489 PLN02902, PLN02902, pantothenate kinase	Back alignment and domain information

>gnl\|CDD\|215489 PLN02902, PLN02902, pantothenate kinase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		316
PLN02902		876	pantothenate kinase	100.0
KOG4584		348	consensus Uncharacterized conserved protein [Gener	100.0
COG1578		285	Uncharacterized conserved protein [Function unknow	100.0
PF01937		355	DUF89: Protein of unknown function DUF89; InterPro	100.0
KOG3870		434	consensus Uncharacterized conserved protein [Funct	98.69
cd01080		168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	89.07

>PLN02902 pantothenate kinase	Back alignment and domain information

Probab=100.00  E-value=3.2e-80  Score=644.05  Aligned_cols=299  Identities=41%  Similarity=0.720  Sum_probs=277.1

Q ss_pred             CCCCcCCCCCCCCCCCCCcCCcccCCCCCCC-CCCCCcchhhHHHHHhhhhHHHHHHhcC-CCCCccHHHHHHHHHHHHH
Q 021170            4 ESELVPFPLLPTPIETNYRACTIPYRFPTDN-PKKPTRTEIAWLDLFLNSIPSFKKRAES-DPTVPDAHVRAEKFAQRYS   81 (316)
Q Consensus         4 ~~~~~~~pll~~~~~~~y~p~t~d~~~~~~~-~r~~~~~~~~wl~c~~~~i~~~~~~a~~-~~~~~~~~~ra~~~~~~~~   81 (316)
                      .+++++||||.||.  +|.|||+||+   |. +|.      ||++||.+++|+++++|.+ ++..+|+.+|+++|+++|.
T Consensus       494 ~~~l~~~pLL~~~~--~Y~p~t~d~~---d~~~r~------yW~~~f~~~i~~~~~~A~~sq~~~~da~~ra~~F~~~y~  562 (876)
T PLN02902        494 VPTLEVFPLLADPK--TYEPNTIDLS---DQSERE------YWFKVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFS  562 (876)
T ss_pred             ccccccccccCCCC--CCCCCcccCC---ccHHHH------HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            46899999999998  9999999994   33 554      9999999999999999974 5688999999999999999


Q ss_pred             HHHHHhhcCCCCCCCchhhhHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 021170           82 EILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFA  161 (316)
Q Consensus        82 ~~l~~l~~~p~~~~~~~~~~~~~~~~e~~~~~~G~~Dpy~~~K~~~N~~Al~~~p~l~~~ld~i~~~~d~l~~aik~aia  161 (316)
                      ++|++++++|.+||+++ ++.+++++|+|+|++|++|||+++|+++|+.|++++|++++++|+++ +++||++++|+++|
T Consensus       563 ~~L~~l~~~p~a~G~~~-~~~Ll~~rE~~Lre~Gf~DPY~~vK~~eN~~AL~llp~l~~~ld~~~-~edrL~~aVk~aiA  640 (876)
T PLN02902        563 AHLARLMEEPAAYGKLG-LANLLELREECLREFHFVDAYRSIKQRENEASLAVLPDLLAELDSMT-EETRLLTLIEGVLA  640 (876)
T ss_pred             HHHHHHHhCccccCCch-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHH
Confidence            99999999999998886 48999999999999999999999999999999999999999998776 46999999999999


