Citrus Sinensis ID: 021175

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MMLLQTTNLFPLSHSNYLLSLNSKPKNLPLQAIFHHFNAPVSTTSRASCALNVTRCCHLQMGRRELATETCLPTNFENSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVPVKSKDR
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHcccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccHHHccccccccccEEEEEEEccccccccccccccccccHcHHHHHHcccHHHHHHcccHHEcccccccHccHHHHcccEEEEEEEcHcHHHHEHcHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mmllqttnlfplshsnyllslnskpknlplqaifhhfnapvsttsrascalnvTRCChlqmgrrelatetclptnfeNSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLlfdpnnkvarprrdalkdrvplykgvpvkskdr
Flexible Loop (DISEMBL)
mmllqttnlfpLSHSNYLLSLNSKPKNLPLQAIFHHFNAPVSTTSRASCALNVTRCCHLQMGRrelatetclptnfeNSMRKLLAIRDKNVKRLIILASafsfgsssWLISARVANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELqeqvrsgdasatEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEevllfdpnnkvarprrdalkdrvplykgvpvkskdr
Low Complexity Region (SEG)
MMLLQTTNLFPlshsnyllslnsKPKNLPLQAIFHHFNAPVSTTSRASCALNVTRCCHLQMGRRELATETCLPTNFENSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFElgiqlsylllllgllgvgTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVPVKSKDR
Disordered region (IsUnstruct)
*******NLFPLSHSNYLLSLNSKPKNLPLQAIFHHFNAPVSTTSRASCALNVTRCCHLQMGRRELATETCLPTNFENSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSA************SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP*****************************
Disordered Region (DISOPRED)
MMLLQ**NLFPLSHSNYLLSLNSKPKN**********NAPVSTTSRASCALNVTRCCHLQMGRRELATETCLPTNFENSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP*KS***
Disordered Region (DISEMBL)
MMLLQTTNLFPLSHSNYLLSLNSKPKNLPLQAIFHHFNAPVSTTSRASCALNVTRCCHLQMGRRELATETCLPTNFENSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKEL********ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVPVKSKDR
Disordered Region (DISPRO)
*MLLQTTNLFPLSHSNYLLSLNSKPKNLPLQAIFHHFNAP****S**SCALNVTRCCHLQMGRRELATETCLPTNFENSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLLQTTNLFPLSHSNYLLSLNSKPKNLPLQAIFHHFNAPVSTTSRASCALNVTRCCHLQMGRRELATETCLPTNFENSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVPVKSKDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
O78458	178	Uncharacterized protein y	yes	no	0.471	0.837	0.313	4e-18
P48277	172	Uncharacterized protein y	N/A	no	0.522	0.959	0.253	4e-13
Q1XDU6	178	Uncharacterized protein y	N/A	no	0.515	0.915	0.279	7e-10
Q96301	914	Probable UDP-N-acetylgluc	no	no	0.240	0.083	0.389	3e-08
Q8RVB2	931	Probable UDP-N-acetylgluc	N/A	no	0.240	0.081	0.363	8e-08
O82039	932	Probable UDP-N-acetylgluc	N/A	no	0.240	0.081	0.363	1e-07
Q43468	569	Heat shock protein STI OS	no	no	0.386	0.214	0.277	3e-07
Q8LP10	918	Probable UDP-N-acetylgluc	N/A	no	0.237	0.081	0.350	6e-07
O82422	944	Probable UDP-N-acetylgluc	N/A	no	0.205	0.068	0.350	7e-07
O34452	206	TPR repeat-containing pro	yes	no	0.424	0.650	0.258	9e-07

>sp|O78458|YCF37_GUITH Uncharacterized protein ycf37 OS=Guillardia theta GN=ycf37 PE=3 SV=1

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 1/150 (0%)

Query: 155 FVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKW 214
           F+I Q+  RR  DL    +QE++R+  A   +++ELG + L +K Y  A      A+  W
Sbjct: 23  FIISQIWSRRTADLRLVSIQEKIRNAKADGKDFYELGVIFLSKKLYDQAIINFRYALNLW 82

Query: 215 DGDDQD-LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLK 273
           + DD+  LA +YN +G +Y +  + D  +  +E A+  +P Y+    N+G  YEK  +L 
Sbjct: 83  ELDDKTGLANLYNTIGFTYTQIAQYDLALFYYEKALLHEPNYLVTLKNIGFIYEKTNNLV 142

Query: 274 SALKAFEEVLLFDPNNKVARPRRDALKDRV 303
            A   + ++L +D +NK A  + + L  R+
Sbjct: 143 KAKDIYLQILKYDVDNKFATDKLNLLTGRL 172

Guillardia theta (taxid: 55529)

>sp|P48277|YCF37_CYAPA Uncharacterized protein ycf37 OS=Cyanophora paradoxa GN=ycf37 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 88/166 (53%), Gaps = 1/166 (0%)

Query: 139 LSYLLLLLGLLGVGTF-FVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRR 197
            S+ ++   L+ +    F+I+++   R LDL    L++++    A+  +Y  L ++ +++
Sbjct: 6   FSFYIIFFSLIVLALISFLIQEIQKSRFLDLEITRLRKKIYQEKATEKDYNNLASIYIKK 65

Query: 198 KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVT 257
           K Y  A K  L+ +E  + D   LA +YN+LG     + + +  I  ++ A+   P ++ 
Sbjct: 66  KLYSQAQKEFLKILENKNLDKSQLALIYNSLGYICSAQEQYELAIEYYKKALFYIPDFIL 125

Query: 258 AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV 303
           A  NL   +E K     A+  ++EVL+FDP N++A+ +   +++ +
Sbjct: 126 ARINLARIFELKNLKTEAINMYQEVLIFDPKNQLAKRKLSIIENLI 171

Cyanophora paradoxa (taxid: 2762)

>sp|Q1XDU6|YCF37_PORYE Uncharacterized protein ycf37 OS=Porphyra yezoensis GN=ycf37 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 5/168 (2%)

Query: 135 LGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVM 194
           L + + YL +L   L +  + + +Q+     L+   K   ++ ++      E F    V 
Sbjct: 3   LALPIFYLSILTIFLLILNWLIFQQLKTILLLESQFKYFVDKSQNRKLEPDESFAFAKVC 62

Query: 195 LRRKFYPAATKYLLQAIEKW-DGDDQD----LAQVYNALGVSYVREGKLDKGISQFETAV 249
           + +K++  A      A++ + D +  D    +A +YN LG  Y   G+     + +E A+
Sbjct: 63  VAKKYFSKAIIEGQLALKNYRDLNILDNNIVIANLYNMLGFIYFEAGQTSFAKNFYEQAL 122

Query: 250 KLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRD 297
           ++ P YV A NNL   YE+ KDLK A   +++VL  + NNK A  R+D
Sbjct: 123 QINPNYVVALNNLAKIYEEVKDLKKAESLYDKVLTLNLNNKTANRRKD 170

Porphyra yezoensis (taxid: 2788)

>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 42/77 (54%)

Query: 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
           + AQ  N LGV Y  +GK+D   S  E A+   P Y  A+NNLG  Y    ++  A+ A+
Sbjct: 361 NFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITMAIDAY 420

Query: 280 EEVLLFDPNNKVARPRR 296
           EE L  DP+++ A   R
Sbjct: 421 EECLKIDPDSRNAGQNR 437

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1

 Score = 58.2 bits (139), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query: 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
           + +Q  N LGV Y  +GK+D   S  E A+   P Y  A+NNLG  Y    ++  A++A+
Sbjct: 366 NFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISLAIEAY 425

Query: 280 EEVLLFDPNNKVARPRR 296
           E+ L  DP+++ A   R
Sbjct: 426 EQCLKIDPDSRNAGQNR 442

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query: 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
           + +Q  N LGV Y  +GK+D   S  E A+   P Y  A+NNLG  Y    ++  A++A+
Sbjct: 366 NFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISLAIEAY 425

Query: 280 EEVLLFDPNNKVARPRR 296
           E+ L  DP+++ A   R
Sbjct: 426 EQCLKIDPDSRNAGQNR 442

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Petunia hybrida (taxid: 4102)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q43468|STIP_SOYBN Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV 224
           E + + KEL++Q       A E  E G  + +++ YP ATK+  +AI++   D    A+ 
Sbjct: 362 EAEKAKKELEQQEYFDPKLADEAREKGNELFKQQKYPEATKHYTEAIKRNPKD----AKA 417

Query: 225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL 284
           Y+     Y + G + +G+   E  ++L P +   +   G      K+   AL+ + E L 
Sbjct: 418 YSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFSMKEYDKALETYREGLK 477

Query: 285 FDPNNK 290
            DPNN+
Sbjct: 478 HDPNNQ 483

Glycine max (taxid: 3847)

>sp|Q8LP10|SPY_EUSER Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Eustoma exaltatum subsp. russellianum GN=SPY PE=2 SV=1

 Score = 55.5 bits (132), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%)

Query: 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
           + +Q  N LGV +  +GK+D   S  E A+   P Y  A+NNLG  Y    ++  A++A+
Sbjct: 338 NFSQSLNNLGVVFTVQGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNIFLAIEAY 397

Query: 280 EEVLLFDPNNKVARPRR 296
           E+ L  DP+++ A   R
Sbjct: 398 EQCLKIDPDSRNAGQNR 414

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins (By similarity). May function as a negative regulator of GA signal transduction during vernalization, inhibiting adventitious shoot elongation during vernalization.

Eustoma exaltatum subsp. russellianum (taxid: 52518)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O82422|SPY_HORVU Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Hordeum vulgare GN=SPY PE=2 SV=1

 Score = 55.1 bits (131), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%)

Query: 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
           + +Q  N LGV Y  +GK+D   S  E A+   P Y  A+NNLG  Y     +  +++A+
Sbjct: 352 NFSQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAYNNLGVLYRDAGSITLSVQAY 411

Query: 280 EEVLLFDPNNKVARPRR 296
           E  L  DP+++ A   R
Sbjct: 412 ERCLQIDPDSRNAGQNR 428

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O34452|YRRB_BACSU TPR repeat-containing protein YrrB OS=Bacillus subtilis (strain 168) GN=yrrB PE=1 SV=1

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 9/143 (6%)

Query: 150 GVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQ 209
           G G  +V+++ + +   D+  K L+  + +GD     ++ LG V+++ +    A  YL +
Sbjct: 63  GAGNVYVVKE-MYKEAKDMFEKALRAGMENGDL----FYMLGTVLVKLEQPKLALPYLQR 117

Query: 210 AIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK 269
           A+E  + D +   Q     G+    EG LD+ +SQF    +  PG+  A+ N G  Y  K
Sbjct: 118 AVELNENDTEARFQ----FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK 173

Query: 270 KDLKSALKAFEEVLLFDPNNKVA 292
           ++ + AL+  ++ +   P++ +A
Sbjct: 174 ENREKALEMLDKAIDIQPDHMLA 196

Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases.

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
449465368	313	PREDICTED: uncharacterized protein LOC10	0.939	0.948	0.737	1e-116
225460696	341	PREDICTED: uncharacterized protein LOC10	0.939	0.870	0.732	1e-111
296081161	325	unnamed protein product [Vitis vinifera]	0.939	0.913	0.732	1e-111
255571800	258	tetratricopeptide repeat protein, tpr, p	0.75	0.918	0.824	1e-100
224135899	225	predicted protein [Populus trichocarpa]	0.712	1.0	0.836	9e-98
224145202	221	predicted protein [Populus trichocarpa]	0.699	1.0	0.833	3e-95
297850728	291	tetratricopeptide repeat-containing prot	0.816	0.886	0.735	1e-94
30687988	301	tetratricopeptide repeat-containing prot	0.816	0.857	0.744	5e-94
22329737	296	tetratricopeptide repeat-containing prot	0.803	0.858	0.743	7e-94
21537104	300	unknown [Arabidopsis thaliana]	0.813	0.856	0.736	3e-91

>gi|449465368|ref|XP_004150400.1| PREDICTED: uncharacterized protein LOC101215394 [Cucumis sativus] gi|449496895|ref|XP_004160255.1| PREDICTED: uncharacterized LOC101215394 [Cucumis sativus]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/309 (73%), Positives = 249/309 (80%), Gaps = 12/309 (3%)

Query: 11  PLSHSNYLL---SLNSKPKNLPLQAIFHHFNAPVSTTSRASCALNVTRCCHLQMGRRELA 67
           P S S+  L   SL  KP NL LQ I HHF+ P+  T R  C LNV R   LQM +RELA
Sbjct: 14  PFSPSHSFLPFGSLQLKPHNLLLQEIVHHFDVPILQTVRKGCRLNVRRFSKLQMFQRELA 73

Query: 68  TETCLPTNFENSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISARVANASENVQMDAVY 127
            E+     FEN   +         K L +  SAFS G S WL+SA  A A E+++ + VY
Sbjct: 74  MESQSSAMFENCQPQ---------KGLALFLSAFSSGQSLWLVSAEAALAGEDMKTNTVY 124

Query: 128 EIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEY 187
           EIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASA EY
Sbjct: 125 EIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASAMEY 184

Query: 188 FELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFET 247
           FELGAVMLRRKFYPAATK+LLQAI+KWDGDDQDLAQVYNALGVSYVR+ KLDKGI+QFET
Sbjct: 185 FELGAVMLRRKFYPAATKFLLQAIDKWDGDDQDLAQVYNALGVSYVRDDKLDKGIAQFET 244

Query: 248 AVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK 307
           AVKLQPGYVTAWNNLGDAYEKKK+ KSALKAFEEVLLFDPNNK+ARPRRDALK+RV +YK
Sbjct: 245 AVKLQPGYVTAWNNLGDAYEKKKEYKSALKAFEEVLLFDPNNKLARPRRDALKERVDMYK 304

Query: 308 GVPVKSKDR 316
           GVPVKSK+R
Sbjct: 305 GVPVKSKNR 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460696|ref|XP_002270347.1| PREDICTED: uncharacterized protein LOC100243534 [Vitis vinifera]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/299 (73%), Positives = 246/299 (82%), Gaps = 2/299 (0%)

Query: 20  SLNSKPKNLPLQAIFHHFNAPVSTTSRASCALNVTRCCHLQMGRRELATETCLPTNFENS 79
           S N +P  L L+      +AP S TS     L+VT    LQ+  RE+A ++    N +  
Sbjct: 43  SRNWRPYRLALEVTTQRCSAPTSATSVTDHGLDVTESPILQIFGREVAIKSLTSRNLKGF 102

Query: 80  MRKLLAIRD-KNVKRLIILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFELGIQ 138
           +  +LA  D  N KR +I  SA S G +SWL SA+VA++SE+V+M+ VYE+GELFELGIQ
Sbjct: 103 LTNILAFEDATNAKRPLIAVSALSCGVASWLTSAQVAHSSEDVKMNVVYEVGELFELGIQ 162

Query: 139 LSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK 198
           LSYLLLLLGL+GVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATE FELGAVMLRRK
Sbjct: 163 LSYLLLLLGLIGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATELFELGAVMLRRK 222

Query: 199 FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTA 258
           FYPAATK+LLQAIEKWDGDDQDLAQVYNALGVSYVR+GKL+KGI+QFE AVKLQPGYVTA
Sbjct: 223 FYPAATKFLLQAIEKWDGDDQDLAQVYNALGVSYVRDGKLEKGITQFENAVKLQPGYVTA 282

Query: 259 WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKG-VPVKSKDR 316
           WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV LYKG VP + K+R
Sbjct: 283 WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVQLYKGVVPTQPKER 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081161|emb|CBI18187.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/299 (73%), Positives = 246/299 (82%), Gaps = 2/299 (0%)

Query: 20  SLNSKPKNLPLQAIFHHFNAPVSTTSRASCALNVTRCCHLQMGRRELATETCLPTNFENS 79
           S N +P  L L+      +AP S TS     L+VT    LQ+  RE+A ++    N +  
Sbjct: 27  SRNWRPYRLALEVTTQRCSAPTSATSVTDHGLDVTESPILQIFGREVAIKSLTSRNLKGF 86

Query: 80  MRKLLAIRD-KNVKRLIILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFELGIQ 138
           +  +LA  D  N KR +I  SA S G +SWL SA+VA++SE+V+M+ VYE+GELFELGIQ
Sbjct: 87  LTNILAFEDATNAKRPLIAVSALSCGVASWLTSAQVAHSSEDVKMNVVYEVGELFELGIQ 146

Query: 139 LSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK 198
           LSYLLLLLGL+GVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATE FELGAVMLRRK
Sbjct: 147 LSYLLLLLGLIGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATELFELGAVMLRRK 206

Query: 199 FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTA 258
           FYPAATK+LLQAIEKWDGDDQDLAQVYNALGVSYVR+GKL+KGI+QFE AVKLQPGYVTA
Sbjct: 207 FYPAATKFLLQAIEKWDGDDQDLAQVYNALGVSYVRDGKLEKGITQFENAVKLQPGYVTA 266

Query: 259 WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKG-VPVKSKDR 316
           WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV LYKG VP + K+R
Sbjct: 267 WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVQLYKGVVPTQPKER 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571800|ref|XP_002526843.1| tetratricopeptide repeat protein, tpr, putative [Ricinus communis] gi|223533847|gb|EEF35578.1| tetratricopeptide repeat protein, tpr, putative [Ricinus communis]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/239 (82%), Positives = 216/239 (90%), Gaps = 2/239 (0%)

Query: 80  MRKLLAIRDK-NVKRLIILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFELGIQ 138
           +R LL + DK ++KRL+I  S FS+G  S L S   A A E ++++A+YE+GELFELGIQ
Sbjct: 20  LRNLLDLEDKVHMKRLLIWVSTFSYGQISSLTSPLEAYAHETIRINALYEVGELFELGIQ 79

Query: 139 LSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK 198
           LSYLLLLL LLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATE FELGAVMLRRK
Sbjct: 80  LSYLLLLLALLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATELFELGAVMLRRK 139

Query: 199 FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTA 258
           FYPAA K+LLQAIEKWDGDDQDLAQVYNALGVSYVR+GKLDKGI+QFETAVKLQPGYVTA
Sbjct: 140 FYPAANKFLLQAIEKWDGDDQDLAQVYNALGVSYVRDGKLDKGITQFETAVKLQPGYVTA 199

Query: 259 WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVPVKS-KDR 316
           WNNLGDAYEKKK+ KSALKAFEEVLLFDPNNKVARPRRDA+KDRV +YKG+PVKS KDR
Sbjct: 200 WNNLGDAYEKKKEYKSALKAFEEVLLFDPNNKVARPRRDAMKDRVQMYKGIPVKSNKDR 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135899|ref|XP_002327331.1| predicted protein [Populus trichocarpa] gi|222835701|gb|EEE74136.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 189/226 (83%), Positives = 207/226 (91%), Gaps = 1/226 (0%)

Query: 91  VKRLIILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLG 150
           +KR+I+  SA SFG  S L S +VA+A E+++ DA+YE+GELFELGIQLSYLLLLL LLG
Sbjct: 1   MKRVIVSVSALSFGQISLLTSVQVAHAGESIKPDALYEVGELFELGIQLSYLLLLLALLG 60

Query: 151 VGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQA 210
           VGTFFVIRQVL+RRELDLSAKELQ  +RSGDASAT  FELGAVMLRRKFYPAATKYLLQA
Sbjct: 61  VGTFFVIRQVLMRRELDLSAKELQA-IRSGDASATGLFELGAVMLRRKFYPAATKYLLQA 119

Query: 211 IEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK 270
           IEKWDG+DQDLAQVYNALGVSY+ +GKLDKGI QFE AVKLQPGYVTAWNNLGDAYEKKK
Sbjct: 120 IEKWDGEDQDLAQVYNALGVSYILDGKLDKGIKQFEAAVKLQPGYVTAWNNLGDAYEKKK 179

Query: 271 DLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVPVKSKDR 316
           DLKSALKAFEEVLLFDPNNKVARPRRDALKD+V +YKGVP+KSKDR
Sbjct: 180 DLKSALKAFEEVLLFDPNNKVARPRRDALKDKVQMYKGVPIKSKDR 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145202|ref|XP_002325562.1| predicted protein [Populus trichocarpa] gi|222862437|gb|EEE99943.1| predicted protein [Populus trichocarpa]

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 185/222 (83%), Positives = 202/222 (90%), Gaps = 1/222 (0%)

Query: 95  IILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTF 154
           ++ AS  SFG  S L SA+VA+A E+++ +A+YE+GELFELGIQLSYLLLLL LLGVGTF
Sbjct: 1   MVWASVLSFGQISLLTSAQVAHARESIKPEAIYEVGELFELGIQLSYLLLLLALLGVGTF 60

Query: 155 FVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKW 214
           FVIRQVL RRELDLSAKELQ  +RSGDA+AT  FELGAVMLRRKFYPAATKYLLQAIEKW
Sbjct: 61  FVIRQVLTRRELDLSAKELQA-IRSGDATATGLFELGAVMLRRKFYPAATKYLLQAIEKW 119

Query: 215 DGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS 274
           DGDDQDLAQVYNALGVSYV +GKLDKG  QFE AVKLQPGYVTAWNNLGDAYEKKKDLKS
Sbjct: 120 DGDDQDLAQVYNALGVSYVLDGKLDKGSKQFEAAVKLQPGYVTAWNNLGDAYEKKKDLKS 179

Query: 275 ALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVPVKSKDR 316
           ALKAFEEVLLFDPNNKVARPRRDALKD+V +Y+GVP+KSKDR
Sbjct: 180 ALKAFEEVLLFDPNNKVARPRRDALKDKVQMYRGVPIKSKDR 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850728|ref|XP_002893245.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297339087|gb|EFH69504.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 195/265 (73%), Positives = 217/265 (81%), Gaps = 7/265 (2%)

Query: 55  RCCHLQMGRRELATETCLPTNFENSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISA-- 112
           +   LQ+  R LA  +      E S R L A+   ++K+L I  S F  G S  ++SA  
Sbjct: 31  KKISLQIHGRTLAIRSF----HEISARGLPALNKASLKKLPIKGSTFLLGQSMLMVSAYP 86

Query: 113 RVANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKE 172
           ++A A+E ++ + +YE+GELFEL IQLSYLLLLLGLLGVGTF+VIRQVLVRRELDLSAKE
Sbjct: 87  QMAAAAEIIKPEPIYEVGELFELSIQLSYLLLLLGLLGVGTFYVIRQVLVRRELDLSAKE 146

Query: 173 LQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY 232
           LQEQVRSGDASATE FELGAVMLRRKFYPAA K+L QAI+KWDGDDQDLAQVYNALGVSY
Sbjct: 147 LQEQVRSGDASATELFELGAVMLRRKFYPAANKFLQQAIQKWDGDDQDLAQVYNALGVSY 206

Query: 233 VREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           VRE KLDKGI+QFE AVKLQPGYVTAWNNLGDAYEKKK+L  ALKAFEEVLLFDPNNKVA
Sbjct: 207 VREDKLDKGIAQFEMAVKLQPGYVTAWNNLGDAYEKKKELPLALKAFEEVLLFDPNNKVA 266

Query: 293 RPRRDALKDRVPLYKG-VPVKSKDR 316
           RPRRDALKDRV LYKG V VKSK R
Sbjct: 267 RPRRDALKDRVKLYKGVVSVKSKKR 291

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687988|ref|NP_850950.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|222424443|dbj|BAH20177.1| AT1G22700 [Arabidopsis thaliana] gi|332192152|gb|AEE30273.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 195/262 (74%), Positives = 216/262 (82%), Gaps = 4/262 (1%)

Query: 59  LQMGRRELATETCLPTNF-ENSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISA--RVA 115
           LQ+  R LA  +     F E S R L A+   ++K+L I  S F  G S  ++SA  ++A
Sbjct: 40  LQIHGRTLAIRSFHDYVFAEISARGLPALNKASLKKLPIKGSTFLLGQSLLMVSAHPQLA 99

Query: 116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQE 175
            A+E ++ + +YE+GELFEL IQLSYLLLLLGLLGVGTF+VIRQVLVRRELDLSAKELQE
Sbjct: 100 AAAEIIKPEPIYEVGELFELSIQLSYLLLLLGLLGVGTFYVIRQVLVRRELDLSAKELQE 159

Query: 176 QVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE 235
           QVRSGDASATE FELGAVMLRRKFYPAA K+L QAI+KWDGDDQDLAQVYNALGVSYVRE
Sbjct: 160 QVRSGDASATELFELGAVMLRRKFYPAANKFLQQAIQKWDGDDQDLAQVYNALGVSYVRE 219

Query: 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR 295
            KLDKGI+QFE AVKLQPGYVTAWNNLGDAYEKKK+L  AL AFEEVLLFDPNNKVARPR
Sbjct: 220 DKLDKGIAQFEMAVKLQPGYVTAWNNLGDAYEKKKELPLALNAFEEVLLFDPNNKVARPR 279

Query: 296 RDALKDRVPLYKG-VPVKSKDR 316
           RDALKDRV LYKG V VKSK R
Sbjct: 280 RDALKDRVKLYKGVVAVKSKKR 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329737|ref|NP_564178.2| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|15294176|gb|AAK95265.1|AF410279_1 At1g22700/T22J18_13 [Arabidopsis thaliana] gi|24797054|gb|AAN64539.1| At1g22700/T22J18_13 [Arabidopsis thaliana] gi|332192153|gb|AEE30274.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  350 bits (897), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 194/261 (74%), Positives = 215/261 (82%), Gaps = 7/261 (2%)

Query: 59  LQMGRRELATETCLPTNFENSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISA--RVAN 116
           LQ+  R LA  +      E S R L A+   ++K+L I  S F  G S  ++SA  ++A 
Sbjct: 40  LQIHGRTLAIRSF----HEISARGLPALNKASLKKLPIKGSTFLLGQSLLMVSAHPQLAA 95

Query: 117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQ 176
           A+E ++ + +YE+GELFEL IQLSYLLLLLGLLGVGTF+VIRQVLVRRELDLSAKELQEQ
Sbjct: 96  AAEIIKPEPIYEVGELFELSIQLSYLLLLLGLLGVGTFYVIRQVLVRRELDLSAKELQEQ 155

Query: 177 VRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG 236
           VRSGDASATE FELGAVMLRRKFYPAA K+L QAI+KWDGDDQDLAQVYNALGVSYVRE 
Sbjct: 156 VRSGDASATELFELGAVMLRRKFYPAANKFLQQAIQKWDGDDQDLAQVYNALGVSYVRED 215

Query: 237 KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRR 296
           KLDKGI+QFE AVKLQPGYVTAWNNLGDAYEKKK+L  AL AFEEVLLFDPNNKVARPRR
Sbjct: 216 KLDKGIAQFEMAVKLQPGYVTAWNNLGDAYEKKKELPLALNAFEEVLLFDPNNKVARPRR 275

Query: 297 DALKDRVPLYKG-VPVKSKDR 316
           DALKDRV LYKG V VKSK R
Sbjct: 276 DALKDRVKLYKGVVAVKSKKR 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537104|gb|AAM61445.1| unknown [Arabidopsis thaliana]

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 193/262 (73%), Positives = 214/262 (81%), Gaps = 5/262 (1%)

Query: 59  LQMGRRELATETCLPTNF-ENSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISA--RVA 115
           LQ+  R LA  +     F E S R L A+   ++K+L I  S F  G S  ++SA  ++A
Sbjct: 40  LQIHGRTLAIRSFHDYVFAEISARGLPALNKASLKKLPIKGSTFLLGQSLLMVSAHPQLA 99

Query: 116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQE 175
            A+E ++ + +YE+GELFEL IQLSYLLLLLGLLGVGTF+VIRQVLVRRELDLSAKELQE
Sbjct: 100 AAAEIIKPEPIYEVGELFELSIQLSYLLLLLGLLGVGTFYVIRQVLVRRELDLSAKELQE 159

Query: 176 QVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE 235
           QVRSGDASATE FELGAVMLR KFYPAA K+L QAI+KWDGDDQDLAQVYNALGVSYVRE
Sbjct: 160 QVRSGDASATELFELGAVMLR-KFYPAANKFLQQAIQKWDGDDQDLAQVYNALGVSYVRE 218

Query: 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR 295
            KLDKGI+QFE AVKLQPGYVTAWNNLGDAYEKKK+L  AL AFEEVLLFDPNNKVARP 
Sbjct: 219 DKLDKGIAQFEMAVKLQPGYVTAWNNLGDAYEKKKELPLALNAFEEVLLFDPNNKVARPX 278

Query: 296 RDALKDRVPLYKG-VPVKSKDR 316
           RDALKDRV LYKG V VKSK R
Sbjct: 279 RDALKDRVKLYKGVVAVKSKKR 300

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2199639	301	AT1G22700 [Arabidopsis thalian	0.816	0.857	0.679	4.5e-82
UNIPROTKB|Q43468	569	STI "Heat shock protein STI" [	0.386	0.214	0.277	9e-07
ZFIN|ZDB-GENE-080722-25	826	ttc13 "tetratricopeptide repea	0.360	0.138	0.306	2.5e-06
UNIPROTKB|Q749Z1	585	GSU2601 "TPR domain/SEC-C moti	0.386	0.208	0.277	2.7e-06
TIGR_CMR|GSU_2601	585	GSU_2601 "TPR domain/SEC-C mot	0.386	0.208	0.277	2.7e-06
TAIR|locus:2080722	914	SPY "SPINDLY" [Arabidopsis tha	0.243	0.084	0.389	2.9e-06
TAIR|locus:2139109	558	Hop3 "AT4G12400" [Arabidopsis	0.367	0.207	0.258	0.00012
UNIPROTKB|Q3AFJ1	218	CHY_0221 "TPR domain protein"	0.354	0.513	0.284	0.0002
TIGR_CMR|CHY_0221	218	CHY_0221 "TPR domain protein"	0.354	0.513	0.284	0.0002
UNIPROTKB|Q608I2	699	MCA1509 "TPR domain protein" [	0.303	0.137	0.33	0.00022

TAIR|locus:2199639 AT1G22700 [Arabidopsis thaliana (taxid:3702)]

 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 178/262 (67%), Positives = 199/262 (75%)

Query:    59 LQMGRRELATETCLPTNF-ENSMRKLLAIRDKNVKRLIILASAFSFGSSSWLISA--RVA 115
             LQ+  R LA  +     F E S R L A+   ++K+L I  S F  G S  ++SA  ++A
Sbjct:    40 LQIHGRTLAIRSFHDYVFAEISARGLPALNKASLKKLPIKGSTFLLGQSLLMVSAHPQLA 99

Query:   116 NASENVQMDAVYEIGELFEXXXXXXXXXXXXXXXXXXTFFVIRQVLVRRELDLSAKELQE 175
              A+E ++ + +YE+GELFE                  TF+VIRQVLVRRELDLSAKELQE
Sbjct:   100 AAAEIIKPEPIYEVGELFELSIQLSYLLLLLGLLGVGTFYVIRQVLVRRELDLSAKELQE 159

Query:   176 QVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE 235
             QVRSGDASATE FELGAVMLRRKFYPAA K+L QAI+KWDGDDQDLAQVYNALGVSYVRE
Sbjct:   160 QVRSGDASATELFELGAVMLRRKFYPAANKFLQQAIQKWDGDDQDLAQVYNALGVSYVRE 219

Query:   236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR 295
              KLDKGI+QFE AVKLQPGYVTAWNNLGDAYEKKK+L  AL AFEEVLLFDPNNKVARPR
Sbjct:   220 DKLDKGIAQFEMAVKLQPGYVTAWNNLGDAYEKKKELPLALNAFEEVLLFDPNNKVARPR 279

Query:   296 RDALKDRVPLYKGV-PVKSKDR 316
             RDALKDRV LYKGV  VKSK R
Sbjct:   280 RDALKDRVKLYKGVVAVKSKKR 301

GO:0005634 "nucleus" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0048564 "photosystem I assembly" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

UNIPROTKB|Q43468 STI "Heat shock protein STI" [Glycine max (taxid:3847)]

 Score = 141 (54.7 bits), Expect = 9.0e-07, P = 9.0e-07
 Identities = 35/126 (27%), Positives = 63/126 (50%)

Query:   165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV 224
             E + + KEL++Q       A E  E G  + +++ YP ATK+  +AI++   + +D A+ 
Sbjct:   362 EAEKAKKELEQQEYFDPKLADEAREKGNELFKQQKYPEATKHYTEAIKR---NPKD-AKA 417

Query:   225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL 284
             Y+     Y + G + +G+   E  ++L P +   +   G      K+   AL+ + E L 
Sbjct:   418 YSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFSMKEYDKALETYREGLK 477

Query:   285 FDPNNK 290
              DPNN+
Sbjct:   478 HDPNNQ 483

GO:0005575 "cellular_component" evidence=ND

GO:0006986 "response to unfolded protein" evidence=IDA

GO:0009408 "response to heat" evidence=IDA

ZFIN|ZDB-GENE-080722-25 ttc13 "tetratricopeptide repeat domain 13" [Danio rerio (taxid:7955)]

 Score = 139 (54.0 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 38/124 (30%), Positives = 70/124 (56%)

Query:   166 LDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVY 225
             LDL+ K +Q Q      SA  Y   G ++   + Y AA +   Q++E     +Q +A +Y
Sbjct:   203 LDLT-KAIQLQ-----PSARLYRHRGTLLFISEDYMAAMEDFQQSLEL--KKNQPIAMLY 254

Query:   226 NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285
                G+++   G L + I  F+ A+KL+  ++ A+ +LG AY +  D+++A+++F++ LL 
Sbjct:   255 K--GLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLL 312

Query:   286 DPNN 289
             D N+
Sbjct:   313 DQNH 316

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q749Z1 GSU2601 "TPR domain/SEC-C motif domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 137 (53.3 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 35/126 (27%), Positives = 58/126 (46%)

Query:   166 LDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVY 225
             LD++    +E VR     A  ++ LG V  ++     A      AI      ++D A+ Y
Sbjct:    51 LDMALSCYREAVRLRPGFAQAHYNLGVVFQQKGLLDEAAASFRSAISF----NRDYAKAY 106

Query:   226 NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285
             N LG     +G+LD+    F  A+ ++PG+  A++NLG     +  L   L AF      
Sbjct:   107 NNLGYILATQGRLDESADCFNRAIAIEPGFAAAYHNLGTTLRHQGRLDETLAAFRTAHAI 166

Query:   286 DPNNKV 291
             +P++ V
Sbjct:   167 NPHDPV 172

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2601 GSU_2601 "TPR domain/SEC-C motif domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 137 (53.3 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 35/126 (27%), Positives = 58/126 (46%)

Query:   166 LDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVY 225
             LD++    +E VR     A  ++ LG V  ++     A      AI      ++D A+ Y
Sbjct:    51 LDMALSCYREAVRLRPGFAQAHYNLGVVFQQKGLLDEAAASFRSAISF----NRDYAKAY 106

Query:   226 NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285
             N LG     +G+LD+    F  A+ ++PG+  A++NLG     +  L   L AF      
Sbjct:   107 NNLGYILATQGRLDESADCFNRAIAIEPGFAAAYHNLGTTLRHQGRLDETLAAFRTAHAI 166

Query:   286 DPNNKV 291
             +P++ V
Sbjct:   167 NPHDPV 172

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080722 SPY "SPINDLY" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 30/77 (38%), Positives = 42/77 (54%)

Query:   220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
             + AQ  N LGV Y  +GK+D   S  E A+   P Y  A+NNLG  Y    ++  A+ A+
Sbjct:   361 NFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITMAIDAY 420

Query:   280 EEVLLFDPNNKVARPRR 296
             EE L  DP+++ A   R
Sbjct:   421 EECLKIDPDSRNAGQNR 437

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=TAS

GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2139109 Hop3 "AT4G12400" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
 Identities = 31/120 (25%), Positives = 55/120 (45%)

Query:   171 KELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGV 230
             KEL++Q       A E  E G    + + YP A K+  +AI++   D     + Y+    
Sbjct:   356 KELEQQEYFDPTIAEEEREKGNGFFKEQKYPEAVKHYSEAIKRNPND----VRAYSNRAA 411

Query:   231 SYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK 290
              Y + G L +G+   E  ++L P +   ++  G      K+   A++ ++E L  DP N+
Sbjct:   412 CYTKLGALPEGLKDAEKCIELDPSFTKGYSRKGAIQFFMKEYDKAMETYQEGLKHDPKNQ 471

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

UNIPROTKB|Q3AFJ1 CHY_0221 "TPR domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 113 (44.8 bits), Expect = 0.00020, P = 0.00020
 Identities = 33/116 (28%), Positives = 49/116 (42%)

Query:   174 QEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV 233
             +++V     +   Y +LG    ++K Y  A     +AI+     D+     Y  LG+ Y+
Sbjct:    60 KQKVAQDPKNPKNYVDLGWGYFKKKDYNNALSQYKKAIDL----DKKYYPAYLNLGILYI 115

Query:   234 REGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
               GK D   +  + A+ LQP    A  NLG AY K      ALK   E     P +
Sbjct:   116 ETGKYDLAANTLKNAIALQPKSSNAHLNLGIAYTKLGKYNEALKELNEAYKLSPGS 171

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0221 CHY_0221 "TPR domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 113 (44.8 bits), Expect = 0.00020, P = 0.00020
 Identities = 33/116 (28%), Positives = 49/116 (42%)

Query:   174 QEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV 233
             +++V     +   Y +LG    ++K Y  A     +AI+     D+     Y  LG+ Y+
Sbjct:    60 KQKVAQDPKNPKNYVDLGWGYFKKKDYNNALSQYKKAIDL----DKKYYPAYLNLGILYI 115

Query:   234 REGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
               GK D   +  + A+ LQP    A  NLG AY K      ALK   E     P +
Sbjct:   116 ETGKYDLAANTLKNAIALQPKSSNAHLNLGIAYTKLGKYNEALKELNEAYKLSPGS 171

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q608I2 MCA1509 "TPR domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 121 (47.7 bits), Expect = 0.00022, P = 0.00022
 Identities = 33/100 (33%), Positives = 52/100 (52%)

Query:   191 GAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVK 250
             G V LR+     A   + +A+E     ++ L   Y  LG +Y+ +G +D GI   + A +
Sbjct:    58 GVVALRKGQNSRAVALISKALEY--APNESL--YYFNLGNAYLADGAIDLGIQALQDATR 113

Query:   251 LQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK 290
             L P  + AW NLG A  + K    A+ AFE +L  DP+++
Sbjct:   114 LDPERMEAWMNLGLALVEAKRHPEAVAAFERLLEIDPDHE 153

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.1__2466__AT1G22700.2	annotation not avaliable (291 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.7__557__AT4G35250.1	annotation not avaliable (400 aa)				•			•		0.499
	scaffold_503605.1	annotation not avaliable (275 aa)	•			•					0.420
	fgenesh2_kg.6__1467__AT5G14910.1	annotation not avaliable (178 aa)				•					0.414
	scaffold_202477.1	annotation not avaliable (145 aa)				•					0.409
	fgenesh2_kg.3__2587__AT3G23700.1	annotation not avaliable (392 aa)				•					0.408
	fgenesh2_kg.8__1242__AT5G53490.1	annotation not avaliable (236 aa)				•					0.404
	fgenesh2_kg.5__435__AT3G26710.1	annotation not avaliable (267 aa)				•					0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-15
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-11
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-10
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-09
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-08
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	5e-08
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	3e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-06
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	5e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	7e-06
COG3071	400	COG3071, HemY, Uncharacterized enzyme of heme bios	9e-06
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	1e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-05
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	3e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-04
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	2e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-04
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	4e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 70.9 bits (174), Expect = 1e-15
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQF 245
               LG +  +   Y  A +Y  +A+E     D D A  Y  L  +Y + GK ++ +  +
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALEL----DPDNADAYYNLAAAYYKLGKYEEALEDY 57

Query: 246 ETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
           E A++L P    A+ NLG AY K    + AL+A+E+ L  DPN
Sbjct: 58  EKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK-KKDLKSALKA 278
           D A+    LG +  + G  D+ I  +E A++L P    A+ NL  AY K  KD + AL+ 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 279 FEEVLLFDP 287
            E+ L  DP
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 54.7 bits (132), Expect = 8e-10
 Identities = 23/71 (32%), Positives = 36/71 (50%)

Query: 223 QVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEV 282
           +    LG  Y + G  D+ +  +E A++L P    A+ NL  AY K    + AL+ +E+ 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 283 LLFDPNNKVAR 293
           L  DP+N  A 
Sbjct: 61  LELDPDNAKAY 71

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 28/85 (32%), Positives = 44/85 (51%)

Query: 208 LQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE 267
           L A +K +    D A ++N LG  Y+ +G L K    FE A+ ++P +  A  NL     
Sbjct: 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI 510

Query: 268 KKKDLKSALKAFEEVLLFDPNNKVA 292
           ++ +   A++ FE+VL  DP N  A
Sbjct: 511 QEGNPDDAIQRFEKVLTIDPKNLRA 535

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-------PGYVTAWNNLGDAYEKKK 270
             DLA   N L +   R G  D+ +   E A++L        P    A NNL   Y    
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 271 DLKSALKAFEEVL 283
           D   AL+  E+ L
Sbjct: 61  DYDEALEYLEKAL 73

Length = 78

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD 286
           AL  + +R G  D+ ++  E A+   P    A   LG+A  ++  L  A       L  D
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Query: 287 PNN 289
           P++
Sbjct: 62  PDD 64

Length = 65

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A    +L    L +     A + L +A+E     D D    Y AL + Y + G+L+K   
Sbjct: 31  AKIRVQLALGYLEQGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGELEKAED 86

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE 280
            F  A+ L P      NN G    ++   + A++ FE
Sbjct: 87  SFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE 123

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAV 249
           L  + LR      A  +L +A E    + Q++     AL   Y+ +G+L K ++    A 
Sbjct: 539 LAGLYLRTGNEEEAVAWLEKAAEL---NPQEIEP-ALALAQYYLGKGQLKKALAILNEAA 594

Query: 250 KLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
              P    AW  LG A     DL  A+ +F+++L   P++ +A
Sbjct: 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 171 KELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGV 230
           ++  E     +  A     LGA++     Y  A + L +A++    DD   A+    LG+
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD---AEALLNLGL 210

Query: 231 SYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
            Y++ GK ++ +  +E A++L P    A  NL     +    + AL+A E+ L  DP+
Sbjct: 211 LYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268

Length = 291

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 42.4 bits (101), Expect = 5e-06
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 258 AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
           A  NLG+AY K      AL+ +E+ L  +PNN
Sbjct: 3   ALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK-LDKG 241
           +A     LG  + +   Y  A +   +A+E     D D A+ Y  L ++Y++ GK  ++ 
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALEL----DPDNAEAYYNLALAYLKLGKDYEEA 57

Query: 242 ISQFETAVKLQP 253
           +   E A++L P
Sbjct: 58  LEDLEKALELDP 69

Length = 69

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 42.0 bits (100), Expect = 7e-06
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 258 AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
           A  NLG+AY K  D   AL+ +E+ L  DPNN
Sbjct: 3   ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 207 LLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY 266
           L++A EKW     +   + + LG   ++     K     E A+KL+P   + +  L DA 
Sbjct: 313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADAL 371

Query: 267 EKKKDLKSALKAFEEVLL 284
           ++  + + A +   E LL
Sbjct: 372 DQLGEPEEAEQVRREALL 389

Length = 400

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
           A++   L + Y+ +G L+      + A++  P    A+  L   Y++  +L+ A  +F  
Sbjct: 31  AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90

Query: 282 VLLFDPNN 289
            L  +PNN
Sbjct: 91  ALTLNPNN 98

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 54/229 (23%), Positives = 87/229 (37%), Gaps = 5/229 (2%)

Query: 80  MRKLLAIRDKNVKRLIILASAFSFGSSSWLISARVANASENVQMDAVYEIGELFELGIQL 139
              LL +  +  + L +L  A     +S L    +  A   +++  + E  EL E  ++L
Sbjct: 29  GLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL 88

Query: 140 SYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKF 199
             L  L   L      +         L+L  K L        A   E       +     
Sbjct: 89  ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA---EALLALGALYELGD 145

Query: 200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG-YVTA 258
           Y  A +   +A+E  D +  +LA+   ALG      G+ ++ +   E A+KL P     A
Sbjct: 146 YEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204

Query: 259 WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK 307
             NLG  Y K    + AL+ +E+ L  DP+N  A      L   +  Y+
Sbjct: 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE 253

Length = 291

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 258 AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
           A  NLG AY K  D + AL+A+E+ L  DPNN
Sbjct: 3   ALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 18/177 (10%)

Query: 119 ENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQE--Q 176
                +A+  +     L       L LLG             L   + + +A+ L +  +
Sbjct: 342 LGRVDEAIATLSPALGLDPDDPAALSLLG----------EAYLALGDFEKAAEYLAKATE 391

Query: 177 VRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG 236
           +   +A+A    +LG   L +     A   L  A +     D +L +    L +SY+R G
Sbjct: 392 LDPENAAA--RTQLGISKLSQGDPSEAIADLETAAQL----DPELGRADLLLILSYLRSG 445

Query: 237 KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
           + DK ++  +   K QP   +  N LG  Y  K DL  A +AFE+ L  +P+   A 
Sbjct: 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIE---KWDGDDQDLAQVYNALGVSYVREGKLDK 240
           A     L  V+ R   Y  A + L +A+E   +   D  + A+  N L   Y+  G  D+
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64

Query: 241 GISQFETAVKLQP 253
            +   E A+ L+ 
Sbjct: 65  ALEYLEKALALRE 77

Length = 78

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV 224
           EL+ +    +  +     +       G  + ++  Y  A +   QAIE     D    Q 
Sbjct: 80  ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-----DPLYPQP 134

Query: 225 YNAL---GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE 280
             +L   G+  ++ G  DK       A+++ P    +   L + Y  +   K A    E
Sbjct: 135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE 193

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAV 249
           L   +L       A    ++ +E W     + A +  AL   Y+ +   DK I  ++T V
Sbjct: 742 LHRALLASGNTAEA----VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV 797

Query: 250 KLQPGYVTAWNNLGDAYEKKKD---LKSALKAFE 280
           K  P      NNL   Y + KD   L+ A +A +
Sbjct: 798 KKAPDNAVVLNNLAWLYLELKDPRALEYAERALK 831

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
             A+  LG  Y +  D + A + +E+ L  DPNN
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34

Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 22/73 (30%), Positives = 35/73 (47%)

Query: 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
           D  + +  LG + +  G L+K +S F+  + LQP    A   L DAY   K+   A+ + 
Sbjct: 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL 658

Query: 280 EEVLLFDPNNKVA 292
           +  L   P+N  A
Sbjct: 659 KRALELKPDNTEA 671

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 258 AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
           A  NLG+A  K  D   A++A+E+ L  DP+N  A 
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAY 40

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 8/117 (6%)

Query: 183 SATEYFEL----GAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL 238
           SA EY       GA   +      A +YL Q ++       +  Q    L    +R G++
Sbjct: 290 SAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKY----APNSHQARRLLASIQLRLGRV 345

Query: 239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR 295
           D+ I+    A+ L P    A + LG+AY    D + A +   +    DP N  AR +
Sbjct: 346 DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query: 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276
           D  + A+    L + Y+++G   +     E A++  P Y  A       Y+K  +   A 
Sbjct: 30  DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLAD 89

Query: 277 KAFEEVLLFDPNN 289
           +++ + L   PNN
Sbjct: 90  ESYRKALSLAPNN 102

Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.88
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.87
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.8
PRK15359	144	type III secretion system chaperone protein SscB;	99.79
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.79
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.79
PRK12370	553	invasion protein regulator; Provisional	99.78
KOG1126	638	consensus DNA-binding cell division cycle control	99.77
KOG1126	638	consensus DNA-binding cell division cycle control	99.77
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.76
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.76
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.74
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.74
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.73
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.73
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.73
PRK11189	296	lipoprotein NlpI; Provisional	99.73
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.72
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.71
PRK12370	553	invasion protein regulator; Provisional	99.7
KOG0553	304	consensus TPR repeat-containing protein [General f	99.7
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.7
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.69
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.67
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.66
PRK11189	296	lipoprotein NlpI; Provisional	99.66
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.66
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.66
PRK15359	144	type III secretion system chaperone protein SscB;	99.65
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.64
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.63
KOG1125	579	consensus TPR repeat-containing protein [General f	99.62
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.62
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.61
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.6
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.59
KOG1125	579	consensus TPR repeat-containing protein [General f	99.59
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.57
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.57
KOG0553	304	consensus TPR repeat-containing protein [General f	99.56
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.56
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.55
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.55
PLN02789	320	farnesyltranstransferase	99.54
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.52
PLN02789	320	farnesyltranstransferase	99.52
KOG1129	478	consensus TPR repeat-containing protein [General f	99.51
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.51
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.51
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.51
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.49
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.49
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.48
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.47
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.47
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.45
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.44
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.44
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.44
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.43
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.42
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.41
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.41
KOG1129	478	consensus TPR repeat-containing protein [General f	99.41
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.4
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.4
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.4
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.39
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.38
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.37
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.35
KOG2076	895	consensus RNA polymerase III transcription factor	99.35
KOG2076	895	consensus RNA polymerase III transcription factor	99.34
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.34
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.33
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.32
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.32
PRK14574	822	hmsH outer membrane protein; Provisional	99.31
PRK15331	165	chaperone protein SicA; Provisional	99.3
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.3
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.3
KOG2003	840	consensus TPR repeat-containing protein [General f	99.3
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.3
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.29
PRK14574	822	hmsH outer membrane protein; Provisional	99.29
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.29
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.28
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.28
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.27
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.27
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.27
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.27
KOG2003	840	consensus TPR repeat-containing protein [General f	99.27
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.26
PRK10803	263	tol-pal system protein YbgF; Provisional	99.26
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.25
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.25
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.24
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.22
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.21
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.21
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.21
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.2
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.2
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.17
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.17
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.16
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.14
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.14
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.13
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.12
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.12
PRK11906	458	transcriptional regulator; Provisional	99.12
KOG4234	271	consensus TPR repeat-containing protein [General f	99.11
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.09
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.09
PF12688	120	TPR_5: Tetratrico peptide repeat	99.09
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.08
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.08
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.08
PRK10803	263	tol-pal system protein YbgF; Provisional	99.08
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.07
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.06
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.05
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.04
PF13371	73	TPR_9: Tetratricopeptide repeat	99.04
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.04
PF13512	142	TPR_18: Tetratricopeptide repeat	99.03
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.99
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.99
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.96
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.96
PRK15331	165	chaperone protein SicA; Provisional	98.95
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.95
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.93
PRK11906	458	transcriptional regulator; Provisional	98.91
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.9
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.89
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.88
PF13371	73	TPR_9: Tetratricopeptide repeat	98.88
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.88
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.88
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.87
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.87
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.86
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.86
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.85
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.85
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.82
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.81
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.81
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.8
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.8
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.79
PF12688	120	TPR_5: Tetratrico peptide repeat	98.76
KOG4234	271	consensus TPR repeat-containing protein [General f	98.74
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.74
KOG4555	175	consensus TPR repeat-containing protein [Function	98.73
PF13512	142	TPR_18: Tetratricopeptide repeat	98.72
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.72
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.71
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.68
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.67
PLN03218	1060	maturation of RBCL 1; Provisional	98.66
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.65
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.64
KOG4555	175	consensus TPR repeat-containing protein [Function	98.64
PLN03218	1060	maturation of RBCL 1; Provisional	98.63
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.63
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.61
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.61
PLN03077	857	Protein ECB2; Provisional	98.58
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.57
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.55
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.55
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.53
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.52
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.46
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.46
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.46
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.45
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.45
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.43
PF13428	44	TPR_14: Tetratricopeptide repeat	98.42
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.38
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.38
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.37
PRK04841	903	transcriptional regulator MalT; Provisional	98.36
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.36
PF13428	44	TPR_14: Tetratricopeptide repeat	98.35
PF13431	34	TPR_17: Tetratricopeptide repeat	98.32
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.29
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.26
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.26
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.24
PLN03077	857	Protein ECB2; Provisional	98.22
PRK04841	903	transcriptional regulator MalT; Provisional	98.22
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.21
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.21
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.2
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.18
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.17
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.15
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.15
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.15
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.13
KOG1586	288	consensus Protein required for fusion of vesicles	98.12
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.11
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.1
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.09
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.09
KOG2471	696	consensus TPR repeat-containing protein [General f	98.08
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.07
PF13431	34	TPR_17: Tetratricopeptide repeat	98.05
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.04
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.04
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.02
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.02
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.01
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.95
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.88
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.85
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.85
KOG1586	288	consensus Protein required for fusion of vesicles	97.82
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.78
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.77
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.75
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.74
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.68
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.68
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.65
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.64
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.64
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.63
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.58
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.58
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.51
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.49
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.46
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.42
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.39
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.38
PRK10941	269	hypothetical protein; Provisional	97.35
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.34
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.33
KOG1585	308	consensus Protein required for fusion of vesicles	97.32
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.32
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.31
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.3
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.29
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.29
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.26
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.25
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.21
KOG2471	696	consensus TPR repeat-containing protein [General f	97.2
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.2
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.12
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	97.08
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	97.06
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.02
KOG3364	149	consensus Membrane protein involved in organellar	96.99
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.99
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.97
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.96
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.96
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.95
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.9
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.89
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.8
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.79
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.74
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.71
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.7
KOG1585	308	consensus Protein required for fusion of vesicles	96.7
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.6
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.57
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.52
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.52
PRK10941	269	hypothetical protein; Provisional	96.5
KOG1310	758	consensus WD40 repeat protein [General function pr	96.49
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.46
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.41
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.39
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.38
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.31
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.29
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.28
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.2
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.17
KOG3364	149	consensus Membrane protein involved in organellar	96.16
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.16
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.13
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.11
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.08
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.08
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.05
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.03
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.02
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.01
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.92
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.83
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	95.81
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.75
COG2912	269	Uncharacterized conserved protein [Function unknow	95.59
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.59
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.39
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.18
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.11
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.07
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.97
KOG1258	577	consensus mRNA processing protein [RNA processing	94.96
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	94.92
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	94.92
KOG1310	758	consensus WD40 repeat protein [General function pr	94.72
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.57
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.55
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.53
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.41
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.37
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.36
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.28
KOG2581	493	consensus 26S proteasome regulatory complex, subun	94.15
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.01
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.77
KOG1258	577	consensus mRNA processing protein [RNA processing	93.73
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.63
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	93.58
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	93.54
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.52
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	93.51
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.46
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.39
COG2912	269	Uncharacterized conserved protein [Function unknow	93.18
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	93.14
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.11
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.07
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.01
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.9
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	92.86
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.8
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.77
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	92.68
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	92.36
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.3
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	92.22
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.9
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	91.84
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.66
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	91.54
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	91.54
COG3947	361	Response regulator containing CheY-like receiver a	91.21
KOG0529	421	consensus Protein geranylgeranyltransferase type I	91.04
KOG4014	248	consensus Uncharacterized conserved protein (conta	90.54
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	90.4
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.4
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	90.37
KOG4014	248	consensus Uncharacterized conserved protein (conta	89.9
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	89.84
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.83
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.8
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.39
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.35
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.2
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	88.48
KOG2581	493	consensus 26S proteasome regulatory complex, subun	88.4
KOG2041	1189	consensus WD40 repeat protein [General function pr	88.24
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.16
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	87.96
KOG2041	1189	consensus WD40 repeat protein [General function pr	87.81
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	87.74
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	87.58
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	87.36
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	86.88
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	86.31
COG3947	361	Response regulator containing CheY-like receiver a	85.59
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.36
PF04212	69	MIT: MIT (microtubule interacting and transport) d	84.94
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	84.59
PHA02537	230	M terminase endonuclease subunit; Provisional	84.35
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	84.04
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	83.75
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	83.62
PRK11619	644	lytic murein transglycosylase; Provisional	83.31
COG5159	421	RPN6 26S proteasome regulatory complex component [	82.91
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	82.88
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	82.8
KOG2758	432	consensus Translation initiation factor 3, subunit	82.79
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	82.25
PHA02537	230	M terminase endonuclease subunit; Provisional	81.62
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	81.56
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	81.29
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	80.98
PF12854	34	PPR_1: PPR repeat	80.95
KOG2422	665	consensus Uncharacterized conserved protein [Funct	80.87

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=9.7e-22  Score=177.93  Aligned_cols=177  Identities=16%  Similarity=0.228  Sum_probs=136.0

Q ss_pred             ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 021175          117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLR  196 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  196 (316)
                      .|..+-|.+.|+.+....|.-..       ++.+++....     +.|+..+|..+|.+++...|+.+++.+|+|+++.+
T Consensus       299 qG~ldlAI~~Ykral~~~P~F~~-------Ay~NlanALk-----d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E  366 (966)
T KOG4626|consen  299 QGLLDLAIDTYKRALELQPNFPD-------AYNNLANALK-----DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE  366 (966)
T ss_pred             cccHHHHHHHHHHHHhcCCCchH-------HHhHHHHHHH-----hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            34455555556544444444442       2333333333     67888888888888888888888888888888888


Q ss_pred             cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 021175          197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL  276 (316)
Q Consensus       197 ~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  276 (316)
                      +|..++|...|+++++    ..|+.+.++.|||.+|.++|++++|+.+|+++++++|..++++.|+|..|..+|+.+.|+
T Consensus       367 ~~~~e~A~~ly~~al~----v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~  442 (966)
T KOG4626|consen  367 QGKIEEATRLYLKALE----VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI  442 (966)
T ss_pred             hccchHHHHHHHHHHh----hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence            8888888888888888    688888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          277 KAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       277 ~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      .+|.+++.++|..++++.+|+.+++..|+..+|
T Consensus       443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~A  475 (966)
T KOG4626|consen  443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEA  475 (966)
T ss_pred             HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHH
Confidence            888888888888888888888888888877654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=8.7e-22  Score=178.25  Aligned_cols=145  Identities=19%  Similarity=0.260  Sum_probs=124.8

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      +.+|..+.|+..|+++++..|+.+++++|+|+++...|+.+||+++|.+++.    +.|+++.+.+|||.+|.++|++++
T Consensus       297 yeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~----l~p~hadam~NLgni~~E~~~~e~  372 (966)
T KOG4626|consen  297 YEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR----LCPNHADAMNNLGNIYREQGKIEE  372 (966)
T ss_pred             eccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhccchH
Confidence            3678888888888888888888888888888888888888888888888888    688888888888888888888888


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |...|+++++..|+.+.++.|||.+|.++|++++|+.+|+++++++|..++++.++|..++.+|+..+|
T Consensus       373 A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A  441 (966)
T KOG4626|consen  373 ATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA  441 (966)
T ss_pred             HHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888877654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.80  E-value=3.3e-18  Score=138.58  Aligned_cols=145  Identities=17%  Similarity=0.129  Sum_probs=137.7

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      +..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++|+.    ++|++.++++|.|..++.+|++++
T Consensus        46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls----l~p~~GdVLNNYG~FLC~qg~~~e  121 (250)
T COG3063          46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS----LAPNNGDVLNNYGAFLCAQGRPEE  121 (250)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh----cCCCccchhhhhhHHHHhCCChHH
Confidence            3999999999999999999999999999999999999999999999999999    799999999999999999999999


Q ss_pred             HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          241 GISQFETAVKL--QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       241 A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |...|++|+..  .|..+..+-|+|.|..++|+++.|.++|+++++++|+++.+...++..+...|++-.|
T Consensus       122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence            99999999983  3455789999999999999999999999999999999999999999999999988655

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.79  E-value=2.7e-18  Score=134.88  Aligned_cols=128  Identities=12%  Similarity=0.043  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 021175          169 SAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETA  248 (316)
Q Consensus       169 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  248 (316)
                      -...++++++.+|+.   +..+|.++...|++++|+.+|++++.    .+|.+..++.++|.++...|++++|+..|+++
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A   84 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVM----AQPWSWRAHIALAGTWMMLKEYTTAINFYGHA   84 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            356789999999875   66789999999999999999999999    79999999999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175          249 VKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV  303 (316)
Q Consensus       249 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~  303 (316)
                      ++++|+++.+++++|.++..+|++++|+..|+++++++|+++..+.+++.+...+
T Consensus        85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998877654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.79  E-value=1.2e-17  Score=161.78  Aligned_cols=154  Identities=13%  Similarity=0.139  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN  226 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~  226 (316)
                      ++..+|..+.     ..|++++|+..++++++.+|+...++..+|.++...|++++|+..++++++    .+|+++.+++
T Consensus       333 a~~~lg~~~~-----~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~----~~p~~~~~~~  403 (615)
T TIGR00990       333 ALNLRGTFKC-----LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK----LNSEDPDIYY  403 (615)
T ss_pred             HHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHH
Confidence            4444455554     899999999999999999999999999999999999999999999999999    6999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      ++|.++...|++++|++.|+++++++|++..++.++|.++..+|++++|+..|+++++..|+++.++..++.++...|++
T Consensus       404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~  483 (615)
T TIGR00990       404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF  483 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q 021175          307 KGV  309 (316)
Q Consensus       307 ~~A  309 (316)
                      ++|
T Consensus       484 ~~A  486 (615)
T TIGR00990       484 DEA  486 (615)
T ss_pred             HHH
Confidence            765

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=3.8e-18  Score=150.24  Aligned_cols=144  Identities=19%  Similarity=0.263  Sum_probs=140.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      -.++.++|+.+|++++++||....+|..+|.-|..+++...|++.|++|++    ++|.+..+|+.||.+|.-++...=|
T Consensus       342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd----i~p~DyRAWYGLGQaYeim~Mh~Ya  417 (559)
T KOG1155|consen  342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD----INPRDYRAWYGLGQAYEIMKMHFYA  417 (559)
T ss_pred             HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh----cCchhHHHHhhhhHHHHHhcchHHH
Confidence            678899999999999999999999999999999999999999999999999    8999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +-+|++|++..|+|...|..||.||.+.++.++|+++|++++.....+..++..+++++++++++++|
T Consensus       418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  418 LYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998665

>PRK12370 invasion protein regulator; Provisional

Probab=99.78  E-value=1.3e-17  Score=159.04  Aligned_cols=184  Identities=11%  Similarity=-0.027  Sum_probs=153.1

Q ss_pred             chHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 021175          119 ENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK  198 (316)
Q Consensus       119 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  198 (316)
                      +...|..+++.+...+|.....+......+...+...   .....+++++|+..++++++.+|+++.++..+|.++...|
T Consensus       276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g---~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMG---IFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC---CcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence            3456666777777777766544433322222111100   0114567899999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 021175          199 FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKA  278 (316)
Q Consensus       199 ~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  278 (316)
                      ++++|+..|+++++    .+|+++.+++.+|.++...|++++|++.++++++++|.++..++.++.++...|++++|+..
T Consensus       353 ~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~  428 (553)
T PRK12370        353 EYIVGSLLFKQANL----LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRL  428 (553)
T ss_pred             CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence            99999999999999    79999999999999999999999999999999999999988888888888889999999999


Q ss_pred             HHHHHhcC-CCChhHHHHHHHHHhhCCCCCCC
Q 021175          279 FEEVLLFD-PNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       279 ~~~al~~~-p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++++++.+ |+++.++..++.++...|++++|
T Consensus       429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA  460 (553)
T PRK12370        429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELA  460 (553)
T ss_pred             HHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence            99999875 78899999999999999998766

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=3.7e-18  Score=156.34  Aligned_cols=179  Identities=13%  Similarity=0.138  Sum_probs=155.2

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 021175          115 ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVM  194 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  194 (316)
                      ...+++++|..+|+.+..+++.-.-.+       ..+     +.+.....++|+|...|++++..+|.+-.+|+.+|.+|
T Consensus       432 SLQkdh~~Aik~f~RAiQldp~faYay-------TLl-----GhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy  499 (638)
T KOG1126|consen  432 SLQKDHDTAIKCFKRAIQLDPRFAYAY-------TLL-----GHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY  499 (638)
T ss_pred             hhhhHHHHHHHHHHHhhccCCccchhh-------hhc-----CChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence            345678888888886666666554222       222     33344788999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 021175          195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS  274 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  274 (316)
                      .++++++.|+-+|++|++    ++|.+......+|.++.+.|+.++|+..+++|+.++|.++-..+..|.++...+++++
T Consensus       500 ~Kqek~e~Ae~~fqkA~~----INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e  575 (638)
T KOG1126|consen  500 LKQEKLEFAEFHFQKAVE----INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE  575 (638)
T ss_pred             eccchhhHHHHHHHhhhc----CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence            999999999999999999    7999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          275 ALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       275 A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |+..+++..++-|++..++..+++++.++|+.+.|
T Consensus       576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A  610 (638)
T KOG1126|consen  576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLA  610 (638)
T ss_pred             HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence            99999999999999999999999999999987655

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=2e-18  Score=158.01  Aligned_cols=154  Identities=20%  Similarity=0.322  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN  226 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~  226 (316)
                      +|...|+.|.     .+++++.|++.|+++++++|+.+.+|..+|.-+....++|.|..+|++|+.    .+|.+..+|+
T Consensus       423 sWca~GNcfS-----LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwY  493 (638)
T KOG1126|consen  423 SWCALGNCFS-----LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWY  493 (638)
T ss_pred             HHHHhcchhh-----hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHH
Confidence            4556677777     889999999999999999999999999999999999999999999999999    7999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      .+|.+|.++++++.|.-+|++|++++|.+......+|.++.++|+.++|+..|++|+.++|.++-..+..+.++..++++
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~  573 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY  573 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q 021175          307 KGV  309 (316)
Q Consensus       307 ~~A  309 (316)
                      ++|
T Consensus       574 ~ea  576 (638)
T KOG1126|consen  574 VEA  576 (638)
T ss_pred             HHH
Confidence            766

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.1e-16  Score=144.19  Aligned_cols=189  Identities=22%  Similarity=0.291  Sum_probs=165.7

Q ss_pred             hhhhhHHHHHHHH-hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcC
Q 021175          102 SFGSSSWLISARV-ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSG  180 (316)
Q Consensus       102 ~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  180 (316)
                      ..-..+|+.+++. +..++.+++.++|..+.++-++..++.+.+            +-++...++++.|.+.|.+++.+.
T Consensus       343 ~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl------------gmey~~t~n~kLAe~Ff~~A~ai~  410 (611)
T KOG1173|consen  343 PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL------------GMEYMRTNNLKLAEKFFKQALAIA  410 (611)
T ss_pred             ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH------------HHHHHHhccHHHHHHHHHHHHhcC
Confidence            4445678888888 788999999999999999999988666533            344558999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 021175          181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ---DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVT  257 (316)
Q Consensus       181 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  257 (316)
                      |.++-....+|.+.+..+.|.+|..+|+++++..+...+   .-...+.|||.++.+.+++++|+..+++++.+.|.++.
T Consensus       411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~  490 (611)
T KOG1173|consen  411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS  490 (611)
T ss_pred             CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence            999999999999999999999999999999965443232   34567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          258 AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       258 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      .+..+|.+|..+|+++.|+++|.+++.++|++..+...|+...+.
T Consensus       491 ~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  491 THASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998887777765444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.76  E-value=1.8e-16  Score=131.09  Aligned_cols=134  Identities=19%  Similarity=0.243  Sum_probs=122.8

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH-HHcCC--H
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY-VREGK--L  238 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~-~~~g~--~  238 (316)
                      ..++.++++..++++++.+|++++.|..+|.++...|++++|+..|+++++    ++|+++.++.++|.++ ...|+  +
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~~~~~~~lA~aL~~~~g~~~~  126 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGENAELYAALATVLYYQAGQHMT  126 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcCCCCc
Confidence            356778999999999999999999999999999999999999999999999    7999999999999975 67787  5


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      ++|.+.++++++.+|++..+++++|.++...|++++|+.+|+++++++|.+.+-...+..+
T Consensus       127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i  187 (198)
T PRK10370        127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESI  187 (198)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998876555444443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.3e-16  Score=140.72  Aligned_cols=178  Identities=17%  Similarity=0.193  Sum_probs=158.3

Q ss_pred             ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 021175          117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLR  196 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  196 (316)
                      -++++.|...|+.+..+++...       .++..+|+-|     +..++...|++.|++|++++|.+-.+|+.+|++|.-
T Consensus       343 r~eHEKAv~YFkRALkLNp~~~-------~aWTLmGHEy-----vEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei  410 (559)
T KOG1155|consen  343 RSEHEKAVMYFKRALKLNPKYL-------SAWTLMGHEY-----VEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI  410 (559)
T ss_pred             HHhHHHHHHHHHHHHhcCcchh-------HHHHHhhHHH-----HHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence            3567888888887777777665       3444444444     499999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 021175          197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL  276 (316)
Q Consensus       197 ~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  276 (316)
                      ++...=|+-+|++|++    ..|+++..|..||.||.+.++.++|+++|++|+........++..||..|.++++.++|.
T Consensus       411 m~Mh~YaLyYfqkA~~----~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa  486 (559)
T KOG1155|consen  411 MKMHFYALYYFQKALE----LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA  486 (559)
T ss_pred             hcchHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence            9999999999999999    799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-------cCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175          277 KAFEEVLL-------FDPNNKVARPRRDALKDRVPLYKGVP  310 (316)
Q Consensus       277 ~~~~~al~-------~~p~~~~a~~~l~~l~~~~~~~~~A~  310 (316)
                      .+|++.++       .+|+...+..-|+.-..+.+++++|.
T Consensus       487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As  527 (559)
T KOG1155|consen  487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS  527 (559)
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence            99999998       56666777777888889999988763

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.74  E-value=9.1e-16  Score=129.19  Aligned_cols=180  Identities=13%  Similarity=0.101  Sum_probs=151.7

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++.+.+.+.++.+....+...       ..+..++..+.     ..|++++|++.++++++..|++...+.++|.++.
T Consensus        43 ~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~-----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        43 EQGDLEVAKENLDKALEHDPDDY-------LAYLALALYYQ-----QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccH-------HHHHHHHHHHH-----HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            34566666667764444433332       23333344444     8899999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA  275 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  275 (316)
                      ..|++++|++.++++++..  ..+.....+.++|.++...|++++|.+.++++++.+|++...+..+|.++...|++++|
T Consensus       111 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDP--LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HcccHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999831  13566778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          276 LKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       276 ~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ...++++++..|+++..+..++.+....|+.+++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  222 (234)
T TIGR02521       189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAA  222 (234)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence            9999999999999989988899999988887665

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.73  E-value=3.6e-16  Score=131.70  Aligned_cols=144  Identities=19%  Similarity=0.238  Sum_probs=136.8

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++++|++.++++++.+|++..++..+|.++...|++++|++.++++++    ..|.+..++.++|.++...|++++|
T Consensus        43 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~g~~~~A  118 (234)
T TIGR02521        43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT----LNPNNGDVLNNYGTFLCQQGKYEQA  118 (234)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHcccHHHH
Confidence            899999999999999999999999999999999999999999999999999    6888899999999999999999999


Q ss_pred             HHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          242 ISQFETAVKLQ--PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       242 ~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++.++++++..  |.....+.++|.++...|++++|...++++++.+|++..++..++.++...|++++|
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       119 MQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            99999999864  556788999999999999999999999999999999999999999999999998765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.73  E-value=6.6e-16  Score=149.57  Aligned_cols=162  Identities=13%  Similarity=0.212  Sum_probs=142.4

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++.+.|...++.+....+....       +++.++..+.     ..|++++|+..++++++.+|+++.+++.+|.++.
T Consensus       343 ~~g~~~eA~~~~~kal~l~P~~~~-------~~~~la~~~~-----~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~  410 (615)
T TIGR00990       343 LKGKHLEALADLSKSIELDPRVTQ-------SYIKRASMNL-----ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF  410 (615)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCcHH-------HHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            356677777788766655555442       3333444444     7899999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA  275 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  275 (316)
                      ..|++++|+.+|+++++    .+|++..++.++|.++..+|++++|+..|+++++.+|+++.++..+|.++..+|++++|
T Consensus       411 ~~g~~~~A~~~~~kal~----l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A  486 (615)
T TIGR00990       411 IKGEFAQAGKDYQKSID----LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA  486 (615)
T ss_pred             HcCCHHHHHHHHHHHHH----cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence            99999999999999999    79999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHH
Q 021175          276 LKAFEEVLLFDPNNKVAR  293 (316)
Q Consensus       276 ~~~~~~al~~~p~~~~a~  293 (316)
                      ++.|+++++++|++...+
T Consensus       487 ~~~~~~Al~l~p~~~~~~  504 (615)
T TIGR00990       487 IEKFDTAIELEKETKPMY  504 (615)
T ss_pred             HHHHHHHHhcCCcccccc
Confidence            999999999999865443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.73  E-value=3e-16  Score=156.44  Aligned_cols=142  Identities=17%  Similarity=0.179  Sum_probs=129.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++++|+..++++++.+|+ +.++.++|.++.+.|++++|++.|+++++    .+|+++.++.++|.++...|++++|
T Consensus       588 ~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        588 IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALE----LEPNNSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            459999999999999999996 88999999999999999999999999999    7999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~  308 (316)
                      ++.|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++.......+.+..+..+++.
T Consensus       663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~  729 (987)
T PRK09782        663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRR  729 (987)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888888877776665543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.73  E-value=6e-16  Score=136.30  Aligned_cols=101  Identities=14%  Similarity=0.128  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN  226 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~  226 (316)
                      .+...|..+.     ..|++++|+..|+++++.+|+++.+++++|.++...|++++|++.|+++++    ++|++..++.
T Consensus        66 ~~~~~g~~~~-----~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~  136 (296)
T PRK11189         66 LHYERGVLYD-----SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAYL  136 (296)
T ss_pred             HHHHHHHHHH-----HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHH
Confidence            3444455554     789999999999999999999999999999999999999999999999999    6999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 021175          227 ALGVSYVREGKLDKGISQFETAVKLQPGYV  256 (316)
Q Consensus       227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  256 (316)
                      ++|.++...|++++|++.++++++.+|+++
T Consensus       137 ~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        137 NRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999888887763

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.72  E-value=5e-16  Score=154.82  Aligned_cols=144  Identities=16%  Similarity=0.120  Sum_probs=137.4

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|+..++++++.+|+....+..++......|++++|+..++++++    .+|+ +.++.++|.++.+.|++++
T Consensus       553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~----l~P~-~~a~~~LA~~l~~lG~~de  627 (987)
T PRK09782        553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN----IAPS-ANAYVARATIYRQRHNVPA  627 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCC-HHHHHHHHHHHHHCCCHHH
Confidence            4889999999999999999999988888888888888999999999999999    6886 8999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |++.|+++++++|+++.++.++|.++...|++++|+..|+++++++|+++.++.+++.++...|++++|
T Consensus       628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA  696 (987)
T PRK09782        628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT  696 (987)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.71  E-value=1.6e-15  Score=123.10  Aligned_cols=178  Identities=14%  Similarity=0.110  Sum_probs=154.2

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++..+|....+.+...+|...       .++..++.+|.     ..|+.+.|.+.|+++++++|++.++++|.|..++
T Consensus        47 ~~gd~~~A~~nlekAL~~DPs~~-------~a~~~~A~~Yq-----~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          47 QQGDYAQAKKNLEKALEHDPSYY-------LAHLVRAHYYQ-----KLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccH-------HHHHHHHHHHH-----HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            45677776666775555666555       45555566666     8999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA  275 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  275 (316)
                      .+|++++|...|++|+..  ...+..+..+-|+|.|..+.|+++.|.++|+++++++|+.+.....++..+++.|++-.|
T Consensus       115 ~qg~~~eA~q~F~~Al~~--P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         115 AQGRPEEAMQQFERALAD--PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             hCCChHHHHHHHHHHHhC--CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence            999999999999999981  123456789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHhhCCCCC
Q 021175          276 LKAFEEVLLFDPNNKVARPRRDALKDRVPLYK  307 (316)
Q Consensus       276 ~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~  307 (316)
                      ..++++....-+-..+......++.+.+|+-.
T Consensus       193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~  224 (250)
T COG3063         193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRA  224 (250)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHhccHH
Confidence            99999999888878888888888888888754

>PRK12370 invasion protein regulator; Provisional

Probab=99.70  E-value=1.5e-15  Score=144.92  Aligned_cols=170  Identities=10%  Similarity=-0.100  Sum_probs=146.5

Q ss_pred             hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 021175          120 NVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKF  199 (316)
Q Consensus       120 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  199 (316)
                      ...|...++.+...+|.....       +..+|..+.     ..|++++|+..++++++.+|+++.+++.+|.++...|+
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a-------~~~lg~~~~-----~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~  387 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQA-------LGLLGLINT-----IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ  387 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHH-----HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            556666777666666666533       333344443     78999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Q 021175          200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-PGYVTAWNNLGDAYEKKKDLKSALKA  278 (316)
Q Consensus       200 ~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~  278 (316)
                      +++|+..++++++    .+|.++..++.++.+++..|++++|++.++++++.+ |+++.++.++|.++..+|++++|...
T Consensus       388 ~~eAi~~~~~Al~----l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~  463 (553)
T PRK12370        388 LEEALQTINECLK----LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL  463 (553)
T ss_pred             HHHHHHHHHHHHh----cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            9999999999999    799988887778888888999999999999999875 78899999999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          279 FEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       279 ~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      +++.....|++..+...++..+...|+
T Consensus       464 ~~~~~~~~~~~~~~~~~l~~~~~~~g~  490 (553)
T PRK12370        464 TKEISTQEITGLIAVNLLYAEYCQNSE  490 (553)
T ss_pred             HHHhhhccchhHHHHHHHHHHHhccHH
Confidence            999999999988888888877776664

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=3.7e-16  Score=131.57  Aligned_cols=121  Identities=24%  Similarity=0.378  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG  263 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  263 (316)
                      ++-+-+-|+-.++.++|++|+..|.+||+    ++|.++..|.|.+.+|.++|+++.|++.++.|+.+||++..+|..||
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~----l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG  156 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIE----LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG  156 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            34567788999999999999999999999    79999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCC
Q 021175          264 DAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       264 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~  308 (316)
                      .+|..+|++++|++.|+++++++|++...+.+|....++++.-+.
T Consensus       157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~  201 (304)
T KOG0553|consen  157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKS  201 (304)
T ss_pred             HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999999999999999999888763

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.70  E-value=1.7e-15  Score=146.98  Aligned_cols=146  Identities=11%  Similarity=0.048  Sum_probs=136.6

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPA----ATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE  235 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~  235 (316)
                      +...|++++|+..++++++.+|+++.++.++|.++...|++++    |+..|+++++    .+|+++.++.++|.++...
T Consensus       222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~  297 (656)
T PRK15174        222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----FNSDNVRIVTLYADALIRT  297 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHC
Confidence            4478999999999999999999999999999999999999986    8999999999    6999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |++++|+..++++++++|+++.++.++|.++...|++++|+..|+++++.+|++......++.++...|++++|
T Consensus       298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA  371 (656)
T PRK15174        298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA  371 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999888777788888889988765

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.69  E-value=1.1e-15  Score=118.70  Aligned_cols=126  Identities=13%  Similarity=0.146  Sum_probs=118.0

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          171 KELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       171 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      +.++++++.+|++..+.+.+|..+...|++++|.+.++++++    .+|.++.++.++|.++...|++++|++.++++++
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   79 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA----YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA   79 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467889999999999999999999999999999999999999    6999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 021175          251 LQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALK  300 (316)
Q Consensus       251 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~  300 (316)
                      .+|+++..++++|.++...|++++|+..++++++++|++.........+.
T Consensus        80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  129 (135)
T TIGR02552        80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE  129 (135)
T ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999988665554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.67  E-value=8.1e-15  Score=142.36  Aligned_cols=146  Identities=14%  Similarity=0.114  Sum_probs=132.7

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175          160 VLVRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~  238 (316)
                      +...|++++|+..++++++.+| ........++.++...|++++|+..++++++    .+|+++.+++++|.++...|++
T Consensus       187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~----~~p~~~~~~~~Lg~~l~~~G~~  262 (656)
T PRK15174        187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA----RGLDGAALRRSLGLAYYQSGRS  262 (656)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCCc
Confidence            3467889999999998888876 3344556678889999999999999999999    6899999999999999999999


Q ss_pred             HH----HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          239 DK----GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       239 ~~----A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++    |+..|+++++++|+++.++.++|.++...|++++|+..++++++++|+++.++..++.++...|++++|
T Consensus       263 ~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA  337 (656)
T PRK15174        263 REAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAA  337 (656)
T ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            96    899999999999999999999999999999999999999999999999999999999999999998765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.66  E-value=1.9e-14  Score=148.29  Aligned_cols=190  Identities=16%  Similarity=0.091  Sum_probs=148.0

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSY--LLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAV  193 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  193 (316)
                      ..++.++|...++.+....+......  ...............+......|++++|++.|+++++.+|+++.++..+|.+
T Consensus       315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~  394 (1157)
T PRK11447        315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDV  394 (1157)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45666777777775555444332110  0000000000011123345589999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHH------------------------------------------HHH
Q 021175          194 MLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNAL------------------------------------------GVS  231 (316)
Q Consensus       194 ~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~l------------------------------------------g~~  231 (316)
                      +...|++++|+++|+++++    .+|++..++..+                                          |.+
T Consensus       395 ~~~~g~~~eA~~~y~~aL~----~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~  470 (1157)
T PRK11447        395 AMARKDYAAAERYYQQALR----MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA  470 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            9999999999999999999    577666555444                                          445


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          232 YVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       232 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +...|++++|++.|+++++++|+++.+++.+|.+|...|++++|+..++++++.+|++++++..++......+++++|
T Consensus       471 ~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~A  548 (1157)
T PRK11447        471 LENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAA  548 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999999998887777776544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.66  E-value=4.7e-15  Score=130.64  Aligned_cols=125  Identities=23%  Similarity=0.288  Sum_probs=115.8

Q ss_pred             hhhHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175          163 RRELDLSAKELQEQVRSGD----ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~  238 (316)
                      .+..+.++..+.+++...|    ..+..|+++|.++...|++++|+..|+++++    .+|+++.+++++|.++...|++
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~~~~~g~~  114 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA----LRPDMADAYNYLGIYLTQAGNF  114 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHCCCH
Confidence            4566778888888886444    3477899999999999999999999999999    7999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV  291 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  291 (316)
                      ++|++.|+++++++|++..++.++|.++...|++++|++.++++++++|+++.
T Consensus       115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999999999999999999999999999873

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.66  E-value=7.1e-15  Score=151.45  Aligned_cols=177  Identities=12%  Similarity=0.094  Sum_probs=133.4

Q ss_pred             ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHH-----------
Q 021175          117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASAT-----------  185 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------  185 (316)
                      .++.+.|...++.+....+...       .++..+|..+.     ..|++++|+..|+++++.+|+...           
T Consensus       282 ~g~~~~A~~~l~~aL~~~P~~~-------~a~~~Lg~~~~-----~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~  349 (1157)
T PRK11447        282 SGQGGKAIPELQQAVRANPKDS-------EALGALGQAYS-----QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN  349 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence            3455566666665555444433       23333444444     788888888888888888876532           


Q ss_pred             ---HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175          186 ---EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL  262 (316)
Q Consensus       186 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  262 (316)
                         .....|.++...|++++|++.|+++++    .+|+++.++..+|.++..+|++++|++.|+++++++|++..++..+
T Consensus       350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~----~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L  425 (1157)
T PRK11447        350 RYWLLIQQGDAALKANNLAQAERLYQQARQ----VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL  425 (1157)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence               123457777888888888888888888    6888888888999999999999999999999999999887666554


Q ss_pred             HHH------------------------------------------HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 021175          263 GDA------------------------------------------YEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALK  300 (316)
Q Consensus       263 g~~------------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~  300 (316)
                      +.+                                          +...|++++|++.|+++++++|+++.++..++.++
T Consensus       426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~  505 (1157)
T PRK11447        426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL  505 (1157)
T ss_pred             HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            443                                          44678899999999999999999999999999999


Q ss_pred             hhCCCCCCC
Q 021175          301 DRVPLYKGV  309 (316)
Q Consensus       301 ~~~~~~~~A  309 (316)
                      ...|++++|
T Consensus       506 ~~~G~~~~A  514 (1157)
T PRK11447        506 RQAGQRSQA  514 (1157)
T ss_pred             HHcCCHHHH
Confidence            999888766

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.66  E-value=1.3e-14  Score=123.63  Aligned_cols=149  Identities=16%  Similarity=0.101  Sum_probs=130.3

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASA---TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE-  235 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~-  235 (316)
                      +...|++++|+..+++++..+|+++   .+++.+|.++...|++++|+..++++++..|. +|....+++.+|.++... 
T Consensus        43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~g~~~~~~~  121 (235)
T TIGR03302        43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAYYLRGLSNYNQI  121 (235)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHHHHHHHHHHHhc
Confidence            3389999999999999999999875   68899999999999999999999999995432 334445899999999987 


Q ss_pred             -------CCHHHHHHHHHHHHHhCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 021175          236 -------GKLDKGISQFETAVKLQPGYVTAW-----------------NNLGDAYEKKKDLKSALKAFEEVLLFDPNN--  289 (316)
Q Consensus       236 -------g~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--  289 (316)
                             |++++|++.++++++.+|++..++                 ..+|.+|...|++++|+..++++++..|+.  
T Consensus       122 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (235)
T TIGR03302       122 DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA  201 (235)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence                   899999999999999999985432                 467889999999999999999999997765  


Q ss_pred             -hhHHHHHHHHHhhCCCCCCC
Q 021175          290 -KVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       290 -~~a~~~l~~l~~~~~~~~~A  309 (316)
                       ++++..++.++..+|++++|
T Consensus       202 ~~~a~~~l~~~~~~lg~~~~A  222 (235)
T TIGR03302       202 TEEALARLVEAYLKLGLKDLA  222 (235)
T ss_pred             hHHHHHHHHHHHHHcCCHHHH
Confidence             58999999999999999776

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.65  E-value=8.5e-15  Score=114.97  Aligned_cols=105  Identities=15%  Similarity=0.051  Sum_probs=100.7

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|+..|++++..+|++..++.++|.++...|++++|+..|+++++    .+|+++.+++++|.++...|++++
T Consensus        35 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~----l~p~~~~a~~~lg~~l~~~g~~~e  110 (144)
T PRK15359         35 WQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM----LDASHPEPVYQTGVCLKMMGEPGL  110 (144)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCcHHHHHHHHHHHHcCCHHH
Confidence            4899999999999999999999999999999999999999999999999999    799999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKK  269 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~  269 (316)
                      |++.|+++++++|+++..+.++|.+....
T Consensus       111 Ai~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        111 AREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999998876543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.64  E-value=2e-14  Score=144.02  Aligned_cols=145  Identities=19%  Similarity=0.168  Sum_probs=138.5

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|++.+++.++.+|++..+++.+|.++...|++++|+++|+++++    ..|+++.++.++|.++...|+ ++
T Consensus       747 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~-~~  821 (899)
T TIGR02917       747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK----KAPDNAVVLNNLAWLYLELKD-PR  821 (899)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCc-HH
Confidence            3789999999999999999999999999999999999999999999999999    689999999999999999999 88


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP  310 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~  310 (316)
                      |++.++++++..|+++..+..+|.++...|++++|..+|+++++.+|.++.++..++.++.+.|++++|.
T Consensus       822 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~  891 (899)
T TIGR02917       822 ALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR  891 (899)
T ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999987763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.63  E-value=1e-14  Score=113.14  Aligned_cols=118  Identities=13%  Similarity=0.150  Sum_probs=105.7

Q ss_pred             HHcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175          177 VRSG-DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       177 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  255 (316)
                      ..+. ++.-+..+.+|..++..|++++|+..|+-+..    .+|.++..|++||.++..+|++++|++.|.+|+.++|++
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd  102 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA  102 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            4456 67778899999999999999999999999999    799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCChhHHHHHHH
Q 021175          256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLFD---PNNKVARPRRDA  298 (316)
Q Consensus       256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~l~~  298 (316)
                      +.+++++|.|+...|+.+.|.+.|+.++...   |.+......-..
T Consensus       103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~  148 (157)
T PRK15363        103 PQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK  148 (157)
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence            9999999999999999999999999999886   444444433333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.62  E-value=6.5e-15  Score=133.31  Aligned_cols=159  Identities=18%  Similarity=0.215  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC----------
Q 021175          146 LGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD----------  215 (316)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------  215 (316)
                      .+|..+|....     .+++-..|+..++++++++|++-+++..||..|...|.-.+|..++++-+...+          
T Consensus       320 eAW~~LG~~qa-----ENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~  394 (579)
T KOG1125|consen  320 EAWQKLGITQA-----ENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE  394 (579)
T ss_pred             HHHHHhhhHhh-----hccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence            34555555554     677778899999999999999999999999999999999999999999887431          


Q ss_pred             ---------------------------CCCc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175          216 ---------------------------GDDQ--DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY  266 (316)
Q Consensus       216 ---------------------------~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  266 (316)
                                                 ...|  .+++++..||.+|.-.|+|++|+++|+.|++.+|++...|+.||..+
T Consensus       395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL  474 (579)
T KOG1125|consen  395 NEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL  474 (579)
T ss_pred             cccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence                                       0133  56788999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          267 EKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       267 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ..-.+.++|+..|++|+++.|++..+++++|..+..+|.|++|
T Consensus       475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA  517 (579)
T KOG1125|consen  475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA  517 (579)
T ss_pred             cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence            9999999999999999999999999999999999999999876

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.62  E-value=5.2e-14  Score=128.86  Aligned_cols=144  Identities=21%  Similarity=0.176  Sum_probs=87.7

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCcc-----HHHHHHHHHHHHHHcC
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD-----LAQVYNALGVSYVREG  236 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~-----~~~~~~~lg~~~~~~g  236 (316)
                      ..|++++|+..|+++++.+|....++..++.++...|++++|++.++++++.    .|.     ....+..+|.++...|
T Consensus       119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~  194 (389)
T PRK11788        119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL----GGDSLRVEIAHFYCELAQQALARG  194 (389)
T ss_pred             HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHHhCC
Confidence            5666666666666666666666666666666666666666666666666653    222     1234455666666666


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHhhCCCCCCC
Q 021175          237 KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN-KVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++++|++.++++++.+|++..+++.+|.++...|++++|++.++++++.+|++ ..++..++.++...|++++|
T Consensus       195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A  268 (389)
T PRK11788        195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG  268 (389)
T ss_pred             CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence            66666666666666666666666666666666666666666666666665554 23445555555555555443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.61  E-value=9.5e-14  Score=127.14  Aligned_cols=131  Identities=21%  Similarity=0.235  Sum_probs=85.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHHcCCHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL-AQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~-~~~~~~lg~~~~~~g~~~~  240 (316)
                      ..|++++|++.++++++.+|+...++..+|.++...|++++|++.++++++    .+|.+ ..++..++.+|...|++++
T Consensus       192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE----QDPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HChhhHHHHHHHHHHHHHHcCCHHH
Confidence            566667777777777666666666666777777777777777777777666    34443 3455666666767777777


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRD  297 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  297 (316)
                      |++.++++++.+|+.... ..+|.++.+.|++++|...++++++.+|++......++
T Consensus       268 A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~  323 (389)
T PRK11788        268 GLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD  323 (389)
T ss_pred             HHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            777777776666655433 66666677777777777777777766666654443333

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.60  E-value=1e-14  Score=127.73  Aligned_cols=147  Identities=18%  Similarity=0.165  Sum_probs=121.5

Q ss_pred             HHhhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175          161 LVRRELDLSAKELQEQVRSG--DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~  238 (316)
                      ...++++++...++++....  +.++..+..+|.++.+.|++++|++.|+++++    .+|++..+...++.++...|++
T Consensus       121 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~P~~~~~~~~l~~~li~~~~~  196 (280)
T PF13429_consen  121 YRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE----LDPDDPDARNALAWLLIDMGDY  196 (280)
T ss_dssp             HHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH----H-TT-HHHHHHHHHHHCTTCHH
T ss_pred             HHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHCCCh
Confidence            37889999999999977655  67889999999999999999999999999999    6999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCCC
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVPV  311 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~~  311 (316)
                      +++.+.++...+..|+++..+..+|.++..+|++++|+.+|+++++.+|+++.....++.++...|+.++|..
T Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~  269 (280)
T PF13429_consen  197 DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR  269 (280)
T ss_dssp             HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999988899999999999999999999999999999999999999999999999999999988743

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.59  E-value=1.6e-13  Score=137.54  Aligned_cols=144  Identities=20%  Similarity=0.224  Sum_probs=88.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++++|+..++++++.+|.+...+..++..+...|++++|++.++++++    ..|.+...+..+|.++...|++++|
T Consensus       545 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A  620 (899)
T TIGR02917       545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD----AAPDSPEAWLMLGRAQLAAGDLNKA  620 (899)
T ss_pred             HcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            344555555555555555555555555555555555555555555555555    3555566666666666666666666


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++.|+++++.+|+++.++..+|.++...|++++|...|+++++.+|++..++..++.++...|++++|
T Consensus       621 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  688 (899)
T TIGR02917       621 VSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESA  688 (899)
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666665443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.59  E-value=5.3e-14  Score=127.51  Aligned_cols=199  Identities=16%  Similarity=0.138  Sum_probs=148.9

Q ss_pred             hhHHHHHHHH-hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH----H--------------------
Q 021175          105 SSSWLISARV-ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIR----Q--------------------  159 (316)
Q Consensus       105 ~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------------------  159 (316)
                      .-+|.-...+ ....++..+....+.+..++|.....-..+.+++++.+.-...-    .                    
T Consensus       319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~  398 (579)
T KOG1125|consen  319 AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDF  398 (579)
T ss_pred             HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccc
Confidence            4456665555 34445556666667666677766544333334443322211100    0                    


Q ss_pred             -----HHHhhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 021175          160 -----VLVRRELDLSAKELQEQVRSGD--ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY  232 (316)
Q Consensus       160 -----~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~  232 (316)
                           .........-.+.|-++....|  .++++...||.+|...|+|++|+++|+.|+.    .+|++...|+.||.++
T Consensus       399 ~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~----v~Pnd~~lWNRLGAtL  474 (579)
T KOG1125|consen  399 ENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ----VKPNDYLLWNRLGATL  474 (579)
T ss_pred             cCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh----cCCchHHHHHHhhHHh
Confidence                 0111123344566666767777  6899999999999999999999999999999    7999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------hhHHHHHHHHHhh
Q 021175          233 VREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN----------KVARPRRDALKDR  302 (316)
Q Consensus       233 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------~~a~~~l~~l~~~  302 (316)
                      ..-.+.++|+..|++|+++.|++..+++|+|.++..+|.|++|.++|-+++.+.+..          ..+|..|......
T Consensus       475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~  554 (579)
T KOG1125|consen  475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSA  554 (579)
T ss_pred             cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999997751          2467777666666


Q ss_pred             CCCCC
Q 021175          303 VPLYK  307 (316)
Q Consensus       303 ~~~~~  307 (316)
                      .++.+
T Consensus       555 ~~~~D  559 (579)
T KOG1125|consen  555 MNRSD  559 (579)
T ss_pred             cCCch
Confidence            66554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=1.8e-14  Score=128.09  Aligned_cols=156  Identities=18%  Similarity=0.178  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHH
Q 021175          146 LGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVY  225 (316)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~  225 (316)
                      .++...|.+++     ..|+.-.|.+.++++++.+|.....|..+|.+|....+.++-.+.|.+|.+    ++|.++.+|
T Consensus       327 ~al~~~gtF~f-----L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~----ldp~n~dvY  397 (606)
T KOG0547|consen  327 EALLLRGTFHF-----LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED----LDPENPDVY  397 (606)
T ss_pred             HHHHHhhhhhh-----hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh----cCCCCCchh
Confidence            34445555554     677888888888888888887777788888888888888888888888888    688888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          226 NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       226 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      +..|.+++-.+++++|+..|+++++++|++.-++..++.+.++++++++++..|+++.+.-|+.++.+...+++....++
T Consensus       398 yHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq  477 (606)
T KOG0547|consen  398 YHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ  477 (606)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888777777


Q ss_pred             CCCCC
Q 021175          306 YKGVP  310 (316)
Q Consensus       306 ~~~A~  310 (316)
                      +++|.
T Consensus       478 Fd~A~  482 (606)
T KOG0547|consen  478 FDKAV  482 (606)
T ss_pred             HHHHH
Confidence            76553

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.57  E-value=1.9e-13  Score=131.82  Aligned_cols=129  Identities=10%  Similarity=0.023  Sum_probs=114.5

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      ....|.+++|...++.+++..|++..++.+++.++.+.+++++|...++++++    .+|+++.+++.+|.++.+.|+++
T Consensus        96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~~~~~~~~a~~l~~~g~~~  171 (694)
T PRK15179         96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSSAREILLEAKSWDEIGQSE  171 (694)
T ss_pred             HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHHHhcchH
Confidence            33888999999999999999999999999999999999999999999999999    68999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  292 (316)
                      +|++.|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...
T Consensus       172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            99999999999888899999999999999999999999999999876654444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.56  E-value=7.5e-14  Score=117.73  Aligned_cols=114  Identities=21%  Similarity=0.295  Sum_probs=107.5

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 021175          156 VIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE  235 (316)
Q Consensus       156 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~  235 (316)
                      .+...+..++|++|+..|.++++++|+++..|.+.+.+|.+.|+++.|++-.+.++.    ++|.+..+|..||.+|..+
T Consensus        87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~----iDp~yskay~RLG~A~~~~  162 (304)
T KOG0553|consen   87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS----IDPHYSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh----cChHHHHHHHHHHHHHHcc
Confidence            345566999999999999999999999999999999999999999999999999999    7999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 021175          236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLK  273 (316)
Q Consensus       236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  273 (316)
                      |++++|++.|++|++++|++...+.+|..+-.++++..
T Consensus       163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999998888777655

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.56  E-value=2.3e-13  Score=112.54  Aligned_cols=109  Identities=14%  Similarity=0.151  Sum_probs=103.5

Q ss_pred             cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCC--HH
Q 021175          197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY-EKKKD--LK  273 (316)
Q Consensus       197 ~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~  273 (316)
                      .++.++++..++++++    .+|++...|..+|.+|...|++++|++.|+++++++|+++.++.++|.++ ...|+  ++
T Consensus        52 ~~~~~~~i~~l~~~L~----~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~  127 (198)
T PRK10370         52 QQTPEAQLQALQDKIR----ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP  127 (198)
T ss_pred             chhHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence            6778999999999999    69999999999999999999999999999999999999999999999975 67787  59


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          274 SALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       274 ~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +|...++++++.+|++..++..++..+...|++++|
T Consensus       128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~A  163 (198)
T PRK10370        128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQA  163 (198)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999866

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.5e-13  Score=122.20  Aligned_cols=156  Identities=14%  Similarity=0.252  Sum_probs=136.6

Q ss_pred             ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 021175          117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLR  196 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  196 (316)
                      -++...+...+..+..+.+.....       ++.++..|.     +..+-++-.+.|.++.+++|+++++|+..|.+++-
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~~~~l-------yI~~a~~y~-----d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl  406 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPAFNSL-------YIKRAAAYA-----DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL  406 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcccchH-------HHHHHHHHh-----hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH
Confidence            345555555665555555444322       333444444     88889999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 021175          197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL  276 (316)
Q Consensus       197 ~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  276 (316)
                      .+++++|+.-|++++.    ++|++..++..++.+.++++++++++..|+++.+..|+.++++...|+++-.++++++|.
T Consensus       407 L~q~e~A~aDF~Kai~----L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~  482 (606)
T KOG0547|consen  407 LQQYEEAIADFQKAIS----LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV  482 (606)
T ss_pred             HHHHHHHHHHHHHHhh----cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH
Confidence            9999999999999999    799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC
Q 021175          277 KAFEEVLLFDPN  288 (316)
Q Consensus       277 ~~~~~al~~~p~  288 (316)
                      +.|.+++++.|.
T Consensus       483 k~YD~ai~LE~~  494 (606)
T KOG0547|consen  483 KQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHhhccc
Confidence            999999999998

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.55  E-value=2.6e-13  Score=112.47  Aligned_cols=146  Identities=18%  Similarity=0.172  Sum_probs=137.1

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|+-+.......+....+|.+...+..+|......|+|.+|+..++++..    ..|++.++|+.+|.+|.+.|++++
T Consensus        77 ~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d~~~~~~lgaaldq~Gr~~~  152 (257)
T COG5010          77 YLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTDWEAWNLLGAALDQLGRFDE  152 (257)
T ss_pred             HhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCChhhhhHHHHHHHHccChhH
Confidence            3678888888888888889999999998999999999999999999999999    799999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP  310 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~  310 (316)
                      |...|.+++++.|+++.+..|+|..|.-.||++.|...+.++...-+.+..+..+++.+....|+++.|+
T Consensus       153 Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~  222 (257)
T COG5010         153 ARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE  222 (257)
T ss_pred             HHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence            9999999999999999999999999999999999999999998888889999999999999999998774

>PLN02789 farnesyltranstransferase

Probab=99.54  E-value=2.2e-12  Score=114.04  Aligned_cols=170  Identities=9%  Similarity=-0.023  Sum_probs=134.2

Q ss_pred             ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRR-ELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      .+..+.|..++..+..+.|....       ++...+....     ..+ ++++++..+.++++.+|++..+|+..+.+..
T Consensus        50 ~e~serAL~lt~~aI~lnP~~yt-------aW~~R~~iL~-----~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~  117 (320)
T PLN02789         50 DERSPRALDLTADVIRLNPGNYT-------VWHFRRLCLE-----ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE  117 (320)
T ss_pred             CCCCHHHHHHHHHHHHHCchhHH-------HHHHHHHHHH-----HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence            33455666666655555555543       2222232222     334 5788999999999999999999999998888


Q ss_pred             HcCCh--HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---C
Q 021175          196 RRKFY--PAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK---K  270 (316)
Q Consensus       196 ~~g~~--~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g  270 (316)
                      ..|+.  ++++++++++++    .+|.+..+|.+.|.++...|++++|++.++++++.+|++..+|+..+.+....   |
T Consensus       118 ~l~~~~~~~el~~~~kal~----~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~  193 (320)
T PLN02789        118 KLGPDAANKELEFTRKILS----LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG  193 (320)
T ss_pred             HcCchhhHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc
Confidence            88874  678889999998    69999999999999999999999999999999999999999999999888766   3


Q ss_pred             CH----HHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          271 DL----KSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       271 ~~----~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      ++    ++++.+..++++++|++..+|..++.++..
T Consensus       194 ~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        194 GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD  229 (320)
T ss_pred             cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence            33    468888889999999999999988888876

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.52  E-value=2.7e-13  Score=122.24  Aligned_cols=112  Identities=17%  Similarity=0.250  Sum_probs=69.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175          188 FELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE  267 (316)
Q Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  267 (316)
                      ...|..++..|+|++|+++|+++++    .+|+++.+++++|.++..+|++++|+..++++++++|+++.+++++|.++.
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~----~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~   81 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAID----LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM   81 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            3445555666666666666666666    466666666666666666666666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175          268 KKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV  303 (316)
Q Consensus       268 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~  303 (316)
                      .+|++++|+..|+++++++|+++.+...++.+..++
T Consensus        82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            666666666666666666666666666665554444

>PLN02789 farnesyltranstransferase

Probab=99.52  E-value=1.2e-12  Score=115.69  Aligned_cols=139  Identities=13%  Similarity=0.070  Sum_probs=131.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH--
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK-FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL--  238 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~--  238 (316)
                      ..+..++|+..+.++++.+|++..+|...|.++...| +++++++.++++++    .+|++..+|++.+.++...|+.  
T Consensus        49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~----~npknyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE----DNPKNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH----HCCcchHHhHHHHHHHHHcCchhh
Confidence            5678899999999999999999999999999999998 68999999999999    6999999999999999999874  


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      ++++++++++++.+|++..+|...|.++...|++++|++++.++++.+|++..+|...+.+....+
T Consensus       125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~  190 (320)
T PLN02789        125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSP  190 (320)
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcc
Confidence            788999999999999999999999999999999999999999999999999999999999887663

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=1.7e-13  Score=116.56  Aligned_cols=145  Identities=13%  Similarity=0.131  Sum_probs=134.1

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...+++++|.+.|+.+++.+|.+.++...+|.-|+..++.+-|..+|++.++    +.-.+++.+.|+|.|++..+++|-
T Consensus       301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq----mG~~speLf~NigLCC~yaqQ~D~  376 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ----MGAQSPELFCNIGLCCLYAQQIDL  376 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH----hcCCChHHHhhHHHHHHhhcchhh
Confidence            3788899999999999999999999988899999999999999999999999    788999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          241 GISQFETAVKLQPG---YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       241 A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++..|++|+....+   -+++|+|+|.+....||+.-|..+|+-++..+|++.+++.+++.+..+.|+.++|
T Consensus       377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A  448 (478)
T KOG1129|consen  377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA  448 (478)
T ss_pred             hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence            99999999987543   3789999999999999999999999999999999999999999999999998765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.51  E-value=7e-13  Score=127.94  Aligned_cols=142  Identities=9%  Similarity=-0.038  Sum_probs=133.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Q 021175          165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQ  244 (316)
Q Consensus       165 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  244 (316)
                      ...+++..........|++++++.+||.+....|++++|+.+++.+++    ..|++..++.+++.++.+++++++|...
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~  142 (694)
T PRK15179         67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAE  142 (694)
T ss_pred             chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHH
Confidence            344555666666778899999999999999999999999999999999    7999999999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175          245 FETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP  310 (316)
Q Consensus       245 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~  310 (316)
                      ++++++.+|+++.+++.+|.++.+.|++++|...|++++..+|+++.++..++.+....|+.++|.
T Consensus       143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~  208 (694)
T PRK15179        143 IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR  208 (694)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999987663

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.51  E-value=7.7e-13  Score=130.99  Aligned_cols=142  Identities=11%  Similarity=0.047  Sum_probs=130.1

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|+.++|++.+.++...+|..+.++..+|.++...|++++|++.++++++    .+|.++.++..+|.++...|++++|
T Consensus        27 ~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~l~~~g~~~eA  102 (765)
T PRK10049         27 WAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS----LEPQNDDYQRGLILTLADAGQYDEA  102 (765)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            688999999999999888898999999999999999999999999999999    6899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~  308 (316)
                      ++.++++++.+|+++. +..+|.++...|++++|+..++++++.+|+++.++..++.++...+..++
T Consensus       103 ~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~  168 (765)
T PRK10049        103 LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP  168 (765)
T ss_pred             HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence            9999999999999999 99999999999999999999999999999999999999888887776653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=4.8e-13  Score=120.96  Aligned_cols=174  Identities=17%  Similarity=0.214  Sum_probs=129.2

Q ss_pred             hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 021175          120 NVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKF  199 (316)
Q Consensus       120 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  199 (316)
                      ...|+..+..+..+++.-.       -+|++.|..|.     -.++.++|+..|..|-+.-|........+|.-|...++
T Consensus       328 ~seARry~SKat~lD~~fg-------paWl~fghsfa-----~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n  395 (611)
T KOG1173|consen  328 YSEARRYFSKATTLDPTFG-------PAWLAFGHSFA-----GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN  395 (611)
T ss_pred             cHHHHHHHHHHhhcCcccc-------HHHHHHhHHhh-----hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc
Confidence            3344444444444443333       34444444444     55666666666666666666665556666666666666


Q ss_pred             hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---cHHHHHHHHHHHHHcCCH
Q 021175          200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP----G---YVTAWNNLGDAYEKKKDL  272 (316)
Q Consensus       200 ~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~---~~~~~~~lg~~~~~~g~~  272 (316)
                      ++.|.++|.+|+.    +.|.++-.+..+|.+.+..+.|.+|..+|+.++..-+    .   ....+.|||-++.+++++
T Consensus       396 ~kLAe~Ff~~A~a----i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~  471 (611)
T KOG1173|consen  396 LKLAEKFFKQALA----IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY  471 (611)
T ss_pred             HHHHHHHHHHHHh----cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence            6666666666666    6888899999999999999999999999999884321    1   245689999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          273 KSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       273 ~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++|+.+|++++.+.|.++..+..+|-++..+|+.++|
T Consensus       472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~A  508 (611)
T KOG1173|consen  472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKA  508 (611)
T ss_pred             HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHH
Confidence            9999999999999999999999999999999999876

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2.4e-12  Score=115.94  Aligned_cols=138  Identities=24%  Similarity=0.368  Sum_probs=125.3

Q ss_pred             HhhhHHHHHHHHHHHHH--------------------------cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 021175          162 VRRELDLSAKELQEQVR--------------------------SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD  215 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  215 (316)
                      ..++++.++.+|++++.                          .+|+.+..-...|+.++..|+|..|+.+|.++++   
T Consensus       310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk---  386 (539)
T KOG0548|consen  310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK---  386 (539)
T ss_pred             hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---
Confidence            66788888888877765                          3444456667789999999999999999999999   


Q ss_pred             CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 021175          216 GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR  295 (316)
Q Consensus       216 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  295 (316)
                       .+|+++..|.|.|.||.+.|++..|++..+++++++|+...+|..-|.++..+.+|++|++.|+++++.+|++.++...
T Consensus       387 -r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~  465 (539)
T KOG0548|consen  387 -RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDG  465 (539)
T ss_pred             -cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence             6999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHhhC
Q 021175          296 RDALKDRV  303 (316)
Q Consensus       296 l~~l~~~~  303 (316)
                      +..+...+
T Consensus       466 ~~rc~~a~  473 (539)
T KOG0548|consen  466 YRRCVEAQ  473 (539)
T ss_pred             HHHHHHHh
Confidence            88887764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.49  E-value=2.2e-12  Score=127.72  Aligned_cols=151  Identities=12%  Similarity=0.058  Sum_probs=128.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---------CCcc--HHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---------DDQD--LAQV  224 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------~~p~--~~~~  224 (316)
                      ++..|++++|++.|+++++.+|..    ......++.++...|++++|+++++++.+..|.         ..|+  ...+
T Consensus       282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a  361 (765)
T PRK10049        282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG  361 (765)
T ss_pred             HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence            348899999999999999888765    456778888889999999999999999884221         1123  3567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      +..+|.++...|++++|++.+++++...|++..++..+|.++...|++++|++.++++++++|++...+..++.+....|
T Consensus       362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~  441 (765)
T PRK10049        362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ  441 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 021175          305 LYKGVP  310 (316)
Q Consensus       305 ~~~~A~  310 (316)
                      ++++|.
T Consensus       442 ~~~~A~  447 (765)
T PRK10049        442 EWRQMD  447 (765)
T ss_pred             CHHHHH
Confidence            887653

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.48  E-value=1.2e-12  Score=108.51  Aligned_cols=143  Identities=18%  Similarity=0.191  Sum_probs=131.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHH
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI  242 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~  242 (316)
                      ..+...+...+-+....+|++..+ .+++..+...|+-+++..+..++..    .+|.+......+|....+.|++.+|+
T Consensus        46 ~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~----~~~~d~~ll~~~gk~~~~~g~~~~A~  120 (257)
T COG5010          46 MRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAI----AYPKDRELLAAQGKNQIRNGNFGEAV  120 (257)
T ss_pred             HHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhc----cCcccHHHHHHHHHHHHHhcchHHHH
Confidence            334445777777788899999999 9999999999999999999999777    58899899888999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175          243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP  310 (316)
Q Consensus       243 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~  310 (316)
                      ..++++.+++|+++++|..+|.+|.+.|++++|...|.+++++.|+++.+..|++..+...|++++|+
T Consensus       121 ~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~  188 (257)
T COG5010         121 SVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE  188 (257)
T ss_pred             HHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988763

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.47  E-value=4.1e-12  Score=108.23  Aligned_cols=158  Identities=15%  Similarity=0.061  Sum_probs=122.3

Q ss_pred             ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHH---HHHHHHHH
Q 021175          117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASAT---EYFELGAV  193 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~  193 (316)
                      -++...|...++.+....+..+...    .++...|..+.     ..|++++|+..++++++.+|+++.   +++.+|.+
T Consensus        46 ~~~~~~A~~~~~~~~~~~p~~~~~~----~a~~~la~~~~-----~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~  116 (235)
T TIGR03302        46 SGDYTEAIKYFEALESRYPFSPYAE----QAQLDLAYAYY-----KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLS  116 (235)
T ss_pred             cCCHHHHHHHHHHHHHhCCCchhHH----HHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHH
Confidence            4455555556665544444332111    23333444444     899999999999999999998765   79999999


Q ss_pred             HHHc--------CChHHHHHHHHHHHHhcCCCCccHHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHH
Q 021175          194 MLRR--------KFYPAATKYLLQAIEKWDGDDQDLAQV-----------------YNALGVSYVREGKLDKGISQFETA  248 (316)
Q Consensus       194 ~~~~--------g~~~~A~~~~~~al~~~~~~~p~~~~~-----------------~~~lg~~~~~~g~~~~A~~~~~~a  248 (316)
                      +...        |++++|++.++++++.    +|++..+                 ...+|..|+..|++++|+..++++
T Consensus       117 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a  192 (235)
T TIGR03302       117 NYNQIDRVDRDQTAAREAFEAFQELIRR----YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV  192 (235)
T ss_pred             HHHhcccccCCHHHHHHHHHHHHHHHHH----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            9876        8899999999999994    5554322                 246789999999999999999999


Q ss_pred             HHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175          249 VKLQPGY---VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP  287 (316)
Q Consensus       249 l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  287 (316)
                      ++..|+.   +++++.+|.++..+|++++|..+++......|
T Consensus       193 l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       193 VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            9997764   68999999999999999999999888766554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.47  E-value=3.6e-12  Score=99.05  Aligned_cols=89  Identities=18%  Similarity=0.129  Sum_probs=86.2

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      ....|++++|++.|+-....+|.+.+.|++||.++..+|+|++|++.|.+++.    ++|+++.++.++|.+++..|+.+
T Consensus        45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~----L~~ddp~~~~~ag~c~L~lG~~~  120 (157)
T PRK15363         45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ----IKIDAPQAPWAAAECYLACDNVC  120 (157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHcCCHH
Confidence            34899999999999999999999999999999999999999999999999999    79999999999999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 021175          240 KGISQFETAVKLQ  252 (316)
Q Consensus       240 ~A~~~~~~al~~~  252 (316)
                      +|.+.|+.++...
T Consensus       121 ~A~~aF~~Ai~~~  133 (157)
T PRK15363        121 YAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999876

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1.8e-11  Score=103.98  Aligned_cols=138  Identities=17%  Similarity=0.138  Sum_probs=123.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc---CCHH
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE---GKLD  239 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~---g~~~  239 (316)
                      ..+.++.+..++..+..+|++++.|..||.+|+..|+++.|...|.+|++    +.|++++.+..+|.+++.+   ....
T Consensus       135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r----L~g~n~~~~~g~aeaL~~~a~~~~ta  210 (287)
T COG4235         135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR----LAGDNPEILLGLAEALYYQAGQQMTA  210 (287)
T ss_pred             cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcCCcccH
Confidence            44567778888999999999999999999999999999999999999999    7999999999999998775   3567


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      ++.+.++++++.+|++..+.+.||..++..|++.+|...++..++..|.+..-...+........
T Consensus       211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~  275 (287)
T COG4235         211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARAL  275 (287)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987766666655444433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.44  E-value=1.1e-12  Score=114.95  Aligned_cols=121  Identities=17%  Similarity=0.240  Sum_probs=93.6

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|+.++|++.++++++.+|+++++...++.++...|+++++.+.++...+    ..|.++..+..+|.++...|++++
T Consensus       157 ~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~----~~~~~~~~~~~la~~~~~lg~~~~  232 (280)
T PF13429_consen  157 EQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK----AAPDDPDLWDALAAAYLQLGRYEE  232 (280)
T ss_dssp             HHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH----H-HTSCCHCHHHHHHHHHHT-HHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH----HCcCHHHHHHHHHHHhcccccccc
Confidence            3899999999999999999999999999999999999999999999999888    357788889999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      |+.+|+++++.+|+++.....+|.++...|+.++|...++++++.
T Consensus       233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  233 ALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999998763

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.44  E-value=3.6e-12  Score=96.29  Aligned_cols=112  Identities=20%  Similarity=0.276  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAWN  260 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  260 (316)
                      ++.++.+|..+...|++++|++.++++++..+ .++..+.+++.+|.++...|++++|++.|++++..+|++   +.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            46789999999999999999999999998532 123346789999999999999999999999999998885   67899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 021175          261 NLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRR  296 (316)
Q Consensus       261 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  296 (316)
                      .+|.++.+.|++++|...++++++..|++..+....
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            999999999999999999999999999988765543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.44  E-value=2.7e-12  Score=115.74  Aligned_cols=108  Identities=18%  Similarity=0.227  Sum_probs=102.6

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK  237 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~  237 (316)
                      +..+..|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++    ++|.++.+++++|.++..+|+
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~----l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE----LDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHhCC
Confidence            4455899999999999999999999999999999999999999999999999999    799999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 021175          238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKK  269 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  269 (316)
                      +++|+..|+++++++|++..+...++.|...+
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998887665

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.43  E-value=1.6e-11  Score=113.49  Aligned_cols=191  Identities=13%  Similarity=0.134  Sum_probs=144.8

Q ss_pred             hhccchHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc--------CCCCHH
Q 021175          115 ANASENVQMDAVYEIGELF-ELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRS--------GDASAT  185 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~  185 (316)
                      ...++.+.|..++..+... ..............+..++.++.     ..+++++|+..|++++.+        +|..+.
T Consensus       210 ~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-----~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~  284 (508)
T KOG1840|consen  210 AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-----SLGKYDEAVNLYEEALTIREEVFGEDHPAVAA  284 (508)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-----HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            3455666666666533333 11111122222122223455554     899999999999999974        445577


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDG----DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--------P  253 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p  253 (316)
                      ++.+||.+|...|++++|..++++|+++..+    ..|.-+..+.+++.++..++++++|+.++++++++.        |
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~  364 (508)
T KOG1840|consen  285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV  364 (508)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence            9999999999999999999999999997653    456677888999999999999999999999999863        2


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHhhCCCCCCCC
Q 021175          254 GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD--------PNNKVARPRRDALKDRVPLYKGVP  310 (316)
Q Consensus       254 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~l~~l~~~~~~~~~A~  310 (316)
                      .-+..+.++|.+|..+|++++|.+.|++++++.        +.......+++..+.+.+.+.+|+
T Consensus       365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~  429 (508)
T KOG1840|consen  365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE  429 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence            347789999999999999999999999999874        333556778888888888877653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.42  E-value=1.4e-11  Score=117.68  Aligned_cols=177  Identities=19%  Similarity=0.199  Sum_probs=146.4

Q ss_pred             cchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 021175          118 SENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRR  197 (316)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  197 (316)
                      +..+.|...|+.+..++|...       .++.+++.+-.  +......+..+...+.++...+|++|.+...+++-++-.
T Consensus       213 ~~~~~a~~a~~ralqLdp~~v-------~alv~L~~~~l--~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK  283 (1018)
T KOG2002|consen  213 GMSEKALLAFERALQLDPTCV-------SALVALGEVDL--NFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFK  283 (1018)
T ss_pred             cchhhHHHHHHHHHhcChhhH-------HHHHHHHHHHH--HccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhc
Confidence            344455556665555555222       23333333322  122556788999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHH
Q 021175          198 KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY-VTAWNNLGDAYEKKKDLKSAL  276 (316)
Q Consensus       198 g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~  276 (316)
                      |+|..+......++.... ..+-.++.++++|.+|..+|+|++|..+|.++++.+|++ .-.++.+|++|...|+++.|.
T Consensus       284 ~dy~~v~~la~~ai~~t~-~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~  362 (1018)
T KOG2002|consen  284 KDYERVWHLAEHAIKNTE-NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESK  362 (1018)
T ss_pred             ccHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHH
Confidence            999999999999998532 245667889999999999999999999999999999988 888999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          277 KAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       277 ~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      .+|+++++..|++.+....+|.++...+
T Consensus       363 ~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  363 FCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             HHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            9999999999999999999999998775

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.41  E-value=1.2e-11  Score=95.99  Aligned_cols=94  Identities=15%  Similarity=0.069  Sum_probs=90.2

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++++|+..+++++..+|+++.++.++|.++...|++++|+..++++++    .+|.++..++++|.++...|++++|
T Consensus        29 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~la~~~~~~g~~~~A  104 (135)
T TIGR02552        29 QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA----LDPDDPRPYFHAAECLLALGEPESA  104 (135)
T ss_pred             HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCChHHHHHHHHHHHHcCCHHHH
Confidence            889999999999999999999999999999999999999999999999999    7999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHH
Q 021175          242 ISQFETAVKLQPGYVTAW  259 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~  259 (316)
                      ++.++++++.+|++....
T Consensus       105 ~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552       105 LKALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHHHHHhccccchHH
Confidence            999999999999886643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.41  E-value=2.6e-11  Score=109.69  Aligned_cols=106  Identities=17%  Similarity=0.119  Sum_probs=61.9

Q ss_pred             HcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-
Q 021175          178 RSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV-  256 (316)
Q Consensus       178 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-  256 (316)
                      ..+|........+|.++...|++++|++.++++++    ..|+++.++..+|.++...|++++|++.++++++..|.++ 
T Consensus       108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~  183 (355)
T cd05804         108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE----LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM  183 (355)
T ss_pred             cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc
Confidence            34444555555566666666666666666666666    4555566666666666666666666666666666554321 


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175          257 ---TAWNNLGDAYEKKKDLKSALKAFEEVLLFDP  287 (316)
Q Consensus       257 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  287 (316)
                         ..+..+|.++...|++++|...|++++...|
T Consensus       184 ~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         184 LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence               2344566666666666666666666655444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.41  E-value=1.5e-12  Score=110.81  Aligned_cols=140  Identities=14%  Similarity=0.134  Sum_probs=129.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..++.+.|+.+|++.++..-.+++.+.|+|.+++..+++|-++..|++|+....+ +...+++|+|+|.+....||+.-|
T Consensus       336 Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-~~~aaDvWYNlg~vaV~iGD~nlA  414 (478)
T KOG1129|consen  336 YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-PGQAADVWYNLGFVAVTIGDFNLA  414 (478)
T ss_pred             cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-cchhhhhhhccceeEEeccchHHH
Confidence            5789999999999999999999999999999999999999999999999986442 345688999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      ..+|+-++..||++.++++|||..-.+.|+.++|...++.+....|+-.+...+++.+...
T Consensus       415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~  475 (478)
T KOG1129|consen  415 KRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMSVH  475 (478)
T ss_pred             HHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEeee
Confidence            9999999999999999999999999999999999999999999999998888887655443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.40  E-value=1.4e-11  Score=113.89  Aligned_cols=190  Identities=19%  Similarity=0.231  Sum_probs=151.5

Q ss_pred             hhccchHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcC--------CCCHH
Q 021175          115 ANASENVQMDAVYEIGELFELG-IQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSG--------DASAT  185 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~  185 (316)
                      ...+...+|..+|+.+..+... ....+......+..++..|.     ..|++++|..++++++++.        |+-+.
T Consensus       252 ~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-----~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  252 RSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-----KQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-----ccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            3456677777788655444433 22334444566677777775     8999999999999998753        33466


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDG----DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--------P  253 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p  253 (316)
                      .+.+++.++..++++++|+.++++++++...    .++..+..+.++|.+|..+|++++|.+.+++|+++.        +
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~  406 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY  406 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence            7889999999999999999999999997542    455678899999999999999999999999999875        3


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCChhHHHHHHHHHhhCCCCCCC
Q 021175          254 GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF-------DPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       254 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      .......++|..|.+.+++++|...|.++..+       .|+....+.+|+.+|..+|++++|
T Consensus       407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a  469 (508)
T KOG1840|consen  407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAA  469 (508)
T ss_pred             hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHH
Confidence            33678889999999999999999999888876       345567789999999999999876

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.40  E-value=1.7e-11  Score=98.96  Aligned_cols=126  Identities=17%  Similarity=0.221  Sum_probs=101.1

Q ss_pred             hhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          164 RELDLSAKELQEQVRSGDAS--ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       164 ~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      .++..+...+.+.++.++..  ..+++++|.++...|++++|+..|+++++..+. .+..+.++.++|.++...|++++|
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA   91 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKA   91 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHH
Confidence            34555556665555555544  678899999999999999999999999984221 223567999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhcCCCCh
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYE-------KKKDLK-------SALKAFEEVLLFDPNNK  290 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~  290 (316)
                      ++.++++++++|.....+.++|.++.       .+|+++       +|..+|++++..+|++.
T Consensus        92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999999988       777766       66677777888888654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.40  E-value=1.4e-11  Score=99.89  Aligned_cols=108  Identities=22%  Similarity=0.385  Sum_probs=95.4

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 021175          181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWN  260 (316)
Q Consensus       181 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  260 (316)
                      +..+.+++++|..+...|++++|+.+|+++++..+. .+....++.++|.++...|++++|++.++++++.+|++...+.
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            356778999999999999999999999999984221 2234678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCC
Q 021175          261 NLGDAYEKKKD--------------LKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       261 ~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~  289 (316)
                      .+|.++...|+              +++|.++++++++.+|++
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999887              678999999999999986

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.39  E-value=1.6e-10  Score=98.42  Aligned_cols=152  Identities=16%  Similarity=0.124  Sum_probs=120.0

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHc
Q 021175          157 IRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-DDQDLAQVYNALGVSYVRE  235 (316)
Q Consensus       157 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~p~~~~~~~~lg~~~~~~  235 (316)
                      ++.++..|-++.|++.|....+...-...+...+-.+|....+|++|++..++..+.-++ ..-..+..|..++..+...
T Consensus       114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~  193 (389)
T COG2956         114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS  193 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence            444558888888888888877766666778888888888888888888888888874322 2224567788888888888


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHhhCCCCCC
Q 021175          236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN-KVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~~l~~~~~~~~~  308 (316)
                      .+.+.|...+++|++.+|++..+-..+|.++...|++++|++.++.+++.||+. +++...|..+|..+|+.++
T Consensus       194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         194 SDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence            888888888888888888888888888888888888888888888888888875 5667777788888877643

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.38  E-value=2.4e-12  Score=87.76  Aligned_cols=67  Identities=37%  Similarity=0.642  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 021175          221 LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK-DLKSALKAFEEVLLFDP  287 (316)
Q Consensus       221 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p  287 (316)
                      ++..|.++|.+++..|++++|+..|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            35667777777777777777777777777777777777777777777777 57777777777777776

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.37  E-value=1.4e-11  Score=87.97  Aligned_cols=99  Identities=34%  Similarity=0.561  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDA  265 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  265 (316)
                      +++++|..+...|++++|++.++++++    ..|.+..++..+|.++...|++++|++.++++++..|.+...+..+|.+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALE----LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA   77 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence            578899999999999999999999999    6888888999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC
Q 021175          266 YEKKKDLKSALKAFEEVLLFDPN  288 (316)
Q Consensus       266 ~~~~g~~~~A~~~~~~al~~~p~  288 (316)
                      +...|++++|...++++++.+|+
T Consensus        78 ~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          78 YYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHhHHHHHHHHHHHHccCCC
Confidence            99999999999999999988874

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.35  E-value=8.6e-11  Score=105.23  Aligned_cols=140  Identities=18%  Similarity=0.133  Sum_probs=102.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      .+..|++++|.+.++..++..|+++..+...+.++...++.++|.+.+++++.    .+|+.+....++|.++.+.|+++
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~----l~P~~~~l~~~~a~all~~g~~~  391 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA----LDPNSPLLQLNLAQALLKGGKPQ  391 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCccHHHHHHHHHHHhcCChH
Confidence            34667777777777777777777777777777777777777777777777777    57777777777777777777777


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV  303 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~  303 (316)
                      +|+..+++.+..+|+++..|..|+..|..+|+..+|...+.+...+.-+...+...+....++.
T Consensus       392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            7777777777777777777777777777777777777777777766666555555554444443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.35  E-value=8.4e-11  Score=111.71  Aligned_cols=132  Identities=21%  Similarity=0.334  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN  226 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~  226 (316)
                      .+++.++..+     ..|++++|+..+.++++.+|..+.+|+.||.+|..+|+.+++....-.|..    ++|.+.+.|.
T Consensus       141 ~ll~eAN~lf-----arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH----L~p~d~e~W~  211 (895)
T KOG2076|consen  141 QLLGEANNLF-----ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH----LNPKDYELWK  211 (895)
T ss_pred             HHHHHHHHHH-----HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCChHHHH
Confidence            3444444444     779999999999999999999999999999999999999999999999999    7999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175          227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP  287 (316)
Q Consensus       227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  287 (316)
                      .++....++|.+++|.-+|.+|++.+|.+.+..+..+.+|.++|+...|+..|.+.+++.|
T Consensus       212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999999999999999999999999999999999999999

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.34  E-value=1.7e-10  Score=109.61  Aligned_cols=195  Identities=11%  Similarity=0.114  Sum_probs=159.2

Q ss_pred             hhhhHHHHHHHH-hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCC
Q 021175          103 FGSSSWLISARV-ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGD  181 (316)
Q Consensus       103 ~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  181 (316)
                      ....+|.+.+.+ ..-|+.+++...+-.+.++.+...-.+...       +-.     ..+.|++++|.-+|.++++.+|
T Consensus       171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l-------adl-----s~~~~~i~qA~~cy~rAI~~~p  238 (895)
T KOG2076|consen  171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL-------ADL-----SEQLGNINQARYCYSRAIQANP  238 (895)
T ss_pred             cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH-------HHH-----HHhcccHHHHHHHHHHHHhcCC
Confidence            344567777776 566788888888888888888777333222       111     2267889999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC----------------------------------------------
Q 021175          182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD----------------------------------------------  215 (316)
Q Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------------------------------------  215 (316)
                      .+....+..+.+|.+.|+...|.+.|.+.++..|                                              
T Consensus       239 ~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed  318 (895)
T KOG2076|consen  239 SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLED  318 (895)
T ss_pred             cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccH
Confidence            9988889999999999999888888888776221                                              


Q ss_pred             --------------------------------------------------------------------------------
Q 021175          216 --------------------------------------------------------------------------------  215 (316)
Q Consensus       216 --------------------------------------------------------------------------------  215 (316)
                                                                                                      
T Consensus       319 ~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~  398 (895)
T KOG2076|consen  319 LNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEA  398 (895)
T ss_pred             HHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHH
Confidence                                                                                            


Q ss_pred             -------C--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          216 -------G--DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG-YVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       216 -------~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                             .  ...++...++.++.++...|++++|+.++...+...+. +..+|+.+|.||..+|.+++|+++|++++..
T Consensus       399 ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~  478 (895)
T KOG2076|consen  399 LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL  478 (895)
T ss_pred             HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence                   0  12245678889999999999999999999999987764 4789999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHhhCCCCCCC
Q 021175          286 DPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       286 ~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +|++.+++..|+.+++.+|+.++|
T Consensus       479 ~p~~~D~Ri~Lasl~~~~g~~Eka  502 (895)
T KOG2076|consen  479 APDNLDARITLASLYQQLGNHEKA  502 (895)
T ss_pred             CCCchhhhhhHHHHHHhcCCHHHH
Confidence            999999999999999999999866

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=4.2e-10  Score=92.91  Aligned_cols=134  Identities=16%  Similarity=0.125  Sum_probs=70.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++++|+++|+..++.+|.+...+-..-.+...+|+--+|++.+.+-++    ..+.+.++|..++.+|...|+|++|
T Consensus        98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~----~F~~D~EAW~eLaeiY~~~~~f~kA  173 (289)
T KOG3060|consen   98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD----KFMNDQEAWHELAEIYLSEGDFEKA  173 (289)
T ss_pred             HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH----HhcCcHHHHHHHHHHHHhHhHHHHH
Confidence            345555555555555555555555555444444555555555555555555    3455555555555555555555555


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKK---DLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      .-++++.+=++|.++-.+..+|.+++-+|   +.+-|.++|.++++++|.+..+++.+-..
T Consensus       174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence            55555555555555555555555555444   23345555555555555544444444333

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=2e-10  Score=94.76  Aligned_cols=141  Identities=19%  Similarity=0.140  Sum_probs=132.5

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      +..++.+.|..++++.....|+...+-...|..+...|++++|+++|+..++    .+|.+..++-..-.+...+|+.-+
T Consensus        63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~----ddpt~~v~~KRKlAilka~GK~l~  138 (289)
T KOG3060|consen   63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLE----DDPTDTVIRKRKLAILKAQGKNLE  138 (289)
T ss_pred             HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhc----cCcchhHHHHHHHHHHHHcCCcHH
Confidence            4788899999999999998999999999999999999999999999999999    799999999988888999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      |++.+.+-++..++|.++|..++.+|...|++++|.-||++.+-++|.++-...+++.++.-+|.
T Consensus       139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  139 AIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999888766554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.32  E-value=5e-11  Score=111.54  Aligned_cols=126  Identities=24%  Similarity=0.293  Sum_probs=120.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..++.+++..++.++-+.+|..+..|+..|..+..+|++.+|.+.|..|+.    ++|++..+...+|.++.+.|+..-|
T Consensus       662 ~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~hv~s~~Ala~~lle~G~~~la  737 (799)
T KOG4162|consen  662 LSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDHVPSMTALAELLLELGSPRLA  737 (799)
T ss_pred             hcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCCcHHHHHHHHHHHHhCCcchH
Confidence            677888999999999999999999999999999999999999999999999    7999999999999999999999888


Q ss_pred             HH--HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 021175          242 IS--QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV  291 (316)
Q Consensus       242 ~~--~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  291 (316)
                      .+  .+..+++++|.++++|+++|.++.++|+.++|.++|+.++++++.+|-
T Consensus       738 ~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  738 EKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            88  999999999999999999999999999999999999999999988764

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.32  E-value=1.6e-11  Score=117.32  Aligned_cols=154  Identities=16%  Similarity=0.241  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc
Q 021175          147 GLLGVGTFFVIRQ-------VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ  219 (316)
Q Consensus       147 ~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p  219 (316)
                      +++++|+++...-       ....+.+++|++.|.++++.+|.+..+-+.+|.++...|++.+|.+.|.+..+    .-.
T Consensus       602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE----a~~  677 (1018)
T KOG2002|consen  602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE----ATS  677 (1018)
T ss_pred             HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHH----HHh
Confidence            5566677554321       23566789999999999999999999999999999999999999999999998    344


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 021175          220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRD  297 (316)
Q Consensus       220 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  297 (316)
                      +++.+|.|+|.||..+|+|-.|++.|+.+++..  .++..+...||.+++..|++.+|.++..+++...|.++...++++
T Consensus       678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a  757 (1018)
T KOG2002|consen  678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA  757 (1018)
T ss_pred             hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence            678899999999999999999999999999864  356899999999999999999999999999999999999999999


Q ss_pred             HHHhhCC
Q 021175          298 ALKDRVP  304 (316)
Q Consensus       298 ~l~~~~~  304 (316)
                      .+..+++
T Consensus       758 ~v~kkla  764 (1018)
T KOG2002|consen  758 LVLKKLA  764 (1018)
T ss_pred             HHHHHHH
Confidence            8887755

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.31  E-value=1.9e-10  Score=113.20  Aligned_cols=175  Identities=10%  Similarity=-0.031  Sum_probs=142.2

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 021175          115 ANASENVQMDAVYEIGELFELGIQ-LSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAV  193 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  193 (316)
                      ...|+...|.+.++.+....|..+ ... .       +..++.     ..|+.++|+.++++++...|........+|.+
T Consensus        45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-d-------ll~l~~-----~~G~~~~A~~~~eka~~p~n~~~~~llalA~l  111 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-D-------WLQIAG-----WAGRDQEVIDVYERYQSSMNISSRGLASAARA  111 (822)
T ss_pred             HhCCCHHHHHHHHHHHHhhCccchhhHH-H-------HHHHHH-----HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence            567777888888886666666653 111 1       111122     66999999999999995556666677777889


Q ss_pred             HHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 021175          194 MLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLK  273 (316)
Q Consensus       194 ~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  273 (316)
                      +...|++++|++.|+++++    .+|+++.++..++.++...++.++|++.++++...+|.+... ..++.++...++..
T Consensus       112 y~~~gdyd~Aiely~kaL~----~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~  186 (822)
T PRK14574        112 YRNEKRWDQALALWQSSLK----KDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY  186 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH
Confidence            9999999999999999999    699999999999999999999999999999999999986554 55666666678887


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCC
Q 021175          274 SALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK  307 (316)
Q Consensus       274 ~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~  307 (316)
                      +|++.++++++.+|++.+....+..+..+.|-..
T Consensus       187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~  220 (822)
T PRK14574        187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVE  220 (822)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence            8999999999999999999988888877777654

>PRK15331 chaperone protein SicA; Provisional

Probab=99.30  E-value=4.7e-11  Score=93.23  Aligned_cols=123  Identities=10%  Similarity=-0.008  Sum_probs=108.5

Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 021175          177 VRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV  256 (316)
Q Consensus       177 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  256 (316)
                      ..+.++.-+..+..|.-++..|++++|...|+-...    .+|.++..+..||.++..+|+|++|+..|..|..++++++
T Consensus        30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~----~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI----YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            345556677889999999999999999999999998    7999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      ...+..|.||..+|+.++|+.+|+.+++ +|.+......-......+.
T Consensus       106 ~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~  152 (165)
T PRK15331        106 RPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK  152 (165)
T ss_pred             CccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988 6877776665554444443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.30  E-value=4.9e-10  Score=105.03  Aligned_cols=173  Identities=20%  Similarity=0.187  Sum_probs=144.0

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHH
Q 021175          125 AVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAA  203 (316)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A  203 (316)
                      +.++.+..+++..+.       +.+.++..+.     .+++.+.|....+++++.++ +++.+|..++.++...+++.+|
T Consensus       465 qale~av~~d~~dp~-------~if~lalq~A-----~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A  532 (799)
T KOG4162|consen  465 QALEEAVQFDPTDPL-------VIFYLALQYA-----EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA  532 (799)
T ss_pred             HHHHHHHhcCCCCch-------HHHHHHHHHH-----HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence            355666666666652       3333333343     78899999999999999954 6789999999999999999999


Q ss_pred             HHHHHHHHHhcC--------------------------------------------------------------------
Q 021175          204 TKYLLQAIEKWD--------------------------------------------------------------------  215 (316)
Q Consensus       204 ~~~~~~al~~~~--------------------------------------------------------------------  215 (316)
                      +...+.+++-++                                                                    
T Consensus       533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~  612 (799)
T KOG4162|consen  533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST  612 (799)
T ss_pred             HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence            888877765110                                                                    


Q ss_pred             -----------------------------------------------------------------CCCccHHHHHHHHHH
Q 021175          216 -----------------------------------------------------------------GDDQDLAQVYNALGV  230 (316)
Q Consensus       216 -----------------------------------------------------------------~~~p~~~~~~~~lg~  230 (316)
                                                                                       ++.|..+..|+..|.
T Consensus       613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~  692 (799)
T KOG4162|consen  613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGL  692 (799)
T ss_pred             hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhH
Confidence                                                                             145556677888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCChhHHHHHHHHHhhCCCCCC
Q 021175          231 SYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALK--AFEEVLLFDPNNKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       231 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~  308 (316)
                      ++..+|+..+|.+.|..|+.++|+++.+...+|.++.+.|+..-|..  .+..+++++|.++++|+.+|.+.+++|+.+.
T Consensus       693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~  772 (799)
T KOG4162|consen  693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ  772 (799)
T ss_pred             HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence            99999999999999999999999999999999999999999888888  9999999999999999999999999999875


Q ss_pred             C
Q 021175          309 V  309 (316)
Q Consensus       309 A  309 (316)
                      |
T Consensus       773 A  773 (799)
T KOG4162|consen  773 A  773 (799)
T ss_pred             H
Confidence            4

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.30  E-value=1.4e-11  Score=83.85  Aligned_cols=67  Identities=34%  Similarity=0.671  Sum_probs=64.6

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG-KLDKGISQFETAVKLQP  253 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p  253 (316)
                      ++..|..+|..+...|++++|+.+|+++++    .+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            578899999999999999999999999999    69999999999999999999 79999999999999998

...

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=9.7e-11  Score=103.82  Aligned_cols=144  Identities=18%  Similarity=0.176  Sum_probs=81.7

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      .+|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-+.-.    +--+++++++.++.+|..+.+..+|
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~----il~nn~evl~qianiye~led~aqa  577 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA----ILLNNAEVLVQIANIYELLEDPAQA  577 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHhhCHHHH
Confidence            455555555555555555555555555555555555555555555555444    2334444555555555555555555


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHc----------------------------------CCHHHHHHHHHHHHhcCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKK----------------------------------KDLKSALKAFEEVLLFDP  287 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~----------------------------------g~~~~A~~~~~~al~~~p  287 (316)
                      ++++.++..+-|+++.++..||..|-+.                                  .-.++|+.+|+++--+.|
T Consensus       578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp  657 (840)
T KOG2003|consen  578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP  657 (840)
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence            5555555555555444444444444444                                  445677777777777777


Q ss_pred             CChhHHHHHHHHHhhCCCCCCC
Q 021175          288 NNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       288 ~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +.......++.+.++.|+|++|
T Consensus       658 ~~~kwqlmiasc~rrsgnyqka  679 (840)
T KOG2003|consen  658 NQSKWQLMIASCFRRSGNYQKA  679 (840)
T ss_pred             cHHHHHHHHHHHHHhcccHHHH
Confidence            7777777777777777777655

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.30  E-value=2.6e-10  Score=104.79  Aligned_cols=183  Identities=13%  Similarity=0.093  Sum_probs=130.9

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 021175          115 ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVM  194 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  194 (316)
                      ...++.+.+...+..+....+........           ...+.....|++++|.+.+++..+.+|+++.++..++.+|
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l-----------~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~  197 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPVEI-----------TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY  197 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHHHH-----------HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34555666666666554444443321110           1122344899999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhc--------------------------------------CCCCccHHHHHHHHHHHHHHcC
Q 021175          195 LRRKFYPAATKYLLQAIEKW--------------------------------------DGDDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~--------------------------------------~~~~p~~~~~~~~lg~~~~~~g  236 (316)
                      ...|++++|.+.+.+..+..                                      +...|+++.+...++..+...|
T Consensus       198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g  277 (398)
T PRK10747        198 IRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD  277 (398)
T ss_pred             HHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence            99999999997776655321                                      0123345666667777777777


Q ss_pred             CHHHHHHHHHHHHH-------------------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          237 KLDKGISQFETAVK-------------------------------LQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       237 ~~~~A~~~~~~al~-------------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      +.++|.+.++++++                               .+|+++..+..+|.++...|++++|.++|+++++.
T Consensus       278 ~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~  357 (398)
T PRK10747        278 DHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ  357 (398)
T ss_pred             CHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            77776666666655                               34666778888899999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHhhCCCCCCC
Q 021175          286 DPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       286 ~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +|++.. +..++.++.+.|+.++|
T Consensus       358 ~P~~~~-~~~La~~~~~~g~~~~A  380 (398)
T PRK10747        358 RPDAYD-YAWLADALDRLHKPEEA  380 (398)
T ss_pred             CCCHHH-HHHHHHHHHHcCCHHHH
Confidence            888654 45688888888887654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.29  E-value=7e-10  Score=94.59  Aligned_cols=127  Identities=18%  Similarity=0.254  Sum_probs=117.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175          162 VRRELDLSAKELQEQVRSGDAS-----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g  236 (316)
                      ...+|++|++..++..+..+..     +..+..++..+....+.+.|...+.+|++    .+|+...+-..+|.++...|
T Consensus       153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq----a~~~cvRAsi~lG~v~~~~g  228 (389)
T COG2956         153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ----ADKKCVRASIILGRVELAKG  228 (389)
T ss_pred             HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----hCccceehhhhhhHHHHhcc
Confidence            7889999999999999888754     67899999999999999999999999999    79999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175          237 KLDKGISQFETAVKLQPGY-VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  292 (316)
                      +|++|++.++.+++.||+. +.+.-.|..||.++|+.++....+.++.+..++....
T Consensus       229 ~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~  285 (389)
T COG2956         229 DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE  285 (389)
T ss_pred             chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence            9999999999999999987 6788899999999999999999999999988875433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.29  E-value=1.1e-10  Score=114.77  Aligned_cols=140  Identities=11%  Similarity=0.003  Sum_probs=123.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ++|++++|+..|+++++.+|+.+.+...+..++...|+.++|+.++++++.    ..|........+|.++..+|++++|
T Consensus        46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gdyd~A  121 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKRWDQA  121 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            899999999999999999999965544888999999999999999999996    4677777777779999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      ++.|+++++.+|+++.++..++..+...|+.++|++.++++...+|++... ..++.++...++.
T Consensus       122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~  185 (822)
T PRK14574        122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRN  185 (822)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchH
Confidence            999999999999999999999999999999999999999999999986665 4455555444443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.29  E-value=1.8e-10  Score=108.22  Aligned_cols=127  Identities=20%  Similarity=0.249  Sum_probs=107.5

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKF--------YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR  234 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~  234 (316)
                      .++.++|+..|+++++.+|+++.++..++.++.....        ..++.+..++++.. + .+|.++.+|.-+|..+..
T Consensus       355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al-~-~~~~~~~~~~ala~~~~~  432 (517)
T PRK10153        355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL-P-ELNVLPRIYEILAVQALV  432 (517)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc-c-cCcCChHHHHHHHHHHHh
Confidence            4558899999999999999999999999988766532        33445555554442 0 266678889999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175          235 EGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       235 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  292 (316)
                      .|++++|...+++|++++| +..+|..+|.++...|++++|.+.|++|++++|.++..
T Consensus       433 ~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        433 KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            9999999999999999999 58899999999999999999999999999999998753

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.28  E-value=1.1e-10  Score=104.56  Aligned_cols=125  Identities=16%  Similarity=0.127  Sum_probs=120.0

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 021175          181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWN  260 (316)
Q Consensus       181 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  260 (316)
                      |....+++..+..++..|++++|++.++..++    ..|+++..+...+.++...|+.++|.+.+++++.++|+......
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~----~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~  378 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIA----AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQL  378 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHH
Confidence            56788999999999999999999999999999    79999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          261 NLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       261 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++|.+|.+.|++++|+..++..+.-+|+++..|..|++.+..+|+-.++
T Consensus       379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a  427 (484)
T COG4783         379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA  427 (484)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence            9999999999999999999999999999999999999999999987654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.28  E-value=4e-10  Score=88.62  Aligned_cols=120  Identities=17%  Similarity=0.170  Sum_probs=102.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175          162 VRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~  238 (316)
                      ..++...+...+++..+.+|+.   ..+.+.+|.++...|++++|...|++++...+ ..+....+.+++|.++...|++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP-DPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHcCCH
Confidence            5788888888899999999988   67888999999999999999999999999421 1122356888999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL  283 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  283 (316)
                      ++|+..++. +.-.+-.+.++..+|.+|...|++++|+..|++++
T Consensus       102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999976 34444557788899999999999999999999875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.27  E-value=7.2e-10  Score=94.56  Aligned_cols=149  Identities=13%  Similarity=0.093  Sum_probs=125.8

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATE---YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g  236 (316)
                      .+..|++++|++.|++.+...|..+.+   .+.+|.++++.+++++|+..+++.++..|. +|+.+.+++.+|.++...+
T Consensus        42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-~~~~~~a~Y~~g~~~~~~~  120 (243)
T PRK10866         42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVLYMRGLTNMALD  120 (243)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-CCchHHHHHHHHHhhhhcc
Confidence            347899999999999999999987654   589999999999999999999999998773 7888999999999875554


Q ss_pred             ---------------C---HHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          237 ---------------K---LDKGISQFETAVKLQPGYV-----------------TAWNNLGDAYEKKKDLKSALKAFEE  281 (316)
Q Consensus       237 ---------------~---~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~  281 (316)
                                     |   ..+|++.|++.++..|+..                 .--+..|..|.+.|++..|+.-++.
T Consensus       121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~  200 (243)
T PRK10866        121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQ  200 (243)
T ss_pred             hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence                           1   3578899999999999872                 2234678889999999999999999


Q ss_pred             HHhcCCCC---hhHHHHHHHHHhhCCCCCCC
Q 021175          282 VLLFDPNN---KVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       282 al~~~p~~---~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +++--|+.   +++...+...+..+|..++|
T Consensus       201 v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a  231 (243)
T PRK10866        201 MLRDYPDTQATRDALPLMENAYRQLQLNAQA  231 (243)
T ss_pred             HHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence            99998875   56677778888888887655

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.27  E-value=2.1e-11  Score=82.02  Aligned_cols=64  Identities=33%  Similarity=0.539  Sum_probs=42.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 021175          227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK  290 (316)
Q Consensus       227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  290 (316)
                      .+|..++..|++++|++.|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4566666667777777777777776677777777777777777777777777777766666653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=3.3e-11  Score=105.91  Aligned_cols=119  Identities=23%  Similarity=0.284  Sum_probs=89.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhcCC---CCc--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 021175          188 FELGAVMLRRKFYPAATKYLLQAIEKWDG---DDQ--------DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV  256 (316)
Q Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  256 (316)
                      -.-|+.+++.|+|..|..-|++++...+.   .++        .-..++.|++.|+.++++|.+|++...+++..+|++.
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~  291 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV  291 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence            44566777777777777777777765331   011        1235678888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      .++|..|.++..+|+++.|+..|+++++++|+|..+...+..+.++..++
T Consensus       292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888877776555443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=6.2e-11  Score=103.89  Aligned_cols=137  Identities=16%  Similarity=0.221  Sum_probs=117.6

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASA------------TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALG  229 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg  229 (316)
                      ...+.+.++.+|++++..+|+..            ..+..-|+-.++.|+|.+|.++|..++.+-|.....++..|.|++
T Consensus       215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra  294 (486)
T KOG0550|consen  215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA  294 (486)
T ss_pred             cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence            67889999999999999999763            467788888999999999999999999943322224577899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          230 VSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       230 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      .+..+.|+..+|+...++++.++|....++...|.|+..++++++|++.|+++.+...+ .+.+..+...
T Consensus       295 ~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A  363 (486)
T KOG0550|consen  295 LVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA  363 (486)
T ss_pred             hhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998776 4444444333

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=1.4e-10  Score=102.88  Aligned_cols=143  Identities=13%  Similarity=0.152  Sum_probs=134.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHH
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI  242 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~  242 (316)
                      -.++.+|.++...++.++.-++.+..+.|++.+..|++++|.+.|++++.    .+....++++|+|..+..+|+.++|+
T Consensus       469 gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~----ndasc~ealfniglt~e~~~~ldeal  544 (840)
T KOG2003|consen  469 GKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN----NDASCTEALFNIGLTAEALGNLDEAL  544 (840)
T ss_pred             ccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc----CchHHHHHHHHhcccHHHhcCHHHHH
Confidence            34778899999999999999999999999999999999999999999999    68888999999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       243 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++|-+.-.+--+++++++.++.+|..+.+..+|++++.++..+-|+++.....++.++.+-|+-..|
T Consensus       545 d~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqa  611 (840)
T KOG2003|consen  545 DCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQA  611 (840)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence            9999988888899999999999999999999999999999999999999999999999998886554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.26  E-value=1e-09  Score=91.29  Aligned_cols=150  Identities=18%  Similarity=0.181  Sum_probs=120.3

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 021175          157 IRQVLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV  233 (316)
Q Consensus       157 ~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~  233 (316)
                      +...+..|++++|++.|++.....|..   +++.+.+|.+++..|++++|+..+++.++..|. +|..+.+++.+|.+++
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-SPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--TTHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CcchhhHHHHHHHHHH
Confidence            344558999999999999999988864   689999999999999999999999999998774 7778899999999987


Q ss_pred             HcC-----------CHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          234 REG-----------KLDKGISQFETAVKLQPGYV-----------------TAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       234 ~~g-----------~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      .+.           ...+|+..|++.++..|++.                 .--+..|..|.+.|.+..|+..++.+++.
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~  170 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN  170 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred             HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            653           34589999999999999972                 23356788999999999999999999999


Q ss_pred             CCCCh---hHHHHHHHHHhhCCCCC
Q 021175          286 DPNNK---VARPRRDALKDRVPLYK  307 (316)
Q Consensus       286 ~p~~~---~a~~~l~~l~~~~~~~~  307 (316)
                      -|+.+   ++...+...+.++|..+
T Consensus       171 yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  171 YPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             CCCCchHHHHHHHHHHHHHHhCChH
Confidence            99975   45667777788888654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.26  E-value=3.9e-10  Score=96.97  Aligned_cols=115  Identities=18%  Similarity=0.187  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHH-HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 021175          184 ATEYFELGAVM-LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAW  259 (316)
Q Consensus       184 ~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~  259 (316)
                      ....+..+..+ ...|+|++|+..|++.++.+|. .+..+.+++.+|.+|+..|++++|+..|+++++.+|++   ++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            46778888776 6679999999999999995442 33447899999999999999999999999999998875   7899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          260 NNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       260 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      +.+|.++..+|++++|...|+++++..|++..+......+
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            9999999999999999999999999999988776655444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.25  E-value=4.8e-10  Score=96.35  Aligned_cols=141  Identities=16%  Similarity=0.186  Sum_probs=71.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++..|+..|..+++.+|++-.+++..|.+|..+|+-.-|+.-+.+.++    +.|+...+....|.+++++|++++|
T Consensus        50 a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle----lKpDF~~ARiQRg~vllK~Gele~A  125 (504)
T KOG0624|consen   50 ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE----LKPDFMAARIQRGVVLLKQGELEQA  125 (504)
T ss_pred             HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh----cCccHHHHHHHhchhhhhcccHHHH
Confidence            344444444444444444444444444444444444444444444444444    3444444444444444444444444


Q ss_pred             HHHHHHHHHhCC-------------------------------------------------CcHHHHHHHHHHHHHcCCH
Q 021175          242 ISQFETAVKLQP-------------------------------------------------GYVTAWNNLGDAYEKKKDL  272 (316)
Q Consensus       242 ~~~~~~al~~~p-------------------------------------------------~~~~~~~~lg~~~~~~g~~  272 (316)
                      +..|++.++.+|                                                 =++..+...+.||...|+.
T Consensus       126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~  205 (504)
T KOG0624|consen  126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEP  205 (504)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcH
Confidence            444444444444                                                 3333445555566666666


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          273 KSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       273 ~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      ..|+..++.+-++..++.+.++.+..++..+|+.
T Consensus       206 k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~  239 (504)
T KOG0624|consen  206 KKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDA  239 (504)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHHHhhhhH
Confidence            6666666666666666666655555555555544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=2.5e-10  Score=103.21  Aligned_cols=148  Identities=21%  Similarity=0.264  Sum_probs=124.9

Q ss_pred             HhhhHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC-------------------
Q 021175          162 VRRELDLSAKELQEQVRSGDA-------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWD-------------------  215 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------------------  215 (316)
                      ..|.+.+.+....++++.+-.       ...+...+|..+...++++.|+.+|++++....                   
T Consensus       269 e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e  348 (539)
T KOG0548|consen  269 ERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAE  348 (539)
T ss_pred             hccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Confidence            677777777777766665443       244555677888889999999999999987432                   


Q ss_pred             ---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175          216 ---GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       216 ---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  292 (316)
                         -++|..+.--..-|..++..|+|.+|+..|.+|+..+|+++..|.|.|.||.++|.+..|+...+++++++|+...+
T Consensus       349 ~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg  428 (539)
T KOG0548|consen  349 RKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA  428 (539)
T ss_pred             HHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence               04566666666779999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCC
Q 021175          293 RPRRDALKDRVPLYKGV  309 (316)
Q Consensus       293 ~~~l~~l~~~~~~~~~A  309 (316)
                      +.+-+.++..+.+|.+|
T Consensus       429 y~RKg~al~~mk~ydkA  445 (539)
T KOG0548|consen  429 YLRKGAALRAMKEYDKA  445 (539)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999888888655

>TIGR00540 hemY_coli hemY protein

Probab=99.24  E-value=8.2e-10  Score=101.90  Aligned_cols=148  Identities=10%  Similarity=-0.042  Sum_probs=99.8

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------------------------
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD------------------------  215 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------------------  215 (316)
                      .+..|++++|.+.+++..+..|+++.++..++.++...|++++|.+.+++..+...                        
T Consensus       163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~  242 (409)
T TIGR00540       163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD  242 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            34789999999999999999999999999999999999999999888887775310                        


Q ss_pred             ----------CCCc----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHcCCHHHHHHHH
Q 021175          216 ----------GDDQ----DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAW--NNLGDAYEKKKDLKSALKAF  279 (316)
Q Consensus       216 ----------~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~  279 (316)
                                ...|    +++..+..+|..+...|++++|++.++++++..|++....  ..........++.+++.+.+
T Consensus       243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~  322 (409)
T TIGR00540       243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI  322 (409)
T ss_pred             cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence                      0123    4677788888888999999999999888888776664311  11111122234444444444


Q ss_pred             HHHHhcCCCCh--hHHHHHHHHHhhCCCCC
Q 021175          280 EEVLLFDPNNK--VARPRRDALKDRVPLYK  307 (316)
Q Consensus       280 ~~al~~~p~~~--~a~~~l~~l~~~~~~~~  307 (316)
                      +++++.+|+++  .....+|.++.+.|+++
T Consensus       323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~  352 (409)
T TIGR00540       323 EKQAKNVDDKPKCCINRALGQLLMKHGEFI  352 (409)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence            44444444444  44444444444444443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.22  E-value=4.3e-11  Score=84.89  Aligned_cols=81  Identities=25%  Similarity=0.345  Sum_probs=58.7

Q ss_pred             cCChHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 021175          197 RKFYPAATKYLLQAIEKWDGDDQD--LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS  274 (316)
Q Consensus       197 ~g~~~~A~~~~~~al~~~~~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  274 (316)
                      .|+|++|+.+++++++.    .|.  +...++.+|.++++.|++++|++.+++ .+.+|.+....+.+|.++.++|++++
T Consensus         2 ~~~y~~Ai~~~~k~~~~----~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e   76 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLEL----DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE   76 (84)
T ss_dssp             TT-HHHHHHHHHHHHHH----HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred             CccHHHHHHHHHHHHHH----CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence            56777778888877774    442  566667778888888888888888877 66777777777777888888888888


Q ss_pred             HHHHHHHH
Q 021175          275 ALKAFEEV  282 (316)
Q Consensus       275 A~~~~~~a  282 (316)
                      |++.++++
T Consensus        77 Ai~~l~~~   84 (84)
T PF12895_consen   77 AIKALEKA   84 (84)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            88777764

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.21  E-value=2.4e-09  Score=98.85  Aligned_cols=147  Identities=13%  Similarity=0.103  Sum_probs=126.9

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK  237 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~  237 (316)
                      ......|+...|...+.++++.+|++.+.|...-.+.....++++|...+.++-.     ......+|+.-+.....+++
T Consensus       592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~-----~sgTeRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS-----ISGTERVWMKSANLERYLDN  666 (913)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc-----cCCcchhhHHHhHHHHHhhh
Confidence            3344678999999999999999999999999888888899999999999999887     44557778888888888899


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      .++|+..++++++..|++...|..+|+++.++++.+.|.+.|...++.-|+....|..++.+..+.|..-.|
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA  738 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA  738 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence            999999999999999999999999999999999999999999999999999999999999888888765443

>TIGR00540 hemY_coli hemY protein

Probab=99.21  E-value=7.6e-09  Score=95.50  Aligned_cols=126  Identities=10%  Similarity=0.033  Sum_probs=114.9

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHHHcCCHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLA-QVYNALGVSYVREGKLDK  240 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~-~~~~~lg~~~~~~g~~~~  240 (316)
                      ..|+++.|.+.+.++.+..|+....+...|.++..+|++++|.++++++.+    ..|+.. .+....+.++...|++++
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~----~~p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE----LAGNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcCchHHHHHHHHHHHHCCCHHH
Confidence            799999999999999999999888889999999999999999999999998    466664 466667999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV  291 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  291 (316)
                      |.+.+++..+.+|+++.++..++.++...|++++|.+.+++..+..+.++.
T Consensus       172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~  222 (409)
T TIGR00540       172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE  222 (409)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence            999999999999999999999999999999999999999999987554443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.21  E-value=6.5e-10  Score=83.81  Aligned_cols=99  Identities=20%  Similarity=0.268  Sum_probs=87.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g  236 (316)
                      ....|++++|++.++++++.+|++   +.+++.+|.++...|++++|++++++++...+ .++..+.++..+|.++...|
T Consensus        12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~   90 (119)
T TIGR02795        12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-KSPKAPDALLKLGMSLQELG   90 (119)
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-CCCcccHHHHHHHHHHHHhC
Confidence            348999999999999999998876   67899999999999999999999999999533 13335788999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHH
Q 021175          237 KLDKGISQFETAVKLQPGYVTAW  259 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~~~~~  259 (316)
                      ++++|++.++++++..|++..+.
T Consensus        91 ~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        91 DKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             ChHHHHHHHHHHHHHCcCChhHH
Confidence            99999999999999999987654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=3.8e-11  Score=105.21  Aligned_cols=145  Identities=17%  Similarity=0.183  Sum_probs=133.0

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCcc------------HHHHHHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD------------LAQVYNAL  228 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~------------~~~~~~~l  228 (316)
                      ...+++++|.+.--..++.++.+.++.+..|.+++...+.+.|+.+|++++.    ++|+            ....+..-
T Consensus       180 ~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~----ldpdh~~sk~~~~~~k~le~~k~~  255 (486)
T KOG0550|consen  180 AFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR----LDPDHQKSKSASMMPKKLEVKKER  255 (486)
T ss_pred             hhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc----cChhhhhHHhHhhhHHHHHHHHhh
Confidence            3688999999999999999999999999999999999999999999999999    4554            34566778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          229 GVSYVREGKLDKGISQFETAVKLQPGY----VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       229 g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      |.-.++.|++.+|.+.|.++|.++|++    +..|.+.+.+...+|+..+|+...+.++.++|....++...+.++..++
T Consensus       256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le  335 (486)
T KOG0550|consen  256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE  335 (486)
T ss_pred             hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999987    6789999999999999999999999999999999999999999998888


Q ss_pred             CCCCC
Q 021175          305 LYKGV  309 (316)
Q Consensus       305 ~~~~A  309 (316)
                      +|++|
T Consensus       336 ~~e~A  340 (486)
T KOG0550|consen  336 KWEEA  340 (486)
T ss_pred             HHHHH
Confidence            88655

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.20  E-value=1.1e-10  Score=78.36  Aligned_cols=65  Identities=23%  Similarity=0.435  Sum_probs=58.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 021175          188 FELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV  256 (316)
Q Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  256 (316)
                      +.+|..++..|++++|++.|+++++    .+|+++.+++.+|.++..+|++++|++.|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALK----QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHC----CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4678999999999999999999999    7999999999999999999999999999999999999875

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.17  E-value=2.5e-09  Score=92.03  Aligned_cols=136  Identities=18%  Similarity=0.225  Sum_probs=112.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCH---HH------------HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASA---TE------------YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV  224 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~---~~------------~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~  224 (316)
                      .+.+|++++|+..|++.++.+|.+.   ++            .......+...|+..-|+++..+.++    ..|.++..
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE----i~~Wda~l  191 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE----IQPWDASL  191 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh----cCcchhHH
Confidence            3478888888888888888877431   11            12222344556788888888888888    79999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      +...+.||...|+...||..++.+-++..++.+.++.++..++..|+.+.++...+++++++|++...+-....+
T Consensus       192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl  266 (504)
T KOG0624|consen  192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL  266 (504)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999987765544433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.17  E-value=7.1e-10  Score=78.88  Aligned_cols=90  Identities=24%  Similarity=0.412  Sum_probs=85.2

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|+..++++++..|+...++..+|.++...+++++|+++++++++    ..|.+..++..+|.++...|++++
T Consensus        11 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   86 (100)
T cd00189          11 YKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE----LDPDNAKAYYNLGLAYYKLGKYEE   86 (100)
T ss_pred             HHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcchhHHHHHHHHHHHHHhHHH
Confidence            3789999999999999999999999999999999999999999999999999    688888999999999999999999


Q ss_pred             HHHHHHHHHHhCCC
Q 021175          241 GISQFETAVKLQPG  254 (316)
Q Consensus       241 A~~~~~~al~~~p~  254 (316)
                      |.+.++++++.+|+
T Consensus        87 a~~~~~~~~~~~~~  100 (100)
T cd00189          87 ALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHccCCC
Confidence            99999999998874

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.16  E-value=1.3e-10  Score=82.44  Aligned_cols=82  Identities=15%  Similarity=0.234  Sum_probs=72.6

Q ss_pred             HhhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          162 VRRELDLSAKELQEQVRSGDA--SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      ++|++++|+..+++.++.+|.  +...++.+|.+++..|+|++|++.+++ .+    .+|.+....+.+|.++..+|+++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~----~~~~~~~~~~l~a~~~~~l~~y~   75 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK----LDPSNPDIHYLLARCLLKLGKYE   75 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT----HHHCHHHHHHHHHHHHHHTT-HH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC----CCCCCHHHHHHHHHHHHHhCCHH
Confidence            368999999999999999995  566788899999999999999999999 65    47888899999999999999999


Q ss_pred             HHHHHHHHH
Q 021175          240 KGISQFETA  248 (316)
Q Consensus       240 ~A~~~~~~a  248 (316)
                      +|++.++++
T Consensus        76 eAi~~l~~~   84 (84)
T PF12895_consen   76 EAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            999999875

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=8.7e-09  Score=90.66  Aligned_cols=146  Identities=15%  Similarity=0.109  Sum_probs=119.0

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------------------------
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD------------------------  215 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------------------  215 (316)
                      ....++.++|+-.|+.+....|.+-++|..+-.+|...|++.||....+.+++..+                        
T Consensus       344 L~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKA  423 (564)
T KOG1174|consen  344 LIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKA  423 (564)
T ss_pred             HHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHH
Confidence            34677777888888888888887777777777777777777666665555554321                        


Q ss_pred             --------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175          216 --------GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP  287 (316)
Q Consensus       216 --------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  287 (316)
                              ..+|....+-..++..+...|++..++..+++.+...|++ ..+..||.++...+.+++|+++|..+++++|
T Consensus       424 Kkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP  502 (564)
T KOG1174|consen  424 KKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDP  502 (564)
T ss_pred             HHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence                    1678888888889999999999999999999999988864 5688899999999999999999999999999


Q ss_pred             CChhHHHHHHHHHhhCCCC
Q 021175          288 NNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       288 ~~~~a~~~l~~l~~~~~~~  306 (316)
                      ++..+...+..+++...+.
T Consensus       503 ~~~~sl~Gl~~lEK~~~~~  521 (564)
T KOG1174|consen  503 KSKRTLRGLRLLEKSDDES  521 (564)
T ss_pred             cchHHHHHHHHHHhccCCC
Confidence            9999999999888776643

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.14  E-value=2.2e-09  Score=86.92  Aligned_cols=90  Identities=19%  Similarity=0.332  Sum_probs=81.1

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC-
Q 021175          162 VRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK-  237 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~-  237 (316)
                      ..|++++|+..++++++..|+.   ..++.++|.++...|++++|+.+++++++    ..|.+...+..+|.++...|+ 
T Consensus        47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~  122 (172)
T PRK02603         47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE----LNPKQPSALNNIAVIYHKRGEK  122 (172)
T ss_pred             HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCh
Confidence            8899999999999999887653   57999999999999999999999999999    689999999999999999887 


Q ss_pred             -------------HHHHHHHHHHHHHhCCCc
Q 021175          238 -------------LDKGISQFETAVKLQPGY  255 (316)
Q Consensus       238 -------------~~~A~~~~~~al~~~p~~  255 (316)
                                   +++|++.++++++.+|++
T Consensus       123 ~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        123 AEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence                         577888888888888876

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.13  E-value=9e-10  Score=101.53  Aligned_cols=146  Identities=12%  Similarity=0.139  Sum_probs=137.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      .+..++|.+.++..+..++..|++++.....|..+...|+-++|.++.+.++.    .++.+..+|.-+|.++...++|+
T Consensus        17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr----~d~~S~vCwHv~gl~~R~dK~Y~   92 (700)
T KOG1156|consen   17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR----NDLKSHVCWHVLGLLQRSDKKYD   92 (700)
T ss_pred             HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc----cCcccchhHHHHHHHHhhhhhHH
Confidence            34788999999999999999999999999999999999999999999999999    79999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +|+++|+.|+.+.|++.+.+..++..-.++++++.....-.+.++..|+.-..|...+......|++..|
T Consensus        93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A  162 (700)
T KOG1156|consen   93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA  162 (700)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888888887654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.12  E-value=2e-09  Score=97.36  Aligned_cols=151  Identities=10%  Similarity=0.046  Sum_probs=128.2

Q ss_pred             HHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175          159 QVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       159 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~  238 (316)
                      .....|++++|.+.++++++.+|++..++.. +..+...|++..+.....++++.....+|........+|.++...|++
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~  130 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY  130 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence            3457899999999999999999999988776 666766666666666666666543336788888889999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----HHHHHHHHHhhCCCCCCCC
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV----ARPRRDALKDRVPLYKGVP  310 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~l~~l~~~~~~~~~A~  310 (316)
                      ++|++.++++++++|+++.++..+|.++...|++++|+.++++++...|.++.    .+..++.++...|++++|.
T Consensus       131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~  206 (355)
T cd05804         131 DRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL  206 (355)
T ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999875443    3557899999999998763

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.12  E-value=1.7e-09  Score=103.94  Aligned_cols=154  Identities=18%  Similarity=0.276  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCcc--HHHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD--LAQV  224 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~--~~~~  224 (316)
                      ++..+|.+|.     ...+...|.++|+++.++++.+..+.-..+..|....++++|....-.+-+    ..|.  ....
T Consensus       494 af~~LG~iYr-----d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q----ka~a~~~k~n  564 (1238)
T KOG1127|consen  494 AFAFLGQIYR-----DSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ----KAPAFACKEN  564 (1238)
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh----hchHHHHHhh
Confidence            3444455554     555778899999999999999999999999999999999999988666655    2442  3445


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      |..+|..|.+.++..+|+..|+.+++.+|++..+|..+|.+|...|++..|++.|.++..++|.+.-+.+-.+.+....|
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G  644 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG  644 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence            66799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 021175          305 LYKGV  309 (316)
Q Consensus       305 ~~~~A  309 (316)
                      .|+++
T Consensus       645 kYkea  649 (1238)
T KOG1127|consen  645 KYKEA  649 (1238)
T ss_pred             hHHHH
Confidence            98765

>PRK11906 transcriptional regulator; Provisional

Probab=99.12  E-value=3.1e-09  Score=95.77  Aligned_cols=128  Identities=10%  Similarity=0.025  Sum_probs=116.3

Q ss_pred             hhhHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 021175          163 RRELDLSAKELQEQV---RSGDASATEYFELGAVMLRR---------KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGV  230 (316)
Q Consensus       163 ~~~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~  230 (316)
                      ....+.|...|.+++   ..+|+.+.+|..++.++...         .+-.+|.+..++|++    ++|.++.++..+|.
T Consensus       271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve----ld~~Da~a~~~~g~  346 (458)
T PRK11906        271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD----ITTVDGKILAIMGL  346 (458)
T ss_pred             HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh----cCCCCHHHHHHHHH
Confidence            345678999999999   99999999999999988764         245678999999999    79999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175          231 SYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP  294 (316)
Q Consensus       231 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  294 (316)
                      +....++++.|+..|++|+.++|+.+.+++..|.+..-.|+.++|.+..+++++++|.-..+-.
T Consensus       347 ~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~  410 (458)
T PRK11906        347 ITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV  410 (458)
T ss_pred             HHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998655543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=8.8e-10  Score=87.96  Aligned_cols=115  Identities=22%  Similarity=0.365  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175          185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD-QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG  263 (316)
Q Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  263 (316)
                      +.+-.-|+-++..|+|++|...|..|++.+|... .....+|.|.|.+.+++++++.|++.+.++++++|.+..+....+
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA  175 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA  175 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence            3455668889999999999999999999766421 234667889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          264 DAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       264 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      .+|.++..+++|+..|++.++.+|...++......+
T Consensus       176 eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  176 EAYEKMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            999999999999999999999999988887776554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.09  E-value=5e-08  Score=89.68  Aligned_cols=126  Identities=10%  Similarity=0.027  Sum_probs=105.4

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHhcCCCCccHHH-HHHHHHHHHHHcCCHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFEL-GAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQ-VYNALGVSYVREGKLD  239 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~-~~~~lg~~~~~~g~~~  239 (316)
                      ..|++++|.+...+.-+..+. +..++.+ +.+....|++++|.++++++.+    .+|+... .....+.++...|+++
T Consensus        96 ~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~----~~~~~~~~~~l~~a~l~l~~g~~~  170 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAE----LADNDQLPVEITRVRIQLARNENH  170 (398)
T ss_pred             hCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHCCCHH
Confidence            579999999888876665443 4444444 5666999999999999999999    5777643 3345599999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  292 (316)
                      +|.+.+++..+.+|+++.++..++.+|...|++++|.+.+.+..+..+.++..
T Consensus       171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~  223 (398)
T PRK10747        171 AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH  223 (398)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence            99999999999999999999999999999999999999999988877765443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.09  E-value=4.2e-09  Score=84.94  Aligned_cols=91  Identities=20%  Similarity=0.274  Sum_probs=77.8

Q ss_pred             HhhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH-----
Q 021175          162 VRRELDLSAKELQEQVRSGDA---SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV-----  233 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~-----  233 (316)
                      ..|++++|+..+++++...|+   .+.++.++|.++...|++++|++.++++++    .+|.....+.++|.++.     
T Consensus        47 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~----~~~~~~~~~~~la~i~~~~~~~  122 (168)
T CHL00033         47 SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE----RNPFLPQALNNMAVICHYRGEQ  122 (168)
T ss_pred             HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCcHHHHHHHHHHHHHhhHH
Confidence            789999999999999988775   346899999999999999999999999999    68888888888888888     


Q ss_pred             --HcCCHH-------HHHHHHHHHHHhCCCcH
Q 021175          234 --REGKLD-------KGISQFETAVKLQPGYV  256 (316)
Q Consensus       234 --~~g~~~-------~A~~~~~~al~~~p~~~  256 (316)
                        .+|+++       +|+..+++++..+|++.
T Consensus       123 ~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        123 AIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence              777877       55666666777777653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.09  E-value=4.1e-09  Score=79.31  Aligned_cols=99  Identities=18%  Similarity=0.082  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHH
Q 021175          185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG---YVTAWNN  261 (316)
Q Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~  261 (316)
                      .+++++|.++-..|+.++|+.+|+++++... ..+.-..++..+|.++...|++++|+..+++++...|+   +......
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            5788999999999999999999999998421 23455779999999999999999999999999999888   7788888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Q 021175          262 LGDAYEKKKDLKSALKAFEEVLL  284 (316)
Q Consensus       262 lg~~~~~~g~~~~A~~~~~~al~  284 (316)
                      ++.++...|+.++|+..+-.++.
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999988775

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.08  E-value=4e-09  Score=88.83  Aligned_cols=112  Identities=20%  Similarity=0.238  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHH
Q 021175          187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAWNNLG  263 (316)
Q Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg  263 (316)
                      .++.+.-++..|+|.+|.+-|.+-++.+|. .+..+.+++.||.+++.+|+|++|...|..+.+-.|++   +++++.+|
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            799999999999999999999999997773 66778999999999999999999999999999998876   78999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          264 DAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       264 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      .+...+|+.++|...|+++++.-|+...+......+
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            999999999999999999999999988877655444

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=8.4e-09  Score=90.75  Aligned_cols=146  Identities=12%  Similarity=0.062  Sum_probs=122.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      .+..++++.|+.+-+++++.+|++..++...|.++...|+.++|+-.|+.|..    +.|...++|-.|-.+|...|++.
T Consensus       310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~----Lap~rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM----LAPYRLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh----cchhhHHHHHHHHHHHHhhchHH
Confidence            45678899999999999999999999999999999999999999999999999    78999999999999999999998


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLG-DAY-EKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg-~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ||...-+.+++.-|+++.+.-.+| .++ ..---.++|.+.++++++++|++..+...++.+...-|.++++
T Consensus       386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~  457 (564)
T KOG1174|consen  386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDI  457 (564)
T ss_pred             HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchH
Confidence            888888888888888888877776 333 3333447788888888888888888888888888777777653

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.08  E-value=3.9e-10  Score=96.89  Aligned_cols=109  Identities=20%  Similarity=0.204  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175          187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY  266 (316)
Q Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  266 (316)
                      .-..|+.|+++|+|++|++||.+++.    ..|.++..+.|.+.+|++.+++..|...++.|+.++..+..+|...|.+.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia----~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR  175 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIA----VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQAR  175 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhc----cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence            46789999999999999999999999    79999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          267 EKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       267 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      ..+|...+|.+.++.++++.|++.+....++.+
T Consensus       176 ~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  176 ESLGNNMEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            999999999999999999999988776666544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.08  E-value=2.6e-09  Score=91.85  Aligned_cols=96  Identities=18%  Similarity=0.224  Sum_probs=89.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175          162 VRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~  238 (316)
                      ..|++++|+..|++.++..|+.   +.+++.+|.+|+..|++++|+..|+++++.+| .+|..+.+++.+|.++..+|++
T Consensus       155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~  233 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDT  233 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCH
Confidence            5789999999999999999987   58999999999999999999999999999766 4777899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHH
Q 021175          239 DKGISQFETAVKLQPGYVTA  258 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~  258 (316)
                      ++|.+.|+++++..|+...+
T Consensus       234 ~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        234 AKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHHHHHCcCCHHH
Confidence            99999999999999998654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=4e-09  Score=92.94  Aligned_cols=124  Identities=19%  Similarity=0.217  Sum_probs=109.2

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDA---------------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV  224 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~  224 (316)
                      +++.|+|..|...|++++..-+.               ...++.|++.++.++++|.+|+.+-.++++    ++|++..+
T Consensus       218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe----~~~~N~KA  293 (397)
T KOG0543|consen  218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE----LDPNNVKA  293 (397)
T ss_pred             HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh----cCCCchhH
Confidence            34899999999999998874331               135899999999999999999999999999    79999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCC
Q 021175          225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS-ALKAFEEVLLFDP  287 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~p  287 (316)
                      ++..|.++..+|+|+.|+..|+++++++|++..+...+..+-.+..++.+ ..+.|.+.+..-+
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999887766654 4788888887654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.06  E-value=7.1e-09  Score=93.70  Aligned_cols=121  Identities=17%  Similarity=0.236  Sum_probs=109.1

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..++++.|++.+++..+.+|+   +...++.++...++..+|++.++++++    ..|.+...+...+..+..+++++.|
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~----~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALK----ENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            567899999999999998875   567789999999999999999999999    6899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  289 (316)
                      ++..+++++..|++...|+.|+.+|..+|++++|+..++.+=...+++
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~  301 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKD  301 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence            999999999999999999999999999999999998887554443333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.05  E-value=6.9e-10  Score=75.17  Aligned_cols=66  Identities=24%  Similarity=0.326  Sum_probs=53.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175          233 VREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA  298 (316)
Q Consensus       233 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  298 (316)
                      +..|++++|++.|+++++.+|++..+++.+|.+|.+.|++++|...+++++..+|+++..+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            567888888888888888888888888888888888888888888888888888887777666654

...

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.04  E-value=5.7e-10  Score=104.09  Aligned_cols=125  Identities=20%  Similarity=0.315  Sum_probs=95.6

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      .+.+++++++.++++..++++|-....|+.+|.+..+.++++.|.+.|.+++.    ++|++.++|+|++.+|...|+..
T Consensus       495 ~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt----L~Pd~~eaWnNls~ayi~~~~k~  570 (777)
T KOG1128|consen  495 ILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT----LEPDNAEAWNNLSTAYIRLKKKK  570 (777)
T ss_pred             cccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh----cCCCchhhhhhhhHHHHHHhhhH
Confidence            34567777777777777777777777777777777777777777777777777    67777777777777777777777


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN  288 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  288 (316)
                      +|...+++|++.+-+++..|-|.-.+..+.|.+++|++.|.+.+.+..+
T Consensus       571 ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  571 RAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             HHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence            7777777777777777777777777777777777777777777765433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.04  E-value=1.4e-09  Score=74.69  Aligned_cols=70  Identities=20%  Similarity=0.344  Sum_probs=55.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175          229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA  298 (316)
Q Consensus       229 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  298 (316)
                      ..+|...+++++|+++++++++++|+++..+...|.++..+|++++|...++++++.+|+++.+....+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            4567788888888888888888888888888888888888888888888888888888877776655543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.04  E-value=2.6e-09  Score=99.83  Aligned_cols=144  Identities=20%  Similarity=0.236  Sum_probs=126.8

Q ss_pred             HhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          162 VRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ..||.-.--..|+++.+... .++.+...+|......++|+++.++++..++    ++|.....|+++|.+..+.++++.
T Consensus       462 ~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~----~nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  462 LLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLE----INPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             HhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhh----cCccchhHHHhccHHHHHHhhhHH
Confidence            34454444556666666543 3566788888888889999999999999999    799999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |.+.|..++.++|++..+|+|++..|...|+..+|...++++++.+-+++..|.|.-.+..+.|.+++|
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda  606 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA  606 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence            999999999999999999999999999999999999999999999999999999998888888887654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.03  E-value=1.2e-08  Score=78.07  Aligned_cols=111  Identities=21%  Similarity=0.327  Sum_probs=96.9

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAW  259 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~  259 (316)
                      .+..++.-|...++.|+|++|++.|+.....+| ..|....+...+|.+|++.|++++|+..+++-++++|++   .-++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            466788999999999999999999999998776 467778899999999999999999999999999999987   4678


Q ss_pred             HHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCChhHHH
Q 021175          260 NNLGDAYEKKKD---------------LKSALKAFEEVLLFDPNNKVARP  294 (316)
Q Consensus       260 ~~lg~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~a~~  294 (316)
                      +..|.++..+.+               ..+|...|++.++.-|++.-+-.
T Consensus        88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            889999888876               78999999999999999876543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.99  E-value=3.5e-08  Score=91.43  Aligned_cols=143  Identities=15%  Similarity=0.139  Sum_probs=111.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      .+.++++|...|.++....| ....|+.-+.....+++.++|++.++++++    ..|+....|..+|.++.++++.+.|
T Consensus       630 en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk----~fp~f~Kl~lmlGQi~e~~~~ie~a  704 (913)
T KOG0495|consen  630 ENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALK----SFPDFHKLWLMLGQIEEQMENIEMA  704 (913)
T ss_pred             ccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHH----hCCchHHHHHHHhHHHHHHHHHHHH
Confidence            56677778888887777655 456677777777777888888888888888    5777788888888888888888888


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      .+.|...++.-|+....|..|+.+-.+.|+.-.|...++++.-.+|++...|...-+++.+.|+.+.|
T Consensus       705 R~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a  772 (913)
T KOG0495|consen  705 REAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQA  772 (913)
T ss_pred             HHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHH
Confidence            88888888888888888888888888888888888888888888888887777777777777765543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.99  E-value=8.7e-09  Score=100.99  Aligned_cols=121  Identities=15%  Similarity=0.175  Sum_probs=107.4

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---------------CCccHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---------------DDQDLAQVYN  226 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------~~p~~~~~~~  226 (316)
                      ..++++++++.++.+++.+|+....++.+|.++...++++++...  +++...+.               ..+++-.+++
T Consensus        43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~  120 (906)
T PRK14720         43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALR  120 (906)
T ss_pred             hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHH
Confidence            899999999999999999999999999999999999988877766  66653221               1234447999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      .+|.||-++|++++|.+.|+++++.+|+++.+..++|..|... +.++|..++.+|++.
T Consensus       121 ~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        121 TLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999 999999999999876

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.96  E-value=3.2e-09  Score=95.59  Aligned_cols=69  Identities=14%  Similarity=0.125  Sum_probs=60.4

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 021175          179 SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV---YNALGVSYVREGKLDKGISQFETAVKL  251 (316)
Q Consensus       179 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~  251 (316)
                      .+|+++.+++++|.++...|+|++|+..|+++++    ++|++..+   |+|+|.+|..+|++++|++++++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6788889999999999999999999999999998    68887754   899999999999999999999999887

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.96  E-value=6.5e-08  Score=84.73  Aligned_cols=169  Identities=15%  Similarity=0.091  Sum_probs=118.3

Q ss_pred             ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCC------CCHHHHHHH
Q 021175          117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGD------ASATEYFEL  190 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l  190 (316)
                      -++...|.+.|..+..........+. ..-.+...+..      +...++++|++.+++++...-      .-+.++..+
T Consensus        48 ~~~~~~A~~ay~kAa~~~~~~~~~~~-Aa~~~~~Aa~~------~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   48 AKDWEKAAEAYEKAADCYEKLGDKFE-AAKAYEEAANC------YKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHTT-HHH-HHHHHHHHHHH------HHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HhccchhHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHH------HHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            34555566677655444433322221 11222333333      356699999999999988532      226789999


Q ss_pred             HHHHHHc-CChHHHHHHHHHHHHhcCCCC-c-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHH
Q 021175          191 GAVMLRR-KFYPAATKYLLQAIEKWDGDD-Q-DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY-------VTAWN  260 (316)
Q Consensus       191 g~~~~~~-g~~~~A~~~~~~al~~~~~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~  260 (316)
                      |.+|... |++++|+++|++|++.+...+ + ....++..+|.++...|+|++|++.|++.....-++       ...++
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            9999999 999999999999999765322 2 335678899999999999999999999998754221       24556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175          261 NLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       261 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  292 (316)
                      ..+.|+...||...|...+++....+|+....
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s  232 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCSQDPSFASS  232 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            78889999999999999999999999976443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.95  E-value=1.7e-08  Score=78.99  Aligned_cols=94  Identities=14%  Similarity=-0.033  Sum_probs=87.6

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      .+.+|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..    ++++++...+..|.||..+|+.+
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~----l~~~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT----LLKNDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cccCCCCccchHHHHHHHhCCHH
Confidence            45899999999999999999999999999999999999999999999999999    68999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHH
Q 021175          240 KGISQFETAVKLQPGYVTA  258 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~  258 (316)
                      +|...|+.++. .|.+...
T Consensus       123 ~A~~~f~~a~~-~~~~~~l  140 (165)
T PRK15331        123 KARQCFELVNE-RTEDESL  140 (165)
T ss_pred             HHHHHHHHHHh-CcchHHH
Confidence            99999999998 5665443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.95  E-value=6.1e-08  Score=95.16  Aligned_cols=134  Identities=15%  Similarity=0.174  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          168 LSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFET  247 (316)
Q Consensus       168 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  247 (316)
                      .+++++.+.+...+++..+++.+|.+|.++|++++|.+.|+++++    .+|+++.+.+++|..|... +.++|++++.+
T Consensus       100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~----~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K  174 (906)
T PRK14720        100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK----ADRDNPEIVKKLATSYEEE-DKEKAITYLKK  174 (906)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            566677777777777779999999999999999999999999999    7999999999999999999 99999999999


Q ss_pred             HHHhC--------------------CCcHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175          248 AVKLQ--------------------PGYVT--------------------AWNNLGDAYEKKKDLKSALKAFEEVLLFDP  287 (316)
Q Consensus       248 al~~~--------------------p~~~~--------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  287 (316)
                      |+...                    |++.+                    .+.-+-.+|...+++++++..++.+++.+|
T Consensus       175 AV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~  254 (906)
T PRK14720        175 AIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN  254 (906)
T ss_pred             HHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence            88652                    33322                    222333788899999999999999999999


Q ss_pred             CChhHHHHHHHHHhhCCCCCC
Q 021175          288 NNKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       288 ~~~~a~~~l~~l~~~~~~~~~  308 (316)
                      +|..+...+..++.  +.|++
T Consensus       255 ~n~~a~~~l~~~y~--~kY~~  273 (906)
T PRK14720        255 KNNKAREELIRFYK--EKYKD  273 (906)
T ss_pred             cchhhHHHHHHHHH--HHccC
Confidence            99999999998887  45543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.93  E-value=9.8e-08  Score=89.52  Aligned_cols=150  Identities=15%  Similarity=0.110  Sum_probs=118.3

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhcC-------------------
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK-----FYPAATKYLLQAIEKWD-------------------  215 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~-------------------  215 (316)
                      ++..|++++|...|++.++.+|++...+..+..+.....     +.+.-.+.|++....+|                   
T Consensus        48 l~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~  127 (517)
T PF12569_consen   48 LLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFK  127 (517)
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHH
Confidence            448899999999999999999999988888888773332     34444555555443221                   


Q ss_pred             --------------------------------------------------CC--------CccH--HHHHHHHHHHHHHc
Q 021175          216 --------------------------------------------------GD--------DQDL--AQVYNALGVSYVRE  235 (316)
Q Consensus       216 --------------------------------------------------~~--------~p~~--~~~~~~lg~~~~~~  235 (316)
                                                                        ..        .|..  ..+++.++..|-..
T Consensus       128 ~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~  207 (517)
T PF12569_consen  128 ERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL  207 (517)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence                                                              00        1111  34668889999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |++++|+++.++||+..|..++.|+..|.++...|++++|.++++.+..+|+.+--.-...+....+.|+.++|
T Consensus       208 g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A  281 (517)
T PF12569_consen  208 GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEA  281 (517)
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999998877777777777777777655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK11906 transcriptional regulator; Provisional

Probab=98.91  E-value=8.3e-08  Score=86.72  Aligned_cols=160  Identities=11%  Similarity=0.007  Sum_probs=120.1

Q ss_pred             chHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          119 ENVQMDAVYEIGE---LFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       119 ~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      +...|..++..+.   ..+|.....+...  ++......+.+... ...+..+|.+..+++++.+|.++.++..+|.+..
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~l--A~~h~~~~~~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~  349 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLL--AECHMSLALHGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITG  349 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHH--HHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            3445555666555   4555545444433  22222222222212 4667789999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHcCCHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWN-NLGDAYEKKKDLKS  274 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~g~~~~  274 (316)
                      ..++++.|...|++|+.    ++|+.+.+++..|.+..-.|+.++|.+.++++++++|.-..+-. .+..-.+-....++
T Consensus       350 ~~~~~~~a~~~f~rA~~----L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~  425 (458)
T PRK11906        350 LSGQAKVSHILFEQAKI----HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKN  425 (458)
T ss_pred             hhcchhhHHHHHHHHhh----cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhh
Confidence            99999999999999999    79999999999999999999999999999999999998754433 33331344566788


Q ss_pred             HHHHHHHHHhc
Q 021175          275 ALKAFEEVLLF  285 (316)
Q Consensus       275 A~~~~~~al~~  285 (316)
                      |++.|-+-.+.
T Consensus       426 ~~~~~~~~~~~  436 (458)
T PRK11906        426 NIKLYYKETES  436 (458)
T ss_pred             hHHHHhhcccc
Confidence            98887665443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.90  E-value=4.2e-09  Score=73.38  Aligned_cols=67  Identities=25%  Similarity=0.367  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC---ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD---QDLAQVYNALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      +.++.++|.++...|++++|+++|+++++......   |..+.++.++|.++..+|++++|+++++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34445555555555555555555555555421111   12234444444444444444444444444444

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.89  E-value=5.3e-08  Score=83.09  Aligned_cols=109  Identities=16%  Similarity=0.145  Sum_probs=91.8

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHH
Q 021175          182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTA  258 (316)
Q Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~  258 (316)
                      ..+..++..|......|+|++|++.|++.+...|. .|.-..+.+.+|.+|++.+++++|+..+++.++.+|++   +.+
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence            46777889999999999999999999999996442 34445566999999999999999999999999999987   678


Q ss_pred             HHHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCChh
Q 021175          259 WNNLGDAYEKKK---------------D---LKSALKAFEEVLLFDPNNKV  291 (316)
Q Consensus       259 ~~~lg~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~  291 (316)
                      ++.+|.++...+               |   ..+|+..+++.++..|++.-
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y  159 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY  159 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence            899998875554               1   25788999999999998743

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.88  E-value=5.1e-09  Score=70.87  Aligned_cols=64  Identities=20%  Similarity=0.291  Sum_probs=34.9

Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG  263 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  263 (316)
                      ..|++++|++.|+++++    .+|++..+++.+|.+|...|++++|.+.+++++..+|+++..+..++
T Consensus         3 ~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQ----RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHH----HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            44555555555555555    35555555555555555555555555555555555555554444443

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.88  E-value=1.4e-08  Score=69.76  Aligned_cols=70  Identities=21%  Similarity=0.296  Sum_probs=62.0

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175          190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG  263 (316)
Q Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  263 (316)
                      |..+|...+++++|+++++++++    .+|+++..+..+|.++..+|++++|++.++++++..|++..+....+
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALE----LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHH----hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            35678899999999999999999    69999999999999999999999999999999999998887765544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.88  E-value=1e-07  Score=79.28  Aligned_cols=110  Identities=25%  Similarity=0.375  Sum_probs=91.5

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAW  259 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~  259 (316)
                      .+..++..|...+..|+|++|++.|++.+...| ..|....+.+.+|.+++..|++++|+..+++.++..|++   +.++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            567899999999999999999999999999877 377889999999999999999999999999999999987   5788


Q ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhHH
Q 021175          260 NNLGDAYEKKK-----------DLKSALKAFEEVLLFDPNNKVAR  293 (316)
Q Consensus       260 ~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~  293 (316)
                      +.+|.++..+.           ...+|...|++.++..|+++-+.
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~  127 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE  127 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH
Confidence            99999876643           34589999999999999986554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.88  E-value=6.4e-09  Score=72.47  Aligned_cols=69  Identities=28%  Similarity=0.472  Sum_probs=59.8

Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175          218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ---P----GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD  286 (316)
Q Consensus       218 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  286 (316)
                      +|+.+.++.++|.+|..+|++++|+++|++++++.   +    ..+.++.++|.++..+|++++|++++++++++.
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            47788999999999999999999999999999762   2    236789999999999999999999999999763

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.87  E-value=3.3e-08  Score=89.16  Aligned_cols=69  Identities=26%  Similarity=0.322  Sum_probs=63.6

Q ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTA---WNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       217 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      .+|+++.+++|+|.+|+.+|+|++|+..|+++++++|++.++   |+|+|.+|..+|++++|++++++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            489999999999999999999999999999999999999854   999999999999999999999999987

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.87  E-value=8e-08  Score=75.48  Aligned_cols=113  Identities=13%  Similarity=0.042  Sum_probs=95.0

Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAWNNLGDAYEKKKDL  272 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~  272 (316)
                      ..++.+.+.+.+++.++..+ ..+....+.+.+|.+++..|++++|++.|++++...|+.   ..+...++.++...|++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            57888999888999998433 133347788889999999999999999999999988665   56888999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175          273 KSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP  310 (316)
Q Consensus       273 ~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~  310 (316)
                      ++|+..++. +.-.+-.+.+...+|.++.+.|++++|.
T Consensus       102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~  138 (145)
T PF09976_consen  102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEAR  138 (145)
T ss_pred             HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHH
Confidence            999999976 4445566788899999999999998763

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=2.3e-08  Score=85.23  Aligned_cols=106  Identities=17%  Similarity=0.157  Sum_probs=95.0

Q ss_pred             hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHH
Q 021175          200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK---DLKSAL  276 (316)
Q Consensus       200 ~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~  276 (316)
                      .++-+.-++.-++    .+|++++-|..||.+|+.+|+++.|...|++|+++.|++++.+..+|.++..+.   ...++.
T Consensus       138 ~~~l~a~Le~~L~----~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~  213 (287)
T COG4235         138 MEALIARLETHLQ----QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR  213 (287)
T ss_pred             HHHHHHHHHHHHH----hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence            4455556677777    599999999999999999999999999999999999999999999999877643   357899


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          277 KAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       277 ~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ..+++++..+|++..+...|+..+...|+|++|
T Consensus       214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A  246 (287)
T COG4235         214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEA  246 (287)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence            999999999999999999999999999999765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.86  E-value=9.8e-08  Score=83.51  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=98.3

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK--FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK  237 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~  237 (316)
                      ++..++.+.|.+.+++..+.+++..-.....+.+....|  ++++|...|++..+    ..+.++..++.++.+++.+|+
T Consensus       141 ~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~~~t~~~lng~A~~~l~~~~  216 (290)
T PF04733_consen  141 LLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD----KFGSTPKLLNGLAVCHLQLGH  216 (290)
T ss_dssp             HHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS--SHHHHHHHHHHHHHCT-
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHhCC
Confidence            447888899999998887777665555555555555544  58899999999776    356677888889999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhHHH
Q 021175          238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDL-KSALKAFEEVLLFDPNNKVARP  294 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~  294 (316)
                      |++|.+.++++++.+|+++++..|+..+...+|+. +.+.+++.+....+|+++....
T Consensus       217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~  274 (290)
T PF04733_consen  217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD  274 (290)
T ss_dssp             HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence            99999999999999999999999999998888888 5566777777778888775543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.85  E-value=4.8e-08  Score=94.16  Aligned_cols=145  Identities=19%  Similarity=0.214  Sum_probs=134.2

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ..+++...+...|-++++++|..+.++..+|..|...-|...|.++|++|.+    +++.++.+.-..+.+|....++++
T Consensus       469 ~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe----LDatdaeaaaa~adtyae~~~we~  544 (1238)
T KOG1127|consen  469 CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE----LDATDAEAAAASADTYAEESTWEE  544 (1238)
T ss_pred             HhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCchhhhhHHHHHHHhhccccHHH
Confidence            3456688999999999999999999999999999999999999999999999    799999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          241 GISQFETAVKLQPGY--VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       241 A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |.+..-.+-+..|..  ...|..+|..|.+.++..+|+..++.+++.+|++...|..++..|.+.|++..|
T Consensus       545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~A  615 (1238)
T KOG1127|consen  545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHA  615 (1238)
T ss_pred             HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehH
Confidence            999988888888765  355667999999999999999999999999999999999999999999998755

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.85  E-value=3.4e-08  Score=86.42  Aligned_cols=137  Identities=17%  Similarity=0.026  Sum_probs=114.2

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC--CHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG--KLD  239 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g--~~~  239 (316)
                      ..|++++|++.+.+.     ...++......++...++++.|.+.+++..+    .+.+..-+....+.+....|  +++
T Consensus       114 ~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~----~~eD~~l~qLa~awv~l~~g~e~~~  184 (290)
T PF04733_consen  114 HEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ----IDEDSILTQLAEAWVNLATGGEKYQ  184 (290)
T ss_dssp             CCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC----CSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred             HcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHhCchhHH
Confidence            689999998877653     5677888888999999999999999999877    67776666666666666666  599


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCC
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK  307 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~  307 (316)
                      +|...|++..+..+..+...+.++.++..+|++++|.+.++++++.+|+++++..++..+...+|+..
T Consensus       185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~  252 (290)
T PF04733_consen  185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT  252 (290)
T ss_dssp             HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence            99999999888888899999999999999999999999999999999999999999999999888763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.82  E-value=7.3e-08  Score=87.18  Aligned_cols=112  Identities=16%  Similarity=0.097  Sum_probs=102.9

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 021175          191 GAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK  270 (316)
Q Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  270 (316)
                      -..+...+++++|++.+++..+    .+|+   +...++.++...++..+|++.++++++.+|.+...+...+..+.+.|
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~----~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRE----RDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHh----cCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            3445567899999999999998    4665   56668999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          271 DLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       271 ~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +++.|++..++++++.|++-..|..|+.+|..+|++++|
T Consensus       249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999999999999999999876

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.81  E-value=5.8e-08  Score=78.71  Aligned_cols=90  Identities=11%  Similarity=0.074  Sum_probs=81.7

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|-++-|.-.|.+++.+.|+.+++++.+|..+...|+|+.|.+.|+..++    ++|....++.|.|..++.-|+++-|
T Consensus        77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E----LDp~y~Ya~lNRgi~~YY~gR~~LA  152 (297)
T COG4785          77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAHLNRGIALYYGGRYKLA  152 (297)
T ss_pred             hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc----cCCcchHHHhccceeeeecCchHhh
Confidence            567777888889999999999999999999999999999999999999999    7999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCc
Q 021175          242 ISQFETAVKLQPGY  255 (316)
Q Consensus       242 ~~~~~~al~~~p~~  255 (316)
                      .+.+.+--+-+|++
T Consensus       153 q~d~~~fYQ~D~~D  166 (297)
T COG4785         153 QDDLLAFYQDDPND  166 (297)
T ss_pred             HHHHHHHHhcCCCC
Confidence            99888888888777

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.81  E-value=4.4e-08  Score=77.40  Aligned_cols=67  Identities=13%  Similarity=0.167  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 021175          165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFY----------PAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR  234 (316)
Q Consensus       165 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~  234 (316)
                      -++.|.+.++.....+|.+++.+++-|.++..+.++          ++|+.-|++|+.    ++|+...+++++|.+|..
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~----I~P~~hdAlw~lGnA~ts   81 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK----INPNKHDALWCLGNAYTS   81 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH----H-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHH
Confidence            467778888888888888888888888888766433          233333444444    355555555555555544


Q ss_pred             c
Q 021175          235 E  235 (316)
Q Consensus       235 ~  235 (316)
                      .
T Consensus        82 ~   82 (186)
T PF06552_consen   82 L   82 (186)
T ss_dssp             H
T ss_pred             H
Confidence            3

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.80  E-value=1.6e-07  Score=88.43  Aligned_cols=131  Identities=20%  Similarity=0.094  Sum_probs=100.3

Q ss_pred             cchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Q 021175          118 SENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRS--GDASATEYFELGAVML  195 (316)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~  195 (316)
                      .+...+.++++.+...+|+....+.....++..... +   ......+.+++.+..++++..  +|..+.++..+|..+.
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~-~---~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~  431 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHS-Q---QPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQAL  431 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh-c---CCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH
Confidence            345667778887777777776554443222211100 0   001234566777777777664  7778899999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVT  257 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  257 (316)
                      ..|++++|...+++|++    ++|+ ..+|..+|.++...|++++|++.|++|++++|.++.
T Consensus       432 ~~g~~~~A~~~l~rAl~----L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        432 VKGKTDEAYQAINKAID----LEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hcCCHHHHHHHHHHHHH----cCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            99999999999999999    6884 789999999999999999999999999999999875

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.80  E-value=1.8e-07  Score=74.13  Aligned_cols=117  Identities=16%  Similarity=0.147  Sum_probs=61.3

Q ss_pred             HHHHhhhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHHHc
Q 021175          159 QVLVRRELDLSAKELQEQVR-SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ--DLAQVYNALGVSYVRE  235 (316)
Q Consensus       159 ~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p--~~~~~~~~lg~~~~~~  235 (316)
                      .....|++.+|...|++++. +.-+++..+..+++..+..+++.+|...+++..+    .+|  ..+.....+|.++...
T Consensus        98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e----~~pa~r~pd~~Ll~aR~laa~  173 (251)
T COG4700          98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME----YNPAFRSPDGHLLFARTLAAQ  173 (251)
T ss_pred             HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh----cCCccCCCCchHHHHHHHHhc
Confidence            33455555555555555554 3344555555555555555555555555555555    233  2344445555555555


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175          236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE  280 (316)
Q Consensus       236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  280 (316)
                      |++++|...|+.++...|+ +++....+..+.++|+.++|...+.
T Consensus       174 g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~  217 (251)
T COG4700         174 GKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYV  217 (251)
T ss_pred             CCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHH
Confidence            5555555555555555553 3444445555555555554444333

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.79  E-value=1.1e-06  Score=73.72  Aligned_cols=149  Identities=18%  Similarity=0.184  Sum_probs=124.0

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE-  235 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~-  235 (316)
                      .++.|++++|++.|++.....|..   ..+...++.++++.+++++|+...++-+++.|. +|+...+++..|.+++.. 
T Consensus        44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-~~n~dY~~YlkgLs~~~~i  122 (254)
T COG4105          44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-HPNADYAYYLKGLSYFFQI  122 (254)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHhccC
Confidence            448999999999999999988854   679999999999999999999999999998774 788888999999998753 


Q ss_pred             -------CCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-
Q 021175          236 -------GKLDKGISQFETAVKLQPGYV-----------------TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK-  290 (316)
Q Consensus       236 -------g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-  290 (316)
                             .-..+|+..+++.++..|+..                 .--...|..|.+.|.+..|...++++++.-|+.. 
T Consensus       123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~  202 (254)
T COG4105         123 DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA  202 (254)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc
Confidence                   234678899999999999871                 1224678899999999999999999999877754 


Q ss_pred             --hHHHHHHHHHhhCCCCCCC
Q 021175          291 --VARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       291 --~a~~~l~~l~~~~~~~~~A  309 (316)
                        +++..+...+..+|..++|
T Consensus       203 ~~eaL~~l~eaY~~lgl~~~a  223 (254)
T COG4105         203 VREALARLEEAYYALGLTDEA  223 (254)
T ss_pred             hHHHHHHHHHHHHHhCChHHH
Confidence              5566667778888876654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.76  E-value=4e-07  Score=68.51  Aligned_cols=90  Identities=14%  Similarity=0.135  Sum_probs=77.5

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g  236 (316)
                      ....|+.++|+..|++++......   ..++.++|..+...|++++|+..+++++...| .++.+......++.++...|
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~L~~~g   89 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-DDELNAALRVFLALALYNLG   89 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHHCC
Confidence            347999999999999999976543   67999999999999999999999999999432 12337888888999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 021175          237 KLDKGISQFETAVK  250 (316)
Q Consensus       237 ~~~~A~~~~~~al~  250 (316)
                      ++++|++.+-+++.
T Consensus        90 r~~eAl~~~l~~la  103 (120)
T PF12688_consen   90 RPKEALEWLLEALA  103 (120)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988875

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=2.3e-07  Score=74.40  Aligned_cols=104  Identities=13%  Similarity=0.228  Sum_probs=92.4

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDAS-----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY  232 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~  232 (316)
                      +.++.+|+|++|...|+.++...|..     .-.+.|.|.+.++++.++.|++-..++++    ++|.+..+....+.+|
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie----l~pty~kAl~RRAeay  178 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE----LNPTYEKALERRAEAY  178 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh----cCchhHHHHHHHHHHH
Confidence            34458999999999999999999865     45788999999999999999999999999    7999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 021175          233 VREGKLDKGISQFETAVKLQPGYVTAWNNLGDA  265 (316)
Q Consensus       233 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  265 (316)
                      .++.+|++|++.|++.++++|...++.-....+
T Consensus       179 ek~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  179 EKMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            999999999999999999999876665544433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.74  E-value=1.9e-07  Score=81.78  Aligned_cols=144  Identities=17%  Similarity=0.164  Sum_probs=103.2

Q ss_pred             HhhhHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-Cc-cHHHHHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGD------ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD-DQ-DLAQVYNALGVSYV  233 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~p-~~~~~~~~lg~~~~  233 (316)
                      ..+++++|.+.|.++....-      .....+...+.++.+. ++++|+++|+++++.+... .| .-+.++.++|.+|.
T Consensus        47 ~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye  125 (282)
T PF14938_consen   47 LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE  125 (282)
T ss_dssp             HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC
T ss_pred             HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            67888888888888765322      2245677777777655 9999999999999975432 23 34778999999999


Q ss_pred             Hc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-------hHHHHHHHH
Q 021175          234 RE-GKLDKGISQFETAVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK-------VARPRRDAL  299 (316)
Q Consensus       234 ~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~~l~~l  299 (316)
                      .. |++++|+++|++|+++....      ..++..+|.++...|+|++|++.|++.....-++.       ........+
T Consensus       126 ~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~  205 (282)
T PF14938_consen  126 EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILC  205 (282)
T ss_dssp             CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence            99 99999999999999874321      46778999999999999999999999987543322       122334445


Q ss_pred             HhhCCCC
Q 021175          300 KDRVPLY  306 (316)
Q Consensus       300 ~~~~~~~  306 (316)
                      +...||.
T Consensus       206 ~L~~~D~  212 (282)
T PF14938_consen  206 HLAMGDY  212 (282)
T ss_dssp             HHHTT-H
T ss_pred             HHHcCCH
Confidence            5555554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.73  E-value=3.4e-07  Score=68.32  Aligned_cols=98  Identities=15%  Similarity=0.120  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHH
Q 021175          187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY----VTAWNNL  262 (316)
Q Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l  262 (316)
                      +-..|......|+.+.|++.|.+++.    +.|..+.+|+|.+.++.-+|+.++|++.+++|+++....    -.++...
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~----l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR  121 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALC----LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR  121 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHH----hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            44567778888999999999999999    688899999999999999999999999999999886543    3577888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175          263 GDAYEKKKDLKSALKAFEEVLLFDPN  288 (316)
Q Consensus       263 g~~~~~~g~~~~A~~~~~~al~~~p~  288 (316)
                      |.+|..+|+-+.|...|+.+.++...
T Consensus       122 g~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  122 GLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHhCchHHHHHhHHHHHHhCCH
Confidence            99999999999999999888877543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.72  E-value=4.2e-07  Score=69.71  Aligned_cols=100  Identities=15%  Similarity=0.187  Sum_probs=88.8

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 021175          157 IRQVLVRRELDLSAKELQEQVRSGDA---SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV  233 (316)
Q Consensus       157 ~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~  233 (316)
                      +.+.+..|+|++|++.++......|.   ...+...+|.+|+..+++++|+..+++-+++.|. +|+...+++..|.+++
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~-hp~vdYa~Y~~gL~~~   95 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT-HPNVDYAYYMRGLSYY   95 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCCccHHHHHHHHHHH
Confidence            34456899999999999999998885   4679999999999999999999999999997663 6777889999999999


Q ss_pred             HcCC---------------HHHHHHHHHHHHHhCCCcHH
Q 021175          234 REGK---------------LDKGISQFETAVKLQPGYVT  257 (316)
Q Consensus       234 ~~g~---------------~~~A~~~~~~al~~~p~~~~  257 (316)
                      .+.+               ..+|...|++.++..|++.-
T Consensus        96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence            9887               88999999999999999754

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.72  E-value=3.9e-07  Score=76.95  Aligned_cols=100  Identities=18%  Similarity=0.258  Sum_probs=92.1

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g  236 (316)
                      .+..|+|.+|+..|.+-++..|+.   +.+++=||.+++.+|+|++|...|..+++-+|+ .|.-+++++.+|.+..++|
T Consensus       151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~  229 (262)
T COG1729         151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLG  229 (262)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhc
Confidence            458999999999999999999975   789999999999999999999999999997774 7788999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHH
Q 021175          237 KLDKGISQFETAVKLQPGYVTAWN  260 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~~~~~~  260 (316)
                      +.++|-..|+++++..|+...+..
T Consensus       230 ~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         230 NTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHH
Confidence            999999999999999999876544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.71  E-value=1.6e-05  Score=63.26  Aligned_cols=141  Identities=13%  Similarity=0.105  Sum_probs=118.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Q 021175          165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQ  244 (316)
Q Consensus       165 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  244 (316)
                      |.+.......+.+++.|. ..-.+.+|+...+.|++.||..+|++++.-   +..+++.....++...+..+++.+|...
T Consensus        71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG---~fA~d~a~lLglA~Aqfa~~~~A~a~~t  146 (251)
T COG4700          71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSG---IFAHDAAMLLGLAQAQFAIQEFAAAQQT  146 (251)
T ss_pred             ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc---ccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence            445555555556666664 345789999999999999999999999983   4567889999999999999999999999


Q ss_pred             HHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175          245 FETAVKLQPG--YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP  310 (316)
Q Consensus       245 ~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~  310 (316)
                      +++..+.+|.  .++....+|.++..+|++.+|...|+.++...|+ +++....+....++|+.+++.
T Consensus       147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~  213 (251)
T COG4700         147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREAN  213 (251)
T ss_pred             HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHH
Confidence            9999999986  4788899999999999999999999999999886 567777788888888776553

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.68  E-value=4e-07  Score=77.34  Aligned_cols=143  Identities=14%  Similarity=0.053  Sum_probs=100.7

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ...+|+.+++.+..-.+.+|..-..+..+|.+|+...+|..|.++|++.-.    +.|.........+..+++.+.+..|
T Consensus        22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q----l~P~~~qYrlY~AQSLY~A~i~ADA   97 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ----LHPELEQYRLYQAQSLYKACIYADA   97 (459)
T ss_pred             HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hChHHHHHHHHHHHHHHHhcccHHH
Confidence            667778888888887888887777788888888888888888888888777    5777777776677777777777666


Q ss_pred             HHHHHHHH----------------HhC--------------C--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175          242 ISQFETAV----------------KLQ--------------P--GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       242 ~~~~~~al----------------~~~--------------p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  289 (316)
                      +.......                ...              |  ++++...+.|.+.++.|++++|++-|+.+++...-+
T Consensus        98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq  177 (459)
T KOG4340|consen   98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ  177 (459)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence            65532221                111              2  335566777777777777777777777777777766


Q ss_pred             hhHHHHHHHHHhhCCCCCC
Q 021175          290 KVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       290 ~~a~~~l~~l~~~~~~~~~  308 (316)
                      +..-++++....+.+++.+
T Consensus       178 pllAYniALaHy~~~qyas  196 (459)
T KOG4340|consen  178 PLLAYNLALAHYSSRQYAS  196 (459)
T ss_pred             chhHHHHHHHHHhhhhHHH
Confidence            7777777766666666543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=4.8e-07  Score=78.55  Aligned_cols=142  Identities=13%  Similarity=0.045  Sum_probs=118.4

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc----------CCC------------Cc
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKW----------DGD------------DQ  219 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------~~~------------~p  219 (316)
                      ..|+|++|...|.-+...+...++.+.+++.+++..|.|.+|...-.++-+.-          -++            -.
T Consensus        69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq  148 (557)
T KOG3785|consen   69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ  148 (557)
T ss_pred             hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence            78999999999999999888889999999999999999999998887765410          000            01