Q ss_pred             hcccccchhhHHHhhccCC-CcHHHHHhhhcCCCCCCCcHHHHHHHhcc------cCCCeEEEEecCCCchhhhchHHHH
Q 021170          162 GNIFDLGSAQLAEVFSKDG-MSFLASCQNLVPRPWVIDDLETFKVKWSK------KAWKKAVIFVDNSGADIILGILPFA  234 (316)
Q Consensus       162 GN~iD~Ga~~~~~~~~~~~-~~~~~~~~~~~~~p~~idd~~~~~~~l~~------~~~k~vl~~~DNaGEdIVfD~LPLi  234 (316)
                      ||+||||+++.+++++.+. ++|++.+++++++||.+||++.|+++|.+      ++||++|||+||||+|||||+|||+
T Consensus       641 GNifD~Ga~~~v~l~~~~~~~~~~~~~~~~~~rpw~iDD~d~f~erL~~~~~~~~~~~KkvLyf~DNAGaEIVLD~LpLi  720 (876)
T PLN02902        641 ANIFDWGSRACVELYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGGKKPKPHKRALLFVDNSGADVVLGMLPLA  720 (876)
T ss_pred             HhhhhhhhhhhhhhccccchhhHHHHHHHhhcCCCccCCHHHHHHHHhhcccccCCCccEEEEEecCCCCceecChHHHH
Confidence            9999999998888887653 68999999999999999999999999953      3699999999999977999999999


Q ss_pred             HHHHhCCCce----------------------------------------------------------------------
Q 021170          235 RELLRRGTQV----------------------------------------------------------------------  244 (316)
Q Consensus       235 ~eL~~~g~~V----------------------------------------------------------------------  244 (316)
                      |+|+++|++|                                                                      
T Consensus       721 RELl~rgtkV~lavng~PiINDvT~eDl~~~~~~~a~~~~~l~~A~~aG~~~~~~~~~ld~~~~~~~~~~~l~VV~SG~~  800 (876)
T PLN02902        721 RELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMVNTDDGSKDDSTSVPLMVVENGCG  800 (876)
T ss_pred             HHHHHcCCEEEEEECCCCchhhhhHHHHHHHHHHHhhcccHHHHHHHhcccccccccccccccccccccceEEEEcCCCC
Confidence            9999988877                                                                      


Q ss_pred             ---eeCCCCCHHHHHHhccCCEEEEcCCCCCCCccchhhcccchhhhccCCCHHHHHHh-CCCCCCeEEEeccCC
Q 021170          245 ---IDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFL-GGRLYDCVFKYNEVS  315 (316)
Q Consensus       245 ---idL~~~S~e~~~~~~~ADLIIsKGmGn~~~~ni~~~f~cdllkL~~vKC~~vA~~l-G~~~gd~V~~~~~~~  315 (316)
                         +||+++|+||++++++|||||+|||||++|||++++|+||+|||||||++|+|++| |+++|||||||+++.
T Consensus       801 sPGidL~rvS~E~~~a~~~ADLIIaKGMGRaihTN~~a~f~cd~LklamiK~~~lA~~L~gG~~ydcV~k~e~~~  875 (876)
T PLN02902        801 SPCIDLRQVSSELAAAAKDADLIVLEGMGRALHTNFNARFKCEALKLAMVKNQRLAEKLINGNIYDCVCRYEPAS  875 (876)
T ss_pred             CCCcChHHCCHHHHHHhcCCCEEEEcCcccccccccccceecchhHHhHhccHHHHhhccCCceEEEEEecccCC
Confidence               23689999999999999999999999999999999999999999999999999999 999999999999875

>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]	Back alignment and domain information

>COG1578 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins	Back alignment and domain information

>KOG3870 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		316
1xfi_A		367	X-Ray Structure Of Gene Product From Arabidopsis Th		1e-144

>pdb|1XFI|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g17340 Length = 367

Back alignment and structure

Iteration: 1

Score = 509 bits (1310), Expect = e-144, Method: Compositional matrix adjust. Identities = 258/366 (70%), Positives = 281/366 (76%), Gaps = 51/366 (13%) Query: 2 ESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAE 61 ES+SE+VPFP LP PIE NYRACTIPYRFP+D+PKK T EI+W+++F NSIPSFKKRAE Sbjct: 2 ESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAE 61 Query: 62 SDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFK 121 SD TVPDA RAEKFA+RY+ ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFK Sbjct: 62 SDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFK 121 Query: 122 KVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGM 181 KVKDEENAKAISLF VV L+D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGM Sbjct: 122 KVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGM 181 Query: 182 SFLASCQNLVPRPWVIDDLETFXXXXXXXXXXXXXIFVDNSGADIILGILPFARELLRRG 241 SFLASCQNLVPRPWVIDDLE F IFVDNSGADIILGILPFARELLRRG Sbjct: 182 SFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRG 241 Query: 242 TQ---------------------------------------------------VIDLTAV 250 Q VIDL+ V Sbjct: 242 AQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRV 301 Query: 251 SQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFK 310 SQELAYL+SDADLVI+EGMGRGIETNLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVFK Sbjct: 302 SQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFK 361 Query: 311 YNEVSS 316 +NEV S Sbjct: 362 FNEVQS 367

PyMOL of 1xfi

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		316
1xfi_A		367	Unknown protein; structural genomics, protein stru	1e-119
2g8l_A		299	287AA long hypothetical protein; structural genomi	5e-45
2ffj_A		300	Conserved hypothetical protein; structural genomic	6e-43
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A Length = 367	Back alignment and structure

 Score =  346 bits (888), Expect = e-119
 Identities = 265/366 (72%), Positives = 291/366 (79%), Gaps = 51/366 (13%)

Query: 2   ESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAE 61
           ES+SE+VPFP LP PIE NYRACTIPYRFP+D+PKK T  EI+W+++F NSIPSFKKRAE
Sbjct: 2   ESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAE 61

Query: 62  SDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFK 121
           SD TVPDA  RAEKFA+RY+ ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFK
Sbjct: 62  SDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFK 121

Query: 122 KVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGM 181
           KVKDEENAKAISLF  VV L+D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGM
Sbjct: 122 KVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGM 181

Query: 182 SFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRG 241
           SFLASCQNLVPRPWVIDDLE F+ KW  K+WKKAVIFVDNSGADIILGILPFARELLRRG
Sbjct: 182 SFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRG 241

Query: 242 TQVI---------------------------------------------------DLTAV 250
            QV+                                                   DL+ V
Sbjct: 242 AQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRV 301

Query: 251 SQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFK 310
           SQELAYL+SDADLVI+EGMGRGIETNLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVFK
Sbjct: 302 SQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFK 361

Query: 311 YNEVSS 316
           +NEV S
Sbjct: 362 FNEVQS 367

PyMOL of 1xfi

>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1 Length = 299	Back alignment and structure

>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1 Length = 300	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		316
1xfi_A		367	Unknown protein; structural genomics, protein stru	100.0
2g8l_A		299	287AA long hypothetical protein; structural genomi	100.0
2ffj_A		300	Conserved hypothetical protein; structural genomic	100.0
3pt1_A		471	UPF0364 protein YMR027W; alpha/beta fold, carbohyd	99.53
1edz_A		320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	84.12
2c2x_A		281	Methylenetetrahydrofolate dehydrogenase- methenylt	83.38

>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A	Back alignment and structure

Probab=100.00  E-value=6.5e-74  Score=558.08  Aligned_cols=314  Identities=84%  Similarity=1.354  Sum_probs=278.3

Q ss_pred             CCCCCCcCCCCCCCCCCCCCcCCcccCCCCCCCCCCCCcchhhHHHHHhhhhHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q 021170            2 ESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYS   81 (316)
Q Consensus         2 ~~~~~~~~~pll~~~~~~~y~p~t~d~~~~~~~~r~~~~~~~~wl~c~~~~i~~~~~~a~~~~~~~~~~~ra~~~~~~~~   81 (316)
                      +|++++++||||.||.+.+|.|||+||.+|+|..+.+++++.||++||.++|++++++|..++..+++.+|+++|+++|.
T Consensus         2 ~~~~~~~~~pll~~~~~~~y~p~t~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~a~~ra~~f~~~~~   81 (367)
T 1xfi_A            2 ESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYA   81 (367)
T ss_dssp             ----CCBCCTTSCSCCTTTCCSBCSCCCCTTSCTTSCCHHHHHHHHHHHTTHHHHHHHHHTCTTSTTHHHHHHHHHHHHH
T ss_pred             CCccccccCcccCCccccCCCCCccCCCCCcccccccHHHHHHHHHHHHHhhHHHHHHhccCCCCccHHHHHHHHHHHHH
Confidence            67899999999999943499999999999999988989999999999999999999999877888999999999999999