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       220 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      +..+-...|+.+++..-.|++|++.|++.+.-+|+....-.+++.||.++.-++-+.+.+.--++..|+++.+....+..
T Consensus       149 D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn  228 (557)
T KOG3785|consen  149 DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACN  228 (557)
T ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            12234455677778888999999999999999999999999999999999999999999999999999999998877665


Q ss_pred             HhhC
Q 021175          300 KDRV  303 (316)
Q Consensus       300 ~~~~  303 (316)
                      ..++
T Consensus       229 ~fRl  232 (557)
T KOG3785|consen  229 LFRL  232 (557)
T ss_pred             Hhhh
Confidence            5443

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.66  E-value=6e-06  Score=84.08  Aligned_cols=146  Identities=11%  Similarity=0.041  Sum_probs=87.6

Q ss_pred             HhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          162 VRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      +.|++++|.+.|++..+.+- .+...|..+...+.+.|++++|.+.+++..+......|+ ...|..+-..|.+.|++++
T Consensus       519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~lde  597 (1060)
T PLN03218        519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDR  597 (1060)
T ss_pred             HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHH
Confidence            56666666666666654331 235556666666666666666666666665421112333 3455566666667777777


Q ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHhhCCCCCCC
Q 021175          241 GISQFETAVKLQ-PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF--DPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       241 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |.+.|++..+.+ +.+...|..+...|.+.|++++|.+.|++..+.  .|+ ...+..+...+.+.|++++|
T Consensus       598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA  668 (1060)
T PLN03218        598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKA  668 (1060)
T ss_pred             HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHH
Confidence            777777666655 345566666667777777777777777766654  343 44555666666666666544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.65  E-value=6.4e-06  Score=72.62  Aligned_cols=152  Identities=16%  Similarity=0.097  Sum_probs=122.4

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC----------------------
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD----------------------  215 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------------  215 (316)
                      +..+.+|+++.|.....++.+..|.++.+......+|...|+|++......+..+.--                      
T Consensus       161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~  240 (400)
T COG3071         161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR  240 (400)
T ss_pred             HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence            3355899999999999999999999999999999999999999999888877655210                      


Q ss_pred             ----------------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------
Q 021175          216 ----------------GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL----------------------------  251 (316)
Q Consensus       216 ----------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------------------  251 (316)
                                      ..-..++..-..++.-+...|++++|.+..+++++.                            
T Consensus       241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~  320 (400)
T COG3071         241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKW  320 (400)
T ss_pred             ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHH
Confidence                            001123445555666677889999998887777754                            


Q ss_pred             ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175          252 ---QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP  310 (316)
Q Consensus       252 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~  310 (316)
                         .|+++..+..||..+.+.+.+.+|..+++.+++..|+ ...+..++.+..++|+.++|+
T Consensus       321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAE  381 (400)
T ss_pred             HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHH
Confidence               3667889999999999999999999999999998875 556778899999999887664

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.64  E-value=6.2e-07  Score=83.21  Aligned_cols=121  Identities=17%  Similarity=0.180  Sum_probs=116.1

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|+-++|....+.+++.++....+|..+|.++...++|++|+++|+.|+.    ..|++...+..++....++++++..
T Consensus        53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~----~~~dN~qilrDlslLQ~QmRd~~~~  128 (700)
T KOG1156|consen   53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK----IEKDNLQILRDLSLLQIQMRDYEGY  128 (700)
T ss_pred             cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHhhhhH
Confidence            678999999999999999999999999999999999999999999999999    7999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD  286 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  286 (316)
                      .+.-.+.+++.|..-..|...+..+.-.|++..|....+...+..
T Consensus       129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999888877665

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.64  E-value=3e-06  Score=63.33  Aligned_cols=94  Identities=18%  Similarity=0.169  Sum_probs=84.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|+.+.|++.|.+++...|..+.+|+|.+..+.-+|+.++|++-+++++++...-......++...|.+|..+|+-+.|
T Consensus        55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A  134 (175)
T KOG4555|consen   55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA  134 (175)
T ss_pred             hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence            78999999999999999999999999999999999999999999999999974432334567889999999999999999


Q ss_pred             HHHHHHHHHhCCCc
Q 021175          242 ISQFETAVKLQPGY  255 (316)
Q Consensus       242 ~~~~~~al~~~p~~  255 (316)
                      ...|+.|-++....
T Consensus       135 R~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  135 RADFEAAAQLGSKF  148 (175)
T ss_pred             HHhHHHHHHhCCHH
Confidence            99999998876654

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.63  E-value=7e-06  Score=83.59  Aligned_cols=144  Identities=16%  Similarity=0.079  Sum_probs=93.4

Q ss_pred             HhhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          162 VRRELDLSAKELQEQVRSG-DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      +.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|.+.|++..+.  ...|+ ...|..+...|.+.|++++
T Consensus       591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~--Gv~PD-~~TynsLI~a~~k~G~~ee  667 (1060)
T PLN03218        591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK--GVKPD-EVFFSALVDVAGHAGDLDK  667 (1060)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC-HHHHHHHHHHHHhCCCHHH
Confidence            5666666666666666654 345566666666666667777777776666652  01333 4566666677777777777


Q ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHhhCCCCCCC
Q 021175          241 GISQFETAVKLQ-PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF--DPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       241 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |.+.+++..+.. +-+...+..+..+|.+.|+.++|.+.|++..+.  .| +...|..+...+.+.|+.++|
T Consensus       668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeA  738 (1060)
T PLN03218        668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKA  738 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence            777777776654 234667777777777777777777777776543  34 345667777777777776655

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.63  E-value=1.4e-06  Score=86.14  Aligned_cols=144  Identities=15%  Similarity=0.098  Sum_probs=113.6

Q ss_pred             HhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          162 VRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ..|+.++|++.|++..+.+. .+...+..+-..+.+.|+.++|.++|+...+... ..| +...|..+...+.+.|+.++
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g-~~p-~~~~y~~li~~l~r~G~~~e  480 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR-IKP-RAMHYACMIELLGREGLLDE  480 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC-CCC-CccchHhHHHHHHhcCCHHH
Confidence            77888888888888776432 3456677777888888888888888888776211 223 34567778888999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |.+.+++. ...| +...|..+...+...|+.+.|...+++.++++|++...+..+..++.+.|++++|
T Consensus       481 A~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A  547 (697)
T PLN03081        481 AYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA  547 (697)
T ss_pred             HHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence            99988764 2233 4567888888999999999999999999999999999999999999999999766

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.61  E-value=4.2e-07  Score=71.92  Aligned_cols=97  Identities=26%  Similarity=0.312  Sum_probs=73.0

Q ss_pred             ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 021175          199 FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE----------GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK  268 (316)
Q Consensus       199 ~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  268 (316)
                      -|+.|.+.++....    .+|.+++.+++-|.++..+          .-+++|+.-|++|+.++|+..++++++|.+|..
T Consensus         6 ~FE~ark~aea~y~----~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts   81 (186)
T PF06552_consen    6 FFEHARKKAEAAYA----KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS   81 (186)
T ss_dssp             HHHHHHHHHHHHHH----H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            03567788888777    5888899888888777644          569999999999999999999999999998887


Q ss_pred             cCC-----------HHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          269 KKD-----------LKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       269 ~g~-----------~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      ++.           +++|..+|+++.+.+|++...+..|...
T Consensus        82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            654           6788999999999999988777777543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.61  E-value=2.5e-07  Score=79.91  Aligned_cols=101  Identities=12%  Similarity=0.057  Sum_probs=93.5

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175          157 IRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       157 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g  236 (316)
                      ++.++.+|.|++|+.+|.+++..+|.++..+.|.+.+|++.++|..|+.-...|+.    ++.....+|...|.+...+|
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia----Ld~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA----LDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH----hhHHHHHHHHHHHHHHHHHh
Confidence            44566999999999999999999999999999999999999999999999999999    68899999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHH
Q 021175          237 KLDKGISQFETAVKLQPGYVTAWNN  261 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~~~~~~~  261 (316)
                      +..+|.+.++.++++.|++.+..-.
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~  204 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKS  204 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHH
Confidence            9999999999999999997554433

>PLN03077 Protein ECB2; Provisional

Probab=98.58  E-value=2.7e-06  Score=86.00  Aligned_cols=145  Identities=16%  Similarity=0.195  Sum_probs=116.8

Q ss_pred             HhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          162 VRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ..|+.++|++.|++..+.+. .+...+..+-..+.+.|+.++|.++|+...+... ..|+ ...|..+...+.+.|+.++
T Consensus       566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g-i~P~-~~~y~~lv~~l~r~G~~~e  643 (857)
T PLN03077        566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS-ITPN-LKHYACVVDLLGRAGKLTE  643 (857)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC-CCCc-hHHHHHHHHHHHhCCCHHH
Confidence            78899999999998877432 2344566666778889999999999998885322 3443 4678889999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP  310 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~  310 (316)
                      |.+.+++. ...|+ +..|..+-..+...|+.+.+....++.++++|++...+..+..++...|+|++|.
T Consensus       644 A~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~  711 (857)
T PLN03077        644 AYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA  711 (857)
T ss_pred             HHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence            99999875 34554 5667777667788899999999999999999999999999999999999998763

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.5e-07  Score=77.42  Aligned_cols=91  Identities=20%  Similarity=0.212  Sum_probs=61.0

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 021175          190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK  269 (316)
Q Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  269 (316)
                      -|+.++...+|+.|+.+|.+++.    .+|..+.+|.|.+.+|++.++++...+..++|++++|+....++.+|.+....
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~----~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s   91 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAIC----INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS   91 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHh----cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence            34455555666666666666666    56666666666666666666676666666677777776666666677666666


Q ss_pred             CCHHHHHHHHHHHHh
Q 021175          270 KDLKSALKAFEEVLL  284 (316)
Q Consensus       270 g~~~~A~~~~~~al~  284 (316)
                      ..+++|+..++++..
T Consensus        92 ~~~~eaI~~Lqra~s  106 (284)
T KOG4642|consen   92 KGYDEAIKVLQRAYS  106 (284)
T ss_pred             ccccHHHHHHHHHHH
Confidence            666666666666643

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.55  E-value=5e-07  Score=73.39  Aligned_cols=106  Identities=25%  Similarity=0.310  Sum_probs=100.0

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL  262 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  262 (316)
                      .+..++..|..|-..|-++-|.--|.+++.    +.|+.+.+++.+|..+...|+|+.|.+.|...++++|.+.-++.|.
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLa----i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR  139 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALA----IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  139 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhh----cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence            456788889999999999999999999999    7999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175          263 GDAYEKKKDLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       263 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a  292 (316)
                      |..++.-|+++-|.+.+.+.-+-+|++|--
T Consensus       140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR  169 (297)
T COG4785         140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFR  169 (297)
T ss_pred             ceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence            999999999999999999999999998743

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.55  E-value=4.4e-06  Score=82.54  Aligned_cols=141  Identities=10%  Similarity=-0.003  Sum_probs=105.5

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      +.+.|++++|.+.|++.   .+.+..+|..+...|.+.|++++|.+.|++..+..  ..| +...+..+..++.+.|+++
T Consensus       269 y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g--~~p-d~~t~~~ll~a~~~~g~~~  342 (697)
T PLN03081        269 YSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG--VSI-DQFTFSIMIRIFSRLALLE  342 (697)
T ss_pred             HHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCC-CHHHHHHHHHHHHhccchH
Confidence            44788899999988865   34567789999999999999999999998887621  233 3457777888888888888


Q ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          240 KGISQFETAVKLQ-PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       240 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +|.+.+++.++.. +.+...+..+...|.+.|+.++|.+.|++..+   .+...|..+...+.+.|+.++|
T Consensus       343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A  410 (697)
T PLN03081        343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKA  410 (697)
T ss_pred             HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHH
Confidence            8888888888765 45667777788888888888888888877643   2456677777777777766554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.53  E-value=6.9e-06  Score=77.23  Aligned_cols=127  Identities=13%  Similarity=0.111  Sum_probs=109.2

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 021175          155 FVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR  234 (316)
Q Consensus       155 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~  234 (316)
                      +..+-+...|++++|+++.+++++..|..++.++..|.++.+.|++++|.+..+.|-.    +++.+-..-...+..+.+
T Consensus       199 ~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~----LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  199 FLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE----LDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----CChhhHHHHHHHHHHHHH
Confidence            3344455899999999999999999999999999999999999999999999999999    798888888888999999


Q ss_pred             cCCHHHHHHHHHHHHHhCC--Cc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          235 EGKLDKGISQFETAVKLQP--GY-------VTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       235 ~g~~~~A~~~~~~al~~~p--~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      .|+.++|.+.+..-.+.+-  ..       ......-|.+|.+.|++..|++.|..+.+.
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999988766552  11       223346789999999999999999888765

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.52  E-value=1.1e-06  Score=77.63  Aligned_cols=150  Identities=15%  Similarity=0.080  Sum_probs=118.4

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--CccHHHHHHHHH
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDAS------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD--DQDLAQVYNALG  229 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~p~~~~~~~~lg  229 (316)
                      +.++-.|+++.|+..-+.-+.+....      -.++.|+|+++.-.|+++.|+++|++.+.+.-++  ....+...|.||
T Consensus       203 NTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLg  282 (639)
T KOG1130|consen  203 NTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLG  282 (639)
T ss_pred             ceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhh
Confidence            44457899999999888877765432      3589999999999999999999999988754332  234567788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC-ChhHHHHHH
Q 021175          230 VSYVREGKLDKGISQFETAVKLQP------GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD-----PN-NKVARPRRD  297 (316)
Q Consensus       230 ~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~a~~~l~  297 (316)
                      ..|.-.+++++||.++++-+.+..      ....++..||..|-..|..++|+.+.++.+++.     |. ...+..++.
T Consensus       283 Ntytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nls  362 (639)
T KOG1130|consen  283 NTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLS  362 (639)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhH
Confidence            999999999999999999887653      336788999999999999999999888877653     22 344667777


Q ss_pred             HHHhhCCCCC
Q 021175          298 ALKDRVPLYK  307 (316)
Q Consensus       298 ~l~~~~~~~~  307 (316)
                      .+...+|.-+
T Consensus       363 dl~~~lG~~d  372 (639)
T KOG1130|consen  363 DLILELGQED  372 (639)
T ss_pred             HHHHHhCCCc
Confidence            7777777554

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=2.7e-06  Score=70.37  Aligned_cols=111  Identities=14%  Similarity=0.147  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCc----------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG----DDQ----------DLAQVYNALGVSYVREGKLDKGISQFETAV  249 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  249 (316)
                      ..+...-|+-++..|+|.+|...|+.|+.....    -.|          .....+.|.+.|+...|+|-++++...+.+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            457888999999999999999999999875421    122          345678899999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175          250 KLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP  294 (316)
Q Consensus       250 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  294 (316)
                      +.+|++..+++..|.++...=+.++|...+.++++++|.-..+..
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence            999999999999999999999999999999999999998665543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.46  E-value=2.9e-05  Score=63.87  Aligned_cols=139  Identities=24%  Similarity=0.245  Sum_probs=111.2

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHHHcCC
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGA-VMLRRKFYPAATKYLLQAIEKWDGDDQ---DLAQVYNALGVSYVREGK  237 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~p---~~~~~~~~lg~~~~~~g~  237 (316)
                      ..+++.++++.+.++....+.........+. ++...|++++|...+++++.    ..|   .........+..+...++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  182 (291)
T COG0457         107 ALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE----LDPELNELAEALLALGALLEALGR  182 (291)
T ss_pred             HHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCccchHHHHHHhhhHHHHhcC
Confidence            6667888889999888887776665666666 88899999999999999977    455   566677777777888899


Q ss_pred             HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          238 LDKGISQFETAVKLQPG-YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      +++|+..+.+++...+. ....+..++..+...+++++|...+.+++...|+........+..+...+
T Consensus       183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (291)
T COG0457         183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG  250 (291)
T ss_pred             HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence            99999999999999888 68888999999999999999999999999988875555555555555433

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.46  E-value=2.7e-07  Score=83.18  Aligned_cols=120  Identities=21%  Similarity=0.273  Sum_probs=97.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175          188 FELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE  267 (316)
Q Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  267 (316)
                      -+-++..+..++|+.|+..|.|+++    ++|+.+..+-+.+.++.+.+++..|+..+.+|++.+|....+|+..|.+..
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~----ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIE----LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHh----cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            3455666777888888888888888    688888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC--CCCCCC
Q 021175          268 KKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL--YKGVPV  311 (316)
Q Consensus       268 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~--~~~A~~  311 (316)
                      ..+++.+|...|++...+.|+++.+...+..+......  ++.+..
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~  129 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAIL  129 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhccc
Confidence            88888888888888888888888888888777665554  344433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=2.6e-05  Score=72.08  Aligned_cols=130  Identities=13%  Similarity=0.126  Sum_probs=105.8

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------------------------
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD------------------------  215 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------------------  215 (316)
                      .++.+..++|+..++   ..++.+.......|.++++.|+|++|.+.|+..++...                        
T Consensus        89 ~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q  165 (652)
T KOG2376|consen   89 EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ  165 (652)
T ss_pred             HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence            347889999999888   56666777888999999999999999999998865210                        


Q ss_pred             --CCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCc-------HHHHHHHHHHHHHcCCHHHHHH
Q 021175          216 --GDDQ-DLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--------PGY-------VTAWNNLGDAYEKKKDLKSALK  277 (316)
Q Consensus       216 --~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~-------~~~~~~lg~~~~~~g~~~~A~~  277 (316)
                        ...| ++.+.++|.+.++...|+|.+|++.+++|+++.        .+.       ..+...++.++..+|+.++|..
T Consensus       166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~  245 (652)
T KOG2376|consen  166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS  245 (652)
T ss_pred             hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence              0233 367789999999999999999999999995431        111       3577889999999999999999


Q ss_pred             HHHHHHhcCCCChhH
Q 021175          278 AFEEVLLFDPNNKVA  292 (316)
Q Consensus       278 ~~~~al~~~p~~~~a  292 (316)
                      .|...++.+|.+...
T Consensus       246 iy~~~i~~~~~D~~~  260 (652)
T KOG2376|consen  246 IYVDIIKRNPADEPS  260 (652)
T ss_pred             HHHHHHHhcCCCchH
Confidence            999999999877643

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.45  E-value=2.2e-07  Score=82.01  Aligned_cols=146  Identities=14%  Similarity=0.127  Sum_probs=112.1

Q ss_pred             hhHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHHHc
Q 021175          164 RELDLSAKELQEQVRSGDA------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD--DQDLAQVYNALGVSYVRE  235 (316)
Q Consensus       164 ~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~p~~~~~~~~lg~~~~~~  235 (316)
                      ..++.|.+.|++-++....      ...++-++|+.|+-.|+|++|+.+-+.=+++..+.  ....-.++.|+|.++.-+
T Consensus       169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl  248 (639)
T KOG1130|consen  169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL  248 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence            3456677777776664332      34578899999999999999999988777754331  223456899999999999


Q ss_pred             CCHHHHHHHHHHHHHhC----CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHhhC
Q 021175          236 GKLDKGISQFETAVKLQ----PG--YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP------NNKVARPRRDALKDRV  303 (316)
Q Consensus       236 g~~~~A~~~~~~al~~~----p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~l~~l~~~~  303 (316)
                      |+++.|+++|++++.+.    ..  .++..|.||..|.-..++++|+.+.++-+.+..      ....+.+.++..+..+
T Consensus       249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al  328 (639)
T KOG1130|consen  249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL  328 (639)
T ss_pred             cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence            99999999999987653    22  367789999999999999999999998887643      3455677788888777


Q ss_pred             CCCCCC
Q 021175          304 PLYKGV  309 (316)
Q Consensus       304 ~~~~~A  309 (316)
                      |..++|
T Consensus       329 g~h~kA  334 (639)
T KOG1130|consen  329 GEHRKA  334 (639)
T ss_pred             hhHHHH
Confidence            766544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=8e-05  Score=62.54  Aligned_cols=128  Identities=19%  Similarity=0.165  Sum_probs=112.7

Q ss_pred             HhhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHcCCH
Q 021175          162 VRRELDLSAKELQEQVRSG-DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD--QDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--p~~~~~~~~lg~~~~~~g~~  238 (316)
                      -.++|.-....+.+.++.+ |.++.....+|.+.++.||-+.|..++++.-+....++  .....+..+.+.+|.-.+++
T Consensus       189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~  268 (366)
T KOG2796|consen  189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF  268 (366)
T ss_pred             cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch
Confidence            5678888899999999988 57888999999999999999999999997665332222  34566778889999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  289 (316)
                      .+|...+.+.+..||.++.+-++.+.|....|+..+|++.++.+++..|..
T Consensus       269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            999999999999999999999999999999999999999999999999974

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.42  E-value=6.8e-07  Score=54.71  Aligned_cols=41  Identities=29%  Similarity=0.477  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 021175          224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGD  264 (316)
Q Consensus       224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  264 (316)
                      ++..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            45555555666666666666666666666666555555543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.38  E-value=0.00013  Score=64.56  Aligned_cols=123  Identities=13%  Similarity=0.120  Sum_probs=109.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|+|.+|++...+.-+-.+...-++..-+.+..++||++.|-.++.++-+.   .+.+.-......+......|+++.|
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~~~~l~v~ltrarlll~~~d~~aA  172 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AGDDTLAVELTRARLLLNRRDYPAA  172 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHhCCCchhH
Confidence            7899999999999988888887888888889999999999999999999983   1234556777889999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP  287 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  287 (316)
                      ..-..++++..|.++.+....-.+|...|++++......+.-+..-
T Consensus       173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~  218 (400)
T COG3071         173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL  218 (400)
T ss_pred             HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999988887766543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=1.1e-05  Score=74.41  Aligned_cols=124  Identities=10%  Similarity=0.038  Sum_probs=102.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      .++++++|.+...+.+...|++.++....-.+..+.++|++|....++-..     ...+....+..+.|.+++++.++|
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-----~~~~~~~~fEKAYc~Yrlnk~Dea   98 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-----LLVINSFFFEKAYCEYRLNKLDEA   98 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-----hhhcchhhHHHHHHHHHcccHHHH
Confidence            789999999999999999999999999999999999999999854443322     111222226889999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR  293 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  293 (316)
                      ++.++   -.++.+.......|++++++|+|++|.+.|+..++-+.++.+..
T Consensus        99 lk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~  147 (652)
T KOG2376|consen   99 LKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE  147 (652)
T ss_pred             HHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence            99998   55677777888999999999999999999999987766554443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=3.7e-06  Score=73.16  Aligned_cols=143  Identities=14%  Similarity=0.084  Sum_probs=111.3

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASA-TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      +.+.||..|+..++-....+.+.. +.-.-+|.+++..|+|++|...|.-+.+    .+.-+++.+.+|+.+++..|.|.
T Consensus        33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~~~el~vnLAcc~FyLg~Y~  108 (557)
T KOG3785|consen   33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDAPAELGVNLACCKFYLGQYI  108 (557)
T ss_pred             HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCCCcccchhHHHHHHHHHHHH
Confidence            368899999999988776665443 5566688999999999999999999988    35556889999999999999999


Q ss_pred             HHHHHHHHHHH--------------hCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 021175          240 KGISQFETAVK--------------LQPG------------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR  293 (316)
Q Consensus       240 ~A~~~~~~al~--------------~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  293 (316)
                      +|...-.++-+              ++..            ..+-...|+.+++..-.|++|++.|++++.-+|+....-
T Consensus       109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN  188 (557)
T KOG3785|consen  109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN  188 (557)
T ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence            99987655421              2211            122334566677777789999999999999999988887


Q ss_pred             HHHHHHHhhCCCCC
Q 021175          294 PRRDALKDRVPLYK  307 (316)
Q Consensus       294 ~~l~~l~~~~~~~~  307 (316)
                      ..++.++.++.-++
T Consensus       189 Vy~ALCyyKlDYyd  202 (557)
T KOG3785|consen  189 VYMALCYYKLDYYD  202 (557)
T ss_pred             HHHHHHHHhcchhh
Confidence            78888887776553

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.36  E-value=3.8e-05  Score=78.18  Aligned_cols=149  Identities=10%  Similarity=-0.089  Sum_probs=115.1

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDAS-----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD--LAQVYNALGVSYV  233 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~--~~~~~~~lg~~~~  233 (316)
                      ...|++++|...++++++..+..     ..+...+|.++...|++++|...++++++......+.  ...++.++|.++.
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~  542 (903)
T PRK04841        463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF  542 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            47899999999999998855432     2466788999999999999999999999864432222  2456788999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ChhHHHHHHHHH
Q 021175          234 REGKLDKGISQFETAVKLQPG--------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN-----NKVARPRRDALK  300 (316)
Q Consensus       234 ~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~l~~l~  300 (316)
                      ..|++++|.+.++++++....        ....+..+|.++...|++++|...+++++.....     ....+..++.+.
T Consensus       543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  622 (903)
T PRK04841        543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS  622 (903)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence            999999999999999986321        2344667899999999999999999999876332     234455677788


Q ss_pred             hhCCCCCCC
Q 021175          301 DRVPLYKGV  309 (316)
Q Consensus       301 ~~~~~~~~A  309 (316)
                      ...|++++|
T Consensus       623 ~~~G~~~~A  631 (903)
T PRK04841        623 LARGDLDNA  631 (903)
T ss_pred             HHcCCHHHH
Confidence            888877654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.36  E-value=3.9e-05  Score=63.04  Aligned_cols=143  Identities=21%  Similarity=0.253  Sum_probs=122.6

Q ss_pred             HHhhhHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHH-HHHHcCC
Q 021175          161 LVRRELDLSAKELQEQVR--SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGV-SYVREGK  237 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~-~~~~~g~  237 (316)
                      ...+++..+...+.....  ..+.....+...+..+...++++++++.+.+++.    ..+.........+. ++...|+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  145 (291)
T COG0457          70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA----LDPDPDLAEALLALGALYELGD  145 (291)
T ss_pred             HHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----CCCCcchHHHHHHHHHHHHcCC
Confidence            377888899999998887  7888899999999999999999999999999998    45555455555555 8999999


Q ss_pred             HHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHhhCCCCC
Q 021175          238 LDKGISQFETAVKLQP---GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN-NKVARPRRDALKDRVPLYK  307 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l~~l~~~~~~~~  307 (316)
                      +++|...+++++..+|   .........+..+...+++++|+..+.+++...+. .......++..+...++++
T Consensus       146 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (291)
T COG0457         146 YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE  219 (291)
T ss_pred             HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence            9999999999999877   45677778888889999999999999999999999 6888888888887776543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.35  E-value=9.4e-07  Score=54.07  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175          256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA  298 (316)
Q Consensus       256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  298 (316)
                      +.++..+|.+|..+|++++|++.|+++++.+|++++++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3578999999999999999999999999999999999999875

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.32  E-value=6.7e-07  Score=51.30  Aligned_cols=32  Identities=31%  Similarity=0.641  Sum_probs=24.4

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 021175          245 FETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL  276 (316)
Q Consensus       245 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  276 (316)
                      |++|++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            67777777777777777777777777777775

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.29  E-value=3.4e-05  Score=72.28  Aligned_cols=126  Identities=16%  Similarity=-0.004  Sum_probs=105.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ...+.+.+.+.+++..+..|+.+-..+..|.++...|+.++|++.|++++..-.+..+-..-+++.+|.++..+++|++|
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            35677899999999999999999999999999999999999999999988622212334456788999999999999999


Q ss_pred             HHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCC
Q 021175          242 ISQFETAVKLQPGY-VTAWNNLGDAYEKKKDL-------KSALKAFEEVLLFDP  287 (316)
Q Consensus       242 ~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~p  287 (316)
                      .+++.+..+.+.-. +-..|..|.|+...|+.       ++|.+.++++-.+..
T Consensus       325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            99999999976543 44556778899999999       888888888776543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=9.5e-06  Score=69.99  Aligned_cols=105  Identities=21%  Similarity=0.241  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ-DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL  262 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  262 (316)
                      +.-+-.-|+-|++.++|..|+..|.++++.--. +| -++..|.|.+.+.+..|+|..|+....+++.++|.+..+++.-
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~-D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCA-DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCC-CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            556777899999999999999999999985322 34 4678899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175          263 GDAYEKKKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       263 g~~~~~~g~~~~A~~~~~~al~~~p~~  289 (316)
                      +.|+..+.++++|..+.++.++++.+.
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            999999999999999888888776543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=3.8e-06  Score=69.22  Aligned_cols=87  Identities=16%  Similarity=0.194  Sum_probs=82.9

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      +....|+.|+..|.+++.++|..+..+.+.+.++++.++++.+...-+++++    +.|+....++.+|........|++
T Consensus        21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq----l~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ----LDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh----cChHHHHHHHHHHHHHHhhccccH
Confidence            3567899999999999999999999999999999999999999999999999    799999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 021175          241 GISQFETAVKL  251 (316)
Q Consensus       241 A~~~~~~al~~  251 (316)
                      |+..+++|..+
T Consensus        97 aI~~Lqra~sl  107 (284)
T KOG4642|consen   97 AIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHH
Confidence            99999999765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.24  E-value=2.8e-06  Score=48.75  Aligned_cols=32  Identities=25%  Similarity=0.640  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 021175          223 QVYNALGVSYVREGKLDKGISQFETAVKLQPG  254 (316)
Q Consensus       223 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  254 (316)
                      .+|+++|.++..+|++++|++.|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03077 Protein ECB2; Provisional

Probab=98.22  E-value=6.7e-05  Score=76.01  Aligned_cols=118  Identities=11%  Similarity=0.056  Sum_probs=100.8

Q ss_pred             HhhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          162 VRRELDLSAKELQEQVRSGD--ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      ..|+++++.+.|++..+..+  .+...|..+...+.+.|++++|.+.+++. .    ..|+ +..|..+-..+...|+.+
T Consensus       601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~----~~pd-~~~~~aLl~ac~~~~~~e  674 (857)
T PLN03077        601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-P----ITPD-PAVWGALLNACRIHRHVE  674 (857)
T ss_pred             hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-C----CCCC-HHHHHHHHHHHHHcCChH
Confidence            78999999999999885433  34578999999999999999999998875 2    3555 556666666778899999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      .|....++.++++|++...|..++.+|...|++++|.+..+...+.
T Consensus       675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN  720 (857)
T ss_pred             HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999998877643

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.22  E-value=8e-05  Score=75.89  Aligned_cols=127  Identities=10%  Similarity=0.063  Sum_probs=102.1

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC----ccHHHHHHHHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDA------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD----QDLAQVYNALGV  230 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----p~~~~~~~~lg~  230 (316)
                      ...|++++|...+++++.....      ...++.++|.++...|++++|..+++++++......    +.....+..+|.
T Consensus       502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  581 (903)
T PRK04841        502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ  581 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            4799999999999999875332      134677899999999999999999999998644311    223445678899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175          231 SYVREGKLDKGISQFETAVKLQPG-----YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP  287 (316)
Q Consensus       231 ~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  287 (316)
                      ++...|++++|.+.+++++.....     ...++..+|.++...|++++|...++++..+.+
T Consensus       582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999886432     355677799999999999999999999977643

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.21  E-value=8e-05  Score=67.90  Aligned_cols=140  Identities=17%  Similarity=0.154  Sum_probs=107.5

Q ss_pred             HHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----------CCc-------c-
Q 021175          159 QVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG----------DDQ-------D-  220 (316)
Q Consensus       159 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------~~p-------~-  220 (316)
                      +..+..+.+.-++..++|++++|+.+++|..|+.-  ......+|+++|+++++..+.          ..+       . 
T Consensus       177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rd  254 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRD  254 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccc
Confidence            34478889999999999999999999999988763  234467888888888874321          000       0 


Q ss_pred             ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChhHHH
Q 021175          221 ---LAQVYNALGVSYVREGKLDKGISQFETAVKLQPG--YVTAWNNLGDAYEKKKDLKSALKAFEEVLLF-DPNNKVARP  294 (316)
Q Consensus       221 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~  294 (316)
                         ...+...+|.+..+.|+.+||++.+++.++.+|.  +..++.+|-.++..++++.++...+.+-=++ -|+.+...+
T Consensus       255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~Y  334 (539)
T PF04184_consen  255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICY  334 (539)
T ss_pred             cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHH
Confidence               1345577999999999999999999999998875  4679999999999999999999988886433 255555555


Q ss_pred             HHHHHH
Q 021175          295 RRDALK  300 (316)
Q Consensus       295 ~l~~l~  300 (316)
                      .-+.+.
T Consensus       335 TaALLk  340 (539)
T PF04184_consen  335 TAALLK  340 (539)
T ss_pred             HHHHHH
Confidence            545444

The molecular function of this protein is uncertain.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.21  E-value=0.00023  Score=57.26  Aligned_cols=115  Identities=19%  Similarity=0.161  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH----HHHHHHHHHHHHHcCCHHH
Q 021175          168 LSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL----AQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       168 ~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~----~~~~~~lg~~~~~~g~~~~  240 (316)
                      +.+...++....+|..   ..+-..++..+...|++++|+..++.++.     .|.+    +-+-.+|+.+...+|++|+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~De~lk~l~~lRLArvq~q~~k~D~  144 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA-----QTKDENLKALAALRLARVQLQQKKADA  144 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc-----cchhHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4445555555566544   33566788889999999999999999997     3433    4466789999999999999


Q ss_pred             HHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175          241 GISQFETAVKLQPGY-VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       241 A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  289 (316)
                      |...+.....  ++. +..-...|.++...|+.++|+..|+++++.+++.
T Consensus       145 AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         145 ALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            9998865432  222 2334567999999999999999999999987543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=2.8e-05  Score=66.35  Aligned_cols=124  Identities=16%  Similarity=0.140  Sum_probs=104.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------hc-----------
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIE----------------KW-----------  214 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------------~~-----------  214 (316)
                      ...++..|.++|++.-...|.........+..+++.+.+.+|+........                ..           
T Consensus        56 ~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv  135 (459)
T KOG4340|consen   56 RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLV  135 (459)
T ss_pred             HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence            778999999999999999999888888888888888888888766543222                11           


Q ss_pred             CCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          215 DGD-DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       215 ~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      .+. ..+.+....+.|.+.++.|++++|++-|+.|++.....+-.-++++.++++.|+++.|+++..+.++.
T Consensus       136 eQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  136 EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             HhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            011 23677888999999999999999999999999999999999999999999999999999887776654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.18  E-value=7e-05  Score=62.94  Aligned_cols=109  Identities=22%  Similarity=0.294  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HH
Q 021175          182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV---TA  258 (316)
Q Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~  258 (316)
                      ..+..+++-|...++.|+|++|++.|++.....| ..|....+...++.++++.+++++|+...++-+++.|+++   -+
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            3467899999999999999999999999998766 4677788999999999999999999999999999999874   56


Q ss_pred             HHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCChh
Q 021175          259 WNNLGDAYEKK--------KDLKSALKAFEEVLLFDPNNKV  291 (316)
Q Consensus       259 ~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~  291 (316)
                      ++..|.++...        .-..+|...+++.++.-|++.-
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y  151 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY  151 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence            77888887642        2236888999999999998743

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.17  E-value=5.8e-06  Score=47.29  Aligned_cols=32  Identities=31%  Similarity=0.638  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 021175          223 QVYNALGVSYVREGKLDKGISQFETAVKLQPG  254 (316)
Q Consensus       223 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  254 (316)
                      .+++.+|.+++.+|++++|+++|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.15  E-value=0.00018  Score=62.95  Aligned_cols=129  Identities=12%  Similarity=0.109  Sum_probs=106.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLR-RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      +.+..+.|...|+++.+..+.....|...|...+. .++.+.|...|+.+++    ..|.+...+......+...|+.+.
T Consensus        13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk----~f~~~~~~~~~Y~~~l~~~~d~~~   88 (280)
T PF05843_consen   13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLK----KFPSDPDFWLEYLDFLIKLNDINN   88 (280)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH----HHTT-HHHHHHHHHHHHHTT-HHH
T ss_pred             HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHhCcHHH
Confidence            67779999999999997777788999999999777 5666669999999999    477888888888899999999999


Q ss_pred             HHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175          241 GISQFETAVKLQPGYV---TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP  294 (316)
Q Consensus       241 A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  294 (316)
                      |...|++++..-|...   ..|......-...|+.+...+..+++.+.-|++.....
T Consensus        89 aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen   89 ARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             HHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            9999999999877654   67778888888899999999999999999888554433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.0005  Score=57.95  Aligned_cols=127  Identities=16%  Similarity=0.151  Sum_probs=101.7

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLR----RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g  236 (316)
                      ++..+.+-|++.+++..+.+.+  .....|+.++..    .+++.+|.-+|++.-++    .|..+...+.++.+++.+|
T Consensus       148 lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k----~~~T~~llnG~Av~~l~~~  221 (299)
T KOG3081|consen  148 LKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK----TPPTPLLLNGQAVCHLQLG  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc----cCCChHHHccHHHHHHHhc
Confidence            3777888899999888887654  345556665554    36789999999998883    6667888899999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCChhHH
Q 021175          237 KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL-KAFEEVLLFDPNNKVAR  293 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~a~  293 (316)
                      +|++|...+++++..++++++.+.|+-.+-...|...++. +...+....+|+++-..
T Consensus       222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk  279 (299)
T KOG3081|consen  222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK  279 (299)
T ss_pred             CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence            9999999999999999999999999999999999876655 45666666788776543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.15  E-value=4e-06  Score=48.04  Aligned_cols=34  Identities=38%  Similarity=0.653  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175          256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  289 (316)
                      +.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00021  Score=60.20  Aligned_cols=138  Identities=16%  Similarity=0.081  Sum_probs=113.3

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cC
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR----EG  236 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~----~g  236 (316)
                      ...+++++|.....+     -...++...--.++.+..+.+-|++..++..+    .+  +-.....|+.++.+    .+
T Consensus       119 ~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~----id--ed~tLtQLA~awv~la~gge  187 (299)
T KOG3081|consen  119 MHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQ----ID--EDATLTQLAQAWVKLATGGE  187 (299)
T ss_pred             hcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cc--hHHHHHHHHHHHHHHhccch
Confidence            378899999887776     23445555666788889999999999988887    33  33455566666654    36


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          237 KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++.+|.-+|++--+..|..+......+.|...+|++++|...++.++..++++++...++-.+-..+|...++
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~  260 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV  260 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence            7999999999999988889999999999999999999999999999999999999999999888888876433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=0.00033  Score=57.90  Aligned_cols=135  Identities=15%  Similarity=0.129  Sum_probs=103.3

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS------ATEYFELGAVMLRR-KFYPAATKYLLQAIEKWDGDD--QDLAQVYNALGV  230 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~--p~~~~~~~~lg~  230 (316)
                      .++..+.++|+..+++++++..+.      +.-+..+|.+|... .++++|+.+|+++-+.+....  ...-.++.-.+.
T Consensus        83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~  162 (288)
T KOG1586|consen   83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ  162 (288)
T ss_pred             HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence            447789999999999999877654      34456889888876 899999999999998654311  122334455566


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175          231 SYVREGKLDKGISQFETAVKLQPGYV-------TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP  294 (316)
Q Consensus       231 ~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  294 (316)
                      .-...++|.+|++.|++..+..-++.       ...+.-|.|+....|.-.+...+++-.+++|...+.+.
T Consensus       163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE  233 (288)
T KOG1586|consen  163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE  233 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence            66778999999999999987655442       34456788899889999999999999999998776653

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.11  E-value=0.00044  Score=69.86  Aligned_cols=177  Identities=14%  Similarity=0.061  Sum_probs=99.6

Q ss_pred             hccchHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYE-IGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVM  194 (316)
Q Consensus       116 ~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  194 (316)
                      .-++.+.|....+ +...++......-++...+++++-+.|.        .-+.-.+.|+++.+... .-..|..|..+|
T Consensus      1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--------~eesl~kVFeRAcqycd-~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--------TEESLKKVFERACQYCD-AYTVHLKLLGIY 1540 (1710)
T ss_pred             hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--------cHHHHHHHHHHHHHhcc-hHHHHHHHHHHH
Confidence            3445566666554 2333433333344444445555443332        22334445555544432 233455666666


Q ss_pred             HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCH
Q 021175          195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG--YVTAWNNLGDAYEKKKDL  272 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~  272 (316)
                      ...+++++|.++++.-++.    ..+....|..+|..++++++-++|...+++|++.-|.  +.+.....++..++.|+.
T Consensus      1541 ~k~ek~~~A~ell~~m~KK----F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKK----FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred             HHhhcchhHHHHHHHHHHH----hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            6666666666666666663    2245566666666666666666666666666666665  555555666666666666


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          273 KSALKAFEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       273 ~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      +.+...|+..+.-.|.-.+.|..+.....+.|+
T Consensus      1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred             hhhHHHHHHHHhhCccchhHHHHHHHHHHccCC
Confidence            666666666666666666666666555555444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=0.00032  Score=60.95  Aligned_cols=118  Identities=13%  Similarity=0.010  Sum_probs=61.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHH
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI  242 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~  242 (316)
                      +|+..+|....++.++..|.+.-++..--.+++..|+.+.-...+++.+..+...-|-.....-.++..+...|-|++|.
T Consensus       116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE  195 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE  195 (491)
T ss_pred             cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence            44555555555555555555555555555555555555555555555554322223333334444455555555555555


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175          243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE  280 (316)
Q Consensus       243 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  280 (316)
                      +.-++++++||.+..+....+-++...|++.++.+.+.
T Consensus       196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~  233 (491)
T KOG2610|consen  196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY  233 (491)
T ss_pred             HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence            55555555555555555555555555555555544443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.09  E-value=8.5e-06  Score=46.57  Aligned_cols=34  Identities=41%  Similarity=0.725  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175          256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  289 (316)
                      +.+++.+|.++..+|++++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.09  E-value=6.1e-06  Score=74.61  Aligned_cols=106  Identities=18%  Similarity=0.247  Sum_probs=98.8

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK  237 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~  237 (316)
                      .+.+..++++.|+..|.++++++|+.+..+-+.+.++.+.+++..|+.-+.+|++    .+|....+|+..|.+....++
T Consensus        12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie----~dP~~~K~Y~rrg~a~m~l~~   87 (476)
T KOG0376|consen   12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIE----LDPTYIKAYVRRGTAVMALGE   87 (476)
T ss_pred             hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhh----cCchhhheeeeccHHHHhHHH
Confidence            3345788999999999999999999999999999999999999999999999999    799999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175          238 LDKGISQFETAVKLQPGYVTAWNNLGDAYE  267 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  267 (316)
                      +.+|...|++...+.|+++.+...+-.|-.
T Consensus        88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   88 FKKALLDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             HHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            999999999999999999998887776643

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.08  E-value=3.4e-05  Score=69.86  Aligned_cols=145  Identities=19%  Similarity=0.145  Sum_probs=115.9

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCC--CCcc--HHHHHHHHHH
Q 021175          156 VIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEK-WDG--DDQD--LAQVYNALGV  230 (316)
Q Consensus       156 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~--~~p~--~~~~~~~lg~  230 (316)
                      ..+.++...+...+....+.++....+.+.+....++.++..|++.+|.+.+...--. .+.  ..|.  ....++|+|.
T Consensus       212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc  291 (696)
T KOG2471|consen  212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC  291 (696)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence            3344556777777888888888888899999999999999999999999887543211 010  2333  2345689999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh---------CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175          231 SYVREGKLDKGISQFETAVKL---------QP---------GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       231 ~~~~~g~~~~A~~~~~~al~~---------~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  292 (316)
                      ++++.|.|.-+..+|.+|++.         .|         ..-++.||.|..|...|+.-.|.++|.++.+..-.+|..
T Consensus       292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrl  371 (696)
T KOG2471|consen  292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRL  371 (696)
T ss_pred             EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHH
Confidence            999999999999999999961         12         125688999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 021175          293 RPRRDALK  300 (316)
Q Consensus       293 ~~~l~~l~  300 (316)
                      |.+++.+-
T Consensus       372 WLRlAEcC  379 (696)
T KOG2471|consen  372 WLRLAECC  379 (696)
T ss_pred             HHHHHHHH
Confidence            99998763

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.07  E-value=0.00027  Score=68.42  Aligned_cols=129  Identities=17%  Similarity=0.056  Sum_probs=106.6

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      +.+++.+|.+...+.++..|+...+....|..+.+.|+.++|..+++..-.    ..+++....-.+-.+|..+|++++|
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~----~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYG----LKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc----CCCCchHHHHHHHHHHHHHhhhhHH
Confidence            788999999999999999999999999999999999999999977766655    5777888888899999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR  295 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  295 (316)
                      ...|+++++.+|+ -+..+.+=.+|.+.+.|.+-.+.--+.-+..|+++-....
T Consensus        97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs  149 (932)
T KOG2053|consen   97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS  149 (932)
T ss_pred             HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence            9999999999999 7777777778887777754333333333466776655433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.05  E-value=5.7e-06  Score=47.40  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=20.0

Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCChHHHH
Q 021175          173 LQEQVRSGDASATEYFELGAVMLRRKFYPAAT  204 (316)
Q Consensus       173 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  204 (316)
                      |+++++.+|+++.+|+++|.++...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45566666666666666666666666666654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.04  E-value=6.9e-05  Score=65.58  Aligned_cols=125  Identities=18%  Similarity=0.191  Sum_probs=103.6

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------ccHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDAS------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD------QDLAQVYNALG  229 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------p~~~~~~~~lg  229 (316)
                      -.+.++++++.|+++++...+.      -.++..+|..+...+|+++|.-+..+|.++.....      .....+.+.++
T Consensus       134 gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma  213 (518)
T KOG1941|consen  134 GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA  213 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence            6778899999999999865433      35788999999999999999999999999754322      12355678899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175          230 VSYVREGKLDKGISQFETAVKLQ------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD  286 (316)
Q Consensus       230 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  286 (316)
                      ..+..+|+.-.|.++.+++.++.      +-.+....-+|.+|...|+.+.|..-|+.+....
T Consensus       214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            99999999999999999999864      2346677789999999999999999999998754

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.04  E-value=0.0015  Score=59.32  Aligned_cols=175  Identities=14%  Similarity=0.155  Sum_probs=100.5

Q ss_pred             hhhhhHHHHHHHH-hhccchHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc
Q 021175          102 SFGSSSWLISARV-ANASENVQMDAVYEIG-ELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRS  179 (316)
Q Consensus       102 ~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  179 (316)
                      +....+|....+. ..-|+.++..+.|+.+ ...+|....-   .---++.+-..|..-..+...+.+.+.+.|+.++++
T Consensus       319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr---~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l  395 (677)
T KOG1915|consen  319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKR---YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL  395 (677)
T ss_pred             CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3345677777776 5557888888888633 3333332211   111222222223333456778889999999999998


Q ss_pred             CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175          180 GDAS----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       180 ~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  255 (316)
                      -|+.    +..|...+....++.+.+.|.+.+..|+-++    |.+-. .-..-.+-.+++++|.....|++-+...|.+
T Consensus       396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c----PK~Kl-Fk~YIelElqL~efDRcRkLYEkfle~~Pe~  470 (677)
T KOG1915|consen  396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC----PKDKL-FKGYIELELQLREFDRCRKLYEKFLEFSPEN  470 (677)
T ss_pred             cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC----CchhH-HHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence            8864    5677777777777777777777777777643    22111 1111112234455555555555555555555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175          256 VTAWNNLGDAYEKKKDLKSALKAFEEVLL  284 (316)
Q Consensus       256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~  284 (316)
                      -.+|...|..-..+|+.+.|...|+-|+.
T Consensus       471 c~~W~kyaElE~~LgdtdRaRaifelAi~  499 (677)
T KOG1915|consen  471 CYAWSKYAELETSLGDTDRARAIFELAIS  499 (677)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence            55555555555555555555555555544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.02  E-value=0.0025  Score=51.43  Aligned_cols=82  Identities=17%  Similarity=0.086  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHH
Q 021175          224 VYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN-KVARPRRDAL  299 (316)
Q Consensus       224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~~l  299 (316)
                      +-..++..+...|++++|+..++.++....+.   .-+-.+|+.+...+|++|+|+..+.....  ++. +..-...|.+
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDi  168 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhH
Confidence            33456666677777777777777666532221   33445667777777777777666654322  111 1223334555


Q ss_pred             HhhCCCCC
Q 021175          300 KDRVPLYK  307 (316)
Q Consensus       300 ~~~~~~~~  307 (316)
                      ....|+-+
T Consensus       169 ll~kg~k~  176 (207)
T COG2976         169 LLAKGDKQ  176 (207)
T ss_pred             HHHcCchH
Confidence            55555544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.02  E-value=0.00057  Score=69.11  Aligned_cols=158  Identities=16%  Similarity=0.175  Sum_probs=131.0

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..+.+++....|+.+..+.....        .+..+.-.|.     ..+.+++|.+.++..++...+....|..+|..++
T Consensus      1509 ~yG~eesl~kVFeRAcqycd~~~--------V~~~L~~iy~-----k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1509 AYGTEESLKKVFERACQYCDAYT--------VHLKLLGIYE-----KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL 1575 (1710)
T ss_pred             hhCcHHHHHHHHHHHHHhcchHH--------HHHHHHHHHH-----HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence            34556665667776655555443        2333333343     7889999999999999998899999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA  275 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  275 (316)
                      .+.+-+.|...+++|++..|+  .++.+....-+.+-++.|+.+.+...|+..+.-+|.-.+.|.-+...-.+.|+.+..
T Consensus      1576 ~~ne~~aa~~lL~rAL~~lPk--~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALKSLPK--QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred             cccHHHHHHHHHHHHHhhcch--hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH
Confidence            999999999999999995332  347778888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q 021175          276 LKAFEEVLLFDPN  288 (316)
Q Consensus       276 ~~~~~~al~~~p~  288 (316)
                      ...|++++.+.=.
T Consensus      1654 R~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1654 RDLFERVIELKLS 1666 (1710)
T ss_pred             HHHHHHHHhcCCC
Confidence            9999999987533

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.01  E-value=0.00012  Score=57.26  Aligned_cols=64  Identities=17%  Similarity=0.225  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      ..+...++..+...|++++|+..+++++..+|.+..++..+-.+|...|+..+|++.|++..+.
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            4466678888999999999999999999999999999999999999999999999999988643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.00056  Score=58.62  Aligned_cols=143  Identities=15%  Similarity=0.103  Sum_probs=106.5

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHH--HHHHHc
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALG--VSYVRE  235 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg--~~~~~~  235 (316)
                      .+....+++.++...++.++...|+..++...++.++...|+.++|...+...-.    .... ....-..+  ..+.+.
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~----~~~~-~~~~~l~a~i~ll~qa  216 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL----QAQD-KAAHGLQAQIELLEQA  216 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc----cchh-hHHHHHHHHHHHHHHH
Confidence            3455899999999999999999999999999999999999999999888765433    1111 11111111  222222


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHhhCCCC
Q 021175          236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN--NKVARPRRDALKDRVPLY  306 (316)
Q Consensus       236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~l~~l~~~~~~~  306 (316)
                      ....+ ...+++.+..+|++.++.+.++..+...|+.++|.+.+-..++.+.+  +..++..+-.+....|.-
T Consensus       217 a~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~  288 (304)
T COG3118         217 AATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA  288 (304)
T ss_pred             hcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence            22222 23456677889999999999999999999999999999999887654  567777777777777643

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.88  E-value=0.00029  Score=61.84  Aligned_cols=148  Identities=13%  Similarity=0.053  Sum_probs=111.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-Cc-cHHHHHHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDA-----SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD-DQ-DLAQVYNALGVSYVR  234 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~p-~~~~~~~~lg~~~~~  234 (316)
                      .-.++.+++.+-+-.+.....     -...+..+|+++...+.++++++.|++|++..... +| -...++..||..+..
T Consensus        95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~  174 (518)
T KOG1941|consen   95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ  174 (518)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence            444556666665555543222     23577789999999999999999999999965431 12 235678899999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChhHHHHHHH
Q 021175          235 EGKLDKGISQFETAVKLQPGY----------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP------NNKVARPRRDA  298 (316)
Q Consensus       235 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~l~~  298 (316)
                      .+|+++|.-+..+|.++-.+.          .-+.+.++..+..+|+...|.++.+++.++.-      -.......++.
T Consensus       175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD  254 (518)
T KOG1941|consen  175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD  254 (518)
T ss_pred             HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            999999999999999875432          34667889999999999999999999988732      23344556788


Q ss_pred             HHhhCCCCCCC
Q 021175          299 LKDRVPLYKGV  309 (316)
Q Consensus       299 l~~~~~~~~~A  309 (316)
                      ++...|+.+.+
T Consensus       255 IyR~~gd~e~a  265 (518)
T KOG1941|consen  255 IYRSRGDLERA  265 (518)
T ss_pred             HHHhcccHhHH
Confidence            89888887654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.85  E-value=0.00022  Score=62.41  Aligned_cols=117  Identities=20%  Similarity=0.158  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR-EGKLDKGISQFETAVKLQPGYVTAWNNLGD  264 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  264 (316)
                      +|..+.+...+.+..+.|...|.+|.+    ..+....+|...|.+-+. .++.+.|.+.|+.+++..|.+...|.....
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~----~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK----DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            577777778888889999999999987    566678899999999777 566666999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHhhCCCC
Q 021175          265 AYEKKKDLKSALKAFEEVLLFDPNNK---VARPRRDALKDRVPLY  306 (316)
Q Consensus       265 ~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~l~~l~~~~~~~  306 (316)
                      .+...|+.+.|...|++++..-|...   ..|......+...|+.
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl  123 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL  123 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999876654   4566666666665554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.85  E-value=0.00054  Score=64.26  Aligned_cols=93  Identities=16%  Similarity=0.206  Sum_probs=74.7

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 021175          157 IRQVLVRRELDLSAKELQEQVRSGDA----SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY  232 (316)
Q Consensus       157 ~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~  232 (316)
                      ++-...+|+.++|++.+++++.....    ..-+++.+|.++..+++|++|.+++.+..+.   .+-..+-+.|..|.++
T Consensus       274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~---s~WSka~Y~Y~~a~c~  350 (468)
T PF10300_consen  274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE---SKWSKAFYAYLAAACL  350 (468)
T ss_pred             HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc---cccHHHHHHHHHHHHH
Confidence            34445899999999999998854333    2457889999999999999999999999993   2334566677789999


Q ss_pred             HHcCCH-------HHHHHHHHHHHHhC
Q 021175          233 VREGKL-------DKGISQFETAVKLQ  252 (316)
Q Consensus       233 ~~~g~~-------~~A~~~~~~al~~~  252 (316)
                      ...|+.       ++|.+.++++-...
T Consensus       351 ~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  351 LMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            999999       88888888876653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.82  E-value=0.0014  Score=54.27  Aligned_cols=132  Identities=16%  Similarity=0.202  Sum_probs=90.7

Q ss_pred             hhhHHHHHHHHHHHHHc----C-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHHH
Q 021175          163 RRELDLSAKELQEQVRS----G-DA-SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ--DLAQVYNALGVSYVR  234 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~----~-p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p--~~~~~~~~lg~~~~~  234 (316)
                      .++|+.|-..|.++-+.    + .+ .+..|...+++| +.++.++|+++++++++++..+..  .-+..+..+|.+|..
T Consensus        47 aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs  125 (288)
T KOG1586|consen   47 AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES  125 (288)
T ss_pred             HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh
Confidence            44555555555554331    2 22 244555555555 556999999999999997653222  224456678999976


Q ss_pred             c-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 021175          235 E-GKLDKGISQFETAVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR  295 (316)
Q Consensus       235 ~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  295 (316)
                      . .++++|+.+|+++-+.....      -.++...+..-...|+|.+|++.|++.....-++.-..+.
T Consensus       126 dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys  193 (288)
T KOG1586|consen  126 DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS  193 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence            5 99999999999999876543      2445555666677899999999999998877776555443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.78  E-value=0.0053  Score=55.20  Aligned_cols=41  Identities=17%  Similarity=0.127  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175          258 AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA  298 (316)
Q Consensus       258 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  298 (316)
                      .+-.++.+..-.|++++|..++++++++.|.......-+..
T Consensus       307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~n  347 (374)
T PF13281_consen  307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLEN  347 (374)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHH
Confidence            34456677778899999999999999999877655444433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00024  Score=59.09  Aligned_cols=98  Identities=6%  Similarity=0.100  Sum_probs=85.3

Q ss_pred             HHHHHhhhHHHHHHHHHHHHH--------cCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc
Q 021175          158 RQVLVRRELDLSAKELQEQVR--------SGDAS----------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ  219 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~--------~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p  219 (316)
                      +.++..|+|.+|...|++++.        ..|..          ...+.|...++...|+|-+++++-...+.    .+|
T Consensus       186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~----~~~  261 (329)
T KOG0545|consen  186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR----HHP  261 (329)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh----cCC
Confidence            344589999999999999874        34443          34688999999999999999999999999    699


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 021175          220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAW  259 (316)
Q Consensus       220 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  259 (316)
                      .+..+|+..|.++...=+.++|...|.++++++|....+-
T Consensus       262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            9999999999999999999999999999999999875543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.75  E-value=5e-05  Score=43.32  Aligned_cols=30  Identities=33%  Similarity=0.657  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 021175          224 VYNALGVSYVREGKLDKGISQFETAVKLQP  253 (316)
Q Consensus       224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  253 (316)
                      +++.+|.+|..+|++++|+++|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344445555555555555555555544444

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.74  E-value=6.3e-05  Score=42.91  Aligned_cols=32  Identities=41%  Similarity=0.702  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175          257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN  288 (316)
Q Consensus       257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  288 (316)
                      .+++.+|.+|..+|++++|.++|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46777888888888888888888888888774

...

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.68  E-value=2.4e-05  Score=67.83  Aligned_cols=91  Identities=23%  Similarity=0.177  Sum_probs=78.8

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      .+..|.+++|++.+..++.++|..+..|...+.++.+.++...|+.-+..+++    ++|+.+.-|-..|.+...+|+++
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e----in~Dsa~~ykfrg~A~rllg~~e  199 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE----INPDSAKGYKFRGYAERLLGNWE  199 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc----cCcccccccchhhHHHHHhhchH
Confidence            44788888899999999999998888888899999999999999999999988    78888888888888888889999


Q ss_pred             HHHHHHHHHHHhCCC
Q 021175          240 KGISQFETAVKLQPG  254 (316)
Q Consensus       240 ~A~~~~~~al~~~p~  254 (316)
                      +|...++.+++++-+
T Consensus       200 ~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  200 EAAHDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHHHHhcccc
Confidence            999999888887644

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.68  E-value=0.011  Score=54.06  Aligned_cols=140  Identities=12%  Similarity=0.136  Sum_probs=116.6

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ..++++..|...+++++..+..+...|...+..-++.+....|...+++|+.    .-|.--..|+..-.+-..+|+.+.
T Consensus        84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt----~lPRVdqlWyKY~ymEE~LgNi~g  159 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT----ILPRVDQLWYKYIYMEEMLGNIAG  159 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH----hcchHHHHHHHHHHHHHHhcccHH
Confidence            3788999999999999999999999999999999999999999999999999    678888888888888888999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      |.+.|++=++..|+ .++|...-..-...+..+.|...|++.+-.+|+ ...|...+....+-|+.
T Consensus       160 aRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~  223 (677)
T KOG1915|consen  160 ARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNV  223 (677)
T ss_pred             HHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcH
Confidence            99999999998886 456666666667777888888888888888875 44555555555555543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.65  E-value=0.0049  Score=45.54  Aligned_cols=90  Identities=19%  Similarity=0.059  Sum_probs=54.0

Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCc--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcH----
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQ--------DLAQVYNALGVSYVREGKLDKGISQFETAVK-------LQPGYV----  256 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~----  256 (316)
                      ..|.|++|...++++++....+.|        -++-++..|+.++..+|+|++++..-++++.       ++.+..    
T Consensus        21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI  100 (144)
T PF12968_consen   21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI  100 (144)
T ss_dssp             HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence            345666666666666665433222        1355666677777777777776666666664       233332    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          257 TAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      .+-++.+..+...|+.++|+..|+.+-++
T Consensus       101 aaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  101 AAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            34467777888888888888888877653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.64  E-value=1.9e-05  Score=68.48  Aligned_cols=94  Identities=17%  Similarity=0.208  Sum_probs=87.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 021175          191 GAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK  270 (316)
Q Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  270 (316)
                      +.-.+..|++++|++++..+++    ++|..+..|...+.++.++++...|+..+..|+.++|+.+.-|-..|.+...+|
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~----lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg  196 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIE----LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG  196 (377)
T ss_pred             HHHHhcCcchhhhhcccccccc----cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence            3445567889999999999999    799999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q 021175          271 DLKSALKAFEEVLLFDPN  288 (316)
Q Consensus       271 ~~~~A~~~~~~al~~~p~  288 (316)
                      ++++|...+..+.+++-+
T Consensus       197 ~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  197 NWEEAAHDLALACKLDYD  214 (377)
T ss_pred             chHHHHHHHHHHHhcccc
Confidence            999999999999988644

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.64  E-value=0.023  Score=50.74  Aligned_cols=125  Identities=12%  Similarity=-0.009  Sum_probs=83.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHH---HHHHHHHHHH-HHcCC
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLA---QVYNALGVSY-VREGK  237 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~---~~~~~lg~~~-~~~g~  237 (316)
                      ..|+.+.|..+-+++-...|.-+-++...-......|+|+.|++..+...+..- +.++.+   .+-..-+... .-.-+
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-ie~~~aeR~rAvLLtAkA~s~ldad  244 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-IEKDVAERSRAVLLTAKAMSLLDAD  244 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHHhcCC
Confidence            789999999999999999999888888887888899999999999987665210 122111   1111111111 12235


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175          238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP  287 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  287 (316)
                      ...|...-.++.++.|+...+-..-+..+++.|+..++-..++.+.+..|
T Consensus       245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP  294 (531)
T COG3898         245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP  294 (531)
T ss_pred             hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence            66666666667777777666666666666666666666666666666655

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.63  E-value=0.0014  Score=51.16  Aligned_cols=85  Identities=15%  Similarity=0.164  Sum_probs=67.1

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc
Q 021175          162 VRRELDLSAKELQEQVRSGDAS----------------------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ  219 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p  219 (316)
                      ..++.+.+++.+++++......                      ..+...++..+...|++++|+..+++++.    .+|
T Consensus        18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~----~dP   93 (146)
T PF03704_consen   18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA----LDP   93 (146)
T ss_dssp             HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----HST
T ss_pred             HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCC
Confidence            4567777778888877643211                      34666778888899999999999999999    699


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          220 DLAQVYNALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       220 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      .+..++..+-.+|...|+..+|++.|++..+
T Consensus        94 ~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   94 YDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999988765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.00055  Score=57.64  Aligned_cols=122  Identities=18%  Similarity=0.205  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CcHHH
Q 021175          185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL----QP--GYVTA  258 (316)
Q Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p--~~~~~  258 (316)
                      .+.+.+..++...|+|.-....+.+.++.   .+|.++.....||.+.++.||.+.|..++++.-+.    +.  ..--+
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~---~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V  254 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY---YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV  254 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHh---CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence            46777888899999999999999999995   45788888899999999999999999999955433    22  23456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          259 WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       259 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ..+.+.+|.-.+++.+|...|.+++..||.++.+-.+.+.+...+|+..+|
T Consensus       255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA  305 (366)
T KOG2796|consen  255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA  305 (366)
T ss_pred             HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence            778888999999999999999999999999999999888888777776544

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.0011  Score=57.69  Aligned_cols=95  Identities=12%  Similarity=0.082  Sum_probs=84.0

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 021175          157 IRQVLVRRELDLSAKELQEQVRSGDAS----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY  232 (316)
Q Consensus       157 ~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~  232 (316)
                      |+.++..++|..|+..|.+.++..-.+    +..|.|.+-+....|+|..|+.-..+++.    .+|.+..+++.-+.|+
T Consensus        88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~----~~P~h~Ka~~R~Akc~  163 (390)
T KOG0551|consen   88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK----LKPTHLKAYIRGAKCL  163 (390)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh----cCcchhhhhhhhhHHH
Confidence            344558999999999999999865443    56889999999999999999999999999    7999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCc
Q 021175          233 VREGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       233 ~~~g~~~~A~~~~~~al~~~p~~  255 (316)
                      +.++++++|..++++.++++...
T Consensus       164 ~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  164 LELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHH
Confidence            99999999999999998776543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.51  E-value=0.0041  Score=59.77  Aligned_cols=145  Identities=20%  Similarity=0.228  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhcCC
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRS-----GDASATEYFELGAVMLRRK-----FYPAATKYLLQAIEKWDG  216 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~  216 (316)
                      +...+|..+.....-..+|.+.|+.+++.+.+.     ....+.+.+.+|.+|.+..     +++.|..+|.++.+.   
T Consensus       246 a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~---  322 (552)
T KOG1550|consen  246 AQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL---  322 (552)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc---
Confidence            344445555444344677999999999998771     1125668899999999853     778899999999883   


Q ss_pred             CCccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC
Q 021175          217 DDQDLAQVYNALGVSYVREG---KLDKGISQFETAVKLQPGYVTAWNNLGDAYEK----KKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       217 ~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~  289 (316)
                         +++.+.+.+|.++..-.   ++..|.++|..|.+  -.+..+.+++|.||..    .-+...|..+++++.+.+  +
T Consensus       323 ---g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~  395 (552)
T KOG1550|consen  323 ---GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--N  395 (552)
T ss_pred             ---CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--C
Confidence               45668888999998765   67899999999976  5678899999999875    347899999999999987  4


Q ss_pred             hhHHHHHHHHHh
Q 021175          290 KVARPRRDALKD  301 (316)
Q Consensus       290 ~~a~~~l~~l~~  301 (316)
                      +.+...++.++.
T Consensus       396 ~~A~~~~~~~~~  407 (552)
T KOG1550|consen  396 PSAAYLLGAFYE  407 (552)
T ss_pred             hhhHHHHHHHHH
Confidence            566666655543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=0.015  Score=50.84  Aligned_cols=116  Identities=10%  Similarity=-0.072  Sum_probs=99.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHH
Q 021175          190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL-QPGY---VTAWNNLGDA  265 (316)
Q Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~  265 (316)
                      -+.+....|++-+|-...++.++    ..|.+.-++..--.+++..|+.+.-...+++.+.. +|+.   .-++-.++-+
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~----d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg  184 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLD----DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG  184 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHH----hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence            34556678999999999999999    68999888888888999999999999999999987 5555   4455567778


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          266 YEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       266 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +...|-+++|.+.-+++++++|.+.-+...++.+.+-.|+.++.
T Consensus       185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg  228 (491)
T KOG2610|consen  185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEG  228 (491)
T ss_pred             HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhH
Confidence            88999999999999999999999999999999998888887654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.46  E-value=0.00066  Score=42.93  Aligned_cols=46  Identities=17%  Similarity=0.285  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      +.++.++..+.++|+|++|..+.+.+++++|++.++......+..+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~   47 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK   47 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence            3456677777777777777777777777777777776665555443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.42  E-value=0.012  Score=51.72  Aligned_cols=133  Identities=23%  Similarity=0.208  Sum_probs=102.2

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC-
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLR----RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG-  236 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g-  236 (316)
                      ...+..+|...|+.  ......+.+.+++|..+..    ..|..+|..+|+++.+.   -++.-..+.+++|.+|..-+ 
T Consensus        89 v~~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~---g~~~a~~~~~~l~~~~~~g~~  163 (292)
T COG0790          89 VSRDKTKAADWYRC--AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL---GNVEAALAMYRLGLAYLSGLQ  163 (292)
T ss_pred             ccccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHHHcChh
Confidence            34568889999994  4445678889999999987    45999999999999983   12221455888888887642 


Q ss_pred             ------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          237 ------KLDKGISQFETAVKLQPGYVTAWNNLGDAYEK----KKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       237 ------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                            +..+|...|.++....  ++.+.+++|.+|..    ..+.++|..+|+++.+...  ..+...++ +....|
T Consensus       164 ~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         164 ALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             hhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence                  3347999999988866  78899999988866    3488999999999998876  78888888 444444

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.39  E-value=0.00036  Score=39.24  Aligned_cols=31  Identities=26%  Similarity=0.439  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 021175          224 VYNALGVSYVREGKLDKGISQFETAVKLQPG  254 (316)
Q Consensus       224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  254 (316)
                      +++++|.++...|++++|++.|++.++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3455555555555555555555555555554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.38  E-value=0.00092  Score=64.86  Aligned_cols=107  Identities=17%  Similarity=0.092  Sum_probs=91.8

Q ss_pred             HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 021175          195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS  274 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  274 (316)
                      ...+++.+|.+...+.++    -.|+...+...-|.++.++|+.++|..+++..-...+++......+-.+|..+|+.++
T Consensus        20 ld~~qfkkal~~~~kllk----k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLK----KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhhHHHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence            356789999999999999    4899999999999999999999999988888777888888899999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          275 ALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       275 A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      |..+|+++.+.+|+ .+....+=..+.+.++|
T Consensus        96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~y  126 (932)
T KOG2053|consen   96 AVHLYERANQKYPS-EELLYHLFMAYVREKSY  126 (932)
T ss_pred             HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence            99999999999999 66655554445444444

>PRK10941 hypothetical protein; Provisional

Probab=97.35  E-value=0.003  Score=54.53  Aligned_cols=81  Identities=12%  Similarity=0.186  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175          222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD  301 (316)
Q Consensus       222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~  301 (316)
                      .....++-.+|.+.++++.|+.+.+..+.++|+++.-+...|.+|.++|.+..|...++..++..|+++.+......+..
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~  260 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS  260 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            34567788899999999999999999999999999999999999999999999999999999999999988766655544


Q ss_pred             h
Q 021175          302 R  302 (316)
Q Consensus       302 ~  302 (316)
                      .
T Consensus       261 l  261 (269)
T PRK10941        261 I  261 (269)
T ss_pred             H
Confidence            3

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.34  E-value=0.02  Score=44.97  Aligned_cols=114  Identities=19%  Similarity=0.064  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG  263 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  263 (316)
                      ...+..+..+-...++.+++...+...--    +.|+.++.-..-|..+...|++.+|+..+++..+-.|..+.+.-.++
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrv----LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA   85 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRV----LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA   85 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            34556666666777788888887776666    68888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175          264 DAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV  303 (316)
Q Consensus       264 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~  303 (316)
                      .|+..+||.+- ..+-+++++..+ ++.+......+..+-
T Consensus        86 ~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~~~  123 (160)
T PF09613_consen   86 LCLYALGDPSW-RRYADEVLESGA-DPDARALVRALLARA  123 (160)
T ss_pred             HHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHHhc
Confidence            88888887542 333444555443 455555555554443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.33  E-value=0.00043  Score=40.08  Aligned_cols=23  Identities=35%  Similarity=0.638  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q 021175          225 YNALGVSYVREGKLDKGISQFET  247 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~  247 (316)
                      +.+||.+|...|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444444444555555444444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.014  Score=48.93  Aligned_cols=90  Identities=16%  Similarity=0.086  Sum_probs=40.5

Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQ--DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV------TAWNNLGDAYE  267 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~  267 (316)
                      ..-++++|++.|++++......+.  .-.+.+-..+.++.+.+++++|-..+.+-....-..-      ..+...-.+|.
T Consensus       122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L  201 (308)
T KOG1585|consen  122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL  201 (308)
T ss_pred             hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence            344445555555555554332111  1122233344445555555555555544333322221      11222333444


Q ss_pred             HcCCHHHHHHHHHHHHhc
Q 021175          268 KKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       268 ~~g~~~~A~~~~~~al~~  285 (316)
                      ...||..|..+++..-++
T Consensus       202 ~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  202 YAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             hHHHHHHHHHHhcchhcC
Confidence            555777777777776655

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.32  E-value=0.00021  Score=41.40  Aligned_cols=29  Identities=34%  Similarity=0.622  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175          258 AWNNLGDAYEKKKDLKSALKAFEEVLLFD  286 (316)
Q Consensus       258 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~  286 (316)
                      ++.+||.+|.++|++++|+++|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999999966543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.31  E-value=0.00086  Score=62.30  Aligned_cols=104  Identities=15%  Similarity=0.087  Sum_probs=65.6

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 021175          192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDL-AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK  270 (316)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  270 (316)
                      ..+...|+...|+.++..|+-    ..|.. -....+|+.+...-|-.-.|-..+.+++.++...+-.++.+|.+|..+.
T Consensus       615 lywr~~gn~~~a~~cl~~a~~----~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~  690 (886)
T KOG4507|consen  615 LYWRAVGNSTFAIACLQRALN----LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK  690 (886)
T ss_pred             ceeeecCCcHHHHHHHHHHhc----cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence            333445666666666666666    34432 2345566666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          271 DLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       271 ~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      +.+.|++.++.+++++|+++.....+..+
T Consensus       691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  691 NISGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             hhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            67777777777777666666666555444

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.30  E-value=0.011  Score=43.64  Aligned_cols=93  Identities=13%  Similarity=0.109  Sum_probs=72.2

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CCccHH
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDA------------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---DDQDLA  222 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~p~~~  222 (316)
                      +..+..|.|++|...++++++....            ++-++..|+.++...|+|++++...++++..+..   ++.+..
T Consensus        17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG   96 (144)
T PF12968_consen   17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG   96 (144)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence            3455788999999999999875432            2457889999999999999999999999987643   455544


Q ss_pred             H----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          223 Q----VYNALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       223 ~----~~~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      .    +-++.|..+...|+.++|++.|+.+-+
T Consensus        97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            4    446789999999999999999999875

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.29  E-value=0.0013  Score=56.72  Aligned_cols=68  Identities=13%  Similarity=0.083  Sum_probs=41.7

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175          192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG  263 (316)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  263 (316)
                      .-..+.|+.++|...|+.|++    +.|.+++++..+|......++.-+|-++|-+|+.++|.+.+++.+..
T Consensus       124 ~~~~~~Gk~ekA~~lfeHAla----laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  124 GRSRKDGKLEKAMTLFEHALA----LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHhccchHHHHHHHHHHHh----cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            334455666666666666666    56666666666666666566666666666666666666666655554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.29  E-value=0.02  Score=52.71  Aligned_cols=108  Identities=11%  Similarity=0.010  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHH
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ--DLAQVYNALGVSYVREGKLDKGISQFETAVKL-QPGYVTAWN  260 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~  260 (316)
                      ..+...+|.+..+.|+.+||++.++..++    ..|  ++..++.+|-.++..+++|+++...+.+--++ -|+.+...+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlk----e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~Y  334 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLK----EFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICY  334 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHh----hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHH
Confidence            34566899999999999999999999998    344  36779999999999999999999999886443 256666666


Q ss_pred             HHHHHHHH-cCC---------------HHHHHHHHHHHHhcCCCChhHHHH
Q 021175          261 NLGDAYEK-KKD---------------LKSALKAFEEVLLFDPNNKVARPR  295 (316)
Q Consensus       261 ~lg~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~a~~~  295 (316)
                      .-+..-.+ .|+               -..|.+...+|++.||.-+.....
T Consensus       335 TaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe  385 (539)
T PF04184_consen  335 TAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE  385 (539)
T ss_pred             HHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence            55544322 222               235788999999999987655433

The molecular function of this protein is uncertain.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.26  E-value=0.0014  Score=60.90  Aligned_cols=102  Identities=19%  Similarity=0.198  Sum_probs=90.2

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASA-TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ..|+...|++++..++...|... ....++++++.+.|-..+|...+.+++.    +....+-.++.+|.++....+.++
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~----~~~sepl~~~~~g~~~l~l~~i~~  694 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA----INSSEPLTFLSLGNAYLALKNISG  694 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh----hcccCchHHHhcchhHHHHhhhHH
Confidence            57899999999999999999643 4678999999999999999999999999    566777889999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYE  267 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~  267 (316)
                      |++.+++|++++|+++.+-..|-.+-+
T Consensus       695 a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  695 ALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            999999999999999887776655544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.25  E-value=0.00053  Score=38.54  Aligned_cols=33  Identities=24%  Similarity=0.368  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175          257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  289 (316)
                      ++++++|.++...|++++|++.|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999974

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.21  E-value=0.0031  Score=44.93  Aligned_cols=46  Identities=26%  Similarity=0.312  Sum_probs=21.2

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175          243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN  288 (316)
Q Consensus       243 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  288 (316)
                      +.+++.++.+|++..+.+.+|..+...|++++|++.+-++++.+++
T Consensus         9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~   54 (90)
T PF14561_consen    9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD   54 (90)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            3444444445555555555555555555555555555555544443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.20  E-value=0.0012  Score=60.27  Aligned_cols=113  Identities=16%  Similarity=0.211  Sum_probs=89.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHHH-HHcCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CC-----
Q 021175          156 VIRQVLVRRELDLSAKELQEQ-VRSGDA--------SATEYFELGAVMLRRKFYPAATKYLLQAIEKW-----DG-----  216 (316)
Q Consensus       156 ~~~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~-----  216 (316)
                      ..+..+..|++.+|.+.+... +...|.        ..-.|+|+|.++++.|.|.-+..+|.+|++-.     ..     
T Consensus       246 Ksq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~  325 (696)
T KOG2471|consen  246 KSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK  325 (696)
T ss_pred             HHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence            345566788888888876653 333332        23357899999999999999999999999621     11     


Q ss_pred             ----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 021175          217 ----DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK  268 (316)
Q Consensus       217 ----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  268 (316)
                          ......+..||.|..|...|++-.|.++|.++++..-.++..|..+++|...
T Consensus       326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                1224578899999999999999999999999999999999999999998763

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.20  E-value=0.083  Score=46.31  Aligned_cols=136  Identities=21%  Similarity=0.197  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHhcCCCC
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDAS-ATEYFELGAVMLRRK-------FYPAATKYLLQAIEKWDGDD  218 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~~~~~  218 (316)
                      +...+|..+..... ...+..+|...|+++.+.+... ..+.+.+|..+..-.       +...|...|.++...     
T Consensus       111 a~~~lg~~~~~G~g-v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-----  184 (292)
T COG0790         111 ALFNLGLMYANGRG-VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-----  184 (292)
T ss_pred             HHHhHHHHHhcCCC-cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-----
Confidence            33444555542222 2448999999999999986655 466888888887652       233799999999883     


Q ss_pred             ccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---------------CHHHHHHHH
Q 021175          219 QDLAQVYNALGVSYVR----EGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK---------------DLKSALKAF  279 (316)
Q Consensus       219 p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---------------~~~~A~~~~  279 (316)
                       .++.+..++|.+|..    ..++++|+.+|+++.+...  ....+.++ ++...|               +...|...+
T Consensus       185 -~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~  260 (292)
T COG0790         185 -GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWL  260 (292)
T ss_pred             -cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHH
Confidence             377889999988865    4589999999999999877  88889999 666655               888899999


Q ss_pred             HHHHhcCCCChhH
Q 021175          280 EEVLLFDPNNKVA  292 (316)
Q Consensus       280 ~~al~~~p~~~~a  292 (316)
                      .++-...+.....
T Consensus       261 ~~~~~~~~~~~~~  273 (292)
T COG0790         261 QKACELGFDNACE  273 (292)
T ss_pred             HHHHHcCChhHHH
Confidence            9888776654433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.12  E-value=0.16  Score=45.56  Aligned_cols=119  Identities=17%  Similarity=0.046  Sum_probs=89.5

Q ss_pred             HhhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHH-HHHHHHHHHHcCCH
Q 021175          162 VRRELDLSAKELQEQVRSG--DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV-YNALGVSYVREGKL  238 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~-~~~lg~~~~~~g~~  238 (316)
                      -.||-..|.+.-+++-+.-  ...+-++..-++.-.-.|++++|.+-|+..+.     +|..-.. +..|=.--.+.|+.
T Consensus        96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar  170 (531)
T COG3898          96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR  170 (531)
T ss_pred             ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence            3566667777666665332  23456777778888889999999999998887     6664332 11122223467999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      +.|..+-+++-...|.-+.++...-...+..||++.|++..+...+.
T Consensus       171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~  217 (531)
T COG3898         171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA  217 (531)
T ss_pred             HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            99999999999999999999988888889999999999988766543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.033  Score=52.17  Aligned_cols=135  Identities=12%  Similarity=0.021  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 021175          168 LSAKELQEQVRSGDASATEYFE--LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQF  245 (316)
Q Consensus       168 ~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  245 (316)
                      -++..+...+..+|.++..+..  +...+...++...+.-....++.    .+|.++.++.+||.+....|....+...+
T Consensus        49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLS----VNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHh----cCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            3566666667788887776443  46677778888899999999999    69999999999999988877777666666


Q ss_pred             HH-HHHhCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          246 ET-AVKLQPGYVTAWNNL------GDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       246 ~~-al~~~p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      .+ +.+..|++......+      |.....+|+..++....+++.++.|.++.....+-...+....+
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~  192 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW  192 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence            55 888999987665555      88888899999999999999999999977766665555555555

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.06  E-value=0.097  Score=41.66  Aligned_cols=139  Identities=14%  Similarity=0.053  Sum_probs=100.4

Q ss_pred             HhhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          162 VRRELDLSAKELQEQVRSGDA--SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      ..+..++|...|...-+.+-.  ..-+.+..|.+....|+..+|+..|.+.-.-.+...+..-.+...-+..+...|-|+
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            577888899988887665543  245778888999999999999999999887222111122334555677788899998


Q ss_pred             HHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175          240 KGISQFETAV-KLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD  301 (316)
Q Consensus       240 ~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~  301 (316)
                      +-..-.+..- +-+|-...+.-.||..-.+.|++.+|..+|.+... +.+.+..-.+.+++..
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml  211 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML  211 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence            8766654432 34455577888999999999999999999998776 6666666655555543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.02  E-value=0.026  Score=50.78  Aligned_cols=126  Identities=13%  Similarity=0.171  Sum_probs=100.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-C---
Q 021175          180 GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-P-G---  254 (316)
Q Consensus       180 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-~---  254 (316)
                      .......+...+.+..+.|+++.|...+.++....+...+..+.+.+..+......|+.++|+..+++.+... . .   
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            4456788999999999999999999999999884322223367788888999999999999999999888711 0 0   


Q ss_pred             -----------------------------cHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          255 -----------------------------YVTAWNNLGDAYEKK------KDLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       255 -----------------------------~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                                                   .+.++..+|......      ++.+++...|+++++++|+...++...+..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                         145667777777777      889999999999999999999999998887


Q ss_pred             HhhCCC
Q 021175          300 KDRVPL  305 (316)
Q Consensus       300 ~~~~~~  305 (316)
                      ....-+
T Consensus       302 ~~~~~~  307 (352)
T PF02259_consen  302 NDKLLE  307 (352)
T ss_pred             HHHHHH
Confidence            766543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.99  E-value=0.013  Score=44.37  Aligned_cols=84  Identities=21%  Similarity=0.304  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 021175          221 LAQVYNALGVSYVRE---GKLDKGISQFETAVK-LQPG-YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR  295 (316)
Q Consensus       221 ~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  295 (316)
                      ..+..++++.++...   .+..+.+..+++.++ -.|. .-+..+.|+..+++.|+|++++.+.+..++.+|++.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            345566677666554   445677888888876 4443 35677788888888888888888888888888888888777


Q ss_pred             HHHHHhhCC
Q 021175          296 RDALKDRVP  304 (316)
Q Consensus       296 l~~l~~~~~  304 (316)
                      ...++.++.
T Consensus       111 k~~ied~it  119 (149)
T KOG3364|consen  111 KETIEDKIT  119 (149)
T ss_pred             HHHHHHHHh
Confidence            766665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.99  E-value=0.025  Score=55.00  Aligned_cols=122  Identities=19%  Similarity=0.189  Sum_probs=88.1

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCCc----------cHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD------GDDQ----------DLAQVY  225 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~~~p----------~~~~~~  225 (316)
                      ..|.|++|.+..+.--++  +--..|++.+.-+...+|.+.|+++|+|+--...      ..+|          .+...|
T Consensus       838 s~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~  915 (1416)
T KOG3617|consen  838 SQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLY  915 (1416)
T ss_pred             hcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHH
Confidence            566677666544432111  2345789999999999999999999997532100      0123          234566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175          226 NALGVSYVREGKLDKGISQFETAVKLQ---------------------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL  284 (316)
Q Consensus       226 ~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  284 (316)
                      ...|......|+.+.|+.+|..|-+..                     ..+..+.|.+|..|...|+..+|+..|.++-.
T Consensus       916 ~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  916 SWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             HHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            677888889999999999998886532                     34566889999999999999999999888754


Q ss_pred             c
Q 021175          285 F  285 (316)
Q Consensus       285 ~  285 (316)
                      +
T Consensus       996 f  996 (1416)
T KOG3617|consen  996 F  996 (1416)
T ss_pred             H
Confidence            4

>smart00028 TPR Tetratricopeptide repeats

Probab=96.97  E-value=0.0013  Score=35.90  Aligned_cols=29  Identities=31%  Similarity=0.676  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 021175          225 YNALGVSYVREGKLDKGISQFETAVKLQP  253 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p  253 (316)
                      +.++|.++..+|++++|+..++++++.+|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            34444444444444444444444444444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.96  E-value=0.0014  Score=54.17  Aligned_cols=59  Identities=29%  Similarity=0.593  Sum_probs=41.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 021175          232 YVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK  290 (316)
Q Consensus       232 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  290 (316)
                      ..+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            34556777777777777777777777777777777777777777777777777777653

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.96  E-value=0.061  Score=51.05  Aligned_cols=149  Identities=13%  Similarity=0.135  Sum_probs=116.8

Q ss_pred             HHHHHhhhHHHHHHHHHHHHH-cCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 021175          158 RQVLVRRELDLSAKELQEQVR-SGDAS-----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVS  231 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~-~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~  231 (316)
                      +..+..|+..+-+..|.++++ .+|..     ...|..+|..|...|+.+.|...|+++.+..-+.-.+-+.+|.+.|..
T Consensus       355 RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waem  434 (835)
T KOG2047|consen  355 RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEM  434 (835)
T ss_pred             hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHH
Confidence            334567888889999999886 46643     468999999999999999999999999984111122457899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 021175          232 YVREGKLDKGISQFETAVKLQPG------------------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR  293 (316)
Q Consensus       232 ~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  293 (316)
                      -.+..+++.|.+..++|...-.+                  ...+|..++......|-++.-...|++.+++.--.|..-
T Consensus       435 Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii  514 (835)
T KOG2047|consen  435 ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII  514 (835)
T ss_pred             HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999998864211                  145777888888889999999999999999988888888


Q ss_pred             HHHHHHHhhCCCC
Q 021175          294 PRRDALKDRVPLY  306 (316)
Q Consensus       294 ~~l~~l~~~~~~~  306 (316)
                      .|.+...+....+
T Consensus       515 ~NyAmfLEeh~yf  527 (835)
T KOG2047|consen  515 INYAMFLEEHKYF  527 (835)
T ss_pred             HHHHHHHHhhHHH
Confidence            8877766554433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.95  E-value=0.0071  Score=38.24  Aligned_cols=43  Identities=12%  Similarity=0.117  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 021175          223 QVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDA  265 (316)
Q Consensus       223 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  265 (316)
                      ++++.+|..+++.|+|++|.++.+.+++..|++.++......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4567788888888899999888888888888887776554443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.90  E-value=0.0017  Score=35.38  Aligned_cols=33  Identities=48%  Similarity=0.688  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175          257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  289 (316)
                      .+++++|.++..+|++++|..+++++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            468899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.89  E-value=0.053  Score=51.44  Aligned_cols=151  Identities=12%  Similarity=0.101  Sum_probs=98.3

Q ss_pred             HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCChHHH
Q 021175          128 EIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDA----SATEYFELGAVMLRRKFYPAA  203 (316)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A  203 (316)
                      +++...+|......  ....+...+.+|-     ..|+.+.|...++++.+.+-.    -+.+|.+-|..-.+..+++.|
T Consensus       372 eAv~~vdP~ka~Gs--~~~Lw~~faklYe-----~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~A  444 (835)
T KOG2047|consen  372 EAVKTVDPKKAVGS--PGTLWVEFAKLYE-----NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAA  444 (835)
T ss_pred             HHHHccCcccCCCC--hhhHHHHHHHHHH-----hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHH
Confidence            45555655554222  2234455555555     899999999999999886533    367899999999999999999


Q ss_pred             HHHHHHHHHhcC--------CCCc------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 021175          204 TKYLLQAIEKWD--------GDDQ------DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK  269 (316)
Q Consensus       204 ~~~~~~al~~~~--------~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  269 (316)
                      ..+.++|...-.        ...|      .+...|...+......|-++.-...|++.+++.--.++.-.|.|..+...
T Consensus       445 l~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh  524 (835)
T KOG2047|consen  445 LKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH  524 (835)
T ss_pred             HHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            999999886311        1112      12334455555555666666667777777776666666666666666655


Q ss_pred             CCHHHHHHHHHHHHhc
Q 021175          270 KDLKSALKAFEEVLLF  285 (316)
Q Consensus       270 g~~~~A~~~~~~al~~  285 (316)
                      .-+++|.+.|++.+.+
T Consensus       525 ~yfeesFk~YErgI~L  540 (835)
T KOG2047|consen  525 KYFEESFKAYERGISL  540 (835)
T ss_pred             HHHHHHHHHHHcCCcc
Confidence            5555555555555554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.80  E-value=0.1  Score=47.16  Aligned_cols=122  Identities=13%  Similarity=0.065  Sum_probs=83.5

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCcHHH
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR---EGKLDKGISQFETAV-KLQPGYVTA  258 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~  258 (316)
                      .++...++=..|...++|+.-++..+..-..-....++...+....|.++-+   .|+.++|++.+..++ ...+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4566677777788888888888887776662111134556667777888877   888888888888844 445667888


Q ss_pred             HHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          259 WNNLGDAYEKK---------KDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       259 ~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      +..+|.+|...         ...++|+.+|+++.+++|+. -.-.|++.+....|.
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH  274 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence            88888887642         23678888888888888653 333344445444443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=0.32  Score=44.88  Aligned_cols=140  Identities=17%  Similarity=0.079  Sum_probs=103.3

Q ss_pred             HhhhHHHHHHHHHHHHH---cCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH--HHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVR---SGDA-------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL--AQVYNALG  229 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~---~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~--~~~~~~lg  229 (316)
                      ..|++.+|++....+.+   ..|.       .+..++.+|.....-+.++.|+.+|..|.++   .+..+  +.+-.|++
T Consensus       335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~---t~~~dl~a~~nlnlA  411 (629)
T KOG2300|consen  335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL---TESIDLQAFCNLNLA  411 (629)
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh---hhHHHHHHHHHHhHH
Confidence            68899999988887765   3443       4678889999999999999999999999996   33333  45567789


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH-------
Q 021175          230 VSYVREGKLDKGISQFETAVKLQPGY----------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA-------  292 (316)
Q Consensus       230 ~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-------  292 (316)
                      .+|.+.|+-+.-.+.++.   +.|.+          ..+++..|...+.++++.||....++.++..  +.+-       
T Consensus       412 i~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~  486 (629)
T KOG2300|consen  412 ISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTAC  486 (629)
T ss_pred             HHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHH
Confidence            999998887665555443   34442          4577888888899999999999999999876  2332       


Q ss_pred             -HHHHHHHHhhCCCCCCC
Q 021175          293 -RPRRDALKDRVPLYKGV  309 (316)
Q Consensus       293 -~~~l~~l~~~~~~~~~A  309 (316)
                       ...++.+-.-+|+..++
T Consensus       487 ~LvLLs~v~lslgn~~es  504 (629)
T KOG2300|consen  487 SLVLLSHVFLSLGNTVES  504 (629)
T ss_pred             HHHHHHHHHHHhcchHHH
Confidence             33445566666665443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.74  E-value=0.015  Score=41.38  Aligned_cols=65  Identities=20%  Similarity=0.191  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCH
Q 021175          204 TKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY--VTAWNNLGDAYEKKKDL  272 (316)
Q Consensus       204 ~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~  272 (316)
                      +..+++.++    .+|++..+.+.+|..+...|++++|++.+-+.++.++++  ..+.-.+-.++...|.-
T Consensus         8 ~~al~~~~a----~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    8 IAALEAALA----ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHH----HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHH----cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            344555555    466666777777777777777777777777777666554  33444444444444443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.71  E-value=0.1  Score=46.84  Aligned_cols=131  Identities=14%  Similarity=0.203  Sum_probs=103.5

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hcCCC---------------
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGD----ASATEYFELGAVMLRRKFYPAATKYLLQAIE-KWDGD---------------  217 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~---------------  217 (316)
                      +-.-..|.++.|...+.++...++    ..+...+..+......|+..+|+..++..+. .....               
T Consensus       154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (352)
T PF02259_consen  154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE  233 (352)
T ss_pred             HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc
Confidence            334478999999999999888653    2577888899999999999999999998888 22110               


Q ss_pred             --------------CccHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------
Q 021175          218 --------------DQDLAQVYNALGVSYVRE------GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD------  271 (316)
Q Consensus       218 --------------~p~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------  271 (316)
                                    ....+.++..+|......      ++.+++++.|+++++.+|+...+|+.+|..+...=+      
T Consensus       234 ~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~  313 (352)
T PF02259_consen  234 SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREK  313 (352)
T ss_pred             ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcc
Confidence                          122356777788877777      899999999999999999999999999987765311      


Q ss_pred             -----------HHHHHHHHHHHHhcCCC
Q 021175          272 -----------LKSALKAFEEVLLFDPN  288 (316)
Q Consensus       272 -----------~~~A~~~~~~al~~~p~  288 (316)
                                 ...|+..|-+++...++
T Consensus       314 ~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  314 EESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                       13588999999998887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.70  E-value=0.068  Score=43.29  Aligned_cols=100  Identities=16%  Similarity=-0.008  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHH----
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP--GYVT----  257 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~----  257 (316)
                      -.++..+|..|.+.|+.++|++.|.++.+.... .......+.++-.+....+++.....+..++-..-.  .+..    
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            468899999999999999999999998885321 234567788888899999999999999999887543  3333    


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175          258 AWNNLGDAYEKKKDLKSALKAFEEVLL  284 (316)
Q Consensus       258 ~~~~lg~~~~~~g~~~~A~~~~~~al~  284 (316)
                      ....-|..+...++|.+|...|-.+..
T Consensus       115 lk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  115 LKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            344567778889999999999876654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.70  E-value=0.3  Score=41.12  Aligned_cols=119  Identities=15%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDAS------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSY  232 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~  232 (316)
                      +.+.+.++|++.|++++..-.+.      .+.+-..++++.+..++++|-..+.+-.-...+  ..+.....+...-.+|
T Consensus       121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~  200 (308)
T KOG1585|consen  121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY  200 (308)
T ss_pred             hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence            34555666666666665533221      234445556666666666666666555543222  1222233344344445


Q ss_pred             HHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175          233 VREGKLDKGISQFETAVKLQ----PGYVTAWNNLGDAYEKKKDLKSALKAFE  280 (316)
Q Consensus       233 ~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~  280 (316)
                      ....+|..|..+++...++.    |++..+.-+|-..| ..||.++..+.+.
T Consensus       201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            55667777777777766543    34445555554443 4566666555443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.60  E-value=0.042  Score=45.94  Aligned_cols=91  Identities=14%  Similarity=0.053  Sum_probs=53.0

Q ss_pred             CChHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHHHHcCCHHH-------HHHHHHHHHHhCCC------cHHHHHH
Q 021175          198 KFYPAATKYLLQAIEKWDG---DDQDLAQVYNALGVSYVREGKLDK-------GISQFETAVKLQPG------YVTAWNN  261 (316)
Q Consensus       198 g~~~~A~~~~~~al~~~~~---~~p~~~~~~~~lg~~~~~~g~~~~-------A~~~~~~al~~~p~------~~~~~~~  261 (316)
                      ..+++|++.|.-|+-...-   .....+..+..+|.+|..+|+.++       |.+.|+++++....      .....+.
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            3445555555544432211   111335556666777776666443       44444444443221      2567788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175          262 LGDAYEKKKDLKSALKAFEEVLLFDPN  288 (316)
Q Consensus       262 lg~~~~~~g~~~~A~~~~~~al~~~p~  288 (316)
                      +|.++.+.|++++|..+|.+++.....
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            888888999999999999888875433

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.57  E-value=0.0072  Score=52.19  Aligned_cols=69  Identities=7%  Similarity=0.036  Sum_probs=63.4

Q ss_pred             HHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 021175          159 QVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVS  231 (316)
Q Consensus       159 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~  231 (316)
                      .....|+.++|...|+.+++..|++++++...|......++.-+|-++|-+|+.    +.|.+.+++.|.+..
T Consensus       125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt----isP~nseALvnR~RT  193 (472)
T KOG3824|consen  125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT----ISPGNSEALVNRART  193 (472)
T ss_pred             HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee----eCCCchHHHhhhhcc
Confidence            344799999999999999999999999999999999999999999999999999    799999998887644

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.036  Score=47.79  Aligned_cols=119  Identities=11%  Similarity=0.071  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHH
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY-VTAWNNLGD  264 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~  264 (316)
                      .-+.-+.-....|++.+|...+..+++    ..|++..+...++.+|...|+.++|...+...=....+. .......-.
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~----~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~  211 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQ----AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE  211 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHH----hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            344556667788999999999999999    688899999999999999999999988876532111111 111001112


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          265 AYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       265 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      .+.+.....+. ..+++.+..+|++.++...++..+...|+.++|
T Consensus       212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~A  255 (304)
T COG3118         212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAA  255 (304)
T ss_pred             HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            22333332222 345566788999999999999999999998765

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.52  E-value=0.024  Score=43.83  Aligned_cols=77  Identities=14%  Similarity=-0.026  Sum_probs=45.7

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 021175          192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD  271 (316)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  271 (316)
                      ..-...++.+++...+...--    +.|+.++....-|.++...|++++|+..+++..+-.+..+-+.-.++.|+..+||
T Consensus        18 ~~aL~~~d~~D~e~lLdALrv----LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        18 MYALRSADPYDAQAMLDALRV----LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHHhcCCHHHHHHHHHHHHH----hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            333345555666555554444    4666666666666666666666666666666666555556555666666666666


Q ss_pred             H
Q 021175          272 L  272 (316)
Q Consensus       272 ~  272 (316)
                      .
T Consensus        94 p   94 (153)
T TIGR02561        94 A   94 (153)
T ss_pred             h
Confidence            4

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK10941 hypothetical protein; Provisional

Probab=96.50  E-value=0.038  Score=47.77  Aligned_cols=76  Identities=13%  Similarity=0.000  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 021175          185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGD  264 (316)
Q Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  264 (316)
                      ....++-.++.+.++++.|..+.+..+.    +.|+++.-+...|.+|.++|.+..|...++.-++..|+++.+-.-...
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~----l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQ----FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            3566788889999999999999999999    799999999999999999999999999999999999999876554433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.49  E-value=0.0094  Score=55.03  Aligned_cols=85  Identities=16%  Similarity=0.159  Sum_probs=42.2

Q ss_pred             ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175          199 FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE---GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA  275 (316)
Q Consensus       199 ~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  275 (316)
                      ....|+..|.++++    ..|.....+.+.+.++++.   |+.-.|+.....|++++|....+++.|+.++..++++.+|
T Consensus       389 ~~~~~i~~~s~a~q----~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea  464 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQ----YVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA  464 (758)
T ss_pred             HHHHHHHHHHHHhh----hccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence            34445555555555    3444455555555444442   3444444445555555555555555555555555555555


Q ss_pred             HHHHHHHHhcCC
Q 021175          276 LKAFEEVLLFDP  287 (316)
Q Consensus       276 ~~~~~~al~~~p  287 (316)
                      +.+...+....|
T Consensus       465 l~~~~alq~~~P  476 (758)
T KOG1310|consen  465 LSCHWALQMSFP  476 (758)
T ss_pred             hhhHHHHhhcCc
Confidence            555544444444

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.46  E-value=0.029  Score=41.13  Aligned_cols=46  Identities=24%  Similarity=0.243  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      .+++.+.++..+.|..+...+.+|.-+.....|+++..-.++++.+
T Consensus        62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            5788999999999999888999888877777788888888887765

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.41  E-value=0.05  Score=50.11  Aligned_cols=90  Identities=8%  Similarity=0.113  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 021175          168 LSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK-LDKGISQFE  246 (316)
Q Consensus       168 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~  246 (316)
                      .-...|+++....+.+...|.+......+.+.+.+--..|.+++.    .+|+++..|..-+.-.+..+. .+.|...+.
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~----~Hp~~~dLWI~aA~wefe~n~ni~saRalfl  164 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLA----KHPNNPDLWIYAAKWEFEINLNIESARALFL  164 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence            455677778888888888888887777777778888888888888    578888888777776666665 777888888


Q ss_pred             HHHHhCCCcHHHHHH
Q 021175          247 TAVKLQPGYVTAWNN  261 (316)
Q Consensus       247 ~al~~~p~~~~~~~~  261 (316)
                      ++++.+|+++..|..
T Consensus       165 rgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  165 RGLRFNPDSPKLWKE  179 (568)
T ss_pred             HHhhcCCCChHHHHH
Confidence            888888887776643

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.041  Score=52.09  Aligned_cols=100  Identities=11%  Similarity=0.196  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG  263 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  263 (316)
                      .+.+-+.-.++.++|..+++.|...+...+.  .+...+....+++.||....+.|.|.+++++|-+.+|.++-.....-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            4556667778889999999999999985443  23344667788999999999999999999999999999988888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhc
Q 021175          264 DAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       264 ~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      .+....|..++|+.+..+....
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhh
Confidence            8888889999999888877654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.38  E-value=0.0085  Score=35.42  Aligned_cols=28  Identities=21%  Similarity=0.186  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEK  213 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~  213 (316)
                      ++.++|.+|...|++++|.++++++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4555555555555555555555555553

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.43  Score=44.10  Aligned_cols=138  Identities=9%  Similarity=0.009  Sum_probs=100.4

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCcc----------HHHHHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDA---SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD----------LAQVYNA  227 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~----------~~~~~~~  227 (316)
                      ..-+.++.|+..|..+.+.-..   .+.+..+++..|.+.|+-+.-    .++++.   +.|.          .+.+++-
T Consensus       378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~----y~~ld~---i~p~nt~s~ssq~l~a~~~~v  450 (629)
T KOG2300|consen  378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDL----YKALDL---IGPLNTNSLSSQRLEASILYV  450 (629)
T ss_pred             hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHH----HHHHHh---cCCCCCCcchHHHHHHHHHHH
Confidence            3778899999999999886543   255677899999998775433    334443   2332          3556777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH------HH
Q 021175          228 LGVSYVREGKLDKGISQFETAVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR------PR  295 (316)
Q Consensus       228 lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------~~  295 (316)
                      .|...+.++++.||...+++.++.....      +.....||.+....|+..++.+..+-++++....++..      ..
T Consensus       451 ~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si  530 (629)
T KOG2300|consen  451 YGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSI  530 (629)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHH
Confidence            8888999999999999999999876221      34566789999999999999998888887755443332      23


Q ss_pred             HHHHHhhCCC
Q 021175          296 RDALKDRVPL  305 (316)
Q Consensus       296 l~~l~~~~~~  305 (316)
                      +..+++..|+
T Consensus       531 ~~~L~~a~g~  540 (629)
T KOG2300|consen  531 LTDLYQALGE  540 (629)
T ss_pred             HHHHHHHhCc
Confidence            4666777766

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.29  E-value=0.11  Score=40.82  Aligned_cols=85  Identities=14%  Similarity=-0.028  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175          222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD  301 (316)
Q Consensus       222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~  301 (316)
                      ......+..+-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+-.|..+.+.-.++.+..
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            44566667777788999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hCCCC
Q 021175          302 RVPLY  306 (316)
Q Consensus       302 ~~~~~  306 (316)
                      .++|.
T Consensus        90 ~~~D~   94 (160)
T PF09613_consen   90 ALGDP   94 (160)
T ss_pred             HcCCh
Confidence            88874

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.28  E-value=0.011  Score=34.84  Aligned_cols=29  Identities=21%  Similarity=0.494  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 021175          223 QVYNALGVSYVREGKLDKGISQFETAVKL  251 (316)
Q Consensus       223 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  251 (316)
                      .++.++|.+|..+|++++|.+++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45667777777777777777777777654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.20  E-value=0.65  Score=42.62  Aligned_cols=122  Identities=11%  Similarity=0.025  Sum_probs=82.7

Q ss_pred             HHHHHHhhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHHhc--------CCCCccHHHHH
Q 021175          157 IRQVLVRRE-LDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATK--YLLQAIEKW--------DGDDQDLAQVY  225 (316)
Q Consensus       157 ~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~--------~~~~p~~~~~~  225 (316)
                      +.++.+.|. -++|+..++.+++..|.+..+-+..-.  +-...|.+|..  .+.+.+.+.        +++.-.+.+.-
T Consensus       386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia  463 (549)
T PF07079_consen  386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA  463 (549)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence            445556776 678999999999988887654332211  11222333321  122222210        11223455566


Q ss_pred             HHHHH--HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          226 NALGV--SYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE  281 (316)
Q Consensus       226 ~~lg~--~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  281 (316)
                      +.|+.  .++.+|+|.++.-+-.=..+++| .+.++..+|.|.....+|++|..++.+
T Consensus       464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            66654  46789999999999988999999 899999999999999999999999975

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.17  E-value=0.14  Score=44.80  Aligned_cols=127  Identities=14%  Similarity=0.116  Sum_probs=95.7

Q ss_pred             HHhhhHHHHHHHHHHHHHcC----CCC----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCC------CCcc----H
Q 021175          161 LVRRELDLSAKELQEQVRSG----DAS----ATEYFELGAVMLRRK-FYPAATKYLLQAIEKWDG------DDQD----L  221 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~------~~p~----~  221 (316)
                      ..+|+.+.|...+.|+-...    |+.    ++.+++.|......+ ++++|..+++++.+..+.      ..|+    .
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            37999999999999986644    332    568889999999999 999999999999998532      2222    2


Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175          222 AQVYNALGVSYVREGKLD---KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP  287 (316)
Q Consensus       222 ~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  287 (316)
                      ..++..++.+|...+.++   +|....+.+-.-.|+.+..+...=.+..+.++.+++.+.+.+.+..-+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            456677899998887765   455555666666788787775555555558999999999999887544

It is also involved in sporulation [].