Q ss_pred             HHHHHhhcCCCCCCCchhhhHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 021170           82 EILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFA  161 (316)
Q Consensus        82 ~~l~~l~~~p~~~~~~~~~~~~~~~~e~~~~~~G~~Dpy~~~K~~~N~~Al~~~p~l~~~ld~i~~~~d~l~~aik~aia  161 (316)
                      ++|++++++|.+||.|+.++.++++++++++.+|+.|||+++|+++|+.|+++++.+.+.+++++.++++|.++++++++
T Consensus        82 ~~l~~l~~~p~~~g~~~~~r~~~~~~~~il~~~g~~DPf~~~K~~~n~~al~~l~~l~~~l~~~~~~~~~l~~llr~al~  161 (367)
T 1xfi_A           82 GILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFA  161 (367)
T ss_dssp             HHHHHHHHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCccccCCcchHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            99999999999999976678999999999999999999999999999999999999999988776667899999999999


Q ss_pred             hcccccchhhHHHhhccCCCcHHHHHhhhcCCCCCCCcHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCC
Q 021170          162 GNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRG  241 (316)
Q Consensus       162 GN~iD~Ga~~~~~~~~~~~~~~~~~~~~~~~~p~~idd~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g  241 (316)
                      ||+||||+..++++++.++++++++++++.++||.+||++.|.++|.+.++++|+||+||||++||||+|||+++|+++|
T Consensus       162 GN~~Dlg~~~~~~~~~~~~~~~~~~~~~~~~~~~lvdd~~~l~~~L~~~~~k~Vl~v~DNAG~Eiv~D~L~La~~Ll~~g  241 (367)
T 1xfi_A          162 GNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRG  241 (367)
T ss_dssp             HHHC---------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHHHHHHHTT
T ss_pred             HhccccccccccccccccCCCHHHHHHHhhccCCCcCCHHHHHHHhcccCCCEEEEEecCCCchhhccHHHHHHHHHHcC
Confidence            99999999887666665568999999998999999999999999995445799999999999559999999999999999


Q ss_pred             Cce---------------------------------------------------eeCCCCCHHHHHHhccCCEEEEcCCC
Q 021170          242 TQV---------------------------------------------------IDLTAVSQELAYLASDADLVILEGMG  270 (316)
Q Consensus       242 ~~V---------------------------------------------------idL~~~S~e~~~~~~~ADLIIsKGmG  270 (316)
                      ++|                                                   +++.++|+||.+.+++|||||+||||
T Consensus       242 ~kVvl~vK~~P~vnDvT~~D~~~~L~~l~~~~~~L~~l~~g~l~vi~~G~~~~~~~l~~~s~el~~~l~~ADLVI~KG~g  321 (367)
T 1xfi_A          242 AQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMG  321 (367)
T ss_dssp             CEEEEEEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSEEEEESHH
T ss_pred             CEEEEEECCcCceeeCCHHHHHHHHHHHHhcchhhhhhccCcEEEEcCCCCCCCcChHHCCHHHHHHHccCCEEEEECCC
Confidence            988                                                   55999999999999999999999999


Q ss_pred             CCCCccchhhcccchhhhccCCCHHHHHHhCCCCCCeEEEeccCC
Q 021170          271 RGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVS  315 (316)
Q Consensus       271 n~~~~ni~~~f~cdllkL~~vKC~~vA~~lG~~~gd~V~~~~~~~  315 (316)
                      |.+++|++..|.|++++|+|+||++||++||+++||+||++++++
T Consensus       322 Nyl~t~~~~~f~~~i~~L~~iKc~~vA~~lg~~~~~~V~~~~~~~  366 (367)
T 1xfi_A          322 RGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQ  366 (367)
T ss_dssp             HHTTBSTTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEECC-
T ss_pred             CCCccchhhhcCcchhHHHhhCcHHHHHHhCCCcCCEEEEeCCCC
Confidence            999999999999999999999999999999999999999999875

PyMOL of 1xfi

>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1	Back alignment and structure

>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1	Back alignment and structure

>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}	Back alignment and structure

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*	Back alignment and structure

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		316
d1xfia_		360	e.50.1.1 (A:) Hypothetical protein At2g17340 {Thal	1e-137
d2ffja1		282	e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Ar	2e-35
d2g8la1		284	e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Py	2e-30

>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 360	Back information, alignment and structure


class: Multi-domain proteins (alpha and beta)
fold: AF1104-like
superfamily: AF1104-like
family: AF1104-like
domain: Hypothetical protein At2g17340
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  389 bits (1002), Expect = e-137
 Identities = 262/360 (72%), Positives = 286/360 (79%), Gaps = 51/360 (14%)

Query: 6   ELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPT 65
           E+VPFP LP PIE NYRACTIPYRFP+D+PKK T  EI+W+++F NSIPSFKKRAESD T
Sbjct: 1   EMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDIT 60

Query: 66  VPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKD 125
           VPDA  RAEKFA+RY+ ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKD
Sbjct: 61  VPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKD 120

Query: 126 EENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLA 185
           EENAKAISLF  VV L+D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGMSFLA
Sbjct: 121 EENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLA 180

Query: 186 SCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQV- 244
           SCQNLVPRPWVIDDLE F+ KW  K+WKKAVIFVDNSGADIILGILPFARELLRRG QV 
Sbjct: 181 SCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVV 240

Query: 245 --------------------------------------------------IDLTAVSQEL 254
                                                             IDL+ VSQEL
Sbjct: 241 LAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQEL 300

Query: 255 AYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEV 314
           AYL+SDADLVI+EGMGRGIETNLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVFK+NEV
Sbjct: 301 AYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEV 360

PyMOL of d1xfia_

>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 282	Back information, alignment and structure

>d2g8la1 e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Pyrococcus horikoshii [TaxId: 53953]} Length = 284	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		316
d1xfia_		360	Hypothetical protein At2g17340 {Thale cress (Arabi	100.0
d2g8la1		284	Hypothetical protein PH1575 {Pyrococcus horikoshii	100.0
d2ffja1		282	Hypothetical protein AF1104 {Archaeoglobus fulgidu	100.0

>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: AF1104-like
superfamily: AF1104-like
family: AF1104-like
domain: Hypothetical protein At2g17340
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-90  Score=667.07  Aligned_cols=309  Identities=85%  Similarity=1.364  Sum_probs=282.1

Q ss_pred             CCcCCCCCCCCCCCCCcCCcccCCCCCCCCCCCCcchhhHHHHHhhhhHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHH
Q 021170            6 ELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILE   85 (316)
Q Consensus         6 ~~~~~pll~~~~~~~y~p~t~d~~~~~~~~r~~~~~~~~wl~c~~~~i~~~~~~a~~~~~~~~~~~ra~~~~~~~~~~l~   85 (316)
                      ++||||||.||++++|.||||||.+++++.++++|++.||++||.+++|+++++|.++++.+|+.+||++|.++|.++|+
T Consensus         1 ~~v~~pll~~~~~~~y~~~tv~~~~~~~~~~~~~~~~~~Wl~~f~~~i~~~~~~A~s~~~~~da~~Ra~~f~~~y~~~L~   80 (360)
T d1xfia_           1 EMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILE   80 (360)
T ss_dssp             CCBCCTTSCSCCTTTCCSBCSCCCCTTSCTTSCCHHHHHHHHHHHTTHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             CCccccccCCccccCccCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            58999999999877999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCchhhhHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhHHHHHHHHHHhhccc
Q 021170           86 DMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIF  165 (316)
Q Consensus        86 ~l~~~p~~~~~~~~~~~~~~~~e~~~~~~G~~Dpy~~~K~~~N~~Al~~~p~l~~~ld~i~~~~d~l~~aik~aiaGN~i  165 (316)
                      +++++|.++|++++...+++++|+|+|++|++|||+++|+++|+.|++++|++++++|+++++.+||++++++++|||+|
T Consensus        81 ~l~~~p~~~g~~~~~~ll~~~re~~Lr~~Gf~DpY~~~K~~eN~~Al~~lp~~~~~id~i~d~~~~l~~~vr~aiAGNif  160 (360)
T d1xfia_          81 DLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIF  160 (360)
T ss_dssp             HHHHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhCCcccCcccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhh
Confidence            99999999999997545679999999999999999999999999999999999999999988889999999999999999