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.16  E-value=0.14  Score=38.91  Aligned_cols=83  Identities=14%  Similarity=0.134  Sum_probs=63.9

Q ss_pred             CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 021175          181 DASATEYFELGAVMLRRKF---YPAATKYLLQAIEKWDGDDQ-DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV  256 (316)
Q Consensus       181 p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  256 (316)
                      .-.....++++.++....+   -.+.+..++..++.   .+| ..-++.+.|+..+++.|+|+++..+.+..++..|++.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~---~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS---AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh---cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence            3356678889998887654   45678888888851   233 4567888899999999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q 021175          257 TAWNNLGDAY  266 (316)
Q Consensus       257 ~~~~~lg~~~  266 (316)
                      ++.-..-.+.
T Consensus       106 Qa~~Lk~~ie  115 (149)
T KOG3364|consen  106 QALELKETIE  115 (149)
T ss_pred             HHHHHHHHHH
Confidence            8765443333

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.16  E-value=0.069  Score=39.17  Aligned_cols=89  Identities=9%  Similarity=0.060  Sum_probs=72.1

Q ss_pred             HHHHhhhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcC----C-------hHHHHHHHHHHHHhcCCCCccHHHH
Q 021175          159 QVLVRRELDLSAKELQEQVRSGDASA---TEYFELGAVMLRRK----F-------YPAATKYLLQAIEKWDGDDQDLAQV  224 (316)
Q Consensus       159 ~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g----~-------~~~A~~~~~~al~~~~~~~p~~~~~  224 (316)
                      .++.+|++-+|++..++.+...+++.   ..+..-|.++....    +       .-.|+++|.++..    +.|..+..
T Consensus         5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~----Lsp~~A~~   80 (111)
T PF04781_consen    5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE----LSPDSAHS   80 (111)
T ss_pred             HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc----cChhHHHH
Confidence            35589999999999999999888765   67778888876542    2       2357888888888    79999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 021175          225 YNALGVSYVREGKLDKGISQFETAVKL  251 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~al~~  251 (316)
                      .+.+|.-+-...-|+++..-.++++.+
T Consensus        81 L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   81 LFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            999998877777888888888888865

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.13  E-value=0.14  Score=49.29  Aligned_cols=132  Identities=21%  Similarity=0.242  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHcC---
Q 021175          166 LDLSAKELQEQVRSGDASATEYFELGAVMLRR-----KFYPAATKYLLQAIEKWDG-DDQDLAQVYNALGVSYVREG---  236 (316)
Q Consensus       166 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~-~~p~~~~~~~~lg~~~~~~g---  236 (316)
                      ...+...++.+-+.  .+..+...+|.++..-     +|.+.|+.+++.+.+.+.. .....+.+.+.+|.+|.+..   
T Consensus       228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence            45677777766554  4677788888888764     7899999999999871000 11225557889999998843   


Q ss_pred             --CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175          237 --KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK---DLKSALKAFEEVLLFDPNNKVARPRRDALKDRV  303 (316)
Q Consensus       237 --~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~  303 (316)
                        +++.|..+|.++-+.  +++.+.+.+|.++..-.   +...|.++|..|.+  -.+..+...++.++..-
T Consensus       306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G  373 (552)
T KOG1550|consen  306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELG  373 (552)
T ss_pred             cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhC
Confidence              788999999999875  45678889999998765   67899999999876  46788899998887654

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.11  E-value=0.085  Score=48.65  Aligned_cols=75  Identities=12%  Similarity=0.088  Sum_probs=37.0

Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCChhHH
Q 021175          219 QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD-LKSALKAFEEVLLFDPNNKVAR  293 (316)
Q Consensus       219 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~  293 (316)
                      +.+...|.+......+.+.+.+--..|.+++..+|++++.|..-+.-.+.-+. .+.|...+.++++.+|+++..|
T Consensus       102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw  177 (568)
T KOG2396|consen  102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW  177 (568)
T ss_pred             CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence            33444444444444444445555555555555555555555555544444333 4555555555555555555444

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.08  E-value=0.13  Score=43.07  Aligned_cols=92  Identities=15%  Similarity=0.169  Sum_probs=62.3

Q ss_pred             hhhHHHHHHHHHHHHHc----C-C--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---------CCccHHHHHH
Q 021175          163 RRELDLSAKELQEQVRS----G-D--ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---------DDQDLAQVYN  226 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~----~-p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------~~p~~~~~~~  226 (316)
                      ...+++|++.|.-++-.    . +  ..+..+..+|.+|...|+.+....++++|++.+..         ..-+.....+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            34455566555554431    1 1  23667888999999999866555555555543211         1224567888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 021175          227 ALGVSYVREGKLDKGISQFETAVKLQPG  254 (316)
Q Consensus       227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~  254 (316)
                      .+|.+..+.|++++|.++|.+++.....
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999985443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.08  E-value=0.26  Score=44.67  Aligned_cols=81  Identities=12%  Similarity=0.078  Sum_probs=64.4

Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----------------------CCccH---HHHHHHHH
Q 021175          175 EQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG----------------------DDQDL---AQVYNALG  229 (316)
Q Consensus       175 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------------------~~p~~---~~~~~~lg  229 (316)
                      ..++.+|-+.+++..++.++..+|+.+.|.+..++|+-.++.                      ..+.+   -.+.+...
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            346789999999999999999999999999999999864320                      11222   33445566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-c
Q 021175          230 VSYVREGKLDKGISQFETAVKLQPG-Y  255 (316)
Q Consensus       230 ~~~~~~g~~~~A~~~~~~al~~~p~-~  255 (316)
                      ....++|-+..|.++.+-.+.++|. |
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~D  137 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDED  137 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCC
Confidence            7788899999999999999999998 5

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.05  E-value=0.053  Score=38.90  Aligned_cols=58  Identities=22%  Similarity=0.251  Sum_probs=37.1

Q ss_pred             HHcCChHHHHHHHHHHHHhcCCCCc-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 021175          195 LRRKFYPAATKYLLQAIEKWDGDDQ-----DLAQVYNALGVSYVREGKLDKGISQFETAVKLQ  252 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  252 (316)
                      .+.|+|.+|.+.+.+..+.......     ....+..++|.++...|++++|++.+++++++.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4566777776666666654322111     234556677777777888888888888877754

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.03  E-value=0.038  Score=50.67  Aligned_cols=130  Identities=9%  Similarity=0.070  Sum_probs=100.8

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      ....|+...|-+....+++..|..++.-...+.+....|+|+.|.+....+-..   +... ..+.--+-...+..|+++
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~---~~s~-~~~~~~~~r~~~~l~r~~  374 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI---IGTT-DSTLRCRLRSLHGLARWR  374 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh---hcCC-chHHHHHHHhhhchhhHH
Confidence            446788888888999999999999999999999999999999998887665553   1222 222333445577889999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR  293 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  293 (316)
                      +|...-+-.+...-.++++..--+..-.++|-+++|..++++.+.++|.....+
T Consensus       375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~  428 (831)
T PRK15180        375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW  428 (831)
T ss_pred             HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence            999988888876667777766666666778889999999999999998654444

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.02  E-value=0.4  Score=42.81  Aligned_cols=112  Identities=15%  Similarity=0.123  Sum_probs=86.9

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175          170 AKELQEQVRSGDASATEYFELGAVMLRRKF------------YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK  237 (316)
Q Consensus       170 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~  237 (316)
                      ...+.+.++.+|++.++|..+.......-.            .+.-+..|++|++    .+|++...+..+=....+..+
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~----~np~~~~L~l~~l~~~~~~~~   80 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALK----HNPDSERLLLGYLEEGEKVWD   80 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhCC
Confidence            356788899999999999999876655432            4567889999999    588888888877777788889


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhc
Q 021175          238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEK---KKDLKSALKAFEEVLLF  285 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~  285 (316)
                      .++..+-+++++..+|++...|..+-.....   .-.+++-...|.++++.
T Consensus        81 ~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   81 SEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            9999999999999999998877655443332   33567777777777764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.01  E-value=0.11  Score=50.76  Aligned_cols=134  Identities=13%  Similarity=0.110  Sum_probs=89.4

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|..++|...|++.-+        +-.+-..|...|.+++|.+..+.-      ..-.--..|++.+.-+...++.+.|
T Consensus       812 eLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~------DRiHLr~Tyy~yA~~Lear~Di~~A  877 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETK------DRIHLRNTYYNYAKYLEARRDIEAA  877 (1416)
T ss_pred             HHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhc------cceehhhhHHHHHHHHHhhccHHHH
Confidence            44555555555555432        233445566677777776654322      1223456889999999999999999


Q ss_pred             HHHHHHHH----------HhCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------
Q 021175          242 ISQFETAV----------KLQPG----------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLF----------------  285 (316)
Q Consensus       242 ~~~~~~al----------~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------  285 (316)
                      +++|+++-          .-+|.          +...|..-|......|+.+.|+.+|..+-..                
T Consensus       878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kA  957 (1416)
T KOG3617|consen  878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKA  957 (1416)
T ss_pred             HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHH
Confidence            99998853          22333          3456677888899999999999999887543                


Q ss_pred             -----CCCChhHHHHHHHHHhhCCCCCCC
Q 021175          286 -----DPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       286 -----~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                           ...+..+-+.++..|...|+..+|
T Consensus       958 a~iA~esgd~AAcYhlaR~YEn~g~v~~A  986 (1416)
T KOG3617|consen  958 ARIAEESGDKAACYHLARMYENDGDVVKA  986 (1416)
T ss_pred             HHHHHhcccHHHHHHHHHHhhhhHHHHHH
Confidence                 234555666777777777766443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.92  E-value=0.016  Score=48.12  Aligned_cols=57  Identities=23%  Similarity=0.257  Sum_probs=36.2

Q ss_pred             HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175          195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  255 (316)
                      .+.++.+.|.+.|.++++    +.|+...-|+.+|....+.|+.+.|.+.|++.++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~----lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALE----LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhh----cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            345566666666666666    466666666666666666666666666666666666654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.83  E-value=0.15  Score=39.49  Aligned_cols=74  Identities=11%  Similarity=-0.000  Sum_probs=66.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      ..++.+++...+...--..|+.+.....-|.++...|+|++|+..++...+    ..+..+.+.-.++.|+..+||.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~----~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS----SAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc----cCCCchHHHHHHHHHHHhcCChH
Confidence            578899999999988889999999999999999999999999999999998    46677778888899999998875

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=95.81  E-value=0.0073  Score=53.07  Aligned_cols=86  Identities=15%  Similarity=0.171  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 021175          221 LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALK  300 (316)
Q Consensus       221 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~  300 (316)
                      -...+.+++.+-...+.+..|+..-..+++.+++...+++..++.+....++++|++.++.+....|++......+....
T Consensus       274 r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~  353 (372)
T KOG0546|consen  274 RFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR  353 (372)
T ss_pred             ccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence            34566778888899999999999999999989999999999999999999999999999999999999998888887777


Q ss_pred             hhCCCC
Q 021175          301 DRVPLY  306 (316)
Q Consensus       301 ~~~~~~  306 (316)
                      +...++
T Consensus       354 ~~~~~~  359 (372)
T KOG0546|consen  354 QKKKQY  359 (372)
T ss_pred             hHHHHH
Confidence            666655

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.75  E-value=0.32  Score=49.32  Aligned_cols=128  Identities=17%  Similarity=0.124  Sum_probs=98.1

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHc----C---ChHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRR----K---FYPAATKYLLQAIEKWDGDDQDLAQVYNALG  229 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~----g---~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg  229 (316)
                      ++..+.|++|+..|++.-...|..   -++.+..|.....+    |   .+++|+..|++.-.     .|.-+-=|...+
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  559 (932)
T PRK13184        485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-----GVGAPLEYLGKA  559 (932)
T ss_pred             HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-----CCCCchHHHhHH
Confidence            447889999999999999999865   45778888877653    2   46777777777765     677777888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175          230 VSYVREGKLDKGISQFETAVKLQPGYVTAW-------NNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP  294 (316)
Q Consensus       230 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  294 (316)
                      .+|.++|+++|-+++|.-|++..|+++..-       +.+=++...  +...|....--++..-|.......
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  629 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKISSRE  629 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccccchH
Confidence            999999999999999999999999986533       333333332  335677888888999898655544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.59  E-value=0.19  Score=42.99  Aligned_cols=78  Identities=18%  Similarity=0.218  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      .....++=..+...++++.|..+.++.+.++|+++.-+...|.+|.++|.+.-|++.++..++.-|+++.+-.....+
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            345556677888999999999999999999999999999999999999999999999999999999988776554443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.63  Score=39.69  Aligned_cols=136  Identities=13%  Similarity=0.100  Sum_probs=100.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYP-AATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..+..+-++++.+.++.+|.+-..|...-.+....|++. .-++..++.+.    .+..+..+|...-.+...-+.++.-
T Consensus        91 ~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~----~DaKNYHaWshRqW~~r~F~~~~~E  166 (318)
T KOG0530|consen   91 MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLD----DDAKNYHAWSHRQWVLRFFKDYEDE  166 (318)
T ss_pred             HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHh----ccccchhhhHHHHHHHHHHhhHHHH
Confidence            345667777888888888888888888877777777777 66777777777    5777777777777777777888888


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEK-KK-----DLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~-~g-----~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      +.+..+.++.+-.+-.+|...=.+... .|     ..+.-+.+..+.+.+.|++..+|..|.-++..
T Consensus       167 L~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  167 LAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             HHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            888888887776666666543222211 22     23556678889999999999999999888775

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.39  E-value=0.36  Score=46.03  Aligned_cols=94  Identities=12%  Similarity=0.062  Sum_probs=81.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 021175          155 FVIRQVLVRRELDLSAKELQEQVRSGDAS------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNAL  228 (316)
Q Consensus       155 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~l  228 (316)
                      ..+...++.++|..+++.|...++.-|.+      +....++..+|....+.|.|.+++++|-+    .+|.++-.....
T Consensus       359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~----~d~~~~l~q~~~  434 (872)
T KOG4814|consen  359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE----VDRQSPLCQLLM  434 (872)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh----hccccHHHHHHH
Confidence            33445558999999999999999877754      56778899999999999999999999999    799999988888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC
Q 021175          229 GVSYVREGKLDKGISQFETAVKLQ  252 (316)
Q Consensus       229 g~~~~~~g~~~~A~~~~~~al~~~  252 (316)
                      -.+....|.-++|+....+.....
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhhh
Confidence            889999999999999988877643

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.18  E-value=0.28  Score=42.53  Aligned_cols=67  Identities=19%  Similarity=0.277  Sum_probs=59.5

Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          219 QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       219 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      .....++..++..+...|+++.+++.+++.+..+|.+-..|..+-..|...|+...|+..|++.-+.
T Consensus       150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3556788888999999999999999999999999999999999999999999999999999887663

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.11  E-value=0.28  Score=35.05  Aligned_cols=57  Identities=18%  Similarity=0.115  Sum_probs=46.2

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 021175          160 VLVRRELDLSAKELQEQVRSGDA---------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG  216 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  216 (316)
                      .+..+++.+|.+.+.+..+....         ...+..++|.++...|++++|++.+++++++..+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            45789999998888887764321         2457788999999999999999999999997554

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.07  E-value=0.097  Score=45.41  Aligned_cols=62  Identities=18%  Similarity=0.153  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      |..+|++|+.+.|++...|+.+|.++...|+.-+|+-+|-+++....-.+.+..++..+..+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            44555666666666666666666666556666666655555555444445555555555544

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.97  E-value=1.4  Score=39.31  Aligned_cols=120  Identities=8%  Similarity=-0.009  Sum_probs=92.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH---HHcCCHH
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY---VREGKLD  239 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~---~~~g~~~  239 (316)
                      ..-.+..+..+++|++.+|++...+..+-....+..+.++..+-+++++.    .+|++...|...=...   +..-.++
T Consensus        44 ~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~----~~~~~~~LW~~yL~~~q~~~~~f~v~  119 (321)
T PF08424_consen   44 RALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF----KNPGSPELWREYLDFRQSNFASFTVS  119 (321)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----HCCCChHHHHHHHHHHHHHhccCcHH
Confidence            44556788999999999999999999888888888899999999999999    5888777775432222   2233577


Q ss_pred             HHHHHHHHHHHhCCC------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175          240 KGISQFETAVKLQPG------------------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD  286 (316)
Q Consensus       240 ~A~~~~~~al~~~p~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  286 (316)
                      +....|.++++.-..                  ...+..++.....+.|..+.|+..++-.++++
T Consensus       120 ~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  120 DVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            788888777763210                  13455677777889999999999999999986

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=94.96  E-value=1  Score=42.75  Aligned_cols=122  Identities=7%  Similarity=-0.072  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-PGYVTAWNNL  262 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  262 (316)
                      -..|..........|+++...-.|++++-    .-....+.|...+.-....|+.+-|-..+..+.++. |+.+..+..-
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli----~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~  372 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLI----PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE  372 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHh----HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence            45677777777889999999999999998    566788899999999999999999999999999875 6678888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          263 GDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       263 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +..-...|+++.|...+++..+--|+...+-.....+..+.|+.+++
T Consensus       373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~  419 (577)
T KOG1258|consen  373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDA  419 (577)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhh
Confidence            88888999999999999999988899888887777788888876654

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=94.92  E-value=0.11  Score=53.20  Aligned_cols=148  Identities=16%  Similarity=0.121  Sum_probs=111.0

Q ss_pred             HHHhhhHHHHHH------HHHHH-HHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCccHHHHHHHH
Q 021175          160 VLVRRELDLSAK------ELQEQ-VRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG----DDQDLAQVYNAL  228 (316)
Q Consensus       160 ~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~p~~~~~~~~l  228 (316)
                      ....+.+.++.+      .+... -...|+....+..++..+...|++++|+..-+++.-....    ..|+....+.++
T Consensus       942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen  942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred             hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence            344555665555      44422 2356788899999999999999999999999888754332    467888899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------ChhH
Q 021175          229 GVSYVREGKLDKGISQFETAVKL--------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN--------NKVA  292 (316)
Q Consensus       229 g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a  292 (316)
                      +...+..++...|...+.++..+        .|.-+....+++.++...++++.|+++.+.|+..+-.        ....
T Consensus      1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred             HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence            99999999999999999998875        3566777789999999999999999999999986432        2334


Q ss_pred             HHHHHHHHhhCCCCC
Q 021175          293 RPRRDALKDRVPLYK  307 (316)
Q Consensus       293 ~~~l~~l~~~~~~~~  307 (316)
                      +..++++....++++
T Consensus      1102 ~~~~a~l~~s~~dfr 1116 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFR 1116 (1236)
T ss_pred             HHHHHHHHhhhHHHH
Confidence            445555555554443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.92  E-value=1.4  Score=37.69  Aligned_cols=102  Identities=16%  Similarity=0.154  Sum_probs=65.6

Q ss_pred             hhhHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cC----
Q 021175          163 RRELD-LSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR-EG----  236 (316)
Q Consensus       163 ~~~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~-~g----  236 (316)
                      .|+.. .-++..++++..+..+-.+|...-.+...-+.|+.-+.+..+.++    .+-.+-.+|+..=.+... .|    
T Consensus       125 l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle----~Di~NNSAWN~Ryfvi~~~~~~~~~  200 (318)
T KOG0530|consen  125 LGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLE----EDIRNNSAWNQRYFVITNTKGVISK  200 (318)
T ss_pred             hcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH----HhhhccchhheeeEEEEeccCCccH
Confidence            34554 556677777777777777777777777777778888887777777    344444555443222222 11    


Q ss_pred             -CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 021175          237 -KLDKGISQFETAVKLQPGYVTAWNNLGDAYEK  268 (316)
Q Consensus       237 -~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  268 (316)
                       ..+.-+.+..+.+.+.|++..+|..|.-++..
T Consensus       201 ~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  201 AELERELNYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             HHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence             23344566677777888888888877776665

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.72  E-value=0.18  Score=46.88  Aligned_cols=92  Identities=10%  Similarity=-0.047  Sum_probs=78.9

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRR---KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK  237 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~  237 (316)
                      +..+.+..++..|.+++...|.....+.+.+.++++.   |+--.|+.--..|++    ++|....+++.|+.++...++
T Consensus       385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alr----ln~s~~kah~~la~aL~el~r  460 (758)
T KOG1310|consen  385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALR----LNPSIQKAHFRLARALNELTR  460 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhcc----CChHHHHHHHHHHHHHHHHhh
Confidence            3567788899999999999999999999999999886   444556666667777    799999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcH
Q 021175          238 LDKGISQFETAVKLQPGYV  256 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~  256 (316)
                      +.+|++....+....|.+.
T Consensus       461 ~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  461 YLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHhhhhHHHHhhcCchhh
Confidence            9999999988888888553

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.57  E-value=0.46  Score=32.51  Aligned_cols=61  Identities=11%  Similarity=0.120  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH---HHHHHcCCHHHHHHHHHHHHhc
Q 021175          225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG---DAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      ...-|.-++..++.++|+..++++++..++..+.+..+|   .+|...|++.+.+++-.+-+++
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455566778888888888888888777665554444   5677788888877766554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.55  E-value=1  Score=36.94  Aligned_cols=73  Identities=22%  Similarity=0.245  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHH
Q 021175          200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG----YVTAWNNLGDAYEKKKDLKSA  275 (316)
Q Consensus       200 ~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A  275 (316)
                      -++|...|-++-..   ..-++++..+.+|..|. ..+.++|+..+.+++++.+.    +++.+..|+.+|.++|++++|
T Consensus       122 d~~A~~~fL~~E~~---~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  122 DQEALRRFLQLEGT---PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             cHHHHHHHHHHcCC---CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            35566666555441   12255667777776554 66777788888888876543    367777788888888887777


Q ss_pred             H
Q 021175          276 L  276 (316)
Q Consensus       276 ~  276 (316)
                      .
T Consensus       198 Y  198 (203)
T PF11207_consen  198 Y  198 (203)
T ss_pred             h
Confidence            5

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.53  E-value=1.1  Score=40.76  Aligned_cols=77  Identities=14%  Similarity=0.140  Sum_probs=63.9

Q ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCC------------c---HHHHHHHHHHHH
Q 021175          217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL--------------QPG------------Y---VTAWNNLGDAYE  267 (316)
Q Consensus       217 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~p~------------~---~~~~~~lg~~~~  267 (316)
                      .+|.+...+..++.++..+|+.+.|.+.+++|+-.              ++.            +   ..+.+.......
T Consensus        35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~  114 (360)
T PF04910_consen   35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG  114 (360)
T ss_pred             HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999732              111            1   235667778888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCC-ChhHH
Q 021175          268 KKKDLKSALKAFEEVLLFDPN-NKVAR  293 (316)
Q Consensus       268 ~~g~~~~A~~~~~~al~~~p~-~~~a~  293 (316)
                      +.|-+.-|.++.+-.+.++|. |+-.-
T Consensus       115 ~RG~~rTAlE~~KlLlsLdp~~DP~g~  141 (360)
T PF04910_consen  115 RRGCWRTALEWCKLLLSLDPDEDPLGV  141 (360)
T ss_pred             hcCcHHHHHHHHHHHHhcCCCCCcchh
Confidence            999999999999999999999 66443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.41  E-value=0.18  Score=29.03  Aligned_cols=30  Identities=20%  Similarity=0.357  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCC
Q 021175          224 VYNALGVSYVREGKLDKGISQ--FETAVKLQP  253 (316)
Q Consensus       224 ~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p  253 (316)
                      .++.+|..+..+|++++|++.  |+-+..+++
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            344455555555555555555  224444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.37  E-value=0.059  Score=28.41  Aligned_cols=20  Identities=20%  Similarity=0.245  Sum_probs=8.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHH
Q 021175          226 NALGVSYVREGKLDKGISQF  245 (316)
Q Consensus       226 ~~lg~~~~~~g~~~~A~~~~  245 (316)
                      +++|.++...|++++|...+
T Consensus         5 ~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHH
Confidence            34444444444444444433

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.36  E-value=1.9  Score=34.53  Aligned_cols=103  Identities=9%  Similarity=0.063  Sum_probs=76.2

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCC--C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175          161 LVRRELDLSAKELQEQVRSGDA--S--ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~--~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g  236 (316)
                      ..+|+...|+..|.+.-...|-  .  -.+...-+.++...|.|++-....+..-.   .-+|.-..+.-.||..-++.|
T Consensus       105 a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~---d~n~mR~sArEALglAa~kag  181 (221)
T COG4649         105 AQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG---DGNPMRHSAREALGLAAYKAG  181 (221)
T ss_pred             hhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC---CCChhHHHHHHHHhHHHHhcc
Confidence            3899999999999997665442  1  23455666778889999987766655433   146777778888999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175          237 KLDKGISQFETAVKLQPGYVTAWNNLGDAYE  267 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  267 (316)
                      ++.+|.+.|++... +.+.+..-.+.+++..
T Consensus       182 d~a~A~~~F~qia~-Da~aprnirqRAq~ml  211 (221)
T COG4649         182 DFAKAKSWFVQIAN-DAQAPRNIRQRAQIML  211 (221)
T ss_pred             chHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence            99999999999877 5555555555555544

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.28  E-value=0.13  Score=44.78  Aligned_cols=82  Identities=6%  Similarity=0.151  Sum_probs=44.3

Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 021175          175 EQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNA-LGVSYVREGKLDKGISQFETAVKLQP  253 (316)
Q Consensus       175 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p  253 (316)
                      ++-...|+++..|...+....+.|-|.+--..|.++++    .+|.+.+.|.. -+.-+...++.+.+...+.++++.+|
T Consensus        98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~----khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~  173 (435)
T COG5191          98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLT----KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS  173 (435)
T ss_pred             hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence            33344455555555555555555555555555555555    45555555544 33344455555555555555555555


Q ss_pred             CcHHHHH
Q 021175          254 GYVTAWN  260 (316)
Q Consensus       254 ~~~~~~~  260 (316)
                      +.+..|+
T Consensus       174 ~~p~iw~  180 (435)
T COG5191         174 RSPRIWI  180 (435)
T ss_pred             CCchHHH
Confidence            5555443

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.15  E-value=2.4  Score=38.44  Aligned_cols=146  Identities=16%  Similarity=0.077  Sum_probs=99.4

Q ss_pred             HhhhHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGD---------ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGV  230 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~  230 (316)
                      .++++.+|.+.-...+..-.         -.+..|+.+..++...|+...-...+..-+....-  .....+...+.+=.
T Consensus       138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr  217 (493)
T KOG2581|consen  138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR  217 (493)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence            56777777776666544211         12567888888888889877766666665553221  22334555666788


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh--CC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH------HHHHHHH
Q 021175          231 SYVREGKLDKGISQFETAVKL--QP--GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR------PRRDALK  300 (316)
Q Consensus       231 ~~~~~g~~~~A~~~~~~al~~--~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------~~l~~l~  300 (316)
                      .|...+.|++|.+...+..--  +.  ..+...+.+|.+..-+++|..|.+++-+|++..|++...-      ..+-.+.
T Consensus       218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~  297 (493)
T KOG2581|consen  218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVE  297 (493)
T ss_pred             HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHH
Confidence            899999999999988776621  11  2255677899999999999999999999999999853322      2223345


Q ss_pred             hhCCCCC
Q 021175          301 DRVPLYK  307 (316)
Q Consensus       301 ~~~~~~~  307 (316)
                      ..+|++.
T Consensus       298 ll~geiP  304 (493)
T KOG2581|consen  298 LLLGEIP  304 (493)
T ss_pred             HHcCCCc
Confidence            5566654

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.01  E-value=0.32  Score=49.34  Aligned_cols=108  Identities=16%  Similarity=0.217  Sum_probs=81.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCcHHHHHH
Q 021175          189 ELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE----G---KLDKGISQFETAVKLQPGYVTAWNN  261 (316)
Q Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~  261 (316)
                      ...+++...+.|++|+..|++....+|. ...-.++.+..|.+...+    |   .+++|+..|++.- -.|.-+--|..
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  557 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPG-RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG  557 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCC-cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence            3445777888999999999999986553 445677889999888764    2   3566666665532 24555666777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175          262 LGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA  298 (316)
Q Consensus       262 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  298 (316)
                      .+.+|..+|++++-+++|.-+++.-|++|+.-.....
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDH  594 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence            8889999999999999999999999999877554433

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.77  E-value=0.1  Score=45.30  Aligned_cols=78  Identities=9%  Similarity=0.077  Sum_probs=59.9

Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 021175          218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNN-LGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR  295 (316)
Q Consensus       218 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  295 (316)
                      .|+++..|...+..-.+.|-|.+--..|.++++.+|.+++.|.. -+.-+...++++.+...+.++++++|+++..|..
T Consensus       103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            67777777777776777778888888888888888888887766 3344566788888888888888888888777654

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.73  E-value=2.6  Score=40.05  Aligned_cols=113  Identities=11%  Similarity=-0.016  Sum_probs=101.7

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|+++...-.|++.+-........|...+.-....|+.+-|...+..+.+.   ..|..+..+..-+..-...|+++.
T Consensus       308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i---~~k~~~~i~L~~a~f~e~~~n~~~  384 (577)
T KOG1258|consen  308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI---HVKKTPIIHLLEARFEESNGNFDD  384 (577)
T ss_pred             hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh---cCCCCcHHHHHHHHHHHhhccHHH
Confidence            36788889999999998888889999999999999999999999999999997   678888888888889999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL  276 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  276 (316)
                      |...+++..+-.|+...+-.........+|+.+.+.
T Consensus       385 A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  385 AKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            999999999988999888888888888899988887

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.63  E-value=0.1  Score=27.51  Aligned_cols=25  Identities=20%  Similarity=0.110  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          257 TAWNNLGDAYEKKKDLKSALKAFEE  281 (316)
Q Consensus       257 ~~~~~lg~~~~~~g~~~~A~~~~~~  281 (316)
                      .+.+++|.++..+|++++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            4678999999999999999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=93.58  E-value=3.3  Score=40.53  Aligned_cols=127  Identities=14%  Similarity=0.116  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHcCC----CCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHHHcCCH
Q 021175          166 LDLSAKELQEQVRSGD----ASATEYFELGAVML-RRKFYPAATKYLLQAIEKWDGD--DQDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       166 ~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~--~p~~~~~~~~lg~~~~~~g~~  238 (316)
                      ...|+.+++-+++..+    ..+.++..+|.++. ...++++|+.+++|++.+..+.  ......+...++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            4567777777774222    24678999999887 7899999999999999876531  111244566678889888888


Q ss_pred             HHHHHHHHHHHHhCCC----cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcC--CCChhHH
Q 021175          239 DKGISQFETAVKLQPG----YVTAWNNLG--DAYEKKKDLKSALKAFEEVLLFD--PNNKVAR  293 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~----~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~  293 (316)
                      . |...+++.++...+    .+...+.+-  ..+...+|+..|.+.+++.....  ++++...
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~  178 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF  178 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence            8 99999999987554    222333333  22223379999999999988875  3454443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=93.54  E-value=1.3  Score=39.14  Aligned_cols=119  Identities=14%  Similarity=0.131  Sum_probs=75.0

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-------------------CC
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-------------------DD  218 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~  218 (316)
                      +...+..+..+-++....+++++|+.+.++..++.--  ..-..+|++.+++|++..+.                   ..
T Consensus       192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rR  269 (556)
T KOG3807|consen  192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRR  269 (556)
T ss_pred             HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhc
Confidence            3344666777788888899999999999998887632  33456788888888773210                   00


Q ss_pred             ccHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHH
Q 021175          219 QDLAQ--VYNALGVSYVREGKLDKGISQFETAVKLQPGY--VTAWNNLGDAYEKKKDLKSALKA  278 (316)
Q Consensus       219 p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~  278 (316)
                      ..+..  .-..++.|-.++|+..||++.++...+-.|-.  ..++-||-+......-|.+-...
T Consensus       270 Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqav  333 (556)
T KOG3807|consen  270 DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAV  333 (556)
T ss_pred             ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122  22346777777777777777777777766632  34555666666555444443333

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.52  E-value=0.15  Score=29.71  Aligned_cols=27  Identities=26%  Similarity=0.572  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          224 VYNALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       224 ~~~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      ++..||.+-...++|++|++.|+++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344444444445555555555544444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=93.51  E-value=1.1  Score=38.32  Aligned_cols=85  Identities=18%  Similarity=0.156  Sum_probs=62.8

Q ss_pred             ChHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcC
Q 021175          199 FYPAATKYLLQAIEKWDGDD--QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY------VTAWNNLGDAYEKKK  270 (316)
Q Consensus       199 ~~~~A~~~~~~al~~~~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g  270 (316)
                      .-...++.+.+|++.+....  .-.......+|..|+..|++++|.+.|+.+.......      ..+...+-.|+...|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            44566888888888654322  2234556679999999999999999999997665433      566778889999999


Q ss_pred             CHHHHHHHHHHHH
Q 021175          271 DLKSALKAFEEVL  283 (316)
Q Consensus       271 ~~~~A~~~~~~al  283 (316)
                      +.++.+.+.-+.+
T Consensus       233 ~~~~~l~~~leLl  245 (247)
T PF11817_consen  233 DVEDYLTTSLELL  245 (247)
T ss_pred             CHHHHHHHHHHHh
Confidence            9988877655443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.46  E-value=0.37  Score=43.69  Aligned_cols=53  Identities=11%  Similarity=0.006  Sum_probs=27.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 021175          189 ELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQF  245 (316)
Q Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  245 (316)
                      .+..+|.+.++.+-|+.+-.+.|-    .+|.+..-+...+.++..+.+|.+|-..+
T Consensus       233 klv~CYL~~rkpdlALnh~hrsI~----lnP~~frnHLrqAavfR~LeRy~eAarSa  285 (569)
T PF15015_consen  233 KLVTCYLRMRKPDLALNHSHRSIN----LNPSYFRNHLRQAAVFRRLERYSEAARSA  285 (569)
T ss_pred             HHHHhhhhcCCCchHHHHHhhhhh----cCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555    35555555555555555555555544443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.39  E-value=3.5  Score=33.29  Aligned_cols=102  Identities=9%  Similarity=0.061  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHH
Q 021175          146 LGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDA---SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLA  222 (316)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~  222 (316)
                      .++..++.+|.     +.|+.++|.+.|.++.+....   ..+.+.++-.+....+++.....+..++-.......+...
T Consensus        37 ~~~~~l~~~~~-----~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~  111 (177)
T PF10602_consen   37 MALEDLADHYC-----KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER  111 (177)
T ss_pred             HHHHHHHHHHH-----HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence            45666666666     999999999999998876543   4678888889999999999999999999886443222221


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 021175          223 --QVYNALGVSYVREGKLDKGISQFETAVKLQ  252 (316)
Q Consensus       223 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  252 (316)
                        .....-|..+...++|.+|.+.|-.+..-.
T Consensus       112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  112 RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence              233345777888999999999997776544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.18  E-value=0.73  Score=39.53  Aligned_cols=73  Identities=15%  Similarity=0.079  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL  262 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  262 (316)
                      ...++=..+...++++.|..+.++.+.    ++|.++.-....|.+|.+.|.+..|++.++..++.-|+++.+-.-.
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~----l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir  255 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLD----LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR  255 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHh----hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence            344555677888889999999999998    6888888888889999999999999999999888888887665433

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=93.14  E-value=4  Score=40.68  Aligned_cols=104  Identities=13%  Similarity=0.077  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-CC----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-DD----QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---  255 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---  255 (316)
                      +..-...+.......++++|.....++....+. ..    ...++..-..|.+....|+.++|++..+.++..-|.+   
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~  494 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR  494 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence            455566677778889999999999998876432 11    1223444556888899999999999999999987765   


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175          256 --VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP  287 (316)
Q Consensus       256 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  287 (316)
                        ..++..+|.+..-.|++++|..+.+++.++..
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~  528 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMAR  528 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence              56788999999999999999999999988743

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.11  E-value=0.36  Score=27.76  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCCC
Q 021175          257 TAWNNLGDAYEKKKDLKSALKA--FEEVLLFDPNN  289 (316)
Q Consensus       257 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~~  289 (316)
                      +.++.+|..+..+|++++|++.  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            5678899999999999999999  55777777754

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.07  E-value=1.2  Score=30.52  Aligned_cols=63  Identities=17%  Similarity=0.102  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      ...-|.-++...+.++|+..++++++.... .|+--.+.-.+..+|...|+|.+.+++--+-++
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556777788888888888885432 333444445556677788888887777655444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.01  E-value=0.88  Score=37.31  Aligned_cols=74  Identities=12%  Similarity=0.126  Sum_probs=41.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHhhCCCCC
Q 021175          234 REGKLDKGISQFETAVKLQP--GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN----NKVARPRRDALKDRVPLYK  307 (316)
Q Consensus       234 ~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~l~~l~~~~~~~~  307 (316)
                      .+-.-++|...|-++-. .|  ++++..+.||..|. .-|.++++..+.+++++.+.    +++....|+.++...++++
T Consensus       118 sr~~d~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGDQEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCcHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            33333445554433322 22  34666666665554 45666777777777766433    3666666777777776666


Q ss_pred             CC
Q 021175          308 GV  309 (316)
Q Consensus       308 ~A  309 (316)
                      .|
T Consensus       196 ~A  197 (203)
T PF11207_consen  196 QA  197 (203)
T ss_pred             hh
Confidence            54

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.90  E-value=0.31  Score=42.20  Aligned_cols=62  Identities=10%  Similarity=0.123  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 021175          169 SAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR  234 (316)
Q Consensus       169 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~  234 (316)
                      |+.+|.+|....|+....|+.+|.++...|+.-+|+-+|-+++.    .....+.+..||...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~----~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA----VRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS----SSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHH
Confidence            56778888888888888888888888888888888888888886    233346777777777766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=92.86  E-value=1.7  Score=41.17  Aligned_cols=102  Identities=18%  Similarity=0.073  Sum_probs=80.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HHHhcCCCCccHHHHHHHH------HHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQ-AIEKWDGDDQDLAQVYNAL------GVSYVR  234 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~p~~~~~~~~l------g~~~~~  234 (316)
                      ..++...+.......+..+|+...+..+++.+....|....+...+.. +..    ..|.+......+      |.....
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~  154 (620)
T COG3914          79 PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEW----LSPDNAEFLGHLIRFYQLGRYLKL  154 (620)
T ss_pred             ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh----cCcchHHHHhhHHHHHHHHHHHHH
Confidence            456666788888999999999999999999999888777776665555 666    577776655554      888889


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175          235 EGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE  267 (316)
Q Consensus       235 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  267 (316)
                      .|+..++....+++.++.|.++.....+.....
T Consensus       155 l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~  187 (620)
T COG3914         155 LGRTAEAELALERAVDLLPKYPRVLGALMTARQ  187 (620)
T ss_pred             hccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence            999999999999999999998665554444433

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.80  E-value=0.19  Score=29.30  Aligned_cols=30  Identities=17%  Similarity=0.437  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175          257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFD  286 (316)
Q Consensus       257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  286 (316)
                      +++..||.+-...++|++|+..|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.77  E-value=6.2  Score=34.39  Aligned_cols=160  Identities=11%  Similarity=-0.039  Sum_probs=93.8

Q ss_pred             hccchHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHc----CCC-------
Q 021175          116 NASENVQMDAVYEIGELFE-LGIQLSYLLLLLGLLGVGTFFVIRQVLVRR-ELDLSAKELQEQVRS----GDA-------  182 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~----~p~-------  182 (316)
                      ..++.+.|..++..+.... ...+.....+...++     ..+.....++ ++++|...++++.+.    .+.       
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~y-----n~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~   79 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCY-----NIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG   79 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHH-----HHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH
Confidence            4456677777887776666 223322222323333     3444455888 999999999999886    221       


Q ss_pred             ---CHHHHHHHHHHHHHcCChHH---HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-Cc
Q 021175          183 ---SATEYFELGAVMLRRKFYPA---ATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP-GY  255 (316)
Q Consensus       183 ---~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~  255 (316)
                         ...++..++.++...+.++.   |....+.+..    ..|+.+..+...=.+..+.++.+++.+.+.+.+..-+ ..
T Consensus        80 ~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~----e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e  155 (278)
T PF08631_consen   80 SELRLSILRLLANAYLEWDTYESVEKALNALRLLES----EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE  155 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH----hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence               13578889999998887654   3334334433    4666666664333344448999999999999998654 22


Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q 021175          256 VTAWNNLGDAY-EKKKDLKSALKAFEEVLL  284 (316)
Q Consensus       256 ~~~~~~lg~~~-~~~g~~~~A~~~~~~al~  284 (316)
                      ...-..+..+. ........|..++.+.+.
T Consensus       156 ~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~  185 (278)
T PF08631_consen  156 SNFDSILHHIKQLAEKSPELAAFCLDYLLL  185 (278)
T ss_pred             chHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence            22222122221 112333456666655554

It is also involved in sporulation [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=92.68  E-value=2  Score=40.42  Aligned_cols=120  Identities=8%  Similarity=-0.004  Sum_probs=84.2

Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 021175          174 QEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP  253 (316)
Q Consensus       174 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  253 (316)
                      ++-++.+|.+.++|+.+-.-+..+ .+++..+.|++.+.    ..|..+.+|.......+..++|+.-.+.|.+++..-=
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~----~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL   84 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN----VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL   84 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc----cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            667889999999999998877666 89999999999999    6899999999988889999999999999999986433


Q ss_pred             CcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCChhHHHHHHHH
Q 021175          254 GYVTAW-NNLGDAYEKKKDLKSALKAFEEVLL-------FDPNNKVARPRRDAL  299 (316)
Q Consensus       254 ~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~l~~l  299 (316)
                      + .+.| ..+..+....|+...+....-++.+       .++.....|......
T Consensus        85 n-lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~F  137 (656)
T KOG1914|consen   85 N-LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINF  137 (656)
T ss_pred             h-HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence            2 2222 2334444455554443333322222       345555555544433

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=92.36  E-value=1.3  Score=40.26  Aligned_cols=60  Identities=15%  Similarity=0.227  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175          224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL  283 (316)
Q Consensus       224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  283 (316)
                      +...+..||.++++.+-|+....+.+.++|.+..-+...+.|+..+.+|.+|.+.+--+.
T Consensus       230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345688999999999999999999999999999999999999999999999887665554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.30  E-value=6.3  Score=38.74  Aligned_cols=15  Identities=20%  Similarity=0.209  Sum_probs=8.9

Q ss_pred             HhhhHHHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQ  176 (316)
Q Consensus       162 ~~~~~~~A~~~~~~a  176 (316)
                      ..|+++.|+.+|-++
T Consensus       718 ~~~q~daainhfiea  732 (1636)
T KOG3616|consen  718 QIGQLDAAINHFIEA  732 (1636)
T ss_pred             HHHhHHHHHHHHHHh
Confidence            556666666665543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=92.22  E-value=2  Score=44.42  Aligned_cols=126  Identities=15%  Similarity=0.110  Sum_probs=101.1

Q ss_pred             HHHhhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc----CCCCccHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRS--------GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKW----DGDDQDLAQVYNA  227 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~p~~~~~~~~  227 (316)
                      ....+++++|+..-.++.-.        .|+....+.+++...+..++...|...+.++..+.    .+..|..+....+
T Consensus       983 ~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~n 1062 (1236)
T KOG1839|consen  983 SNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFIN 1062 (1236)
T ss_pred             HhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhH
Confidence            44788899998887776532        34567789999999999999999999999998863    2357888888899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          228 LGVSYVREGKLDKGISQFETAVKLQPG--------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       228 lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      ++.++...++++.|+++.+.|.+.+-.        ....+..++..+..+|++..|....+....+
T Consensus      1063 le~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1063 LELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            999999999999999999999986532        2567778888888888888887777666544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.90  E-value=1.3  Score=43.20  Aligned_cols=64  Identities=19%  Similarity=0.237  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHh-----------------CCCc-HHHHHHHHHHHHHcCCHHHHH
Q 021175          221 LAQVYNALGVSYVREGKLDKGISQF------ETAVKL-----------------QPGY-VTAWNNLGDAYEKKKDLKSAL  276 (316)
Q Consensus       221 ~~~~~~~lg~~~~~~g~~~~A~~~~------~~al~~-----------------~p~~-~~~~~~lg~~~~~~g~~~~A~  276 (316)
                      ....|...+.-.-..|+|.+|.+.|      .+|++.                 .|++ .+.+..+|.-|...|+.+.|.
T Consensus       823 t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae  902 (1636)
T KOG3616|consen  823 TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAE  902 (1636)
T ss_pred             HHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHH
Confidence            3445555666666667666655544      223322                 1222 456778899999999999999


Q ss_pred             HHHHHHHh
Q 021175          277 KAFEEVLL  284 (316)
Q Consensus       277 ~~~~~al~  284 (316)
                      ..|.++-+
T Consensus       903 ~~flea~d  910 (1636)
T KOG3616|consen  903 EHFLEAGD  910 (1636)
T ss_pred             HHHHhhhh
Confidence            88877644

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.84  E-value=0.75  Score=44.90  Aligned_cols=114  Identities=24%  Similarity=0.265  Sum_probs=91.0

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175          190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR--EGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE  267 (316)
Q Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  267 (316)
                      -|+..+..+++.+|.--|..++...|+.++..+....+.+.+++.  .|+|.+++.-..-++...|....+....+.+|.
T Consensus        59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~  138 (748)
T KOG4151|consen   59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE  138 (748)
T ss_pred             hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence            356677788888887778888876555566777788888888765  578999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175          268 KKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV  303 (316)
Q Consensus       268 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~  303 (316)
                      ..++.+-|.+...-....+|++.++-....+++...
T Consensus       139 al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  139 ALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            999999999998888888999877766554444444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.66  E-value=1.2  Score=38.60  Aligned_cols=65  Identities=18%  Similarity=0.146  Sum_probs=58.8

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL  251 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  251 (316)
                      ...++..++..+...|+++.+++.+++.+.    .+|.+...|..+=..|...|+...|+..|++.-+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~----~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIE----LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            356788899999999999999999999999    79999999999999999999999999999887664

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=91.54  E-value=0.37  Score=42.71  Aligned_cols=105  Identities=16%  Similarity=0.131  Sum_probs=82.8

Q ss_pred             HHhhhHHHHHHHHHHHHHcCC-----------C--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH
Q 021175          161 LVRRELDLSAKELQEQVRSGD-----------A--------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL  221 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p-----------~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~  221 (316)
                      ..+++++.|...+.++++.-.           +        ......+++.+-...+.+..|+..-..+++    .++..
T Consensus       233 ~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~----~~~s~  308 (372)
T KOG0546|consen  233 FKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR----DERSK  308 (372)
T ss_pred             hhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc----cChhh
Confidence            367888888888887765211           1        123556777888888999999888888887    68899


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 021175          222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK  269 (316)
Q Consensus       222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  269 (316)
                      ..+++..|..+....++++|.+.++.+....|++....-.+..+-...
T Consensus       309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~  356 (372)
T KOG0546|consen  309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK  356 (372)
T ss_pred             CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence            999999999999999999999999999999999987766555544433

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=91.54  E-value=7.4  Score=38.93  Aligned_cols=110  Identities=13%  Similarity=0.024  Sum_probs=81.4

Q ss_pred             HhhhHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDA---------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ-DLAQVYNALGVS  231 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p-~~~~~~~~lg~~  231 (316)
                      .+.++++|.....++...-+.         .+...-..|.+....|+.++|+++.+.++...++..+ ....++..+|.+
T Consensus       427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a  506 (894)
T COG2909         427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA  506 (894)
T ss_pred             HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence            677888888877776654332         1345556677888999999999999999997554222 346678889999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC----c--HHHHHHHHHHHHHcCC
Q 021175          232 YVREGKLDKGISQFETAVKLQPG----Y--VTAWNNLGDAYEKKKD  271 (316)
Q Consensus       232 ~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~lg~~~~~~g~  271 (316)
                      ..-+|++++|..+.+++.+....    +  ..+....+.+...+|+
T Consensus       507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq  552 (894)
T COG2909         507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ  552 (894)
T ss_pred             HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence            99999999999999999887432    2  3344555777778883

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.21  E-value=3.9  Score=35.60  Aligned_cols=56  Identities=23%  Similarity=0.283  Sum_probs=50.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175          228 LGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL  283 (316)
Q Consensus       228 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  283 (316)
                      .+..|...|.+.+|++..+++++++|-+...+..+-.++..+||--.+.+.|++.-
T Consensus       285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            46678889999999999999999999999999999999999999888888877654

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.04  E-value=11  Score=34.31  Aligned_cols=137  Identities=14%  Similarity=0.092  Sum_probs=100.9

Q ss_pred             HhhhH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------cCChHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 021175          162 VRREL-DLSAKELQEQVRSGDASATEYFELGAVMLR------------RKFYPAATKYLLQAIEKWDGDDQDLAQVYNAL  228 (316)
Q Consensus       162 ~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~l  228 (316)
                      ..|.+ +++++.-.+.+..+|+...+|+..-.++..            ..-.++-+.+...+++    .+|+...+|+.+
T Consensus        40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~----~npksY~aW~hR  115 (421)
T KOG0529|consen   40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALK----VNPKSYGAWHHR  115 (421)
T ss_pred             hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHH----hCchhHHHHHHH
Confidence            34444 466777777788888877766654443332            2245667778888888    799999999999


Q ss_pred             HHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          229 GVSYVREGK--LDKGISQFETAVKLQPGYVTAWNNLGDAYEKK----KDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       229 g~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      ..++.+.+.  +..=++..+++++.||.+-.+|...=.+....    ....+-+++..+++.-++.|-.+|.....+...
T Consensus       116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~  195 (421)
T KOG0529|consen  116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLST  195 (421)
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence            999987764  57889999999999999877776554444332    235677888889998899999998887776654

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=90.54  E-value=6.3  Score=31.94  Aligned_cols=129  Identities=16%  Similarity=0.129  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CC--hHHHHHHHHHHHHhcCCCCc
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRR-----KF--YPAATKYLLQAIEKWDGDDQ  219 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~--~~~A~~~~~~al~~~~~~~p  219 (316)
                      +++..|.+++....-..++...|+..+..+..  .+.+++..++|.++...     ++  ..+|++++.++.++      
T Consensus        70 SCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl------  141 (248)
T KOG4014|consen   70 SCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL------  141 (248)
T ss_pred             HHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC------
Confidence            44555555554434456677788888876655  45677777777776532     23  56788888888763      


Q ss_pred             cHHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Q 021175          220 DLAQVYNALGVSYVRE------------------------GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK----KKD  271 (316)
Q Consensus       220 ~~~~~~~~lg~~~~~~------------------------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~  271 (316)
                      ++..+.++|+..|+.-                        ++.+.|.++--+|.+++  ++.+.-|+..+|..    -++
T Consensus       142 ~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kd  219 (248)
T KOG4014|consen  142 EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKD  219 (248)
T ss_pred             CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCcc
Confidence            2334444444444422                        45566666666666543  35555566666543    234


Q ss_pred             HHHHHHHHHHHHhc
Q 021175          272 LKSALKAFEEVLLF  285 (316)
Q Consensus       272 ~~~A~~~~~~al~~  285 (316)
                      .++|..+-.++.++
T Consensus       220 e~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  220 EDQAEKYKDRAKEI  233 (248)
T ss_pred             HHHHHHHHHHHHHH
Confidence            56666666666554

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=90.40  E-value=6.1  Score=38.67  Aligned_cols=95  Identities=21%  Similarity=0.227  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------cc----------------HHHHHHHHHHHHHHcCCHHHHHH
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD------QD----------------LAQVYNALGVSYVREGKLDKGIS  243 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------p~----------------~~~~~~~lg~~~~~~g~~~~A~~  243 (316)
                      ++..-|......+..++|.++++++++..++..      +.                ........+.+..-.+++.+|..
T Consensus       303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~  382 (608)
T PF10345_consen  303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ  382 (608)
T ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            455666777788888899999999998654311      00                11233456777788999999999


Q ss_pred             HHHHHHHhC---CC------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175          244 QFETAVKLQ---PG------YVTAWNNLGDAYEKKKDLKSALKAFE  280 (316)
Q Consensus       244 ~~~~al~~~---p~------~~~~~~~lg~~~~~~g~~~~A~~~~~  280 (316)
                      ..++..+..   |.      .+..++..|..+...|+.+.|..+|.
T Consensus       383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            998877653   22      37788999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.40  E-value=1.5  Score=26.48  Aligned_cols=24  Identities=38%  Similarity=0.494  Sum_probs=12.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 021175          260 NNLGDAYEKKKDLKSALKAFEEVL  283 (316)
Q Consensus       260 ~~lg~~~~~~g~~~~A~~~~~~al  283 (316)
                      ++++.+|..+|+.+.|.+.+++++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHH
Confidence            344555555555555555555555

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.37  E-value=2  Score=36.97  Aligned_cols=129  Identities=14%  Similarity=0.148  Sum_probs=82.6

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-----C--------------
Q 021175          161 LVRRELDLSAKELQEQVRSGDASA----TEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-----D--------------  217 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~--------------  217 (316)
                      +...+.++|+..|++.++..++..    .++-.+-.+.++.++|++-.+.|.+.+.....     .              
T Consensus        38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt  117 (440)
T KOG1464|consen   38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST  117 (440)
T ss_pred             ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence            356678899999999999888653    46777788889999999998888887763210     0              


Q ss_pred             -------------------CccHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---------cHHHHHHH
Q 021175          218 -------------------DQDLAQVY----NALGVSYVREGKLDKGISQFETAVKL---QPG---------YVTAWNNL  262 (316)
Q Consensus       218 -------------------~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~---~p~---------~~~~~~~l  262 (316)
                                         +..+...|    ..||.+|+..++|.+-.+.+++.-+.   +..         ..++|..-
T Consensus       118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE  197 (440)
T KOG1464|consen  118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE  197 (440)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence                               00111111    24677777777777666665554432   211         12344444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175          263 GDAYEKKKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       263 g~~~~~~g~~~~A~~~~~~al~~~p~~  289 (316)
                      -++|-.+++-.+-...|++++.+...-
T Consensus       198 IQmYT~qKnNKkLK~lYeqalhiKSAI  224 (440)
T KOG1464|consen  198 IQMYTEQKNNKKLKALYEQALHIKSAI  224 (440)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHhhccC
Confidence            556667777677777888888775543

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=89.90  E-value=9.3  Score=31.01  Aligned_cols=130  Identities=15%  Similarity=0.155  Sum_probs=90.2

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLR-----RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE-  235 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~-  235 (316)
                      -++++++|.+.|+.-...+. .+...+.+|..+..     .++...|++.+..+..      .+++.+..++|.++..- 
T Consensus        47 i~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~------~n~~~aC~~~gLl~~~g~  119 (248)
T KOG4014|consen   47 IQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD------ANIPQACRYLGLLHWNGE  119 (248)
T ss_pred             HHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc------cCCHHHHhhhhhhhccCc
Confidence            35677888887776555443 56777888876653     4678999999999986      35667778888887743 


Q ss_pred             ----CC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHhc
Q 021175          236 ----GK--LDKGISQFETAVKLQPGYVTAWNNLGDAYEKK------------------------KDLKSALKAFEEVLLF  285 (316)
Q Consensus       236 ----g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------------------g~~~~A~~~~~~al~~  285 (316)
                          ++  ..+|.+++.++.++.  +..+.++|...|..-                        .+.+.|.++--++-++
T Consensus       120 ~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel  197 (248)
T KOG4014|consen  120 KDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL  197 (248)
T ss_pred             CCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc
Confidence                33  678999999998764  455566666666543                        4567777777777666


Q ss_pred             CCCChhHHHHHHHHHhh
Q 021175          286 DPNNKVARPRRDALKDR  302 (316)
Q Consensus       286 ~p~~~~a~~~l~~l~~~  302 (316)
                        +++.+-.++.+++..
T Consensus       198 --~~~~aCAN~SrMykl  212 (248)
T KOG4014|consen  198 --DIPQACANVSRMYKL  212 (248)
T ss_pred             --CChHHHhhHHHHHHc
Confidence              345666666666544

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=89.84  E-value=4.3  Score=44.72  Aligned_cols=116  Identities=14%  Similarity=0.124  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc-----
Q 021175          182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-PGY-----  255 (316)
Q Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~-----  255 (316)
                      ...++|.+.|.+....|+++.|....-+|.+    ..  -+.++...|...+.+|+-..|+..+++.+.++ |+.     
T Consensus      1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e----~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKE----SR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHhhhh----cc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence            3478999999999999999999999999987    23  67889999999999999999999999999764 331     


Q ss_pred             -----------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175          256 -----------VTAWNNLGDAYEKKKDL--KSALKAFEEVLLFDPNNKVARPRRDALKDRV  303 (316)
Q Consensus       256 -----------~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~  303 (316)
                                 ..+....+......|++  ++-++.|+.+.+..|...+.++.++.-+.+.
T Consensus      1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred             ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence                       22344455555566664  4567899999999998888888888655443

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.83  E-value=9.3  Score=34.85  Aligned_cols=137  Identities=12%  Similarity=0.117  Sum_probs=105.6

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----c
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKF--YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR----E  235 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~----~  235 (316)
                      .+.-.++-+.....+++.+|+.-.+|+..-.++.+.+.  +..=++..+++++    .+|.+-.+|...=.+...    .
T Consensus        87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~----~D~RNfh~W~YRRfV~~~~~~~~  162 (421)
T KOG0529|consen   87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALK----QDPRNFHAWHYRRFVVEQAERSR  162 (421)
T ss_pred             HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh----cCcccccchHHHHHHHHHHhccc
Confidence            34466778888999999999999999999999987764  5788889999999    688887777665444433    2


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK------KKD------LKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------~g~------~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      ....+=+++..+++.-++.+..+|.+...+...      .|+      ...-++.-..++-.+|++..+|.....+..+
T Consensus       163 ~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~  241 (421)
T KOG0529|consen  163 NLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR  241 (421)
T ss_pred             ccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence            346777889999999999999999888777662      331      2455677778888899999999876555444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.80  E-value=6.9  Score=36.64  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=24.3

Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          219 QDLAQVYNALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       219 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      .+++..|..||.....+|+++-|.++|+++-+
T Consensus       344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d  375 (443)
T PF04053_consen  344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD  375 (443)
T ss_dssp             CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred             cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence            34566888888888888888888888877643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.39  E-value=12  Score=31.40  Aligned_cols=55  Identities=16%  Similarity=0.035  Sum_probs=46.3

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIE  212 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  212 (316)
                      ...++.+..++++...++-++.+|.+......+-..+.-.|+|++|..-++-+-+
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~   63 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT   63 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence            3456788888888888888888888888888888888888888888888888877

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.35  E-value=0.91  Score=27.38  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          226 NALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       226 ~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      ++++.+|..+|+++.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5788999999999999999999885

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.20  E-value=2.3  Score=35.41  Aligned_cols=60  Identities=17%  Similarity=0.120  Sum_probs=42.1

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175          192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  255 (316)
                      ..+.+.+..++|+...+.-++    .+|.+......+=..+.-.|+|++|...++-+-++.|++
T Consensus         9 seLL~~~sL~dai~~a~~qVk----akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVK----AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHh----cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            345566677777777777777    577777766666667777777777777777777777765

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=88.48  E-value=23  Score=33.68  Aligned_cols=137  Identities=18%  Similarity=0.108  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH-HHHcCCHHHHH
Q 021175          165 ELDLSAKELQEQVRSGDAS-ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVS-YVREGKLDKGI  242 (316)
Q Consensus       165 ~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~-~~~~g~~~~A~  242 (316)
                      .++...+.+.+.+.+...+ .-++.++-+.-.+..-.+.|...|.+|-+    ..-....++..-|.+ |...++.+-|.
T Consensus       346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~----~~r~~hhVfVa~A~mEy~cskD~~~Af  421 (656)
T KOG1914|consen  346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE----DKRTRHHVFVAAALMEYYCSKDKETAF  421 (656)
T ss_pred             hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh----ccCCcchhhHHHHHHHHHhcCChhHHH
Confidence            3556667777777654433 34566666666677778889999999987    222223444444433 56789999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-ChhHHHHHHHHHhhCCC
Q 021175          243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF--DPN-NKVARPRRDALKDRVPL  305 (316)
Q Consensus       243 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~-~~~a~~~l~~l~~~~~~  305 (316)
                      ..|+-.++..++.+..-......+...|+-..|...|++++..  .|+ ..+.|...-..+...|+
T Consensus       422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd  487 (656)
T KOG1914|consen  422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD  487 (656)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence            9999999999999988888888888999999999999999876  333 23555555444444444

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=88.40  E-value=17  Score=33.31  Aligned_cols=72  Identities=18%  Similarity=0.144  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  255 (316)
                      +...+.+-..|...+.|+.|.+...++.---...+...+...+.+|.+..-+++|..|.+++-+|++..|++
T Consensus       209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            445556667888889999998887776521000233557778889999999999999999999999999976

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=88.24  E-value=5.9  Score=38.66  Aligned_cols=29  Identities=14%  Similarity=0.214  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIE  212 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~  212 (316)
                      .+++.++|..+..+..|++|.++|.+.-.
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~  824 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD  824 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            56888999999999999999998877644

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.16  E-value=6.7  Score=36.71  Aligned_cols=98  Identities=16%  Similarity=0.108  Sum_probs=59.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      +.|+.+.|.+..     ...+++..|..+|...+.+|+++-|+++|+++-.            +..|...|...|+.+.=
T Consensus       330 ~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------~~~L~lLy~~~g~~~~L  392 (443)
T PF04053_consen  330 QLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD------------FSGLLLLYSSTGDREKL  392 (443)
T ss_dssp             HCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------HHHHHHHHHHCT-HHHH
T ss_pred             hcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------ccccHHHHHHhCCHHHH
Confidence            445555444422     2345788999999999999999999999998866            34566777788887666


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE  281 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  281 (316)
                      .+..+.|......+..     =.++...|+.++-.+.+.+
T Consensus       393 ~kl~~~a~~~~~~n~a-----f~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  393 SKLAKIAEERGDINIA-----FQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHHHHHTT-HHHH-----HHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHH-----HHHHHHcCCHHHHHHHHHH
Confidence            6665555543322211     1233445555555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.96  E-value=11  Score=34.36  Aligned_cols=99  Identities=17%  Similarity=0.017  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C-Cc
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-------P-GY  255 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p-~~  255 (316)
                      -.++..+|.-|...|+.+.|++.|-++-..+.+ ..+....+.|+=.+-...|+|..-..+-.+|.+.-       + -.
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~  228 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP  228 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence            357889999999999999999999997775542 44567778888888888999988888777776641       0 11


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175          256 VTAWNNLGDAYEKKKDLKSALKAFEEVL  283 (316)
Q Consensus       256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al  283 (316)
                      +.....-|.+...+++|..|.+++-.+-
T Consensus       229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  229 AKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3455667777888889999998886553

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=87.81  E-value=19  Score=35.41  Aligned_cols=108  Identities=11%  Similarity=0.141  Sum_probs=68.5

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELG-AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      -|++++|++.|-.+-+.+         ++ ..+.+.|||-...+.++..-.  +..+.....++.++|..+..+.++++|
T Consensus       747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~--d~dD~~~e~A~r~ig~~fa~~~~We~A  815 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGS--DDDDEGKEDAFRNIGETFAEMMEWEEA  815 (1189)
T ss_pred             hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCC--CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467777777776543221         22 345566777666666554322  002345577889999999999999999


Q ss_pred             HHHHHHHHH----------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          242 ISQFETAVK----------------------LQPGYVTAWNNLGDAYEKKKDLKSALKAFEE  281 (316)
Q Consensus       242 ~~~~~~al~----------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  281 (316)
                      .++|.+.-.                      .-|++.+..-.+|.++...|--++|.++|.+
T Consensus       816 ~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  816 AKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            998866432                      1255555666667777777777777776654

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=87.74  E-value=1.9  Score=23.14  Aligned_cols=26  Identities=19%  Similarity=0.423  Sum_probs=12.9

Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175          237 KLDKGISQFETAVKLQPGYVTAWNNL  262 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~~~~~~~l  262 (316)
                      +.+.|.+.|++++...|.+...|...
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y   27 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKY   27 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            34445555555555555555544443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=87.58  E-value=1.5  Score=23.65  Aligned_cols=31  Identities=19%  Similarity=0.185  Sum_probs=27.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 021175          270 KDLKSALKAFEEVLLFDPNNKVARPRRDALK  300 (316)
Q Consensus       270 g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~  300 (316)
                      |+.+.+...|++++...|.++..|.......
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e   31 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFE   31 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            5788999999999999999999998876654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=87.36  E-value=12  Score=34.39  Aligned_cols=56  Identities=20%  Similarity=0.223  Sum_probs=40.9

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHcCCCCH--HHHHHHHHHH--HHcCChHHHHHHHHHHHH
Q 021175          157 IRQVLVRRELDLSAKELQEQVRSGDASA--TEYFELGAVM--LRRKFYPAATKYLLQAIE  212 (316)
Q Consensus       157 ~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~--~~~g~~~~A~~~~~~al~  212 (316)
                      ....++.++|..|.+.+......-|...  ..+..+...|  -..-++++|.+++++...
T Consensus       138 a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~  197 (379)
T PF09670_consen  138 AKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK  197 (379)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3445689999999999999988633333  3444554444  467889999999999887

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=86.88  E-value=8.6  Score=33.18  Aligned_cols=60  Identities=13%  Similarity=0.011  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHcCChH-HHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 021175          186 EYFELGAVMLRRKFYP-AATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKLDKGISQF  245 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~-~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  245 (316)
                      ...++..+....+.-+ +-.+..+++++-...  ..-.++..+..+|..+++.|++.+|..+|
T Consensus        51 ~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   51 SIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence            3345555554443332 334444455543311  11245666666666666666666666554

; PDB: 3LKU_E 2WPV_G.

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=86.31  E-value=10  Score=32.97  Aligned_cols=112  Identities=13%  Similarity=0.099  Sum_probs=71.2

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH---HHcCC----hHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDA--SATEYFELGAVM---LRRKF----YPAATKYLLQAIEKWDGDDQDLAQVYNAL  228 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~---~~~g~----~~~A~~~~~~al~~~~~~~p~~~~~~~~l  228 (316)
                      ++.+..++|++-.+.+.+..+...+  ..+..+..+...   .....    ...-.+.++.-++    ..|++..++..+
T Consensus         8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~----a~P~Sy~A~La~   83 (277)
T PF13226_consen    8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVA----ACPKSYHAHLAM   83 (277)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHH----HCCCChHHHHHH
Confidence            4456788888888877777653322  111112222211   11111    1135666667777    688888888888


Q ss_pred             HHHHHHcC----------------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 021175          229 GVSYVREG----------------------KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLK  273 (316)
Q Consensus       229 g~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  273 (316)
                      |..+....                      -.+.|...+.+|++++|....+...+-.+-...|+.+
T Consensus        84 g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~  150 (277)
T PF13226_consen   84 GMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD  150 (277)
T ss_pred             HHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence            87766431                      2467888899999999999888887777777777654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.59  E-value=4.3  Score=35.31  Aligned_cols=60  Identities=17%  Similarity=0.021  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAV  249 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  249 (316)
                      .....+..|...|.+.+|+++-++++.    .+|-+...+..+=.++...|+--++++.|++--
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~lt----ldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALT----LDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhh----cChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            344456678889999999999999999    799999999999999999999999999887643

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.36  E-value=6.2  Score=26.87  Aligned_cols=18  Identities=22%  Similarity=0.560  Sum_probs=9.1

Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 021175          232 YVREGKLDKGISQFETAV  249 (316)
Q Consensus       232 ~~~~g~~~~A~~~~~~al  249 (316)
                      +-..|++++|+.+|++++
T Consensus        16 ~D~~gr~~eAi~~Y~~aI   33 (75)
T cd02682          16 AEKEGNAEDAITNYKKAI   33 (75)
T ss_pred             HHhcCCHHHHHHHHHHHH
Confidence            444555555555554444

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=84.94  E-value=3  Score=27.74  Aligned_cols=19  Identities=11%  Similarity=0.377  Sum_probs=10.3

Q ss_pred             HHHcCCHHHHHHHHHHHHH
Q 021175          232 YVREGKLDKGISQFETAVK  250 (316)
Q Consensus       232 ~~~~g~~~~A~~~~~~al~  250 (316)
                      .-..|++++|++.|.++++
T Consensus        15 ~D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen   15 ADEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHHTTSHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            3445566665555555543

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=84.59  E-value=5.9  Score=36.39  Aligned_cols=64  Identities=17%  Similarity=0.078  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHH----hcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          187 YFELGAVMLRRKFYPAATKYLLQAIE----KWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      ...+..++.-.|||..|++.++..--    .+....+-+...++..|.+|+-+++|.+|+..|...+-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444556666777777666542210    01112334455667777777777777777777776663

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=84.35  E-value=1.7  Score=36.60  Aligned_cols=108  Identities=13%  Similarity=0.090  Sum_probs=62.9

Q ss_pred             HHHcCChHHHHHHHHHHHHhcCCCCccH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc--HH
Q 021175          194 MLRRKFYPAATKYLLQAIEKWDGDDQDL---------AQVYNALGVSYVREGKLDKGISQFETAVKL-----QPGY--VT  257 (316)
Q Consensus       194 ~~~~g~~~~A~~~~~~al~~~~~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~--~~  257 (316)
                      .+..|+++.|++..+.|++..-. -|+.         ++-...-+......|+.-+. ..++....+     -|+.  +.
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~-~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vrAK  170 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLT-MPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVRAK  170 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCC-CCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHHHH
Confidence            45678999999999999985321 1211         22223344445555553211 112222222     1333  34


Q ss_pred             HHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          258 AWNNLGDAYE---------KKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       258 ~~~~lg~~~~---------~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      .+-..|..+.         ..++.+.|+.++++|++++|+. .+...+..+..++.
T Consensus       171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr  225 (230)
T PHA02537        171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK  225 (230)
T ss_pred             HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence            4556677663         4567889999999999999864 44555666666654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.04  E-value=8.4  Score=39.36  Aligned_cols=60  Identities=12%  Similarity=0.120  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          221 LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       221 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      .+..|..+|.+..+.|...+|++.|-+|     +++..|...-.+..+.|.+++-++++..+.+.
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            3667888888888888888888887554     56677777777777888888888877776553

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.75  E-value=3.3  Score=28.33  Aligned_cols=19  Identities=16%  Similarity=0.364  Sum_probs=11.2

Q ss_pred             HHHcCCHHHHHHHHHHHHH
Q 021175          232 YVREGKLDKGISQFETAVK  250 (316)
Q Consensus       232 ~~~~g~~~~A~~~~~~al~  250 (316)
                      .-..|+|++|+.+|+++++
T Consensus        16 ~D~~g~y~eA~~~Y~~aie   34 (76)
T cd02681          16 RDQEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HHHccCHHHHHHHHHHHHH
Confidence            3345666666666666654

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.62  E-value=29  Score=35.81  Aligned_cols=137  Identities=15%  Similarity=0.153  Sum_probs=88.2

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC------------------------
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG------------------------  216 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------------------  216 (316)
                      ++.+...+|++.|-++     +++..|...-.+..+.|.|++-+.++.-+-+...+                        
T Consensus      1115 L~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1115 LQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred             HhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh
Confidence            3556666777666553     56677777777788888888888777766553210                        


Q ss_pred             CCcc-------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------C------
Q 021175          217 DDQD-------------------------LAQVYNALGVSYVREGKLDKGISQFETAVKLQP-----------G------  254 (316)
Q Consensus       217 ~~p~-------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------~------  254 (316)
                      ..|+                         +..-+..|+..+...|+|+.|+..-++|-....           .      
T Consensus      1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred             cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH
Confidence            0111                         122234567777788888888888777643220           0      


Q ss_pred             --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          255 --------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       255 --------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                              +++-.-.+-..|...|-+++-+..++.++-+...+......++.++.+
T Consensus      1270 iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1270 ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred             hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence                    123344566777888888888888888887776666666666666544

>PRK11619 lytic murein transglycosylase; Provisional

Probab=83.31  E-value=36  Score=33.68  Aligned_cols=118  Identities=7%  Similarity=-0.067  Sum_probs=71.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175          162 VRRELDLSAKELQEQVRSGDAS----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK  237 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~  237 (316)
                      ...+.+.|...+.+......-.    ......+|.-....+.-++|..++.++..     ...+....-..-..-...++
T Consensus       253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~-----~~~~~~~~e~r~r~Al~~~d  327 (644)
T PRK11619        253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM-----RSQSTSLLERRVRMALGTGD  327 (644)
T ss_pred             HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc-----ccCCcHHHHHHHHHHHHccC
Confidence            3445566777776654433322    22333444333333336677777776554     11122222222334447888


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175          238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL  284 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  284 (316)
                      ++.....+...-....+.....|.+|..+...|+.++|...|+++..
T Consensus       328 w~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        328 RRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            88887777764433345677889999999999999999999999754

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=82.91  E-value=32  Score=30.13  Aligned_cols=48  Identities=10%  Similarity=0.151  Sum_probs=36.6

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHcCChHHHH
Q 021175          157 IRQVLVRRELDLSAKELQEQVRSGD--------ASATEYFELGAVMLRRKFYPAAT  204 (316)
Q Consensus       157 ~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~  204 (316)
                      .++....+++++|+..|.+.+...-        +...+..+++.+|...|++..--
T Consensus        10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~   65 (421)
T COG5159          10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG   65 (421)
T ss_pred             HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence            3445588999999999999987632        23457889999999999886533

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.88  E-value=2.7  Score=28.94  Aligned_cols=18  Identities=6%  Similarity=0.346  Sum_probs=10.4

Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 021175          233 VREGKLDKGISQFETAVK  250 (316)
Q Consensus       233 ~~~g~~~~A~~~~~~al~  250 (316)
                      -..|+.++|+.+|+++++
T Consensus        19 dE~g~~e~Al~~Y~~gi~   36 (79)
T cd02679          19 DEWGDKEQALAHYRKGLR   36 (79)
T ss_pred             hhcCCHHHHHHHHHHHHH
Confidence            344666666666666554

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=82.80  E-value=15  Score=31.37  Aligned_cols=66  Identities=18%  Similarity=0.126  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD--QDLAQVYNALGVSYVREGKLDKGISQFETAV  249 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  249 (316)
                      ......+|..|+..|+|++|.++|+.+...+.+..  .-...+...+-.|+...|+.++.+...-+.+
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            45667899999999999999999999977433211  2245667778899999999998887765543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]

Probab=82.79  E-value=16  Score=32.35  Aligned_cols=84  Identities=12%  Similarity=0.080  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175          167 DLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE  246 (316)
Q Consensus       167 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  246 (316)
                      ..-.+++++-....|+..++.+..+...+..|+|..|-+++--.....+..+++...+....=..-.-+.+|+.|.+.+.
T Consensus       112 ~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~  191 (432)
T KOG2758|consen  112 VQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLT  191 (432)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            35567777777788999999999999999999999999887766665443455555555444334455789999999886


Q ss_pred             HHHH
Q 021175          247 TAVK  250 (316)
Q Consensus       247 ~al~  250 (316)
                      +.-+
T Consensus       192 rLre  195 (432)
T KOG2758|consen  192 RLRE  195 (432)
T ss_pred             HHHH
Confidence            6554

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=82.25  E-value=6.4  Score=30.50  Aligned_cols=47  Identities=15%  Similarity=0.042  Sum_probs=30.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 021175          226 NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDL  272 (316)
Q Consensus       226 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  272 (316)
                      ...+...+..|++.-|.+....++..+|++.++....+.++.++|..
T Consensus        74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            33444556667777777777777777777777777777777766643

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=81.62  E-value=28  Score=29.44  Aligned_cols=93  Identities=14%  Similarity=0.090  Sum_probs=57.8

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-CCcc--HHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASA------------TEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-DDQD--LAQVYN  226 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~p~--~~~~~~  226 (316)
                      +.|+++.|++..+-+++.+-..|            +....-+......|+.-+. ...+....+... .-|+  .+..|-
T Consensus        95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vrAKl~K  173 (230)
T PHA02537         95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVRAKLYK  173 (230)
T ss_pred             eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHHHHHHH
Confidence            78999999999999999654322            2333444444555553211 112222222111 1233  455666


Q ss_pred             HHHHHHH---------HcCCHHHHHHHHHHHHHhCCCc
Q 021175          227 ALGVSYV---------REGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       227 ~lg~~~~---------~~g~~~~A~~~~~~al~~~p~~  255 (316)
                      ..|..+.         ..++..+|..++++|++++|+.
T Consensus       174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~  211 (230)
T PHA02537        174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC  211 (230)
T ss_pred             HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence            6788774         4568889999999999999975

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.56  E-value=5.3  Score=27.20  Aligned_cols=27  Identities=19%  Similarity=-0.006  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 021175          187 YFELGAVMLRRKFYPAATKYLLQAIEK  213 (316)
Q Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~  213 (316)
                      +...+.-+-..|++++|+.+|+++++.
T Consensus         9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           9 YAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            444455556677777777777777663

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=81.29  E-value=6.5  Score=32.10  Aligned_cols=32  Identities=19%  Similarity=0.313  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 021175          222 AQVYNALGVSYVREGKLDKGISQFETAVKLQP  253 (316)
Q Consensus       222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  253 (316)
                      +..+.+++.++...|+.++|.+..+++..+.|
T Consensus       144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  144 PNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            44444455555555555555555555555555

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=80.98  E-value=49  Score=30.95  Aligned_cols=119  Identities=7%  Similarity=-0.040  Sum_probs=79.4

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175          162 VRRELDLSAKELQEQVRSGDASAT-----EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g  236 (316)
                      .+++.+++.+.|.+..+...+.+.     .+-+.-.-.+-.++.+.-.......-+    ..|..+....-.|...++.|
T Consensus        18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~----~~~~s~~l~LF~~L~~Y~~k   93 (549)
T PF07079_consen   18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQ----QFGKSAYLPLFKALVAYKQK   93 (549)
T ss_pred             HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHhh
Confidence            788999999999998776554432     222222222334455555544444444    56777777788899999999


Q ss_pred             CHHHHHHHHHHHHHhCCCc-------------HHHH--HHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175          237 KLDKGISQFETAVKLQPGY-------------VTAW--NNLGDAYEKKKDLKSALKAFEEVLL  284 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~-------------~~~~--~~lg~~~~~~g~~~~A~~~~~~al~  284 (316)
                      +|.+|++.+..--..-.+.             ++.+  .-.+.++...|++.+++..+++.+.
T Consensus        94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~  156 (549)
T PF07079_consen   94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE  156 (549)
T ss_pred             hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            9999999886554431111             1111  2356788899999999999888775

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12854 PPR_1: PPR repeat

Probab=80.95  E-value=4.7  Score=22.55  Aligned_cols=26  Identities=12%  Similarity=-0.050  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHH
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQ  209 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~  209 (316)
                      ...|..+-..+.+.|+.++|.+.+++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            44455555666666666666665543

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.87  E-value=32  Score=33.04  Aligned_cols=121  Identities=11%  Similarity=0.090  Sum_probs=72.4

Q ss_pred             HhhhHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-------------
Q 021175          162 VRRELDLSAKELQEQVRS------------GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-------------  216 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------  216 (316)
                      ....|+++...|.-+...            .|-+.+.+..++.++..+|+.+-|.+..++++=.++.             
T Consensus       250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            345566777777666553            3445677777888888888888888888887754431             


Q ss_pred             ----CCccHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 021175          217 ----DDQDLAQVYN---ALGVSYVREGKLDKGISQFETAVKLQPG-YVTAWNNLGDAYE-KKKDLKSALKAFEEV  282 (316)
Q Consensus       217 ----~~p~~~~~~~---~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~a  282 (316)
                          ..|.+-..|.   ..=....+.|.+.-|.++++-.++++|. ++-+...+-..|. +..+|+--++.++..
T Consensus       330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~  404 (665)
T KOG2422|consen  330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP  404 (665)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                1122222221   2223344667778888888877788776 6665555555543 344555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	316
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		7e-12
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		5e-10
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		7e-10
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-09
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-09
2q7f_A	243	Crystal Structure Of Yrrb: A Tpr Protein With An Un		2e-07
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-07
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		2e-05
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		1e-04
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		9e-04

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
           SA  ++ LG    ++  Y  A +Y  +A+E     D + A+ +  LG +Y ++G  D+ I
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
             ++ A++L P    AW NLG+AY K+ D   A++ +++ L  DPNN  A+
Sbjct: 64  EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
           SA  ++ LG    ++  Y  A +Y  +A+E +  +    A+ +  LG +Y ++G  D+ I
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN----AEAWYNLGNAYYKQGDYDEAI 63
Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
             ++ A++L P    AW NLG+AY K+ D   A++ +++ L   PNN  A+
Sbjct: 64  EYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAK 114

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276
           D  + A+ +  LG +Y ++G   K I  ++ A++L P   +AW NLG+AY K+ D + A+
Sbjct: 4   DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 277 KAFEEVLLFDPNNKVARPRR 296
           + +++ L  DPNN  A  RR
Sbjct: 64  EYYQKALELDPNNAKAWYRR 83

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
           SA  ++ LG    ++  Y  A +Y  +A+E     D   A+ +  LG +Y ++G  D+ I
Sbjct: 34  SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAI 89
Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287
             ++ A++L P    AW NLG+AY K+ D   A++ +++ L  DP
Sbjct: 90  EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276
           D  + A+ +  LG +Y ++G  D+ I  ++ A++L P    AW NLG+AY K+ D   A+
Sbjct: 4   DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 277 KAFEEVLLFDPNNKVAR 293
           + +++ L  DPNN  A+
Sbjct: 64  EYYQKALELDPNNAEAK 80

>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 153 TFFVIRQVLVRRELDLSAKELQEQ-VRSGDASATEYFELGAVMLRRKFYPAATKYLLQAI 211
            ++    V V +E+   AK++ E+ +R+G  +   ++ LG V+++ +    A  YL +A+
Sbjct: 93  AYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152
Query: 212 EKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD 271
           E  + D +   Q     G+    EG LD+ +SQF    +  PG+  A+ N G  Y  K++
Sbjct: 153 ELNENDTEARFQ----FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN 208
Query: 272 LKSALKAFEEVLLFDPNNKVA 292
            + AL+  ++ +   P++ +A
Sbjct: 209 REKALEMLDKAIDIQPDHMLA 229

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
           A+ +  LG +Y ++G  D+ I  ++ A++L P    AW NLG+AY K+ D   A++ +++
Sbjct: 3   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 282 VLLFDPNN 289
            L  DP +
Sbjct: 63  ALELDPRS 70

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 208 LQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE 267
           L+AIE       + A  ++ LG  +  +G++   I  FE AV L P ++ A+ NLG+  +
Sbjct: 159 LKAIET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 268 KKKDLKSALKAFEEVLLFDPNNKV 291
           + +    A+ A+   L   PN+ V
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAV 238

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
           A  Y  LG+ Y   G+ DK I  +E  + ++PG++ A+ ++G AYE K     A+K F
Sbjct: 107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 14/68 (20%), Positives = 40/68 (58%)
Query: 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
           + A  ++ L     ++GKL + +  ++ A+++ P +  A++N+G+  ++ +D++ AL+ +
Sbjct: 41  EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY 100
Query: 280 EEVLLFDP 287
              +  +P
Sbjct: 101 TRAIQINP 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-19
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-16
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-18
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-18
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-17
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-18
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-17
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-16
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-14
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-17
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-17
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-16
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-17
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-13
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-17
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-16
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-08
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-16
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-16
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-16
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-15
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-15
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-10
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-15
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-15
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	7e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-15
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-15
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-14
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-14
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-14
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-10
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-14
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-14
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-13
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-14
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-14
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-14
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-13
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-10
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-13
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-07
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-13
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-13
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-12
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-12
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-08
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-07
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-11
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-11
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	5e-11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	8e-11
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-11
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	5e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-10
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-10
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	6e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	5e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-07
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	5e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	5e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	1e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	1e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	8e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	9e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	9e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-05
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	1e-05
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	4e-05
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	8e-05
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	1e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-04

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 83.9 bits (208), Expect = 6e-19
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           +   G +++++     A +    A+++    D     +Y  +G  +  +G     I   E
Sbjct: 77  FEYYGKILMKKGQDSLAIQQYQAAVDR----DTTRLDMYGQIGSYFYNKGNFPLAIQYME 132

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
             ++        +  LG AY   K+   A  +F +VL   PN  + 
Sbjct: 133 KQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 14/109 (12%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 187 YFELGAVMLRRKFYPAATKYL---LQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           Y            Y  A K +      +       +  +  +   G   +++G+    I 
Sbjct: 40  YNRRAVCYYELAKYDLAQKDIETYFSKVNA----TKAKSADFEYYGKILMKKGQDSLAIQ 95

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           Q++ AV      +  +  +G  +  K +   A++  E+ +     +   
Sbjct: 96  QYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 76.5 bits (189), Expect = 2e-16
 Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 7/113 (6%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
           +    F     + +   Y  A +   +   K      +   +YN   V Y    K D   
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYYELAKYDLAQ 57

Query: 243 SQFET---AVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
              ET    V         +   G    KK     A++ ++  +  D      
Sbjct: 58  KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 69.2 bits (170), Expect = 9e-14
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           Y ++G+    +  +P A +Y+ + I           +V+  LG +Y    +  K  S F 
Sbjct: 111 YGQIGSYFYNKGNFPLAIQYMEKQIRP----TTTDPKVFYELGQAYYYNKEYVKADSSFV 166

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDL---KSALKAFEEVLLFDPNNKVA 292
             ++L+P     +     A   +        A   +E+++         
Sbjct: 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 15/121 (12%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV---REGKLD 239
               ++ELG      K Y  A    ++ +E       ++   Y     +      + K  
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLEL----KPNIYIGYLWRARANAAQDPDTKQG 196

Query: 240 KGISQFETAVKLQPG--------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV 291
                +E  +++            + A   +   Y   +D   A  A++ +L  DP NK 
Sbjct: 197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK 256

Query: 292 A 292
           A
Sbjct: 257 A 257

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 4/76 (5%)

Query: 200 YPAATKYLLQAIE----KWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY 255
              A  Y  + IE           +L +    +   Y       K  + ++  + L P  
Sbjct: 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254

Query: 256 VTAWNNLGDAYEKKKD 271
             A + L    E    
Sbjct: 255 KKAIDGLKMKLEHHHH 270

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 82.4 bits (204), Expect = 6e-18
 Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 6/136 (4%)

Query: 170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALG 229
             + +E+    D      FE G   L+    P A      A+++    D    + +  LG
Sbjct: 52  GYQFEEENPLRDHPQ--PFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLG 105

Query: 230 VSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
            +     +    IS     ++L+P   TA   L  ++  +   + A +   + L + P  
Sbjct: 106 TTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165

Query: 290 KVARPRRDALKDRVPL 305
                  +       L
Sbjct: 166 AHLVTPAEEGAGGAGL 181

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 73.1 bits (180), Expect = 8e-15
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 3/124 (2%)

Query: 170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALG 229
                E+   G         LG+++     +    +  L A+   D    D   V   LG
Sbjct: 168 LVTPAEEGAGGAGLGPSKRILGSLLSDSL-FLEVKELFLAAVR-LDPTSID-PDVQCGLG 224

Query: 230 VSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
           V +   G+ DK +  F  A+ ++P     WN LG         + A+ A+   L   P  
Sbjct: 225 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284

Query: 290 KVAR 293
             +R
Sbjct: 285 IRSR 288

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                 LG +      Y  A      A+        +   ++N LG +     + ++ ++
Sbjct: 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQSEEAVA 272

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV 303
            +  A++LQPGY+ +  NLG +       + A++ F E L     ++  R    A+ + +
Sbjct: 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332

Query: 304 PLYKGV 309
                +
Sbjct: 333 WSTLRL 338

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 17/119 (14%)

Query: 176 QVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE 235
            VR  D     + +LGA +        A     +A+E          +    LG+S +  
Sbjct: 245 SVRPNDYLL--WNKLGATLANGNQSEEAVAAYRRALEL----QPGYIRSRYNLGISCINL 298

Query: 236 GKLDKGISQFETAVKLQPGYVTA-----------WNNLGDAYEKKKDLKSALKAFEEVL 283
           G   + +  F  A+ +Q                 W+ L  A        +   A    L
Sbjct: 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 79.4 bits (196), Expect = 8e-18
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 12/122 (9%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIE------------KWDGDDQDLAQVYNALGV 230
           S  E  +  +  +       A  Y  Q I               D + +  +++   L +
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 231 SYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK 290
           +Y +    DK    ++  ++  P  V       +    +   K AL+ +E++L  + +N 
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

Query: 291 VA 292
            A
Sbjct: 123 AA 124

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 79.0 bits (195), Expect = 1e-17
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 5/122 (4%)

Query: 173 LQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY 232
                ++ + S+    EL     + + Y  A  +  + ++K      +      A     
Sbjct: 43  WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK----APNNVDCLEACAEMQ 98

Query: 233 VREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY-EKKKDLKSALKAFEEVLLFDPNNKV 291
           V  G+    +  +E  ++L+   + A   LG+ Y    +  K  L+   + L      + 
Sbjct: 99  VCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY 158

Query: 292 AR 293
           AR
Sbjct: 159 AR 160

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 75.2 bits (185), Expect = 3e-16
 Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 5/108 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL-DKGISQF 245
                 + + R     A +   + ++     + D       LG  Y    +   K +   
Sbjct: 91  LEACAEMQVCRGQEKDALRMYEKILQL----EADNLAANIFLGNYYYLTAEQEKKKLETD 146

Query: 246 ETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
              +        A    G +       + A  + ++V+L  P+ +  +
Sbjct: 147 YKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 78.6 bits (195), Expect = 9e-18
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 4/112 (3%)

Query: 181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240
           D     Y + G    +   Y  A   L Q  +     D     V   LG++YV+ G +D+
Sbjct: 5   DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAFDVDVALHLGIAYVKTGAVDR 60

Query: 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           G    E ++   P  V     LG  Y + +    A+    +V   +P N   
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 75.2 bits (186), Expect = 1e-16
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
              LG   ++ + Y  A   L++  E     +     V   LGV+    G+ D+ I  F+
Sbjct: 79  ATVLGLTYVQVQKYDLAVPLLIKVAEA----NPINFNVRFRLGVALDNLGRFDEAIDSFK 134

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A+ L+P        +  +YE+    + AL  F++    D    V 
Sbjct: 135 IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
              LG   ++       T+ L +++     D  D  +V   LG++YV+  K D  +    
Sbjct: 45  ALHLGIAYVKTGAVDRGTELLERSLA----DAPDNVKVATVLGLTYVQVQKYDLAVPLLI 100

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
              +  P        LG A +       A+ +F+  L   PN 
Sbjct: 101 KVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 70.2 bits (173), Expect = 1e-14
 Identities = 17/77 (22%), Positives = 28/77 (36%)

Query: 216 GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA 275
           G+D      Y   G+S+ + G+  + +   E         V    +LG AY K   +   
Sbjct: 2   GNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRG 61

Query: 276 LKAFEEVLLFDPNNKVA 292
            +  E  L   P+N   
Sbjct: 62  TELLERSLADAPDNVKV 78

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.8 bits (107), Expect = 9e-06
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
            F LG  +     +  A      A+        +  +V+ A+  SY + G+ ++ +  F+
Sbjct: 113 RFRLGVALDNLGRFDEAIDSFKIALGL----RPNEGKVHRAIAFSYEQMGRHEEALPHFK 168

Query: 247 TAVKLQPGYVTAWNNL 262
            A +L  G       +
Sbjct: 169 KANELDEGASVELALV 184

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 82.6 bits (204), Expect = 1e-17
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 4/119 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIE---KWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
             ELG V   +     A  +   A+    K   +++  A  +  LG +Y +    D  I 
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP-RRDALKD 301
                + L          +   Y  KK    A+    E L   PN  +A    + AL++
Sbjct: 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 79.9 bits (197), Expect = 7e-17
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 4/110 (3%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
            A  +  +G   L       A +Y  ++       D      +     S+  EG+ D+ I
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTM----DPQFGPAWIGFAHSFAIEGEHDQAI 427

Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           S + TA +L  G    +  LG  + +  ++  A +  +        + + 
Sbjct: 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 71.8 bits (176), Expect = 4e-14
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 13/121 (10%)

Query: 176 QVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE 235
           ++  G      Y  LG   ++      A +YL  +        Q    + N LGV    +
Sbjct: 435 RLFQGTHLP--YLFLGMQHMQLGNILLANEYLQSSYAL----FQYDPLLLNELGVVAFNK 488

Query: 236 GKLDKGISQFETAVKL-------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
             +   I+ F+ A+ L       +  +   W NLG AY K K   +A+ A  + LL   N
Sbjct: 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548

Query: 289 N 289
           +
Sbjct: 549 D 549

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.3 bits (172), Expect = 1e-13
 Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 4/103 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           Y    A +                +++      + A  + A+G+ Y+   K+ +    F 
Sbjct: 342 YPLHLASLHESGEKNKLYLISNDLVDR----HPEKAVTWLAVGIYYLCVNKISEARRYFS 397

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
            +  + P +  AW     ++  + +   A+ A+          
Sbjct: 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 4/109 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           +            +  A      A        Q     Y  LG+ +++ G +       +
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARL----FQGTHLPYLFLGMQHMQLGNILLANEYLQ 465

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR 295
           ++  L        N LG     K D+++A+  F+  LL     +     
Sbjct: 466 SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 4/103 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
                  +  R  +        + +E     D     VY     S    G+ +K      
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEI----DPYNLDVYPLHLASLHESGEKNKLYLISN 363

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
             V   P     W  +G  Y     +  A + F +    DP  
Sbjct: 364 DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.9 bits (158), Expect = 9e-12
 Identities = 7/125 (5%), Positives = 31/125 (24%), Gaps = 4/125 (3%)

Query: 168 LSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNA 227
           +         +   A     + L       +      +  L +I       +  + +   
Sbjct: 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING----LEKSSDLLLC 310

Query: 228 LGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287
              +     +    ++     +++ P  +  +     +  +  +         +++   P
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370

Query: 288 NNKVA 292
              V 
Sbjct: 371 EKAVT 375

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 18/132 (13%), Positives = 44/132 (33%), Gaps = 17/132 (12%)

Query: 170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAA------------TKYLLQAIEKWDGD 217
           AK L  +    + S+   +     +++   +  A             +     +   DG 
Sbjct: 136 AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195

Query: 218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALK 277
            +  A +    G  Y      D+    ++ A+ +      A++ L   +     L +A +
Sbjct: 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH-----LLTADE 250

Query: 278 AFEEVLLFDPNN 289
            ++ VL  + + 
Sbjct: 251 EWDLVLKLNYST 262

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 20/140 (14%), Positives = 37/140 (26%), Gaps = 21/140 (15%)

Query: 169 SAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNAL 228
            A  + E+V     +  + F L  V      Y  A   L +        ++  A  Y A 
Sbjct: 102 CAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL----YNRSSACRYLA- 156

Query: 229 GVSYVREGKLDKGISQFETAVKLQPGY----------------VTAWNNLGDAYEKKKDL 272
               V+       ++        +                    +     G  Y    + 
Sbjct: 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216

Query: 273 KSALKAFEEVLLFDPNNKVA 292
             A + ++E L+ D     A
Sbjct: 217 DRAKECYKEALMVDAKCYEA 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 79.9 bits (198), Expect = 1e-17
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A E    G     +  +P A K   + I++      + A+ Y+    +  +     + I+
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEAIA 194

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A++  P +V A+     A    K+  SAL+  +     D      
Sbjct: 195 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 14/107 (13%), Positives = 30/107 (28%), Gaps = 4/107 (3%)

Query: 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQF 245
                  ++ + +      K            + + A+     G  Y  +      +  +
Sbjct: 107 TEHRTADILTKLRNAEKELKKAEAEAYV----NPEKAEEARLEGKEYFTKSDWPNAVKAY 162

Query: 246 ETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
              +K  P     ++N   A  K      A+    + +  DPN   A
Sbjct: 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 74.9 bits (185), Expect = 7e-16
 Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 5/118 (4%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A +    G    + + +  A ++  +A E      +D+    N    +   +G+ +  IS
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWEL----HKDIT-YLNNRAAAEYEKGEYETAIS 59

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD 301
               AV+        +  +  ++ +  +    L   ++ + +   +       D L  
Sbjct: 60  TLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK 117

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.7 bits (156), Expect = 6e-12
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 221 LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE 280
           +A    A G  + +  + D+ I  +  A +L     T  NN   A  +K + ++A+    
Sbjct: 4   MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLN 62

Query: 281 EVLLFDPNNKVA 292
           + +      +  
Sbjct: 63  DAVEQGREMRAD 74

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 6/93 (6%)

Query: 181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240
           DA    Y    A + +   +P A     +AIEK    D +  + Y     + +   +   
Sbjct: 172 DARG--YSNRAAALAKLMSFPEAIADCNKAIEK----DPNFVRAYIRKATAQIAVKEYAS 225

Query: 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLK 273
            +   + A           +         K  +
Sbjct: 226 ALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 3/36 (8%), Positives = 11/36 (30%)

Query: 253 PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
                     G+ + K +    A++ + +      +
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD 37

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 24/112 (21%), Positives = 41/112 (36%)

Query: 181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240
           + S  +   L   +            + Q +      D + AQ+    GV Y   G    
Sbjct: 2   NTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRAL 61

Query: 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
             + F  A+ ++P     +N LG    +  +  +A +AF+ VL  DP    A
Sbjct: 62  ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 76.6 bits (189), Expect = 2e-16
 Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 4/117 (3%)

Query: 173 LQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY 232
           L  +  + D  A   +E G +         A     QA+        D+ +V+N LG+  
Sbjct: 32  LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYL 87

Query: 233 VREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
            + G  D     F++ ++L P Y  A  N G A       K A          DPN+
Sbjct: 88  TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 69.6 bits (171), Expect = 6e-14
 Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 3/116 (2%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
              L     +     A  + L Q  EK D +      V   LG     +  +++  +   
Sbjct: 148 SLWLYLAEQKLDEKQAK-EVLKQHFEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADAT 205

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA-RPRRDALKD 301
               L          LG  Y    DL SA   F+  +  + +N V  R     L  
Sbjct: 206 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSL 261

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 5/95 (5%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
            F LG  +  +                     + L++    LG  Y+  G LD   + F+
Sbjct: 185 EFYLGN-ISEQTLMERLKADATDNTSL----AEHLSETNFYLGKYYLSLGDLDSATALFK 239

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
            AV                       +  L   ++
Sbjct: 240 LAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           +  LG  + +   + AA +     +E     D      +   G++    G+         
Sbjct: 80  FNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQDDLL 135

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
              +  P        L  A  +K D K A +  ++        +  
Sbjct: 136 AFYQDDPNDPFRSLWLYLAE-QKLDEKQAKEVLKQHFEKSDKEQWG 180

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 81.0 bits (201), Expect = 2e-17
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A  Y  LG V   R     A ++   A+        D    Y  L  + V  G ++  + 
Sbjct: 67  AEAYSNLGNVYKERGQLQEAIEHYRHALRL----KPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            + +A++  P      ++LG+  +    L+ A   + + +   PN  VA
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
           +      L ++  + +    +  +   AI++    +  LA+ Y+ LG  Y   G+L + I
Sbjct: 32  NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEAI 87

Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
             +  A++L+P ++  + NL  A     D++ A++A+   L ++P+    
Sbjct: 88  EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 80.7 bits (200), Expect = 3e-17
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 4/103 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           Y  L A ++       A +  + A++     + DL  V + LG      G+L++  + + 
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQY----NPDLYCVRSDLGNLLKALGRLEEAKACYL 159

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
            A++ QP +  AW+NLG  +  + ++  A+  FE+ +  DPN 
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           Y  L   +  +     A      A+          A   N L      +G +++ +  + 
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRL----CPTHADSLNNLANIKREQGNIEEAVRLYR 329

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A+++ P +  A +NL    +++  L+ AL  ++E +   P    A
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
             +LG ++        A    L+AIE       + A  ++ LG  +  +G++   I  FE
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            AV L P ++ A+ NLG+  ++ +    A+ A+   L   PN+ V 
Sbjct: 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 77.6 bits (192), Expect = 3e-16
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           Y  LG V+   + +  A    L+A+        + A V+  L   Y  +G +D  I  + 
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSL----SPNHAVVHGNLACVYYEQGLIDLAIDTYR 261

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A++LQP +  A+ NL +A ++K  +  A   +   L   P +  +
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 77.2 bits (191), Expect = 4e-16
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           +  LG V   +     A  +  +A+      D +    Y  LG         D+ ++ + 
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAVAAYL 227

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
            A+ L P +     NL   Y ++  +  A+  +   +   P+ 
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.4 bits (189), Expect = 6e-16
 Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           +  L  V   +     A     +AIE            Y  L  +   +G + +    + 
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIEL----QPHFPDAYCNLANALKEKGSVAEAEDCYN 295

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           TA++L P +  + NNL +   ++ +++ A++ + + L   P    A
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.0 bits (188), Expect = 9e-16
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
             EL     +   + AA ++ +Q   +    + D   V   L   + +  +LD+      
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFST 57

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A+K  P    A++NLG+ Y+++  L+ A++ +   L   P+    
Sbjct: 58  LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.9 bits (159), Expect = 5e-12
 Identities = 15/85 (17%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
              L  +   +     A +   +A+E       + A  ++ L     ++GKL + +  ++
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKD 271
            A+++ P +  A++N+G+  ++ +D
Sbjct: 364 EAIRISPTFADAYSNMGNTLKEMQD 388

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 4/127 (3%)

Query: 166 LDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVY 225
           +  S K       +        FE G   L+    P    ++  AI +    D   A+ +
Sbjct: 47  VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAW 102

Query: 226 NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285
             LG++          I   +  ++LQP  + A   L  +Y      + A +A +  +  
Sbjct: 103 QFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162

Query: 286 DPNNKVA 292
           +P  K  
Sbjct: 163 NPKYKYL 169

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 70.5 bits (173), Expect = 6e-14
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 189 ELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETA 248
            +    +         +  L+A    +GD  D   +   LGV +   G+ ++ I  F  A
Sbjct: 182 RMSKSPVDSSVLEGVKELYLEAAH-QNGDMID-PDLQTGLGVLFHLSGEFNRAIDAFNAA 239

Query: 249 VKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
           + ++P   + WN LG         + A++A+   L   P    +R
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 4/110 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                 LG +      +  A      A+        +   ++N LG +     + ++ + 
Sbjct: 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTV----RPEDYSLWNRLGATLANGDRSEEAVE 268

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
            +  A+++QPG++ +  NLG +       + A+  F   L     ++  +
Sbjct: 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQ 318

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 4/94 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           +  LG      +   AA   L + +E       +  +   AL VSY             +
Sbjct: 102 WQFLGITQAENENEQAAIVALQRCLEL----QPNNLKALMALAVSYTNTSHQQDACEALK 157

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE 280
             +K  P Y     N   +    + +  +     
Sbjct: 158 NWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 4/94 (4%)

Query: 203 ATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY----VTA 258
           A   +    E WD    +  ++     +S  +E +    +S  E                
Sbjct: 8   AKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPG 67

Query: 259 WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               G    K+ DL   +   E  +L DP +  A
Sbjct: 68  AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEA 101

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 176 QVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE 235
            VR  D S   +  LGA +        A +   +A+E          +    LG+S +  
Sbjct: 241 TVRPEDYSL--WNRLGATLANGDRSEEAVEAYTRALEI----QPGFIRSRYNLGISCINL 294

Query: 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAY 266
           G   + +S F TA+ LQ            A 
Sbjct: 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAI 325

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 75.5 bits (187), Expect = 4e-17
 Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 4/103 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           ++ LG    ++  Y  A +Y  +A+E     D   A+ +  LG +Y ++G  D+ I  ++
Sbjct: 38  WYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
            A++L P    AW NLG+AY K+ D   A++ +++ L  DP +
Sbjct: 94  KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 72.0 bits (178), Expect = 7e-16
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           ++ LG    ++  Y  A +Y  +A+E     D   A+ +  LG +Y ++G  D+ I  ++
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A++L P    AW NLG+AY K+ D   A++ +++ L  DP +  A
Sbjct: 60  KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 69.3 bits (171), Expect = 7e-15
 Identities = 23/68 (33%), Positives = 41/68 (60%)

Query: 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
           A+ +  LG +Y ++G  D+ I  ++ A++L P    AW NLG+AY K+ D   A++ +++
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 282 VLLFDPNN 289
            L  DP +
Sbjct: 61  ALELDPRS 68

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 258 AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           AW NLG+AY K+ D   A++ +++ L  DP +  A
Sbjct: 3   AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 37

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 75.1 bits (185), Expect = 4e-17
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 202 AATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNN 261
           A T+ L   + +      D   +   LG +Y    + D  +     A+   P Y  AW  
Sbjct: 3   AITERLEAMLAQ----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW 58

Query: 262 LGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRR 296
           LG   + + D   A +A+E  L    +    +  +
Sbjct: 59  LGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 12/55 (21%), Positives = 19/55 (34%)

Query: 238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           +     + E  +      +     LG  Y + +   +AL      L FDP   VA
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 79.3 bits (196), Expect = 6e-17
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                E G  ML+      A        +       +  + + +LG++     K    I 
Sbjct: 21  HENPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAENEKDGLAII 76

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A  L P  +     L  ++  + +  +AL +    LL  P  +  
Sbjct: 77  ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 4/113 (3%)

Query: 181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240
           D                  Y      L  A+E     + + AQ++ +LGV Y      D 
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM----NPNDAQLHASLGVLYNLSNNYDS 190

Query: 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
             +    AV+L+P     WN LG         + AL A+   L  +P      
Sbjct: 191 AAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 176 QVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE 235
           ++   DA    +  LG +      Y +A   L +A+E       D AQ++N LG +    
Sbjct: 166 EMNPNDAQL--HASLGVLYNLSNNYDSAAANLRRAVEL----RPDDAQLWNKLGATLANG 219

Query: 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            +  + +  +  A+ + PGYV    N+  +Y        A K     +         
Sbjct: 220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 19/118 (16%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           +  LG      +    A   L  A       D     V+ AL VS+  E   +  ++   
Sbjct: 58  WRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHAALAVSHTNEHNANAALASLR 113

Query: 247 TAVKLQPGYVTAWN---------------NLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
             +  QP Y    +               +    +    + +         L  +PN+
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 8/105 (7%)

Query: 176 QVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE 235
           ++R  DA    + +LGA +        A     +A++     +    +V   + VSY   
Sbjct: 200 ELRPDDAQL--WNKLGATLANGNRPQEALDAYNRALDI----NPGYVRVMYNMAVSYSNM 253

Query: 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK--KDLKSALKA 278
            + D    Q   A+ +Q G  T          +      +  L  
Sbjct: 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 12/57 (21%), Positives = 19/57 (33%)

Query: 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           G + +  + +         Y       G +  K  +L  A  AFE V    P  + A
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEA 57

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 79.8 bits (197), Expect = 7e-17
 Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 4/106 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
              Y  +  +M  R        Y  +A++     D + + VY   G         D+   
Sbjct: 270 VNSYIYMALIMADRNDSTEYYNYFDKALKL----DSNNSSVYYHRGQMNFILQNYDQAGK 325

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
            F+ A +L P  +  +  L     ++         F E     P  
Sbjct: 326 DFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 76.3 bits (188), Expect = 1e-15
 Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 6/112 (5%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A    + G    R K Y  A KY   A+E      +D    Y+ L   YV  G L K + 
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALEL----KED-PVFYSNLSACYVSVGDLKKVVE 60

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF-DPNNKVARP 294
               A++L+P Y         A E       A+     + L  D N+    P
Sbjct: 61  MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 75.6 bits (186), Expect = 2e-15
 Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 5/109 (4%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A      G     +     A + + +AIE            Y  + +         +  +
Sbjct: 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----FPRVNSYIYMALIMADRNDSTEYYN 291

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            F+ A+KL     + + + G      ++   A K F++    DP N   
Sbjct: 292 YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 75.2 bits (185), Expect = 3e-15
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 13/122 (10%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
              Y +L  +  R   +        +A  K      +  +V N        +   DK + 
Sbjct: 338 IFPYIQLACLAYRENKFDDCETLFSEAKRK----FPEAPEVPNFFAEILTDKNDFDKALK 393

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEK---------KKDLKSALKAFEEVLLFDPNNKVARP 294
           Q++ A++L+      +  +     K          ++   A    E+    DP ++ A+ 
Sbjct: 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI 453

Query: 295 RR 296
             
Sbjct: 454 GL 455

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 75.2 bits (185), Expect = 3e-15
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           Y+  G +    + Y  A K   +A E     D +    Y  L     RE K D   + F 
Sbjct: 307 YYHRGQMNFILQNYDQAGKDFDKAKEL----DPENIFPYIQLACLAYRENKFDDCETLFS 362

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A +  P      N   +    K D   ALK ++  +  +      
Sbjct: 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 13/116 (11%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE------- 235
           +         ++  +  +  A K    AIE     +  L  +Y  +     +        
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIEL----ENKLDGIYVGIAPLVGKATLLTRNP 426

Query: 236 --GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
                 +  +  E A KL P    A   L     +++D+  A+  FEE        
Sbjct: 427 TVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276
           +    A      G  + R  K D  I  +  A++L+   V  ++NL   Y    DLK  +
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVV 59

Query: 277 KAFEEVLLFDPNNKVARPRR 296
           +   + L   P+      RR
Sbjct: 60  EMSTKALELKPDYSKVLLRR 79

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 58.6 bits (142), Expect = 8e-10
 Identities = 12/105 (11%), Positives = 34/105 (32%), Gaps = 1/105 (0%)

Query: 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE-GKLDKGISQ 244
            +F +    L    Y  + +   + +       +   + Y+    S+ +     ++ + +
Sbjct: 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225

Query: 245 FETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
                KL+     +  + G     K D   A +  ++ +   P  
Sbjct: 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV 270

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAW 259
           +  AT  L +A +     D    Q    L    +++  +D+ I+ FE +  L        
Sbjct: 431 FIEATNLLEKASKL----DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486

Query: 260 NNLGDAYEKKKDLKSALKAFEEV 282
             +   + +   ++  +++   +
Sbjct: 487 QAI--TFAEAAKVQQRIRSDPVL 507

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 12/128 (9%), Positives = 24/128 (18%), Gaps = 7/128 (5%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
              Y  L A  +         +   +A+E       D ++V      +    GK    + 
Sbjct: 39  PVFYSNLSACYVSVGDLKKVVEMSTKALEL----KPDYSKVLLRRASANEGLGKFADAMF 94

Query: 244 QFETAVKL---QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALK 300
                          +          +    LK      +              +    K
Sbjct: 95  DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK 154

Query: 301 DRVPLYKG 308
                   
Sbjct: 155 QENLPSVT 162

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 77.2 bits (191), Expect = 8e-17
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           ++ LG V+++ +    A  YL +A+E     +++  +     G+    EG LD+ +SQF 
Sbjct: 128 FYMLGTVLVKLEQPKLALPYLQRAVEL----NENDTEARFQFGMCLANEGMLDEALSQFA 183

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
              +  PG+  A+ N G  Y  K++ + AL+  ++ +   P++ +A
Sbjct: 184 AVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 8/131 (6%)

Query: 166 LDLSAKELQEQVRSGDASATEYFELGAVMLRRKF----YPAATKYLLQAIEKWDGDDQDL 221
           +  S              +      G   + R      Y  A +   +AIE+    +++ 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE----NKED 56

Query: 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
           A  Y           +L++ ++ ++ A++L     TA+   G+ Y  K+  K A   FE+
Sbjct: 57  AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116

Query: 282 VLLFDPNNKVA 292
            L     N   
Sbjct: 117 ALRAGMENGDL 127

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 75.6 bits (187), Expect = 3e-16
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           Y     ++        A  +  +A+E     D   A  Y   G  YV +    +    FE
Sbjct: 60  YINFANLLSSVNELERALAFYDKALEL----DSSAATAYYGAGNVYVVKEMYKEAKDMFE 115

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A++        +  LG    K +  K AL   +  +  + N+  A
Sbjct: 116 KALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 74.9 bits (185), Expect = 6e-16
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           Y+  G V + ++ Y  A     +A+        +   ++  LG   V+  +    +   +
Sbjct: 94  YYGAGNVYVVKEMYKEAKDMFEKALRA----GMENGDLFYMLGTVLVKLEQPKLALPYLQ 149

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            AV+L      A    G     +  L  AL  F  V   DP +  A
Sbjct: 150 RAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
            F+ G  +        A        E+    D   A  +   GV+Y  +   +K +   +
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVTEQ----DPGHADAFYNAGVTYAYKENREKALEMLD 217

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKD 271
            A+ +QP ++ A +           
Sbjct: 218 KAIDIQPDHMLALHAKKLLGHHHHH 242

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQF 245
              E G  ML+      A        +K    + +  + + +LG++     K    I   
Sbjct: 19  NPMEEGLSMLKLANLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 246 ETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
             A  L P  +     L  ++  + +  +AL +    LL  P 
Sbjct: 75  NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 66.7 bits (163), Expect = 4e-14
 Identities = 14/66 (21%), Positives = 26/66 (39%)

Query: 228 LGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287
            G+S ++   L +    FE   + +P    AW +LG    + +    A+ A     + DP
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 288 NNKVAR 293
            +    
Sbjct: 83  KDIAVH 88

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 4/91 (4%)

Query: 165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV 224
            L  +A   +   +        +  LG      +    A   L  A       D     V
Sbjct: 32  NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAV 87

Query: 225 YNALGVSYVREGKLDKGISQFETAVKLQPGY 255
           + AL VS+  E   +  ++     +  QP Y
Sbjct: 88  HAALAVSHTNEHNANAALASLRAWLLSQPQY 118

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
           A A      G   ++ + + AA  +  +AIE     +   A  +     +Y + G     
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL----NPANAVYFCNRAAAYSKLGNYAGA 65

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD 301
           +   E A+ + P Y  A+  +G A         A+  +++ L  DP+N+  +      + 
Sbjct: 66  VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

Query: 302 RV 303
           ++
Sbjct: 126 KL 127

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 16/80 (20%), Positives = 30/80 (37%)

Query: 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276
           +D   A+     G   ++    +  +  +  A++L P     + N   AY K  +   A+
Sbjct: 7   EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66

Query: 277 KAFEEVLLFDPNNKVARPRR 296
           +  E  +  DP    A  R 
Sbjct: 67  QDCERAICIDPAYSKAYGRM 86

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 4/125 (3%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
                            Y AA  +L + +E         A++       +++EG+  K I
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEV----CVWDAELRELRAECFIKEGEPRKAI 174

Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR 302
           S  + A KL+     A+  +   Y +  D + +L    E L  D ++K        +K  
Sbjct: 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234

Query: 303 VPLYK 307
             L +
Sbjct: 235 NKLIE 239

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 4/119 (3%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
           A   ++ ELG  +L       A      A++     D D    Y      ++  GK    
Sbjct: 1   ADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAA 56

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALK 300
           +      + L+  +  A    G    K+  L  A   F++VL  +P+ +  +     L 
Sbjct: 57  LPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 1/116 (0%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
             E    ++R   Y  AT      ++      +   +    +   + ++ K  + I    
Sbjct: 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP-RRDALKD 301
             ++++P  V A  +  +AY  ++    A++ +E     + N++  R     A + 
Sbjct: 297 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 13/119 (10%), Positives = 33/119 (27%), Gaps = 16/119 (13%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
                   ++      A   L  A +       D  + +  +   Y + G  +  +S+  
Sbjct: 157 RELRAECFIKEGEPRKAISDLKAASKL----KSDNTEAFYKISTLYYQLGDHELSLSEVR 212

Query: 247 TAVKLQPGYVTAWNNL------------GDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
             +KL   +   + +              +   +      A   +E V+  +P+     
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT 271

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 20/126 (15%), Positives = 35/126 (27%), Gaps = 19/126 (15%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
           +   Y+    V L      AA   L + I        D        G   +++GKLD+  
Sbjct: 36  NYIAYYRRATVFLAMGKSKAALPDLTKVIAL----KMDFTAARLQRGHLLLKQGKLDEAE 91

Query: 243 SQFETAVKLQPGYVTAWNNLGD---------------AYEKKKDLKSALKAFEEVLLFDP 287
             F+  +K  P                                D  +A+   +++L    
Sbjct: 92  DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV 151

Query: 288 NNKVAR 293
            +   R
Sbjct: 152 WDAELR 157

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 4/87 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
              +     + +    A +   + ++     + D          +Y+ E   D+ I  +E
Sbjct: 275 KERICHCFSKDEKPVEAIRICSEVLQM----EPDNVNALKDRAEAYLIEEMYDEAIQDYE 330

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLK 273
            A +           L  A    K  +
Sbjct: 331 AAQEHNENDQQIREGLEKAQRLLKQSQ 357

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 77.8 bits (192), Expect = 3e-16
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 6/120 (5%)

Query: 170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALG 229
            K L    R   A A +    G      K +  A KY   AIE     D +    Y+ + 
Sbjct: 13  LKGLSPSQR--QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPVFYSNIS 66

Query: 230 VSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
             Y+  G L+K I     A++++P +  A      A E   +   A+     + L    +
Sbjct: 67  ACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFD 126

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 76.3 bits (188), Expect = 1e-15
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 4/109 (3%)

Query: 181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240
             +   Y  L   +  ++      K+  +A++     + +    Y   G  Y        
Sbjct: 273 HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL----NPEYPPTYYHRGQMYFILQDYKN 328

Query: 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
               F+ A  L P  V  +  L     K+     +   F E  L  P  
Sbjct: 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.8 bits (184), Expect = 4e-15
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A      G     +     A   L ++I             Y  L ++   +    +   
Sbjct: 243 ALALCYTGIFHFLKNNLLDAQVLLQESINL-----HPTPNSYIFLALTLADKENSQEFFK 297

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            F+ AV L P Y   + + G  Y   +D K+A + F++    +P N   
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.4 bits (183), Expect = 5e-15
 Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           Y+  G +    + Y  A +   +A       + +    Y  L     ++GK  +  + F 
Sbjct: 313 YYHRGQMYFILQDYKNAKEDFQKAQSL----NPENVYPYIQLACLLYKQGKFTESEAFFN 368

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
                 P          +    + D  +A+K ++     +   +  
Sbjct: 369 ETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.0 bits (182), Expect = 6e-15
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 1/103 (0%)

Query: 200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAW 259
           +      + Q         Q  A      G  +      ++ I  ++ A++L P     +
Sbjct: 3   HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFY 62

Query: 260 NNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRR-DALKD 301
           +N+   Y    DL+  ++   + L   P++  A  RR  A + 
Sbjct: 63  SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 70.5 bits (173), Expect = 9e-14
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 20/122 (16%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           Y +L  ++ ++  +  +  +  +   K       L +V           G  D  I Q++
Sbjct: 347 YIQLACLLYKQGKFTESEAFFNETKLK----FPTLPEVPTFFAEILTDRGDFDTAIKQYD 402

Query: 247 TAVKLQPGYVTAWNNLGDAYEK----------------KKDLKSALKAFEEVLLFDPNNK 290
            A +L+         +G    K                ++   +A+K   +    DP ++
Sbjct: 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462

Query: 291 VA 292
            A
Sbjct: 463 QA 464

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 68.6 bits (168), Expect = 4e-13
 Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 20/123 (16%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGV------------ 230
                     ++  R  +  A K    A       ++   +++  +G             
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRL----EEVQEKIHVGIGPLIGKATILARQS 432

Query: 231 ----SYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD 286
               + + E K +  I     A +L P    A   L     + + +  A++ FE+  +  
Sbjct: 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492

Query: 287 PNN 289
              
Sbjct: 493 RTM 495

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 2/90 (2%)

Query: 200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAW 259
           Y  A   L  A+++             A  +           +S       L+     A 
Sbjct: 189 YDTAYALLSDALQRLY--SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALAL 246

Query: 260 NNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
              G  +  K +L  A    +E +   P  
Sbjct: 247 CYTGIFHFLKNNLLDAQVLLQESINLHPTP 276

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 236 GKLDKGISQFETAVKLQP----GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV 291
           G    G         L P     Y     N G+ +   K+   A+K ++  +  DPN  V
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 292 A 292
            
Sbjct: 61  F 61

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 6/109 (5%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                      L  + + AA K L +A E     D    Q    L    ++  K+D+ I 
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACEL----DPRSEQAKIGLAQLKLQMEKIDEAIE 483

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            FE +  L              + +   ++  L+A   +          
Sbjct: 484 LFEDSAILARTMDEKLQAT--TFAEAAKIQKRLRADPIISAKMELTLAR 530

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 8/104 (7%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           Y  + A  +         ++  +A+E       D ++       +    G     +    
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEI----KPDHSKALLRRASANESLGNFTDAMFDL- 116

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK 290
           + + L   +  A           K    A+K   E L  D    
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQ---AMKVLNENLSKDEGRG 157

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 76.9 bits (190), Expect = 4e-16
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 187 YFELGAV-MLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQF 245
           +F +G   ++       A +YL +A       ++     + A G S+  E + D+ ++ +
Sbjct: 93  WFAVGCYYLMVGHKNEHARRYLSKATTL----EKTYGPAWIAYGHSFAVESEHDQAMAAY 148

Query: 246 ETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            TA +L  G       +G  Y    + K A + F + L   P +   
Sbjct: 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 76.6 bits (189), Expect = 5e-16
 Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL-----AQVYNALGVSYVREGKLDKG 241
             E+G V  +   +  A K+ L A+EK      ++       + N LG    +  K  + 
Sbjct: 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           +     A+ L P   + ++ +G  +    + ++A+  F   L    ++  +
Sbjct: 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
              LG V  + K Y  A  Y  QA+          A  Y+A+G  +   G  +  +  F 
Sbjct: 239 LNNLGHVCRKLKKYAEALDYHRQALVL----IPQNASTYSAIGYIHSLMGNFENAVDYFH 294

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE 280
           TA+ L+     +   LG   E       A    +
Sbjct: 295 TALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 19/130 (14%), Positives = 33/130 (25%), Gaps = 21/130 (16%)

Query: 184 ATEYFELGAVMLRRKFYPA----------------ATKYLLQAIEKWDGDDQDLAQVYNA 227
           A  Y    A  L + + PA                A      A +      +        
Sbjct: 110 ARRYLSK-ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL----MKGCHLPMLY 164

Query: 228 LGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287
           +G+ Y            F  A+ + P      + +G    +  + K+A K F + L    
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224

Query: 288 NNKVARPRRD 297
                     
Sbjct: 225 AIGNEVTVDK 234

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 18/122 (14%), Positives = 31/122 (25%), Gaps = 5/122 (4%)

Query: 169 SAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNAL 228
           S   + E V     +      L         +    K     +EK    D   A      
Sbjct: 7   SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHASCLPVH 62

Query: 229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY-EKKKDLKSALKAFEEVLLFDP 287
             + V   K ++        V L P    +W  +G  Y       + A +   +    + 
Sbjct: 63  IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122

Query: 288 NN 289
             
Sbjct: 123 TY 124

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 7/74 (9%), Positives = 20/74 (27%)

Query: 219 QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKA 278
           Q+   V  +L   +                ++  P + +          +          
Sbjct: 19  QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYL 78

Query: 279 FEEVLLFDPNNKVA 292
             +++   P+N V+
Sbjct: 79  SHKLVDLYPSNPVS 92

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 74.4 bits (183), Expect = 5e-16
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 7/106 (6%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A   +  G +   +K +         A++ +       +++   +G  Y     + +   
Sbjct: 6   AISLWNEGVLAADKKDWK-------GALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEK 58

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
            F  ++        A+   G  Y + +    A+K  +E L+    N
Sbjct: 59  AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 20/120 (16%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
            F +G +    K    A K   ++I +    D+ LA  Y   G+ Y +  K D  I   +
Sbjct: 40  CFNIGCMYTILKNMTEAEKAFTRSINR----DKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95

Query: 247 TAVKLQPGYVT----------------AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK 290
            A+    G                      N+   Y KK++ K A +            +
Sbjct: 96  EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL 284
               GV    +      +  F     +Q  +     N+G  Y   K++  A KAF   + 
Sbjct: 9   LWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 65

Query: 285 FDPNNKVA 292
            D +  VA
Sbjct: 66  RDKHLAVA 73

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 74.6 bits (184), Expect = 7e-16
 Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
               G  +  +K Y  A + LL+A +  D    + ++V+  LG+  ++  K  +    FE
Sbjct: 108 LNNYGGFLYEQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFE 165

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
            +++L     +    + D   K+++   A + ++        N
Sbjct: 166 KSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           +    + ++ R  +      L +  +       +    Y  LG+ Y++ G  ++      
Sbjct: 7   HHHHSSGLVPRGSHMGDQNPL-KTDK----GRDEARDAYIQLGLGYLQRGNTEQAKVPLR 61

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
            A+++ P    A   L   ++ + + K A + + + L  D  N
Sbjct: 62  KALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 72.3 bits (178), Expect = 6e-15
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240
           D +   Y +LG   L+R     A   L +A+E     D   A  + AL V +  E +   
Sbjct: 34  DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTEMEPKL 89

Query: 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
              ++  A+          NN G    ++K  + A +   E  
Sbjct: 90  ADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 6/108 (5%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           +  L  V         A +   +A+      D   A+V N  G     + + ++   +  
Sbjct: 74  HAALAVVFQTEMEPKLADEEYRKALAS----DSRNARVLNNYGGFLYEQKRYEEAYQRLL 129

Query: 247 TAVK--LQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A +  L P     + NLG    + K    A + FE+ L  + N    
Sbjct: 130 EASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV 177

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 12/107 (11%), Positives = 35/107 (32%), Gaps = 4/107 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           +  LG V L+ K    A +Y  +++      +++   V   +     +E +       ++
Sbjct: 144 FENLGLVSLQMKKPAQAKEYFEKSLRL----NRNQPSVALEMADLLYKEREYVPARQYYD 199

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
              +       +        +  +D  +A     ++    P +   +
Sbjct: 200 LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 76.6 bits (189), Expect = 7e-16
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 4/120 (3%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
           A   ++ ELG  +L       A      A++     D D    Y      ++  GK    
Sbjct: 24  ADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAA 79

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD 301
           +      ++L+  +  A    G    K+  L  A   F++VL  +P+    +  +  L  
Sbjct: 80  LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 5/141 (3%)

Query: 167 DLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN 226
           +   KE Q Q+   D                  Y AA  +L + +E         A++  
Sbjct: 127 ENEEKEAQSQLIKSDE-MQRLRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRE 181

Query: 227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD 286
                +++EG+  K IS  + A KL+     A+  +   Y +  D + +L    E L  D
Sbjct: 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241

Query: 287 PNNKVARPRRDALKDRVPLYK 307
            ++K        +K    L +
Sbjct: 242 QDHKRCFAHYKQVKKLNKLIE 262

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 16/111 (14%), Positives = 42/111 (37%)

Query: 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQF 245
           +  E    ++R   Y  AT      ++      +   +    +   + ++ K  + I   
Sbjct: 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318

Query: 246 ETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRR 296
              ++++P  V A  +  +AY  ++    A++ +E     + N++  R   
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 208 LQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE 267
           L     +     D  + +  LG   +  G+L   +SQF  AV   P    A+      + 
Sbjct: 13  LGTENLYFQSMAD-VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL 71

Query: 268 KKKDLKSALKAFEEVLLFDPNNKVARPRR 296
                K+AL    +V+    +   AR +R
Sbjct: 72  AMGKSKAALPDLTKVIQLKMDFTAARLQR 100

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 13/119 (10%), Positives = 33/119 (27%), Gaps = 16/119 (13%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
                   ++      A   L  A +       D  + +  +   Y + G  +  +S+  
Sbjct: 180 RELRAECFIKEGEPRKAISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVR 235

Query: 247 TAVKLQPGYVTAWNNL------------GDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
             +KL   +   + +              +   +      A   +E V+  +P+     
Sbjct: 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 19/129 (14%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
           +   Y+    V L      AA   L + I+       D        G   +++GKLD+  
Sbjct: 59  NYIAYYRRATVFLAMGKSKAALPDLTKVIQL----KMDFTAARLQRGHLLLKQGKLDEAE 114

Query: 243 SQFETAVKLQPGYVTAWN---------------NLGDAYEKKKDLKSALKAFEEVLLFDP 287
             F+  +K  P                      +         D  +A+   +++L    
Sbjct: 115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174

Query: 288 NNKVARPRR 296
            +   R  R
Sbjct: 175 WDAELRELR 183

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 12/104 (11%), Positives = 29/104 (27%), Gaps = 4/104 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
              +     + +    A +   + ++     + D          +Y+ E   D+ I  +E
Sbjct: 298 KERICHCFSKDEKPVEAIRVCSEVLQM----EPDNVNALKDRAEAYLIEEMYDEAIQDYE 353

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK 290
           TA +           L  A    K  +         +  +   +
Sbjct: 354 TAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 76.4 bits (188), Expect = 1e-15
 Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 4/129 (3%)

Query: 165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV 224
           +      +L+  VR        +  L    L      A    + + +           + 
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL----HPGHPEA 59

Query: 225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL 284
              LG     + +  +     + A    P +      LG A E     ++A  A+     
Sbjct: 60  VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119

Query: 285 FDPNNKVAR 293
             P      
Sbjct: 120 LLPEEPYIT 128

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 14/57 (24%), Positives = 21/57 (36%)

Query: 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               + + Q   AV+ +P    AW  L DA     D  +   A +  L   P +  A
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA 59

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 4/104 (3%)

Query: 163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLA 222
             +       +Q  +            LG V   ++ +  A   L QA +       +  
Sbjct: 36  MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA----APEHP 91

Query: 223 QVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY 266
            +   LG +    G+ +   + +  A +L P        L +  
Sbjct: 92  GIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 16/153 (10%)

Query: 139 LSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGD--ASATEYFELGAVMLR 196
           LS     +  LG+G+             +      Q+   S    +   E    G  +  
Sbjct: 9   LSASAENVSSLGLGSG--------GGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCN 60

Query: 197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL----- 251
                A   +   AI+    D + L+ +Y+ LG +Y   G  +K +   +  + L     
Sbjct: 61  AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120

Query: 252 -QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
            + G   +  NLG+  +       A    E  L
Sbjct: 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
                 LG   +    +  A ++  +   +    G+ +  AQ   +LG +Y    + +  
Sbjct: 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322

Query: 242 ISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           I      + +      + G   A  +LG+A+      + ALK  E+ L
Sbjct: 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 190 LGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFET 247
           LG        + AA ++  +   I +  GD     +  + LG S++  G+ +     ++ 
Sbjct: 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

Query: 248 AVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
            + L      +     +  +LG+ Y    +  +A++     L
Sbjct: 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 10/129 (7%)

Query: 172 ELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALG 229
           +   +     ++   Y +LG        Y  A +Y      + K   D    A+    LG
Sbjct: 76  QAGTEDLRTLSAI--YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133

Query: 230 VSYVREGKLDKGISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
            +    G+ D+     E  + L      +     A  NLG+ Y  K          +   
Sbjct: 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193

Query: 284 LFDPNNKVA 292
                   A
Sbjct: 194 DVKEALTRA 202

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 14/95 (14%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 197 RKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL--- 251
           ++    A ++  +   + +  GD     +    LG +Y   G     I   +  +++   
Sbjct: 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255

Query: 252 ---QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
              +     A +NLG+++      + A + ++  L
Sbjct: 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 25/125 (20%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGK---- 237
           A     LG  +     +  A     +   + +  GD     +    LG  Y  +GK    
Sbjct: 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185

Query: 238 -------------LDKGISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKA 278
                        L + +  ++  +KL      +     A  NLG+ Y    D ++A++ 
Sbjct: 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245

Query: 279 FEEVL 283
            +E L
Sbjct: 246 HQERL 250

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNA 227
           A EL E  R  +A +   + LG        +  A +Y  +   I +  GD    A+   +
Sbjct: 293 AVELGE--REVEAQS--CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWS 348

Query: 228 LGVSYVREGKLDKGISQFETAVKL 251
           LG ++   G  ++ +   E  ++L
Sbjct: 349 LGNAHSAIGGHERALKYAEQHLQL 372

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 70.9 bits (175), Expect = 1e-15
 Identities = 26/74 (35%), Positives = 44/74 (59%)

Query: 219 QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKA 278
            + A+ +  LG +Y ++G  D+ I  ++ A++L P    AW NLG+AY K+ D   A++ 
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 279 FEEVLLFDPNNKVA 292
           +++ L  DPNN  A
Sbjct: 66  YQKALELDPNNAEA 79

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 67.8 bits (167), Expect = 2e-14
 Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           ++ LG    ++  Y  A +Y  +A+E     D + A+ +  LG +Y ++G  D+ I  ++
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A++L P    AW NLG+AY K+ D   A++ +++ L  DPNN  A
Sbjct: 68  KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 56.6 bits (138), Expect = 2e-10
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           ++ LG    ++  Y  A +Y  +A+E     D + A+ +  LG +Y ++G  D+ I  ++
Sbjct: 46  WYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101

Query: 247 TAVKLQPGYVTAWNNLGDAYEKK 269
            A++L P    A  NLG+A +K+
Sbjct: 102 KALELDPNNAEAKQNLGNAKQKQ 124

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 14/73 (19%), Positives = 30/73 (41%)

Query: 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276
           +D +      AL   +++     + ++ FE  V+  P YV  + +LG  YE+      A+
Sbjct: 2   EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61

Query: 277 KAFEEVLLFDPNN 289
             + + +      
Sbjct: 62  DTYAQGIEVAREE 74

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
            + L    L+      A     + +E     D D    Y  LG  Y R  + D  I  + 
Sbjct: 10  RYALAQEHLKHDNASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYA 65

Query: 247 TAVKLQPGYVTA--WNNLGDAYEKKKDLKSA 275
             +++     T    + L DA  K + L+  
Sbjct: 66  QGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 70.9 bits (174), Expect = 2e-15
 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 8/144 (5%)

Query: 173 LQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY 232
           L       + +  + + LG    +   +  A K            D   A+ +  LG   
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML----DHYDARYFLGLGACR 62

Query: 233 VREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
              G  ++ +  +     +         +  + + +  DL  A   F             
Sbjct: 63  QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ--- 119

Query: 293 RPRRDALKDRVPLYKGVPVKSKDR 316
            P  +AL  R           KDR
Sbjct: 120 -PAHEALAARAGAMLEAVTARKDR 142

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 69.3 bits (171), Expect = 3e-15
 Identities = 25/71 (35%), Positives = 43/71 (60%)

Query: 219 QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKA 278
            + A+ +  LG +Y ++G  D+ I  ++ A++L P    AW NLG+AY K+ D   A++ 
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 279 FEEVLLFDPNN 289
           +++ L  DPNN
Sbjct: 66  YQKALELDPNN 76

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 55.9 bits (136), Expect = 2e-10
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           ++ LG    ++  Y  A +Y  +A+E     D + A+ +  LG +Y ++G  D+ I  ++
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 247 TAVKLQPGYVTAWNNLGDAYEKK 269
            A++L P    A  NLG+A +K+
Sbjct: 68  KALELDPNNAEAKQNLGNAKQKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 40.1 bits (95), Expect = 7e-05
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 253 PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
                AW NLG+AY K+ D   A++ +++ L  DPNN  A
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 74.3 bits (182), Expect = 5e-15
 Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 4/135 (2%)

Query: 171 KELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD---GDDQDLAQVYNA 227
           ++LQ  V         YFE  +V    +      + + + +++ +   G  Q  AQ    
Sbjct: 48  QKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALML 107

Query: 228 LGVSYVREGKLDK-GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD 286
            G +                 AVKL+P  V AWN LG+ Y KK D+ SA   F   L   
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167

Query: 287 PNNKVARPRRDALKD 301
            N    +     L+ 
Sbjct: 168 KNKVSLQNLSMVLRQ 182

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 60.8 bits (147), Expect = 1e-10
 Identities = 19/146 (13%), Positives = 46/146 (31%), Gaps = 16/146 (10%)

Query: 170 AKELQEQVRSGDASATEYFELGAVM--LRRKFYPAATKYLLQAIEKWDG---DDQDLAQV 224
           A        +   +      L  V+  L+       +++++ ++ +       D    + 
Sbjct: 156 AHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215

Query: 225 YNALGVSYVRE--------GKLDKGISQFETAVKLQ---PGYVTAWNNLGDAYEKKKDLK 273
           +  LG +Y+              + +S +  A K+            N    ++ ++   
Sbjct: 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275

Query: 274 SALKAFEEVLLFDPNNKVARPRRDAL 299
            AL+ F +    DP     + R   L
Sbjct: 276 EALEGFSQAAALDPAWPEPQQREQQL 301

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 7/107 (6%)

Query: 183 SATEYFELGAVMLRRKFYPAAT-KYLLQAIE------KWDGDDQDLAQVYNALGVSYVRE 235
               ++ LG   L   F      K   QA+       K D        ++      +  E
Sbjct: 212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE 271

Query: 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEV 282
               + +  F  A  L P +           E    L S L++  + 
Sbjct: 272 ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 71.0 bits (175), Expect = 8e-15
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           + + G V         A   L QA+       +D  ++ +AL   Y+  G+LD+ ++Q+ 
Sbjct: 121 HLQRGLVYALLGERDKAEASLKQALAL-----EDTPEIRSALAELYLSMGRLDEALAQYA 175

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
            A++  P  +        A   K   + A +A         +
Sbjct: 176 KALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 69.5 bits (171), Expect = 3e-14
 Identities = 18/71 (25%), Positives = 27/71 (38%)

Query: 219 QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKA 278
           Q   Q    LGV     G+ D  ++ FE A+K  P    A   L     K   +  AL+ 
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 279 FEEVLLFDPNN 289
            + ++   P  
Sbjct: 62  GKTLVARTPRY 72

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 68.3 bits (168), Expect = 8e-14
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 5/114 (4%)

Query: 180 GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239
            +A    Y +       + +   A   L  A       +   A ++   G+ Y   G+ D
Sbjct: 80  SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV----NPRYAPLHLQRGLVYALLGERD 135

Query: 240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
           K  +  + A+ L+       + L + Y     L  AL  + + L   P +   R
Sbjct: 136 KAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR 188

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 15/121 (12%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
           +      LG  +     Y AA     +A+++    +    +    L  + ++ G ++  +
Sbjct: 4   AEQNPLRLGVQLYALGRYDAALTLFERALKE----NPQDPEALYWLARTQLKLGLVNPAL 59

Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEK-----------KKDLKSALKAFEEVLLFDPNNKV 291
              +T V   P Y+  +  L +AY             K  L+ AL   ++    +P    
Sbjct: 60  ENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP 119

Query: 292 A 292
            
Sbjct: 120 L 120

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 15/113 (13%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV-----------RE 235
            + L    L+      A +     + +           Y  L  +YV            +
Sbjct: 42  LYWLARTQLKLGLVNPALENGKTLVAR----TPRYLGGYMVLSEAYVALYRQAEDRERGK 97

Query: 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
           G L++ +S  + A ++ P Y       G  Y    +   A  + ++ L  +  
Sbjct: 98  GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 180 GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239
           G AS  E    G  + +     A   +   A++    D + L+ +Y+ LG +Y       
Sbjct: 1   GSASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 60

Query: 240 KGISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           K +      + L      Q G   A  NLG+  +   +   A+   +  L
Sbjct: 61  KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
              +  LG        +  A     Q   I K  GD     + Y+ LG +Y+  G+ +  
Sbjct: 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242

Query: 242 ISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
              ++  + L      +     +  +LG+ Y   +D + A+    + L
Sbjct: 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
              Y  LG   +    +  A++Y  +   + +   D    AQ   +LG +Y      +K 
Sbjct: 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282

Query: 242 ISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           I      + +      + G   A  +LG+AY    +   A+   E+ L
Sbjct: 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 8/111 (7%)

Query: 181 DASATEYFELGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGKL 238
                           R    AA     +   +    GD     + +  LG ++   G  
Sbjct: 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 199

Query: 239 DKGISQFETAVKLQ------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
              +   E  + +            A++NLG+AY    + ++A + +++ L
Sbjct: 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 10/120 (8%)

Query: 170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNA 227
           A ++  +     ++   Y +LG        Y  A +Y      + +  GD    A+    
Sbjct: 31  AVQVGTEDLKTLSAI--YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88

Query: 228 LGVSYVREGKLDKGISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
           LG +    G  D+ I   +  + +      + G   A  NLG+ Y  K          + 
Sbjct: 89  LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 28/128 (21%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGK---- 237
           A     LG  +     +  A     +   I +   D    A+    LG  Y  +GK    
Sbjct: 83  AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142

Query: 238 ----------------LDKGISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSA 275
                           L   +  +E  + L      +     A+ NLG+ +    + + A
Sbjct: 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202

Query: 276 LKAFEEVL 283
           + A E+ L
Sbjct: 203 VIAHEQRL 210

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 68.5 bits (168), Expect = 1e-14
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A    +LG    ++K +  A  +  +AIE     D      YN     Y  E K  + + 
Sbjct: 8   AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----DPSNITFYNNKAAVYFEEKKFAECVQ 63

Query: 244 QFETAVKLQP-------GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRR 296
             E AV++             A +  G+A++K+ DL  A++ F   L    + ++ +  +
Sbjct: 64  FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVK 123

Query: 297 DALK 300
           +  K
Sbjct: 124 ELEK 127

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 14/79 (17%), Positives = 31/79 (39%)

Query: 218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALK 277
             D A     LG +  ++   +K    ++ A++L P  +T +NN    Y ++K     ++
Sbjct: 4   MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63

Query: 278 AFEEVLLFDPNNKVARPRR 296
             E+ +      +      
Sbjct: 64  FCEKAVEVGRETRADYKLI 82

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 5/102 (4%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
            +    +L    +R + Y  AT  +  A++     D      +      Y      DK  
Sbjct: 7   VSNIKTQLAMEYMRGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQYLKVNDKAQ 62

Query: 243 SQFETAVKLQPGYVTAWNNLGDA-YEKKKDLKSALKAFEEVL 283
             F  A+ ++P      NN G     +      ++  F++ L
Sbjct: 63  ESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 69.6 bits (171), Expect = 4e-14
 Identities = 15/77 (19%), Positives = 30/77 (38%)

Query: 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276
               ++ +   L + Y+R     +  +  E A+K  P    AW    + Y+  K    A 
Sbjct: 3   KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62

Query: 277 KAFEEVLLFDPNNKVAR 293
           ++F + L   P++    
Sbjct: 63  ESFRQALSIKPDSAEIN 79

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAW 259
              +  Y  +A+   D             G+   ++G+     +  + ++  QP +  A+
Sbjct: 93  PAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF 150

Query: 260 NNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
             L         L  A   F++        
Sbjct: 151 KELARTKMLAGQLGDADYYFKKYQSRVEVL 180

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 62.7 bits (153), Expect = 9e-12
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 7/109 (6%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVS-YVREGKLDKGISQF 245
           +     +    K    A +   QA+        D A++ N  G     R  +  + ++ F
Sbjct: 45  WLVRAEIYQYLKVNDKAQESFRQALSI----KPDSAEINNNYGWFLCGRLNRPAESMAYF 100

Query: 246 ETAVK--LQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           + A+     P    A  N G    K+     A    +  L   P    A
Sbjct: 101 DKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA 149

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 6/102 (5%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
               G    ++  +  A  YL +++             +  L  + +  G+L      F+
Sbjct: 116 NLNKGICSAKQGQFGLAEAYLKRSLAA----QPQFPPAFKELARTKMLAGQLGDADYYFK 171

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
                          LG    K   L +A  A+E       N
Sbjct: 172 KYQSRVEVLQADDLLLGWKIAKA--LGNAQAAYEYEAQLQAN 211

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 67.6 bits (166), Expect = 3e-14
 Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A      G    ++  YP A K+  +AI++    +   A++Y+     Y +  +    + 
Sbjct: 16  ALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKDAKLYSNRAACYTKLLEFQLALK 71

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
             E  ++L+P ++  +     A E  KD   A+  +++ L  D + K A 
Sbjct: 72  DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAA 121

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 17/72 (23%), Positives = 31/72 (43%)

Query: 218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALK 277
           + DLA +    G    ++G   + +  +  A+K  P     ++N    Y K  + + ALK
Sbjct: 12  NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71

Query: 278 AFEEVLLFDPNN 289
             EE +  +P  
Sbjct: 72  DCEECIQLEPTF 83

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 72.2 bits (176), Expect = 3e-14
 Identities = 19/106 (17%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
              L  +   +     A +   +A+E       + A  ++ L     ++GKL + +  ++
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYK 67

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A+++ P +  A++N+G+  ++ +D++ AL+ +   +  +P    A
Sbjct: 68  EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA 113

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 71.0 bits (173), Expect = 8e-14
 Identities = 18/128 (14%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 166 LDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVY 225
           ++ + +  ++ +      A  +  L +V+ ++     A  +  +AI          A  Y
Sbjct: 25  IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----SPTFADAY 80

Query: 226 NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285
           + +G +      +   +  +  A+++ P +  A +NL   ++   ++  A+ ++   L  
Sbjct: 81  SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140

Query: 286 DPNNKVAR 293
            P+   A 
Sbjct: 141 KPDFPDAY 148

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 64.1 bits (155), Expect = 1e-11
 Identities = 14/70 (20%), Positives = 32/70 (45%)

Query: 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
             A   N L      +G +++ +  +  A+++ P +  A +NL    +++  L+ AL  +
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66

Query: 280 EEVLLFDPNN 289
           +E +   P  
Sbjct: 67  KEAIRISPTF 76

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 59.8 bits (144), Expect = 3e-10
 Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A  Y  +G  +   +    A +   +AI+     +   A  ++ L   +   G + + I+
Sbjct: 77  ADAYSNMGNTLKEMQDVQGALQCYTRAIQI----NPAFADAHSNLASIHKDSGNIPEAIA 132

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD 301
            + TA+KL+P +  A+ NL    +   D     +  ++++    +             
Sbjct: 133 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPH 190

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 8/42 (19%), Positives = 20/42 (47%)

Query: 251 LQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
             P +  + NNL +   ++ +++ A++ + + L   P    A
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 45

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
           AS  E    G  + +     A   +   A++    D + L+ +Y+ LG +Y       K 
Sbjct: 7   ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKA 66

Query: 242 ISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           +      + L      Q G   A  NLG+  +   +   A+   +  L
Sbjct: 67  LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 190 LGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFET 247
           LG        +  A     Q   I K  GD     + Y+ LG +Y+  G+ +     ++ 
Sbjct: 193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252

Query: 248 AVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
            + L      +     +  +LG+ Y   +D + A+    + L
Sbjct: 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 215 DGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ----PGYVTAWNNLGDAYEKKK 270
            G  +         G    + G    G+S FE AV++           ++ LG+AY    
Sbjct: 2   PGSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH 61

Query: 271 DLKSALKAFEEVL 283
           D   AL+     L
Sbjct: 62  DYAKALEYHHHDL 74

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWD--GDDQDLAQVYNALGVSYVREGKLDKG 241
              Y  LG   +    +  A++Y  + +       D    AQ   +LG +Y      +K 
Sbjct: 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286

Query: 242 ISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           I      + +      + G   A  +LG+AY    +   A+   E+ L
Sbjct: 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 8/95 (8%)

Query: 197 RKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL--- 251
           R    AA  +  +   +    GD     + +  LG ++   G     +   E  + +   
Sbjct: 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219

Query: 252 ---QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
              +     A++NLG+AY    + ++A + +++ L
Sbjct: 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 10/120 (8%)

Query: 170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD--GDDQDLAQVYNA 227
           A ++  +     ++   Y +LG        Y  A +Y    +      GD    A+    
Sbjct: 35  AVQVGTEDLKTLSAI--YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92

Query: 228 LGVSYVREGKLDKGISQFETAVKLQ------PGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
           LG +    G  D+ I   +  + +        G   A  NLG+ Y  K          + 
Sbjct: 93  LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 15/115 (13%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
           A   + LG      + Y  A  Y L+   I +   D     +   +LG +Y   G  D+ 
Sbjct: 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326

Query: 242 ISQFETAVKL------QPGYVTAWNN-------LGDAYEKKKDLKSALKAFEEVL 283
           +   E  +++      + G +TA  N       LG +Y     + S     +  L
Sbjct: 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSL 381

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 28/128 (21%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGK---- 237
           A     LG  +     +  A     +   I +   D    A+    LG  Y  +GK    
Sbjct: 87  AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 146

Query: 238 ----------------LDKGISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSA 275
                           L   +  +E  + L      +     A+ NLG+ +    + + A
Sbjct: 147 PGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206

Query: 276 LKAFEEVL 283
           + A E+ L
Sbjct: 207 VIAHEQRL 214

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 64.8 bits (159), Expect = 2e-13
 Identities = 11/111 (9%), Positives = 35/111 (31%), Gaps = 8/111 (7%)

Query: 181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240
           +     Y+  G +      Y  +     +AI+     D + ++ +   G +     + ++
Sbjct: 5   NPEE--YYLEGVLQYDAGNYTESIDLFEKAIQL----DPEESKYWLMKGKALYNLERYEE 58

Query: 241 GISQFETAVKLQPGY--VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
            +  +   + +         W    DA    +  +   +  E     + ++
Sbjct: 59  AVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 62.1 bits (152), Expect = 2e-12
 Identities = 15/71 (21%), Positives = 25/71 (35%)

Query: 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
            + Y   GV     G   + I  FE A++L P     W   G A    +  + A+  +  
Sbjct: 6   PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65

Query: 282 VLLFDPNNKVA 292
           V+    +    
Sbjct: 66  VINVIEDEYNK 76

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 12/109 (11%), Positives = 24/109 (22%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                         +        L QA                +          + + + 
Sbjct: 72  VVAIASHDGGKQALETVQRLLPVLCQAHGL----TPQQVVAIASHDGGKQALETVQRLLP 127

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A  L P  V A  +     +  + +++ L    +     P   VA
Sbjct: 128 VLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVA 176

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 68.2 bits (167), Expect = 5e-13
 Identities = 14/110 (12%), Positives = 25/110 (22%), Gaps = 4/110 (3%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
                   G      +        L QA                +          + + +
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGL----TPQQVVAIASHDGGKQALETVQRLL 364

Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
                A  L P  V A  + G   +  + ++  L    +     P   VA
Sbjct: 365 PVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 68.2 bits (167), Expect = 6e-13
 Identities = 13/109 (11%), Positives = 25/109 (22%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                         +        L QA         +      + G        + + + 
Sbjct: 344 VVAIASHDGGKQALETVQRLLPVLCQAHGL----TPEQVVAIASNGGGKQALETVQRLLP 399

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A  L P  V A  +     +  + ++  L    +     P   VA
Sbjct: 400 VLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.9 bits (166), Expect = 7e-13
 Identities = 14/106 (13%), Positives = 25/106 (23%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
               G      +        L QA                +          + + +    
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQAHGL----TPQQVVAIASNSGGKQALETVQRLLPVLC 300

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A  L P  V A  + G   +  + ++  L    +     P   VA
Sbjct: 301 QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.9 bits (166), Expect = 7e-13
 Identities = 13/109 (11%), Positives = 24/109 (22%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                         +        L QA         +      +          +   + 
Sbjct: 106 VVAIASHDGGKQALETVQRLLPVLCQAHGL----TPEQVVAIASHDGGKQALETVQALLP 161

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A  L P  V A  + G   +  + ++  L    +     P   VA
Sbjct: 162 VLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 210

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 66.7 bits (163), Expect = 2e-12
 Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
                      +   A    L QA         +      + G        + + +    
Sbjct: 143 IASHDGGKQALETVQALLPVLCQAHG----LTPEQVVAIASNGGGKQALETVQRLLPVLC 198

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A  L P  V A  + G   +  + ++  L    +     P   VA
Sbjct: 199 QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
               G      +        L QA         +      +          + + +    
Sbjct: 381 IASNGGGKQALETVQRLLPVLCQAHGL----TPEQVVAIASHDGGKQALETVQRLLPVLC 436

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A  L P  V A  + G      + + + L   +  L    N+ + 
Sbjct: 437 QAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.5 bits (160), Expect = 4e-12
 Identities = 14/106 (13%), Positives = 25/106 (23%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
               G      +        L QA                + G        + + +    
Sbjct: 211 IASNGGGKQALETVQRLLPVLCQAHGL----TPQQVVAIASNGGGKQALETVQRLLPVLC 266

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A  L P  V A  +     +  + ++  L    +     P   VA
Sbjct: 267 QAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.5 bits (160), Expect = 5e-12
 Identities = 13/109 (11%), Positives = 24/109 (22%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                         +        L QA                + G        + + + 
Sbjct: 276 VVAIASNSGGKQALETVQRLLPVLCQAHGL----TPQQVVAIASNGGGKQALETVQRLLP 331

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A  L P  V A  +     +  + ++  L    +     P   VA
Sbjct: 332 VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.8 bits (158), Expect = 7e-12
 Identities = 15/106 (14%), Positives = 26/106 (24%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
               G      +        L QA                + G        + + +    
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGL----TPQQVVAIASNGGGKQALETVQRLLPVLC 232

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A  L P  V A  + G   +  + ++  L    +     P   VA
Sbjct: 233 QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 278

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 8/95 (8%)

Query: 206 YLLQAIEKWD--------GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVT 257
             ++A+  W             +      +          + + +     A  L P  V 
Sbjct: 48  TAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVV 107

Query: 258 AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           A  +     +  + ++  L    +     P   VA
Sbjct: 108 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 142

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 203 ATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL 262
           A  Y  +AI       +DLA+ Y  LG ++   G+  K  +     VK  P +       
Sbjct: 9   AVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67

Query: 263 GDAYEKKKDLKSALKAFEEVLLFDPNNK 290
                     +  ++   +++    +++
Sbjct: 68  AMVLYNLGRYEQGVELLLKIIAETSDDE 95

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 236 GKLDKGISQFETAVKL---QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           G   + +  +E A+            +  LG  +    + + A       +   PN++  
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 293 RP 294
           R 
Sbjct: 64  RV 65

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 4/116 (3%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
             + +    G   + RK Y  A     QA+      +       +    +Y   G+ +K 
Sbjct: 9   PESDKLKSEGNAAMARKEYSKAIDLYTQALSI-APAN---PIYLSNRAAAYSASGQHEKA 64

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRD 297
               E A  + P Y  AW+ LG A     D K A +A+E+ +  + N      +R 
Sbjct: 65  AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 12/73 (16%), Positives = 24/73 (32%)

Query: 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276
                +    + G + +   +  K I  +  A+ + P      +N   AY      + A 
Sbjct: 6   APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAA 65

Query: 277 KAFEEVLLFDPNN 289
           +  E   + DP  
Sbjct: 66  EDAELATVVDPKY 78

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 64.8 bits (158), Expect = 4e-13
 Identities = 21/149 (14%), Positives = 43/149 (28%), Gaps = 17/149 (11%)

Query: 165 ELDLSAKELQEQVRSG----------DASATEYFELGAVMLRRKFYPAATKYLLQAIEKW 214
           E +  +  + + + SG          D    + +        +     A  +        
Sbjct: 7   ENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY- 65

Query: 215 DGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS 274
              D         L   Y  + +  +    +  A  L     T   + G    + K    
Sbjct: 66  ---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLK 122

Query: 275 ALKAFEEVLLFDPNNKV---ARPRRDALK 300
           A + FE V+    + K+   A+   DA++
Sbjct: 123 AKECFELVIQHSNDEKLKIKAQSYLDAIQ 151

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 64.2 bits (157), Expect = 5e-13
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 11/124 (8%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A +  ELG    ++K +  A K+  +A E     D             Y  +G  +K   
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKEL----DPTNMTYITNQAAVYFEKGDYNKCRE 59

Query: 244 QFETAVKLQPG-------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRR 296
             E A+++             A+  +G++Y K++  K A+  + + L       V +  +
Sbjct: 60  LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119

Query: 297 DALK 300
            A K
Sbjct: 120 QAEK 123

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 4/119 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
             E  E G   L       A +   +AI+     D     +Y+    +Y ++G   K   
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKAYE 59

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR 302
                V L+P +   ++    A E     + A + +EE L  + NN   +     ++ R
Sbjct: 60  DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A E         + K Y  A K+  QAIE    +  + A  Y    ++Y+R       + 
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIEL---NPSN-AIYYGNRSLAYLRTECYGYALG 68

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV 303
               A++L   Y+  +     +       ++AL+ +E V+   P++K A+ +       V
Sbjct: 69  DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 128

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 63.8 bits (155), Expect = 1e-12
 Identities = 16/121 (13%), Positives = 28/121 (23%), Gaps = 8/121 (6%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
            + L     +   Y  A              D   ++ +  LG      G+ D  I  + 
Sbjct: 24  LYSLAFNQYQSGXYEDAHXVFQALCVL----DHYDSRFFLGLGACRQAMGQYDLAIHSYS 79

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY 306
               +         +  +   +  +L  A            N     P    L  RV   
Sbjct: 80  YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN----XPEFXELSTRVSSM 135

Query: 307 K 307
            
Sbjct: 136 L 136

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 59.2 bits (143), Expect = 5e-11
 Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276
               L Q+Y+ L  +  + G  +     F+    L       +  LG   +       A+
Sbjct: 17  SSDTLEQLYS-LAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI 75

Query: 277 KAFEEVLLFDPNNKVA 292
            ++    + D      
Sbjct: 76  HSYSYGAVMDIXEPRF 91

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 7/57 (12%), Positives = 17/57 (29%)

Query: 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           G L  G        ++    +    +L     +    + A   F+ + + D  +   
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 228 LGVSYVREGKLDKGISQFETAVKLQPG-YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD 286
                + +G ++  +   E  ++ +P     A+  +G+AY K  D + AL  ++  +  +
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 287 PNNKVARPRR 296
           P++   + R+
Sbjct: 66  PDSPALQARK 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 12/84 (14%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQF 245
           +  +    ++ +     A + L + ++    +     + Y  +G +Y + G   K ++ +
Sbjct: 2   DQLKTIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNY 58

Query: 246 ETAVKLQPGY--VTAWNNLGDAYE 267
           ++A++L P    + A   + D   
Sbjct: 59  QSAIELNPDSPALQARKMVMDILN 82

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 65.3 bits (159), Expect = 5e-12
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 187 YFELGAVMLRRKFYP---AATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR----EGKLD 239
              L     R   +P    A   L QAI      + D   +   L +   +      +  
Sbjct: 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRL----NPDNQYLKVLLALKLHKMREEGEEEG 230

Query: 240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           +G    E A++  PG      +    Y +K +   A++  ++ L + PNN   
Sbjct: 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 23/122 (18%)

Query: 190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAV 249
           L  +    +      K + +A+EK       +  V  +    Y R+ + DK I   + A+
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEK----APGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274

Query: 250 KLQPGYVTAWNNLGDAYEKKKD-------------------LKSALKAFEEVLLFDPNNK 290
           +  P        +G  Y  K                     +  A+   ++    + N  
Sbjct: 275 EYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF 334

Query: 291 VA 292
             
Sbjct: 335 RV 336

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 61.9 bits (150), Expect = 6e-11
 Identities = 12/122 (9%), Positives = 31/122 (25%), Gaps = 23/122 (18%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG----- 241
                    R+     A + L +A+E       + A ++  +G  Y  +           
Sbjct: 250 LRSAAKFYRRKDEPDKAIELLKKALEY----IPNNAYLHCQIGCCYRAKVFQVMNLRENG 305

Query: 242 --------------ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287
                         ++  + A +         + L   +      + A   F++    + 
Sbjct: 306 MYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365

Query: 288 NN 289
             
Sbjct: 366 TP 367

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 26/131 (19%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL-DKGISQF 245
              L ++      Y  A  Y  +   K +        ++   G   + + K  DK I  F
Sbjct: 337 CSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF 395

Query: 246 ETAVKLQ------------------------PGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
              VK+                              A + L    E  + ++ A +  E 
Sbjct: 396 IEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455

Query: 282 VLLFDPNNKVA 292
            L        A
Sbjct: 456 GLESGSLIPSA 466

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKW----DGDDQDLAQVYNALGVSYVREGK- 237
           S   +     V            Y+ +              +  ++    G + ++ G  
Sbjct: 93  SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGN 152

Query: 238 -LDKGISQFETAVKLQPGYVTAWNNLGDAY---EKKKDLKSALKAFEEVLLFDPNNKVA 292
             ++    FE A++ +P      + L  A    +     ++A+    + +  +P+N+  
Sbjct: 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 52.6 bits (126), Expect = 6e-08
 Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 198 KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVT 257
           +    A  +L +A E     + +L +V + L   +    + ++    F+     +   V 
Sbjct: 314 ELIGHAVAHLKKADEA----NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369

Query: 258 AW---NNLGDAYE-KKKDLKSALKAFEEVLLFDPNNKVARPRRDALK 300
                   G+    + K    A+  F E +  +  ++     +D L+
Sbjct: 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 11/94 (11%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 173 LQEQVRSGDASATEYFELGAVMLRRKFYPA--ATKYLLQAIEKWDGDDQDLAQVYNALGV 230
              Q++  D +   + E   V + +K          L +  +     +   ++  + L  
Sbjct: 381 QLYQMKCEDKAIHHFIE--GVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAF 438

Query: 231 SYVREGKLDKGISQFETAVKLQPGYVTAWNNLGD 264
                 K+ +     E  ++      +A +  G+
Sbjct: 439 LQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 61.1 bits (149), Expect = 5e-12
 Identities = 21/110 (19%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
           A E    G    ++  YP A ++  +A+++    D + A +Y+       +  +  + + 
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----DPENAILYSNRAACLTKLMEFQRALD 68

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
             +T ++L   ++  +          ++   A +A+E+ L  DP+N+ AR
Sbjct: 69  DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 9/123 (7%)

Query: 170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIE---KWDGDDQDLAQVYN 226
           A++    V      A  +F++       K    +  ++LQA++             Q   
Sbjct: 127 AEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186

Query: 227 ALGVSYVREGKLDKGISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFE 280
            +  +Y      DK +   E A++L            +  N+ ++Y++  D + A++ F+
Sbjct: 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246

Query: 281 EVL 283
           +  
Sbjct: 247 KAA 249

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 11/125 (8%)

Query: 166 LDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD--GDDQDLAQ 223
           LD+        +R+        F +       K Y  A  +L  A+E      +D+ +A 
Sbjct: 168 LDIYQNHPLYSIRT----IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223

Query: 224 VYNALGVSYVREGKLDKGISQFETAVKLQ-----PGYVTAWNNLGDAYEKKKDLKSALKA 278
               +  SY R G     +  F+ A K+               L     K    + A + 
Sbjct: 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQF 283

Query: 279 FEEVL 283
            EE L
Sbjct: 284 IEEGL 288

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKW----DGDDQDLAQVYNALGVSYVREGKLDKGI 242
            F L   + +      A +++ + ++          ++L     A+    V E K+   +
Sbjct: 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323

Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           S FE    L         +    +E     + A   + +VL
Sbjct: 324 SYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 4/119 (3%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
             A E    G     +  +P A K   + I++      + A+ Y+    +  +     + 
Sbjct: 2   MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEA 57

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALK 300
           I+    A++  P +V A+     A    K+  SAL+  +     D         R+  +
Sbjct: 58  IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ 116

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 8/108 (7%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWD--GDDQDLAQVYNALGVSYVREGKLDKG 241
              +       L  K Y  A  +  +A    +     Q + +    +G+    + + +  
Sbjct: 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243

Query: 242 ISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           I  F+ A+ +       P    A+  +   + K   +  A +   + +
Sbjct: 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 10/152 (6%)

Query: 141 YLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFY 200
              L+L  L       I +     +L L   + Q +  +G       F  G   L ++ Y
Sbjct: 61  RHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQAR-LTGLLEYYFNFFRGMYELDQREY 119

Query: 201 PAATKYLLQAIEKWD--GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL------- 251
            +A K+  +A  K     D  + A+ +  +  SY    +    +     A ++       
Sbjct: 120 LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179

Query: 252 QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
               +   +     +   K  + A+  F++  
Sbjct: 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 5/118 (4%)

Query: 170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKW----DGDDQDLAQVY 225
           A  + E+     +    YF +  +  +      A +Y  + +       D       +  
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309

Query: 226 NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
            +L +S   E  +       E+   L         ++   Y ++K+ + A   F +V 
Sbjct: 310 KSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
           +S  +  + G  + +   Y  A     QA+   D   QD A ++      +++    DK 
Sbjct: 26  SSVEQLRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYDKA 84

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD 301
            ++   A++   G V A      A EK   L  A+   +  +  +P NKV +     +  
Sbjct: 85  ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144

Query: 302 RV 303
             
Sbjct: 145 PS 146

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 59.9 bits (145), Expect = 4e-11
 Identities = 21/146 (14%), Positives = 59/146 (40%), Gaps = 7/146 (4%)

Query: 158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD 217
            Q   ++  +   + LQ+++R+   ++ ++  LG   L +  Y  +     QA++   G+
Sbjct: 18  HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ-LRGE 76

Query: 218 DQDLAQVYNALGVSYVREGK---LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS 274
           + +   +Y AL      +       +  +  + A+ L    +TA   L      + +   
Sbjct: 77  NAE---LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQ 133

Query: 275 ALKAFEEVLLFDPNNKVARPRRDALK 300
           A++ +++V+  +          +++ 
Sbjct: 134 AIELWQKVMDLNSPRINRTQLVESIN 159

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 1/81 (1%)

Query: 213 KWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDL 272
           KW     +  +  + L   +  +   +  +   +  ++  P     W  LG+ Y  + D 
Sbjct: 2   KWQAVRAEYQRQRDPLH-QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDY 60

Query: 273 KSALKAFEEVLLFDPNNKVAR 293
            ++L A+ + L     N    
Sbjct: 61  SNSLLAYRQALQLRGENAELY 81

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 13/125 (10%)

Query: 170 AKELQEQV--RSGDASATEYFELGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVY 225
            ++ Q  +   +  + A   F LG V      +  A           +  GD     +  
Sbjct: 12  ERQAQALLAHPATASGA--RFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRAL 69

Query: 226 NALGVSYVREGKLDKGISQFETAVKL-------QPGYVTAWNNLGDAYEKKKDLKSALKA 278
           + +G+     G  D     F    +L                 +        DL  A + 
Sbjct: 70  HQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQE 129

Query: 279 FEEVL 283
           +E+ L
Sbjct: 130 YEKSL 134

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 8/89 (8%)

Query: 203 ATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL------QPG 254
           A  Y L     +         +     LG  Y    + D+  + F+   +          
Sbjct: 5   AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64

Query: 255 YVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
              A + +G       +  +A + F E  
Sbjct: 65  EHRALHQVGMVERMAGNWDAARRCFLEER 93

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 9/123 (7%)

Query: 170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAI---EKWDGDDQDLAQVYN 226
            ++  ++     A      ++G V      + AA +  L+          D    +    
Sbjct: 52  LQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAY 111

Query: 227 ALGVSYVREGKLDKGISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFE 280
            +    +  G L     ++E ++        Q     A+  LGD  +++K+L  A + + 
Sbjct: 112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171

Query: 281 EVL 283
              
Sbjct: 172 RAR 174

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 8/96 (8%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWD--GDDQDLAQVYNALGVSYVREGKLDKG 241
           +   +E+  V L       A +   +++       D   +A  +  LG    +E  L + 
Sbjct: 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166

Query: 242 ISQFETAVKL------QPGYVTAWNNLGDAYEKKKD 271
              +  A  +                L         
Sbjct: 167 QQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 58.7 bits (143), Expect = 8e-11
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQA--IEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
              Y  LG   +    +  A++Y  +   + +   D    AQ   +LG +Y      +K 
Sbjct: 49  RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 108

Query: 242 ISQFETAVKLQ------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           I      + +        G   A  +LG+AY    +   A+   E+ L
Sbjct: 109 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 216 GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL------QPGYVTAWNNLGDAYEKK 269
           G      + +  LG ++   G     +   E  + +      +     A++NLG+AY   
Sbjct: 3   GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL 62

Query: 270 KDLKSALKAFEEVL 283
            + ++A + +++ L
Sbjct: 63  GEFETASEYYKKTL 76

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 61.3 bits (148), Expect = 8e-11
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 7/113 (6%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKW------DGDDQDLAQVYNALGVSYVREGKLDK 240
             E   V + R       +  L A+           +  +L+ +Y    VS + +GK D+
Sbjct: 236 RAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDE 295

Query: 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
                 T + L+  ++  +  LG  YE K   + A  A+       P      
Sbjct: 296 SYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 46.6 bits (110), Expect = 5e-06
 Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 10/156 (6%)

Query: 131 ELFELGIQLS--YLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQ--EQVRSGDASATE 186
           EL    +Q S  +         V      +  L  ++L     E+     +   +  +  
Sbjct: 220 ELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSII 279

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           Y       L +     + + +   I+      +     Y  LG  Y  +G   +    + 
Sbjct: 280 YQIKAVSALVKGKTDESYQAINTGIDL-----EMSWLNYVLLGKVYEMKGMNREAADAYL 334

Query: 247 TAVKLQPGYVTA-WNNLGDAYEKKKDLKSALKAFEE 281
           TA  L+PG  T  W   G        +   L  F  
Sbjct: 335 TAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFLA 370

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 61.6 bits (149), Expect = 9e-11
 Identities = 15/109 (13%), Positives = 27/109 (24%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                  G      +        L QA         D      +          + + + 
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGL----TPDQVVAIASHDGGKQALETVQRLLP 349

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A  L P  V A  + G   +  + ++  L    +     P+  VA
Sbjct: 350 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 14/109 (12%), Positives = 26/109 (23%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                         +        L QA         D      +          + + + 
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHG----LPPDQVVAIASNIGGKQALETVQRLLP 281

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A  L P  V A  + G   +  + ++  L    +     P+  VA
Sbjct: 282 VLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA 330

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 14/109 (12%), Positives = 26/109 (23%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                         +        L QA         D      + G        + + + 
Sbjct: 260 VVAIASNIGGKQALETVQRLLPVLCQAHG----LTPDQVVAIASHGGGKQALETVQRLLP 315

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A  L P  V A  +     +  + ++  L    +     P+  VA
Sbjct: 316 VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 364

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 9e-10
 Identities = 13/111 (11%), Positives = 25/111 (22%), Gaps = 4/111 (3%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
           A               +        L QA                +          + + 
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHG----LTPAQVVAIASHDGGKQALETMQRL 245

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           +     A  L P  V A  +     +  + ++  L    +     P+  VA
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVA 296

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 12/106 (11%), Positives = 23/106 (21%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
                      +        L QA                +          + + +    
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAHGLT----PAQVVAIASHDGGKQALETVQRLLPVLC 657

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A  L P  V A  + G   +  + ++  L    +         VA
Sbjct: 658 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA 703

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 3e-09
 Identities = 13/109 (11%), Positives = 25/109 (22%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                         +        L QA         D      + G        + + + 
Sbjct: 633 VVAIASHDGGKQALETVQRLLPVLCQAHG----LTPDQVVAIASNGGGKQALETVQRLLP 688

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A  L    V A  +     +  + ++  L    +     P+  VA
Sbjct: 689 VLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVA 737

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 14/111 (12%), Positives = 24/111 (21%), Gaps = 4/111 (3%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
                                    L QA         D      + G        + + 
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGL----TPDQVVAIASNGGGKQALETVQRL 550

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           +     A  L P  V A  + G   +  + ++  L    +         VA
Sbjct: 551 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVA 601

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 3e-08
 Identities = 15/111 (13%), Positives = 27/111 (24%), Gaps = 4/111 (3%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
           A               +        L QA         D      +          + + 
Sbjct: 461 AQVVAIASHDGGKQALETVQQLLPVLCQAHG----LTPDQVVAIASNIGGKQALATVQRL 516

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           +     A  L P  V A  + G   +  + ++  L    +     P+  VA
Sbjct: 517 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 6e-08
 Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 4/106 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
               G      +        L QA        Q       +          + + +    
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHG----LTQVQVVAIASNIGGKQALETVQRLLPVLC 623

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
            A  L P  V A  +     +  + ++  L    +     P+  VA
Sbjct: 624 QAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 669

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 15/109 (13%), Positives = 27/109 (24%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                  G      +        L QA        Q+      +          + + + 
Sbjct: 667 VVAIASNGGGKQALETVQRLLPVLCQAHG----LTQEQVVAIASNNGGKQALETVQRLLP 722

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A  L P  V A  + G   +  + ++  L    +     P   VA
Sbjct: 723 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA 771

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 8e-08
 Identities = 14/109 (12%), Positives = 25/109 (22%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                  G      +        L QA         D      + G        + + + 
Sbjct: 531 VVAIASNGGGKQALETVQRLLPVLCQAHG----LTPDQVVAIASNGGGKQALETVQRLLP 586

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A  L    V A  +     +  + ++  L    +     P   VA
Sbjct: 587 VLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA 635

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 9/75 (12%), Positives = 20/75 (26%)

Query: 218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALK 277
                    +          + + +     A  L P  V A  +     +  + ++  L 
Sbjct: 188 TPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLP 247

Query: 278 AFEEVLLFDPNNKVA 292
              +     P+  VA
Sbjct: 248 VLCQAHGLPPDQVVA 262

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 11/111 (9%), Positives = 22/111 (19%), Gaps = 4/111 (3%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
                           +        L Q                 +          + + 
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHG----LTPAQVVAIASHDGGKQALETVQQL 482

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           +     A  L P  V A  +     +    ++  L    +     P+  VA
Sbjct: 483 LPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVA 533

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 12/86 (13%), Positives = 25/86 (29%)

Query: 207 LLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY 266
           LL  + +  G   D      +          + + +        L P  V A  +     
Sbjct: 414 LLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGK 473

Query: 267 EKKKDLKSALKAFEEVLLFDPNNKVA 292
           +  + ++  L    +     P+  VA
Sbjct: 474 QALETVQQLLPVLCQAHGLTPDQVVA 499

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 15/111 (13%), Positives = 26/111 (23%), Gaps = 5/111 (4%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
                           +        L QA         D      + G        + + 
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPDQVVAIASNGGGKQALETVQRL 381

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           +     A  L P  V A  + G     +  ++  L    +     P+  VA
Sbjct: 382 LPVLCQAHGLTPDQVVAIASNGGKQALET-VQRLLPVLCQAHGLTPDQVVA 431

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 15/109 (13%), Positives = 26/109 (23%), Gaps = 5/109 (4%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                  G      +        L QA         D      + G        + + + 
Sbjct: 362 VVAIASNGGGKQALETVQRLLPVLCQAHGL----TPDQVVAIASNGGKQ-ALETVQRLLP 416

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A  L P  V A  +     +  + ++  L    +     P   VA
Sbjct: 417 VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVA 465

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 9e-05
 Identities = 13/109 (11%), Positives = 24/109 (22%), Gaps = 4/109 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
                         +        L QA         D      + G        + + + 
Sbjct: 701 VVAIASNNGGKQALETVQRLLPVLCQAHGL----TPDQVVAIASNGGGKQALETVQRLLP 756

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               A  L P  V A  +     +  + ++  L    +         VA
Sbjct: 757 VLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVA 805

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
            SA E  E G  +   + YP A     +AI +    +  +A  Y    + Y++  + ++ 
Sbjct: 7   PSAQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQA 62

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           ++    A++L    V A   LG    + +    A+   +         ++ 
Sbjct: 63  LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 167 DLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQ--- 223
           +++++E  EQ        T YF+ G        Y     +L       + + Q       
Sbjct: 137 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 196

Query: 224 -VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEV 282
             +  L + +++       I     A++L        +  G+A+    D + A   F++V
Sbjct: 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 256

Query: 283 LLFDPNNKVARPRRDALKDRV 303
           L   PNNK A+ +    + R+
Sbjct: 257 LQLYPNNKAAKTQLAVCQQRI 277

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 55.3 bits (133), Expect = 5e-09
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
            SA E  E G  +   + YP A     +AI +    +  +A  Y    + Y++  + ++ 
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQA 57

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           ++    A++L    V A   LG    + +    A+   +         ++ 
Sbjct: 58  LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 55.3 bits (133), Expect = 6e-09
 Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 8/108 (7%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKW--DGDDQDLAQVYNALGVSYVREGKLDKG 241
           A    +    ++       A     QA   +  +   +  A++        VR+ K D+ 
Sbjct: 115 AAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEA 174

Query: 242 ISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
            +  +    +       P               + D  +A K   E  
Sbjct: 175 AASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 16/122 (13%), Positives = 38/122 (31%), Gaps = 9/122 (7%)

Query: 170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKW--DGDDQDLAQVYNA 227
             E     RS   +A  + + G ++   +  P A +Y+ +A   +  +G     A   + 
Sbjct: 62  EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121

Query: 228 LGVSYVREGKLDKGISQFETAVKLQ------PGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
            G        L K +  ++ A  +                      +++    A  + ++
Sbjct: 122 AGKLM-EPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180

Query: 282 VL 283
             
Sbjct: 181 EK 182

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP--- 253
            +    A KYL  +  KW  D    A  Y    V++    +L++    +    +      
Sbjct: 11  HEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR 70

Query: 254 ---GYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
                  A+   G   +  + +  A++  E+  
Sbjct: 71  SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 5/142 (3%)

Query: 167 DLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQ--- 223
           D + +E  +          E+F+   +      Y  A  + +   E  D    D  +   
Sbjct: 28  DYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87

Query: 224 --VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
                 L   Y +     K I      +K+    V A   LG A      L+ A +   +
Sbjct: 88  ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147

Query: 282 VLLFDPNNKVARPRRDALKDRV 303
               +PNN   R   +   +++
Sbjct: 148 AASLNPNNLDIRNSYELCVNKL 169

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 179 SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL 238
                A E         + K Y  A K+  QAIE    +    A  Y    ++Y+R    
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECY 56

Query: 239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA 298
              +     A++L   Y+  +     +       ++AL+ +E V+   P++K A+ +   
Sbjct: 57  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116

Query: 299 LKDRVP 304
               V 
Sbjct: 117 CNKIVK 122

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 6/131 (4%)

Query: 168 LSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQ---- 223
           +  KE  EQ        T YF+ G  M     Y     +L +        +   ++    
Sbjct: 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLL 317

Query: 224 -VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEV 282
             +  L + Y++  +  K +   + A+ L           G+A     + +SA   FE+V
Sbjct: 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 377

Query: 283 LLFDPNNKVAR 293
           L  +P NK AR
Sbjct: 378 LEVNPQNKAAR 388

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 50.4 bits (120), Expect = 3e-07
 Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 6/147 (4%)

Query: 167 DLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD------ 220
           D++ +E               F+   +    + Y  A  Y+                   
Sbjct: 169 DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV 228

Query: 221 LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE 280
               +  +    ++  + D+ I      +  +     A    G A  +   + SA   F 
Sbjct: 229 KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFR 288

Query: 281 EVLLFDPNNKVARPRRDALKDRVPLYK 307
           +   + P++K  R    AL ++     
Sbjct: 289 KAQKYAPDDKAIRRELRALAEQEKALY 315

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK-KKDLKSAL 276
                 VY+       R+ + ++       A++L     T W+      +  +KDL   +
Sbjct: 93  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 152

Query: 277 KAFEEVLLFDPNNKVA 292
                ++   P N   
Sbjct: 153 NYITAIIEEQPKNYQV 168

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 46.6 bits (110), Expect = 5e-06
 Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 6/135 (4%)

Query: 157 IRQVLVRRELDLSAKELQEQVRSGDASATE--YFELGAVMLRRKFYPAATKYLLQAIEKW 214
            R VL R E    A +L       +A+     +F    +   +K       Y+   IE+ 
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE- 161

Query: 215 DGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS 274
                   QV++   V         + +      +        AW +     ++ K   +
Sbjct: 162 ---QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN 218

Query: 275 ALKAFEEVLLFDPNN 289
            L+  +++L  D  N
Sbjct: 219 ELQYVDQLLKEDVRN 233

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 43.5 bits (102), Expect = 5e-05
 Identities = 13/131 (9%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV 224
           E++     ++EQ ++       +     ++   +      +++   + +    D      
Sbjct: 151 EMNYITAIIEEQPKNYQV----WHHRRVLVEWLRDPSQELEFIADILNQ----DAKNYHA 202

Query: 225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG------DAYEKKKDLKSALKA 278
           +             D  +   +  +K      + WN           Y  +  L+  ++ 
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262

Query: 279 FEEVLLFDPNN 289
             E++   P+N
Sbjct: 263 TLEMIKLVPHN 273

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 48.6 bits (115), Expect = 8e-07
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 2/107 (1%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
           S         ++L+      A K L +  ++   +D  L Q+  A         KL    
Sbjct: 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAY 186

Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
             F+         +   N     +  +   ++A    +E L  D  +
Sbjct: 187 YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 9/134 (6%)

Query: 170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKW--DGDDQDLAQVYNA 227
           A + Q++  + D +   Y E             A   L  AI+ +   G  +  A     
Sbjct: 63  AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122

Query: 228 LGVSYVRE-GKLDKGISQFETAVKL------QPGYVTAWNNLGDAYEKKKDLKSALKAFE 280
           LG     +     K I  +E A +              +    D          A   + 
Sbjct: 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182

Query: 281 EVLLFDPNNKVARP 294
           +++     N++++ 
Sbjct: 183 KLIKSSMGNRLSQW 196

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 10/132 (7%)

Query: 172 ELQEQVRSGDASATEYFELGAVMLRRKF-YPAATKYLLQAIEKWDGDDQ--DLAQVYNAL 228
           ++          A   FELG ++      Y  A      A E +  D       + +   
Sbjct: 105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC 164

Query: 229 GVSYVREGKLDKGISQFETAVK-------LQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
                 +G+  +    +   +K        Q      +   G       D  +A +  +E
Sbjct: 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224

Query: 282 VLLFDPNNKVAR 293
               DPN   +R
Sbjct: 225 GQSEDPNFADSR 236

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 11/78 (14%), Positives = 28/78 (35%)

Query: 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
            +     G S  ++G   + +  ++  +  QP     ++N   A  K  +   A++  ++
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63

Query: 282 VLLFDPNNKVARPRRDAL 299
            L +    +    R    
Sbjct: 64  GLRYTSTAEHVAIRSKLQ 81

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 12/108 (11%), Positives = 32/108 (29%), Gaps = 10/108 (9%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
           +   +  E G  + ++  Y  A     Q I             Y+   ++ ++ G+  + 
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITA----QPQNPVGYSNKAMALIKLGEYTQA 57

Query: 242 ISQFETAVKLQPGYVTAWNN------LGDAYEKKKDLKSALKAFEEVL 283
           I   +  ++                 L  A      ++  +   +E+ 
Sbjct: 58  IQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 12/106 (11%)

Query: 190 LGAVMLRRKFYPAATKYLLQAIEKWD---GDDQ-DLAQVYNALGVSYVREGKLDKGISQF 245
           L  +  +R  Y  A     +A+E  +   G D  D+A+  N L +    +GK ++    +
Sbjct: 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176

Query: 246 ETAVKLQ--------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           + A+++         P      NNL   Y K+   K A   ++E+L
Sbjct: 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAI---EKWDGDD-QDLAQVYNALGVSYVREGKLD 239
           AT    L  V   +  Y  A   L  A+   EK  G D   +A   N L V Y + GK  
Sbjct: 69  ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 128

Query: 240 KGISQFETAVKLQ--------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           +     + A++++        P      NNL    + +   +     ++  L
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 12/112 (10%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIE----KWDGDDQDLAQVYNALGVSYVREGKLD 239
                 L      +  Y  A     QA+E        D  D+A + N L + Y  + K  
Sbjct: 27  LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86

Query: 240 KGISQFETAVKLQ--------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
              +    A+ ++        P      NNL   Y K+   K A    +  L
Sbjct: 87  DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 13/107 (12%)

Query: 190 LGAVMLRRKFYPAATKYLLQAIE----KWDGDDQDLAQVYNALGVSYVREGKLDKGISQF 245
           L  +   +  Y     Y  +A+E    K   DD ++A+  N L   Y+++GK  +  + +
Sbjct: 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218

Query: 246 ETAVKLQ---------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           +  +                  W +  +  E K   K      E   
Sbjct: 219 KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--------PGYVTAWNNLGDAYEK 268
           +     +  + L + Y  +G+ +  +   + A++          P   T  N L   Y  
Sbjct: 22  EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD 81

Query: 269 KKDLKSALKAFEEVL 283
           +   K A     + L
Sbjct: 82  QNKYKDAANLLNDAL 96

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 7/134 (5%)

Query: 169 SAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV---- 224
           +  +  + V +      E F           Y  A   L   I +    + +  ++    
Sbjct: 3   AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN 62

Query: 225 ---YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
              Y  +   Y+  G L +        +K +     A      A      L  A +  + 
Sbjct: 63  IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKL 122

Query: 282 VLLFDPNNKVARPR 295
           +L   P       R
Sbjct: 123 LLRNHPAAASVVAR 136

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 13/107 (12%)

Query: 190 LGAVMLRRKFYPAATKYLLQAIE----KWDGDDQDLAQVYNALGVSYVREGKLDKGISQF 245
           L  +   +        Y  +A+E    +   DD ++A+  N L   Y+++GK     + +
Sbjct: 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192

Query: 246 ETAVKLQ---------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           +  +                  W +  +  E K   + +    E   
Sbjct: 193 KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 12/112 (10%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAI---EKWDGDD-QDLAQVYNALGVSYVREGKLD 239
           AT    L  V   +  Y  A   L  A+   EK  G D   +A   N L V Y + GK  
Sbjct: 43  ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102

Query: 240 KGISQFETAVKLQ--------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           +     + A++++        P      NNL    + +   +     +   L
Sbjct: 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWD---GDD-QDLAQVYNALGVSYVREGKLD 239
           A     L  +  +R  Y  A     +A+E  +   G    D+A+  N L +    +GK +
Sbjct: 85  AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144

Query: 240 KGISQFETAVKLQ--------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           +    +  A+++         P      NNL   Y K+   + A   ++E+L
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 200 YPAATKYLLQAI---EKWDGDDQ-DLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--- 252
             +A     QA+   EK  G D  D+A + N L + Y  + K  +       A+ ++   
Sbjct: 17  RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT 76

Query: 253 -----PGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
                P      NNL   Y K+   K A    +  L
Sbjct: 77  LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 25/119 (21%)

Query: 196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK----------LDKGISQF 245
           R   +    +      +     +   A      G   +   +          + + I++F
Sbjct: 14  RILLFEQIRQDAENTYKS----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKF 69

Query: 246 ETAVKLQPGYVTAWNNLGDAY-----------EKKKDLKSALKAFEEVLLFDPNNKVAR 293
           E A+ + P    A   +G+AY           E K +   A + F++ +   P+N    
Sbjct: 70  EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 22/111 (19%)

Query: 180 GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239
            D        LGA   + K +  A KY  +A +  +            LGV Y  +G+  
Sbjct: 4   QDPKE--LVGLGAKSYKEKDFTQAKKYFEKACDLKENS----GC--FNLGVLY-YQGQ-- 52

Query: 240 KGISQ-FETAVKL-----QPGYVTAWNNLGDAYEK----KKDLKSALKAFE 280
            G+ +  + A           Y    + LG+ Y       ++   AL+ + 
Sbjct: 53  -GVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYS 102

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 37/157 (23%)

Query: 139 LSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRR- 197
           L  ++L      V          +    +++ ++L+++  SG+A A    ELG     + 
Sbjct: 5   LLAVMLTGLFALVS---------LPALGNVNLEQLKQKAESGEAKA--QLELG-YRYFQG 52

Query: 198 ----KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQ-FETAVKL- 251
               K    A  +  +A E      Q        LG+ Y   G+   G+ Q +  AV   
Sbjct: 53  NETTKDLTQAMDWFRRAAE------QGYTPAEYVLGLRY-MNGE---GVPQDYAQAVIWY 102

Query: 252 ----QPGYVTAWNNLGDAYEK----KKDLKSALKAFE 280
                 G   A  NLG  Y +    K D   ++K F 
Sbjct: 103 KKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFR 139

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKW-DGDDQDLAQVYNALGVSYVREGKLDKGI 242
           A   + +    L+   Y  A++  L  +E + +G     A  +  LG SY          
Sbjct: 2   ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYW--LGESYYATRNFQLAE 59

Query: 243 SQFETAVKLQPGYVTAWNNL---GDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL 299
           +QF   V   P +  A   L   G +   +     A +  ++V    P +  AR  ++ L
Sbjct: 60  AQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119

Query: 300 K 300
           +
Sbjct: 120 Q 120

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 9/106 (8%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL--AQVYNALGVSYVREGKLDKGISQ 244
            + + A +L++  Y      L + + +            + NA+   Y   G L KGI  
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177

Query: 245 FETAVKL-------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
           FE  +K        +   V    N   A       + +L    + +
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.92
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.91
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.9
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.9
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.88
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.87
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.85
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.85
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.85
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.84
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.84
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.84
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.83
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.83
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.82
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.82
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.82
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.81
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.81
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.81
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.8
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.8
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.8
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.8
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.79
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.79
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.79
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.78
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.78
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.77
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.77
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.77
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.77
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.77
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.77
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.77
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.77
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.77
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.77
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.76
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.76
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.76
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.76
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.76
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.75
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.75
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.75
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.75
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.75
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.75
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.74
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.74
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.74
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.74
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.74
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.73
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.73
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.73
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.73
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.72
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.72
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.72
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.71
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.71
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.71
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.71
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.71
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.7
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.7
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.7
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.7
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.7
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.7
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.69
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.69
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.69
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.67
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.67
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.67
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.66
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.66
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.66
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.66
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.66
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.65
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.65
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.65
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.64
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.64
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.64
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.64
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.63
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.63
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.63
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.63
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.63
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.62
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.62
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.62
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.62
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.62
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.62
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.62
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.62
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.61
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.61
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.61
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.61
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.61
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.61
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.61
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.6
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.6
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.6
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.6
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.59
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.59
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.59
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.59
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.59
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.58
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.58
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.58
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.58
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.58
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.58
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.56
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.56
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.56
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.56
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.56
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.55
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.55
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.54
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.54
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.54
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.53
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.53
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.53
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.52
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.52
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.51
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.51
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.51
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.49
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.46
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.46
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.43
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.43
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.43
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.43
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.43
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.42
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.41
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.41
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.4
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.4
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.4
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.4
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.39
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.38
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.36
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.35
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.35
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.32
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.31
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.31
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.31
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.29
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.25
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.23
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.17
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.17
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.15
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.09
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.07
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.05
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.05
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.02
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.98
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.97
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.96
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.95
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.94
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.92
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.92
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.91
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.91
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.87
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.84
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.74
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.65
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.62
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.5
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.49
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.47
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.46
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.27
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.08
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.0
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.97
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.97
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.91
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.88
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.72
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.71
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.68
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.65
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.22
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.95
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.68
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.61
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.55
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.44
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.38
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.29
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.09
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.84
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.63
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.39
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.37
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.33
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.25
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.23
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.67
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.06
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.66
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.76
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	92.7
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.52
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.19
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	91.73
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.34
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	88.99
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	88.42
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	88.4
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	87.48
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.65
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	84.84
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	83.78
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	82.44
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	81.75

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.92  E-value=3.2e-23  Score=173.37  Aligned_cols=179  Identities=14%  Similarity=0.051  Sum_probs=156.3

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++.+.|...++.+...+|....       ++..+|..+.     ..|++++|+..++++++.+|+++.++.++|.++.
T Consensus        17 ~~g~~~~A~~~~~~al~~~p~~~~-------a~~~lg~~~~-----~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~   84 (217)
T 2pl2_A           17 ALGRYDAALTLFERALKENPQDPE-------ALYWLARTQL-----KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV   84 (217)
T ss_dssp             HTTCHHHHHHHHHHHHTTSSSCHH-------HHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            456777788889877777777653       3444444454     8999999999999999999999999999999999


Q ss_pred             Hc-----------CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 021175          196 RR-----------KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGD  264 (316)
Q Consensus       196 ~~-----------g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  264 (316)
                      ..           |++++|++.|+++++    .+|+++.++.++|.++...|++++|++.|+++++++ +++.+++++|.
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~  159 (217)
T 2pl2_A           85 ALYRQAEDRERGKGYLEQALSVLKDAER----VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAE  159 (217)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred             HhhhhhhhhcccccCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence            99           999999999999999    699999999999999999999999999999999999 99999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCCC
Q 021175          265 AYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVPV  311 (316)
Q Consensus       265 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~~  311 (316)
                      ++..+|++++|+..|+++++++|+++.++..++.++...|++++|..
T Consensus       160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~  206 (217)
T 2pl2_A          160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR  206 (217)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence            99999999999999999999999999999999999999999988754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.91  E-value=5.7e-23  Score=199.88  Aligned_cols=156  Identities=13%  Similarity=0.159  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHH
Q 021175          146 LGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVY  225 (316)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~  225 (316)
                      .++..+|..+.     .+|++++|++.|+++++.+|+++.+++++|.++..+|++++|+++|+++++    ++|+++.++
T Consensus        10 ~al~nLG~~~~-----~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----l~P~~~~a~   80 (723)
T 4gyw_A           10 DSLNNLANIKR-----EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTFADAY   80 (723)
T ss_dssp             HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHH
T ss_pred             HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHH
Confidence            45666666666     999999999999999999999999999999999999999999999999999    699999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          226 NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       226 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      +++|.++..+|++++|++.|+++++++|+++.+++++|.+|..+|++++|+++|+++++++|+++.++.+++.++..+|+
T Consensus        81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A           81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 021175          306 YKGVP  310 (316)
Q Consensus       306 ~~~A~  310 (316)
                      +++|.
T Consensus       161 ~~~A~  165 (723)
T 4gyw_A          161 WTDYD  165 (723)
T ss_dssp             CTTHH
T ss_pred             HHHHH
Confidence            98763

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.90  E-value=1.1e-23  Score=165.87  Aligned_cols=140  Identities=17%  Similarity=0.178  Sum_probs=134.6

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      .+|++++|++.+++++..+|+.+..++.+|.+|...|++++|+++|+++++    .+|+++.+++++|.+|...|++++|
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN----VQERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCchHHH
Confidence            789999999999999999999999999999999999999999999999999    6999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKA-FEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      +..|+++++++|+++.+++++|.+|...|++++|... ++++++++|+++.++...+.+....|+
T Consensus        85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999887765 599999999999999999999998886

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.90  E-value=4.1e-22  Score=161.42  Aligned_cols=154  Identities=16%  Similarity=0.224  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN  226 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~  226 (316)
                      .+..+|..+.     ..|++++|++.|+++++.+|+++.++..+|.++...|++++|++.+++++.    ..|+++.++.
T Consensus         7 iy~~lG~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~   77 (184)
T 3vtx_A            7 IYMDIGDKKR-----TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV----LDTTSAEAYY   77 (184)
T ss_dssp             HHHHHHHHHH-----HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCCHHHHH
T ss_pred             HHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCchhHHHHH
Confidence            4455555555     899999999999999999999999999999999999999999999999999    6999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      .+|.++...+++++|++.++++++++|++..++..+|.+|..+|++++|++.|+++++++|+++.++.+++.++...|++
T Consensus        78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q 021175          307 KGV  309 (316)
Q Consensus       307 ~~A  309 (316)
                      ++|
T Consensus       158 ~~A  160 (184)
T 3vtx_A          158 DEA  160 (184)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.89  E-value=4.1e-22  Score=166.60  Aligned_cols=144  Identities=14%  Similarity=0.166  Sum_probs=140.4

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-----
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE-----  235 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~-----  235 (316)
                      ...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++    .+|+++.++.++|.++...     
T Consensus        16 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~~~~~~   91 (217)
T 2pl2_A           16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA----RTPRYLGGYMVLSEAYVALYRQAE   91 (217)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHTCS
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHhhhhhh
Confidence            3899999999999999999999999999999999999999999999999999    6999999999999999999     


Q ss_pred             ------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          236 ------GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       236 ------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                            |++++|++.|+++++++|+++.+++++|.++..+|++++|+..|+++++++ +++.++.+++.++...|++++|
T Consensus        92 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A  170 (217)
T 2pl2_A           92 DRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEA  170 (217)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHH
Confidence                  999999999999999999999999999999999999999999999999999 9999999999999999998765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.88  E-value=3.8e-22  Score=152.40  Aligned_cols=122  Identities=17%  Similarity=0.283  Sum_probs=115.6

Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 021175          175 EQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG  254 (316)
Q Consensus       175 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  254 (316)
                      +...++|+.+.++.++|..+++.|+|++|+++|+++++    .+|.++.+++++|.++..+|++++|++.|+++++++|+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence            34458899999999999999999999999999999999    69999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 021175          255 YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALK  300 (316)
Q Consensus       255 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~  300 (316)
                      ++.+++++|.++..+|++++|++.|+++++++|++.+++..++.+.
T Consensus        80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.87  E-value=2.7e-20  Score=150.60  Aligned_cols=160  Identities=24%  Similarity=0.286  Sum_probs=145.9

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 021175          115 ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVM  194 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  194 (316)
                      ...|+.+.|...|+.+...+|...       .++..+|..+.     ..|++++|+..+++++...|+.+.++..+|.++
T Consensus        16 ~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A           16 RTKGDFDGAIRAYKKVLKADPNNV-------ETLLKLGKTYM-----DIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHH-----HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            456788888889997777777665       34444555555     899999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 021175          195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS  274 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  274 (316)
                      ...+++++|.+.++++++    ..|.+..++..+|.++..+|++++|++.|+++++++|+++.+++++|.+|..+|++++
T Consensus        84 ~~~~~~~~a~~~~~~a~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIA----LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcCCHHHHHHHHHHHHH----hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            999999999999999999    6999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCh
Q 021175          275 ALKAFEEVLLFDPNNK  290 (316)
Q Consensus       275 A~~~~~~al~~~p~~~  290 (316)
                      |+.+|+++++++|+++
T Consensus       160 A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          160 AVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHhCCccCH
Confidence            9999999999999764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.86  E-value=7.6e-21  Score=172.17  Aligned_cols=173  Identities=6%  Similarity=-0.033  Sum_probs=155.3

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRE-LDLSAKELQEQVRSGDASATEYFELGAVM  194 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~  194 (316)
                      ..++.+.|...++.+..+.+....       ++..+|..+.     ..|+ +++|+..++++++.+|++..+|+++|.++
T Consensus       109 ~~g~~~~Al~~~~~al~l~P~~~~-------a~~~~g~~l~-----~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A          109 RDERSERAFKLTRDAIELNAANYT-------VWHFRRVLLK-----SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HTCCCHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHH-----HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HCCChHHHHHHHHHHHHhCccCHH-------HHHHHHHHHH-----HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            456677888899877777777663       4444455554     7886 99999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHH
Q 021175          195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK-KKDLK  273 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~  273 (316)
                      ...|++++|+.+|+++++    ++|++..+|+++|.++..+|++++|+++|+++++++|++..+|+++|.++.. .|..+
T Consensus       177 ~~~g~~~eAl~~~~kal~----ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILN----QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHccCHHHHHHHHHHHHH----hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch
Confidence            999999999999999999    6999999999999999999999999999999999999999999999999999 56557


Q ss_pred             HH-----HHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          274 SA-----LKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       274 ~A-----~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      +|     +.+|+++++++|++..+|.+++.++...|
T Consensus       253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g  288 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG  288 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence            77     59999999999999999999999998877

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.85  E-value=5.8e-20  Score=153.96  Aligned_cols=172  Identities=16%  Similarity=0.135  Sum_probs=146.6

Q ss_pred             hccchHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFEL-GIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVM  194 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  194 (316)
                      ..++...|...|+.+....+ ...       ..+..+|..+.     ..|++++|++.++++++.+|+++.++..+|.++
T Consensus        19 ~~~~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A           19 NAKNYAVAFEKYSEYLKLTNNQDS-------VTAYNCGVCAD-----NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTTCCH-------HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHhccCCCCc-------HHHHHHHHHHH-----HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            55677778888886666654 322       12333444444     899999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhcCCCCccHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHH
Q 021175          195 LRRKFYPAATKYLLQAIEKWDGDDQDLA-------QVYNALGVSYVREGKLDKGISQFETAVKLQPG--YVTAWNNLGDA  265 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~  265 (316)
                      ...|++++|++.++++++    ..|+++       .++.++|.++...|++++|++.|+++++++|+  ++.+++++|.+
T Consensus        87 ~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIK----AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            999999999999999999    577766       67999999999999999999999999999999  89999999999


Q ss_pred             HHHcCCH---------------------------HHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175          266 YEKKKDL---------------------------KSALKAFEEVLLFDPNNKVARPRRDALKDRV  303 (316)
Q Consensus       266 ~~~~g~~---------------------------~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~  303 (316)
                      |...|+.                           ++|+.+|+++++++|+++.+...++.+...+
T Consensus       163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~  227 (228)
T 4i17_A          163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI  227 (228)
T ss_dssp             HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence            9999988                           8999999999999999999999998887653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.85  E-value=8.2e-21  Score=171.96  Aligned_cols=154  Identities=11%  Similarity=0.041  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhcCCCCccHHHHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKF-YPAATKYLLQAIEKWDGDDQDLAQVY  225 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~p~~~~~~  225 (316)
                      ++..++..+.     ..|++++|++.++++++.+|++..+|+++|.++...|+ +++|+++|+++++    .+|++..+|
T Consensus        99 a~~~lg~~~~-----~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~----l~P~~~~a~  169 (382)
T 2h6f_A           99 VYDYFRAVLQ-----RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE----EQPKNYQVW  169 (382)
T ss_dssp             HHHHHHHHHH-----HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCTTCHHHH
T ss_pred             HHHHHHHHHH-----HCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH----HCCCCHHHH
Confidence            3444444444     78999999999999999999999999999999999997 9999999999999    699999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC-C
Q 021175          226 NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV-P  304 (316)
Q Consensus       226 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~-~  304 (316)
                      +++|.++..+|++++|++.|+++++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|.+++.++..+ |
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999994 4


Q ss_pred             CCCCC
Q 021175          305 LYKGV  309 (316)
Q Consensus       305 ~~~~A  309 (316)
                      ..++|
T Consensus       250 ~~~eA  254 (382)
T 2h6f_A          250 YNDRA  254 (382)
T ss_dssp             SCSHH
T ss_pred             cchHH
Confidence            43544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.85  E-value=4.8e-20  Score=154.45  Aligned_cols=142  Identities=15%  Similarity=0.188  Sum_probs=136.0

Q ss_pred             HHhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          161 LVRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      ...|++++|++.|+++++.+| .+..+++++|.++...|++++|+++++++++    .+|++..++.++|.++..+|+++
T Consensus        18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~   93 (228)
T 4i17_A           18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK----KNYNLANAYIGKSAAYRDMKNNQ   93 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCSHHHHHHHHHHHHHHTTCHH
T ss_pred             HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH----hCcchHHHHHHHHHHHHHcccHH
Confidence            389999999999999999999 8999999999999999999999999999999    79999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHhhCCCC
Q 021175          240 KGISQFETAVKLQPGYV-------TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN--NKVARPRRDALKDRVPLY  306 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~l~~l~~~~~~~  306 (316)
                      +|++.++++++++|+++       .+++++|.++...|++++|+..|+++++++|+  +..++.+++.++...|+.
T Consensus        94 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A           94 EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999998       67999999999999999999999999999999  999999999998776654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=1.8e-19  Score=161.24  Aligned_cols=148  Identities=17%  Similarity=0.235  Sum_probs=117.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-------------------------
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-------------------------  216 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------------------  216 (316)
                      ..|++++|++.|+++++.+|+++.++.++|.++...|++++|+++++++++..+.                         
T Consensus       111 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~  190 (365)
T 4eqf_A          111 ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS  190 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CC
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh
Confidence            5555555555555555555555555555555555555555555555555542110                         


Q ss_pred             ---------------CCcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 021175          217 ---------------DDQD--LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF  279 (316)
Q Consensus       217 ---------------~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  279 (316)
                                     ..|.  ++.++.++|.++...|++++|++.|+++++.+|+++.++.++|.++...|++++|+.+|
T Consensus       191 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  270 (365)
T 4eqf_A          191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY  270 (365)
T ss_dssp             HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                           3455  78899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          280 EEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       280 ~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +++++++|++..++..++.++...|++++|
T Consensus       271 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          271 TRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999998765

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.84  E-value=2.2e-19  Score=162.13  Aligned_cols=144  Identities=16%  Similarity=0.198  Sum_probs=94.6

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++++|+..++++++.+|+++.++.++|.++...|++++|++.|+++++    .+|+++.++.++|.++...|++++|
T Consensus       215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A  290 (388)
T 1w3b_A          215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE----LQPHFPDAYCNLANALKEKGSVAEA  290 (388)
T ss_dssp             TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            556666666666666666666666666666666666666666666666666    4666666666666666666666666


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++.|+++++.+|+++.++.++|.++...|++++|+..++++++.+|++..++..++.++...|++++|
T Consensus       291 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  358 (388)
T 1w3b_A          291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA  358 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.84  E-value=2.5e-19  Score=161.81  Aligned_cols=177  Identities=19%  Similarity=0.274  Sum_probs=153.6

Q ss_pred             ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 021175          117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLR  196 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  196 (316)
                      .++.+.|...|+.+....+...       .++..++..+.     ..|++++|++.|+++++.+|+...++.++|.++..
T Consensus       148 ~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  215 (388)
T 1w3b_A          148 LGRLEEAKACYLKAIETQPNFA-------VAWSNLGCVFN-----AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE  215 (388)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHH-----TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHH-----HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            4556666666665544444433       23333444444     88999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 021175          197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL  276 (316)
Q Consensus       197 ~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  276 (316)
                      .|++++|+..++++++    .+|+++.++.++|.++...|++++|++.|+++++.+|+++.++.++|.++...|++++|+
T Consensus       216 ~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  291 (388)
T 1w3b_A          216 ARIFDRAVAAYLRALS----LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE  291 (388)
T ss_dssp             TTCTTHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             cCCHHHHHHHHHHHHh----hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999    589999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          277 KAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       277 ~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ..|+++++.+|++..++..++.++...|++++|
T Consensus       292 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  324 (388)
T 1w3b_A          292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999988654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=4.6e-19  Score=149.98  Aligned_cols=181  Identities=14%  Similarity=0.140  Sum_probs=132.2

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCC-------HHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDAS-------ATEYF  188 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~  188 (316)
                      ..++...|...++.+.... ...       .++..++..+.     ..|++++|++.++++++.+|+.       +.++.
T Consensus        17 ~~~~~~~A~~~~~~a~~~~-~~~-------~~~~~~~~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A           17 KARQFDEAIEHYNKAWELH-KDI-------TYLNNRAAAEY-----EKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-CCT-------HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhh-ccH-------HHHHHHHHHHH-----HcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            3455566666666444443 221       22333333343     6777888888888887777655       67777


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhcCC----------------------CCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175          189 ELGAVMLRRKFYPAATKYLLQAIEKWDG----------------------DDQDLAQVYNALGVSYVREGKLDKGISQFE  246 (316)
Q Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~----------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  246 (316)
                      .+|.++...|++++|+++++++++..+.                      .+|.++.++..+|.++...|++++|++.++
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  163 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT  163 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            8888888888888888888777774322                      467777888888888888888888888888


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       247 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++++.+|+++.++.++|.++...|++++|+.+++++++.+|+++.++..++.++...|++++|
T Consensus       164 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          164 EMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            888888888888888888888888888888888888888888888888888888888877554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.83  E-value=1.6e-20  Score=147.82  Aligned_cols=122  Identities=14%  Similarity=0.078  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Q 021175          165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQ  244 (316)
Q Consensus       165 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  244 (316)
                      ++-.+-..++++++.+|+++.+++++|.++...|++++|+.+|+++++    .+|+++.+|+++|.++..+|++++|++.
T Consensus        17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~Ai~~   92 (151)
T 3gyz_A           17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYNVDYIMGLAAIYQIKEQFQQAADL   92 (151)
T ss_dssp             HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHccHHHHHHH
Confidence            333444567778889999999999999999999999999999999999    6999999999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 021175          245 FETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK  290 (316)
Q Consensus       245 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  290 (316)
                      |+++++++|+++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus        93 ~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           93 YAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999999999999999999865

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.83  E-value=5.3e-20  Score=171.56  Aligned_cols=178  Identities=11%  Similarity=0.123  Sum_probs=160.1

Q ss_pred             hhccch-HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 021175          115 ANASEN-VQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAV  193 (316)
Q Consensus       115 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  193 (316)
                      ...++. +.|...|+.+....+...       .++..+|..+.     ..|++++|++.|+++++.+|+ ..++.++|.+
T Consensus       113 ~~~g~~~~~A~~~~~~al~~~p~~~-------~a~~~lg~~~~-----~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~  179 (474)
T 4abn_A          113 NVTPDYSPEAEVLLSKAVKLEPELV-------EAWNQLGEVYW-----KKGDVTSAHTCFSGALTHCKN-KVSLQNLSMV  179 (474)
T ss_dssp             TSSSSCCHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHH-----HHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHH-----HcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHH
Confidence            445677 888889987777766654       34445555555     899999999999999999999 7999999999


Q ss_pred             HHHc---------CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---
Q 021175          194 MLRR---------KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE--------GKLDKGISQFETAVKLQP---  253 (316)
Q Consensus       194 ~~~~---------g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p---  253 (316)
                      +...         |++++|+++|+++++    .+|+++.+++++|.+|...        |++++|++.|+++++++|   
T Consensus       180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  255 (474)
T 4abn_A          180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQ----MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS  255 (474)
T ss_dssp             HTTCCCSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHhccCChhhhhhhHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence            9999         999999999999999    6999999999999999999        999999999999999999   


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          254 GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       254 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +++.+++++|.+|..+|++++|+.+|+++++++|+++.++..++.++..+|++++|
T Consensus       256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA  311 (474)
T 4abn_A          256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL  311 (474)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888876544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.83  E-value=1e-19  Score=176.99  Aligned_cols=158  Identities=15%  Similarity=0.183  Sum_probs=145.0

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 021175          115 ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVM  194 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  194 (316)
                      ...++.++|...|+.+..+.+...       .++..+|..+.     ..|++++|++.|+++++.+|+++.+++++|.++
T Consensus        20 ~~~G~~~eAi~~~~kAl~l~P~~~-------~a~~nLg~~l~-----~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l   87 (723)
T 4gyw_A           20 REQGNIEEAVRLYRKALEVFPEFA-------AAHSNLASVLQ-----QQGKLQEALMHYKEAIRISPTFADAYSNMGNTL   87 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSCCH-------HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            466788888889998777777765       34555566665     899999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 021175          195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS  274 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  274 (316)
                      ..+|++++|+++|+++++    ++|+++.+++++|.+|..+|++++|++.|+++++++|+++.++.++|.++..+|++++
T Consensus        88 ~~~g~~~~A~~~~~kAl~----l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           88 KEMQDVQGALQCYTRAIQ----INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            999999999999999999    6999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCC
Q 021175          275 ALKAFEEVLLFDPN  288 (316)
Q Consensus       275 A~~~~~~al~~~p~  288 (316)
                      |.+.+++++++.|+
T Consensus       164 A~~~~~kal~l~~~  177 (723)
T 4gyw_A          164 YDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChh
Confidence            99999999987654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.82  E-value=3.5e-19  Score=149.63  Aligned_cols=144  Identities=18%  Similarity=0.216  Sum_probs=126.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++++|+..++++++.+|+...++..+|.++...|++++|+++++++++    ..|.+..++..+|.++...|++++|
T Consensus        69 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A  144 (243)
T 2q7f_A           69 SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR----AGMENGDLFYMLGTVLVKLEQPKLA  144 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTCCSHHHHHHHHHHHHHTSCHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhccHHHH
Confidence            788888888888888888888888888888888888899999988888888    5777888888888888888899999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++.++++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..++.++...|++++|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  212 (243)
T 2q7f_A          145 LPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA  212 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence            99998888888888888888888888888888888888888888888888888888888888888765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.82  E-value=2.1e-18  Score=146.04  Aligned_cols=180  Identities=15%  Similarity=0.125  Sum_probs=156.7

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++.+.|...++.+....+...       .++..++..+.     ..|++++|++.++++++.+|++..++..+|.++.
T Consensus        49 ~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           49 QRGNTEQAKVPLRKALEIDPSSA-------DAHAALAVVFQ-----TEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HTTCTGGGHHHHHHHHHHCTTCH-------HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCChH-------HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            44566666668876655554443       23334444444     8999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA  275 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  275 (316)
                      ..|++++|+++++++++  ....|.+..++..+|.++...|++++|++.++++++.+|++..++..+|.++...|++++|
T Consensus       117 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999998  1137889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          276 LKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       276 ~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ...++++++.+|++...+..++.++...|++++|
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A  228 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA  228 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence            9999999999999999999999999999988755

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.82  E-value=3.1e-20  Score=145.78  Aligned_cols=132  Identities=9%  Similarity=0.017  Sum_probs=121.3

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175          170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAV  249 (316)
Q Consensus       170 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  249 (316)
                      ...++++++.+|++..+++++|.++...|++++|+..|+++++    .+|+++.+++++|.++...|++++|++.|++++
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   82 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV----LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA   82 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999    699999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          250 KLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       250 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      +++|+++.+++++|.+|..+|++++|+.+|+++++++|+++........+...+..
T Consensus        83 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  138 (148)
T 2vgx_A           83 VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA  138 (148)
T ss_dssp             HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988776655555544443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.82  E-value=3.7e-19  Score=147.53  Aligned_cols=136  Identities=14%  Similarity=0.190  Sum_probs=118.1

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFE----------------LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQ  223 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~  223 (316)
                      .+..|++++|+..|+++++.+|+++.+++.                +|.++...|++++|+..|+++++    .+|+++.
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~   89 (208)
T 3urz_A           14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ----KAPNNVD   89 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCHH
Confidence            348999999999999999999999999999                99999999999999999999999    6999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----------------------------------
Q 021175          224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK-----------------------------------  268 (316)
Q Consensus       224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-----------------------------------  268 (316)
                      +++++|.++...|++++|++.|+++++++|+++.+++++|.+|..                                   
T Consensus        90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~  169 (208)
T 3urz_A           90 CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF  169 (208)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            999999999999999999999999999999998888888877643                                   


Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 021175          269 KKDLKSALKAFEEVLLFDPNNKVARPRRDALK  300 (316)
Q Consensus       269 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~  300 (316)
                      .|++++|+.+|+++++++|+. ++...+..+.
T Consensus       170 ~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~  200 (208)
T 3urz_A          170 TTRYEKARNSLQKVILRFPST-EAQKTLDKIL  200 (208)
T ss_dssp             HHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence            356789999999999999974 3444455543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.82  E-value=4.7e-18  Score=140.71  Aligned_cols=180  Identities=12%  Similarity=0.023  Sum_probs=156.3

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++.+.|...++.+....+...       .++..++..+.     ..|++++|++.++++++.+|++..++..+|.++.
T Consensus        20 ~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A           20 RGQDYRQATASIEDALKSDPKNE-------LAWLVRAEIYQ-----YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC   87 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCccch-------HHHHHHHHHHH-----HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            45667777778876655555443       23333444444     8999999999999999999999999999999999


Q ss_pred             Hc-CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 021175          196 RR-KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS  274 (316)
Q Consensus       196 ~~-g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  274 (316)
                      .. |++++|+++++++++ .+ ..|.+..++.++|.++...|++++|++.++++++.+|++..++..+|.++...|++++
T Consensus        88 ~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALA-DP-TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHT-ST-TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HhcCcHHHHHHHHHHHHc-Cc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence            99 999999999999998 22 3788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCC-CChhHHHHHHHHHhhCCCCCCC
Q 021175          275 ALKAFEEVLLFDP-NNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       275 A~~~~~~al~~~p-~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |...++++++.+| ++...+..+..++...|+.+++
T Consensus       166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  201 (225)
T 2vq2_A          166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA  201 (225)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence            9999999999999 9999999999998888887543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.81  E-value=6.7e-19  Score=141.16  Aligned_cols=145  Identities=16%  Similarity=0.183  Sum_probs=137.4

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|+..++++++.+|+++.++..+|.++...|++++|+++++++++    ..|.+..++..+|.++...|++++
T Consensus        19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~   94 (186)
T 3as5_A           19 AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA----DAPDNVKVATVLGLTYVQVQKYDL   94 (186)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcCHHH
Confidence            3889999999999999999999999999999999999999999999999999    588889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |++.++++++.+|++..++..+|.++...|++++|+.+++++++.+|+++.++..++.++...|++++|
T Consensus        95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.81  E-value=1.5e-18  Score=152.14  Aligned_cols=147  Identities=14%  Similarity=0.173  Sum_probs=120.8

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-----CccHHHHHHHHHHHHHHc
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD-----DQDLAQVYNALGVSYVRE  235 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~p~~~~~~~~lg~~~~~~  235 (316)
                      ...|++++|++.++++++.+|+++.++..+|.++...|++++|+++++++++..+..     .|..+.++.++|.++...
T Consensus       170 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  249 (330)
T 3hym_B          170 GLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL  249 (330)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence            378888888888888888888888888888888888888888888888888864321     155677888888888888


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH-hhCCCCC
Q 021175          236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALK-DRVPLYK  307 (316)
Q Consensus       236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~-~~~~~~~  307 (316)
                      |++++|++.++++++.+|++..++.++|.++...|++++|..+|+++++++|+++.++..++.++ ...|+.+
T Consensus       250 g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence            88888888888888888888888888888888888888888888888888888888888888877 4555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=3.5e-18  Score=152.55  Aligned_cols=144  Identities=16%  Similarity=0.182  Sum_probs=139.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          162 VRRELDLSAKELQEQVRSGDA--SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      ..|++++|+..++++++.+|+  .+.++..+|.++...|++++|+++++++++    .+|+++.++.++|.++...|+++
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~l~~~~~~~g~~~  268 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS----VRPNDYLLWNKLGATLANGNQSE  268 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHcCCHH
Confidence            688999999999999999999  899999999999999999999999999999    58999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------hhHHHHHHHHHhhCCCCCC
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN-----------KVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~a~~~l~~l~~~~~~~~~  308 (316)
                      +|++.|+++++++|++..+++++|.+|...|++++|+.+|+++++++|++           ..++..++.++..+|++++
T Consensus       269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence            99999999999999999999999999999999999999999999999988           8999999999999999987


Q ss_pred             C
Q 021175          309 V  309 (316)
Q Consensus       309 A  309 (316)
                      |
T Consensus       349 A  349 (368)
T 1fch_A          349 Y  349 (368)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.81  E-value=2.8e-18  Score=144.13  Aligned_cols=173  Identities=21%  Similarity=0.364  Sum_probs=148.8

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++.+.|...++.+....+...       .++..++..+.     ..|++++|++.++++++.+|+++.++..+|.++.
T Consensus        69 ~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~la~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  136 (243)
T 2q7f_A           69 SVNELERALAFYDKALELDSSAA-------TAYYGAGNVYV-----VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV  136 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCcch-------HHHHHHHHHHH-----HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45667777778876655555443       23333344444     8999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA  275 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  275 (316)
                      ..|++++|+++++++++    ..|.+..++..+|.++...|++++|++.++++++.+|++..++..+|.+|...|++++|
T Consensus       137 ~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  212 (243)
T 2q7f_A          137 KLEQPKLALPYLQRAVE----LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA  212 (243)
T ss_dssp             HTSCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred             HhccHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence            99999999999999999    58889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          276 LKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       276 ~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      ..+++++++++|+++.++..++.+....+
T Consensus       213 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          213 LEMLDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred             HHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence            99999999999999999999887766544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=1.6e-19  Score=175.55  Aligned_cols=141  Identities=16%  Similarity=0.056  Sum_probs=133.2

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|++.++++++.+|+++.+++++|.++...|++++|++.|+++++    .+|+++.+++++|.++..+|++++
T Consensus       444 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~~~~~~lg~~~~~~g~~~~  519 (681)
T 2pzi_A          444 LDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD----TFPGELAPKLALAATAELAGNTDE  519 (681)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred             HhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcCChHH
Confidence            3899999999999999999999999999999999999999999999999999    699999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                       ++.|+++++++|++..+++++|.++..+|++++|++.|+++++++|++..++.+++.++...++.
T Consensus       520 -~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~  584 (681)
T 2pzi_A          520 -HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRST  584 (681)
T ss_dssp             -TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred             -HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence             99999999999999999999999999999999999999999999999999999999998666553

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.81  E-value=2.7e-18  Score=145.22  Aligned_cols=176  Identities=14%  Similarity=0.132  Sum_probs=146.3

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------------
Q 021175          115 ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVR----------------  178 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----------------  178 (316)
                      ...++.+.|...++.+....+...........++..++..+.     ..|++++|+..++++++                
T Consensus        49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  123 (258)
T 3uq3_A           49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-----KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK  123 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-----HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHH
Confidence            355677777778876665555442111111234444455544     77778888888877777                


Q ss_pred             ----------cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 021175          179 ----------SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETA  248 (316)
Q Consensus       179 ----------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  248 (316)
                                .+|+.+.++..+|.++...|++++|+++++++++    ..|.++.++.++|.++...|++++|++.++++
T Consensus       124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  199 (258)
T 3uq3_A          124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPEDARGYSNRAAALAKLMSFPEAIADCNKA  199 (258)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                      7788889999999999999999999999999999    58899999999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCChhHHHHHHHH
Q 021175          249 VKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD------PNNKVARPRRDAL  299 (316)
Q Consensus       249 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~l~~l  299 (316)
                      ++.+|+++.++..+|.++...|++++|..+++++++++      |++..++..+..+
T Consensus       200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99999999999999999999999999999999999999      9888888877654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=4.2e-18  Score=152.06  Aligned_cols=182  Identities=16%  Similarity=0.157  Sum_probs=142.0

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++...|...++.+....+...       .++..+|..+.     ..|++++|+..++++++.+|+++.++..+|.++.
T Consensus        76 ~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           76 QEGDLPNAVLLFEAAVQQDPKHM-------EAWQYLGTTQA-----ENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHSCTTCH-------HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHH-----HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34455566666665554444433       12233333333     6777777777777777777777777777777777


Q ss_pred             HcCChHHHHHHHHHHHHhcCC---------------------------------------------CCcc--HHHHHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDG---------------------------------------------DDQD--LAQVYNAL  228 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~---------------------------------------------~~p~--~~~~~~~l  228 (316)
                      ..|++++|++.++++++..+.                                             ..|.  ++.++.++
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l  223 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  223 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence            777777777777766663221                                             2444  68899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCC
Q 021175          229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       229 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~  308 (316)
                      |.++...|++++|++.++++++.+|+++.+++++|.++...|++++|+..|+++++++|++..++..++.++...|++++
T Consensus       224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  303 (368)
T 1fch_A          224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE  303 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             C
Q 021175          309 V  309 (316)
Q Consensus       309 A  309 (316)
                      |
T Consensus       304 A  304 (368)
T 1fch_A          304 A  304 (368)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.81  E-value=6.2e-18  Score=149.67  Aligned_cols=178  Identities=8%  Similarity=0.051  Sum_probs=155.8

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++...|...++.+....+...       .++...+..+.     ..|++++|+..++++++.+|++..++..+|.++.
T Consensus        15 ~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~~a~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A           15 AAGQLADALSQFHAAVDGDPDNY-------IAYYRRATVFL-----AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcccH-------HHHHHHHHHHH-----HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            45677777778886666655543       23344444444     8999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCc---cHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQ---DLAQVYNAL------------GVSYVREGKLDKGISQFETAVKLQPGYVTAWN  260 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p---~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  260 (316)
                      ..|++++|++.++++++    ..|   ++..++..+            |.++...|++++|++.++++++.+|+++.++.
T Consensus        83 ~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  158 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLK----SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE  158 (359)
T ss_dssp             HHTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HcCChHHHHHHHHHHHh----cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence            99999999999999999    688   888888877            78999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          261 NLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       261 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      .+|.++...|++++|+..++++++.+|+++.++..++.++...|++++|
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  207 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS  207 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999999999999999988654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.80  E-value=3.3e-19  Score=166.22  Aligned_cols=153  Identities=18%  Similarity=0.183  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHH
Q 021175          147 GLLGVGTFFVIRQVLVRREL-DLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVY  225 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~  225 (316)
                      .+...|..+.     ..|++ ++|++.|+++++.+|+++.+++++|.++...|++++|+++|+++++    .+|+ ..++
T Consensus       104 ~~~~lg~~~~-----~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~-~~~~  173 (474)
T 4abn_A          104 ALMLKGKALN-----VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT----HCKN-KVSL  173 (474)
T ss_dssp             HHHHHHHHHT-----SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TCCC-HHHH
T ss_pred             HHHHHHHHHH-----hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCC-HHHH
Confidence            3444444444     89999 9999999999999999999999999999999999999999999999    6888 6999


Q ss_pred             HHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCC-
Q 021175          226 NALGVSYVRE---------GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK--------KDLKSALKAFEEVLLFDP-  287 (316)
Q Consensus       226 ~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p-  287 (316)
                      .++|.++...         |++++|++.|+++++++|+++.+++++|.+|...        |++++|+.+|+++++++| 
T Consensus       174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  253 (474)
T 4abn_A          174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK  253 (474)
T ss_dssp             HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC
Confidence            9999999999         9999999999999999999999999999999999        999999999999999999 


Q ss_pred             --CChhHHHHHHHHHhhCCCCCCC
Q 021175          288 --NNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       288 --~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                        +++.++.+++.++...|++++|
T Consensus       254 ~~~~~~~~~~lg~~~~~~g~~~~A  277 (474)
T 4abn_A          254 ASSNPDLHLNRATLHKYEESYGEA  277 (474)
T ss_dssp             GGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccCHHHHHHHHHHHHHcCCHHHH
Confidence              9999999999999999998765

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.80  E-value=1.2e-18  Score=155.85  Aligned_cols=184  Identities=11%  Similarity=0.055  Sum_probs=148.4

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCC--CHHHHHH
Q 021175          115 ANASENVQMDAVYEIGELFELGIQLSYLLL---LLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDA--SATEYFE  189 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~  189 (316)
                      ...++.+.|...++.+....+.........   ......++..     +...|++++|++.++++++.+|+  ++.++.+
T Consensus       144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  218 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS-----PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG  218 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHHCC------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence            345566666666665544444332111110   0111112223     33789999999999999999999  8999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 021175          190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK  269 (316)
Q Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  269 (316)
                      +|.++...|++++|+++|+++++    ..|+++.++.++|.++...|++++|++.|+++++++|+++.+++++|.+|..+
T Consensus       219 l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  294 (365)
T 4eqf_A          219 LGVLFHLSGEFNRAIDAFNAALT----VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL  294 (365)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence            99999999999999999999999    58999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCC------------ChhHHHHHHHHHhhCCCCC
Q 021175          270 KDLKSALKAFEEVLLFDPN------------NKVARPRRDALKDRVPLYK  307 (316)
Q Consensus       270 g~~~~A~~~~~~al~~~p~------------~~~a~~~l~~l~~~~~~~~  307 (316)
                      |++++|+.+|+++++++|+            +..++..++.++...|+.+
T Consensus       295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  344 (365)
T 4eqf_A          295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE  344 (365)
T ss_dssp             TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred             CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence            9999999999999999987            3678899999988888765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.80  E-value=3e-18  Score=150.29  Aligned_cols=178  Identities=14%  Similarity=0.076  Sum_probs=157.2

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++...|...++.+....+......       ...+..     +...|++++|+..++++++.+|+++.++..+|.++.
T Consensus        34 ~~g~~~~A~~~~~~~l~~~p~~~~~~-------~~~~~~-----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  101 (330)
T 3hym_B           34 YNCDFKMCYKLTSVVMEKDPFHASCL-------PVHIGT-----LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL  101 (330)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTTTH-------HHHHHH-----HHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCChhhH-------HHHHHH-----HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            34677777778876655555443221       111222     237899999999999999999999999999999999


Q ss_pred             HcC-ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 021175          196 RRK-FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS  274 (316)
Q Consensus       196 ~~g-~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  274 (316)
                      ..| ++++|+++++++++    .+|.++.++..+|.++...|++++|++.++++++.+|++..++..+|.++...|++++
T Consensus       102 ~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (330)
T 3hym_B          102 MVGHKNEHARRYLSKATT----LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL  177 (330)
T ss_dssp             HSCSCHHHHHHHHHHHHT----TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HhhhhHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence            999 99999999999999    7999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          275 ALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       275 A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |+..++++++.+|+++.++..++.++...|++++|
T Consensus       178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  212 (330)
T 3hym_B          178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTA  212 (330)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHH
Confidence            99999999999999999999999999999998755

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.80  E-value=2.8e-18  Score=142.10  Aligned_cols=145  Identities=14%  Similarity=0.108  Sum_probs=139.0

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-CCHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE-GKLD  239 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~-g~~~  239 (316)
                      ...|++++|++.++++++.+|+++.++..+|.++...|++++|+++++++++    ..|.+..++..+|.++... |+++
T Consensus        19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~l~~~~~~~~~~~~   94 (225)
T 2vq2_A           19 MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS----IKPDSAEINNNYGWFLCGRLNRPA   94 (225)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhcCcHH
Confidence            3899999999999999999999999999999999999999999999999999    5888999999999999999 9999


Q ss_pred             HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          240 KGISQFETAVK--LQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       240 ~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +|++.++++++  .+|.+..+++.+|.++...|++++|+..++++++.+|++..++..++.++...|++++|
T Consensus        95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence            99999999999  77788999999999999999999999999999999999999999999999999998755

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.79  E-value=1.2e-18  Score=149.01  Aligned_cols=144  Identities=16%  Similarity=0.136  Sum_probs=131.7

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR--  234 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~--  234 (316)
                      ++..|++++|+..|+++++.+|++   +.+++.+|.++...|++++|+..|+++++..|. +|..+.+++.+|.++..  
T Consensus        25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~  103 (261)
T 3qky_A           25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI-DPRVPQAEYERAMCYYKLS  103 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHC
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHHhc
Confidence            348999999999999999999998   999999999999999999999999999996542 55778999999999999  


Q ss_pred             ------cCCHHHHHHHHHHHHHhCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 021175          235 ------EGKLDKGISQFETAVKLQPGYVTAW-----------------NNLGDAYEKKKDLKSALKAFEEVLLFDPNN--  289 (316)
Q Consensus       235 ------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--  289 (316)
                            .|++++|++.|+++++.+|++..+.                 +.+|.+|...|++++|+..|+++++..|++  
T Consensus       104 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  183 (261)
T 3qky_A          104 PPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW  183 (261)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             ccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence                  9999999999999999999986555                 899999999999999999999999999984  


Q ss_pred             -hhHHHHHHHHHhhCC
Q 021175          290 -KVARPRRDALKDRVP  304 (316)
Q Consensus       290 -~~a~~~l~~l~~~~~  304 (316)
                       +.++..++.++..+|
T Consensus       184 ~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          184 ADDALVGAMRAYIAYA  199 (261)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence             568899999888773

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.79  E-value=3.2e-19  Score=138.66  Aligned_cols=129  Identities=11%  Similarity=0.050  Sum_probs=117.7

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          171 KELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       171 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      ..++++++.+|++...++.+|..+...|++++|+..|+++++    .+|+++.+++++|.++...|++++|++.|+++++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            467788889999999999999999999999999999999999    6999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175          251 LQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV  303 (316)
Q Consensus       251 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~  303 (316)
                      ++|+++.+++++|.++..+|++++|+.+|+++++++|+++........+...+
T Consensus        81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l  133 (142)
T 2xcb_A           81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML  133 (142)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988777666555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.79  E-value=3.2e-18  Score=144.89  Aligned_cols=154  Identities=18%  Similarity=0.172  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN  226 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~  226 (316)
                      .+..++..+.     ..|++++|++.++++++.+|+.+.++..+|.++...|++++|+++++++++    ..|.+..++.
T Consensus        39 ~~~~~a~~~~-----~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~  109 (252)
T 2ho1_A           39 AYIQLGLGYL-----QRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA----SDSRNARVLN  109 (252)
T ss_dssp             HHHHHHHHHH-----HTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHH
T ss_pred             HHHHHHHHHH-----HcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCcHHHHH
Confidence            3444444444     899999999999999999999999999999999999999999999999999    5888999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          227 ALGVSYVREGKLDKGISQFETAVK--LQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       227 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      .+|.++...|++++|++.++++++  .+|.+..++..+|.++...|++++|+.+++++++.+|++..++..++.++...|
T Consensus       110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g  189 (252)
T 2ho1_A          110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER  189 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence            999999999999999999999999  889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 021175          305 LYKGV  309 (316)
Q Consensus       305 ~~~~A  309 (316)
                      ++++|
T Consensus       190 ~~~~A  194 (252)
T 2ho1_A          190 EYVPA  194 (252)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            98755

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.4e-18  Score=130.58  Aligned_cols=119  Identities=17%  Similarity=0.176  Sum_probs=112.6

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 021175          181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWN  260 (316)
Q Consensus       181 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  260 (316)
                      |..+..+..+|..+...|++++|++.|+++++    .+|+++.++.++|.++...|++++|++.++++++++|+++.+++
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            34567899999999999999999999999999    69999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC------CCChhHHHHHHHHHhhC
Q 021175          261 NLGDAYEKKKDLKSALKAFEEVLLFD------PNNKVARPRRDALKDRV  303 (316)
Q Consensus       261 ~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~l~~l~~~~  303 (316)
                      ++|.++..+|++++|+..|+++++++      |++..++..+..+..++
T Consensus        77 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           77 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999      99999999998887764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.78  E-value=5.4e-18  Score=129.22  Aligned_cols=111  Identities=14%  Similarity=0.164  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN  226 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~  226 (316)
                      ++...|..+.     ..|++++|++.|+++++.+|+++.++.++|.++...|++++|++.++++++    ++|+++.+++
T Consensus        15 ~~~~~G~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~a~~   85 (126)
T 4gco_A           15 EEKNKGNEYF-----KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR----LDSKFIKGYI   85 (126)
T ss_dssp             HHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHH
T ss_pred             HHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH----hhhhhhHHHH
Confidence            3344455554     999999999999999999999999999999999999999999999999999    6999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175          227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY  266 (316)
Q Consensus       227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  266 (316)
                      ++|.++..+|++++|++.|+++++++|++.+++.+++.++
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=1.7e-17  Score=145.22  Aligned_cols=145  Identities=19%  Similarity=0.228  Sum_probs=139.6

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|+..++++++.+|+++.++..+|.++...|++++|+++++++++    ..|+++.++..+|.++...|++++
T Consensus       149 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~  224 (327)
T 3cv0_A          149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE----LRPDDAQLWNKLGATLANGNRPQE  224 (327)
T ss_dssp             TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcCCHHH
Confidence            3788999999999999999999999999999999999999999999999999    589999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------ChhHHHHHHHHHhhCCCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN------------NKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~l~~l~~~~~~~~~  308 (316)
                      |++.++++++.+|++..++..+|.++...|++++|...++++++.+|+            +..++..++.++...|++++
T Consensus       225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  304 (327)
T 3cv0_A          225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL  304 (327)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence            999999999999999999999999999999999999999999999999            78999999999999999875


Q ss_pred             C
Q 021175          309 V  309 (316)
Q Consensus       309 A  309 (316)
                      |
T Consensus       305 A  305 (327)
T 3cv0_A          305 V  305 (327)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.78  E-value=5.8e-18  Score=144.88  Aligned_cols=177  Identities=15%  Similarity=0.186  Sum_probs=150.7

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCC----HHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDAS----ATEYFELG  191 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg  191 (316)
                      ..++.+.|...++.+....+....       ++..++..+.     ..|++++|++.++++++ .|++    ..++..+|
T Consensus        15 ~~~~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~-----~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A           15 KNNNYAEAIEVFNKLEAKKYNSPY-------IYNRRAVCYY-----ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCCCST-------THHHHHHHHH-----HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHH-----HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            556777788888866666655442       2333344444     89999999999999999 4433    55699999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 021175          192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD  271 (316)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  271 (316)
                      .++...|++++|+++++++++    .+|.++.++.++|.++...|++++|++.++++++.+|+++.+++++|......++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~  157 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVD----RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE  157 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH----HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcccHHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999    5899999999999999999999999999999999999999999999955555669


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC---CCCC
Q 021175          272 LKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL---YKGV  309 (316)
Q Consensus       272 ~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~---~~~A  309 (316)
                      +++|+..|+++++.+|++..++..++.++...++   +++|
T Consensus       158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A  198 (272)
T 3u4t_A          158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLA  198 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTT
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHH
Confidence            9999999999999999999999999999999887   5544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=3.8e-18  Score=134.08  Aligned_cols=138  Identities=12%  Similarity=0.058  Sum_probs=117.5

Q ss_pred             cchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 021175          118 SENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRR  197 (316)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  197 (316)
                      ++.+.+.+.++.+....+...       ..++.+|..+.     ..|++++|++.|+++++.+|+++.++.++|.++...
T Consensus        11 ~~~e~ai~~~~~a~~~~p~~~-------~~~~~la~~y~-----~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   78 (150)
T 4ga2_A           11 ADVERYIASVQGSTPSPRQKS-------IKGFYFAKLYY-----EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE   78 (150)
T ss_dssp             HHHHHHHHHHHHHSCSHHHHH-------TTHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHhcccCcccH-------HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            455565556664444444433       23344455555     899999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 021175          198 KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQ-FETAVKLQPGYVTAWNNLGDAYEKKKD  271 (316)
Q Consensus       198 g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~lg~~~~~~g~  271 (316)
                      |++++|+.+|+++++    ++|+++.+++++|.++...|++++|.+. ++++++++|+++.++..++.++..+|+
T Consensus        79 ~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           79 ENTDKAVECYRRSVE----LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             CchHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999    6999999999999999999999887776 599999999999999999999988886

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.77  E-value=2.9e-17  Score=131.52  Aligned_cols=162  Identities=20%  Similarity=0.178  Sum_probs=140.3

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++...+...++.+....+...       ..+..++..+.     ..|++++|+..++++++.+|+++.++..+|.++.
T Consensus        20 ~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           20 KAGRYSQAVMLLEQVYDADAFDV-------DVALHLGIAYV-----KTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHTCHHHHHHHHTTTCCTTSCCH-------HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCccCh-------HHHHHHHHHHH-----HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            44566666667765544444332       23333344444     8999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA  275 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  275 (316)
                      ..|++++|.++++++++    ..|.+..++..+|.++...|++++|++.++++++.+|++..++..+|.++...|++++|
T Consensus        88 ~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAE----ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhcCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999    58889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHH
Q 021175          276 LKAFEEVLLFDPNNKVAR  293 (316)
Q Consensus       276 ~~~~~~al~~~p~~~~a~  293 (316)
                      ..+++++++.+|++....
T Consensus       164 ~~~~~~~~~~~~~~~~~~  181 (186)
T 3as5_A          164 LPHFKKANELDEGASVEL  181 (186)
T ss_dssp             HHHHHHHHHHHHCCCGGG
T ss_pred             HHHHHHHHHcCCCchhhH
Confidence            999999999999876543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.77  E-value=1.1e-16  Score=141.51  Aligned_cols=191  Identities=12%  Similarity=0.019  Sum_probs=108.9

Q ss_pred             hhccchHHHHHHHHHHhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 021175          115 ANASENVQMDAVYEIGELFEL---GIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELG  191 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  191 (316)
                      ...++.+.|...++.+....+   .....................+..+...|++++|++.++++++.+|+++.++..+|
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            345667777777776665555   33322222211111111111122333566666666666666666666666666666


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-------------
Q 021175          192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTA-------------  258 (316)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------  258 (316)
                      .++...|++++|++.++++++    ..|.++.++..+|.++...|++++|++.++++++.+|++..+             
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  237 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASK----LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL  237 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHT----TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHH
Confidence            666666666666666666666    455555666666666665565555555555555555554332             


Q ss_pred             -------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175          259 -------------------------------------WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD  301 (316)
Q Consensus       259 -------------------------------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~  301 (316)
                                                           +..+|.++...|++++|+..++++++.+|+++.++..++.++.
T Consensus       238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (359)
T 3ieg_A          238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL  317 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence                                                 3445666666666666666666666666666666666666666


Q ss_pred             hCCCCCCC
Q 021175          302 RVPLYKGV  309 (316)
Q Consensus       302 ~~~~~~~A  309 (316)
                      ..|++++|
T Consensus       318 ~~g~~~~A  325 (359)
T 3ieg_A          318 IEEMYDEA  325 (359)
T ss_dssp             HTTCHHHH
T ss_pred             HcCCHHHH
Confidence            66665543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.77  E-value=1e-17  Score=157.05  Aligned_cols=181  Identities=15%  Similarity=0.093  Sum_probs=159.0

Q ss_pred             chHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 021175          119 ENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK  198 (316)
Q Consensus       119 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  198 (316)
                      +...+...++.+....+...........++...|..+.     ..|++++|+..++++++.+|+ ..++..+|.++...|
T Consensus       217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  290 (537)
T 3fp2_A          217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF-----LKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKE  290 (537)
T ss_dssp             HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH-----hcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhc
Confidence            45556667765555555554444444445566666555     899999999999999999999 999999999999999


Q ss_pred             ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 021175          199 FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKA  278 (316)
Q Consensus       199 ~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  278 (316)
                      ++++|+++++++++    ..|+++.++..+|.++...|++++|++.++++++.+|++..++..+|.++...|++++|+..
T Consensus       291 ~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  366 (537)
T 3fp2_A          291 NSQEFFKFFQKAVD----LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF  366 (537)
T ss_dssp             CCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999    58999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          279 FEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       279 ~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++++++.+|+++.++..++.++...|++++|
T Consensus       367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  397 (537)
T 3fp2_A          367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTA  397 (537)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            9999999999999999999999999998765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.77  E-value=1.3e-17  Score=142.59  Aligned_cols=184  Identities=12%  Similarity=0.108  Sum_probs=149.3

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCC---CHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDA---SATEYFELGA  192 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~  192 (316)
                      ..++...|...|+.+....|.....    ..+++.+|..+.     ..|++++|+..|+++++.+|+   .+.+++.+|.
T Consensus        27 ~~g~~~~A~~~~~~~l~~~p~~~~~----~~a~~~lg~~~~-----~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~   97 (261)
T 3qky_A           27 NQGKYDRAIEYFKAVFTYGRTHEWA----ADAQFYLARAYY-----QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM   97 (261)
T ss_dssp             HTTCHHHHHHHHHHHGGGCSCSTTH----HHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCcch----HHHHHHHHHHHH-----HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence            4567778888888666665554211    134445555555     899999999999999999884   4679999999


Q ss_pred             HHHH--------cCChHHHHHHHHHHHHhcCCCCccHHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          193 VMLR--------RKFYPAATKYLLQAIEKWDGDDQDLAQVY--------------NALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       193 ~~~~--------~g~~~~A~~~~~~al~~~~~~~p~~~~~~--------------~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      ++..        .|++++|+..|+++++..|. ++....+.              +.+|.+|...|++++|+..|+++++
T Consensus        98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  176 (261)
T 3qky_A           98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFD  176 (261)
T ss_dssp             HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            9999        99999999999999995331 22233333              8899999999999999999999999


Q ss_pred             hCCC---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHhhCCCCCCC
Q 021175          251 LQPG---YVTAWNNLGDAYEKK----------KDLKSALKAFEEVLLFDPNNK---VARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       251 ~~p~---~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~---~a~~~l~~l~~~~~~~~~A  309 (316)
                      .+|+   .+.+++.+|.+|..+          |++++|+..|+++++..|+++   .+...++.+...+++++++
T Consensus       177 ~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          177 AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence            9998   578999999999977          999999999999999999995   5566778888888877554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.77  E-value=2.8e-17  Score=150.78  Aligned_cols=178  Identities=8%  Similarity=0.062  Sum_probs=154.1

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++...|...|+.+....+...       .++..++..+.     ..|++++|+..++++++.+|+++.++..+|.++.
T Consensus        38 ~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  105 (450)
T 2y4t_A           38 AAGQLADALSQFHAAVDGDPDNY-------IAYYRRATVFL-----AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL  105 (450)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCccH-------HHHHHHHHHHH-----HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            45677777778886655555443       23344444444     8999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLA---QVYNAL------------GVSYVREGKLDKGISQFETAVKLQPGYVTAWN  260 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~---~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  260 (316)
                      ..|++++|++.|+++++    .+|++.   .++..+            |.++...|++++|++.|+++++.+|++..++.
T Consensus       106 ~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  181 (450)
T 2y4t_A          106 KQGKLDEAEDDFKKVLK----SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE  181 (450)
T ss_dssp             HTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHh----cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            99999999999999999    688877   666555            67799999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          261 NLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       261 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      .+|.+|...|++++|+..|+++++.+|++..++..++.++...|++++|
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  230 (450)
T 2y4t_A          182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS  230 (450)
T ss_dssp             HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999999999999999988755

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.77  E-value=4.5e-18  Score=136.78  Aligned_cols=136  Identities=15%  Similarity=0.223  Sum_probs=123.8

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH-HHHcCCH--
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVS-YVREGKL--  238 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~-~~~~g~~--  238 (316)
                      ..|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++    .+|+++.++.++|.+ +...|++  
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ----LRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhcCCcch
Confidence            678999999999999999999999999999999999999999999999999    588899999999999 8899999  


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD  301 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~  301 (316)
                      ++|++.++++++.+|++..+++++|.+|...|++++|+..|+++++++|++......+..+..
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~  160 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM  160 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999877666655543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.77  E-value=1.5e-18  Score=139.77  Aligned_cols=145  Identities=10%  Similarity=0.058  Sum_probs=129.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH-HcCCH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV-REGKL  238 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~-~~g~~  238 (316)
                      +...|++++|+..++++++.+|+++.+++++|.++...|++++|+..++++++    ..| ++..+..++.+.. ..++.
T Consensus        16 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p-~~~~~~~~~~~~~~~~~~~   90 (176)
T 2r5s_A           16 LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL----EYQ-DNSYKSLIAKLELHQQAAE   90 (176)
T ss_dssp             HHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGC-CHHHHHHHHHHHHHHHHTS
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccC-ChHHHHHHHHHHHHhhccc
Confidence            34899999999999999999999999999999999999999999999999998    577 6666666665533 33455


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHhhCCCCCCC
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN--KVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~l~~l~~~~~~~~~A  309 (316)
                      .+|++.++++++.+|+++.+++++|.++...|++++|+..|+++++.+|+.  +.++..++.++...|+.++|
T Consensus        91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           91 SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            568999999999999999999999999999999999999999999999986  55999999999999998765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.77  E-value=4.3e-18  Score=148.29  Aligned_cols=146  Identities=12%  Similarity=0.029  Sum_probs=138.7

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      +...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..++++++    .+|+........+..+...++.+
T Consensus       127 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~~~~~~~l~~~~~~~  202 (287)
T 3qou_A          127 LMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL----QDQDTRYQGLVAQIELLXQAADT  202 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG----GGCSHHHHHHHHHHHHHHHHTSC
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch----hhcchHHHHHHHHHHHHhhcccC
Confidence            34899999999999999999999999999999999999999999999999999    58888888888888899999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHhhCCCCCCC
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN--KVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +|++.++++++.+|+++.+++++|.++...|++++|+..|+++++.+|++  ..++.+++.++..+|+.+++
T Consensus       203 ~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          203 PEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL  274 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred             ccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence            99999999999999999999999999999999999999999999999998  88999999999999987654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.77  E-value=1.5e-17  Score=139.47  Aligned_cols=149  Identities=12%  Similarity=0.089  Sum_probs=131.7

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR--  234 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~--  234 (316)
                      ++..|++++|+..|+++++..|+.   ..+++.+|.++...|++++|++.|+++++..|. ++..+.+++.+|.++..  
T Consensus        14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~~~g~~~~~~~   92 (225)
T 2yhc_A           14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMYMRGLTNMALD   92 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHHHHHHHHHhhh
Confidence            448999999999999999998876   479999999999999999999999999996442 34445689999999986  


Q ss_pred             ----------------cCCHHHHHHHHHHHHHhCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHH
Q 021175          235 ----------------EGKLDKGISQFETAVKLQPGYVTAW-----------------NNLGDAYEKKKDLKSALKAFEE  281 (316)
Q Consensus       235 ----------------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~  281 (316)
                                      .|++++|++.|+++++.+|++..+.                 +.+|.+|...|++++|+..|++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  172 (225)
T 2yhc_A           93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG  172 (225)
T ss_dssp             C--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence                            5799999999999999999986443                 6789999999999999999999


Q ss_pred             HHhcCCCCh---hHHHHHHHHHhhCCCCCCC
Q 021175          282 VLLFDPNNK---VARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       282 al~~~p~~~---~a~~~l~~l~~~~~~~~~A  309 (316)
                      +++..|+++   +++..++.++.++|++++|
T Consensus       173 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A  203 (225)
T 2yhc_A          173 MLRDYPDTQATRDALPLMENAYRQMQMNAQA  203 (225)
T ss_dssp             HHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence            999999986   6799999999999998765

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.77  E-value=3.4e-18  Score=162.69  Aligned_cols=132  Identities=12%  Similarity=0.032  Sum_probs=81.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++++|++.++++++.+|+++.++.++|.++...|++++|+++++++++    .+|++..+++++|.++...|++++|
T Consensus        35 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A  110 (568)
T 2vsy_A           35 GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD----AAPEHPGIALWLGHALEDAGQAEAA  110 (568)
T ss_dssp             HHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            556666666666666666666666666666666666666666666666666    3555566666666666666666666


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKK---KDLKSALKAFEEVLLFDPNNKVARPRRD  297 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~l~  297 (316)
                      ++.|+++++.+|++..++.++|.++..+   |++++|.+.++++++.+|++...+..++
T Consensus       111 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          111 AAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            6666666666666666666666666666   6666666666666666666555554443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.76  E-value=6.8e-17  Score=148.19  Aligned_cols=190  Identities=9%  Similarity=-0.019  Sum_probs=115.4

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 021175          115 ANASENVQMDAVYEIGELFELGIQ---LSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELG  191 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  191 (316)
                      ...++.+.|...++.+....+...   .............+....+..+...|++++|+..++++++.+|+++.++..+|
T Consensus       105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  184 (450)
T 2y4t_A          105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA  184 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            445677777778876655555443   22222211211112222233344677777777777777777777777777777


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH---------
Q 021175          192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL---------  262 (316)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---------  262 (316)
                      .++...|++++|++.|+++++    .+|.++.++..+|.++...|++++|++.|+++++.+|++...+..+         
T Consensus       185 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  260 (450)
T 2y4t_A          185 ECFIKEGEPRKAISDLKAASK----LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL  260 (450)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHH----HHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            777777777777777777777    3566666666666666666666666666666666666665555444         


Q ss_pred             ---HHHHHHcCCHHHHHHHHHHHHhcCCCChh----HHHHHHHHHhhCCCCCC
Q 021175          263 ---GDAYEKKKDLKSALKAFEEVLLFDPNNKV----ARPRRDALKDRVPLYKG  308 (316)
Q Consensus       263 ---g~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~l~~l~~~~~~~~~  308 (316)
                         |.++...|++++|+..|+++++++|+++.    .+..++.++...|++++
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~  313 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE  313 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence               55666666666666666666666665532    45555555555555543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.76  E-value=4.9e-17  Score=154.63  Aligned_cols=178  Identities=19%  Similarity=0.218  Sum_probs=105.7

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++.+.|...|+.+....+....       ++..++..+.     ..|++++|++.|+++++.+|++..++..+|.++.
T Consensus       385 ~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  452 (597)
T 2xpi_A          385 CVNKISEARRYFSKSSTMDPQFGP-------AWIGFAHSFA-----IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM  452 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHH-----HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            445556666666544443333221       2222233332     5666666666666666666666666666666666


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCc-HHHHHHHHHHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL------QPGY-VTAWNNLGDAYEK  268 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~lg~~~~~  268 (316)
                      ..|++++|+++|+++++    ..|.++.++..+|.++...|++++|++.|+++++.      +|++ ..++..+|.++..
T Consensus       453 ~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~  528 (597)
T 2xpi_A          453 QLGNILLANEYLQSSYA----LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK  528 (597)
T ss_dssp             HHTCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            66666666666666666    35556666666666666666666666666666665      4443 5566666666666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          269 KKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       269 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      .|++++|++.++++++.+|+++.++..++.++...|++++|
T Consensus       529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  569 (597)
T 2xpi_A          529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA  569 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            66666666666666666666666666666666666665443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.76  E-value=1.2e-17  Score=142.80  Aligned_cols=146  Identities=12%  Similarity=0.113  Sum_probs=131.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      +...|++++|+..++++++.+|+++.++..+|.++...|++++|+++++++++. +........++.++|.++...|+++
T Consensus        13 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~~~~   91 (272)
T 3u4t_A           13 LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKGQDS   91 (272)
T ss_dssp             HHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHcccHH
Confidence            348999999999999999999999999999999999999999999999999992 2112233677999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH-HHHhhCCCCC
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRD-ALKDRVPLYK  307 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~-~l~~~~~~~~  307 (316)
                      +|++.|+++++.+|+++.++.++|.+|...|++++|+.+|+++++.+|+++.++..++ .++.. ++++
T Consensus        92 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~  159 (272)
T 3u4t_A           92 LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYV  159 (272)
T ss_dssp             HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCHH
T ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHHH
Confidence            9999999999999999999999999999999999999999999999999999999999 55544 3444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.76  E-value=1.7e-16  Score=138.86  Aligned_cols=144  Identities=19%  Similarity=0.206  Sum_probs=110.7

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFEL--------------GA-VMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN  226 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------g~-~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~  226 (316)
                      ..|++++|++.++++++.+|+....+..+              +. ++...|++++|+++++++++    ..|.+..++.
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~  176 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE----MNPNDAQLHA  176 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH----HSTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh----hCCCCHHHHH
Confidence            44455555555555555555444444433              33 34444555555555555555    4677788999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      .+|.++...|++++|++.++++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..++.++...|++
T Consensus       177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~  256 (327)
T 3cv0_A          177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY  256 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q 021175          307 KGV  309 (316)
Q Consensus       307 ~~A  309 (316)
                      ++|
T Consensus       257 ~~A  259 (327)
T 3cv0_A          257 DLA  259 (327)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.76  E-value=1.5e-18  Score=168.65  Aligned_cols=144  Identities=14%  Similarity=-0.020  Sum_probs=139.0

Q ss_pred             HHhhhHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 021175          161 LVRRELDLSAKELQEQV--------RSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY  232 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~  232 (316)
                      ...|++++|++.+++++        +.+|++..+++.+|.++...|++++|++.|+++++    .+|++..+++++|.++
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~  477 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE----RVGWRWRLVWYRAVAE  477 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHCCCHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCcchHHHHHHHHHHH
Confidence            47899999999999999        99999999999999999999999999999999999    6999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          233 VREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       233 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ..+|++++|++.|+++++++|+++.+++++|.++..+|++++ ++.|+++++++|++..++.+++.++...|++++|
T Consensus       478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A  553 (681)
T 2pzi_A          478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA  553 (681)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999999 9999999999999999999999999999998765

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.76  E-value=5.7e-18  Score=134.68  Aligned_cols=123  Identities=21%  Similarity=0.251  Sum_probs=110.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 021175          180 GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAW  259 (316)
Q Consensus       180 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  259 (316)
                      ++..+..++.+|.++...|++++|+++|+++++    .+|+++.+++++|.+|...|++++|++.|+++++++|++..++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   82 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALS----IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW   82 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            345678999999999999999999999999999    6999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH--HHHHHhhCCCC
Q 021175          260 NNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR--RDALKDRVPLY  306 (316)
Q Consensus       260 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~--l~~l~~~~~~~  306 (316)
                      +++|.+|..+|++++|+.+|+++++++|++..++..  +..+..++++.
T Consensus        83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  131 (164)
T 3sz7_A           83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA  131 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999985544  44445444443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.75  E-value=1.6e-16  Score=135.73  Aligned_cols=163  Identities=15%  Similarity=0.030  Sum_probs=125.2

Q ss_pred             ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 021175          117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLR  196 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  196 (316)
                      .++.+.|...++.+....+...   .....++..+|..+.     ..|++++|+..++++++.+|+++.++..+|.++..
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~   89 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTD---DERAQLLYERGVLYD-----SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ   89 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCH---HHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccC---chhHHHHHHHHHHHH-----HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            3455666666664443311111   011134444455554     88999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--------------------
Q 021175          197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV--------------------  256 (316)
Q Consensus       197 ~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--------------------  256 (316)
                      .|++++|+++++++++    .+|.+..++.++|.++...|++++|++.++++++.+|++.                    
T Consensus        90 ~~~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~  165 (275)
T 1xnf_A           90 AGNFDAAYEAFDSVLE----LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE  165 (275)
T ss_dssp             TTCHHHHHHHHHHHHH----HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHh----cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHH
Confidence            9999999999999999    5888889999999999999999999999999999888764                    


Q ss_pred             --------------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175          257 --------------------------------------------------TAWNNLGDAYEKKKDLKSALKAFEEVLLFD  286 (316)
Q Consensus       257 --------------------------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  286 (316)
                                                                        .++..+|.+|...|++++|...|+++++.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  245 (275)
T 1xnf_A          166 VLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  245 (275)
T ss_dssp             HHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence                                                              456677777888888888888888888887


Q ss_pred             CCChh
Q 021175          287 PNNKV  291 (316)
Q Consensus       287 p~~~~  291 (316)
                      |++..
T Consensus       246 p~~~~  250 (275)
T 1xnf_A          246 VHNFV  250 (275)
T ss_dssp             CTTCH
T ss_pred             chhHH
Confidence            76654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.75  E-value=7.2e-17  Score=122.10  Aligned_cols=125  Identities=28%  Similarity=0.522  Sum_probs=120.2

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|+..++++++.+|++..++..+|.++...|++++|.++++++++    ..|.+..++..+|.++...|++++
T Consensus        12 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~   87 (136)
T 2fo7_A           12 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRSAEAWYNLGNAYYKQGDYDE   87 (136)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH----HCCCchHHHHHHHHHHHHhcCHHH
Confidence            3889999999999999999999999999999999999999999999999999    588889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  289 (316)
                      |++.++++++.+|++..++..+|.++...|++++|...++++++.+|++
T Consensus        88 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999999999999999863

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.75  E-value=1.2e-17  Score=132.56  Aligned_cols=129  Identities=17%  Similarity=0.143  Sum_probs=115.6

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--------------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--------------DDQDLAQVYNALGVSYVREGKLDKGISQFETA  248 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  248 (316)
                      .+..+...|..++..|+|++|+..|+++++..+.              .+|....+++++|.+|..+|++++|+..++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3567899999999999999999999999994211              06778899999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHhhCCCCCCCCC
Q 021175          249 VKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK-VARPRRDALKDRVPLYKGVPV  311 (316)
Q Consensus       249 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~l~~l~~~~~~~~~A~~  311 (316)
                      ++++|+++.+++++|.+|..+|++++|+..|+++++++|+++ .+...+..+...+++.++.+.
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k  153 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSR  153 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999 778888888888777665544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.75  E-value=1.2e-16  Score=151.89  Aligned_cols=175  Identities=19%  Similarity=0.160  Sum_probs=151.1

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 021175          115 ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVM  194 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  194 (316)
                      ...++.+.|...|+.+....+...       ..+..++..+.     ..|++++|++.|+++++.+|+++.++..+|.++
T Consensus       418 ~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  485 (597)
T 2xpi_A          418 AIEGEHDQAISAYTTAARLFQGTH-------LPYLFLGMQHM-----QLGNILLANEYLQSSYALFQYDPLLLNELGVVA  485 (597)
T ss_dssp             HHHTCHHHHHHHHHHHHHTTTTCS-------HHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccch-------HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            445677777778876555554433       23333444444     899999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhcCC--CCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 021175          195 LRRKFYPAATKYLLQAIEKWDG--DDQDL-AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD  271 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~--~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  271 (316)
                      ...|++++|++.|+++++..+.  .+|+. ..++..+|.++...|++++|++.++++++.+|+++.++..+|.+|...|+
T Consensus       486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  565 (597)
T 2xpi_A          486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI  565 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence            9999999999999999995331  26665 88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175          272 LKSALKAFEEVLLFDPNNKVARPRRDALKD  301 (316)
Q Consensus       272 ~~~A~~~~~~al~~~p~~~~a~~~l~~l~~  301 (316)
                      +++|.+.|+++++++|+++.++..++.++.
T Consensus       566 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          566 PGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            999999999999999999999999998764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.75  E-value=3.3e-17  Score=155.91  Aligned_cols=143  Identities=13%  Similarity=0.066  Sum_probs=119.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHH
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI  242 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~  242 (316)
                      .|++++|++.++++++.+|+++.++.++|.++...|++++|+++|+++++    .+|++..++.++|.++..+|++++|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~   77 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA----LHPGHPEAVARLGRVRWTQQRHAEAA   77 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            47899999999999999999999999999999999999999999999999    79999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC---CCCCCC
Q 021175          243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV---PLYKGV  309 (316)
Q Consensus       243 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~---~~~~~A  309 (316)
                      +.|+++++++|++..+++++|.+|..+|++++|++.|+++++++|++..++.+++.++...   |++++|
T Consensus        78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A  147 (568)
T 2vsy_A           78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL  147 (568)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999   665443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.75  E-value=9.1e-18  Score=128.07  Aligned_cols=112  Identities=24%  Similarity=0.256  Sum_probs=100.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY-------  255 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------  255 (316)
                      .+.++.++|..++..|+|++|+++|+++++    ++|+++.++.++|.+|..+|++++|++.++++++++|++       
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~----~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   82 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence            456788999999999999999999999999    699999999999999999999999999999999998865       


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      ..++.++|.++..+|++++|+++|+++++.+|+ ++....+..+
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence            468999999999999999999999999999885 5555555544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.75  E-value=3.2e-19  Score=158.97  Aligned_cols=130  Identities=13%  Similarity=0.137  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 021175          146 LGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDAS---------------ATEYFELGAVMLRRKFYPAATKYLLQA  210 (316)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a  210 (316)
                      .++...|..+.     ..|++++|+..|+++++.+|++               ..++.++|.++...|++++|+++++++
T Consensus       148 ~~~~~~g~~~~-----~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          148 TIVKERGTVYF-----KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45555555555     7888888888888888888877               578888888888888888888888888


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 021175          211 IEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA-LKAFEEVLL  284 (316)
Q Consensus       211 l~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~  284 (316)
                      ++    .+|+++.+++++|.+|..+|++++|++.|+++++++|++..++.++|.++..+|++++| ...|++.+.
T Consensus       223 l~----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          223 LE----LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH----hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88    57888888888888888888888888888888888888888888888888888888887 456666664

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.74  E-value=2.1e-16  Score=130.47  Aligned_cols=130  Identities=18%  Similarity=0.227  Sum_probs=118.8

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      +...|++++|+..+++++  +| ++.+++++|.++...|++++|+++|+++++    .+|+++.+++++|.++...|+++
T Consensus        16 ~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~lg~~~~~~~~~~   88 (213)
T 1hh8_A           16 AADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSIN----RDKHLAVAYFQRGMLYYQTEKYD   88 (213)
T ss_dssp             HHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccchHHHHHHHHHHHHcccHH
Confidence            348999999999999985  33 789999999999999999999999999999    58999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 021175          240 KGISQFETAVKLQPGYV----------------TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRR  296 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  296 (316)
                      +|++.|+++++..|++.                .+++++|.++..+|++++|+.+|+++++++|++.......
T Consensus        89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  161 (213)
T 1hh8_A           89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK  161 (213)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence            99999999999888765                9999999999999999999999999999999875544333

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.74  E-value=4.6e-17  Score=123.55  Aligned_cols=122  Identities=19%  Similarity=0.251  Sum_probs=115.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 021175          180 GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAW  259 (316)
Q Consensus       180 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  259 (316)
                      .|....+++.+|..+...|++++|+++++++++    ..|.+..++.++|.++...|++++|++.++++++.+|++..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   87 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY   87 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT----TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHH
Confidence            456788999999999999999999999999999    6899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          260 NNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       260 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      +++|.++...|++++|+.+++++++.+|++..++..++.++...|+
T Consensus        88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999887664

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.74  E-value=3e-16  Score=136.89  Aligned_cols=137  Identities=14%  Similarity=0.035  Sum_probs=94.6

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHH--HHHHHcCCHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALG--VSYVREGKLD  239 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg--~~~~~~g~~~  239 (316)
                      ..|++++|++.+++     |+++.++..+|.++...|++++|++.++++++    .+|++.......+  ..+...|+++
T Consensus       113 ~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~l~~a~~~l~~~~~~~~  183 (291)
T 3mkr_A          113 YDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQD----QDEDATLTQLATAWVSLAAGGEKLQ  183 (291)
T ss_dssp             HTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCTTHHH
T ss_pred             HCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCcCcHHHHHHHHHHHHHhCchHHH
Confidence            67777777777766     66777777777777777777777777777777    3555443322222  2222346777


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCC
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK  307 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~  307 (316)
                      +|++.|+++++.+|+++.+++++|.++..+|++++|...|+++++.+|++++++.+++.++...|++.
T Consensus       184 eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~  251 (291)
T 3mkr_A          184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP  251 (291)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCH
Confidence            77777777777777777777777777777777777777777777777777777777777777777653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.74  E-value=1.9e-17  Score=141.59  Aligned_cols=164  Identities=16%  Similarity=0.113  Sum_probs=132.0

Q ss_pred             ccchHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc--------CCCCHHHH
Q 021175          117 ASENVQMDAVYEIGELFELGIQ-LSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRS--------GDASATEY  187 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~  187 (316)
                      -++.++|...|+.+........ ........++..+|..+.     ..|++++|+..++++++.        .|....++
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR-----DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATL   88 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence            4456666667764433322111 111122245555566665     899999999999999987        36668899


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCc
Q 021175          188 FELGAVMLRRKFYPAATKYLLQAIEKWDG----DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL--------QPGY  255 (316)
Q Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~  255 (316)
                      .++|.++...|++++|+++++++++....    .+|....++.++|.++...|++++|++++++++++        +|..
T Consensus        89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  168 (283)
T 3edt_B           89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV  168 (283)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            99999999999999999999999995321    26888999999999999999999999999999998        7777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      ..++.++|.++..+|++++|+.++++++++
T Consensus       169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          169 AKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            899999999999999999999999999986

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.74  E-value=4.7e-17  Score=122.74  Aligned_cols=125  Identities=18%  Similarity=0.272  Sum_probs=117.1

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 021175          179 SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTA  258 (316)
Q Consensus       179 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  258 (316)
                      .+|..+..+..+|..+...|++++|++.++++++    ..|+++.++..+|.++...|++++|++.++++++.+|+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   82 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA   82 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH
Confidence            3456678899999999999999999999999999    588889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCC
Q 021175          259 WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK  307 (316)
Q Consensus       259 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~  307 (316)
                      ++.+|.++...|++++|+.+++++++.+|++..++..++.++...|+++
T Consensus        83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           83 YGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999988764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.73  E-value=1.3e-17  Score=130.66  Aligned_cols=119  Identities=14%  Similarity=0.073  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--------DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL----  251 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----  251 (316)
                      +..+.+.|+.+...|+|++|++.|+++++..|.        ..|.++.+|.++|.++..+|++++|+..+++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            456888999999999999999999999995432        01124559999999999999999999999999999    


Q ss_pred             ---CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          252 ---QPGYVTAW----NNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       252 ---~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                         +|++..+|    +++|.++..+|++++|+.+|+++++++|++......+..+.+.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~  148 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV  148 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence               99999999    9999999999999999999999999999998877777666544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.73  E-value=7.1e-17  Score=140.79  Aligned_cols=171  Identities=13%  Similarity=0.011  Sum_probs=131.1

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCC------HHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDAS------ATEYFE  189 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  189 (316)
                      ..++.+.|...|..+..+.+..... .....++..+|..+.     ..|++++|+..++++++..|..      +.++.+
T Consensus        49 ~~g~~~~A~~~~~~al~~~~~~~~~-~~~a~~~~~lg~~~~-----~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~  122 (292)
T 1qqe_A           49 LRKELNLAGDSFLKAADYQKKAGNE-DEAGNTYVEAYKCFK-----SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (292)
T ss_dssp             HTTCTHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4566777777887555544332211 122245566666665     8999999999999999987643      568999


Q ss_pred             HHHHHHHc-CChHHHHHHHHHHHHhcCCCC-c-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-------HH
Q 021175          190 LGAVMLRR-KFYPAATKYLLQAIEKWDGDD-Q-DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVT-------AW  259 (316)
Q Consensus       190 lg~~~~~~-g~~~~A~~~~~~al~~~~~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~  259 (316)
                      +|.+|... |++++|+.+|+++++..+... + ....++.++|.++..+|++++|+++|++++++.|++..       ++
T Consensus       123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  202 (292)
T 1qqe_A          123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (292)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            99999996 999999999999999643211 1 22678999999999999999999999999999987643       68


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175          260 NNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       260 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  292 (316)
                      .++|.++..+|++++|+.+|+++++++|++...
T Consensus       203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            999999999999999999999999999987764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.73  E-value=6.9e-17  Score=133.79  Aligned_cols=118  Identities=18%  Similarity=0.222  Sum_probs=112.2

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHH----------------HHHHHHHcCCHHHHHHHHH
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNA----------------LGVSYVREGKLDKGISQFE  246 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~  246 (316)
                      .++.+...|..+...|++++|+.+|+++++    .+|+++.+++.                +|.++...|++++|++.|+
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA----LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            467788999999999999999999999999    69999999999                9999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       247 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      ++++++|+++.+++++|.++...|++++|+.+|+++++++|+++.++.+++.++...|
T Consensus        79 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           79 ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999998875443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.73  E-value=4e-18  Score=139.84  Aligned_cols=145  Identities=15%  Similarity=0.051  Sum_probs=121.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHH----------------HHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLA----------------QVY  225 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~----------------~~~  225 (316)
                      ..++++++.+.++......+..+..+..+|..+...|+|++|++.|+++++    ..|.++                .++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~~~~~~   91 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD----FFIHTEEWDDQILLDKKKNIEISCN   91 (198)
T ss_dssp             ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHhcccccchhhHHHHHHHHHHHHH
Confidence            456666666666665555666778899999999999999999999999999    455544                889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          226 NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       226 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      .++|.++...|++++|++.++++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+++
T Consensus        92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A           92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  171 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             CCCCC
Q 021175          306 YKGVP  310 (316)
Q Consensus       306 ~~~A~  310 (316)
                      .+++.
T Consensus       172 ~~~~~  176 (198)
T 2fbn_A          172 ARKKD  176 (198)
T ss_dssp             HHC--
T ss_pred             HHHHH
Confidence            76554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.72  E-value=2.2e-16  Score=138.57  Aligned_cols=140  Identities=14%  Similarity=-0.032  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHH-HHHHHHHHHHHcCCHHHHHH
Q 021175          166 LDLSAKELQEQVR-SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQ-VYNALGVSYVREGKLDKGIS  243 (316)
Q Consensus       166 ~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~-~~~~lg~~~~~~g~~~~A~~  243 (316)
                      .++|+..|+++++ .+|++..+|.++|.++...|++++|.+.|+++++    .+|.++. +|.++|.++.+.|++++|.+
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~  155 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRM  155 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----ccccCccHHHHHHHHHHHHhcCHHHHHH
Confidence            4888899999998 6888888899999988888999999999999988    6777765 88888888888888888888


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          244 QFETAVKLQPGYVTAWNNLGDAYEK-KKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       244 ~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      .|+++++.+|.+..++...+..... .|++++|...|+++++.+|+++.++..++.++...|++++|
T Consensus       156 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A  222 (308)
T 2ond_A          156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT  222 (308)
T ss_dssp             HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            8888888888887777766665443 68888888888888888888888888888888888776544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.72  E-value=4.5e-17  Score=139.24  Aligned_cols=133  Identities=21%  Similarity=0.229  Sum_probs=123.9

Q ss_pred             HhhhHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175          162 VRRELDLSAKELQEQVRSG----DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK  237 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~  237 (316)
                      ..+++++|+..++++++..    |..+.++..+|.++...|++++|+++|+++++    .+|.++.++.++|.++...|+
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~~~   92 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDMPEVFNYLGIYLTQAGN   92 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHccC
Confidence            5689999999999999974    46788999999999999999999999999999    589999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175          238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA  298 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  298 (316)
                      +++|++.|+++++.+|++..++.++|.+|...|++++|+.+++++++++|++.......+.
T Consensus        93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  153 (275)
T 1xnf_A           93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL  153 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999866554443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.72  E-value=1.6e-16  Score=121.73  Aligned_cols=123  Identities=17%  Similarity=0.195  Sum_probs=112.8

Q ss_pred             HcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 021175          178 RSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVT  257 (316)
Q Consensus       178 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  257 (316)
                      ..+|..+..+..+|..+...|++++|+.+|+++++    .+|+++.+++++|.++...|++++|++.++++++++|+++.
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~   78 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK   78 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh----hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH
Confidence            35678899999999999999999999999999999    58999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ChhHHHHHHHHHhhCC
Q 021175          258 AWNNLGDAYEKKKDLKSALKAFEEVLLFDPN-----NKVARPRRDALKDRVP  304 (316)
Q Consensus       258 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~l~~l~~~~~  304 (316)
                      +++++|.++...|++++|+.+|+++++++|+     +......+..+..+..
T Consensus        79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           79 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  130 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998     7777777777766543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.3e-16  Score=148.54  Aligned_cols=183  Identities=13%  Similarity=0.107  Sum_probs=157.3

Q ss_pred             ccchHHHHHHHHHHhh-----h--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHH
Q 021175          117 ASENVQMDAVYEIGEL-----F--ELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFE  189 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  189 (316)
                      .++.+.|...++.+..     .  .+...........++..++..+.     ..|++++|+..++++++.+|+ ..++..
T Consensus       202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~A~~~~~~~l~~~~~-~~~~~~  275 (514)
T 2gw1_A          202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF-----LKNDPLGAHEDIKKAIELFPR-VNSYIY  275 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH-----HSSCHHHHHHHHHHHHHHCCC-HHHHHH
T ss_pred             hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHhhCcc-HHHHHH
Confidence            5677777777775544     2  11111111122234455555555     899999999999999999999 999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 021175          190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK  269 (316)
Q Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  269 (316)
                      +|.++...|++++|++.++++++    ..|.+..++..+|.++...|++++|++.++++++.+|++..++..+|.++...
T Consensus       276 l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  351 (514)
T 2gw1_A          276 MALIMADRNDSTEYYNYFDKALK----LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE  351 (514)
T ss_dssp             HHHHHHTSSCCTTGGGHHHHHHT----TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhh----cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc
Confidence            99999999999999999999999    68999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          270 KDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       270 g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |++++|+..++++++.+|+++.++..++.++...|++++|
T Consensus       352 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  391 (514)
T 2gw1_A          352 NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKA  391 (514)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999999999999999998655

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.71  E-value=4.1e-16  Score=115.38  Aligned_cols=115  Identities=20%  Similarity=0.247  Sum_probs=109.2

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL  262 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  262 (316)
                      .+..++.+|..+...|++++|+++++++++    ..|.++.++.++|.++...|++++|++.++++++.+|+++.+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   78 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK   78 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            467789999999999999999999999999    5888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175          263 GDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD  301 (316)
Q Consensus       263 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~  301 (316)
                      |.++...|++++|...++++++.+|+++.++..++.+..
T Consensus        79 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           79 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            999999999999999999999999999999999988764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.71  E-value=1.2e-16  Score=139.22  Aligned_cols=148  Identities=14%  Similarity=0.086  Sum_probs=128.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-C-ccHHHHHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDA------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD-D-QDLAQVYNALGVSYV  233 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~-p~~~~~~~~lg~~~~  233 (316)
                      ..|++++|++.|+++++..+.      .+.++.++|.++...|++++|+.+|++++++.+.. + +..+.++.++|.+|.
T Consensus        49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~  128 (292)
T 1qqe_A           49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (292)
T ss_dssp             HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            789999999999999987532      36799999999999999999999999999964321 1 123678999999999


Q ss_pred             Hc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-------HHHHHHHH
Q 021175          234 RE-GKLDKGISQFETAVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV-------ARPRRDAL  299 (316)
Q Consensus       234 ~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------a~~~l~~l  299 (316)
                      .. |++++|+++|++++++.|++      ..++.++|.++..+|++++|+.+|++++++.|++..       .+.+++.+
T Consensus       129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~  208 (292)
T 1qqe_A          129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC  208 (292)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred             HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence            96 99999999999999998754      578999999999999999999999999999998765       56888999


Q ss_pred             HhhCCCCCCC
Q 021175          300 KDRVPLYKGV  309 (316)
Q Consensus       300 ~~~~~~~~~A  309 (316)
                      +...|++++|
T Consensus       209 ~~~~g~~~~A  218 (292)
T 1qqe_A          209 QLAATDAVAA  218 (292)
T ss_dssp             HHHTTCHHHH
T ss_pred             HHHcCCHHHH
Confidence            9999988654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=5.3e-16  Score=119.97  Aligned_cols=121  Identities=20%  Similarity=0.201  Sum_probs=114.5

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175          179 SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL---AQVYNALGVSYVREGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       179 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  255 (316)
                      .+|.....++.+|..+...|++++|+++|+++++    ..|++   ..++.++|.++...|++++|++.++++++.+|++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD   98 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence            4577899999999999999999999999999999    68877   8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175          256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV  303 (316)
Q Consensus       256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~  303 (316)
                      ..+++++|.++...|++++|+.+|+++++++|++..++..++.+....
T Consensus        99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  146 (148)
T 2dba_A           99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS  146 (148)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999998887654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.71  E-value=2.2e-16  Score=148.02  Aligned_cols=177  Identities=11%  Similarity=0.178  Sum_probs=129.4

Q ss_pred             ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 021175          117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLR  196 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  196 (316)
                      .++...|...++.+....+...       .++..++..+.     ..|++++|++.++++++.+|+++.++..+|.++..
T Consensus       289 ~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  356 (537)
T 3fp2_A          289 KENSQEFFKFFQKAVDLNPEYP-------PTYYHRGQMYF-----ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK  356 (537)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHhccCCCCH-------HHHHHHHHHHH-----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3445555555554444433332       12333333333     77888888888888888888888888888888888


Q ss_pred             cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHc-
Q 021175          197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV------TAWNNLGDAYEKK-  269 (316)
Q Consensus       197 ~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~-  269 (316)
                      .|++++|+++++++++    ..|+++.++.++|.++...|++++|++.|+++++.+|++.      ..++.+|.++... 
T Consensus       357 ~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~  432 (537)
T 3fp2_A          357 QGKFTESEAFFNETKL----KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS  432 (537)
T ss_dssp             TTCHHHHHHHHHHHHH----HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHh
Confidence            8888888888888888    4777777888888888888888888888888887776543      2355667777777 


Q ss_pred             ---------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          270 ---------KDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       270 ---------g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                               |++++|+..|+++++.+|++..++..++.++...|++++|
T Consensus       433 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A  481 (537)
T 3fp2_A          433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA  481 (537)
T ss_dssp             TC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence                     8888888888888888888888888888888888887654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.70  E-value=7.1e-17  Score=150.24  Aligned_cols=144  Identities=13%  Similarity=0.190  Sum_probs=106.1

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++++|+..++++++.+|+++.++..+|.++...|++++|++.++++++    ..|.++.++.++|.++...|++++|
T Consensus       316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A  391 (514)
T 2gw1_A          316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR----KFPEAPEVPNFFAEILTDKNDFDKA  391 (514)
T ss_dssp             HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH----HSTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HcccCHHHHHHHHHHHHHCCCHHHH
Confidence            667777777777777777777777777777777777777777777777777    4666667777777777777777777


Q ss_pred             HHHHHHHHHhCCCcHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          242 ISQFETAVKLQPGYVT------AWNNLGDAYEK---KKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~------~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++.++++++.+|++..      +++.+|.++..   .|++++|+..++++++.+|++..++..++.++...|++++|
T Consensus       392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  468 (514)
T 2gw1_A          392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA  468 (514)
T ss_dssp             HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHH
Confidence            7777777777776644      77777777777   77777777777777777777777777777777777776544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.70  E-value=2.9e-18  Score=159.10  Aligned_cols=140  Identities=17%  Similarity=0.186  Sum_probs=97.8

Q ss_pred             hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH---------------HHHHHHH
Q 021175          164 RELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL---------------AQVYNAL  228 (316)
Q Consensus       164 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~---------------~~~~~~l  228 (316)
                      +++++|+..++++++..|+.+..+.++|..+...|+|++|+.+|+++++.    .|.+               ..+++++
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nl  323 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW----LEMEYGLSEKESKASESFLLAAFLNL  323 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccCChHHHHHHHHHHHHHHHHH
Confidence            34555666666666666677777777777777777777777777777774    4433               5677777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCC
Q 021175          229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK  307 (316)
Q Consensus       229 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~  307 (316)
                      |.+|.++|++++|++.|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+++++
T Consensus       324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777777777777777777777777777777777766665543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.70  E-value=6.8e-16  Score=115.27  Aligned_cols=121  Identities=30%  Similarity=0.557  Sum_probs=111.3

Q ss_pred             CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 021175          180 GDAS-ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTA  258 (316)
Q Consensus       180 ~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  258 (316)
                      +|.. ..+++.+|.++...|++++|++.++++++    ..|.+..++..+|.++...|++++|+..++++++.+|++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   79 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA   79 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence            4544 78899999999999999999999999999    588889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          259 WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       259 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      +..+|.++...|++++|...++++++.+|+++.++..++.++...|
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999998887654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.70  E-value=1.4e-16  Score=120.41  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 021175          185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGD  264 (316)
Q Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  264 (316)
                      ..++.+|..+...|++++|+..++++++    .+|+++.+++.+|.++...|++++|++.|+++++++|+++.+++++|.
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~   93 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   93 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3578999999999999999999999999    699999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChh
Q 021175          265 AYEKKKDLKSALKAFEEVLLFDPNNKV  291 (316)
Q Consensus       265 ~~~~~g~~~~A~~~~~~al~~~p~~~~  291 (316)
                      ++...|++++|+..|+++++++|++..
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           94 SHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999999998754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.70  E-value=1.1e-15  Score=134.19  Aligned_cols=173  Identities=14%  Similarity=0.053  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcC
Q 021175          121 VQMDAVYEIGEL-FELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASAT-EYFELGAVMLRRK  198 (316)
Q Consensus       121 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g  198 (316)
                      +.|...|+.+.. +.+....       .+...+.++.     ..|++++|.+.|+++++.+|+++. +|.++|.++...|
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~-------~~~~~~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  148 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNML-------LYFAYADYEE-----SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE  148 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHH-------HHHHHHHHHH-----HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHH-------HHHHHHHHHH-----hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc
Confidence            677778886666 5665542       3334444444     789999999999999999999887 9999999999999


Q ss_pred             ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 021175          199 FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR-EGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALK  277 (316)
Q Consensus       199 ~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  277 (316)
                      ++++|.+.|+++++    ..|....++...+..... .|++++|.+.|+++++.+|+++.++.++|..+...|++++|+.
T Consensus       149 ~~~~A~~~~~~a~~----~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~  224 (308)
T 2ond_A          149 GIKSGRMIFKKARE----DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV  224 (308)
T ss_dssp             CHHHHHHHHHHHHT----STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999    678777888777666544 7999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc---CCC-ChhHHHHHHHHHhhCCCCCCC
Q 021175          278 AFEEVLLF---DPN-NKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       278 ~~~~al~~---~p~-~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      .|+++++.   +|+ ....+..++.++...|+.++|
T Consensus       225 ~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a  260 (308)
T 2ond_A          225 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI  260 (308)
T ss_dssp             HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999995   553 677888888888888876543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.70  E-value=2.1e-15  Score=131.56  Aligned_cols=132  Identities=11%  Similarity=0.086  Sum_probs=117.5

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELG--AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~  238 (316)
                      ...|++++|++.++++++.+|+........+  ..+...|++++|+..|+++++    ..|+++.+++++|.++..+|++
T Consensus       141 ~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~----~~p~~~~~~~~la~~~~~~g~~  216 (291)
T 3mkr_A          141 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD----KCSPTLLLLNGQAACHMAQGRW  216 (291)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH----HSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcCCH
Confidence            3899999999999999999999865544433  334456899999999999999    5899999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCChhHHHHH
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS-ALKAFEEVLLFDPNNKVARPRR  296 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~p~~~~a~~~l  296 (316)
                      ++|++.|+++++++|+++.+++++|.++...|+.++ +.++++++++++|+++.+....
T Consensus       217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~  275 (291)
T 3mkr_A          217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR  275 (291)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            999999999999999999999999999999999976 5689999999999999876543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.70  E-value=1.6e-17  Score=130.66  Aligned_cols=101  Identities=11%  Similarity=0.078  Sum_probs=95.6

Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175          205 KYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL  284 (316)
Q Consensus       205 ~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  284 (316)
                      ..++++++    ++|+++.+++++|.++...|++++|++.|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++
T Consensus        23 ~~l~~al~----l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           23 ATLKDINA----IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             CCTGGGCC----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHhC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            33456666    79999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          285 FDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       285 ~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++|+++.++.+++.++..+|++++|
T Consensus        99 l~P~~~~~~~~lg~~~~~lg~~~eA  123 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQLRLKAPLKA  123 (151)
T ss_dssp             HSSSCCHHHHHHHHHHHHTTCHHHH
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999998765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.69  E-value=3.9e-16  Score=135.55  Aligned_cols=189  Identities=17%  Similarity=0.150  Sum_probs=149.3

Q ss_pred             hccchHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc--------CCCCHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQ-LSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRS--------GDASATE  186 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~  186 (316)
                      ..++.+.|...++.+........ ........++..++..+.     ..|++++|+..++++++.        .|....+
T Consensus        39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  113 (311)
T 3nf1_A           39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR-----DQNKYKDAANLLNDALAIREKTLGKDHPAVAAT  113 (311)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence            45566677777764444322111 001111234445555555     899999999999999987        3566889


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhcC----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Q 021175          187 YFELGAVMLRRKFYPAATKYLLQAIEKWD----GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL--------QPG  254 (316)
Q Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~----~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~  254 (316)
                      +.++|.++...|++++|+++++++++...    ...|....++.++|.++...|++++|+++++++++.        +|.
T Consensus       114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  193 (311)
T 3nf1_A          114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN  193 (311)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999998641    135888999999999999999999999999999998        677


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------------------------------------
Q 021175          255 YVTAWNNLGDAYEKKKDLKSALKAFEEVLLF-------------------------------------------------  285 (316)
Q Consensus       255 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------  285 (316)
                      ...++..+|.+|...|++++|..+++++++.                                                 
T Consensus       194 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  273 (311)
T 3nf1_A          194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD  273 (311)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC
Confidence            7889999999999999999999999999974                                                 


Q ss_pred             CCCChhHHHHHHHHHhhCCCCCCC
Q 021175          286 DPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       286 ~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +|....++..++.++...|++++|
T Consensus       274 ~~~~~~~~~~la~~~~~~g~~~~A  297 (311)
T 3nf1_A          274 SPTVTTTLKNLGALYRRQGKFEAA  297 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CchHHHHHHHHHHHHHHCCCHHHH
Confidence            455667788888888888887655

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.69  E-value=1.2e-15  Score=120.22  Aligned_cols=121  Identities=21%  Similarity=0.210  Sum_probs=112.9

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|+..++++++.+|+++.++.++|.++...|++++|+++++++++    .+|.++.+++++|.++...|++++
T Consensus        24 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~a~~~~~~~~~~~   99 (166)
T 1a17_A           24 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKYIKGYYRRAASNMALGKFRA   99 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHhccHHH
Confidence            3899999999999999999999999999999999999999999999999999    589999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhc
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDA--YEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~  285 (316)
                      |++.++++++.+|++..++..++.+  +...|++++|+..++++..+
T Consensus       100 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999999999999999888555554  88899999999999987654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.69  E-value=2.6e-15  Score=125.64  Aligned_cols=164  Identities=12%  Similarity=0.008  Sum_probs=133.0

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHH---HHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASAT---EYFELGA  192 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~  192 (316)
                      ..++.+.|...|+.+....|......    .+++.+|..+.     ..|++++|+..|+++++.+|+++.   +++.+|.
T Consensus        16 ~~g~~~~A~~~~~~~~~~~p~~~~~~----~a~~~lg~~~~-----~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~   86 (225)
T 2yhc_A           16 QDGNWRQAITQLEALDNRYPFGPYSQ----QVQLDLIYAYY-----KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL   86 (225)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTSTTHH----HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence            45667777778886665555433211    23444444444     899999999999999999998764   8999999


Q ss_pred             HHHH------------------cCChHHHHHHHHHHHHhcCCCCccHHHHH-----------------HHHHHHHHHcCC
Q 021175          193 VMLR------------------RKFYPAATKYLLQAIEKWDGDDQDLAQVY-----------------NALGVSYVREGK  237 (316)
Q Consensus       193 ~~~~------------------~g~~~~A~~~~~~al~~~~~~~p~~~~~~-----------------~~lg~~~~~~g~  237 (316)
                      ++..                  .|++++|+..|+++++    ..|++..+.                 ..+|.+|...|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~  162 (225)
T 2yhc_A           87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR----GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA  162 (225)
T ss_dssp             HHHHHHC--------------CCHHHHHHHHHHHHHHT----TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH----HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            9876                  5799999999999999    456544332                 678999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175          238 LDKGISQFETAVKLQPGYV---TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  292 (316)
                      +++|+..|+++++.+|+++   .+++.+|.+|.++|++++|++.++++....|++.+-
T Consensus       163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~  220 (225)
T 2yhc_A          163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH  220 (225)
T ss_dssp             HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred             HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence            9999999999999999985   789999999999999999999999999999987653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.67  E-value=1.6e-15  Score=134.94  Aligned_cols=143  Identities=16%  Similarity=0.148  Sum_probs=131.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH---------------HHHHHH
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL---------------AQVYNA  227 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~---------------~~~~~~  227 (316)
                      .+++++|++.++++++.+|+.+.++.++|.++...|++++|+.+|+++++.    .|.+               ..++++
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~n  201 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW----LEYESSFSNEEAQKAQALRLASHLN  201 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----TTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----hhccccCChHHHHHHHHHHHHHHHH
Confidence            445666777777777888889999999999999999999999999999994    6665               799999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCC
Q 021175          228 LGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK  307 (316)
Q Consensus       228 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~  307 (316)
                      +|.++..+|++++|++.|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+|+++
T Consensus       202 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  281 (336)
T 1p5q_A          202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  281 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             CC
Q 021175          308 GV  309 (316)
Q Consensus       308 ~A  309 (316)
                      ++
T Consensus       282 ~a  283 (336)
T 1p5q_A          282 AR  283 (336)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.67  E-value=1.2e-15  Score=115.61  Aligned_cols=118  Identities=18%  Similarity=0.155  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHH
Q 021175          185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLA---QVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTA  258 (316)
Q Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~  258 (316)
                      .+++.+|..+...|++++|++.|+++++.    .|+++   .+++.+|.++...|++++|++.|+++++.+|++   +.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   78 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLEL----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGG   78 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHH
Confidence            35788999999999999999999999995    55554   899999999999999999999999999999999   899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          259 WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       259 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      ++.+|.++..+|++++|+..|+++++..|+++.+......+....++.
T Consensus        79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~~  126 (129)
T 2xev_A           79 LLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLGQ  126 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999998888877777665543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.67  E-value=3.2e-14  Score=122.08  Aligned_cols=167  Identities=15%  Similarity=0.174  Sum_probs=141.7

Q ss_pred             ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 021175          117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLV----RRELDLSAKELQEQVRSGDASATEYFELGA  192 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  192 (316)
                      .++.+.|...|+.+....  ..       .++..+|..+.     .    .+++++|++.++++++.+  ++.+++++|.
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~-------~a~~~lg~~~~-----~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~  118 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YS-------NGCHLLGNLYY-----SGQGVSQNTNKALQYYSKACDLK--YAEGCASLGG  118 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CH-------HHHHHHHHHHH-----HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC--CH-------HHHHHHHHHHh-----CCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHH
Confidence            567777777887544432  21       24444555554     6    899999999999999874  8999999999


Q ss_pred             HHHH----cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 021175          193 VMLR----RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR----EGKLDKGISQFETAVKLQPGYVTAWNNLGD  264 (316)
Q Consensus       193 ~~~~----~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  264 (316)
                      ++..    .+++++|+++|+++++    ..  ++.+++++|.+|..    .+++++|+++|+++++.  +++.+++++|.
T Consensus       119 ~~~~~~~~~~~~~~A~~~~~~a~~----~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~  190 (273)
T 1ouv_A          119 IYHDGKVVTRDFKKAVEYFTKACD----LN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGN  190 (273)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHH----TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHh----cC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence            9999    9999999999999999    34  56789999999999    99999999999999987  46899999999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh----CCCCCCC
Q 021175          265 AYEK----KKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR----VPLYKGV  309 (316)
Q Consensus       265 ~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~----~~~~~~A  309 (316)
                      +|..    .+++++|+.+|+++++.+|  +.++..++.++..    .+++++|
T Consensus       191 ~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A  241 (273)
T 1ouv_A          191 MYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQA  241 (273)
T ss_dssp             HHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHH
Confidence            9999    9999999999999999866  8899999999998    8887765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=2.8e-15  Score=113.38  Aligned_cols=106  Identities=13%  Similarity=0.165  Sum_probs=100.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      +...|++++|+..|+++++.+|+++.++.++|.++...|++++|++.++++++    .+|+++.+++++|.++...|+++
T Consensus        14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~~~   89 (126)
T 3upv_A           14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE----KDPNFVRAYIRKATAQIAVKEYA   89 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHhCHH
Confidence            34899999999999999999999999999999999999999999999999999    69999999999999999999999


Q ss_pred             HHHHHHHHHHHhC------CCcHHHHHHHHHHHHHc
Q 021175          240 KGISQFETAVKLQ------PGYVTAWNNLGDAYEKK  269 (316)
Q Consensus       240 ~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~  269 (316)
                      +|++.|+++++++      |++..++..++.+..+.
T Consensus        90 ~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           90 SALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            9999999999999      99999999988876553

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.66  E-value=2e-14  Score=123.31  Aligned_cols=168  Identities=18%  Similarity=0.223  Sum_probs=142.5

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLV----RRELDLSAKELQEQVRSGDASATEYFELG  191 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg  191 (316)
                      ..++.++|...|+.+..  +...       .++..+|..+.     .    .+++++|+..|+++++.+  ++.+++++|
T Consensus        18 ~~~~~~~A~~~~~~a~~--~~~~-------~a~~~lg~~~~-----~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg   81 (273)
T 1ouv_A           18 KEKDFTQAKKYFEKACD--LKEN-------SGCFNLGVLYY-----QGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   81 (273)
T ss_dssp             HTTCHHHHHHHHHHHHH--TTCH-------HHHHHHHHHHH-----HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHH-----cCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence            34577777778874443  3332       23444555554     6    899999999999999986  799999999


Q ss_pred             HHHHH----cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175          192 AVMLR----RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR----EGKLDKGISQFETAVKLQPGYVTAWNNLG  263 (316)
Q Consensus       192 ~~~~~----~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg  263 (316)
                      .++..    .+++++|+++|+++++    .  +++.+++++|.+|..    .+++++|+++|+++++.+  ++.+++++|
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~----~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg  153 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACD----L--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG  153 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHH----T--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHH----c--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence            99999    9999999999999999    3  378899999999999    999999999999999976  688999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh----CCCCCCC
Q 021175          264 DAYEK----KKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR----VPLYKGV  309 (316)
Q Consensus       264 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~----~~~~~~A  309 (316)
                      .+|..    .+++++|+.+|+++++.  +++.++..++.++..    .+++++|
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A  205 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEA  205 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence            99999    99999999999999987  467999999999998    7776544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.66  E-value=8.4e-16  Score=121.20  Aligned_cols=121  Identities=20%  Similarity=0.282  Sum_probs=110.2

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL  262 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  262 (316)
                      .+..+..+|..+...|++++|+..|+++++    ..|.+..++.++|.++...|++++|++.++++++.+|+++.+++++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   87 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   87 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            356789999999999999999999999999    5899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH--HhhCCCCC
Q 021175          263 GDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL--KDRVPLYK  307 (316)
Q Consensus       263 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l--~~~~~~~~  307 (316)
                      |.++...|++++|+.+|+++++++|++..++..++..  +...|+++
T Consensus        88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~  134 (166)
T 1a17_A           88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE  134 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888555444  44445544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.66  E-value=2.3e-15  Score=135.82  Aligned_cols=185  Identities=10%  Similarity=0.009  Sum_probs=142.6

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCC-------CHHHH
Q 021175          115 ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDA-------SATEY  187 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~  187 (316)
                      ...++.+.|...++.+........... ....++..+|..+.     ..|++++|+..++++++..+.       .+.++
T Consensus       114 ~~~g~~~~A~~~~~~al~~~~~~~~~~-~~a~~~~~lg~~~~-----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  187 (383)
T 3ulq_A          114 LDQREYLSAIKFFKKAESKLIFVKDRI-EKAEFFFKMSESYY-----YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH  187 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCHH-HHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCCCHH-HHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            355777888888875554422221111 12245556666665     899999999999999987443       35689


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCcHHHH
Q 021175          188 FELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKLDKGISQFETAVK-----LQ-PGYVTAW  259 (316)
Q Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~~~  259 (316)
                      .++|.++...|++++|+++++++++..+.  ..+..+.++.++|.+|..+|++++|+++++++++     .+ |..+.++
T Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  267 (383)
T 3ulq_A          188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY  267 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            99999999999999999999999986543  2344567999999999999999999999999999     56 8889999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCChhHHHHHHHHHhhCCC
Q 021175          260 NNLGDAYEKKKDLKSALKAFEEVLLFD-----PNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       260 ~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~l~~l~~~~~~  305 (316)
                      .++|.+|..+|++++|..++++++++.     |........++.++...|+
T Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~  318 (383)
T 3ulq_A          268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD  318 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999999999984     3333334456666665554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.66  E-value=4.8e-16  Score=140.31  Aligned_cols=151  Identities=15%  Similarity=0.136  Sum_probs=133.0

Q ss_pred             HHHHhhhHHHHHHHHHHHHHc---CC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---CccHHHHHHHHH
Q 021175          159 QVLVRRELDLSAKELQEQVRS---GD---ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD---DQDLAQVYNALG  229 (316)
Q Consensus       159 ~~~~~~~~~~A~~~~~~al~~---~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~p~~~~~~~~lg  229 (316)
                      .+...|++++|+..++++++.   .+   ..+.++.++|.++...|++++|+++++++++..+..   .+..+.++.++|
T Consensus       112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  191 (383)
T 3ulq_A          112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA  191 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            344899999999999999986   22   356899999999999999999999999999976542   355678999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cC-CCChhHHHHHH
Q 021175          230 VSYVREGKLDKGISQFETAVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLL-----FD-PNNKVARPRRD  297 (316)
Q Consensus       230 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~a~~~l~  297 (316)
                      .+|..+|++++|++++++++++.|..      ..++.++|.+|..+|++++|+.+++++++     .+ |....++.+++
T Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  271 (383)
T 3ulq_A          192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT  271 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence            99999999999999999999886533      46899999999999999999999999999     46 77888999999


Q ss_pred             HHHhhCCCCCCC
Q 021175          298 ALKDRVPLYKGV  309 (316)
Q Consensus       298 ~l~~~~~~~~~A  309 (316)
                      .++...|++++|
T Consensus       272 ~~~~~~g~~~~A  283 (383)
T 3ulq_A          272 QIHYKLGKIDKA  283 (383)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHCCCHHHH
Confidence            999999998765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.65  E-value=7.2e-16  Score=115.44  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=94.2

Q ss_pred             HcCChHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGD---DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDL  272 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  272 (316)
                      ..|++++|+.+|+++++    .   +|+++.++.++|.++..+|++++|++.|+++++.+|+++.+++++|.++..+|++
T Consensus         2 ~~g~~~~A~~~~~~al~----~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~   77 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIA----SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY   77 (117)
T ss_dssp             -----CCCHHHHHHHHS----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             CCCcHHHHHHHHHHHHH----cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH
Confidence            46889999999999999    5   5899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCC
Q 021175          273 KSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       273 ~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~  308 (316)
                      ++|+..++++++.+|+++........+....+.+++
T Consensus        78 ~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~  113 (117)
T 3k9i_A           78 EQGVELLLKIIAETSDDETIQSYKQAILFYADKLDE  113 (117)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888777777666666554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.65  E-value=9.6e-16  Score=115.56  Aligned_cols=120  Identities=18%  Similarity=0.189  Sum_probs=107.0

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------
Q 021175          182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY------  255 (316)
Q Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------  255 (316)
                      +.+..++.+|..+...|++++|+.+++++++    ..|.++.+++++|.++...|++++|++.++++++.+|++      
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   77 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence            3467789999999999999999999999999    588889999999999999999999999999999998877      


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          256 -VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       256 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                       ..+++++|.++...|++++|..+|+++++.+| ++.....++.+...+++.
T Consensus        78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence             88999999999999999999999999999998 588888888887766544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.65  E-value=8.1e-16  Score=112.80  Aligned_cols=108  Identities=14%  Similarity=0.168  Sum_probs=103.3

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cH
Q 021175          179 SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG--YV  256 (316)
Q Consensus       179 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~  256 (316)
                      .+|+++.++..+|.++...|++++|+.+++++++    ..|.+..++.++|.++...|++++|++.++++++.+|+  +.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   76 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQ----LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK   76 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence            3688889999999999999999999999999999    58889999999999999999999999999999999999  99


Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCh
Q 021175          257 TAWNNLGDAYEKK-KDLKSALKAFEEVLLFDPNNK  290 (316)
Q Consensus       257 ~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~  290 (316)
                      .+++++|.++... |++++|++++++++...|+++
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            9999999999999 999999999999999999864

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.64  E-value=8.4e-16  Score=133.39  Aligned_cols=158  Identities=17%  Similarity=0.201  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRS--------GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--  216 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--  216 (316)
                      ++..++..+.     ..|++++|+..++++++.        .|....++..+|.++...|++++|+++++++++....  
T Consensus        29 ~~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           29 TLHNLVIQYA-----SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             HHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            3444444444     899999999999999984        6677899999999999999999999999999986421  


Q ss_pred             --CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 021175          217 --DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF-  285 (316)
Q Consensus       217 --~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-  285 (316)
                        ..|....++.++|.++...|++++|++.+++++++.        |....++.++|.++...|++++|+.++++++++ 
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence              268889999999999999999999999999999884        556788999999999999999999999999998 


Q ss_pred             -------CCCChhHHHHHHHHHhhCCCCCCC
Q 021175          286 -------DPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       286 -------~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                             +|....++..++.++...|++++|
T Consensus       184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  214 (311)
T 3nf1_A          184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQA  214 (311)
T ss_dssp             HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence                   777788899999999999998765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.64  E-value=2.9e-15  Score=113.12  Aligned_cols=121  Identities=27%  Similarity=0.487  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 021175          185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGD  264 (316)
Q Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  264 (316)
                      .+++.+|.++...|++++|++.++++++    ..|.+..++..+|.++...|++++|++.++++++.+|++..+++.+|.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   77 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN   77 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHH----cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            5688999999999999999999999999    588889999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          265 AYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       265 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++...|++++|+..++++++..|++..++..++.++...|++++|
T Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  122 (136)
T 2fo7_A           78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA  122 (136)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH
Confidence            999999999999999999999999999999999999999988655

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.64  E-value=7.2e-15  Score=110.55  Aligned_cols=108  Identities=18%  Similarity=0.194  Sum_probs=104.2

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|+..++++++.+|+++.++..+|.++...|++++|+++++++++    ..|.++.+++.+|.++...|++++
T Consensus        23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   98 (131)
T 2vyi_A           23 MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC----IDPAYSKAYGRMGLALSSLNKHVE   98 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh----cCccCHHHHHHHHHHHHHhCCHHH
Confidence            3899999999999999999999999999999999999999999999999999    588999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDL  272 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  272 (316)
                      |++.++++++.+|++..++..+|.++...|++
T Consensus        99 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           99 AVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999998875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.64  E-value=3.6e-15  Score=112.89  Aligned_cols=106  Identities=12%  Similarity=0.132  Sum_probs=102.8

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++++|+..++++++.+|++..++.++|.++...|++++|+++++++++    ..|.++.+++++|.++...|++++|
T Consensus        28 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~~~~~~A  103 (133)
T 2lni_A           28 QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ----LEPTFIKGYTRKAAALEAMKDYTKA  103 (133)
T ss_dssp             HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHHhhHHHH
Confidence            899999999999999999999999999999999999999999999999999    5899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKD  271 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  271 (316)
                      ++.++++++.+|++..++..++.++..+|+
T Consensus       104 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          104 MDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999999999999999999999999998775

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.63  E-value=3.5e-16  Score=133.68  Aligned_cols=148  Identities=18%  Similarity=0.171  Sum_probs=131.4

Q ss_pred             HhhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC----CCCccHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRS--------GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD----GDDQDLAQVYNALG  229 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----~~~p~~~~~~~~lg  229 (316)
                      ..|++++|+..++++++.        .|..+.++..+|.++...|++++|+++++++++...    ..+|....++.++|
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            567778888888888773        356788999999999999999999999999998641    13688899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHH
Q 021175          230 VSYVREGKLDKGISQFETAVKL--------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF--------DPNNKVAR  293 (316)
Q Consensus       230 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~  293 (316)
                      .++...|++++|++.+++++++        +|....++.++|.++...|++++|+.++++++++        +|....++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999999998        4677899999999999999999999999999999        77778899


Q ss_pred             HHHHHHHhhCCCCCCC
Q 021175          294 PRRDALKDRVPLYKGV  309 (316)
Q Consensus       294 ~~l~~l~~~~~~~~~A  309 (316)
                      ..++.++...|++++|
T Consensus       173 ~~la~~~~~~g~~~~A  188 (283)
T 3edt_B          173 NNLASCYLKQGKYQDA  188 (283)
T ss_dssp             HHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHcCCHHHH
Confidence            9999999999998755

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.63  E-value=1.5e-15  Score=118.95  Aligned_cols=94  Identities=13%  Similarity=0.003  Sum_probs=90.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++++|+..|+++++.+|+++.+++++|.++...|++++|++.|+++++    .+|+++.+++++|.++...|++++|
T Consensus        33 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~lg~~~~~~g~~~~A  108 (148)
T 2vgx_A           33 QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV----MDIXEPRFPFHAAECLLQXGELAEA  108 (148)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHcCCHHHH
Confidence            899999999999999999999999999999999999999999999999999    6999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHH
Q 021175          242 ISQFETAVKLQPGYVTAW  259 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~  259 (316)
                      ++.|+++++++|+++...
T Consensus       109 ~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A          109 ESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             HHHHHHHHHHHTTCGGGH
T ss_pred             HHHHHHHHHHCcCCCcch
Confidence            999999999999876543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.63  E-value=2.3e-15  Score=116.73  Aligned_cols=103  Identities=17%  Similarity=0.043  Sum_probs=95.0

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|+..|++++..+|+++.++.++|.++...|++++|+.+|+++++    .+|+++.+++++|.++...|++++
T Consensus        29 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~  104 (142)
T 2xcb_A           29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL----MDINEPRFPFHAAECHLQLGDLDG  104 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred             HHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCcHHHHHHHHHHHHcCCHHH
Confidence            3899999999999999999999999999999999999999999999999999    699999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYE  267 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~  267 (316)
                      |++.|+++++++|+++........+..
T Consensus       105 A~~~~~~al~~~p~~~~~~~~~~~~~~  131 (142)
T 2xcb_A          105 AESGFYSARALAAAQPAHEALAARAGA  131 (142)
T ss_dssp             HHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence            999999999999988766555444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.63  E-value=5.3e-15  Score=117.34  Aligned_cols=103  Identities=11%  Similarity=0.048  Sum_probs=97.5

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|+..|+++++.+|+++.+++++|.++...|++++|+.+|+++++    .+|++..+++++|.++..+|++++
T Consensus        22 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~   97 (164)
T 3sz7_A           22 MARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV----VDPKYSKAWSRLGLARFDMADYKG   97 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHccCHHH
Confidence            3899999999999999999999999999999999999999999999999999    699999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYE  267 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~  267 (316)
                      |++.|+++++++|++..+++..+....
T Consensus        98 A~~~~~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A           98 AKEAYEKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             HHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            999999999999999988777776543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.63  E-value=3e-15  Score=120.36  Aligned_cols=152  Identities=13%  Similarity=0.053  Sum_probs=127.2

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++.+.|...++.+....|...       .++..++..+.     ..|++++|+..++++++.+| ++..+..++.+..
T Consensus        18 ~~g~~~~A~~~~~~al~~~P~~~-------~a~~~la~~~~-----~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~   84 (176)
T 2r5s_A           18 QQGEHAQALNVIQTLSDELQSRG-------DVKLAKADCLL-----ETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL   84 (176)
T ss_dssp             HTTCHHHHHHHHHTSCHHHHTSH-------HHHHHHHHHHH-----HTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcH-------HHHHHHHHHHH-----HCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence            45667777778886666666655       34444455555     89999999999999999999 8877776665533


Q ss_pred             -HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCH
Q 021175          196 -RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY--VTAWNNLGDAYEKKKDL  272 (316)
Q Consensus       196 -~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~  272 (316)
                       ..++..+|++.++++++    .+|+++.+++++|.++...|++++|++.|+++++.+|+.  ..++.++|.++..+|+.
T Consensus        85 ~~~~~~~~a~~~~~~al~----~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELA----ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred             HhhcccchHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence             33455678999999999    699999999999999999999999999999999999976  66999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 021175          273 KSALKAFEEVLL  284 (316)
Q Consensus       273 ~~A~~~~~~al~  284 (316)
                      ++|...|++++.
T Consensus       161 ~~A~~~y~~al~  172 (176)
T 2r5s_A          161 NAIASKYRRQLY  172 (176)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            999999999875

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.62  E-value=1.2e-14  Score=130.89  Aligned_cols=168  Identities=17%  Similarity=0.053  Sum_probs=135.5

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCC-------CHHHH
Q 021175          115 ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDA-------SATEY  187 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~  187 (316)
                      ...++...|...++.+.......... .....++..+|..+.     ..|++++|+..++++++..+.       .+.++
T Consensus       112 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~a~~~~~lg~~y~-----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          112 FDQKEYVEAIGYYREAEKELPFVSDD-IEKAEFHFKVAEAYY-----HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCH-HHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHHHH-----HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            35677788888887655543332211 122245556666665     899999999999999986442       35689


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCcHHHHH
Q 021175          188 FELGAVMLRRKFYPAATKYLLQAIEKWDGD--DQDLAQVYNALGVSYVREGKLDKGISQFETAVK-----LQPGYVTAWN  260 (316)
Q Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~  260 (316)
                      .++|.++...|++++|+++++++++..+..  .+....++.++|.+|..+|++++|+++++++++     .+|..+.+++
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  265 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence            999999999999999999999999965432  234577899999999999999999999999999     7888899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175          261 NLGDAYEKKKDLKSALKAFEEVLLFDPN  288 (316)
Q Consensus       261 ~lg~~~~~~g~~~~A~~~~~~al~~~p~  288 (316)
                      ++|.++..+|++++|..++++++++.+.
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.62  E-value=7.3e-15  Score=120.23  Aligned_cols=119  Identities=17%  Similarity=0.202  Sum_probs=105.9

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASA----------------TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV  224 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~  224 (316)
                      ...|++++|+..|+++++..|+++                .++.++|.++...|++++|+.+++++++    .+|++..+
T Consensus        49 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~~~~  124 (198)
T 2fbn_A           49 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK----IDKNNVKA  124 (198)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCcccHHH
Confidence            389999999999999999999887                8999999999999999999999999999    69999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 021175          225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL-KAFEEVL  283 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al  283 (316)
                      ++++|.++..+|++++|++.|+++++++|++..++..++.++...|+.+++. ..+.+.+
T Consensus       125 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          125 LYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999998888777 4444443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.62  E-value=1.9e-15  Score=136.93  Aligned_cols=146  Identities=13%  Similarity=0.168  Sum_probs=66.7

Q ss_pred             HhhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHhcCC--
Q 021175          162 VRRELDLSAKELQEQVRS------GDASATEYFELGAVMLRRKF-----------------YPAATKYLLQAIEKWDG--  216 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~-----------------~~~A~~~~~~al~~~~~--  216 (316)
                      ..|++++|+..++++++.      .|....++.++|.++...|+                 +++|+++++++++..+.  
T Consensus       138 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~  217 (411)
T 4a1s_A          138 VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG  217 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence            445555555555554444      23334445555555555555                 44555554444443211  


Q ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 021175          217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV------TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN-  289 (316)
Q Consensus       217 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-  289 (316)
                      ..+....++.++|.++...|++++|++++++++++.|...      .++.++|.+|...|++++|+.++++++++.|+. 
T Consensus       218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  297 (411)
T 4a1s_A          218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG  297 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence            1223334444455555555555555555555544443221      244445555555555555555555544444422 


Q ss_pred             -----hhHHHHHHHHHhhCCCCC
Q 021175          290 -----KVARPRRDALKDRVPLYK  307 (316)
Q Consensus       290 -----~~a~~~l~~l~~~~~~~~  307 (316)
                           ..++..++.++...|+++
T Consensus       298 ~~~~~~~~~~~la~~~~~~g~~~  320 (411)
T 4a1s_A          298 EREVEAQSCYSLGNTYTLLHEFN  320 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHH
Confidence                 334444444444444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.62  E-value=1.6e-14  Score=119.89  Aligned_cols=142  Identities=15%  Similarity=0.098  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHhcCCCCccHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK----FYPAATKYLLQAIEKWDGDDQDLA  222 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~~p~~~  222 (316)
                      ++..+|..+.     ..+++++|+..|+++.+.  .++.+++++|.+|.. +    ++++|+++|+++++      +.++
T Consensus        20 a~~~lg~~~~-----~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~------~g~~   85 (212)
T 3rjv_A           20 AQYYLADTWV-----SSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE------AGSK   85 (212)
T ss_dssp             HHHHHHHHHH-----HHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH------TTCH
T ss_pred             HHHHHHHHHh-----cCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH------CCCH
Confidence            4444455554     688999999999998875  578999999999888 6    89999999999976      4678


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhH
Q 021175          223 QVYNALGVSYVR----EGKLDKGISQFETAVKLQP--GYVTAWNNLGDAYEK----KKDLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       223 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a  292 (316)
                      .+++++|.+|..    .+++++|+++|+++++..|  +++.++++||.+|..    .+++++|+.+|+++.+. |+++.+
T Consensus        86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a  164 (212)
T 3rjv_A           86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYA  164 (212)
T ss_dssp             HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred             HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHH
Confidence            899999999987    8899999999999999888  458999999999998    88999999999999988 777889


Q ss_pred             HHHHHHHHhhC
Q 021175          293 RPRRDALKDRV  303 (316)
Q Consensus       293 ~~~l~~l~~~~  303 (316)
                      ..+++.++...
T Consensus       165 ~~~Lg~~y~~g  175 (212)
T 3rjv_A          165 EYWAGMMFQQG  175 (212)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHcC
Confidence            99999988664

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.62  E-value=3.9e-15  Score=134.10  Aligned_cols=188  Identities=12%  Similarity=0.054  Sum_probs=120.0

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------------HHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRE--------------------LDLSAKELQE  175 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~  175 (316)
                      ..++.+.|...++.+....+...... ....++..+|..+.     ..|+                    +++|+..+++
T Consensus        99 ~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~-----~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  172 (406)
T 3sf4_A           99 VLGNFDEAIVCCQRHLDISRELNDKV-GEARALYNLGNVYH-----AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE  172 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHH-----HHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHH-----HcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence            45566666667665544443332111 11234444444444     6666                    7777777777


Q ss_pred             HHHc------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          176 QVRS------GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD--DQDLAQVYNALGVSYVREGKLDKGISQFET  247 (316)
Q Consensus       176 al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  247 (316)
                      +++.      .|....++.++|.++...|++++|+++++++++..+..  .+....++.++|.++...|++++|++++++
T Consensus       173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  252 (406)
T 3sf4_A          173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK  252 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            7664      23345577777777777777777777777777753321  122344777777777777777777777777


Q ss_pred             HHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHhhCCCCCCC
Q 021175          248 AVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN------KVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       248 al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++++.|..      ..++.++|.+|...|++++|..++++++++.+..      ..++..++.++...|++++|
T Consensus       253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            77766544      5677777777777777777777777777765443      44666777777777776544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.62  E-value=6.4e-15  Score=132.81  Aligned_cols=150  Identities=13%  Similarity=0.079  Sum_probs=132.3

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---CccHHHHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGD------ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD---DQDLAQVYNALGV  230 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~p~~~~~~~~lg~  230 (316)
                      ....|++++|+..++++++..+      ..+.+++++|.++...|++++|+.+++++++..+..   .+..+.++.++|.
T Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  190 (378)
T 3q15_A          111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG  190 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence            4489999999999999998633      346799999999999999999999999999976542   2356889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCChhHHHHHHHH
Q 021175          231 SYVREGKLDKGISQFETAVKLQP------GYVTAWNNLGDAYEKKKDLKSALKAFEEVLL-----FDPNNKVARPRRDAL  299 (316)
Q Consensus       231 ~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~a~~~l~~l  299 (316)
                      +|...|++++|++++++++++.+      ....++.++|.+|..+|++++|+.+++++++     .+|....++..++.+
T Consensus       191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  270 (378)
T 3q15_A          191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT  270 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence            99999999999999999998743      1257899999999999999999999999999     788888999999999


Q ss_pred             HhhCCCCCCC
Q 021175          300 KDRVPLYKGV  309 (316)
Q Consensus       300 ~~~~~~~~~A  309 (316)
                      +...|++++|
T Consensus       271 ~~~~g~~~~A  280 (378)
T 3q15_A          271 LCKAGQTQKA  280 (378)
T ss_dssp             HHHTTCHHHH
T ss_pred             HHHCCCHHHH
Confidence            9999998765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.62  E-value=6e-15  Score=136.26  Aligned_cols=178  Identities=13%  Similarity=0.073  Sum_probs=90.4

Q ss_pred             cchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Q 021175          118 SENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLR-  196 (316)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-  196 (316)
                      ++.+.|...|+.+...+|...........+...         ....++.++|++.++++++.+|+++.++.++|..+.. 
T Consensus       152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~---------l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~  222 (472)
T 4g1t_A          152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYR---------LDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM  222 (472)
T ss_dssp             THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---------HHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------hcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence            356677888887777766655333222111111         1123444455555555555555555555555544333 


Q ss_pred             ---cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----
Q 021175          197 ---RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK----  269 (316)
Q Consensus       197 ---~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----  269 (316)
                         .|++++|+++++++++    .+|....++.++|.+|...|++++|++.++++++.+|+++.++.++|.+|...    
T Consensus       223 ~~~~~~~~~a~~~~~~al~----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~  298 (472)
T 4g1t_A          223 REEGEEEGEGEKLVEEALE----KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQV  298 (472)
T ss_dssp             C------CHHHHHHHHHHH----HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHh
Confidence               2344555555555555    35555555555555555555555555555555555555555555555554322    


Q ss_pred             ---------------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCC
Q 021175          270 ---------------KDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       270 ---------------g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~  308 (316)
                                     +.+++|+..++++++++|++..++..++.++...|++++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~  352 (472)
T 4g1t_A          299 MNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE  352 (472)
T ss_dssp             HHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence                           123445555555555555555555555555555555443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.62  E-value=1.6e-14  Score=133.42  Aligned_cols=181  Identities=13%  Similarity=0.037  Sum_probs=140.8

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 021175          115 ANASENVQMDAVYEIGELFELGIQLSY-LLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAV  193 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  193 (316)
                      ...++.+.|...++.+..+.+...... .....++...|..+.   ....+++++|++.|+++++.+|++++++..+|.+
T Consensus       105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~  181 (472)
T 4g1t_A          105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRL---KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA  181 (472)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHH---HHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            456777777778876555443321000 000012222222222   1245789999999999999999999999999988


Q ss_pred             HHH---cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175          194 MLR---RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR----EGKLDKGISQFETAVKLQPGYVTAWNNLGDAY  266 (316)
Q Consensus       194 ~~~---~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  266 (316)
                      +..   .+++++|++.++++++    ++|+++.++.++|..+..    .|++++|++.++++++.+|++..++.++|.+|
T Consensus       182 ~~~l~~~~~~~~al~~~~~al~----l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~  257 (472)
T 4g1t_A          182 SYRLDNWPPSQNAIDPLRQAIR----LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY  257 (472)
T ss_dssp             HHHHHHSCCCCCTHHHHHHHHH----HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHhcCchHHHHHHHHHHHHhh----cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            654   5788999999999999    699999999999877665    46788999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          267 EKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       267 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      ...|++++|+..++++++.+|++..++..++.++..
T Consensus       258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~  293 (472)
T 4g1t_A          258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA  293 (472)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.61  E-value=2.5e-15  Score=135.49  Aligned_cols=125  Identities=12%  Similarity=0.204  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC------------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 021175          185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDG------------DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ  252 (316)
Q Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  252 (316)
                      ..+..+|..+...|++++|++.|+++++..+.            .+|.+..+++++|.+|..+|++++|+++++++++++
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            45777888888888888888888888873221            367788899999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          253 PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       253 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888887776544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.61  E-value=6.6e-16  Score=143.94  Aligned_cols=127  Identities=20%  Similarity=0.219  Sum_probs=116.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++++|++.|+++++.+|+++.++.++|.++...|++++|++.++++++    .+|+++.+++++|.+|..+|++++|
T Consensus        18 ~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           18 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            789999999999999999999999999999999999999999999999999    7999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCChhH
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDA--YEKKKDLKSALKAFE-----------EVLLFDPNNKVA  292 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~~a  292 (316)
                      ++.|+++++++|++..++.+++.+  +..+|++++|++.++           ++++++|+...+
T Consensus        94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~  157 (477)
T 1wao_1           94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP  157 (477)
T ss_dssp             HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence            999999999999999999999998  889999999999999           888888875433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.61  E-value=1.2e-15  Score=119.23  Aligned_cols=110  Identities=16%  Similarity=0.214  Sum_probs=63.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      +.+.+++|++.++++++.+|+++++++++|.++...++++.+.+..                            +.+++|
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al----------------------------~~~~eA   65 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK----------------------------QMIQEA   65 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH----------------------------HHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH----------------------------hHHHHH
Confidence            5667777777777777777777777777777777777654111100                            013355


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKK-----------KDLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      +..|++|++++|++.++++++|.+|..+           |++++|+.+|+++++++|++...+..+..+
T Consensus        66 i~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           66 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5555555555555555555555555444           255556666666666666555555554433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.61  E-value=8.2e-15  Score=131.94  Aligned_cols=158  Identities=16%  Similarity=0.120  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--
Q 021175          146 LGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASA------TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD--  217 (316)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--  217 (316)
                      ..+..+|..+.     ..|++++|+..++++++..|...      .++.++|.++...|++++|+.+++++++..+..  
T Consensus       188 ~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  262 (406)
T 3sf4_A          188 RAFGNLGNTHY-----LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD  262 (406)
T ss_dssp             HHHHHHHHHHH-----HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHH-----HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence            34555555555     89999999999999998766443      489999999999999999999999999864321  


Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q 021175          218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN---  288 (316)
Q Consensus       218 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---  288 (316)
                      .+....++.++|.++...|++++|++++++++++.+..      ..++..+|.+|...|++++|..++++++++.+.   
T Consensus       263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  342 (406)
T 3sf4_A          263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD  342 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            22337889999999999999999999999999986543      678999999999999999999999999998443   


Q ss_pred             ---ChhHHHHHHHHHhhCCCCCC
Q 021175          289 ---NKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       289 ---~~~a~~~l~~l~~~~~~~~~  308 (316)
                         ...++..++.++...|+...
T Consensus       343 ~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          343 KSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CcchhHHHHHHHHHHHHhhHhHH
Confidence               36778889999999988743

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.61  E-value=1.5e-14  Score=125.92  Aligned_cols=150  Identities=13%  Similarity=0.098  Sum_probs=127.7

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASA------TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD--DQDLAQVYNALGVS  231 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~p~~~~~~~~lg~~  231 (316)
                      +...|++++|++.++++++..+...      ..++.+|..+...|++++|+++++++++.....  ......+++++|.+
T Consensus        85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~  164 (293)
T 2qfc_A           85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI  164 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            4489999999999999999887654      356788999999999999999999999854321  12346799999999


Q ss_pred             HHHcCCHHHHHHHHHHHH---HhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHH
Q 021175          232 YVREGKLDKGISQFETAV---KLQPGY----VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN------NKVARPRRDA  298 (316)
Q Consensus       232 ~~~~g~~~~A~~~~~~al---~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~  298 (316)
                      |..+|++++|+++|++++   +..|++    ..+++++|.+|..+|++++|+.++++++++.++      ...++.++|.
T Consensus       165 y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~  244 (293)
T 2qfc_A          165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE  244 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            999999999999999999   556664    268999999999999999999999999988643      2678899999


Q ss_pred             HHhhCCCCCCC
Q 021175          299 LKDRVPLYKGV  309 (316)
Q Consensus       299 l~~~~~~~~~A  309 (316)
                      ++..+|++++|
T Consensus       245 ~y~~~g~~~~A  255 (293)
T 2qfc_A          245 CLRKLEYEEAE  255 (293)
T ss_dssp             HHHHTTCCHHH
T ss_pred             HHHHcCCcHHH
Confidence            99999998765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.61  E-value=1.9e-14  Score=109.51  Aligned_cols=107  Identities=11%  Similarity=0.163  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC---ccHHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD---QDLAQ  223 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---p~~~~  223 (316)
                      ++..+|..+.     ..|++++|++.|+++++.+|+++.++.++|.++...|++++|++.+++++++.+...   +..+.
T Consensus        10 a~~~lG~~~~-----~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A           10 AEKDLGNAAY-----KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            4444555555     999999999999999999999999999999999999999999999999999533211   12357


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 021175          224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAW  259 (316)
Q Consensus       224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  259 (316)
                      ++.++|.++..+|++++|++.|+++++.+|+ ++..
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~  119 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV  119 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence            8999999999999999999999999999886 4433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.61  E-value=9.9e-15  Score=126.92  Aligned_cols=154  Identities=6%  Similarity=-0.022  Sum_probs=137.9

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 021175          115 ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVM  194 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  194 (316)
                      ...++.+.|...|+.+...+|....       ++..++..+.     ..|++++|+..+++++..+|+........+..+
T Consensus       128 ~~~g~~~~A~~~~~~al~~~P~~~~-------a~~~la~~~~-----~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l  195 (287)
T 3qou_A          128 MQESNYTDALPLLXDAWQLSNQNGE-------IGLLLAETLI-----ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL  195 (287)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTTSCHH-------HHHHHHHHHH-----HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcchh-------HHHHHHHHHH-----HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence            4677888888899877777777653       3444444454     899999999999999999998888888888889


Q ss_pred             HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCH
Q 021175          195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY--VTAWNNLGDAYEKKKDL  272 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~  272 (316)
                      ...++.++|++.++++++    .+|+++.+++++|.++...|++++|++.|+++++.+|++  ..++.++|.++...|+.
T Consensus       196 ~~~~~~~~a~~~l~~al~----~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          196 LXQAADTPEIQQLQQQVA----ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHTSCHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HhhcccCccHHHHHHHHh----cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            999999999999999999    699999999999999999999999999999999999998  89999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 021175          273 KSALKAFEEVLL  284 (316)
Q Consensus       273 ~~A~~~~~~al~  284 (316)
                      ++|...|++++.
T Consensus       272 ~~a~~~~r~al~  283 (287)
T 3qou_A          272 DALASXYRRQLY  283 (287)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            999999999875

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.60  E-value=4.5e-15  Score=134.50  Aligned_cols=186  Identities=15%  Similarity=0.101  Sum_probs=152.8

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc------CCCCHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRS------GDASATEYFE  189 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~  189 (316)
                      ..++...|...++.+....+....   ....++..+|..+.     ..|++++|+..++++++.      .|....++..
T Consensus        60 ~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~lg~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  131 (411)
T 4a1s_A           60 NAGDCRAGVAFFQAAIQAGTEDLR---TLSAIYSQLGNAYF-----YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN  131 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHH---HHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHhcccChh---HHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence            556777888888866665554321   11124445555555     899999999999999987      5677889999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHH
Q 021175          190 LGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGK-----------------LDKGISQFETAVK  250 (316)
Q Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~-----------------~~~A~~~~~~al~  250 (316)
                      +|.++...|++++|+++++++++..+.  ..|....++.++|.+|...|+                 +++|+++++++++
T Consensus       132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~  211 (411)
T 4a1s_A          132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK  211 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999995332  256778899999999999999                 9999999999998


Q ss_pred             hC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHhhCCCCCCC
Q 021175          251 LQ------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV------ARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       251 ~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~~l~~l~~~~~~~~~A  309 (316)
                      +.      +....++.++|.+|...|++++|+.++++++++.|+...      ++..++.++...|++++|
T Consensus       212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  282 (411)
T 4a1s_A          212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA  282 (411)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence            74      334678999999999999999999999999999887655      889999999999998755

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.60  E-value=4.7e-15  Score=128.61  Aligned_cols=135  Identities=14%  Similarity=0.085  Sum_probs=117.1

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|+..|+++++.+|+++.++.++|.++...|++++|++.++++++    .+|++..+++++|.++..+|++++
T Consensus        15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~   90 (281)
T 2c2l_A           15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE----LDGQSVKAHFFLGQCQLEMESYDE   90 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHH
Confidence            3899999999999999999999999999999999999999999999999999    799999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcH-----H--------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175          241 GISQFETAVKLQPGYV-----T--------------------------AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       241 A~~~~~~al~~~p~~~-----~--------------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  289 (316)
                      |++.|+++++++|++.     .                          +...++..  ..|++++|++.++++++.+|++
T Consensus        91 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~  168 (281)
T 2c2l_A           91 AIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDD  168 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCH
T ss_pred             HHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccch
Confidence            9999999999988651     1                          11222222  3688999999999999999988


Q ss_pred             hhHHHHHHHHHh
Q 021175          290 KVARPRRDALKD  301 (316)
Q Consensus       290 ~~a~~~l~~l~~  301 (316)
                      ......++.+..
T Consensus       169 ~~~~~~l~~~~~  180 (281)
T 2c2l_A          169 GHIRAQQACIEA  180 (281)
T ss_dssp             HHHTHHHHHHHH
T ss_pred             hhhhhHHHHHHH
Confidence            766666654443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.60  E-value=1.3e-14  Score=126.69  Aligned_cols=189  Identities=12%  Similarity=0.071  Sum_probs=146.9

Q ss_pred             hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------------HHHHHHHHH
Q 021175          115 ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRE--------------------LDLSAKELQ  174 (316)
Q Consensus       115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~  174 (316)
                      ...++.+.|...++.+....+....... ...++..++..+.     ..|+                    +++|++.++
T Consensus        94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~  167 (338)
T 3ro2_A           94 KVLGNFDEAIVCCQRHLDISRELNDKVG-EARALYNLGNVYH-----AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE  167 (338)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHH-----HHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHHH-----HcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence            3556777777777655444443321111 1234455555554     7788                    999999999


Q ss_pred             HHHHc------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175          175 EQVRS------GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKLDKGISQFE  246 (316)
Q Consensus       175 ~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  246 (316)
                      ++++.      .+....++.++|.++...|++++|+++++++++..+.  ..+....++.++|.++...|++++|++.++
T Consensus       168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  247 (338)
T 3ro2_A          168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK  247 (338)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            98875      3344678999999999999999999999999986432  123345689999999999999999999999


Q ss_pred             HHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHhhCCCCCCC
Q 021175          247 TAVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN------KVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       247 ~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +++++.|..      ..++..+|.++...|++++|..++++++++.|..      ..++..++.++...|++++|
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  322 (338)
T 3ro2_A          248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  322 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            999987655      7789999999999999999999999999986654      44788899999999988755

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.60  E-value=4.9e-15  Score=130.02  Aligned_cols=132  Identities=12%  Similarity=0.058  Sum_probs=102.2

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDA------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD--QDLAQVYNALGVS  231 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--p~~~~~~~~lg~~  231 (316)
                      +...|++++|+..|+++++..+.      ...++.++|.+|.. |++++|+++|+++++..+...  +....++.++|.+
T Consensus        86 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~  164 (307)
T 2ifu_A           86 LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL  164 (307)
T ss_dssp             HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence            33678888888888888876432      24678888888888 888888888888888644211  1236778888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 021175          232 YVREGKLDKGISQFETAVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR  293 (316)
Q Consensus       232 ~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  293 (316)
                      |..+|++++|+++|++++++.|++      ..++.++|.++..+|++++|+.+|++++ ++|+.....
T Consensus       165 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~  231 (307)
T 2ifu_A          165 LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSE  231 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCH
Confidence            888888888888888888876543      3477788888888888888888888888 888887764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.59  E-value=8.2e-15  Score=115.99  Aligned_cols=108  Identities=8%  Similarity=0.121  Sum_probs=99.3

Q ss_pred             HHhhhHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHH
Q 021175          161 LVRRELDLSAKELQEQVRS------------------GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLA  222 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~  222 (316)
                      +..|++++|+..|+++++.                  +|....++.++|.++...|++++|+..++++++    ++|+++
T Consensus        22 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~----~~p~~~   97 (162)
T 3rkv_A           22 FVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK----REETNE   97 (162)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTCH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCcch
Confidence            3899999999999999998                  777789999999999999999999999999999    699999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCH
Q 021175          223 QVYNALGVSYVREGKLDKGISQFETAVKLQPGYV-TAWNNLGDAYEKKKDL  272 (316)
Q Consensus       223 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~  272 (316)
                      .+++++|.++..+|++++|++.|+++++++|++. .+...++.+....++.
T Consensus        98 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A           98 KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998 6777888777655443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.59  E-value=3.1e-14  Score=123.90  Aligned_cols=165  Identities=8%  Similarity=0.041  Sum_probs=126.0

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCC------HHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDAS------ATEYFE  189 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  189 (316)
                      ..++.+.+...++.+....+..+... .....+..++..+.     ..+++++|+..++++++..+..      ..++.+
T Consensus        87 ~~~~y~~a~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~-----~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQ-QFLQWQYYVAAYVL-----KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCCCHHHH-HHHHHHHHHHHHHT-----TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhccccCChHHH-HHHHHHHHHHHHHH-----cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            45666777777765444333222211 11112223444443     6789999999999999965432      447999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHH
Q 021175          190 LGAVMLRRKFYPAATKYLLQAIEKWDG---DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY------VTAWN  260 (316)
Q Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~  260 (316)
                      +|.+|...|++++|+.+|+++++....   ..+....+++++|.+|..+|++++|++++++++++.+..      +.+++
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999999999975432   345667799999999999999999999999999886443      88999


Q ss_pred             HHHHHHHHcC-CHHHHHHHHHHHHhcC
Q 021175          261 NLGDAYEKKK-DLKSALKAFEEVLLFD  286 (316)
Q Consensus       261 ~lg~~~~~~g-~~~~A~~~~~~al~~~  286 (316)
                      ++|.+|..+| ++++|+++|++++.+.
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            9999999999 5799999999999864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.59  E-value=7.3e-14  Score=104.05  Aligned_cols=106  Identities=25%  Similarity=0.449  Sum_probs=101.4

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|++.++++++.+|++..++..+|.++...|++++|+.+++++++    ..|.+..++.++|.++...|++++
T Consensus        20 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~   95 (125)
T 1na0_A           20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDE   95 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHH
Confidence            3899999999999999999999999999999999999999999999999999    588889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKK  270 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  270 (316)
                      |++.++++++.+|++..++..+|.++...|
T Consensus        96 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           96 AIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            999999999999999999999999987765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.59  E-value=1.6e-14  Score=113.05  Aligned_cols=103  Identities=13%  Similarity=0.123  Sum_probs=90.5

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCCccHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDA-------SAT-----EYFELGAVMLRRKFYPAATKYLLQAIEKWD---GDDQDLAQV  224 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~p~~~~~  224 (316)
                      ....|++++|+..|+++++.+|+       +..     +|.++|.++...|+|++|+.+++++++++.   +++|+++.+
T Consensus        21 l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A  100 (159)
T 2hr2_A           21 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL  100 (159)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHH
Confidence            33899999999999999999999       444     999999999999999999999999999210   029999999


Q ss_pred             H----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175          225 Y----NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL  262 (316)
Q Consensus       225 ~----~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  262 (316)
                      |    +++|.++..+|++++|++.|+++++++|++..+.-.+
T Consensus       101 ~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A          101 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             HHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            9    9999999999999999999999999999885544333

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.59  E-value=1.1e-14  Score=119.89  Aligned_cols=119  Identities=13%  Similarity=0.168  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG  263 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  263 (316)
                      ...++++|..+...|++++|++.|++++.      | ++.+++++|.++...|++++|++.|+++++++|+++.+++++|
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg   78 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQD------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRG   78 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSSS------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHcC------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            34578999999999999999999999853      2 5679999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHhhCCCCCCC
Q 021175          264 DAYEKKKDLKSALKAFEEVLLFDPNNK----------------VARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       264 ~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~a~~~l~~l~~~~~~~~~A  309 (316)
                      .+|...|++++|+..|+++++..|++.                .++.+++.++...|++++|
T Consensus        79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  140 (213)
T 1hh8_A           79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA  140 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence            999999999999999999999999877                9999999999999998755

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.58  E-value=8.1e-15  Score=127.94  Aligned_cols=188  Identities=14%  Similarity=0.113  Sum_probs=147.6

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCC------HHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDAS------ATEYFE  189 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  189 (316)
                      ..++...+...++.+........... ....++..++..+.     ..|++++|+..++++++..+..      ..++..
T Consensus        55 ~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  128 (338)
T 3ro2_A           55 YLHDYAKALEYHHHDLTLARTIGDQL-GEAKASGNLGNTLK-----VLGNFDEAIVCCQRHLDISRELNDKVGEARALYN  128 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHhhcccccH-HHHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            45666777777765444433222111 11234455555554     8999999999999999876543      458999


Q ss_pred             HHHHHHHcCC--------------------hHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          190 LGAVMLRRKF--------------------YPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKLDKGISQFET  247 (316)
Q Consensus       190 lg~~~~~~g~--------------------~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  247 (316)
                      +|.++...|+                    +++|+++++++++..+.  ..+....++.++|.++...|++++|++.+++
T Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  208 (338)
T 3ro2_A          129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ  208 (338)
T ss_dssp             HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999999                    99999999999885332  2456678999999999999999999999999


Q ss_pred             HHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHhhCCCCCCC
Q 021175          248 AVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN------KVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       248 al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++++.+..      ..++.++|.++...|++++|..++++++++.|+.      ..++..++.++...|++++|
T Consensus       209 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  282 (338)
T 3ro2_A          209 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA  282 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence            99886543      3489999999999999999999999999987765      67788999999999998765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.58  E-value=4.8e-15  Score=115.79  Aligned_cols=95  Identities=17%  Similarity=0.113  Sum_probs=53.3

Q ss_pred             HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 021175          128 EIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYL  207 (316)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  207 (316)
                      +++..+.......+... .+++..|..+.     ..++++.+....                        +.+++|+..|
T Consensus        20 eA~~~~~~Ai~l~P~~a-ea~~n~G~~l~-----~l~~~~~g~~al------------------------~~~~eAi~~l   69 (158)
T 1zu2_A           20 QIRQDAENTYKSNPLDA-DNLTRWGGVLL-----ELSQFHSISDAK------------------------QMIQEAITKF   69 (158)
T ss_dssp             HHHHHHHHHHHHCTTCH-HHHHHHHHHHH-----HHHHHSCHHHHH------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCH-HHHHHHHHHHH-----HhcccchhhhhH------------------------hHHHHHHHHH
Confidence            44455555555555444 56676777665     444443211111                        1244555555


Q ss_pred             HHHHHhcCCCCccHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCcH
Q 021175          208 LQAIEKWDGDDQDLAQVYNALGVSYVRE-----------GKLDKGISQFETAVKLQPGYV  256 (316)
Q Consensus       208 ~~al~~~~~~~p~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~  256 (316)
                      +++++    ++|++..+|+++|.+|..+           |++++|+++|++|++++|++.
T Consensus        70 e~AL~----ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           70 EEALL----IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHH----HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHH----hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            55555    3555555555555555444           578888888888888888864

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.58  E-value=1e-14  Score=109.99  Aligned_cols=94  Identities=19%  Similarity=0.120  Sum_probs=84.6

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      +...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++    .+|+++.+++++|.++...|+++
T Consensus        27 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~~~~~~la~~~~~~g~~~  102 (121)
T 1hxi_A           27 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM----LDPKDIAVHAALAVSHTNEHNAN  102 (121)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHH
Confidence            34899999999999999999999999999999999999999999999999999    69999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHH
Q 021175          240 KGISQFETAVKLQPGYVT  257 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~  257 (316)
                      +|++.++++++++|++..
T Consensus       103 ~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          103 AALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHhCcCCCC
Confidence            999999999999998754

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.58  E-value=8.1e-16  Score=143.32  Aligned_cols=125  Identities=19%  Similarity=0.264  Sum_probs=115.4

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL  262 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  262 (316)
                      .+.++.++|..+...|++++|+++|+++++    .+|+++.++.++|.++..+|++++|++.++++++++|+++.+++++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   80 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   80 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            345577888899999999999999999999    6999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH--HhhCCCCCCCCC
Q 021175          263 GDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL--KDRVPLYKGVPV  311 (316)
Q Consensus       263 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l--~~~~~~~~~A~~  311 (316)
                      |.+|..+|++++|++.|+++++++|++..++..++.+  +...|++++|..
T Consensus        81 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~  131 (477)
T 1wao_1           81 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  131 (477)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999988  677788877743

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.58  E-value=2.6e-14  Score=125.35  Aligned_cols=147  Identities=10%  Similarity=0.099  Sum_probs=115.9

Q ss_pred             HhhhHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-Cc-cHHHHHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDA------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD-DQ-DLAQVYNALGVSYV  233 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~p-~~~~~~~~lg~~~~  233 (316)
                      ..|++++|+..|.++++..+.      ...++.++|.+|...|++++|+.+|++++++.... ++ ....++.++|.+|.
T Consensus        48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~  127 (307)
T 2ifu_A           48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME  127 (307)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            678888888888888876542      38888899999998899999999999988865432 22 34678888898888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHh
Q 021175          234 REGKLDKGISQFETAVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK------VARPRRDALKD  301 (316)
Q Consensus       234 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~l~~l~~  301 (316)
                      . |++++|+++|++++++.|..      ..++.++|.+|..+|++++|+.+|++++++.|++.      .++..++.++.
T Consensus       128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~  206 (307)
T 2ifu_A          128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL  206 (307)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence            8 99999999999998887643      57788889999999999999999999888866543      36677777888


Q ss_pred             hCCCCCCC
Q 021175          302 RVPLYKGV  309 (316)
Q Consensus       302 ~~~~~~~A  309 (316)
                      ..|++++|
T Consensus       207 ~~g~~~~A  214 (307)
T 2ifu_A          207 HRADYVAA  214 (307)
T ss_dssp             HTTCHHHH
T ss_pred             HcCCHHHH
Confidence            77876544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.58  E-value=2.2e-15  Score=134.26  Aligned_cols=112  Identities=16%  Similarity=0.141  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLA-----------------QVYNALGVSYVREGKLDKGISQFET  247 (316)
Q Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~  247 (316)
                      ..+..+|..+...|+|++|+.+|+++++    ..|++.                 .+++++|.+|..+|++++|++.|++
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~----~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA----YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHH----HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3455555555555555555555555555    244443                 2555666666666666666666666


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 021175          248 AVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALK  300 (316)
Q Consensus       248 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~  300 (316)
                      +++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+.
T Consensus       256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~  308 (338)
T 2if4_A          256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA  308 (338)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666665555555553

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.58  E-value=9.6e-14  Score=102.42  Aligned_cols=103  Identities=12%  Similarity=0.115  Sum_probs=98.5

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      +...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++    ..|.++.++.++|.++...|+++
T Consensus        14 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~   89 (118)
T 1elw_A           14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD----LKPDWGKGYSRKAAALEFLNRFE   89 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHHhhHH
Confidence            34899999999999999999999999999999999999999999999999999    58999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAY  266 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~  266 (316)
                      +|++.++++++.+|++..++..++.+.
T Consensus        90 ~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           90 EAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            999999999999999999999998775

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.57  E-value=9.6e-14  Score=120.74  Aligned_cols=165  Identities=8%  Similarity=0.038  Sum_probs=123.6

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCC------HHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDAS------ATEYFE  189 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  189 (316)
                      ..++.+.+...+..+....+....... ........+..+.     ..|++++|+..++++++..+..      ..++.+
T Consensus        87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 2qfc_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQ-FLQWQYYVAAYVL-----KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCCCHHHHH-HHHHHHHHHHHHH-----TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHhccccCChhHHH-HHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            456666766676643333332221111 1122233344443     7889999999999999865543      669999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhcCCC--Ccc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHH
Q 021175          190 LGAVMLRRKFYPAATKYLLQAIEKWDGD--DQD-LAQVYNALGVSYVREGKLDKGISQFETAVKLQPG------YVTAWN  260 (316)
Q Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~--~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~  260 (316)
                      +|.+|...|++++|+.+|+++++.....  ++. ...+++++|.+|..+|++++|++++++++++.++      ...+++
T Consensus       161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~  240 (293)
T 2qfc_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            9999999999999999999999543221  222 3379999999999999999999999999987643      278999


Q ss_pred             HHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 021175          261 NLGDAYEKKKDLKSA-LKAFEEVLLFD  286 (316)
Q Consensus       261 ~lg~~~~~~g~~~~A-~~~~~~al~~~  286 (316)
                      ++|.+|..+|++++| ..++++++.+.
T Consensus       241 ~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          241 QRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            999999999999999 88899999764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=1.3e-13  Score=130.96  Aligned_cols=174  Identities=9%  Similarity=0.002  Sum_probs=151.8

Q ss_pred             chHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHcCCCCHHHHH
Q 021175          119 ENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRE----------LDLSAKELQEQVRSGDASATEYF  188 (316)
Q Consensus       119 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~  188 (316)
                      -.+.|...++.+..+.|.....+..-       +....     ..++          ++++++.++++++.+|++..+|+
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R-------~~~l~-----~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~  111 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCR-------REVLQ-----HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH  111 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHH-----HHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHH-------HHHHH-----hcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            34566778887777777766433332       22222     2333          89999999999999999999999


Q ss_pred             HHHHHHHHcC--ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 021175          189 ELGAVMLRRK--FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG-KLDKGISQFETAVKLQPGYVTAWNNLGDA  265 (316)
Q Consensus       189 ~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~  265 (316)
                      ..+.++...+  ++++++++++++++    .+|.+..+|.+.+.+....| .+++++++++++++.+|++..+|+++|.+
T Consensus       112 hR~w~l~~l~~~~~~~el~~~~k~l~----~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~l  187 (567)
T 1dce_A          112 HRCWLLSRLPEPNWARELELCARFLE----ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL  187 (567)
T ss_dssp             HHHHHHHTCSSCCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHh----hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHH
Confidence            9999999999  66999999999999    69999999999999999999 99999999999999999999999999999


Q ss_pred             HHHc--------------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCC
Q 021175          266 YEKK--------------KDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       266 ~~~~--------------g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~  308 (316)
                      +...              +++++|++++++++.++|++..+|..++.+....+.+++
T Consensus       188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence            9885              668999999999999999999999999999999888655

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.56  E-value=3.2e-14  Score=123.77  Aligned_cols=150  Identities=13%  Similarity=0.090  Sum_probs=124.5

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASAT------EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD--QDLAQVYNALGVS  231 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--p~~~~~~~~lg~~  231 (316)
                      ....+++++|+..++++++..+..+.      .+..+|..+...+++++|+++++++++......  .....++.++|.+
T Consensus        85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~  164 (293)
T 3u3w_A           85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI  164 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            44899999999999999998776654      344689999999999999999999999533211  1235689999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHH
Q 021175          232 YVREGKLDKGISQFETAVKLQ-------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN------KVARPRRDA  298 (316)
Q Consensus       232 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~  298 (316)
                      |..+|++++|+++|+++++..       +....+++++|.+|..+|++++|+.++++++++.++.      +.++.++|.
T Consensus       165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  244 (293)
T 3u3w_A          165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE  244 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            999999999999999999531       2235689999999999999999999999999986554      678999999


Q ss_pred             HHhhCCCC-CCC
Q 021175          299 LKDRVPLY-KGV  309 (316)
Q Consensus       299 l~~~~~~~-~~A  309 (316)
                      ++..+|+. ++|
T Consensus       245 ~~~~~g~~~~~A  256 (293)
T 3u3w_A          245 CLRKLEYEEAEI  256 (293)
T ss_dssp             HHHHTTCCHHHH
T ss_pred             HHHHhCCcHHHH
Confidence            99999953 544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.56  E-value=3e-14  Score=123.51  Aligned_cols=106  Identities=19%  Similarity=0.270  Sum_probs=102.0

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 021175          181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWN  260 (316)
Q Consensus       181 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  260 (316)
                      |+.+..+..+|..+...|++++|+..|+++++    .+|+++.+++++|.++..+|++++|++.++++++++|++..+++
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF   76 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            56788999999999999999999999999999    69999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 021175          261 NLGDAYEKKKDLKSALKAFEEVLLFDPNNK  290 (316)
Q Consensus       261 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  290 (316)
                      ++|.+|..+|++++|+..|+++++++|+++
T Consensus        77 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           77 FLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            999999999999999999999999999763

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.56  E-value=2.5e-14  Score=116.61  Aligned_cols=152  Identities=15%  Similarity=0.155  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--C
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVR------SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD--D  218 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~  218 (316)
                      ++..++..+.     ..|++++|+..++++++      ..|....++.++|.++...|++++|+++++++++.....  +
T Consensus        28 ~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  102 (203)
T 3gw4_A           28 ARFMLGYVYA-----FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED  102 (203)
T ss_dssp             HHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHH-----HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc
Confidence            4444444444     77888888888888877      344456778888888888888888888888888754321  2


Q ss_pred             c-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 021175          219 Q-DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG--Y----VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV  291 (316)
Q Consensus       219 p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  291 (316)
                      | ....++.++|.++...|++++|++.+++++++.+.  +    ..++.++|.++...|++++|..++++++++......
T Consensus       103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  182 (203)
T 3gw4_A          103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED  182 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence            2 45667788888888888888888888888765321  1    345677888888888888888888888887766555


Q ss_pred             HHHHHHHHHhhCC
Q 021175          292 ARPRRDALKDRVP  304 (316)
Q Consensus       292 a~~~l~~l~~~~~  304 (316)
                      .+ ..+.+...++
T Consensus       183 ~~-~~~~~~~~~~  194 (203)
T 3gw4_A          183 SE-AVNELMTRLN  194 (203)
T ss_dssp             HH-HHHHHHHHHH
T ss_pred             HH-HHHHHHhccc
Confidence            44 3344444333

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.56  E-value=4.3e-14  Score=107.97  Aligned_cols=107  Identities=18%  Similarity=0.084  Sum_probs=98.4

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|+..|+++++.+|+++.++.++|.++...|++++|+.+++++++    .+|+++.+++++|.++...|++++
T Consensus        20 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~   95 (137)
T 3q49_B           20 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE----LDGQSVKAHFFLGQCQLEMESYDE   95 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCchhHHHHHHHHHHHHHHhhHHH
Confidence            3899999999999999999999999999999999999999999999999999    699999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCC
Q 021175          241 GISQFETAVKLQPG-----YVTAWNNLGDAYEKKKD  271 (316)
Q Consensus       241 A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~  271 (316)
                      |++.|+++++++|+     +..+...+..+..+...
T Consensus        96 A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           96 AIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988     67777777766655433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.56  E-value=3.8e-14  Score=131.37  Aligned_cols=128  Identities=13%  Similarity=0.138  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 021175          146 LGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDAS---------------ATEYFELGAVMLRRKFYPAATKYLLQA  210 (316)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a  210 (316)
                      ..+...|..+.     ..|++++|+..|+++++.+|++               ..++.++|.++...|++++|+.+++++
T Consensus       269 ~~~~~~G~~~~-----~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          269 AIVKEKGTVYF-----KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34445555555     8999999999999999999988               699999999999999999999999999


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 021175          211 IEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALK-AFEEV  282 (316)
Q Consensus       211 l~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~a  282 (316)
                      ++    ++|+++.+++++|.+|..+|++++|+..|+++++++|++..++.+++.++..+|++++|.. .|++.
T Consensus       344 l~----~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          344 LG----LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             HH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             Hh----cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99    6999999999999999999999999999999999999999999999999999999988775 34433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.55  E-value=4.1e-15  Score=132.44  Aligned_cols=127  Identities=11%  Similarity=0.138  Sum_probs=82.5

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASA-----------------TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQ  223 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~  223 (316)
                      ...|++++|+..|+++++..|++.                 .+++++|.++...|++++|+.+++++++    .+|++..
T Consensus       190 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~~~  265 (338)
T 2if4_A          190 FKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT----EEEKNPK  265 (338)
T ss_dssp             CSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH----HCTTCHH
T ss_pred             HhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHH
Confidence            389999999999999999999876                 4999999999999999999999999999    6999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCChh
Q 021175          224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY-EKKKDLKSALKAFEEVLLFDPNNKV  291 (316)
Q Consensus       224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~  291 (316)
                      +++++|.+|..+|++++|++.|+++++++|++..++.+++.+. ...++.+++...|++++..+|+++.
T Consensus       266 a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          266 ALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            9999999999999999999999999999999999999999984 4567788999999999999998764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.55  E-value=5.6e-13  Score=110.48  Aligned_cols=160  Identities=14%  Similarity=0.079  Sum_probs=132.2

Q ss_pred             ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 021175          117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRR----ELDLSAKELQEQVRSGDASATEYFELGA  192 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~lg~  192 (316)
                      .++..+|...|+.+.  +.+..       .++..+|..+.     . +    ++++|+..|+++.+  +.++.+++++|.
T Consensus        31 ~~~~~~A~~~~~~a~--~~g~~-------~a~~~lg~~y~-----~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~   93 (212)
T 3rjv_A           31 SGDYQKAEYWAQKAA--AQGDG-------DALALLAQLKI-----R-NPQQADYPQARQLAEKAVE--AGSKSGEIVLAR   93 (212)
T ss_dssp             HTCHHHHHHHHHHHH--HTTCH-------HHHHHHHHHTT-----S-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH--HcCCH-------HHHHHHHHHHH-----c-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHH
Confidence            467778888887443  33333       34445555554     3 5    89999999999965  578999999999


Q ss_pred             HHHH----cCChHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175          193 VMLR----RKFYPAATKYLLQAIEKWDGDDQ--DLAQVYNALGVSYVR----EGKLDKGISQFETAVKLQPGYVTAWNNL  262 (316)
Q Consensus       193 ~~~~----~g~~~~A~~~~~~al~~~~~~~p--~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  262 (316)
                      +|..    .+++++|+++|+++++    ..|  .++.++++||.+|..    .+++++|+++|+++++. |.++.+++++
T Consensus        94 ~y~~g~g~~~d~~~A~~~~~~A~~----~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~L  168 (212)
T 3rjv_A           94 VLVNRQAGATDVAHAITLLQDAAR----DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWA  168 (212)
T ss_dssp             HHTCGGGSSCCHHHHHHHHHHHTS----STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHH----cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence            9998    8999999999999999    566  569999999999999    89999999999999998 7788899999


Q ss_pred             HHHHHHc-C-----CHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 021175          263 GDAYEKK-K-----DLKSALKAFEEVLLFDPNNKVARPRRDALK  300 (316)
Q Consensus       263 g~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~a~~~l~~l~  300 (316)
                      |.+|... |     ++++|+.+|+++.+.  +++.+...++.+.
T Consensus       169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~--g~~~A~~~l~~l~  210 (212)
T 3rjv_A          169 GMMFQQGEKGFIEPNKQKALHWLNVSCLE--GFDTGCEEFDRIS  210 (212)
T ss_dssp             HHHHHHCBTTTBCCCHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHhh
Confidence            9999874 3     899999999999987  4567777777664

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.54  E-value=6.3e-15  Score=110.24  Aligned_cols=98  Identities=13%  Similarity=0.107  Sum_probs=87.5

Q ss_pred             HhhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175          162 VRRELDLSAKELQEQVRS---GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~  238 (316)
                      ..|++++|+..|+++++.   +|+++.++.++|.++...|++++|+++++++++    .+|+++.+++++|.++...|++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~   77 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK----QFPNHQALRVFYAMVLYNLGRY   77 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHcCCH
Confidence            468899999999999999   588999999999999999999999999999999    6999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLG  263 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg  263 (316)
                      ++|++.++++++.+|+++.......
T Consensus        78 ~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           78 EQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            9999999999999999987765443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.54  E-value=2.7e-13  Score=102.35  Aligned_cols=108  Identities=14%  Similarity=0.086  Sum_probs=96.2

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH---HHHHHHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASA---TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL---AQVYNALGVSYV  233 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~---~~~~~~lg~~~~  233 (316)
                      +...|++++|++.++++++.+|+++   .+++.+|.++...|++++|+..|+++++    ..|++   +.+++++|.++.
T Consensus        12 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A           12 ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS----RYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH----HCCCCcccHHHHHHHHHHHH
Confidence            4489999999999999999999988   8999999999999999999999999999    46766   899999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 021175          234 REGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD  271 (316)
Q Consensus       234 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  271 (316)
                      ..|++++|++.|+++++.+|++..+......+....++
T Consensus        88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            99999999999999999999998877766655544443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.54  E-value=6.1e-13  Score=116.27  Aligned_cols=171  Identities=10%  Similarity=-0.058  Sum_probs=150.3

Q ss_pred             hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---
Q 021175          120 NVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRR--ELDLSAKELQEQVRSGDASATEYFELGAVM---  194 (316)
Q Consensus       120 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~---  194 (316)
                      .+.+..+++.+..++|.....       +...+....     ..+  +++++++.+.+++..+|++..+|+..+.++   
T Consensus        49 s~~aL~~t~~~L~~nP~~~ta-------Wn~R~~~L~-----~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~  116 (306)
T 3dra_A           49 SERALHITELGINELASHYTI-------WIYRFNILK-----NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQI  116 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHH-----TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcHHHHH-------HHHHHHHHH-----HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence            455677777777777776533       333333332     455  899999999999999999999999999999   


Q ss_pred             -HHc---CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 021175          195 -LRR---KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD--KGISQFETAVKLQPGYVTAWNNLGDAYEK  268 (316)
Q Consensus       195 -~~~---g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~lg~~~~~  268 (316)
                       ...   +++++++++++++++    .+|.+..+|+..+.+....|+++  ++++.++++++.+|.+..+|.+.+.+...
T Consensus       117 ~~~l~~~~~~~~EL~~~~~~l~----~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~  192 (306)
T 3dra_A          117 MELNNNDFDPYREFDILEAMLS----SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS  192 (306)
T ss_dssp             HHHTTTCCCTHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred             HHhccccCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence             666   899999999999999    69999999999999999999999  99999999999999999999999999999


Q ss_pred             cCC------HHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          269 KKD------LKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       269 ~g~------~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      .|+      ++++++++++++..+|++..+|..++.+....|+.
T Consensus       193 l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~  236 (306)
T 3dra_A          193 KKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRS  236 (306)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCC
T ss_pred             ccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCC
Confidence            988      99999999999999999999999999999998875

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.53  E-value=4.5e-13  Score=126.16  Aligned_cols=171  Identities=13%  Similarity=0.043  Sum_probs=141.1

Q ss_pred             HHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCC
Q 021175          122 QMDAVYEIGEL-FELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASA-TEYFELGAVMLRRKF  199 (316)
Q Consensus       122 ~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~  199 (316)
                      .|...++.+.. ..|....       .+...+.++.     ..|++++|.+.|+++++.+|.++ .+|.++|..+.+.|+
T Consensus       304 ~A~~~~~~Al~~~~p~~~~-------l~~~~~~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  371 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNML-------LYFAYADYEE-----SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG  371 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHH-------HHHHHHHHHH-----HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHH-------HHHHHHHHHH-----hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence            67778875554 4444332       2333333443     78999999999999999999885 699999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 021175          200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVS-YVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKA  278 (316)
Q Consensus       200 ~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  278 (316)
                      +++|.+.|+++++    ..|.....+...+.+ +...|++++|.+.|+++++.+|+++.+|..++..+...|+.++|...
T Consensus       372 ~~~A~~~~~~Al~----~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~  447 (530)
T 2ooe_A          372 IKSGRMIFKKARE----DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL  447 (530)
T ss_dssp             HHHHHHHHHHHHT----CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHh----ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence            9999999999999    567666666666655 44699999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCChh----HHHHHHHHHhhCCCCCC
Q 021175          279 FEEVLLFDPNNKV----ARPRRDALKDRVPLYKG  308 (316)
Q Consensus       279 ~~~al~~~p~~~~----a~~~l~~l~~~~~~~~~  308 (316)
                      |++++...|.+++    .|......+...|+.++
T Consensus       448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~  481 (530)
T 2ooe_A          448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS  481 (530)
T ss_dssp             HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            9999999877665    77777778888887654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.53  E-value=1.4e-13  Score=107.12  Aligned_cols=137  Identities=15%  Similarity=0.126  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--C
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDAS------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD--D  218 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~  218 (316)
                      ++..+|..+.     ..|++++|+..++++++..+..      ..++.++|.++...|++++|+++++++++..+..  .
T Consensus        11 ~~~~l~~~~~-----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A           11 AFGNLGNTHY-----LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            3444444444     8999999999999999876532      3589999999999999999999999999965431  2


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175          219 QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN  288 (316)
Q Consensus       219 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  288 (316)
                      +....++.++|.++...|++++|++.+++++++.+.      ...++.++|.++...|++++|.+++++++++...
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            234778999999999999999999999999987432      2678899999999999999999999999987554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.53  E-value=1.9e-13  Score=128.70  Aligned_cols=143  Identities=13%  Similarity=0.004  Sum_probs=130.0

Q ss_pred             hhhHH-------HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHH
Q 021175          163 RRELD-------LSAKELQEQVR-SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLA-QVYNALGVSYV  233 (316)
Q Consensus       163 ~~~~~-------~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~-~~~~~lg~~~~  233 (316)
                      .|+++       +|++.++++++ ..|++...|..+|..+...|++++|.+.|+++++    .+|.++ .+|.++|.++.
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~  367 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFAR  367 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SSSSCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC----ccccCchHHHHHHHHHHH
Confidence            57766       99999999997 8999999999999999999999999999999999    678764 69999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          234 REGKLDKGISQFETAVKLQPGYVTAWNNLGDA-YEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       234 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +.|++++|.+.|++|++..|.....+...+.+ +...|++++|...|+++++.+|+++..+..++.++...|+.++|
T Consensus       368 ~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~A  444 (530)
T 2ooe_A          368 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT  444 (530)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHH
T ss_pred             HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhH
Confidence            99999999999999999999888877776655 45699999999999999999999999999999999998887544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.52  E-value=1.1e-13  Score=124.69  Aligned_cols=123  Identities=18%  Similarity=0.224  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------------cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVR----------------SGDASATEYFELGAVMLRRKFYPAATKYLLQA  210 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  210 (316)
                      .+...|..+.     ..|++++|++.|+++++                .+|....++.++|.++...|++++|+++++++
T Consensus       225 ~~~~~g~~~~-----~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          225 DLKNIGNTFF-----KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-----HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3444444444     89999999999999998                77888999999999999999999999999999


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 021175          211 IEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKA  278 (316)
Q Consensus       211 l~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  278 (316)
                      ++    .+|+++.+++++|.+|..+|++++|++.|+++++++|++..++..++.++..+++++++.+.
T Consensus       300 l~----~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          300 LE----IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HT----TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HH----hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99    79999999999999999999999999999999999999999999999999999998887653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=2.5e-13  Score=104.72  Aligned_cols=104  Identities=15%  Similarity=0.122  Sum_probs=98.2

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175          161 LVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK  237 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~  237 (316)
                      ...|++++|++.|+++++.+|++   ..++.++|.++...|++++|+++++++++    .+|+++.+++++|.++...|+
T Consensus        39 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~  114 (148)
T 2dba_A           39 FKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE----KDGGDVKALYRRSQALEKLGR  114 (148)
T ss_dssp             HTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTSCCHHHHHHHHHHHHHHTC
T ss_pred             HHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh----hCccCHHHHHHHHHHHHHcCC
Confidence            38999999999999999999987   89999999999999999999999999999    588899999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 021175          238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEK  268 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  268 (316)
                      +++|++.|+++++++|++..++..++.+...
T Consensus       115 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          115 LDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            9999999999999999999999888877543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.51  E-value=2.1e-14  Score=115.08  Aligned_cols=112  Identities=13%  Similarity=0.159  Sum_probs=102.2

Q ss_pred             HHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH
Q 021175          194 MLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDA-YEKKKDL  272 (316)
Q Consensus       194 ~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~  272 (316)
                      +...|++++|++.++++++    .+|+++.+++.+|.++...|++++|++.|+++++++|+++.++.++|.+ +...|++
T Consensus        20 ~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIR----ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH   95 (177)
T ss_dssp             CC-----CCCCHHHHHHHH----HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred             hhhccCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence            3467899999999999999    5899999999999999999999999999999999999999999999999 8899999


Q ss_pred             --HHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          273 --KSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       273 --~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                        ++|+.+++++++.+|++..++..++.++...|++++|
T Consensus        96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  134 (177)
T 2e2e_A           96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA  134 (177)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHH
Confidence              9999999999999999999999999999999998755

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.51  E-value=2.8e-13  Score=101.80  Aligned_cols=105  Identities=18%  Similarity=0.230  Sum_probs=96.5

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH-------HHHHHHHHHHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL-------AQVYNALGVSYV  233 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~-------~~~~~~lg~~~~  233 (316)
                      ...|++++|+..++++++.+|+++.++.++|.++...|++++|+.+++++++.    .|.+       ..+++++|.++.
T Consensus        15 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~la~~~~   90 (131)
T 1elr_A           15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV----GRENREDYRQIAKAYARIGNSYF   90 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh----ccccchhHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999995    5544       889999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 021175          234 REGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK  270 (316)
Q Consensus       234 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  270 (316)
                      ..|++++|++.|+++++.+| +......++.+....+
T Consensus        91 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           91 KEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999999999 5888888888776544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.51  E-value=1.8e-13  Score=117.40  Aligned_cols=133  Identities=11%  Similarity=-0.004  Sum_probs=119.1

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHHcCCHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL-AQVYNALGVSYVREGKLD  239 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~-~~~~~~lg~~~~~~g~~~  239 (316)
                      ...|++++|.+.|+..+..+|++. ..+.+|.++.+.++|++|+.+++++.+.   .+|.. ..+++++|.++..+|+++
T Consensus       113 ~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~al~~LG~~~  188 (282)
T 4f3v_A          113 AAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVAAANLALFT  188 (282)
T ss_dssp             HHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHHHHHCCCHH
Confidence            389999999999999999999888 9999999999999999999999988772   13332 468999999999999999


Q ss_pred             HHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175          240 KGISQFETAVKLQ--PG-YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA  298 (316)
Q Consensus       240 ~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  298 (316)
                      +|+++|++++...  |. ..++++++|.++.++|+.++|...|++++..+|+ +.++..|..
T Consensus       189 eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            9999999999654  66 6789999999999999999999999999999999 888887743

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.49  E-value=4.3e-13  Score=109.16  Aligned_cols=149  Identities=14%  Similarity=0.123  Sum_probs=125.7

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~  238 (316)
                      +..|++++|.+.++......+..+.++..+|.++...|++++|+.+++++++....  ..|....++.++|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            36899999999666667788899999999999999999999999999999997654  3567889999999999999999


Q ss_pred             HHHHHHHHHHHHh---CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHhhCCC
Q 021175          239 DKGISQFETAVKL---QPG----YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN------KVARPRRDALKDRVPL  305 (316)
Q Consensus       239 ~~A~~~~~~al~~---~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~l~~~~~~  305 (316)
                      ++|++.+++++++   .++    ...++.++|.++...|++++|..++++++++.+..      ..++..++.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            9999999999998   442    35779999999999999999999999999764332      2335789999999999


Q ss_pred             CCCC
Q 021175          306 YKGV  309 (316)
Q Consensus       306 ~~~A  309 (316)
                      +++|
T Consensus       163 ~~~A  166 (203)
T 3gw4_A          163 LLEA  166 (203)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8755

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.46  E-value=6.5e-12  Score=111.08  Aligned_cols=171  Identities=11%  Similarity=0.003  Sum_probs=148.5

Q ss_pred             hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-
Q 021175          120 NVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRR-ELDLSAKELQEQVRSGDASATEYFELGAVMLRR-  197 (316)
Q Consensus       120 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-  197 (316)
                      .+.+..+++.+..+++.....       +...+....     ..+ .++++++.+.+++..+|++..+|+..+.++... 
T Consensus        70 se~AL~lt~~~L~~nP~~yta-------Wn~R~~iL~-----~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~  137 (349)
T 3q7a_A           70 SERALELTEIIVRMNPAHYTV-------WQYRFSLLT-----SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRIS  137 (349)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHH-----HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhCchhHHH-------HHHHHHHHH-----HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence            445666777666677666533       333333332     455 599999999999999999999999999999998 


Q ss_pred             C-ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 021175          198 K-FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD--------KGISQFETAVKLQPGYVTAWNNLGDAYEK  268 (316)
Q Consensus       198 g-~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~lg~~~~~  268 (316)
                      + ++++++++++++++    .+|.+..+|...+.+....|+++        +++++++++++.+|.+..+|.+.+.+...
T Consensus       138 ~~~~~~EL~~~~k~L~----~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~  213 (349)
T 3q7a_A          138 PQDPVSEIEYIHGSLL----PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS  213 (349)
T ss_dssp             CSCCHHHHHHHHHHTS----SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred             CCChHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            8 99999999999999    79999999999999999998888        99999999999999999999999999999


Q ss_pred             cCC-------HHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          269 KKD-------LKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       269 ~g~-------~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      .++       ++++++++++++.++|++..+|..+..+....|+.
T Consensus       214 l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          214 RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence            987       79999999999999999999999998888887754

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.46  E-value=9.1e-13  Score=96.56  Aligned_cols=89  Identities=13%  Similarity=0.149  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHH
Q 021175          221 LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN------KVARP  294 (316)
Q Consensus       221 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~  294 (316)
                      ++..++++|.++...|++++|++.|+++++++|+++.+++++|.++..+|++++|+..++++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            355667777777777777777777777777777777777777777777777777777777777777776      66677


Q ss_pred             HHHHHHhhCCCCCCC
Q 021175          295 RRDALKDRVPLYKGV  309 (316)
Q Consensus       295 ~l~~l~~~~~~~~~A  309 (316)
                      .++.++..+|+++.+
T Consensus        83 ~~~~~~~~~~~~~~a   97 (111)
T 2l6j_A           83 RLELAQGAVGSVQIP   97 (111)
T ss_dssp             HHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHhHhhh
Confidence            777777777666555

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.43  E-value=5.8e-13  Score=98.88  Aligned_cols=83  Identities=24%  Similarity=0.393  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          202 AATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE  281 (316)
Q Consensus       202 ~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  281 (316)
                      +|++.|+++++    .+|+++.+++++|.++...|++++|++.|+++++.+|++..+++++|.+|...|++++|+..|++
T Consensus         3 ~a~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLA----QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHT----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45666666666    46666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHhcCCC
Q 021175          282 VLLFDPN  288 (316)
Q Consensus       282 al~~~p~  288 (316)
                      +++++|+
T Consensus        79 al~~~~~   85 (115)
T 2kat_A           79 GLAAAQS   85 (115)
T ss_dssp             HHHHHHH
T ss_pred             HHHhccc
Confidence            6666653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.43  E-value=1.8e-11  Score=107.74  Aligned_cols=177  Identities=9%  Similarity=-0.024  Sum_probs=142.6

Q ss_pred             hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 021175          120 NVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKF  199 (316)
Q Consensus       120 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  199 (316)
                      .+.+..++..+..++|........-...+..++...  ........+++++..+.+++..+|.+..+|...+.++...++
T Consensus        46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~--~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~  123 (331)
T 3dss_A           46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEK--SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  123 (331)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccc--cchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc
Confidence            445677888777777776644333322222211100  000112347899999999999999999999999999999984


Q ss_pred             --hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-------
Q 021175          200 --YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK-LDKGISQFETAVKLQPGYVTAWNNLGDAYEKK-------  269 (316)
Q Consensus       200 --~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-------  269 (316)
                        ++++++++.++++    .+|.+..+|...+.+....|+ +++++++++++++.+|++..+|.+++.++...       
T Consensus       124 ~~~~~EL~~~~k~l~----~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~  199 (331)
T 3dss_A          124 PNWARELELCARFLE----ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  199 (331)
T ss_dssp             CCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred             ccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence              8999999999999    699999999999999999999 69999999999999999999999999999887       


Q ss_pred             -------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          270 -------KDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       270 -------g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                             +.++++++++.+++..+|++..+|..+..+...
T Consensus       200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~  239 (331)
T 3dss_A          200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA  239 (331)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred             cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence                   568999999999999999999999755444433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.43  E-value=1.9e-12  Score=91.29  Aligned_cols=85  Identities=32%  Similarity=0.606  Sum_probs=64.1

Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175          219 QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA  298 (316)
Q Consensus       219 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  298 (316)
                      |.++.+++.+|.++...|++++|++.++++++.+|++..+++++|.++...|++++|+.+++++++++|++..++.+++.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhhC
Q 021175          299 LKDRV  303 (316)
Q Consensus       299 l~~~~  303 (316)
                      ++...
T Consensus        86 ~~~~~   90 (91)
T 1na3_A           86 AKQKQ   90 (91)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            76554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.43  E-value=7.3e-14  Score=119.85  Aligned_cols=183  Identities=10%  Similarity=-0.072  Sum_probs=144.6

Q ss_pred             ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCH------------
Q 021175          117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASA------------  184 (316)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------------  184 (316)
                      -++...|.+.|..+...+|...-.+......--.-+....     ..++..+++..+++.+++.|...            
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~-----~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~   93 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLF-----RAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD   93 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHH-----HHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred             CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHH-----HHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence            4677778889998888888877444322100000022232     56667888899999999777643            


Q ss_pred             ---------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175          185 ---------TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       185 ---------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  255 (316)
                               +....++.++...|+|++|.+.|+..+.    ..|++. .++.+|.++++.|++++|+..|+++.+..+..
T Consensus        94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~----~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV----AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC----TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred             cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence                     3455588999999999999999999988    689888 99999999999999999999999887753222


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-ChhHHHHHHHHHhhCCCCCCC
Q 021175          256 --VTAWNNLGDAYEKKKDLKSALKAFEEVLLFD--PN-NKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       256 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~l~~l~~~~~~~~~A  309 (316)
                        ..+++++|.++..+|++++|+.+|++++.-.  |. ..+++..++.+..++|+.++|
T Consensus       169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA  227 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA  227 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH
Confidence              4689999999999999999999999998654  55 567999999999999998765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.43  E-value=2.7e-12  Score=121.77  Aligned_cols=143  Identities=8%  Similarity=-0.013  Sum_probs=133.7

Q ss_pred             Hhhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 021175          162 VRRE-LDLSAKELQEQVRSGDASATEYFELGAVMLRRKF----------YPAATKYLLQAIEKWDGDDQDLAQVYNALGV  230 (316)
Q Consensus       162 ~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~  230 (316)
                      ..++ .++|++.+.+++..+|++..+|+..+.++...|+          ++++++.++++++    .+|++..+|++.+.
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~----~~pK~y~aW~hR~w  115 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR----VNPKSYGTWHHRCW  115 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH----hCCCCHHHHHHHHH
Confidence            3444 4688999999999999999999999999999988          9999999999999    69999999999999


Q ss_pred             HHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCC
Q 021175          231 SYVREG--KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK-DLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK  307 (316)
Q Consensus       231 ~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~  307 (316)
                      ++...|  +++++++.++++++.+|.+..+|...+.+....| .+++++++++++++.+|++..+|...+.+...++...
T Consensus       116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence            999999  7799999999999999999999999999999999 9999999999999999999999999999998876554


Q ss_pred             C
Q 021175          308 G  308 (316)
Q Consensus       308 ~  308 (316)
                      +
T Consensus       196 ~  196 (567)
T 1dce_A          196 D  196 (567)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.43  E-value=6.2e-14  Score=102.92  Aligned_cols=95  Identities=13%  Similarity=0.153  Sum_probs=87.9

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------H
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY------V  256 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~  256 (316)
                      .+.++..+|.++...|++++|++.|+++++    .+|+++.+++++|.++...|++++|++.++++++++|++      .
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~   78 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS   78 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            467899999999999999999999999999    699999999999999999999999999999999999998      8


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          257 TAWNNLGDAYEKKKDLKSALKAFEE  281 (316)
Q Consensus       257 ~~~~~lg~~~~~~g~~~~A~~~~~~  281 (316)
                      .+++.+|.++...|++++|+..+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           79 KLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            9999999999999988887766554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.42  E-value=3.1e-12  Score=114.52  Aligned_cols=148  Identities=9%  Similarity=-0.125  Sum_probs=100.9

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASA-----TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ--DLAQVYNALGVSYVR  234 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p--~~~~~~~~lg~~~~~  234 (316)
                      ..|++++|+..+++++...|...     .++..+|.++...|++++|.+.++++++..+....  ....++.++|.++..
T Consensus        26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  105 (373)
T 1hz4_A           26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  105 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            67777778877777777666432     25677777777778888888888777775432111  223456677777777


Q ss_pred             cCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHHHHh
Q 021175          235 EGKLDKGISQFETAVKLQ--------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN-----KVARPRRDALKD  301 (316)
Q Consensus       235 ~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~l~~l~~  301 (316)
                      .|++++|++.+++++++.        |....++.++|.++...|++++|..++++++++.|..     ..++..++.++.
T Consensus       106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  185 (373)
T 1hz4_A          106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL  185 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence            888888888877777754        3345566777777777788888888887777776643     234666777777


Q ss_pred             hCCCCCCC
Q 021175          302 RVPLYKGV  309 (316)
Q Consensus       302 ~~~~~~~A  309 (316)
                      ..|++++|
T Consensus       186 ~~g~~~~A  193 (373)
T 1hz4_A          186 ARGDLDNA  193 (373)
T ss_dssp             HHTCHHHH
T ss_pred             HcCCHHHH
Confidence            77776543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.41  E-value=7.6e-12  Score=109.31  Aligned_cols=140  Identities=11%  Similarity=-0.016  Sum_probs=132.2

Q ss_pred             HhhhH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH----HH
Q 021175          162 VRREL-DLSAKELQEQVRSGDASATEYFELGAVMLRRK--FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY----VR  234 (316)
Q Consensus       162 ~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~----~~  234 (316)
                      ..+.+ ++|+..+.+++.++|++..+|+..+.++...|  +++++++++++++.    .+|.+..+|+..+.++    ..
T Consensus        44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~----~nPk~y~aW~~R~~iL~~~~~~  119 (306)
T 3dra_A           44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL----DNEKNYQIWNYRQLIIGQIMEL  119 (306)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH----HCcccHHHHHHHHHHHHHHHHh
Confidence            45555 68999999999999999999999999999999  99999999999999    6999999999999999    77


Q ss_pred             c---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          235 E---GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLK--SALKAFEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       235 ~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      .   ++++++++.++++++.+|.+..+|+..+.+....|+++  +++++++++++.+|.|-.+|...+.+...++.
T Consensus       120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            7   89999999999999999999999999999999999998  99999999999999999999999999888765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.41  E-value=8.8e-12  Score=96.07  Aligned_cols=123  Identities=20%  Similarity=0.136  Sum_probs=108.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCC
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR----EGK  237 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~----~g~  237 (316)
                      ..+++++|++.|+++.+.++..+.    +|.+|...+..++|+++|+++.+    .  .++.+++++|.+|..    .++
T Consensus         7 ~~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~----~--g~~~a~~~Lg~~y~~G~g~~~d   76 (138)
T 1klx_A            7 VKKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACE----L--NSGNGCRFLGDFYENGKYVKKD   76 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHH----T--TCHHHHHHHHHHHHHCSSSCCC
T ss_pred             CccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHc----C--CCHHHHHHHHHHHHcCCCCCcc
Confidence            357899999999999998755544    99999999999999999999998    2  678999999999999    899


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175          238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEK----KKDLKSALKAFEEVLLFDPNNKVARPRRDA  298 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~  298 (316)
                      +++|+++|+++.+.  .++.+.+++|.+|..    .+++++|+.+|+++.+.  +++.+..+++.
T Consensus        77 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~  137 (138)
T 1klx_A           77 LRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN  137 (138)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred             HHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence            99999999999986  789999999999999    99999999999999987  45666666543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.40  E-value=2.6e-11  Score=108.45  Aligned_cols=188  Identities=12%  Similarity=-0.027  Sum_probs=136.6

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcC--------CCCHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSG--------DASATEY  187 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~  187 (316)
                      ..++.+.+...++.+....+....... ...++..++..+.     ..|++++|+..++++++..        |....++
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~~~-----~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  138 (373)
T 1hz4_A           65 CKGELTRSLALMQQTEQMARQHDVWHY-ALWSLIQQSEILF-----AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV  138 (373)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHH
Confidence            345666777777655554444332221 1233444455554     8999999999999998864        3346678


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c-HHHH----
Q 021175          188 FELGAVMLRRKFYPAATKYLLQAIEKWDGDD-QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG--Y-VTAW----  259 (316)
Q Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~-~~~~----  259 (316)
                      .++|.++...|++++|..+++++++..+... +....++.++|.++...|++++|.+.+++++++.+.  . ....    
T Consensus       139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~  218 (373)
T 1hz4_A          139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN  218 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence            8999999999999999999999999755422 235678899999999999999999999999987432  2 1111    


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHhhCCCCCCC
Q 021175          260 NNLGDAYEKKKDLKSALKAFEEVLLFDPNNK----VARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       260 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~l~~l~~~~~~~~~A  309 (316)
                      ...+.++...|++++|...++++++..|...    ..+..++.++...|++++|
T Consensus       219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  272 (373)
T 1hz4_A          219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPA  272 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence            1344568899999999999999998877542    2456788888888887654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.40  E-value=1.6e-11  Score=114.39  Aligned_cols=134  Identities=19%  Similarity=0.146  Sum_probs=111.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC-
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRR-----KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG-  236 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g-  236 (316)
                      .+++++|+..|+++.+.  .++.+++.+|.++...     +++++|+.+|+++++    .  .++.+++++|.+|...| 
T Consensus       272 ~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~----~--~~~~a~~~lg~~y~~~g~  343 (490)
T 2xm6_A          272 AKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE----Q--GDATAQANLGAIYFRLGS  343 (490)
T ss_dssp             SCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH----T--TCHHHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh----c--CCHHHHHHHHHHHHhCCC
Confidence            67888999999988765  5678889999998887     899999999999888    2  34578889999998866 


Q ss_pred             --CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh----CCCC
Q 021175          237 --KLDKGISQFETAVKLQPGYVTAWNNLGDAYEK----KKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR----VPLY  306 (316)
Q Consensus       237 --~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~----~~~~  306 (316)
                        ++++|+++|+++++.  +++.+++++|.+|..    .+++++|+.+|+++.+.  +++.++.+++.++..    .+++
T Consensus       344 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~  419 (490)
T 2xm6_A          344 EEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDY  419 (490)
T ss_dssp             HHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             cccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence              889999999999886  678899999999998    89999999999999875  468899999999887    5554


Q ss_pred             CC
Q 021175          307 KG  308 (316)
Q Consensus       307 ~~  308 (316)
                      ++
T Consensus       420 ~~  421 (490)
T 2xm6_A          420 VQ  421 (490)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.40  E-value=1.5e-12  Score=95.01  Aligned_cols=90  Identities=12%  Similarity=0.008  Sum_probs=87.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHc-CCH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD--LAQVYNALGVSYVRE-GKL  238 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~--~~~~~~~lg~~~~~~-g~~  238 (316)
                      ..|++++|+..++++++.+|++..++.++|.++...|++++|+++++++++    ..|.  +..++.++|.++... |++
T Consensus        18 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~l~~~~~~~~~~~   93 (112)
T 2kck_A           18 DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN----VIEDEYNKDVWAAKADALRYIEGKE   93 (112)
T ss_dssp             SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TSCCTTCHHHHHHHHHHHTTCSSCS
T ss_pred             HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCcccchHHHHHHHHHHHHHHhCCH
Confidence            899999999999999999999999999999999999999999999999999    6888  999999999999999 999


Q ss_pred             HHHHHHHHHHHHhCCCc
Q 021175          239 DKGISQFETAVKLQPGY  255 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~  255 (316)
                      ++|+++++++++..|++
T Consensus        94 ~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           94 VEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHhhcccCC
Confidence            99999999999999875

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.40  E-value=2.6e-11  Score=112.97  Aligned_cols=128  Identities=12%  Similarity=0.117  Sum_probs=70.5

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLR----RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR----  234 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~----  234 (316)
                      .+++++|++.|+++.+.  .++.+++++|.+|..    .+++++|+++|+++.+      ++++.+++++|.+|..    
T Consensus        92 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~~~~~a~~~Lg~~y~~g~g~  163 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE------QGRDSGQQSMGDAYFEGDGV  163 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSS
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCC
Confidence            45566666666665543  345555666666555    5566666666666554      1344555555555555    


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          235 EGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK----KKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       235 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      .+++++|+++|+++++.  +++.+++++|.+|..    .+++++|+.+|+++.+.  +++.+...++.++..
T Consensus       164 ~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~  231 (490)
T 2xm6_A          164 TRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYF  231 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            55555555555555553  345555555555555    55555555555555543  344555555555543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.39  E-value=2.6e-12  Score=90.57  Aligned_cols=85  Identities=31%  Similarity=0.543  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 021175          182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNN  261 (316)
Q Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  261 (316)
                      ..+.+++.+|.++...|++++|+++++++++    .+|+++.++.++|.++...|++++|++.++++++++|++..++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~   82 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN   82 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            4578899999999999999999999999999    589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 021175          262 LGDAYEKKK  270 (316)
Q Consensus       262 lg~~~~~~g  270 (316)
                      +|.++...|
T Consensus        83 l~~~~~~~g   91 (91)
T 1na3_A           83 LGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999998765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.38  E-value=3.6e-12  Score=94.51  Aligned_cols=98  Identities=15%  Similarity=0.176  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          168 LSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFET  247 (316)
Q Consensus       168 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  247 (316)
                      ++++.|+++++.+|+++.+++++|.++...|++++|+.+|+++++    .+|++..+++++|.++...|++++|++.|++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD----FDPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999    6899999999999999999999999999999


Q ss_pred             HHHhCCC--cHHHHHHHHHHHHHc
Q 021175          248 AVKLQPG--YVTAWNNLGDAYEKK  269 (316)
Q Consensus       248 al~~~p~--~~~~~~~lg~~~~~~  269 (316)
                      +++++|+  +......+...+...
T Consensus        79 al~~~~~~~~~~~~~~l~~~l~~l  102 (115)
T 2kat_A           79 GLAAAQSRGDQQVVKELQVFLRRL  102 (115)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhccccccHHHHHHHHHHHHHh
Confidence            9999885  344444554444433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.36  E-value=2e-12  Score=100.49  Aligned_cols=126  Identities=14%  Similarity=0.121  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY------  255 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------  255 (316)
                      ..++..+|.++...|++++|+++++++++..+.  ..+....++.++|.++...|++++|++++++++++.+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            567899999999999999999999999996432  112334689999999999999999999999999876543      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHhhCCCCCCC
Q 021175          256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN------NKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ..++.++|.++...|++++|..++++++++.+.      ...++..++.++...|++++|
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  148 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  148 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence            678999999999999999999999999987432      245678889999999988654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.35  E-value=2.3e-11  Score=107.58  Aligned_cols=140  Identities=16%  Similarity=0.054  Sum_probs=132.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-C-CHH
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK-FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE-G-KLD  239 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~-g-~~~  239 (316)
                      .+..++|++.+.+++..+|++..+|+..+.+....| +++++++.+++++.    .+|++..+|+..+.++... + +++
T Consensus        67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~----~nPKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV----QNLKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----TTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHhcCCChH
Confidence            344578999999999999999999999999999999 59999999999999    7999999999999999998 8 999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLK--------SALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      ++++.++++++.+|.+..+|...+.+....|+++        +++++++++++.+|.|..+|...+.+...++..
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~  217 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA  217 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999998888        999999999999999999999999999888763

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.35  E-value=3.8e-12  Score=92.31  Aligned_cols=89  Identities=17%  Similarity=0.272  Sum_probs=65.0

Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHH
Q 021175          218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN--KVARPR  295 (316)
Q Consensus       218 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~  295 (316)
                      +|+++.+++++|.++...|++++|++.|+++++++|+++.+++++|.+|...|++++|+..|++++++.|++  ......
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            677778888888888888888888888888888888888888888888888888888888888888776643  344445


Q ss_pred             HHHHHhhCCCC
Q 021175          296 RDALKDRVPLY  306 (316)
Q Consensus       296 l~~l~~~~~~~  306 (316)
                      +..+....+..
T Consensus        83 l~~~l~~~~~~   93 (100)
T 3ma5_A           83 LQDAKLKAEGL   93 (100)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHcccc
Confidence            55555554444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.32  E-value=7.7e-11  Score=108.89  Aligned_cols=124  Identities=20%  Similarity=0.155  Sum_probs=109.3

Q ss_pred             hhHHHHHHHHHHHHHcCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC----
Q 021175          164 RELDLSAKELQEQVRSGDASATEYFELGAV-M--LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG----  236 (316)
Q Consensus       164 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g----  236 (316)
                      +++++|+..|+++.   |.++.+++++|.+ +  ...+++++|+++|+++.+      ++++.+++++|.+|. .|    
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~------~g~~~A~~~Lg~~y~-~G~g~~  300 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA------ADQPRAELLLGKLYY-EGKWVP  300 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH------TTCHHHHHHHHHHHH-HCSSSC
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHH-cCCCCC
Confidence            68999999999987   8899999999998 4  468999999999999987      347889999999998 55    


Q ss_pred             -CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          237 -KLDKGISQFETAVKLQPGYVTAWNNLGDAYEK----KKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       237 -~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                       ++++|+++|+++.   |+++.+++++|.+|..    ..++++|..+|+++.+  ++++.+..+++.++..
T Consensus       301 ~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          301 ADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQ  366 (452)
T ss_dssp             CCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHh
Confidence             9999999999998   9999999999999887    4499999999999886  5678999999998864

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.31  E-value=4.6e-11  Score=110.39  Aligned_cols=137  Identities=16%  Similarity=0.151  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCCCcc
Q 021175          148 LLGVGTFFVIRQVLVRR---ELDLSAKELQEQVRSGDASATEYFELGAVMLRR----KFYPAATKYLLQAIEKWDGDDQD  220 (316)
Q Consensus       148 ~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~p~  220 (316)
                      +..+|..+.     ..|   ++++|++.|+++.+.+|..+..++++|.+|...    +++++|+++|+++.       |+
T Consensus       179 ~~~Lg~~~~-----~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-------~g  246 (452)
T 3e4b_A          179 YVELATVYQ-----KKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-------PG  246 (452)
T ss_dssp             HHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-------GG
T ss_pred             HHHHHHHHH-----HcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-------CC
Confidence            344444454     577   999999999999999999999999999999776    79999999999984       67


Q ss_pred             HHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCChhH
Q 021175          221 LAQVYNALGVS-Y--VREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK-----DLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       221 ~~~~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a  292 (316)
                      ++.+++++|.+ +  ...+++++|+++|+++.+.  +++.+++++|.+|. .|     ++++|+.+|+++.   |+++.+
T Consensus       247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A  320 (452)
T 3e4b_A          247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAA  320 (452)
T ss_dssp             STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence            78899999999 4  4689999999999999864  58999999999998 56     9999999999998   999999


Q ss_pred             HHHHHHHHhh
Q 021175          293 RPRRDALKDR  302 (316)
Q Consensus       293 ~~~l~~l~~~  302 (316)
                      ..+++.++..
T Consensus       321 ~~~Lg~~y~~  330 (452)
T 3e4b_A          321 DYYLGQIYRR  330 (452)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
Confidence            9999998876

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.31  E-value=2.8e-12  Score=92.30  Aligned_cols=91  Identities=13%  Similarity=0.221  Sum_probs=73.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175          188 FELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQ-VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY  266 (316)
Q Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  266 (316)
                      ++.|..+...|++++|++.++++++    .+|+++. +++++|.++...|++++|++.|+++++++|++..++.+     
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-----   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQ----TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-----   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH----HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-----
Confidence            5677888888888888888888888    5788888 88888888888888888888888888888888777654     


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCh
Q 021175          267 EKKKDLKSALKAFEEVLLFDPNNK  290 (316)
Q Consensus       267 ~~~g~~~~A~~~~~~al~~~p~~~  290 (316)
                         +.+.+++..|+++...+|+++
T Consensus        75 ---~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 ---KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             ---HHHHHHHHHHCCTTHHHHCCS
T ss_pred             ---HHHHHHHHHHHHHhccCcccc
Confidence               556778888888877777654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.31  E-value=1.2e-11  Score=115.06  Aligned_cols=127  Identities=10%  Similarity=0.067  Sum_probs=110.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc----CCCCccHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRS-----GDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKW----DGDDQDLAQVYNA  227 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~p~~~~~~~~  227 (316)
                      +..+|+|++|+..+++++++     .|++   ...+.++|.+|..+|+|++|+.+++++++..    ...+|+.+..+++
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            34789999999999999974     3444   5689999999999999999999999999864    3368889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175          228 LGVSYVREGKLDKGISQFETAVKL-----QPGY---VTAWNNLGDAYEKKKDLKSALKAFEEVLLFD  286 (316)
Q Consensus       228 lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  286 (316)
                      ||.+|..+|++++|+..|++|+++     .|++   .+...+++.++..+|.+++|...|+++.+..
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999975     4555   5667899999999999999999999987643

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.29  E-value=9.1e-11  Score=103.24  Aligned_cols=140  Identities=10%  Similarity=0.011  Sum_probs=130.1

Q ss_pred             HhhhHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 021175          162 VRRELD-LSAKELQEQVRSGDASATEYFELGAVMLRRKF----------YPAATKYLLQAIEKWDGDDQDLAQVYNALGV  230 (316)
Q Consensus       162 ~~~~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~  230 (316)
                      ..|+++ +|+..+.+++..+|++..+|+..+.+....++          +++++.++++++.    .+|.+..+|+..+.
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~----~~PKny~aW~hR~w  116 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR----VNPKSYGTWHHRCW  116 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH----hCCCCHHHHHHHHH
Confidence            556665 89999999999999999999999999988776          6899999999999    69999999999999


Q ss_pred             HHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          231 SYVREGK--LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD-LKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       231 ~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      ++...|+  ++++++.+.++++.+|.+..+|...+.+....|+ ++++++++.++++.+|+|..+|..++.+...+..
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~  194 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  194 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence            9999994  9999999999999999999999999999999999 6999999999999999999999999999887754

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.25  E-value=2.7e-11  Score=87.72  Aligned_cols=86  Identities=20%  Similarity=0.261  Sum_probs=72.2

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--H
Q 021175          179 SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY--V  256 (316)
Q Consensus       179 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~  256 (316)
                      .+|+++.+++++|.++...|++++|+++|+++++    .+|+++.+++++|.+|...|++++|++.|++++++.|+.  .
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~   77 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVE----TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ   77 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence            4799999999999999999999999999999999    699999999999999999999999999999999987643  3


Q ss_pred             HHHHHHHHHHHH
Q 021175          257 TAWNNLGDAYEK  268 (316)
Q Consensus       257 ~~~~~lg~~~~~  268 (316)
                      .....+...+..
T Consensus        78 ~~~~~l~~~l~~   89 (100)
T 3ma5_A           78 KDLSELQDAKLK   89 (100)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            444444444433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.23  E-value=3.8e-10  Score=97.99  Aligned_cols=137  Identities=12%  Similarity=0.010  Sum_probs=116.6

Q ss_pred             HhhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCcc----HHHHHHHH--HHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGD--ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD----LAQVYNAL--GVSYV  233 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~----~~~~~~~l--g~~~~  233 (316)
                      ..|++++|++.+.+.+..+|  +..++....+.++..+|+.+.|.+.+++..+    .+|+    +-....++  |.+..
T Consensus       112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~----~~~d~~~~~d~~l~~Laea~v~l  187 (310)
T 3mv2_B          112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN----AIEDTVSGDNEMILNLAESYIKF  187 (310)
T ss_dssp             HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCccccccchHHHHHHHHHHHHH
Confidence            78999999999999999997  8899999999999999999999999999988    5773    23344445  44466


Q ss_pred             HcC--CHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCCChhHHHHHHHH
Q 021175          234 REG--KLDKGISQFETAVKLQPG--YVTAWNNLGDAYEKKKDLKSALKAFEEVLLF----------DPNNKVARPRRDAL  299 (316)
Q Consensus       234 ~~g--~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~~~~a~~~l~~l  299 (316)
                      ..|  ++++|...|+++.+..|+  ....+++   ++..+|++++|.+.+++.++.          +|+++++..++..+
T Consensus       188 ~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l  264 (310)
T 3mv2_B          188 ATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL  264 (310)
T ss_dssp             HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred             HhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence            667  999999999999998887  3445555   899999999999999988876          58899999999888


Q ss_pred             HhhCCC
Q 021175          300 KDRVPL  305 (316)
Q Consensus       300 ~~~~~~  305 (316)
                      ...+|+
T Consensus       265 ~~~lgk  270 (310)
T 3mv2_B          265 ALMQGL  270 (310)
T ss_dssp             HHHTTC
T ss_pred             HHHhCh
Confidence            888886

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.17  E-value=6.4e-11  Score=107.90  Aligned_cols=151  Identities=11%  Similarity=0.082  Sum_probs=90.8

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCCC-----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc-
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDAS-----------------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ-  219 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p-  219 (316)
                      +.....|++++|++.|.++++..|+.                 ..++.++|.+|...|++++|.+++++++...+.... 
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            33447888888888888888877753                 236788888888888888888888888775432211 


Q ss_pred             -cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------C
Q 021175          220 -DLAQVYNALGVSYVREGKLDKGISQFETAVKLQP------GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF------D  286 (316)
Q Consensus       220 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~  286 (316)
                       ....+...+|.++...|++++|++.+++++...+      ....++.++|.+|...|++++|...+++++..      .
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence             1123344455555555666666666655554321      12445555666666666666666665555543      1


Q ss_pred             CCChhHHHHHHHHHhhCCCCCC
Q 021175          287 PNNKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       287 p~~~~a~~~l~~l~~~~~~~~~  308 (316)
                      |...+.+..++.++...|++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~  193 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAK  193 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHH
Confidence            2223445555555555555543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.17  E-value=5.6e-11  Score=110.47  Aligned_cols=121  Identities=8%  Similarity=0.015  Sum_probs=98.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc---H
Q 021175          189 ELGAVMLRRKFYPAATKYLLQAIEKWDG----DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-----PGY---V  256 (316)
Q Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~  256 (316)
                      ..+..+..+|+|++|+..++++++...+    .+|+....+.+||.+|..+|+|++|+.++++++++.     |++   .
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            3444567899999999999999997543    577888999999999999999999999999999762     444   6


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhHH---HHHHHHHhhCCCCCCC
Q 021175          257 TAWNNLGDAYEKKKDLKSALKAFEEVLLF-----DPNNKVAR---PRRDALKDRVPLYKGV  309 (316)
Q Consensus       257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~---~~l~~l~~~~~~~~~A  309 (316)
                      ..+++||.+|..+|++++|...|++++++     .|+++...   .+++..+..++.+++|
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a  454 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN  454 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999976     56665544   4566666555555433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.15  E-value=3.5e-10  Score=81.11  Aligned_cols=78  Identities=15%  Similarity=0.282  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH--HHHHHHHh
Q 021175          225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVT-AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR--PRRDALKD  301 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~--~~l~~l~~  301 (316)
                      .++.|.++...|++++|++.|+++++.+|+++. +++++|.+|..+|++++|+.+|+++++++|++..++  ..++.+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999 999999999999999999999999999999999988  55555444


Q ss_pred             h
Q 021175          302 R  302 (316)
Q Consensus       302 ~  302 (316)
                      .
T Consensus        83 ~   83 (99)
T 2kc7_A           83 F   83 (99)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.09  E-value=1.5e-09  Score=98.74  Aligned_cols=189  Identities=10%  Similarity=-0.049  Sum_probs=138.5

Q ss_pred             hccchHHHHHHHHHHhhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCH-
Q 021175          116 NASENVQMDAVYEIGELFELGIQ----------LSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASA-  184 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-  184 (316)
                      ..++...|.+.|..+....+...          ........++..+|..+.     ..|++++|++.++++++..+... 
T Consensus        16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~-----~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYV-----TMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHccc
Confidence            45566667777764443332211          011111124455555655     89999999999999988665432 


Q ss_pred             -----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 021175          185 -----TEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL------  251 (316)
Q Consensus       185 -----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------  251 (316)
                           .+...+|.++...|++++|++++++++.....  ..+....++.++|.+|...|+|++|.+.+++++..      
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence                 35667888888899999999999999986432  34567889999999999999999999999999875      


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHhhCCCCCCC
Q 021175          252 QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK-------VARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       252 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~~l~~l~~~~~~~~~A  309 (316)
                      .|....++..+|.+|...|++++|...+++++...+...       ..+..++.++...+++++|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A  235 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA  235 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence            234478999999999999999999999999998754332       3345566666666666543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.08  E-value=1.6e-09  Score=77.31  Aligned_cols=76  Identities=16%  Similarity=0.039  Sum_probs=64.1

Q ss_pred             CccHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 021175          218 DQDLAQVYNALGVSYVREGK---LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR  293 (316)
Q Consensus       218 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  293 (316)
                      +|+++..+..+|.+++..++   .++|...++++++++|+++.+.+.+|..++..|++++|+.+|+++++.+|.++...
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~   80 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRV   80 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence            57788888888888876665   68899999999999999999999999999999999999999999998888854443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.07  E-value=4.8e-09  Score=92.79  Aligned_cols=127  Identities=21%  Similarity=0.234  Sum_probs=102.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---C-ChHHHHHHHHHHHHhc--CCCCccHHHHHHHHHHHHHHcC
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRR---K-FYPAATKYLLQAIEKW--DGDDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g-~~~~A~~~~~~al~~~--~~~~p~~~~~~~~lg~~~~~~g  236 (316)
                      ..+..+|+..|+++++.+|+.+.++..++.++...   + .......-+.++++..  -...|.++.++..+|..+...|
T Consensus       212 ~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g  291 (372)
T 3ly7_A          212 DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG  291 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence            55678999999999999999999999998888632   1 1111222222222211  0146888999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 021175          237 KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK  290 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  290 (316)
                      ++++|++.+++|++++|+ ..++..+|.++...|++++|++.|++|++++|..+
T Consensus       292 d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          292 KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            999999999999999975 77889999999999999999999999999999875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.05  E-value=2.3e-09  Score=98.10  Aligned_cols=103  Identities=10%  Similarity=0.056  Sum_probs=84.7

Q ss_pred             HcCChHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---cHHHHHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDG----DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL-----QPG---YVTAWNNLG  263 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg  263 (316)
                      ..|+|++|++.++++++...+    .+|.....+.++|.+|..+|+|++|+.++++++++     .|+   .+..+++||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            458899999999999986433    56777888999999999999999999999999975     244   466789999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhc-----CCCChhHHHHHHH
Q 021175          264 DAYEKKKDLKSALKAFEEVLLF-----DPNNKVARPRRDA  298 (316)
Q Consensus       264 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~l~~  298 (316)
                      .+|..+|++++|+..|++++++     .|+++........
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~  429 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE  429 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            9999999999999999999976     5777766554443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.05  E-value=1.6e-08  Score=87.81  Aligned_cols=128  Identities=5%  Similarity=-0.036  Sum_probs=105.2

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCC----CHHHHHHHHH--HHHHcC--ChHHHHHHHHHHHHhcCCCCcc--HHHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDA----SATEYFELGA--VMLRRK--FYPAATKYLLQAIEKWDGDDQD--LAQVYNALG  229 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~--~~~~~g--~~~~A~~~~~~al~~~~~~~p~--~~~~~~~lg  229 (316)
                      ++..|+.+.|.+.+++..+.+|+    +.....+++.  +....|  ++++|...|+++.+    ..|+  ....+++  
T Consensus       146 ~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~----~~p~~~~~~lLln--  219 (310)
T 3mv2_B          146 ALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ----TFPTWKTQLGLLN--  219 (310)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT----TSCSHHHHHHHHH--
T ss_pred             HHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hCCCcccHHHHHH--
Confidence            34899999999999999999883    2334455544  455556  99999999999988    4665  3445555  


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 021175          230 VSYVREGKLDKGISQFETAVKL----------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRR  296 (316)
Q Consensus       230 ~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  296 (316)
                       ++..+|++++|.+.+++.++.          +|+++.++.|+..+...+|+  +|.++++++.+.+|+++......
T Consensus       220 -~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~  293 (310)
T 3mv2_B          220 -LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ  293 (310)
T ss_dssp             -HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred             -HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence             899999999999999988876          58999999999999999998  89999999999999998776543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.02  E-value=2.6e-09  Score=82.44  Aligned_cols=94  Identities=18%  Similarity=0.172  Sum_probs=52.3

Q ss_pred             hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhcCCCC-c-cHHHHHHHHHHHHHHcCCH
Q 021175          164 RELDLSAKELQEQVRSGDASATEYFELGAVMLRRK---FYPAATKYLLQAIEKWDGDD-Q-DLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       164 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~-p-~~~~~~~~lg~~~~~~g~~  238 (316)
                      .....+.+.|.+.++.+|.+.++.+++|.++.+.+   +.++++..+++.++.    + | +..+++|++|..+++.|+|
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----~~p~~~rd~lY~LAv~~~kl~~Y   87 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEY   87 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHccCH
Confidence            34455555666665555556666666666666655   444566666665552    3 4 3455555555555555555


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHH
Q 021175          239 DKGISQFETAVKLQPGYVTAWNN  261 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~  261 (316)
                      ++|.++++++++++|++.++...
T Consensus        88 ~~A~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           88 EKALKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHH
Confidence            55555555555555555554443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.98  E-value=1.2e-08  Score=78.73  Aligned_cols=100  Identities=16%  Similarity=0.092  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHH
Q 021175          200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG---KLDKGISQFETAVKLQ-P-GYVTAWNNLGDAYEKKKDLKS  274 (316)
Q Consensus       200 ~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~  274 (316)
                      ...+.+.|.+.++    .++.+.++.+++|.++.+.+   +.++++..+++.++.+ | +..+++|++|..|+++|+|++
T Consensus        14 l~~~~~~y~~e~~----~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           14 LLKFEKKFQSEKA----AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHH----TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHc----cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence            4567788888888    57889999999999999988   7779999999999999 7 679999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175          275 ALKAFEEVLLFDPNNKVARPRRDALKDRV  303 (316)
Q Consensus       275 A~~~~~~al~~~p~~~~a~~~l~~l~~~~  303 (316)
                      |+++++++++++|++.++......+..+.
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999998877776554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.97  E-value=1e-08  Score=74.66  Aligned_cols=81  Identities=27%  Similarity=0.362  Sum_probs=62.1

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAW  259 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  259 (316)
                      .+..++.+|..++..|+|+.|+.+|++|++..+.   ..+..+.++.++|.+++++|++++|+..++++++++|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            3456778888888888888888888888876432   1245677788888888888888888888888888888887777


Q ss_pred             HHHH
Q 021175          260 NNLG  263 (316)
Q Consensus       260 ~~lg  263 (316)
                      .+++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            7776

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.96  E-value=8.3e-09  Score=75.11  Aligned_cols=81  Identities=21%  Similarity=0.143  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175          222 AQVYNALGVSYVREGKLDKGISQFETAVKLQ-------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP  294 (316)
Q Consensus       222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  294 (316)
                      +.-.+.+|..++..|+|++|+.+|++|++..       +....++.++|.++.++|++++|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4567889999999999999999999999863       345889999999999999999999999999999999999988


Q ss_pred             HHHHHHhh
Q 021175          295 RRDALKDR  302 (316)
Q Consensus       295 ~l~~l~~~  302 (316)
                      +++.+...
T Consensus        85 n~~~~~~~   92 (104)
T 2v5f_A           85 NLKYFEYI   92 (104)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            88765554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.95  E-value=1.2e-08  Score=93.34  Aligned_cols=104  Identities=7%  Similarity=-0.043  Sum_probs=83.6

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc---HHHH
Q 021175          192 AVMLRRKFYPAATKYLLQAIEKWDG----DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-----PGY---VTAW  259 (316)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~  259 (316)
                      .-+..+|+|++|++.++++++...+    .+|.....+.++|.+|..+|+|++|++++++++++.     |++   ...+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3455788999999999999975432    466778889999999999999999999999999752     444   5678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhHHHH
Q 021175          260 NNLGDAYEKKKDLKSALKAFEEVLLF-----DPNNKVARPR  295 (316)
Q Consensus       260 ~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~  295 (316)
                      ++||.+|..+|++++|+..|++++++     .|+++.....
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~  415 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL  415 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            89999999999999999999999976     5666655543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.94  E-value=4e-08  Score=99.43  Aligned_cols=129  Identities=13%  Similarity=0.132  Sum_probs=103.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCC---------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 021175          162 VRRELDLSAKELQEQVRSGDA---------------------------SATEYFELGAVMLRRKFYPAATKYLLQAIEKW  214 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~---------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  214 (316)
                      ..|+++++++.|..+.+..++                           +...+..+|..+...|+|++|..+|.++-   
T Consensus      1146 ~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~--- 1222 (1630)
T 1xi4_A         1146 TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--- 1222 (1630)
T ss_pred             HcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---
Confidence            778888888888776654432                           23456678888889999999998888862   


Q ss_pred             CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------------CcHHHHHHHHHHHHHc
Q 021175          215 DGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP-------------------------GYVTAWNNLGDAYEKK  269 (316)
Q Consensus       215 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~lg~~~~~~  269 (316)
                               .|..+|.++.+.|++++|++.+++|...++                         .+++.+..++..|...
T Consensus      1223 ---------ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~ 1293 (1630)
T 1xi4_A         1223 ---------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDR 1293 (1630)
T ss_pred             ---------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHc
Confidence                     588899999999999999999999855443                         1344566788889999


Q ss_pred             CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          270 KDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       270 g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      |.+++|+..+++++.++|.+...+..++.++.+
T Consensus      1294 G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1294 GYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred             CCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence            999999999999999999998888888777654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.92  E-value=9.6e-08  Score=81.30  Aligned_cols=107  Identities=18%  Similarity=0.154  Sum_probs=91.3

Q ss_pred             cCCCCHHHHHHHHHHHHH-----cCC------hHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHc-----CCHHH
Q 021175          179 SGDASATEYFELGAVMLR-----RKF------YPAATKYLLQAIEKWDGDDQD--LAQVYNALGVSYVRE-----GKLDK  240 (316)
Q Consensus       179 ~~p~~~~~~~~lg~~~~~-----~g~------~~~A~~~~~~al~~~~~~~p~--~~~~~~~lg~~~~~~-----g~~~~  240 (316)
                      .+|++++.++=.|.....     .|+      ..+|...++++++    ++|+  +..+|..+|..|...     |+.++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle----LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ek  222 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD----LWPSYQEGAVWNVLTKFYAAAPESFGGGMEK  222 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH----HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH----hCCCcccCHHHHHHHHHHHhCCCccCCCHHH
Confidence            466777776666655432     233      4789999999999    6998  677999999999995     99999


Q ss_pred             HHHHHHHHHHhCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Q 021175          241 GISQFETAVKLQPGY-VTAWNNLGDAYEK-KKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       241 A~~~~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~  289 (316)
                      |.++|++|++++|+. ..+++.+|..+.. +|++++|.++++++++.+|..
T Consensus       223 A~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          223 AHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            999999999999975 9999999999988 599999999999999998874

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.92  E-value=4.2e-09  Score=96.38  Aligned_cols=109  Identities=10%  Similarity=0.035  Sum_probs=91.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc----CCCCccHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRS-----GDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKW----DGDDQDLAQVYNA  227 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~p~~~~~~~~  227 (316)
                      +..+|++++|++.+++++++     .|++   ...+.++|.+|..+|+|++|+.+++++++..    +..+|..+..+++
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            44789999999999999975     3444   5689999999999999999999999999864    3468889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHH
Q 021175          228 LGVSYVREGKLDKGISQFETAVKL-----QPGYV---TAWNNLGDAYEK  268 (316)
Q Consensus       228 lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~  268 (316)
                      ||.+|..+|++++|+..|++|+++     .|+++   +.+.+++.+...
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999985     46664   455667666544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.91  E-value=3e-08  Score=100.32  Aligned_cols=115  Identities=11%  Similarity=0.126  Sum_probs=93.2

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--------------------
Q 021175          157 IRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--------------------  216 (316)
Q Consensus       157 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------------  216 (316)
                      ++.....|++++|+..|.++     ++++.+..+|.++.+.|+|++|+++|..+.+..+.                    
T Consensus      1112 AKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A         1112 AKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH
Confidence            34445899999999999875     88999999999999999999999999887764210                    


Q ss_pred             ----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          217 ----DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       217 ----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                          ..++ ...+.++|..+...|+|++|..+|+++        ..|..+|.+|.++|++++|+++++++...
T Consensus      1187 e~fI~~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1187 EEFINGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred             HHHHhCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence                1122 234567899999999999999999886        47888999999999999999999988443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.91  E-value=2.8e-08  Score=76.21  Aligned_cols=92  Identities=18%  Similarity=0.105  Sum_probs=80.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH---
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLR----RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR---  234 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~---  234 (316)
                      ..+..++|++.|+++.+.  .++.+++++|.+|..    .+++++|+++|+++.+    .  .++.+++++|.+|..   
T Consensus        37 ~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----~--g~~~a~~~Lg~~y~~G~g  108 (138)
T 1klx_A           37 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG----L--NDQDGCLILGYKQYAGKG  108 (138)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----T--TCHHHHHHHHHHHHHTSS
T ss_pred             cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc----C--CCHHHHHHHHHHHHCCCC
Confidence            556778899999999987  689999999999999    8999999999999998    2  678899999999999   


Q ss_pred             -cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175          235 -EGKLDKGISQFETAVKLQPGYVTAWNNLG  263 (316)
Q Consensus       235 -~g~~~~A~~~~~~al~~~p~~~~~~~~lg  263 (316)
                       .+++++|+++|++|.+.  .++.+..+++
T Consensus       109 ~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A          109 VVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             SCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             CCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence             99999999999999987  4556666554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.87  E-value=6.4e-09  Score=95.13  Aligned_cols=97  Identities=13%  Similarity=0.102  Sum_probs=84.0

Q ss_pred             HhhhHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC----CCCccHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRS-----GDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWD----GDDQDLAQVYNALG  229 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----~~~p~~~~~~~~lg  229 (316)
                      ..|+|++|+..+++++++     .|++   ...+.++|.+|..+|+|++|+.+++++++...    ..+|+.+..+++||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            467899999999999984     4444   56889999999999999999999999998643    36888999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh-----CCCcHHH
Q 021175          230 VSYVREGKLDKGISQFETAVKL-----QPGYVTA  258 (316)
Q Consensus       230 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~  258 (316)
                      .+|..+|++++|+..|++|+++     .|+++..
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            9999999999999999999986     4666554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.84  E-value=1.7e-08  Score=71.84  Aligned_cols=72  Identities=8%  Similarity=0.009  Sum_probs=67.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175          180 GDASATEYFELGAVMLRRKF---YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       180 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  255 (316)
                      +|++++.+..+|.+++..++   .++|..+++++++    .+|+++.+.+.+|..++..|+|++|+.+++++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~----~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ----LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            68999999999999987666   7999999999999    699999999999999999999999999999999999984

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.74  E-value=6e-08  Score=87.98  Aligned_cols=130  Identities=11%  Similarity=0.073  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN  226 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~  226 (316)
                      ++.++|..+.     ..|.|++|...|.++        ..|..+|.++.+.|+|++|++.++++.         ++.+|.
T Consensus       124 a~~~IGd~~~-----~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~---------~~~~Wk  181 (449)
T 1b89_A          124 HIQQVGDRCY-----DEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN---------STRTWK  181 (449)
T ss_dssp             ------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT---------CHHHHH
T ss_pred             HHHHHHHHHH-----HcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC---------CchhHH
Confidence            4444555554     778888888888865        357788888888888888888888772         356777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      ..+.++...|+++.|..+... +..+|++   ...+..+|.+.|++++|+..+++++.+++.+...+..++.++.+
T Consensus       182 ~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          182 EVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            778888888888888776664 3344443   44678899999999999999999999999999999999887755

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.72  E-value=3.4e-07  Score=88.27  Aligned_cols=190  Identities=9%  Similarity=-0.009  Sum_probs=139.1

Q ss_pred             hhhHHHHHHHH-hhccchHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc--
Q 021175          104 GSSSWLISARV-ANASENVQMD-AVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRS--  179 (316)
Q Consensus       104 ~~~~~~~~~~~-~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--  179 (316)
                      ....|...++. ...++...+. .+++.+....|.....       ++..+.+     ....|++++|.+.|++++..  
T Consensus       342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L-------wl~~a~~-----ee~~~~~e~aR~iyek~l~~l~  409 (679)
T 4e6h_A          342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL-------AFSLSEQ-----YELNTKIPEIETTILSCIDRIH  409 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH-------HHHHHHH-----HHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH-------HHHHHHH-----HHHhCCHHHHHHHHHHHHHHHH
Confidence            34556666554 3344555564 7787665554443311       1111222     23678899999999999875  


Q ss_pred             ---------CCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC-CH
Q 021175          180 ---------GDA-----------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG-KL  238 (316)
Q Consensus       180 ---------~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g-~~  238 (316)
                               .|.           ...+|...+....+.|+.+.|.+.|.+|++..   .+.....|...+.+....+ ++
T Consensus       410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~---~~~~~~lyi~~A~lE~~~~~d~  486 (679)
T 4e6h_A          410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK---KLVTPDIYLENAYIEYHISKDT  486 (679)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---GGSCTHHHHHHHHHHHTTTSCC
T ss_pred             HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHhCCCH
Confidence                     243           34578888888888999999999999999820   2334566777777766655 48


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHhhCCCCCC
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN---NKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l~~l~~~~~~~~~  308 (316)
                      +.|.+.|+++++..|+++..+...+......|+.+.|...|++++...|+   ....+......+...|+.+.
T Consensus       487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~  559 (679)
T 4e6h_A          487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS  559 (679)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999888999999999999999998883   55677778888888887643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.65  E-value=3.5e-08  Score=89.55  Aligned_cols=135  Identities=17%  Similarity=0.157  Sum_probs=119.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..|++++|++.++++     +++.+|.....++...|+++.|..+..+ +.    .+|+...   .+...|.+.|++++|
T Consensus       160 ~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~----~~ad~l~---~lv~~Yek~G~~eEa  226 (449)
T 1b89_A          160 HLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV----VHADELE---ELINYYQDRGYFEEL  226 (449)
T ss_dssp             TTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TT----TCHHHHH---HHHHHHHHTTCHHHH
T ss_pred             HhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HH----hCHhhHH---HHHHHHHHCCCHHHH
Confidence            899999999999999     4789999999999999999999887775 33    3676644   588899999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC-----CChhHHHHHHHHHhhCCCCCCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEK--KKDLKSALKAFEEVLLFDP-----NNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +..+++++.+++.+..++..+|.+|.+  .|+..+.++.|...+.+.|     ++...|..+..++...++++.|
T Consensus       227 i~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A  301 (449)
T 1b89_A          227 ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA  301 (449)
T ss_dssp             HHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            999999999999999999999999875  6788899999998888888     8899999999999998888754

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.62  E-value=4.9e-07  Score=87.17  Aligned_cols=146  Identities=17%  Similarity=0.031  Sum_probs=120.9

Q ss_pred             HhhhHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-------CCc-----------cHH
Q 021175          162 VRRELDLSA-KELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-------DDQ-----------DLA  222 (316)
Q Consensus       162 ~~~~~~~A~-~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------~~p-----------~~~  222 (316)
                      ..|+.++|. +.|++++...|.....|...+......|++++|.+.|+++++..+.       ..|           ...
T Consensus       355 ~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~  434 (679)
T 4e6h_A          355 EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT  434 (679)
T ss_dssp             HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence            567778897 9999999999999999999999999999999999999999984210       013           245


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 021175          223 QVYNALGVSYVREGKLDKGISQFETAVKL-QPGYVTAWNNLGDAYEKKK-DLKSALKAFEEVLLFDPNNKVARPRRDALK  300 (316)
Q Consensus       223 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~l~~l~  300 (316)
                      .+|...+....+.|+.+.|.+.|.+|++. .+.....|...+.+....| +.+.|...|+++++..|+++..+.......
T Consensus       435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe  514 (679)
T 4e6h_A          435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL  514 (679)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            67888888888899999999999999997 4455777877787776665 589999999999999999999887777777


Q ss_pred             hhCCCCC
Q 021175          301 DRVPLYK  307 (316)
Q Consensus       301 ~~~~~~~  307 (316)
                      ...|+.+
T Consensus       515 ~~~~~~~  521 (679)
T 4e6h_A          515 IYVNEES  521 (679)
T ss_dssp             HHHTCHH
T ss_pred             HhCCCHH
Confidence            6666543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.50  E-value=5.9e-06  Score=61.36  Aligned_cols=100  Identities=15%  Similarity=0.143  Sum_probs=75.2

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHhcCCCC-c-cHHHHHHHHHHHHHHcC
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPA---ATKYLLQAIEKWDGDD-Q-DLAQVYNALGVSYVREG  236 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~~~~~-p-~~~~~~~~lg~~~~~~g  236 (316)
                      .......+.+.|.+....++...++-+++|.++.+..+..+   ++..++..++    .+ | ..-++.+.+|..+++.|
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~----~~~p~~~Rd~lY~LAvg~yklg   88 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP----KGSKEEQRDYVFYLAVGNYRLK   88 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT----TSCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHhh
Confidence            45566677778888888788888888999998888877666   8888888777    34 5 56677777888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 021175          237 KLDKGISQFETAVKLQPGYVTAWNNLGDA  265 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~  265 (316)
                      +|++|.++++..++..|++.++......+
T Consensus        89 ~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           89 EYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            88888888888888888777766544433

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.49  E-value=4.1e-06  Score=74.07  Aligned_cols=131  Identities=14%  Similarity=0.034  Sum_probs=94.1

Q ss_pred             cchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHcCCCCHHHHHHHHHHHH
Q 021175          118 SENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQ--EQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~lg~~~~  195 (316)
                      .+..++.++++.+...+|.....+.....+++.   .+. ...............++  .++..+|..+.++..++..+.
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~---~~~-~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l  288 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIV---RHS-QHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSAL  288 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HHH-HSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---Hhc-cCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHH
Confidence            345777889998888888877655544333331   111 00000111111111222  233567999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVT  257 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  257 (316)
                      ..|++++|+..+++|++    ++|. ..+|..+|.++...|++++|++.|++|++++|....
T Consensus       289 ~~gd~d~A~~~l~rAl~----Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          289 VKGKTDESYQAINTGID----LEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHTCHHHHHHHHHHHHH----HCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             hCCCHHHHHHHHHHHHh----cCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            99999999999999999    4665 678889999999999999999999999999998753

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.47  E-value=4.5e-07  Score=77.23  Aligned_cols=89  Identities=6%  Similarity=-0.097  Sum_probs=80.5

Q ss_pred             hhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHH
Q 021175          163 RRELDLSAKELQEQVRSGDA--SATEYFELGAVMLRR-----KFYPAATKYLLQAIEKWDGDDQDL-AQVYNALGVSYVR  234 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~p~~-~~~~~~lg~~~~~  234 (316)
                      .+...+|...++++++++|+  +..+|..+|..|...     |+.++|.++|++|++    ++|+. ..+++..|..+..
T Consensus       176 l~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~----LnP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          176 PDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR----YCSAHDPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH----HCCTTCSHHHHHHHHHTTT
T ss_pred             HHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH----hCCCCCchHHHHHHHHHHH
Confidence            34567899999999999999  677999999999995     999999999999999    69975 9999999999988


Q ss_pred             -cCCHHHHHHHHHHHHHhCCCc
Q 021175          235 -EGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       235 -~g~~~~A~~~~~~al~~~p~~  255 (316)
                       +|++++|.++++++++.+|..
T Consensus       252 ~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          252 PLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             TTTCHHHHHHHHHHHHHCCGGG
T ss_pred             hcCCHHHHHHHHHHHHcCCCCC
Confidence             599999999999999988874

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.46  E-value=9.6e-07  Score=65.62  Aligned_cols=101  Identities=16%  Similarity=0.056  Sum_probs=86.3

Q ss_pred             ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHH
Q 021175          199 FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK---GISQFETAVKLQ-P-GYVTAWNNLGDAYEKKKDLK  273 (316)
Q Consensus       199 ~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~  273 (316)
                      ....+.+.|.+..+    .++....+.+++|.++.+.++..+   ++..+++.++.+ | ..-++.|.+|..+++.|+|+
T Consensus        16 ~l~~~~~~y~~e~~----~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           16 DLLKFEKKFQSEKA----AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHH----HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhc----cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence            34556677777776    366788999999999999888777   999999999987 5 56789999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175          274 SALKAFEEVLLFDPNNKVARPRRDALKDRV  303 (316)
Q Consensus       274 ~A~~~~~~al~~~p~~~~a~~~l~~l~~~~  303 (316)
                      +|+.+.+..++.+|++.++......+..++
T Consensus        92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998877776553

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.27  E-value=2.5e-05  Score=59.39  Aligned_cols=116  Identities=9%  Similarity=-0.000  Sum_probs=96.4

Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          178 RSGDASATEYFELGAVMLRRKFY------PAATKYLLQAIEKWDG----DDQDLAQVYNALGVSYVREGKLDKGISQFET  247 (316)
Q Consensus       178 ~~~p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~~~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  247 (316)
                      -..|++++.|........+.|+.      ++-.+.|++|+...|.    ........|...+.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            35789999999999999999999      9999999999997442    112345666666755 566999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175          248 AVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP  294 (316)
Q Consensus       248 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  294 (316)
                      ++++....+.+|...|....++|+.+.|.+.+.+++.+.|...+...
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            99998889999999999999999999999999999999998665543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.08  E-value=3.5e-05  Score=71.70  Aligned_cols=140  Identities=11%  Similarity=-0.089  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc--------------------------
Q 021175          166 LDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ--------------------------  219 (316)
Q Consensus       166 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p--------------------------  219 (316)
                      .+.....|++++...|..+..|...+..+...|+.++|.+.|++|+.. |...+                          
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~  273 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE  273 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence            345678999999999999999999999999999999999999999985 42100                          


Q ss_pred             ----------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCC
Q 021175          220 ----------DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK-DLKSALKAFEEVLLFDPN  288 (316)
Q Consensus       220 ----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~  288 (316)
                                .....|...+....+.++.+.|.+.|++| +..+.....|...+.+....| +.+.|...|+++++..|+
T Consensus       274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence                      01123344444445577899999999999 433345667777777766655 699999999999999999


Q ss_pred             ChhHHHHHHHHHhhCCCCC
Q 021175          289 NKVARPRRDALKDRVPLYK  307 (316)
Q Consensus       289 ~~~a~~~l~~l~~~~~~~~  307 (316)
                      .+..+..........|+.+
T Consensus       353 ~~~~~~~yid~e~~~~~~~  371 (493)
T 2uy1_A          353 STLLKEEFFLFLLRIGDEE  371 (493)
T ss_dssp             CHHHHHHHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHHHHHcCCHH
Confidence            8887776666666666543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.00  E-value=3.5e-05  Score=59.79  Aligned_cols=130  Identities=11%  Similarity=0.026  Sum_probs=74.4

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDASAT---------EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNAL  228 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~l  228 (316)
                      +..++.+.|+.|+.....++....++++         ++..+|++++..++|..|...|+++++.... -+.....+..+
T Consensus        28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~-l~k~~s~~~~~  106 (167)
T 3ffl_A           28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA-LSKTSKVRPST  106 (167)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC-C----------
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH-HhcCCCccccc
Confidence            4455667777777777766655444333         6667777777777777777777777764331 11111111111


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175          229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD  301 (316)
Q Consensus       229 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~  301 (316)
                      +.    ...+.       .... .+.+.+..|.++.||.++|++++|+..++.. -.....+.....|++++.
T Consensus       107 ~~----~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          107 GN----SASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLYK  166 (167)
T ss_dssp             ---------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHCC
T ss_pred             cc----cCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHhc
Confidence            10    00000       0011 1345688899999999999999999988653 334456677777777764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.97  E-value=4.2e-05  Score=59.36  Aligned_cols=98  Identities=9%  Similarity=0.002  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 021175          152 GTFFVIRQVLVRRELDLSAKELQEQVRSGD---ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNAL  228 (316)
Q Consensus       152 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~l  228 (316)
                      ...+.+...+.+++|.+|...|+++++...   ........++.           ........     ..+.+.+..+.+
T Consensus        65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~-----------~ss~p~s~-----~~~~e~Elkyki  128 (167)
T 3ffl_A           65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN-----------SASTPQSQ-----CLPSEIEVKYKL  128 (167)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------------------------------------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc-----------cCCCcccc-----cccchHHHHHHH
Confidence            345667778899999999999999987533   22221111110           00001111     235577899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175          229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY  266 (316)
Q Consensus       229 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  266 (316)
                      +.||.+.|++++|+..++.. -..-..+.+...||..|
T Consensus       129 a~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          129 AECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            99999999999999997653 22234577777777665

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.97  E-value=9.5e-05  Score=55.05  Aligned_cols=81  Identities=12%  Similarity=0.098  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 021175          222 AQVYNALGVSYVREGKL---DKGISQFETAVKLQPG-YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRD  297 (316)
Q Consensus       222 ~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  297 (316)
                      +.+.+++|.++.+.++.   .+++..+++.++.+|. .-++++.+|..+.++|+|++|+++.+..++.+|++..+.....
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            34555555555554433   3566666666666663 3566666777777777777777777777777777666666555


Q ss_pred             HHHhh
Q 021175          298 ALKDR  302 (316)
Q Consensus       298 ~l~~~  302 (316)
                      .+..+
T Consensus       120 ~Ie~k  124 (134)
T 3o48_A          120 MVEDK  124 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.91  E-value=0.00019  Score=54.19  Aligned_cols=84  Identities=12%  Similarity=0.095  Sum_probs=59.1

Q ss_pred             cHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 021175          220 DLAQVYNALGVSYVREGKL---DKGISQFETAVKLQP-GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR  295 (316)
Q Consensus       220 ~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  295 (316)
                      -...+.+++|.++.+..+.   .+++..+++.++..| ..-++.|.+|..++++|+|++|.++.+..++.+|+|.++...
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            3455666666666665443   357777777777777 346777888888888888888888888888888888777776


Q ss_pred             HHHHHhhC
Q 021175          296 RDALKDRV  303 (316)
Q Consensus       296 l~~l~~~~  303 (316)
                      ...+..+.
T Consensus       117 k~~Ie~~i  124 (144)
T 1y8m_A          117 KSMVEDKI  124 (144)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.88  E-value=0.00075  Score=62.66  Aligned_cols=135  Identities=8%  Similarity=-0.027  Sum_probs=101.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHH----------------------------------------HHHHcCChH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGA----------------------------------------VMLRRKFYP  201 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~----------------------------------------~~~~~g~~~  201 (316)
                      ..|+.++|...|++++.. |.+...+...+.                                        ...+.++.+
T Consensus       225 ~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~  303 (493)
T 2uy1_A          225 GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE  303 (493)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence            788999999999999999 987554443333                                        222456788


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175          202 AATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG-KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE  280 (316)
Q Consensus       202 ~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  280 (316)
                      .|...|++| +    ..+.....|...+.+-...+ +.+.|.+.|+++++..|+++..+...+......|+.+.|...|+
T Consensus       304 ~AR~i~~~A-~----~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e  378 (493)
T 2uy1_A          304 LFRKLFIEL-G----NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK  378 (493)
T ss_dssp             HHHHHHHHH-T----TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHh-h----CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            899999999 4    23334566766676666655 69999999999999999999988888888889999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          281 EVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       281 ~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      ++.    .....|......+...|+.
T Consensus       379 r~~----k~~~lw~~~~~fE~~~G~~  400 (493)
T 2uy1_A          379 RLE----KTSRMWDSMIEYEFMVGSM  400 (493)
T ss_dssp             HSC----CBHHHHHHHHHHHHHHSCH
T ss_pred             HHH----HHHHHHHHHHHHHHHCCCH
Confidence            872    3455555555555555543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.72  E-value=0.0038  Score=58.00  Aligned_cols=120  Identities=11%  Similarity=0.050  Sum_probs=99.8

Q ss_pred             hhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          163 RRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      .++.++|.+.|++..+.+- .+...|..+-..+.+.|++++|.+.+++..+.  ...| +...|..+=..|.+.|+.++|
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--g~~P-d~~tyn~lI~~~~~~g~~~~A  159 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF--GIQP-RLRSYGPALFGFCRKGDADKA  159 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC-ccceehHHHHHHHHCCCHHHH
Confidence            4568899999999877643 36788999999999999999999999998873  1234 466788888889999999999


Q ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          242 ISQFETAVKLQP-GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       242 ~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                      .+.|++..+..- -+...|..+-.+|.+.|+.++|.+.+++..+.
T Consensus       160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            999999887542 25677888999999999999999999998764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.71  E-value=0.0012  Score=49.18  Aligned_cols=97  Identities=8%  Similarity=0.049  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCCHHH
Q 021175          165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFY---PAATKYLLQAIEKWDGDDQ-DLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       165 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~p-~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      +.....+.|.+-. .+.-.+.+-+++|.++.+..+.   .+++..++..++    .+| ..-++++.+|..+++.|+|++
T Consensus        22 eL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~----~~~~~~Rd~LYyLAvg~yklgdY~~   96 (134)
T 3o48_A           22 QLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK----EAESRRRECLYYLTIGCYKLGEYSM   96 (134)
T ss_dssp             HHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCcchhHHHHHHHHHHHHHhhhHHH
Confidence            3444444554433 3334688999999999988665   478999999988    467 578899999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAY  266 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~  266 (316)
                      |.++.+..++..|++.++......+-
T Consensus        97 Ar~y~d~lL~~eP~N~QA~~Lk~~Ie  122 (134)
T 3o48_A           97 AKRYVDTLFEHERNNKQVGALKSMVE  122 (134)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            99999999999999988876655544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.68  E-value=0.0016  Score=60.60  Aligned_cols=145  Identities=10%  Similarity=-0.036  Sum_probs=112.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKF---------YPAATKYLLQAIEKWDGDDQDLAQVYNALGVS  231 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~---------~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~  231 (316)
                      +.|+.++|.+.|++..+.+- .+...|..+-.++...+.         .++|.+.|++..+.  ...| +...|..+-..
T Consensus        38 k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--G~~P-d~~tyn~lI~~  114 (501)
T 4g26_A           38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--KVVP-NEATFTNGARL  114 (501)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--TCCC-CHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--CCCC-CHHHHHHHHHH
Confidence            89999999999999887642 356667777666665443         68899999988773  1233 56678889999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHhhCCCCCCC
Q 021175          232 YVREGKLDKGISQFETAVKLQ-PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN-NKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       232 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |.+.|+.++|.+.+++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+..-. +...+..+-..+.+.|+.++|
T Consensus       115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A  194 (501)
T 4g26_A          115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV  194 (501)
T ss_dssp             HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence            999999999999999988753 235778888889999999999999999998875322 456677777777777776554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.65  E-value=0.0023  Score=48.21  Aligned_cols=81  Identities=9%  Similarity=0.030  Sum_probs=69.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 021175          181 DASATEYFELGAVMLRRKFY---PAATKYLLQAIEKWDGDDQ-DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV  256 (316)
Q Consensus       181 p~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  256 (316)
                      ....++-++++.++.+..+.   .+++..++..++    ..| ..-++.+.+|..+++.|+|++|.++.+..++..|++.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~----~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~  111 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  111 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH----HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            56789999999999998765   478999999988    355 6788999999999999999999999999999999998


Q ss_pred             HHHHHHHHH
Q 021175          257 TAWNNLGDA  265 (316)
Q Consensus       257 ~~~~~lg~~  265 (316)
                      ++......+
T Consensus       112 QA~~Lk~~I  120 (144)
T 1y8m_A          112 QVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            876655444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.0051  Score=59.58  Aligned_cols=119  Identities=13%  Similarity=0.177  Sum_probs=86.6

Q ss_pred             hhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--Hc-CChHHHHHHHHHHHHhc----CCCC----------ccHHHH
Q 021175          163 RRE-LDLSAKELQEQVRSGDASATEYFELGAVML--RR-KFYPAATKYLLQAIEKW----DGDD----------QDLAQV  224 (316)
Q Consensus       163 ~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~-g~~~~A~~~~~~al~~~----~~~~----------p~~~~~  224 (316)
                      .++ ++.|+..+++..+.+|..... +..+.+..  .. .+--+|++...++++..    ....          |.....
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            344 688999999999999865432 22222222  11 23446778787777521    0011          222334


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 021175          225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEV  282 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  282 (316)
                      +...+..+..+|+++-|++..++|+...|.....|+.|+.+|..+|+++.|+-.++.+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            5556777888999999999999999999999999999999999999999999887766

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.95  E-value=0.0058  Score=56.46  Aligned_cols=81  Identities=14%  Similarity=0.082  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          223 QVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       223 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      .++..||.+......++.|..+|++|..++|++...++.||.+....|+.-+|+-+|-+++......+.+..++..+..+
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            46677899999999999999999999999999999999999999999999999999999998887789999999888765


Q ss_pred             C
Q 021175          303 V  303 (316)
Q Consensus       303 ~  303 (316)
                      .
T Consensus       233 ~  233 (497)
T 1ya0_A          233 A  233 (497)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.68  E-value=0.017  Score=51.75  Aligned_cols=89  Identities=21%  Similarity=0.250  Sum_probs=67.1

Q ss_pred             HcCChHHHHHHHHHHHHhcCC-CCc-----------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDG-DDQ-----------------DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVT  257 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~-~~p-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  257 (316)
                      ..|+.++|.+.+++|+.++.. .-+                 ....+...++..+...|++++|+..+++++..+|-+-.
T Consensus       127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~  206 (388)
T 2ff4_A          127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP  206 (388)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            445666666666666665432 000                 11223445677788899999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175          258 AWNNLGDAYEKKKDLKSALKAFEEVLL  284 (316)
Q Consensus       258 ~~~~lg~~~~~~g~~~~A~~~~~~al~  284 (316)
                      ++..+-.++...|+..+|++.|+++.+
T Consensus       207 ~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          207 LWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999888755

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.61  E-value=0.03  Score=42.56  Aligned_cols=87  Identities=11%  Similarity=0.046  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175          167 DLSAKELQEQVRSGDAS--------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       167 ~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~  238 (316)
                      ++-.+.|++++..-|..        ...|...+.. ...+|.++|.+.|+.++..    +...+.+|...|..-.++|+.
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~----hKkFAKiwi~~AqFEiRqgnl  110 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN----CKKFAFVHISFAQFELSQGNV  110 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH----CTTBHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHcccH
Confidence            77778888988876642        4566667655 5669999999999999994    556699999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHH
Q 021175          239 DKGISQFETAVKLQPGYVTA  258 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~  258 (316)
                      +.|.+.+.+|+...|...+.
T Consensus       111 ~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A          111 KKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHHHHHHHHHHHTTCBCHHH
T ss_pred             HHHHHHHHHHhccCCCcHHH
Confidence            99999999999999987554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.55  E-value=0.11  Score=40.70  Aligned_cols=48  Identities=15%  Similarity=0.028  Sum_probs=41.7

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIE  212 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  212 (316)
                      .+..|+++.|.+..++.     ++...|..+|......|+++-|+.+|+++-.
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            34789999999887764     6788999999999999999999999998755

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.027  Score=51.20  Aligned_cols=104  Identities=14%  Similarity=-0.011  Sum_probs=84.5

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc----
Q 021175          182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP--GY----  255 (316)
Q Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~----  255 (316)
                      ....++..+|..|...|++++|.+.|.++...... .......+...-.++...+++..+...++++-....  .+    
T Consensus       129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~  207 (429)
T 4b4t_R          129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR  207 (429)
T ss_dssp             CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence            35668899999999999999999999999886553 456778888889999999999999999999876532  22    


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175          256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLFD  286 (316)
Q Consensus       256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  286 (316)
                      .......|.++...++|.+|...|..+....
T Consensus       208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            2344566778888999999999998887653

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.38  E-value=0.016  Score=53.53  Aligned_cols=79  Identities=22%  Similarity=0.197  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDA  265 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  265 (316)
                      ++..+|++......++.|..+|.+|..    ..|++...|+.||.+....|+.-+|+-+|-+++......+.+..|+...
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~----~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~  229 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQ----LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHH----hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence            566788888888888888888888888    5888888888888888888888888888888887766677777777766


Q ss_pred             HHH
Q 021175          266 YEK  268 (316)
Q Consensus       266 ~~~  268 (316)
                      +.+
T Consensus       230 f~~  232 (497)
T 1ya0_A          230 LSK  232 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.29  E-value=0.095  Score=43.93  Aligned_cols=121  Identities=11%  Similarity=-0.016  Sum_probs=84.5

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      .++.|+.+++++..+..++.+|.+++....+...+.-.|+|+.|.+-++.+.+    ++|.....-..+-...       
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~----l~p~~~~~a~~yr~lI-------   75 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK----LFPEYLPGASQLRHLV-------   75 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCGGGHHHHHHHHHHH-------
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCchhhHHHHHHHHHH-------
Confidence            45889999999999999999999999999999999999999999999999999    5776543321111110       


Q ss_pred             HHHHHHHHHHHh--CC---CcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 021175          240 KGISQFETAVKL--QP---GYVT---AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV  291 (316)
Q Consensus       240 ~A~~~~~~al~~--~p---~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  291 (316)
                      .|+..=++.+.-  .|   ..+.   ....-+......|+.++|.+.-.++++..|..+.
T Consensus        76 ~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G  135 (273)
T 1zbp_A           76 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  135 (273)
T ss_dssp             HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence            111111111111  11   1222   2333455566789999999999999998876543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.09  E-value=0.2  Score=44.71  Aligned_cols=99  Identities=18%  Similarity=0.060  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc----HH
Q 021175          187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDD--QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ---PGY----VT  257 (316)
Q Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~----~~  257 (316)
                      -..+|..|+..|+|.+|.+.+.+..+.....+  ....+++..-..+|...|++.++...+.+|....   +.+    +.
T Consensus       102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~  181 (394)
T 3txn_A          102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA  181 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence            44899999999999999999999988765422  3456777888899999999999999999987653   122    34


Q ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 021175          258 AWNNLGDAYE-KKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       258 ~~~~lg~~~~-~~g~~~~A~~~~~~al~~  285 (316)
                      ....-|..+. ..++|.+|...|-++.+-
T Consensus       182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          182 LDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            5566788888 899999999999888743

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.84  E-value=0.14  Score=39.70  Aligned_cols=120  Identities=12%  Similarity=0.024  Sum_probs=82.9

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      +-.+|+.++-.-.=   .-|..++--..++..++-.|+|..|.-++.         .-+.....+.-+.||.+.++|..|
T Consensus        14 kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~---------~lNT~Ts~YYk~LCy~klKdYkkA   81 (242)
T 3kae_A           14 RYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLH---------KLNTCTSKYYESLCYKKKKDYKKA   81 (242)
T ss_dssp             HTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHH---------TCCBHHHHHHHHHHHHHTTCHHHH
T ss_pred             hcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHH---------hcchHHHHHHHHHHHHHHHHHHHH
Confidence            34455554432222   223333556678888999999998876652         334455666678899999999999


Q ss_pred             HHHHHHHHH--h---------------CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 021175          242 ISQFETAVK--L---------------QPGYVT-AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR  293 (316)
Q Consensus       242 ~~~~~~al~--~---------------~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  293 (316)
                      +..++..+.  .               +|.+.+ .+..+|.+.-+.|+.++|+.++.......|-.+..-
T Consensus        82 ~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A           82 IKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             HHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence            999999993  2               233333 455678999999999999999999998887655443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.63  E-value=0.11  Score=46.34  Aligned_cols=85  Identities=7%  Similarity=0.050  Sum_probs=70.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc
Q 021175          162 VRRELDLSAKELQEQVRSGDAS----------------------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ  219 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p  219 (316)
                      ..++.+.+...+++++......                      ..+...++..+...|++++|+..+++++.    .+|
T Consensus       127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~----~~P  202 (388)
T 2ff4_A          127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF----EHP  202 (388)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HST
T ss_pred             hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC
Confidence            4567788888888888753211                      13445667788899999999999999999    699


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          220 DLAQVYNALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       220 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      .+..++..+-.++...|+..+|++.|++.-+
T Consensus       203 ~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          203 YREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999988765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.39  E-value=0.048  Score=52.85  Aligned_cols=108  Identities=12%  Similarity=-0.005  Sum_probs=78.9

Q ss_pred             cCC-hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--------CCCc---------
Q 021175          197 RKF-YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV---REGKLDKGISQFETAVKL--------QPGY---------  255 (316)
Q Consensus       197 ~g~-~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--------~p~~---------  255 (316)
                      .++ ++.|++.+++..+    .+|.....+ ..+.+..   ...+--+|++.+.++++.        .+.+         
T Consensus       261 t~~~~~~a~~~le~L~~----~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~  335 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTK----KDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNC  335 (754)
T ss_dssp             CGGGHHHHHHHHHHHHH----HCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHh----hCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCc
Confidence            445 5889999999988    477554332 2222221   123455788888887742        2232         


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          256 -VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       256 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                       ...+..-+..+...|+++-|+++.++++...|.+-..|..|+.+|..+|+|+.|
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~A  390 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKA  390 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHH
Confidence             234445567777899999999999999999999999999999999999999865

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.37  E-value=0.19  Score=48.81  Aligned_cols=107  Identities=17%  Similarity=0.122  Sum_probs=63.7

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHcC
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG----DDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~p~~~~~~~~lg~~~~~~g  236 (316)
                      +..|++++|.+..+     ..++...|..+|..+.+.++++.|+++|.++-....-    ....+.+....++......|
T Consensus       663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~  737 (814)
T 3mkq_A          663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG  737 (814)
T ss_dssp             HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            36777777776543     3467889999999999999999999999986331000    01122233344555556666


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175          237 KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE  280 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  280 (316)
                      +++.|...|.+.     ++   ....-.+|.+.|++++|...-+
T Consensus       738 ~~~~A~~~~~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~  773 (814)
T 3mkq_A          738 KFNLAFNAYWIA-----GD---IQGAKDLLIKSQRFSEAAFLGS  773 (814)
T ss_dssp             CHHHHHHHHHHH-----TC---HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHc-----CC---HHHHHHHHHHcCChHHHHHHHH
Confidence            666666554332     01   1112334566666666665544

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.33  E-value=0.092  Score=48.36  Aligned_cols=128  Identities=13%  Similarity=0.074  Sum_probs=63.3

Q ss_pred             HHhhhHHHHHHHHHHHHH-----------cCCCCHHHHHHHHHHHHHcCChHHHH----------HHHHHHHHhcC--CC
Q 021175          161 LVRRELDLSAKELQEQVR-----------SGDASATEYFELGAVMLRRKFYPAAT----------KYLLQAIEKWD--GD  217 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~lg~~~~~~g~~~~A~----------~~~~~al~~~~--~~  217 (316)
                      +++++++++.+.-...+.           .++-.+.+|+..+.++...|+..+..          ..+..+++...  ..
T Consensus       147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D  226 (523)
T 4b4t_S          147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD  226 (523)
T ss_dssp             --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence            377888888776655441           23345678888888888877766532          23333333211  12


Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 021175          218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY-------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK  290 (316)
Q Consensus       218 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  290 (316)
                      ....+..++.+=..|...+.|++|.....++.  .|..       ...++.+|.++.-+++|.+|.+++..|++..|.+.
T Consensus       227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            33557778888999999999999999999985  4432       45677899999999999999999999999888654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.25  E-value=0.077  Score=44.48  Aligned_cols=57  Identities=21%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175          195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  255 (316)
                      .+.|+.++|++.....++    .+|.++.....+-..+.-.|+++.|.+.++.+.+++|+.
T Consensus         8 l~~g~L~~al~~~~~~VR----~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIK----ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHH----TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HhCCCHHHHHHHHHHHHH----hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            344555555555555555    355555555555555555555555555555555555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.23  E-value=0.34  Score=47.04  Aligned_cols=82  Identities=20%  Similarity=0.194  Sum_probs=54.9

Q ss_pred             HHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHH--
Q 021175          193 VMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL--------QPGYVTAWNNL--  262 (316)
Q Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l--  262 (316)
                      .....|++++|.+..+         ..++...|.++|..+.+.|+++.|+++|.++-+.        ..++.+....+  
T Consensus       661 ~~l~~~~~~~A~~~~~---------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~  731 (814)
T 3mkq_A          661 LALKVGQLTLARDLLT---------DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAK  731 (814)
T ss_dssp             HHHHHTCHHHHHHHHT---------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHH---------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHH
Confidence            3456778887776632         3355689999999999999999999999886321        13333322222  


Q ss_pred             ----------H-HHHHHcCCHHHHHHHHHHHH
Q 021175          263 ----------G-DAYEKKKDLKSALKAFEEVL  283 (316)
Q Consensus       263 ----------g-~~~~~~g~~~~A~~~~~~al  283 (316)
                                + .+|.+.|++++|++.|.+.-
T Consensus       732 ~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          732 DAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             HHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHcCchHHHHHHHHHcCCHHHHHHHHHHcC
Confidence                      2 35566788888887775543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.67  E-value=0.63  Score=42.29  Aligned_cols=102  Identities=14%  Similarity=0.060  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCc---
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD--QDLAQVYNALGVSYVREGKLDKGISQFETAVK---LQPGY---  255 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~---  255 (316)
                      +.....|+.++...|++.+|.+.+.....-.....  ....+.+.....+|...+++.+|...++++..   ..+..   
T Consensus       137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence            45667889999999999999999888765322212  23466777888889999999999999988743   22333   


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175          256 -VTAWNNLGDAYEKKKDLKSALKAFEEVLLF  285 (316)
Q Consensus       256 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  285 (316)
                       ...+...|.++...++|.+|..+|.++.+.
T Consensus       217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence             345567788888899999999998888764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.06  E-value=1.6  Score=33.88  Aligned_cols=123  Identities=18%  Similarity=0.101  Sum_probs=70.8

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cC----------C--CCccHHH-HHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEK-WD----------G--DDQDLAQ-VYNA  227 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~----------~--~~p~~~~-~~~~  227 (316)
                      -.|+|..+.-.+.     +-+...+.+....++...++|..|+.++++.++- .+          .  .+|.+.+ .+..
T Consensus        45 yngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l  119 (242)
T 3kae_A           45 LNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL  119 (242)
T ss_dssp             HTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred             hcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Confidence            3555555554433     2344555555666666666666666666666621 00          0  2333333 3344


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------------------------------------------
Q 021175          228 LGVSYVREGKLDKGISQFETAVKLQPGY----------------------------------------------------  255 (316)
Q Consensus       228 lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------------------------------------  255 (316)
                      +|.++...|+.+||+.++......+|-.                                                    
T Consensus       120 ~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY  199 (242)
T 3kae_A          120 LGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKY  199 (242)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHH
Confidence            5666666666666666666655544221                                                    


Q ss_pred             -------HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175          256 -------VT-AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN  289 (316)
Q Consensus       256 -------~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  289 (316)
                             .. .-.+.+.-|..+|-.++...+|....+.+|..
T Consensus       200 ~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F  241 (242)
T 3kae_A          200 MEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF  241 (242)
T ss_dssp             HTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred             HHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence                   11 12245566778888888888888888888853

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.66  E-value=0.68  Score=47.39  Aligned_cols=106  Identities=9%  Similarity=-0.066  Sum_probs=80.3

Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-------------------CCccHHHHHHHHHHHHHHcC
Q 021175          176 QVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-------------------DDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       176 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~p~~~~~~~~lg~~~~~~g  236 (316)
                      .....|.++...+.+|.++...|++++|.++|+++..-...                   .....+.+|......+.+.|
T Consensus       834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~  913 (1139)
T 4fhn_B          834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES  913 (1139)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred             HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence            34456777778899999999999999999999987532110                   01123456777888889999


Q ss_pred             CHHHHHHHHHHHHHhCCC-cH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          237 KLDKGISQFETAVKLQPG-YV----TAWNNLGDAYEKKKDLKSALKAFEE  281 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~-~~----~~~~~lg~~~~~~g~~~~A~~~~~~  281 (316)
                      .++.+++..+.|++..+. +.    ..|.++=..+.+.|+|++|...+..
T Consensus       914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            999999999999987653 32    2567777788899999999877754

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.76  E-value=1  Score=45.13  Aligned_cols=86  Identities=13%  Similarity=0.004  Sum_probs=36.7

Q ss_pred             HhhhHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175          162 VRRELDLSAKELQEQVRS----GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK  237 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~  237 (316)
                      +.|+.++|.+.|++..+.    -..+...|+.+-..+.+.|+.++|.+.|++..+.  ...| +...|+.+=.++.+.|+
T Consensus       139 K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~--G~~P-DvvTYntLI~glcK~G~  215 (1134)
T 3spa_A          139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA--GLTP-DLLSYAAALQCMGRQDQ  215 (1134)
T ss_dssp             HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHHHHHTC
T ss_pred             hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCC-cHHHHHHHHHHHHhCCC
Confidence            445555555555432211    1223444555555555555555555555544442  0122 23333333334444444


Q ss_pred             -HHHHHHHHHHHHH
Q 021175          238 -LDKGISQFETAVK  250 (316)
Q Consensus       238 -~~~A~~~~~~al~  250 (316)
                       .++|.+.+++..+
T Consensus       216 ~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          216 DAGTIERCLEQMSQ  229 (1134)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence             2444455544444

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=92.70  E-value=1.2  Score=42.26  Aligned_cols=118  Identities=7%  Similarity=-0.042  Sum_probs=79.9

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175          162 VRRELDLSAKELQEQVRSGDASAT----EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK  237 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~  237 (316)
                      ..++.+.|...+.+..+..+-+..    ....++......+...++...+.+...    ...++.......+. ..+.|+
T Consensus       226 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~~~r~-Alr~~d  300 (618)
T 1qsa_A          226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM----RSQSTSLIERRVRM-ALGTGD  300 (618)
T ss_dssp             HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH----TCCCHHHHHHHHHH-HHHHTC
T ss_pred             HhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc----cCCChHHHHHHHHH-HHHCCC
Confidence            455778888888876654433322    222233333334546778888888766    23333333333444 456799


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175          238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL  284 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  284 (316)
                      ++.|..++++.-...+......|.+|..+..+|+.++|...|+++.+
T Consensus       301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            99999999776554345688899999999999999999999999875

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.52  E-value=2.3  Score=37.87  Aligned_cols=111  Identities=10%  Similarity=-0.090  Sum_probs=80.0

Q ss_pred             HHhhhHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--Ccc-HHHHHHHHHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGD------ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD--DQD-LAQVYNALGVS  231 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~p~-~~~~~~~lg~~  231 (316)
                      +..|+|.+|.+.+.+..+.-.      .-.+.+..-..+|...+++.++...+.++.......  +|. .+.....-|..
T Consensus       110 ~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~  189 (394)
T 3txn_A          110 FDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGIL  189 (394)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHH
Confidence            389999999999988876322      124677778888999999999999999998754332  332 35556667889


Q ss_pred             HH-HcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCC
Q 021175          232 YV-REGKLDKGISQFETAVKLQPGY-----VTAWNNLGDAYEKKKD  271 (316)
Q Consensus       232 ~~-~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~  271 (316)
                      +. ..++|.+|...|-++++.....     ..+...++.|-...++
T Consensus       190 ~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          190 HAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence            99 8999999999999998644322     2334445555555554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.19  E-value=1.3  Score=39.99  Aligned_cols=93  Identities=8%  Similarity=-0.004  Sum_probs=74.1

Q ss_pred             HhhhHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-Ccc-HHHHHHHHHHHHHHcC
Q 021175          162 VRRELDLSAKELQEQVRSGD---ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD-DQD-LAQVYNALGVSYVREG  236 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~p~-~~~~~~~lg~~~~~~g  236 (316)
                      +.|++++|.+.|.+......   ...+.+.....++...+++..+..++.++....... +|. ........|..+...+
T Consensus       143 ~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r  222 (429)
T 4b4t_R          143 QIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVR  222 (429)
T ss_dssp             HHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTS
T ss_pred             HcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            89999999999999877432   457888899999999999999999999998765432 222 2344556688888999


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 021175          237 KLDKGISQFETAVKLQPG  254 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~  254 (316)
                      +|.+|...|-+++.-...
T Consensus       223 ~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          223 NFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             CHHHHHHHHHHHHHHSCC
T ss_pred             hHHHHHHHHHHHhccCCc
Confidence            999999999998875543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=91.73  E-value=5.2  Score=40.15  Aligned_cols=105  Identities=10%  Similarity=0.091  Sum_probs=80.9

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Q 021175          181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-PGYVTAW  259 (316)
Q Consensus       181 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~  259 (316)
                      ...-..+..+-..|.+.|+.++|.+.+++..+.....-.-+...|+.+=..|.+.|+.++|.+.|++-.+.. .-+...|
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            344557888999999999999999999775541000122356788888889999999999999999998753 2256677


Q ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 021175          260 NNLGDAYEKKKD-LKSALKAFEEVLLF  285 (316)
Q Consensus       260 ~~lg~~~~~~g~-~~~A~~~~~~al~~  285 (316)
                      ..+-.++.+.|+ .++|.+.+++..+.
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            777788999998 47888999988774

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.34  E-value=1.7  Score=44.45  Aligned_cols=114  Identities=11%  Similarity=-0.020  Sum_probs=81.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Q 021175          188 FELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ---------------  252 (316)
Q Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------  252 (316)
                      ..+...+...+.++-+.+.    ..    .-|.++...+-+|.++...|++++|.++|+++-.--               
T Consensus       816 ~~l~~~l~~~~~~~~~~~l----~~----~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~  887 (1139)
T 4fhn_B          816 TELVEKLFLFKQYNACMQL----IG----WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQE  887 (1139)
T ss_dssp             HHHHHHHHHHSCTTHHHHH----HH----HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHH----hh----hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccc
Confidence            3455556677777766543    23    234445556889999999999999999998874210               


Q ss_pred             --------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-----HHHHHHHHHhhCCCCCCC
Q 021175          253 --------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV-----ARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       253 --------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~l~~l~~~~~~~~~A  309 (316)
                              ...+..|......+.+.|.++.+++..+.|++..+.+.+     .|.++=+....+|+|++|
T Consensus       888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A  957 (1139)
T 4fhn_B          888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA  957 (1139)
T ss_dssp             HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred             ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence                    112345667778899999999999999999987654332     456666677888898876

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.99  E-value=4.9  Score=36.36  Aligned_cols=92  Identities=13%  Similarity=-0.029  Sum_probs=70.2

Q ss_pred             HHHhhhHHHHHHHHHHHHHc-C-C----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-C-Cc-cHHHHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRS-G-D----ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-D-DQ-DLAQVYNALGV  230 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~-~-p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~-~p-~~~~~~~~lg~  230 (316)
                      +...|++.+|...++..... . .    ...+.+......+...+++.+|...++++...... . .| -....+...|.
T Consensus       147 ~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~  226 (445)
T 4b4t_P          147 KKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVK  226 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHH
Confidence            34899999999999987542 1 1    12567888889999999999999999997543211 1 22 23556777899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh
Q 021175          231 SYVREGKLDKGISQFETAVKL  251 (316)
Q Consensus       231 ~~~~~g~~~~A~~~~~~al~~  251 (316)
                      .+...++|.+|-.+|.++.+.
T Consensus       227 ~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          227 ISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhc
Confidence            999999999999999999864

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=88.42  E-value=1.6  Score=34.07  Aligned_cols=75  Identities=13%  Similarity=0.056  Sum_probs=50.2

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 021175          192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD  271 (316)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  271 (316)
                      ......|+++.|.+..++.         ++...|..+|......|+++-|+++|+++-+        +..+...|...|+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l---------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~   75 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL---------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGD   75 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTC
T ss_pred             HHHHhcCCHHHHHHHHHHh---------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCC
Confidence            4566778888887764322         4567888888888888888888888877633        2334455666777


Q ss_pred             HHHHHHHHHHHH
Q 021175          272 LKSALKAFEEVL  283 (316)
Q Consensus       272 ~~~A~~~~~~al  283 (316)
                      .++-.+.-+.+.
T Consensus        76 ~e~L~kla~iA~   87 (177)
T 3mkq_B           76 VNKLSKMQNIAQ   87 (177)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            665554444443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=88.40  E-value=16  Score=34.47  Aligned_cols=132  Identities=6%  Similarity=-0.072  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 021175          166 LDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQF  245 (316)
Q Consensus       166 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  245 (316)
                      ..++...+.+.....+++.......+. .+..|+++.|..++++.-.    .....+...+-+|.++...|+.++|...|
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~e~~~r~-Alr~~d~~~a~~~~~~l~~----~~~~~~r~~YW~~ra~~~~g~~~~a~~~~  342 (618)
T 1qsa_A          268 TDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLPM----EAKEKDEWRYWQADLLLERGREAEAKEIL  342 (618)
T ss_dssp             CHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSCT----TGGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHhccccCCChHHHHHHHHH-HHHCCCHHHHHHHHHHccc----cccccHhHHHHHHHHHHHcCCHHHHHHHH
Confidence            456666666665544444444444444 4567999999998876554    23456788899999999999999999999


Q ss_pred             HHHHHhC-------------C----------Cc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 021175          246 ETAVKLQ-------------P----------GY-----VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRD  297 (316)
Q Consensus       246 ~~al~~~-------------p----------~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  297 (316)
                      +++.+-.             |          ..     ...-...+..+...|....|...+....+..  ++.....++
T Consensus       343 ~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la  420 (618)
T 1qsa_A          343 HQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLA  420 (618)
T ss_dssp             HHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHH
T ss_pred             HHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHH
Confidence            9887521             0          00     0123455667788999999998888877532  233334455


Q ss_pred             HHHhhCC
Q 021175          298 ALKDRVP  304 (316)
Q Consensus       298 ~l~~~~~  304 (316)
                      .+....|
T Consensus       421 ~~a~~~~  427 (618)
T 1qsa_A          421 RYAFNNQ  427 (618)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHCC
Confidence            5444444

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.48  E-value=2.7  Score=38.69  Aligned_cols=70  Identities=10%  Similarity=-0.019  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD---DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  255 (316)
                      +..++.+-..|...+.|++|..+..++.  +|..   ++.....++.+|.++..+++|.+|.+++..|++..|.+
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            5677788889999999999999999885  2221   22346778889999999999999999999999987754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.65  E-value=6.3  Score=39.40  Aligned_cols=94  Identities=13%  Similarity=0.034  Sum_probs=56.0

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Q 021175          190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL------------------  251 (316)
Q Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------  251 (316)
                      +...+...|.++-|.+    .+.    .-|.++..-+-+|.++...|++++|.++|++|-.-                  
T Consensus       816 l~~~L~~~~~~~~a~e----L~~----~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll  887 (950)
T 4gq2_M          816 LVEKLFLFKQYNACMQ----LIG----WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA  887 (950)
T ss_dssp             HHHHHHHTTCHHHHHH----HGG----GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHH
T ss_pred             HHHHHHHhcHHHHHHH----HHh----hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhcc
Confidence            4455556666654432    223    23334444466777777777777777777655410                  


Q ss_pred             ---CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChh
Q 021175          252 ---QPG--YVTAWNNLGDAYEKKKDLKSALKAFEEVLLF-DPNNKV  291 (316)
Q Consensus       252 ---~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~  291 (316)
                         .++  ....|.....++.+.|-++.+++..+.|++. .++++.
T Consensus       888 ~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~  933 (950)
T 4gq2_M          888 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED  933 (950)
T ss_dssp             HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred             CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence               011  1345666777888888888888888888864 344443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=84.84  E-value=13  Score=32.04  Aligned_cols=16  Identities=6%  Similarity=-0.062  Sum_probs=10.9

Q ss_pred             HHhhhHHHHHHHHHHH
Q 021175          161 LVRRELDLSAKELQEQ  176 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~a  176 (316)
                      ..+++|++|++.+...
T Consensus        46 ~~~k~y~eAidLL~~G   61 (336)
T 3lpz_A           46 SKQGNWAAAVDILASV   61 (336)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HhhcCHHHHHHHHHHH
Confidence            3677888887765553

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=83.78  E-value=9.4  Score=32.69  Aligned_cols=25  Identities=12%  Similarity=0.114  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHH
Q 021175          221 LAQVYNALGVSYVREGKLDKGISQF  245 (316)
Q Consensus       221 ~~~~~~~lg~~~~~~g~~~~A~~~~  245 (316)
                      ++..+..+|..|.+.|++.+|..+|
T Consensus       133 dp~LH~~~a~~~~~e~~~~~A~~H~  157 (312)
T 2wpv_A          133 DPYLHNTIGSKLLEGDFVYEAERYF  157 (312)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            4455555555555555555555554

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=82.44  E-value=2.7  Score=28.29  Aligned_cols=17  Identities=24%  Similarity=0.630  Sum_probs=8.8

Q ss_pred             HHcCCHHHHHHHHHHHH
Q 021175          233 VREGKLDKGISQFETAV  249 (316)
Q Consensus       233 ~~~g~~~~A~~~~~~al  249 (316)
                      -+.|+|++|+..|++++
T Consensus        30 D~~g~y~eAl~lY~~ai   46 (83)
T 2w2u_A           30 DKEGNAEEAITNYKKAI   46 (83)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHH
Confidence            34455555555554444

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=81.75  E-value=2.9  Score=28.09  Aligned_cols=18  Identities=28%  Similarity=0.660  Sum_probs=9.9

Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 021175          233 VREGKLDKGISQFETAVK  250 (316)
Q Consensus       233 ~~~g~~~~A~~~~~~al~  250 (316)
                      -+.|+|++|+..|+++++
T Consensus        22 D~~g~y~eAl~lY~~aie   39 (83)
T 2v6y_A           22 DKEGKVEDAITYYKKAIE   39 (83)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHH
Confidence            345666666665555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-10
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	7e-10
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	1e-09
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	8e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-08
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	6e-06
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	5e-07
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	5e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	5e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	6e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-04
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	3e-06
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	5e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-05
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-04
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	0.003
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	5e-04
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	9e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (170), Expect = 4e-14
 Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 4/131 (3%)

Query: 163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLA 222
           +  +DL+    +  +         Y  L   +  +     A      A+           
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS-- 307

Query: 223 QVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEV 282
              N L      +G +++ +  +  A+++ P +  A +NL    +++  L+ AL  ++E 
Sbjct: 308 --LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365

Query: 283 LLFDPNNKVAR 293
           +   P    A 
Sbjct: 366 IRISPTFADAY 376

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 8e-13
 Identities = 15/85 (17%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
              L  +   +     A +   +A+E       + A  ++ L     ++GKL + +  ++
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKD 271
            A+++ P +  A++N+G+  ++ +D
Sbjct: 364 EAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 3e-12
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 4/110 (3%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
            A  +  LG V   +     A  +  +A+      D +    Y  LG         D+ +
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAV 223

Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           + +  A+ L P +     NL   Y ++  +  A+  +   +   P+   A
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 1e-11
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           Y  LG V+   + +  A    + A  +      + A V+  L   Y  +G +D  I  + 
Sbjct: 206 YINLGNVLKEARIFDRA----VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
            A++LQP +  A+ NL +A ++K  +  A   +   L   P +
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 2e-11
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 188 FELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFET 247
            EL     +   + AA ++ +Q   +    + D   V   L   + +  +LD+       
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTL 58

Query: 248 AVKLQPGYVTAWNNLGDAY 266
           A+K  P    A++NLG+ Y
Sbjct: 59  AIKQNPLLAEAYSNLGNVY 77

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 1e-10
 Identities = 7/66 (10%), Positives = 17/66 (25%)

Query: 228 LGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287
           L     + G  +          + +P        L   + + + L  +       +  +P
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 288 NNKVAR 293
               A 
Sbjct: 65  LLAEAY 70

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 18/74 (24%), Positives = 34/74 (45%)

Query: 208 LQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE 267
                K      + A  ++ LG  +  +G++   I  FE AV L P ++ A+ NLG+  +
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214

Query: 268 KKKDLKSALKAFEE 281
           + +    A+ A+  
Sbjct: 215 EARIFDRAVAAYLR 228

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 4e-10
 Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 6/123 (4%)

Query: 171 KELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGV 230
           +EL            +  +LG +  ++    A  K    +                 LG 
Sbjct: 107 QELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY------ICQHCLVHLGD 160

Query: 231 SYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK 290
                 +  +  S +  A +L P     +N L      K D  + +  +   +       
Sbjct: 161 IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP 220

Query: 291 VAR 293
            A 
Sbjct: 221 AAS 223

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV 224
                 K                  LG +   R     A  Y   A +          Q 
Sbjct: 135 HTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAAQL----VPSNGQP 188

Query: 225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE 280
           YN L +    +G     I  +  ++ ++  +  A  NL  A  K  + +  +K   
Sbjct: 189 YNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKW 244

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 5/52 (9%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
                 A  L+     +     + +  ++ L+     ++++L+ D    + +
Sbjct: 6   AQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ---DLYQKMLVTDLEYALDK 54

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 13/106 (12%), Positives = 28/106 (26%), Gaps = 8/106 (7%)

Query: 203 ATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL 262
           + +YL QA         D+          +     L      ++  +     Y       
Sbjct: 5   SAQYLRQAEVL----KADMTDSKLGPAEVWTSRQALQD---LYQKMLVTDLEYALDKKVE 57

Query: 263 GDAYEKK-KDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK 307
            D +    K+  + L+   +       ++V       L+     Y 
Sbjct: 58  QDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYT 103

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.7 bits (133), Expect = 7e-10
 Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
           SA E  E G  +   + YP A     +AI +    +  +A  Y    + Y++  + ++ +
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQAL 58

Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
           +    A++L    V A   LG    + +    A+   +         ++ 
Sbjct: 59  ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 1e-09
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ---DLAQVYNALGVSYVREGKLD 239
           +A + FELG V      Y     ++ QA+ + D  +    D   V + L  +  ++G LD
Sbjct: 4   TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD 63

Query: 240 KGISQFETAVKLQPGYVTAWNNLG 263
           K +   +  ++L P +  A  NL 
Sbjct: 64  KALLLTKKLLELDPEHQRANGNLK 87

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 3e-09
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 3/120 (2%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD---DQDLAQVYNALGVSYVREGKLDK 240
           A +  ELG    ++K +  A K+  +A E    +     + A VY   G         +K
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALK 300
            I       +       A+  +G++Y K++  K A+  + + L       V +  + A K
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 223 QVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEV 282
           Q  NAL      EG+L + +     A+K  P   +  ++  +      D + A +   + 
Sbjct: 2   QWKNAL-----SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQS 56

Query: 283 LLFDPNNKVAR 293
           +   P      
Sbjct: 57  IKLFPEYLPGA 67

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 4/106 (3%)

Query: 194 MLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP 253
            L       A + L++AI+         A + ++       +G  ++   Q   ++KL P
Sbjct: 6   ALSEGQLQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 254 GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL 299
            Y+   + L    +  +  K   +      +   N ++ +      
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFN 107

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 219 QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKA 278
           +D  Q +   G+  ++EG L   +  FE AV+  P ++ AW  LG    + +    A+ A
Sbjct: 17  RDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISA 75

Query: 279 FEEVL 283
               L
Sbjct: 76  LRRCL 80

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 15/70 (21%), Positives = 33/70 (47%)

Query: 239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA 298
           ++ ++ +  A++LQPGY+ +  NLG +       + A++ F E L     ++  R    A
Sbjct: 223 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 282

Query: 299 LKDRVPLYKG 308
           + + +     
Sbjct: 283 MSENIWSTLR 292

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 8e-06
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 208 LQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE 267
           + A  +         +    LG+S +  G   + +  F  A+ +Q          G   E
Sbjct: 226 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 285

Query: 268 K-KKDLKSALKAFEE 281
                L+ AL    +
Sbjct: 286 NIWSTLRLALSMLGQ 300

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
              + FE G   L+    P A      A+++    D    + +  LG +     +    I
Sbjct: 18  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQELLAI 73

Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRD 297
           S     ++L+P   TA   L  ++  +   + A +   + L + P         +
Sbjct: 74  SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 128

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 4/145 (2%)

Query: 167 DLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAI----EKWDGDDQDLA 222
           ++  KE  EQ        T YF+ G  +     Y     +L        ++    +  L 
Sbjct: 5   EMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 64

Query: 223 QVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEV 282
             +  L + Y++  +  K +   + A+ L           G+A     + +SA   FE+V
Sbjct: 65  AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 124

Query: 283 LLFDPNNKVARPRRDALKDRVPLYK 307
           L  +P NK AR +    + +   + 
Sbjct: 125 LEVNPQNKAARLQIFMCQKKAKEHN 149

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 43.4 bits (101), Expect = 6e-06
 Identities = 9/66 (13%), Positives = 21/66 (31%)

Query: 214 WDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLK 273
             G D    +     G + +   + +     FE  +++ P    A   +    +K K+  
Sbjct: 90  ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHN 149

Query: 274 SALKAF 279
              +  
Sbjct: 150 ERDRRT 155

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 3e-07
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK-KKDLKSAL 276
                 VY+       R+ + ++       A++L     T W+      +  +KDL   +
Sbjct: 39  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 98

Query: 277 KAFEEVLLFDPNNKVARPRRDALKDRVPLYK 307
                ++   P N      R  L + +    
Sbjct: 99  NYITAIIEEQPKNYQVWHHRRVLVEWLRDPS 129

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 248 AVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP-RRDALKD 301
            +     +   ++      ++ +  + A K   + +  +  N      RR  LK 
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKS 89

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 5e-07
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 2/97 (2%)

Query: 209 QAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--PGYVTAWNNLGDAY 266
           Q+ +      +     Y    V       + KGI   E  +              L    
Sbjct: 23  QSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82

Query: 267 EKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV 303
            + K+ + ALK    +L  +P N  A+     +   +
Sbjct: 83  YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 165 ELDLSAKELQEQVRSGDASATEYFELGAVML---RRKFYPAATKYLLQAIEKWDGDDQDL 221
           +L    K+ Q +  +G  S +  FE    ++              L + + K  G  ++ 
Sbjct: 14  DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQ 71

Query: 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK-KKD 271
                 L V   R  + +K +      ++ +P    A        +  KKD
Sbjct: 72  RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 122

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 5e-07
 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 7/108 (6%)

Query: 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241
             A   +  G +   +K +  A        +         +++   +G  Y     + + 
Sbjct: 3   VEAISLWNEGVLAADKKDWKGALDAFSAVQD-------PHSRICFNIGCMYTILKNMTEA 55

Query: 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
              F  ++        A+   G  Y + +    A+K  +E L+    N
Sbjct: 56  EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 103

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 20/126 (15%), Positives = 34/126 (26%), Gaps = 20/126 (15%)

Query: 181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240
           D  +   F +G +    K    A K   ++I +         Q        Y +  K D 
Sbjct: 33  DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM----LYYQTEKYDL 88

Query: 241 GISQFETAVKLQPGY----------------VTAWNNLGDAYEKKKDLKSALKAFEEVLL 284
            I   + A+    G                      N+   Y KK++ K A +       
Sbjct: 89  AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148

Query: 285 FDPNNK 290
                +
Sbjct: 149 MKSEPR 154

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.1 bits (113), Expect = 5e-07
 Identities = 8/83 (9%), Positives = 17/83 (20%)

Query: 208 LQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE 267
                +W     +                   +   + +         +     L  A +
Sbjct: 228 AWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALD 287

Query: 268 KKKDLKSALKAFEEVLLFDPNNK 290
                K  L+ F  +   DP   
Sbjct: 288 PLLYEKETLQYFSTLKAVDPMRA 310

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 11/104 (10%)

Query: 196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY 255
           R K   +  +   + +E+ +   +       A+          +  +      +   P +
Sbjct: 4   RLKVKTSEEQAEAKRLER-EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDF 62

Query: 256 VTAWNN----------LGDAYEKKKDLKSALKAFEEVLLFDPNN 289
            T WN                E    +K+ L   E  L  +P +
Sbjct: 63  ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 189 ELGAVMLRRKF-YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFET 247
           E+ AV L+           + Q +      D + AQ+    GV Y   G      + F  
Sbjct: 3   EVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQ 62

Query: 248 AVKLQPGYVTAWNNLGDAY 266
           A+ ++P     +N LG   
Sbjct: 63  ALAIRPDMPEVFNYLGIYL 81

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 16/106 (15%), Positives = 34/106 (32%)

Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
           +  L   +  +K      K +L+   +    +Q    +      +   +  +++  +   
Sbjct: 140 FRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADAT 199

Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
               L          LG  Y    DL SA   F+  +  + +N V 
Sbjct: 200 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 17/156 (10%), Positives = 49/156 (31%), Gaps = 16/156 (10%)

Query: 164 RELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD------ 217
            + D+  K++ + +      + +   +G    + + +  A K   + +   +G       
Sbjct: 11  EDADVDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 66

Query: 218 ------DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD 271
                           +G   ++       +     A+++ P    A       ++  K+
Sbjct: 67  ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE 126

Query: 272 LKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK 307
              AL   ++     P +K  +     +K ++   K
Sbjct: 127 YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 162

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 9/48 (18%), Positives = 18/48 (37%)

Query: 232 YVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
           +    + D+ ++  + A ++ P        L    +K K  K   KA 
Sbjct: 121 WQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 1/67 (1%)

Query: 238 LDKGISQFETAVKLQP-GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRR 296
              G+       K            L     K  +   A +  + +   + NNK     +
Sbjct: 54  ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113

Query: 297 DALKDRV 303
             ++D++
Sbjct: 114 SMVEDKI 120

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 5e-06
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 4/145 (2%)

Query: 167 DLSAKELQEQVRSGDASATEYFELG----AVMLRRKFYPAATKYLLQAIEKWDGDDQDLA 222
           +++++E  EQ        T YF+ G    A++  +K           + E+         
Sbjct: 3   EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 62

Query: 223 QVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEV 282
             +  L + +++       I     A++L        +  G+A+    D + A   F++V
Sbjct: 63  ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 122

Query: 283 LLFDPNNKVARPRRDALKDRVPLYK 307
           L   PNNK A+ +    + R+    
Sbjct: 123 LQLYPNNKAAKTQLAVCQQRIRRQL 147

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 3e-05
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 4/119 (3%)

Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
             E  E G   L       A +   +AI+     D     +Y+    +Y ++G   K   
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQKAYE 58

Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR 302
                V L+P +   ++    A E     + A + +EE L  + NN   +     ++ R
Sbjct: 59  DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 6/147 (4%)

Query: 163 RREL-DLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD- 220
           ++ + D + +E  +          E+F+   +      Y  A  + +   E  D    D 
Sbjct: 2   KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 61

Query: 221 ----LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276
                      L   Y +     K I      +K+    V A   LG A      L+ A 
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 121

Query: 277 KAFEEVLLFDPNNKVARPRRDALKDRV 303
           +   +    +PNN   R   +   +++
Sbjct: 122 ENLYKAASLNPNNLDIRNSYELCVNKL 148

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 8/42 (19%), Positives = 15/42 (35%)

Query: 232 YVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLK 273
            +  G L++       A  L P  +   N+      K K+ +
Sbjct: 111 NMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 152

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 37.8 bits (86), Expect = 5e-04
 Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 14/64 (21%)

Query: 219 QDLAQVYNALGV--SYVREGKLDKGISQFETAVKLQPGYVT------------AWNNLGD 264
           +++   Y AL      +  G+ D+  +    A+++                      L +
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAE 63

Query: 265 AYEK 268
           A   
Sbjct: 64  ALAG 67

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 37.9 bits (86), Expect = 9e-04
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK 270
            +    LG    +E    +    FE A  L     +   NLG  Y + +
Sbjct: 2   PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQ 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.87
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.83
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.82
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.82
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.8
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.8
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.79
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.78
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.76
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.76
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.74
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.72
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.71
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.7
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.7
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.68
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.67
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.66
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.65
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.65
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.64
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.62
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.61
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.58
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.58
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.57
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.56
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.55
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.52
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.48
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.46
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.46
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.45
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.45
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.32
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.31
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.25
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.18
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.16
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.15
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.14
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.89
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.87
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.84
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.84
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.71
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.55
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.48
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.14
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	92.98
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	92.56
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	84.65
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	82.51
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	81.51

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.9e-21  Score=168.33  Aligned_cols=141  Identities=15%  Similarity=0.213  Sum_probs=136.4

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|+..|+++++.+|+++.++.++|.++...|++++|++.+++++.    ..|.+...+..+|.++...|++++
T Consensus       248 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~  323 (388)
T d1w3ba_         248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR----LCPTHADSLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc----cCCccchhhhHHHHHHHHCCCHHH
Confidence            3889999999999999999999999999999999999999999999999999    589999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      |++.|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++++++.+++.++.++||
T Consensus       324 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999886

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.7e-19  Score=156.81  Aligned_cols=182  Identities=16%  Similarity=0.150  Sum_probs=158.9

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++...|...|+.+...+|...       .++..+|..+.     ..|++++|+..++++++.+|+++..+..+|.++.
T Consensus        31 ~~g~~~~A~~~~~~al~~~P~~~-------~a~~~lg~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          31 QEGDLPNAVLLFEAAVQQDPKHM-------EAWQYLGTTQA-----ENEQELLAISALRRCLELKPDNQTALMALAVSFT   98 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHSCTTCH-------HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHH-----HcCChHHHHHHHHhhhcccccccccccccccccc
Confidence            56778888889987777666654       34445555555     8999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCC---------------------------------------------CCc--cHHHHHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDG---------------------------------------------DDQ--DLAQVYNAL  228 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~---------------------------------------------~~p--~~~~~~~~l  228 (316)
                      ..|++++|++.+++++...+.                                             .+|  .++.++..+
T Consensus        99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l  178 (323)
T d1fcha_          99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  178 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence            999999999999998874320                                             122  235678899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCC
Q 021175          229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKG  308 (316)
Q Consensus       229 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~  308 (316)
                      |.++...|++++|+..++++++.+|+++.+++++|.+|..+|++++|+++|+++++++|+++.++.++|.++...|++++
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  258 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE  258 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             C
Q 021175          309 V  309 (316)
Q Consensus       309 A  309 (316)
                      |
T Consensus       259 A  259 (323)
T d1fcha_         259 A  259 (323)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.3e-19  Score=154.67  Aligned_cols=178  Identities=15%  Similarity=0.169  Sum_probs=156.4

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML  195 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  195 (316)
                      ..++...|...++.+....+...       .++..++..+.     ..|++++|+..+++....+|..+..+..+|.++.
T Consensus       181 ~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (388)
T d1w3ba_         181 AQGEIWLAIHHFEKAVTLDPNFL-------DAYINLGNVLK-----EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHH-----TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHhCcccH-------HHHHHHhhhhh-----ccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHH
Confidence            34455555556654444444433       23333444444     8899999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175          196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA  275 (316)
Q Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  275 (316)
                      ..|++++|++.|+++++    .+|+++.++.++|.++...|++++|++.+++++...|.+...+..+|.++...|++++|
T Consensus       249 ~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  324 (388)
T d1w3ba_         249 EQGLIDLAIDTYRRAIE----LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HTTCHHHHHHHHHHHHH----TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHH
Confidence            99999999999999999    79999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          276 LKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       276 ~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      ++.|+++++++|+++.++..++.++...|++++|
T Consensus       325 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  358 (388)
T d1w3ba_         325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA  358 (388)
T ss_dssp             HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999765

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.4e-19  Score=157.81  Aligned_cols=142  Identities=13%  Similarity=0.085  Sum_probs=115.8

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK-FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ..+.+++|++.++++++.+|++..+|+++|.++...| ++++|+++++++++    .+|++..+|+++|.++..+|++++
T Consensus        55 ~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~----~~p~~~~a~~~~~~~~~~l~~~~e  130 (315)
T d2h6fa1          55 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE----EQPKNYQVWHHRRVLVEWLRDPSQ  130 (315)
T ss_dssp             HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred             hCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH----HHHhhhhHHHHHhHHHHhhccHHH
Confidence            6677788888888888888888888888888877765 47888888888888    588888888888888888888888


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK  307 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~  307 (316)
                      |++.++++++++|++..+|+++|.++...|++++|+.+++++++++|++..+|.+++.+....+.+.
T Consensus       131 Al~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         131 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence            8888888888888888888888888888888888888888888888888888888888777766653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3e-19  Score=132.58  Aligned_cols=112  Identities=21%  Similarity=0.251  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDA  265 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  265 (316)
                      -+...|+.++..|++++|+..|+++++    .+|+++.+|.++|.+|..+|++++|++.++++++++|+++.+++++|.+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~   80 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   80 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHH
Confidence            356789999999999999999999999    6999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175          266 YEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD  301 (316)
Q Consensus       266 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~  301 (316)
                      +..+|++++|+..|+++++++|+++.++..++.+..
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          81 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            999999999999999999999999999999998765

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.9e-18  Score=150.46  Aligned_cols=173  Identities=6%  Similarity=-0.007  Sum_probs=153.6

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRR-ELDLSAKELQEQVRSGDASATEYFELGAVM  194 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  194 (316)
                      ..+..+.|..+++.+..++|.....       +...|..+.     ..+ ++++|+..++++++.+|++..+|.++|.++
T Consensus        55 ~~e~~~~Al~~~~~ai~lnP~~~~a-------~~~r~~~l~-----~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          55 RDERSERAFKLTRDAIELNAANYTV-------WHFRRVLLK-----SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HTCCCHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHH-----HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hCCchHHHHHHHHHHHHHCCCChHH-------HHHHHHHHH-----HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence            3456677888998888888877633       334344433     444 699999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---
Q 021175          195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD---  271 (316)
Q Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---  271 (316)
                      ...|++++|++.++++++    .+|.+..+|.++|.++...|++++|++.++++++++|++..+|+++|.++...|+   
T Consensus       123 ~~l~~~~eAl~~~~kal~----~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILN----QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HhhccHHHHHHHHhhhhh----hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence            999999999999999999    6999999999999999999999999999999999999999999999999988776   


Q ss_pred             ---HHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          272 ---LKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       272 ---~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                         +++|+..+.++++++|++..++..++.+....+
T Consensus       199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~  234 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG  234 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred             hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Confidence               689999999999999999999999998877655

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.5e-18  Score=145.86  Aligned_cols=138  Identities=16%  Similarity=0.099  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHH
Q 021175          146 LGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVY  225 (316)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~  225 (316)
                      ..++..|..+.     ..|++++|++.|+++++++|+++.+++++|.++...|++++|++.|+++++    .+|+++.++
T Consensus        38 ~~~~~~G~~y~-----~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~  108 (259)
T d1xnfa_          38 QLLYERGVLYD-----SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAH  108 (259)
T ss_dssp             HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTHHH
T ss_pred             HHHHHHHHHHH-----HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH----HHhhhhhhH
Confidence            34555666666     899999999999999999999999999999999999999999999999999    699999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------------------------------------------------
Q 021175          226 NALGVSYVREGKLDKGISQFETAVKLQPGYVT------------------------------------------------  257 (316)
Q Consensus       226 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------------------------------------  257 (316)
                      +++|.++..+|++++|++.++++++.+|++..                                                
T Consensus       109 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (259)
T d1xnfa_         109 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ  188 (259)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999987622                                                


Q ss_pred             ----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175          258 ----------------------AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       258 ----------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  292 (316)
                                            +++++|.+|..+|++++|+.+|++++..+|++...
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  245 (259)
T d1xnfa_         189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  245 (259)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             HHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence                                  67889999999999999999999999999987543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-17  Score=144.98  Aligned_cols=143  Identities=17%  Similarity=0.212  Sum_probs=126.0

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175          161 LVRRELDLSAKELQEQVRSGDA--SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~  238 (316)
                      ...+.+.++++.++++++.+|+  ++.++..+|.++...|++++|+.+++++++    .+|+++.++.++|.++...|++
T Consensus       147 ~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~  222 (323)
T d1fcha_         147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS----VRPNDYLLWNKLGATLANGNQS  222 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc----cccccccchhhhhhcccccccc
Confidence            4567888999999999999886  467899999999999999999999999999    6999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH-----------HHHHHHHhhCCCCC
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR-----------PRRDALKDRVPLYK  307 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~-----------~~l~~l~~~~~~~~  307 (316)
                      ++|++.|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++...+           ..++.....+++.+
T Consensus       223 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d  302 (323)
T d1fcha_         223 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  302 (323)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             hhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999999999999999999999999999876654           44555655555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.7e-17  Score=133.99  Aligned_cols=128  Identities=19%  Similarity=0.244  Sum_probs=115.9

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ...|++++|++.|.+   ..|.++.+++++|.++...|++++|+++|+++++    ++|+++.+|+++|.++..+|++++
T Consensus        16 ~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~----ldp~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          16 ADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN----RDKHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH----HhhhhhhhHHHHHHHHHhhccHHH
Confidence            389999999999986   4667889999999999999999999999999999    699999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 021175          241 GISQFETAVKLQPGY----------------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR  295 (316)
Q Consensus       241 A~~~~~~al~~~p~~----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  295 (316)
                      |++.|++++...|.+                .++++++|.++..+|++++|.+.+++++++.|+.......
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~  159 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID  159 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHH
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHH
Confidence            999999999876543                5789999999999999999999999999999885444443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.6e-18  Score=143.55  Aligned_cols=138  Identities=20%  Similarity=0.224  Sum_probs=123.8

Q ss_pred             hhhHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175          163 RRELDLSAKELQEQVRSGD----ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL  238 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~  238 (316)
                      ..+.+.++..+++.+...+    ..+.+++++|.+|...|++++|++.|+++++    ++|+++.+++++|.++..+|++
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~----l~p~~~~a~~~lg~~~~~~g~~   87 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDMPEVFNYLGIYLTQAGNF   87 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTCH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhc----cCCCCHHHHhhhchHHHHHHHH
Confidence            3456677888888887533    4567999999999999999999999999999    6999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      ++|++.|+++++++|+++.+++++|.+|..+|++++|+..|+++++.+|++......++......+
T Consensus        88 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_          88 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999888777665554443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.2e-17  Score=130.52  Aligned_cols=102  Identities=21%  Similarity=0.222  Sum_probs=66.5

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      +..|+|++|+..|+++++.+|+++.+|.++|.++...|++++|++.|+++++    .+|++..++.++|.++..+|++++
T Consensus        21 ~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~----~~p~~~~a~~~~g~~~~~~g~~~e   96 (159)
T d1a17a_          21 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKYIKGYYRRAASNMALGKFRA   96 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHH----HcccchHHHHHHHHHHHHcCCHHH
Confidence            3666666666666666666666666666666666666666666666666666    466666666666666666666666


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAY  266 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~  266 (316)
                      |++.++++++++|++..++..++.+.
T Consensus        97 A~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          97 ALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            66666666666666666666655553

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.1e-17  Score=122.48  Aligned_cols=106  Identities=11%  Similarity=0.104  Sum_probs=100.8

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175          157 IRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       157 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g  236 (316)
                      +..++..|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++    .+|+++.+|+++|.++..+|
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD----LKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHH----hccchhhHHHHHHHHHHHcc
Confidence            34455999999999999999999999999999999999999999999999999999    69999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175          237 KLDKGISQFETAVKLQPGYVTAWNNLGDAY  266 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  266 (316)
                      ++++|+..|+++++++|+++.++..++.+.
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999999999999998765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.1e-17  Score=135.22  Aligned_cols=98  Identities=18%  Similarity=0.259  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDA  265 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  265 (316)
                      .+...|+.++..|+|++|+.+|+++++    .+|.++.+|.++|.+|...|++++|++.|++|++++|+++.+|+++|.+
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~----~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            344445555555555555555555555    3455555555555555555555555555555555555555555555555


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCC
Q 021175          266 YEKKKDLKSALKAFEEVLLFDP  287 (316)
Q Consensus       266 ~~~~g~~~~A~~~~~~al~~~p  287 (316)
                      |..+|++++|+..|+++++++|
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCc
Confidence            5555555555555555555444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-16  Score=125.01  Aligned_cols=113  Identities=20%  Similarity=0.297  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 021175          185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGD  264 (316)
Q Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  264 (316)
                      ..+...|+.++..|+|++|+.+|+++++    .+|+++.+|.++|.++..+|++++|++.|+++++++|++..+++++|.
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~   86 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   86 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccc----cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHH
Confidence            3466779999999999999999999999    699999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175          265 AYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD  301 (316)
Q Consensus       265 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~  301 (316)
                      ++..+|++++|+.+++++++++|+++.++..++.+..
T Consensus        87 ~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_          87 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999888876654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.70  E-value=1.2e-16  Score=124.00  Aligned_cols=120  Identities=17%  Similarity=0.137  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 021175          186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD------------QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP  253 (316)
Q Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  253 (316)
                      .+...|+.++..|+|++|+..|++++...+...            +....++.|+|.+|.++|++++|++.++++++++|
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p   98 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK   98 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence            456678888888888888888888887644211            11245788999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175          254 GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL  305 (316)
Q Consensus       254 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~  305 (316)
                      ++..+++++|.+|..+|++++|+.+|+++++++|++..+...+..+..++++
T Consensus        99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          99 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988877654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.7e-16  Score=124.24  Aligned_cols=120  Identities=19%  Similarity=0.203  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-----------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 021175          185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD-----------DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP  253 (316)
Q Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  253 (316)
                      ..+...|+.++..|+|++|+..|+++++..+..           .+....++.++|.+|.++|++++|+..++++++++|
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p   93 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS   93 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence            345567777777777777777777777754321           112345677788888888888888888888888888


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175          254 GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP  304 (316)
Q Consensus       254 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~  304 (316)
                      +++.+++++|.+|..+|++++|+.+|+++++++|+++.+...++.+..+++
T Consensus        94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888887777765544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=4.5e-16  Score=122.78  Aligned_cols=120  Identities=11%  Similarity=0.180  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhcC------------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 021175          187 YFELGAVMLRRKFYPAATKYLLQAIEKWD------------GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG  254 (316)
Q Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  254 (316)
                      +...|..+...|+|++|++.|+++++..+            ..+|....++.++|.++.++|++++|+..++++++++|+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            45567777777777777777777775321            146788889999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          255 YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       255 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      ++.+++++|.+|..+|++++|+..|+++++++|++..+...+..+...+...
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888766544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.67  E-value=7.5e-16  Score=121.39  Aligned_cols=123  Identities=20%  Similarity=0.214  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-----------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD-----------DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ  252 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  252 (316)
                      +..+...|+.++..|+|++|+..|++++...+..           .+....++.|+|.+|..+|++++|+..++++++++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            4456788999999999999999999999865431           12245678899999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          253 PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       253 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      |++..+++++|.++..+|++++|+.+|+++++++|+++.+...++.+...++.+
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999998887665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.5e-17  Score=119.54  Aligned_cols=102  Identities=15%  Similarity=0.092  Sum_probs=52.0

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhcCCCCccH--HHHHHHHHHHHHHc
Q 021175          161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK---FYPAATKYLLQAIEKWDGDDQDL--AQVYNALGVSYVRE  235 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~p~~--~~~~~~lg~~~~~~  235 (316)
                      ...+++++|++.|+++++.+|+++.+++++|.++...+   ++++|+..++++++    .+|..  ..+++++|.+|..+
T Consensus        10 ~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~----~~~~~~~~~~~~~Lg~~y~~~   85 (122)
T d1nzna_          10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP----KGSKEEQRDYVFYLAVGNYRL   85 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT----TSCHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh----ccCCchHHHHHHHHHHHHHHH
Confidence            35555555555555555555555555555555554422   23345555555554    23322  33455555555555


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175          236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAY  266 (316)
Q Consensus       236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  266 (316)
                      |++++|+++|+++++++|++..+...++.+.
T Consensus        86 g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          86 KEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            5555555555555555555555555444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.65  E-value=5.3e-16  Score=113.77  Aligned_cols=95  Identities=17%  Similarity=0.217  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 021175          185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGD  264 (316)
Q Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  264 (316)
                      ..++.+|..+...|++++|+..|+++++    .+|+++.++.++|.++...|++++|+..|+++++++|++..+++++|.
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~   92 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   92 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcc----cccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHH
Confidence            3467899999999999999999999999    699999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q 021175          265 AYEKKKDLKSALKAFEEVL  283 (316)
Q Consensus       265 ~~~~~g~~~~A~~~~~~al  283 (316)
                      +|..+|++++|++++++.+
T Consensus        93 ~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          93 SHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999876

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.6e-16  Score=123.47  Aligned_cols=116  Identities=13%  Similarity=0.156  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175          187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY  266 (316)
Q Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  266 (316)
                      +++.|..+...|+|++|++.|.++       .|.++.+++++|.+|..+|++++|++.|++|++++|+++.+|+++|.++
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i-------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            557799999999999999999753       3445789999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCC----------------hhHHHHHHHHHhhCCCCCCC
Q 021175          267 EKKKDLKSALKAFEEVLLFDPNN----------------KVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       267 ~~~g~~~~A~~~~~~al~~~p~~----------------~~a~~~l~~l~~~~~~~~~A  309 (316)
                      .++|++++|+..|++++...|.+                .+++++++.++..+|++++|
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A  139 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA  139 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999876654                25677899999999998765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.4e-16  Score=128.58  Aligned_cols=108  Identities=15%  Similarity=0.075  Sum_probs=95.3

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      ++..|++++|+..|+++++.+|+++.+|.++|.+|...|++++|+++|+++++    ++|+++.+|+++|.+|..+|+++
T Consensus        14 ~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~----l~p~~~~a~~~lg~~~~~l~~~~   89 (201)
T d2c2la1          14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE----LDGQSVKAHFFLGQCQLEMESYD   89 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH----hCCCcHHHHHHHHHHHHHCCCHH
Confidence            44999999999999999999999999999999999999999999999999999    79999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKD  271 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  271 (316)
                      +|+..|+++++++|++...+...+..+...++
T Consensus        90 ~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  121 (201)
T d2c2la1          90 EAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  121 (201)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            99999999999988654433333333333333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2e-15  Score=113.31  Aligned_cols=113  Identities=19%  Similarity=0.217  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------H
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY-------V  256 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~  256 (316)
                      +..+.++|+.++..|+|++|+++|+++++    ++|+++.++.++|.+|..+|++++|++.++++++++|++       .
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a   79 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA   79 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            34567899999999999999999999999    699999999999999999999999999999999998876       3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175          257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD  301 (316)
Q Consensus       257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~  301 (316)
                      .++..+|.++..++++++|+.+|++++..+|+ ++....+..+.+
T Consensus        80 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k  123 (128)
T d1elra_          80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEK  123 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence            57788889999999999999999999998875 556666555543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4e-15  Score=110.53  Aligned_cols=112  Identities=14%  Similarity=0.056  Sum_probs=101.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCc--HHHHHHH
Q 021175          188 FELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE---GKLDKGISQFETAVKLQPGY--VTAWNNL  262 (316)
Q Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~--~~~~~~l  262 (316)
                      .++++.+...+++++|++.|+++++    .+|.++.+++++|.++...   +++++|++.|+++++.+|+.  ..+++++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~----~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~L   78 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKA----AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL   78 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence            4677888899999999999999999    6999999999999999874   45667999999999998865  5689999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175          263 GDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV  303 (316)
Q Consensus       263 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~  303 (316)
                      |.+|..+|++++|+.+|+++++++|++..+...++.+..++
T Consensus        79 g~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          79 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-14  Score=113.76  Aligned_cols=113  Identities=12%  Similarity=0.116  Sum_probs=103.1

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS---------------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV  224 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~  224 (316)
                      ++..|++++|+..|+++++..|..               ..++.++|.+|.+.|++++|+.+++++++    ++|+++.+
T Consensus        23 ~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~----~~p~~~~a   98 (170)
T d1p5qa1          23 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE----LDSNNEKG   98 (170)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh----ccccchhh
Confidence            348999999999999999987753               35788999999999999999999999999    69999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 021175          225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL  276 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  276 (316)
                      ++++|.+|..+|++++|+..|+++++++|+++.+...++.+....++..+..
T Consensus        99 ~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          99 LSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988777665543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.58  E-value=4.5e-15  Score=113.91  Aligned_cols=101  Identities=17%  Similarity=0.140  Sum_probs=68.5

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKF----------YPAATKYLLQAIEKWDGDDQDLAQVYNALGVS  231 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~  231 (316)
                      +.+.+++|+..|+++++.+|+++++++++|.++...++          +++|++.|+++++    ++|+++.+++++|.+
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~----l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----IDPKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH----hcchhhHHHhhHHHH
Confidence            67788899999999999999999999999988875443          4566666666666    466666666666666


Q ss_pred             HHHcCC-----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175          232 YVREGK-----------LDKGISQFETAVKLQPGYVTAWNNLGDAY  266 (316)
Q Consensus       232 ~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~  266 (316)
                      |..+|+           +++|+++|+++++++|++..++..|+.+.
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            655442           45555555555555555555555555554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.58  E-value=2.6e-15  Score=115.25  Aligned_cols=110  Identities=15%  Similarity=0.124  Sum_probs=98.4

Q ss_pred             HHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175          193 VMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE----------GKLDKGISQFETAVKLQPGYVTAWNNL  262 (316)
Q Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l  262 (316)
                      .+.+.+.|++|++.|+++++    .+|+++.+++++|.++...          +++++|++.|+++++++|+++.+++++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~----~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l   81 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYK----SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   81 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHh----hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence            35667789999999999999    6999999999999999854          556899999999999999999999999


Q ss_pred             HHHHHHcCC-----------HHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175          263 GDAYEKKKD-----------LKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY  306 (316)
Q Consensus       263 g~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~  306 (316)
                      |.+|..+|+           +++|.++|+++++++|++..++..++...+..+.+
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            999988764           68999999999999999999999999887665544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.57  E-value=1.9e-14  Score=111.39  Aligned_cols=107  Identities=18%  Similarity=0.199  Sum_probs=97.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS----------------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQ  223 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~  223 (316)
                      ++..|+|.+|+..|++++...+..                ..++.++|.+|..+|++++|+++++++++    .+|.+..
T Consensus        27 ~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~----~~p~~~k  102 (153)
T d2fbna1          27 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK----IDKNNVK  102 (153)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc----ccchhhh
Confidence            448999999999999999866532                24788999999999999999999999999    6999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 021175          224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK  270 (316)
Q Consensus       224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  270 (316)
                      +++++|.++..+|++++|+..|+++++++|++..+...++.+..+++
T Consensus       103 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         103 ALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988876654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=1.6e-14  Score=113.72  Aligned_cols=112  Identities=15%  Similarity=0.184  Sum_probs=101.3

Q ss_pred             HHhhhHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHH
Q 021175          161 LVRRELDLSAKELQEQVRS----------------GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV  224 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~  224 (316)
                      ...|++++|+..|+++++.                +|....++.++|.++.+.|++++|+..++++++    ++|+++.+
T Consensus        38 ~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~----~~p~~~~a  113 (169)
T d1ihga1          38 FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE----IDPSNTKA  113 (169)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh----hhhhhhhH
Confidence            3889999999999998763                455677899999999999999999999999999    79999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 021175          225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL  276 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  276 (316)
                      ++++|.+|..+|++++|++.|+++++++|++..+...++.+........++.
T Consensus       114 ~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         114 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987776665543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.6e-14  Score=133.06  Aligned_cols=142  Identities=12%  Similarity=0.008  Sum_probs=101.3

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..+.|+.++..++++++.+|++...+.++|..+...|++++|...+++++.    .+|  ..++.++|.++..+|++++|
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~~--~~~~~~LG~l~~~~~~~~~A  171 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS----YIC--QHCLVHLGDIARYRNQTSQA  171 (497)
T ss_dssp             HHHHHHHHHHHHTC-------------------------------CCHHHH----HHH--HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC----CCH--HHHHHHHHHHHHHcccHHHH
Confidence            567889999999999999999999999999999999999999999999998    344  46889999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +.+|++|++++|++..+|++||.++...|+..+|+.+|.+++..+|.++.++.+|+.+..+.....++
T Consensus       172 ~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~  239 (497)
T d1ya0a1         172 ESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE  239 (497)
T ss_dssp             HHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999998876655443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.55  E-value=6.9e-14  Score=109.88  Aligned_cols=120  Identities=12%  Similarity=0.133  Sum_probs=103.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS---------------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV  224 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~  224 (316)
                      ++..|++++|+..|++++...|..               ..++.++|.+|...|++++|+.+++++++    ++|.+..+
T Consensus        25 ~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~----l~p~~~~a  100 (168)
T d1kt1a1          25 YFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG----LDSANEKG  100 (168)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh----cccchHHH
Confidence            448999999999999999754432               35688999999999999999999999999    69999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 021175          225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS-ALKAFEEVL  283 (316)
Q Consensus       225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al  283 (316)
                      ++++|.++..+|++++|++.|+++++++|++..+...++.+....+++.+ ..+.|.+..
T Consensus       101 ~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         101 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999877766543 344444433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.53  E-value=3.9e-14  Score=103.57  Aligned_cols=86  Identities=17%  Similarity=0.088  Sum_probs=83.0

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD  239 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~  239 (316)
                      +...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++    .+|++..+++++|.+|..+|+++
T Consensus        26 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~a~~~la~~y~~~g~~~  101 (112)
T d1hxia_          26 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM----LDPKDIAVHAALAVSHTNEHNAN  101 (112)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccc----cccccccchHHHHHHHHHCCCHH
Confidence            34899999999999999999999999999999999999999999999999999    69999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 021175          240 KGISQFETAV  249 (316)
Q Consensus       240 ~A~~~~~~al  249 (316)
                      +|++.+++.+
T Consensus       102 ~A~~~l~~~l  111 (112)
T d1hxia_         102 AALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999975

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.2e-13  Score=120.14  Aligned_cols=144  Identities=8%  Similarity=-0.029  Sum_probs=130.0

Q ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 021175          165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRR----------KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR  234 (316)
Q Consensus       165 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~  234 (316)
                      ..++|++.++++++.+|++..+|...+.++...          |++++|+.+++++++    .+|++..+++.+|.++..
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~----~~pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR----VNPKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH----hCCCcHHHHHHhhHHHHH
Confidence            348999999999999999999998888776554          447899999999999    699999999999999888


Q ss_pred             cCC--HHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCCC
Q 021175          235 EGK--LDKGISQFETAVKLQPGYVTAW-NNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVPV  311 (316)
Q Consensus       235 ~g~--~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~~  311 (316)
                      .++  +++|+..++++++.+|++..++ ...|.++...|++++|+.+++++++++|++..++.+++.++..+|++++|..
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            765  8999999999999999998876 5778999999999999999999999999999999999999999999988854


Q ss_pred             C
Q 021175          312 K  312 (316)
Q Consensus       312 ~  312 (316)
                      .
T Consensus       200 ~  200 (334)
T d1dcea1         200 Q  200 (334)
T ss_dssp             C
T ss_pred             H
Confidence            3

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.8e-13  Score=95.76  Aligned_cols=85  Identities=26%  Similarity=0.285  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 021175          184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWN  260 (316)
Q Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  260 (316)
                      ++.++++|.++++.|+|++|+++|++|+++.+.   ..++.+.++.++|.++.+.|++++|++.|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            455667777777777777777777777775432   23345667777777777777777777777777777777777777


Q ss_pred             HHHHHHHH
Q 021175          261 NLGDAYEK  268 (316)
Q Consensus       261 ~lg~~~~~  268 (316)
                      +++.+...
T Consensus        85 Nl~~~~~~   92 (95)
T d1tjca_          85 NLKYFEYI   92 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77655443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=7.7e-13  Score=98.88  Aligned_cols=102  Identities=18%  Similarity=0.243  Sum_probs=87.2

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHHHHcC
Q 021175          160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---DDQDLAQVYNALGVSYVREG  236 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~p~~~~~~~~lg~~~~~~g  236 (316)
                      ++..|+|++|+.+|.++++.+|+++.++.++|.+|...|+|++|++.++++++..+.   ..+..+.++.++|.++...+
T Consensus        14 ~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~   93 (128)
T d1elra_          14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE   93 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence            339999999999999999999999999999999999999999999999999995332   11223568889999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175          237 KLDKGISQFETAVKLQPGYVTAWNNL  262 (316)
Q Consensus       237 ~~~~A~~~~~~al~~~p~~~~~~~~l  262 (316)
                      ++++|+++|++++..+|+ ++....+
T Consensus        94 ~~~~A~~~~~kal~~~~~-~~~~~~l  118 (128)
T d1elra_          94 KYKDAIHFYNKSLAEHRT-PDVLKKC  118 (128)
T ss_dssp             CHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence            999999999999998875 4444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.3e-13  Score=97.59  Aligned_cols=83  Identities=20%  Similarity=0.138  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175          222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGY-------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP  294 (316)
Q Consensus       222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  294 (316)
                      ++-.+++|.++++.|+|++|+++|++|+++.|.+       ..++.++|.++.+.|++++|+++|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4557899999999999999999999999986543       789999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCC
Q 021175          295 RRDALKDRVP  304 (316)
Q Consensus       295 ~l~~l~~~~~  304 (316)
                      +++.+++.++
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9998877643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=4.3e-13  Score=114.54  Aligned_cols=147  Identities=14%  Similarity=0.082  Sum_probs=119.9

Q ss_pred             HhhhHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSG------DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD--DQDLAQVYNALGVSYV  233 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~p~~~~~~~~lg~~~~  233 (316)
                      ..+++++|++.|.++++..      +..+.++.++|.+|...|++++|+++|+++++..+..  ......++.++|.++.
T Consensus        49 ~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  128 (290)
T d1qqea_          49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (290)
T ss_dssp             HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHh
Confidence            7899999999999999863      2346789999999999999999999999999965431  2234678889999986


Q ss_pred             H-cCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH-------HHHHHHH
Q 021175          234 R-EGKLDKGISQFETAVKLQPG------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA-------RPRRDAL  299 (316)
Q Consensus       234 ~-~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-------~~~l~~l  299 (316)
                      . .|++++|++.|++++++.+.      ...++.++|.++..+|++++|+..|++++...|++...       +...+.+
T Consensus       129 ~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (290)
T d1qqea_         129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC  208 (290)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHH
Confidence            6 69999999999999987542      25678999999999999999999999999998887543       3455666


Q ss_pred             HhhCCCCCC
Q 021175          300 KDRVPLYKG  308 (316)
Q Consensus       300 ~~~~~~~~~  308 (316)
                      +...+++..
T Consensus       209 ~l~~~d~~~  217 (290)
T d1qqea_         209 QLAATDAVA  217 (290)
T ss_dssp             HHHTTCHHH
T ss_pred             HHHhccHHH
Confidence            666666543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=3e-12  Score=109.17  Aligned_cols=171  Identities=13%  Similarity=-0.001  Sum_probs=129.0

Q ss_pred             hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCC------HHHHHH
Q 021175          116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDAS------ATEYFE  189 (316)
Q Consensus       116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  189 (316)
                      ..++.+.|.+.|..+..+......... ....+...|..+.     ..|++++|++.++++++..+..      ..++.+
T Consensus        49 ~~~~~~~A~~~y~kA~~~~~~~~~~~~-~a~~~~~~g~~y~-----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          49 LRKELNLAGDSFLKAADYQKKAGNEDE-AGNTYVEAYKCFK-----SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HTTCTHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHH-----HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            455667777788755554333222111 2245556666665     8999999999999999876544      678889


Q ss_pred             HHHHHHH-cCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHH
Q 021175          190 LGAVMLR-RKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV-------TAW  259 (316)
Q Consensus       190 lg~~~~~-~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~  259 (316)
                      +|.++.. .|++++|+++|++++++.+.  ..+....++.++|.++..+|+|++|++.|++++...|...       ..+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            9998866 59999999999999986432  1234567899999999999999999999999999987763       567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175          260 NNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA  292 (316)
Q Consensus       260 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  292 (316)
                      .+.|.++...|+++.|...++++.+++|.....
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s  235 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence            889999999999999999999999999976654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.45  E-value=1e-13  Score=107.50  Aligned_cols=107  Identities=16%  Similarity=0.076  Sum_probs=87.5

Q ss_pred             HHHHHH--HHHHHHcCChHHHHHHHHHHHHhcCCCC--------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 021175          185 TEYFEL--GAVMLRRKFYPAATKYLLQAIEKWDGDD--------QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG  254 (316)
Q Consensus       185 ~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~~~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  254 (316)
                      .++..+  |..++..|+|++|++.|++++++.+...        +..+.+|.++|.+|..+|++++|++.+++++++.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            344444  7788889999999999999999765421        124678999999999999999999999999987542


Q ss_pred             -----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 021175          255 -----------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV  291 (316)
Q Consensus       255 -----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  291 (316)
                                 ...+++++|.+|..+|++++|+.+|++++++.|+...
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence                       2457899999999999999999999999999765443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=4.1e-13  Score=116.78  Aligned_cols=131  Identities=6%  Similarity=-0.089  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC------
Q 021175          165 ELDLSAKELQEQVRSGDASATEY-FELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK------  237 (316)
Q Consensus       165 ~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~------  237 (316)
                      ++++++..++++++.+|+...++ ...|.++...+++++|+++++++++    .+|.+..+|+++|.++..+|+      
T Consensus       124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~----~~p~~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT----RNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT----TTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            35556666666666666555543 3445555555666666666666665    466666666666665554433      


Q ss_pred             ----------------------------------------------------------HHHHHHHHHHHHHhCCCcHHHH
Q 021175          238 ----------------------------------------------------------LDKGISQFETAVKLQPGYVTAW  259 (316)
Q Consensus       238 ----------------------------------------------------------~~~A~~~~~~al~~~p~~~~~~  259 (316)
                                                                                +++|++.+.++++.+|++..++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  279 (334)
T d1dcea1         200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI  279 (334)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHH
Confidence                                                                      2333444444444445555566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175          260 NNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL  299 (316)
Q Consensus       260 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l  299 (316)
                      +.+|.++...|++++|+++|+++++++|+....+..++..
T Consensus       280 ~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~  319 (334)
T d1dcea1         280 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  319 (334)
T ss_dssp             HHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence            6666666666666666666666666666665555555443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.32  E-value=8.9e-13  Score=110.85  Aligned_cols=134  Identities=10%  Similarity=-0.046  Sum_probs=118.9

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175          158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK  237 (316)
Q Consensus       158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~  237 (316)
                      ++.+..|++++|++.++++++.+|+++.++.++|.++...|++++|++.++++++    .+|++...+..++.++...++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~----l~P~~~~~~~~l~~ll~a~~~   79 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK----LFPEYLPGASQLRHLVKAAQA   79 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHhccc
Confidence            4566899999999999999999999999999999999999999999999999999    699999999999999988888


Q ss_pred             HHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 021175          238 LDKGISQFETAVK-LQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR  295 (316)
Q Consensus       238 ~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  295 (316)
                      .+++...+.+... .+|.....+...+..+...|++++|.+.++++.+..|+.+..+..
T Consensus        80 ~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~  138 (264)
T d1zbpa1          80 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND  138 (264)
T ss_dssp             HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred             cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence            8877766555433 356667788889999999999999999999999999998776543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.31  E-value=1.2e-11  Score=95.59  Aligned_cols=96  Identities=13%  Similarity=0.096  Sum_probs=82.2

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CC----cc
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS------------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---DD----QD  220 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~----p~  220 (316)
                      .+..|+|++|++.|++++++.|+.            +.++.++|.+|...|++++|++.++++++..+.   ..    |.
T Consensus        19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~   98 (156)
T d2hr2a1          19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL   98 (156)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence            448899999999999999987764            468999999999999999999999999986432   12    23


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175          221 LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY  255 (316)
Q Consensus       221 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  255 (316)
                      ...+++++|.+|..+|++++|++.|++++++.|+.
T Consensus        99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            45678999999999999999999999999986643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.4e-13  Score=123.22  Aligned_cols=140  Identities=11%  Similarity=0.033  Sum_probs=86.3

Q ss_pred             hhHHHHHHHHHHHHHcCC--CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175          164 RELDLSAKELQEQVRSGD--ASA-TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK  240 (316)
Q Consensus       164 ~~~~~A~~~~~~al~~~p--~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~  240 (316)
                      ..+..+++.+++..+...  +.. .....++.+....+.|+.|+..++++.+    .+|.+...+.++|..+...|++++
T Consensus        63 ~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~----l~~~~~~~~~~lg~~~~~~~~~~~  138 (497)
T d1ya0a1          63 HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN----VDLPCRVKSSQLGIISNKQTHTSA  138 (497)
T ss_dssp             HHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------
T ss_pred             HHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CChhhHHHHHHhHHHHHhCCCHHH
Confidence            345567777777765443  222 2223345566667778888888888887    689999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      |+..++++++.+|  ..++.++|.++...|++++|+.+|+++++++|+++.++.++|.++...|+..+|
T Consensus       139 A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A  205 (497)
T d1ya0a1         139 IVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT  205 (497)
T ss_dssp             ----CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHH
Confidence            9999999998776  468899999999999999999999999999999999999999999999987644

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=5.2e-10  Score=95.74  Aligned_cols=142  Identities=13%  Similarity=0.018  Sum_probs=123.0

Q ss_pred             HHhhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCCH
Q 021175          161 LVRRELDLSAKELQEQVRSGDASA-TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR-EGKL  238 (316)
Q Consensus       161 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~-~g~~  238 (316)
                      ...|+++++...|+++++..|.+. .+|...+......|++++|.+.|+++++    ..|.+...+...|..... .|+.
T Consensus       110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~----~~~~~~~~~~~~a~~e~~~~~~~  185 (308)
T d2onda1         110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE----DARTRHHVYVTAALMEYYCSKDK  185 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT----STTCCTHHHHHHHHHHHHTSCCH
T ss_pred             HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHhccCH
Confidence            378999999999999999999764 5789999999999999999999999999    688888888888887554 6899


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----HHHHHHHHHhhCCCC
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV----ARPRRDALKDRVPLY  306 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~l~~l~~~~~~~  306 (316)
                      +.|...|+++++.+|+++..+..++..+...|++++|...|+++++..|.+++    .+......+...|+.
T Consensus       186 ~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~  257 (308)
T d2onda1         186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999998776543    566666555555553

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=6.6e-10  Score=95.08  Aligned_cols=144  Identities=13%  Similarity=-0.033  Sum_probs=129.3

Q ss_pred             HhhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHHcCCHH
Q 021175          162 VRRELDLSAKELQEQVRS-GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL-AQVYNALGVSYVREGKLD  239 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~-~~~~~~lg~~~~~~g~~~  239 (316)
                      ..+..+++...|+++++. .|.+...|...+......|++++|...|+++++    ..|.+ ..+|...+......|+++
T Consensus        76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~----~~~~~~~~~w~~~~~~~~~~~~~~  151 (308)
T d2onda1          76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIK  151 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SSSSCTHHHHHHHHHHHHHHHCHH
T ss_pred             cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH----HhcCChHHHHHHHHHHHHHcCChH
Confidence            345678899999999975 788899999999999999999999999999999    56654 557899999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175          240 KGISQFETAVKLQPGYVTAWNNLGDAYEK-KKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      +|.+.|+++++..|.+...+...+..... .|+.+.|...|+++++..|+++..+...+......|+.+.|
T Consensus       152 ~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~a  222 (308)
T d2onda1         152 SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT  222 (308)
T ss_dssp             HHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHH
Confidence            99999999999999999999999987544 68999999999999999999999999999999999887644

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=9.3e-10  Score=94.11  Aligned_cols=131  Identities=9%  Similarity=-0.100  Sum_probs=112.3

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHH
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS-----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSY  232 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~  232 (316)
                      .+..|++++|++.++++++..|++     ..++..+|.++...|++++|++.|+++++..+.  ..+.....+.+++.++
T Consensus        22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  101 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL  101 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            458999999999999999999976     358889999999999999999999999986443  2234567888999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 021175          233 VREGKLDKGISQFETAVKLQPG--------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK  290 (316)
Q Consensus       233 ~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  290 (316)
                      ...|++.+|.+.+.+++.+.+.        ....+..+|.++...|++++|...++++....+...
T Consensus       102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~  167 (366)
T d1hz4a_         102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  167 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence            9999999999999999976422        245778899999999999999999999999877643

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=9e-10  Score=94.22  Aligned_cols=148  Identities=11%  Similarity=-0.016  Sum_probs=85.6

Q ss_pred             HhhhHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDA-----SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---DDQDLAQVYNALGVSYV  233 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~p~~~~~~~~lg~~~~  233 (316)
                      ..|+++.+...++++....+.     ...++...+..+...+++.++...+.++......   ..+....++..+|.++.
T Consensus       145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (366)
T d1hz4a_         145 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ  224 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             HhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence            445555555555555443332     1233344444444444444444444444443222   12233445566677777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHhhC
Q 021175          234 REGKLDKGISQFETAVKLQPGY----VTAWNNLGDAYEKKKDLKSALKAFEEVLLF------DPNNKVARPRRDALKDRV  303 (316)
Q Consensus       234 ~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~l~~l~~~~  303 (316)
                      ..|++++|.+.++++++..|.+    ...+.++|.++...|++++|...+++++..      .|....++..++.++...
T Consensus       225 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  304 (366)
T d1hz4a_         225 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA  304 (366)
T ss_dssp             HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC
Confidence            7777777777777777665543    455667777777777777777777777633      344556677777777777


Q ss_pred             CCCCCC
Q 021175          304 PLYKGV  309 (316)
Q Consensus       304 ~~~~~A  309 (316)
                      |++++|
T Consensus       305 g~~~~A  310 (366)
T d1hz4a_         305 GRKSDA  310 (366)
T ss_dssp             TCHHHH
T ss_pred             CCHHHH
Confidence            776554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=3.7e-10  Score=88.93  Aligned_cols=71  Identities=24%  Similarity=0.263  Sum_probs=65.2

Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhcCCC
Q 021175          218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEV-------LLFDPN  288 (316)
Q Consensus       218 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------l~~~p~  288 (316)
                      .+....++.+++.++...|++++|+..++++++.+|.+..+|.+++.++...|++++|+..|+++       +-++|.
T Consensus        63 ~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          63 VEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            45567889999999999999999999999999999999999999999999999999999999998       446775

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.89  E-value=2.6e-10  Score=95.47  Aligned_cols=114  Identities=15%  Similarity=0.139  Sum_probs=95.3

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 021175          192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD  271 (316)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  271 (316)
                      .-.+..|++++|++.++++++    .+|+++.++.++|.++...|++++|++.|+++++++|++..++..++.++...++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~----~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~   79 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIK----ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA   79 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHH----TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc
Confidence            345678999999999999999    7999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHhc-CCCChhHHHHHHHHHhhCCCCCCC
Q 021175          272 LKSALKAFEEVLLF-DPNNKVARPRRDALKDRVPLYKGV  309 (316)
Q Consensus       272 ~~~A~~~~~~al~~-~p~~~~a~~~l~~l~~~~~~~~~A  309 (316)
                      .+++...+.+.... +|.....+...+.+....|++++|
T Consensus        80 ~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A  118 (264)
T d1zbpa1          80 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQV  118 (264)
T ss_dssp             HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHH
Confidence            87776655544333 455556666667777777776544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.87  E-value=1.5e-07  Score=77.86  Aligned_cols=141  Identities=18%  Similarity=0.265  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCccHH
Q 021175          147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLR----RKFYPAATKYLLQAIEKWDGDDQDLA  222 (316)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~p~~~  222 (316)
                      +++.+|..+.     .++++++|++.|+++.+.  +++.+++++|.+|..    ..++..|..+++++.+.      .++
T Consensus         4 ~~~~lG~~~~-----~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~------~~~   70 (265)
T d1ouva_           4 ELVGLGAKSY-----KEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------NYS   70 (265)
T ss_dssp             HHHHHHHHHH-----HTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCH
T ss_pred             HHHHHHHHHH-----HCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc------ccc
Confidence            3445555444     789999999999999775  578899999999987    67888888888888762      223


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHh-----------------------------------------------
Q 021175          223 QVYNALGVSYVR----EGKLDKGISQFETAVKL-----------------------------------------------  251 (316)
Q Consensus       223 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~~-----------------------------------------------  251 (316)
                      .+..++|.++..    .++.++|...++++.+.                                               
T Consensus        71 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~  150 (265)
T d1ouva_          71 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGS  150 (265)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhh
Confidence            333344433332    23333333333333322                                               


Q ss_pred             -----------------------CCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          252 -----------------------QPGYVTAWNNLGDAYEK----KKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       252 -----------------------~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                                             ++.++.+.+++|.+|..    ..++++|+.+|+++.+.  +++.+.++++.++..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~  226 (265)
T d1ouva_         151 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYN  226 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHT
T ss_pred             hhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHc
Confidence                                   13346678889988887    67899999999999886  568899999998875

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.84  E-value=5e-08  Score=72.42  Aligned_cols=113  Identities=19%  Similarity=0.147  Sum_probs=95.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCCH
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR----EGKL  238 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~----~g~~  238 (316)
                      ..|+++|+++|+++.+.+  ++.+.+++|.  ....++++|+++++++.+      .+++.+.+++|.+|..    ..++
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~------~g~~~a~~~Lg~~y~~g~~~~~d~   75 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACE------LNSGNGCRFLGDFYENGKYVKKDL   75 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHCSSSCCCH
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhc------ccchhhhhhHHHhhhhccccchhh
Confidence            468999999999998875  5566777765  346789999999999988      2567889999999987    6789


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 021175          239 DKGISQFETAVKLQPGYVTAWNNLGDAYEK----KKDLKSALKAFEEVLLFDP  287 (316)
Q Consensus       239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p  287 (316)
                      ++|+++|+++.+.  .++.+.++||.+|..    ..+.++|..+|+++.+...
T Consensus        76 ~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          76 RKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            9999999999875  678999999999987    5689999999999988643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=2.1e-08  Score=78.55  Aligned_cols=87  Identities=7%  Similarity=0.045  Sum_probs=79.7

Q ss_pred             HHHhhhHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 021175          160 VLVRRELDLSAKELQEQVRSGDAS----------------------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD  217 (316)
Q Consensus       160 ~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  217 (316)
                      ....|++++|++.|.++++..+..                      ..++.+++.++...|++++|+.+++++++    .
T Consensus        21 ~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~----~   96 (179)
T d2ff4a2          21 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF----E   96 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----H
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH----h
Confidence            348999999999999999987643                      25789999999999999999999999999    6


Q ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       218 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      +|.+..+|.+++.++...|++++|++.|+++.+
T Consensus        97 ~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          97 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999844

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=7.1e-08  Score=69.62  Aligned_cols=81  Identities=12%  Similarity=0.085  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 021175          222 AQVYNALGVSYVRE---GKLDKGISQFETAVKLQPGY-VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRD  297 (316)
Q Consensus       222 ~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~  297 (316)
                      ..+.++.|.++.+.   ++.++|+..++++++.+|.+ .+++++||..|.++|++++|..+++++++++|++..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            45666666666654   34457777777777777755 467777777777777777777777777777777777776666


Q ss_pred             HHHhh
Q 021175          298 ALKDR  302 (316)
Q Consensus       298 ~l~~~  302 (316)
                      .+..+
T Consensus       115 ~Ie~~  119 (124)
T d2pqrb1         115 MVEDK  119 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=1e-06  Score=63.35  Aligned_cols=82  Identities=9%  Similarity=0.030  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 021175          183 SATEYFELGAVMLRRK---FYPAATKYLLQAIEKWDGDDQDL-AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTA  258 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  258 (316)
                      ...+.++.|.++.+..   +.++++..++++++    .+|.+ .+++++||..|+++|+|++|.++++++++++|++..+
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~----~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            4788999999998764   45789999999998    47755 5899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q 021175          259 WNNLGDAYEK  268 (316)
Q Consensus       259 ~~~lg~~~~~  268 (316)
                      ....-.+..+
T Consensus       110 ~~L~~~Ie~~  119 (124)
T d2pqrb1         110 GALKSMVEDK  119 (124)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7766555433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.48  E-value=2.1e-06  Score=70.76  Aligned_cols=110  Identities=22%  Similarity=0.277  Sum_probs=91.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHH
Q 021175          183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR----EGKLDKGISQFETAVKLQPGYVTA  258 (316)
Q Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~  258 (316)
                      +|++++++|..+...+|+++|+++|+++.+      .++..++++||.+|..    ..++..|..+++++.+  ++++.+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~------~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a   72 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACD------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNG   72 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccch
Confidence            578999999999999999999999999987      2467899999999998    7899999999999886  457888


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175          259 WNNLGDAYEK----KKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR  302 (316)
Q Consensus       259 ~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~  302 (316)
                      ..++|.++..    .++.++|...++++.+..+  ..+...++..+..
T Consensus        73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~  118 (265)
T d1ouva_          73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHD  118 (265)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred             hhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccC
Confidence            8999988875    5688999999999987644  4555666555543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.14  E-value=2.2e-05  Score=57.53  Aligned_cols=85  Identities=16%  Similarity=0.091  Sum_probs=73.0

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH---
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLR----RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR---  234 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~---  234 (316)
                      ...+.++|++.++++.+.  .++.+.+.+|..|..    ..++++|+++|+++.+.      .++.+.++||.+|..   
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~------g~~~a~~~Lg~~y~~G~g  106 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKG  106 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSS
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc------CcchHHHHHHHHHHcCCc
Confidence            456889999999998875  578999999999987    57899999999999983      457789999999988   


Q ss_pred             -cCCHHHHHHHHHHHHHhCCC
Q 021175          235 -EGKLDKGISQFETAVKLQPG  254 (316)
Q Consensus       235 -~g~~~~A~~~~~~al~~~p~  254 (316)
                       .++.++|+++|++|.+....
T Consensus       107 v~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_         107 VVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCH
T ss_pred             cCCCHHHHHHHHHHHHHCCCH
Confidence             67999999999999986543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=1.1  Score=38.27  Aligned_cols=137  Identities=7%  Similarity=-0.038  Sum_probs=93.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHH
Q 021175          163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI  242 (316)
Q Consensus       163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~  242 (316)
                      .+..+.+...+........+.......++. ....+++..+...++..-.    .....+...|-+|..+...|+.++|.
T Consensus       265 ~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~~~~~~~~~~~l~~----~~~~~~r~~YW~gRa~~~~G~~~~A~  339 (450)
T d1qsaa1         265 NDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLPM----EAKEKDEWRYWQADLLLERGREAEAK  339 (450)
T ss_dssp             TTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSCT----TGGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCchHHHHHHHHhhcccccchHHHHHHHHH-HHHcCChHHHHHHHHhcCc----ccccHHHHHHHHHHHHHHcCChhhHH
Confidence            344556666666655555544444444444 4556788888877765433    23355778899999999999999999


Q ss_pred             HHHHHHHHhCCCc-----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 021175          243 SQFETAVKLQPGY-----------------------------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR  293 (316)
Q Consensus       243 ~~~~~al~~~p~~-----------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  293 (316)
                      ..|+++... +++                             ...-...+..+...|+..+|...+...++.  .++.-.
T Consensus       340 ~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~  416 (450)
T d1qsaa1         340 EILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQ  416 (450)
T ss_dssp             HHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHH
T ss_pred             HHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHH
Confidence            999988752 221                             112345567788899999999999887754  345667


Q ss_pred             HHHHHHHhhCCCCC
Q 021175          294 PRRDALKDRVPLYK  307 (316)
Q Consensus       294 ~~l~~l~~~~~~~~  307 (316)
                      ..++.+..+.|.+.
T Consensus       417 ~~la~lA~~~g~~~  430 (450)
T d1qsaa1         417 AQLARYAFNNQWWD  430 (450)
T ss_dssp             HHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCCChh
Confidence            77788888887664

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=92.56  E-value=1.5  Score=37.44  Aligned_cols=118  Identities=8%  Similarity=0.020  Sum_probs=82.1

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVM----LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK  237 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~  237 (316)
                      ...+.+.+...+.+.....+.....+.......    ...+..+.|.........    ...+.......++. ....++
T Consensus       226 a~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~w~~~~-al~~~~  300 (450)
T d1qsaa1         226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM----RSQSTSLIERRVRM-ALGTGD  300 (450)
T ss_dssp             HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH----TCCCHHHHHHHHHH-HHHHTC
T ss_pred             hccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc----cccchHHHHHHHHH-HHHcCC
Confidence            456778888888887766665554444333333    345677888888887776    34344444444444 456789


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175          238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL  284 (316)
Q Consensus       238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  284 (316)
                      +..+...++..-......+...|.+|..+...|+.++|...|+++..
T Consensus       301 ~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            99999888765332234478889999999999999999999999875

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.65  E-value=0.66  Score=30.42  Aligned_cols=19  Identities=5%  Similarity=0.288  Sum_probs=12.2

Q ss_pred             HHHcCCHHHHHHHHHHHHH
Q 021175          232 YVREGKLDKGISQFETAVK  250 (316)
Q Consensus       232 ~~~~g~~~~A~~~~~~al~  250 (316)
                      +-..|+|++|+..|.++++
T Consensus        25 ~D~~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_          25 LDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            4556677766666666654

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.51  E-value=1.2  Score=27.96  Aligned_cols=29  Identities=21%  Similarity=0.209  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175          222 AQVYNALGVSYVREGKLDKGISQFETAVK  250 (316)
Q Consensus       222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~  250 (316)
                      +..+-..+.-+...|+|++||++.++|..
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44455567777777888888777766543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.51  E-value=11  Score=30.65  Aligned_cols=106  Identities=17%  Similarity=0.116  Sum_probs=62.4

Q ss_pred             HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175          162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG  241 (316)
Q Consensus       162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A  241 (316)
                      ..++++.|.+...+.     +....|......+.+..+..-|.-     +......+|+   -....-..|...|.+++.
T Consensus        52 ~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i-----~~~~~~~~~d---~l~~~v~~ye~~~~~e~L  118 (336)
T d1b89a_          52 HLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM-----CGLHIVVHAD---ELEELINYYQDRGYFEEL  118 (336)
T ss_dssp             TTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH-----TTTTTTTCHH---HHHHHHHHHHHTTCHHHH
T ss_pred             hhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH-----HHHHhhcCHH---HHHHHHHHHHHcCChHHH
Confidence            444555555444433     455666666666666555443211     1100002333   233455667788889999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175          242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE  281 (316)
Q Consensus       242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  281 (316)
                      +.+++.++...+.+...+..++.+|.+.+ .++=+++++.
T Consensus       119 i~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~  157 (336)
T d1b89a_         119 ITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLEL  157 (336)
T ss_dssp             HHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence            99999888888888888888888776654 3444444443