Q ss_pred             ccchhhHHHhhccCCCcHHHHHhhhcCCCCCCCcHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCce-
Q 021170          166 DLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQV-  244 (316)
Q Consensus       166 D~Ga~~~~~~~~~~~~~~~~~~~~~~~~p~~idd~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V-  244 (316)
                      |||+++.+++|+.++++|++++++++++||.+||++.|.+++.+++||++|||+|||||||+.++||++++|+++|++| 
T Consensus       161 D~Ga~~~~~~~~~~~~~~~~~~~~~~~rp~~vDd~d~~~~rl~~~~~k~vly~~DNaGe~Vfd~lL~~~rell~~g~~V~  240 (360)
T d1xfia_         161 DLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVV  240 (360)
T ss_dssp             ---------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHHHHHHHTTCEEE
T ss_pred             hcccccchhhhccccchHHHHHHHhhcCCCccccHHHHHHHHhcCCcceEEEEecCCchHHHHHHHHHHHHHhcCCCeEE
Confidence            9999999999998889999999999999999999999999998788999999999999955556678899999999988 


Q ss_pred             --------------------------------------------------eeCCCCCHHHHHHhccCCEEEEcCCCCCCC
Q 021170          245 --------------------------------------------------IDLTAVSQELAYLASDADLVILEGMGRGIE  274 (316)
Q Consensus       245 --------------------------------------------------idL~~~S~e~~~~~~~ADLIIsKGmGn~~~  274 (316)
                                                                        +||+++|+||++++++|||||+|||||++|
T Consensus       241 l~v~~~PilNDvT~~El~~~~~~~~~~~~~~~gld~~~~~Vv~sG~~~Pg~dL~~~s~E~~~~~~~aDLVI~KGMGr~~~  320 (360)
T d1xfia_         241 LAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIE  320 (360)
T ss_dssp             EEEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSEEEEESHHHHTT
T ss_pred             EEECCCcchhhhhHHHHHHHHHHHhhhhhHhhhhcccceEEecCCCCCCCcChHhCCHHHHHHHhcCCEEEEcCCcchhh
Confidence                                                              779999999999999999999999999999


Q ss_pred             ccchhhcccchhhhccCCCHHHHHHhCCCCCCeEEEeccC
Q 021170          275 TNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEV  314 (316)
Q Consensus       275 ~ni~~~f~cdllkL~~vKC~~vA~~lG~~~gd~V~~~~~~  314 (316)
                      ||++++|+||+|||+||||+|||++||+++|||||||+++
T Consensus       321 tN~~a~f~c~~lkL~~vK~~~vA~~lGg~~~d~V~k~~~~  360 (360)
T d1xfia_         321 TNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEV  360 (360)
T ss_dssp             BSTTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEECC
T ss_pred             ccchhhcCCCeehhhhhcCHHHHHHhCCccccEEEEecCC
Confidence            9999999999999999999999999999999999999874

PyMOL of d1xfia_

>d2g8la1 e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure